Citrus Sinensis ID: 011183

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-
Protein Sequence
MVGNLSGAEFDTEVAEIRSSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVRANELNQPRDELRKTVTQIKKDVHTQLEQTRRTNKNVHNISKELRKLHREGINNATNSVTVVAVLFATVAFASIFTVPGGDDDNGKAVVVRRASFKIFFIFNAIALFTSLAVVVVQITLVRGETKAEKRVVEVINKLMWLASVCTSVAFIASSYIVVGRRHEWAAILVTVVGGLIMAGVLGTMTYYVVKSKRVRSIRKREKNARMRSGSNSWYPSDYSNSEIDRIYAL
Secondary Structure (PSIPRED)
ccccccccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHcccccccccccccccHHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHccccccccccccccccHHHHHHHcccccHHHHHHHHHHHccHHHHcccccccHHHHHHHHHccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHHccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHccHHHHHHHHHHHHHHHHcccccccHHHHHHcHHHHHHHHcHHHHHHHHHHHHHHHHHHHHccccccccccccEEEccccHEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHccccccEEEEc
Coil and Loop (DISEMBL)
mvgnlsgaefdTEVAEIRSSVVNEVNELGETALFTAADKGHIEVVNELLKYstkegltrknrsgfdplhiAAVQGHHAIVQVLLdhdpslsqttgpsnatplvsaaTRGHTAVVNELLskdgglleisrSNGKNALHFAARQGHVDVVKALLskdpqlarrtdkkgqTALHMAVKGQSCEVVKLLLEADAAIVMlpdkfgntalhvATRKKRTEIVTELLslpdtnvnaltrDHKTALDiaeglpsseeASEIKDCLARCGAvranelnqprdELRKTVTQIKKDVHTQLEQTRRTNKNVHNISKELRKLHREGINNATNSVTVVAVLFATVAFAsiftvpggdddngkAVVVRRASFKIFFIFNAIALFTSLAVVVVQITLVRGETKAEKRVVEVINKLMWLASVCTSVAFIASSYIVVGRRHEWAAILVTVVGGLIMAGVLGTMTYYVVKSKRVRSIRKReknarmrsgsnswypsdysnseiDRIYAL
Flexible Loop (DISEMBL)
mvgnlsgaefdtevAEIRSSVVNEVNELGETAlftaadkghIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTEllslpdtnvnaltRDHKTALDIAEGLPSSEEASEIKDCLARCGAVranelnqprdelrKTVTQIKKDvhtqleqtrrtnknvhnISKELRKLHREGINNATNSVTVVAVLFATVAFASIftvpggdddnGKAVVVRRASFKIFFIFNAIALFTSLAVVVVQITLvrgetkaekRVVEVINKLMWLASVCTSVAFIASSYIVVGRRHEWAAILVTVVGGLIMAGVLGTMTyyvvkskrvrsirkreknarmrsgsnswypsdysnseidriyal
Low Complexity Region (SEG)
MVGNLSGAEFDTEVAEIRSSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVRANELNQPRDELRKTVTQIKKDVHTQLEQTRRTNKNVHNISKELRKLHREGInnatnsvtvvavlfatvafaSIFTVPGGDDDNGKAVVVRRASFKIFFIFNAIALFTSLAVVVVQITLVRGETKAEKRVVEVINKLMWLASVCTSVAFIASSYIVVGRRHEWAAILVTVVGGLIMAGVLGTMTYYvvkskrvrsirkrekNARMRSGSNSWYPSDYSNSEIDRIYAL
Disordered region (IsUnstruct)
****************IRSSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLD************************HTAVVNELLSKDGGLLEISR*NGKNALHFAARQGHVDVVKALL****************ALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDH*TAL****************DCLARCGAV**********************************************LHREGINNATNSVTVVAVLFATVAFASIFTVPGGDDDNGKAVVVRRASFKIFFIFNAIALFTSLAVVVVQITLVRGETKAEKRVVEVINKLMWLASVCTSVAFIASSYIVVGRRHEWAAILVTVVGGLIMAGVLGTMTYYVVKSK*************************************
Disordered Region (DISOPRED)
MVGNLSGAEFDTEVAEIRSSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVRANELNQPRDELRKTVTQIKKDVHT*********************LHREGINNATNSVTVVAVLFATVAFASIFTVPGGDDDNGKAVVVRRASFKIFFIFNAIALFTSLAVVVVQITLVRGETKAEKRVVEVINKLMWLASVCTSVAFIASSYIVVGRRHEWAAILVTVVGGLIMAGVLGTMTYYVVKSKR***************************SEIDRIYAL
Disordered Region (DISEMBL)
********EFDTEVAEIRSSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQL**************AVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEG*********IKDCLARCGAVRANELNQPRDELRKTVTQIKKDVHTQLEQTRRTNKNVHNISKELRKLHREGINNATNSVTVVAVLFATVAFASIFTVPGGDDDNGKAVVVRRASFKIFFIFNAIALFTSLAVVVVQITLVRGETKAEKRVVEVINKLMWLASVCTSVAFIASSYIVVGRRHEWAAILVTVVGGLIMAGVLGTMTYYVVKSKRV******************WYPSDYSNSEIDRIYAL
Disordered Region (DISPRO)
MVGNLSGAEFDTEVAEIRSSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVRANELNQPRDELRKTVTQIKKDVHTQLEQTRRTNKNVHNISKELRKLHREGINNATNSVTVVAVLFATVAFASIFTVPGGDDDNGKAVVVRRASFKIFFIFNAIALFTSLAVVVVQITLVRGETKAEKRVVEVINKLMWLASVCTSVAFIASSYIVVGRRHEWAAILVTVVGGLIMAGVLGTMTYYVVKSKRVRSIR********************SNSEIDRIYAL
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVGNLSGAEFDTEVAEIRSSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVRANELNQPRDELRKTVTQIKKDVHTQLEQTRRTNKNVHNISKELRKLHREGINNATNSVTVVAVLFATVAFASIFTVPGGDDDNGKAVVVRRASFKIFFIFNAIALFTSLAVVVVQITLVRGETKAEKRVVEVINKLMWLASVCTSVAFIASSYIVVGRRHEWAAILVTVVGGLIMAGVLGTMTYYVVKSKRVRSIRKREKNARMRSGSNSWYPSDYSNSEIDRIYAL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	491	2.2.26 [Sep-21-2011]
Q9C7A2	590	Ankyrin repeat-containing	yes	no	0.997	0.830	0.841	0.0
Q9ZU96	532	Ankyrin repeat-containing	no	no	0.987	0.911	0.423	1e-101
Q6AWW5	524	Ankyrin repeat-containing	no	no	0.896	0.839	0.436	2e-94
Q9ULH0	1771	Kinase D-interacting subs	yes	no	0.421	0.116	0.343	2e-21
Q9EQG6	1762	Kinase D-interacting subs	no	no	0.421	0.117	0.343	4e-21
Q80YE7	1442	Death-associated protein	yes	no	0.448	0.152	0.337	4e-21
Q7T163	1672	Kinase D-interacting subs	yes	no	0.405	0.119	0.374	2e-20
P53355	1430	Death-associated protein	no	no	0.448	0.153	0.324	8e-20
Q8C0T1	654	Protein fem-1 homolog A-B	no	no	0.519	0.389	0.294	1e-17
Q4V890	654	Protein fem-1 homolog A O	no	no	0.543	0.408	0.297	2e-17

>sp|Q9C7A2|Y3236_ARATH Ankyrin repeat-containing protein At3g12360 OS=Arabidopsis thaliana GN=At3g12360 PE=2 SV=1

 Score =  843 bits (2179), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 413/491 (84%), Positives = 451/491 (91%), Gaps = 1/491 (0%)

Query: 1   MVGNLSGAEFDTEVAEIRSSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRK 60
           M G LSG EFD EVAEIR+S+VNEVNELGETALFTAADKGH++VV ELLKYS++E + +K
Sbjct: 101 MEGILSGEEFDAEVAEIRASIVNEVNELGETALFTAADKGHLDVVKELLKYSSRESIAKK 160

Query: 61  NRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSK 120
           NRSG+DPLHIAA+QGHHAIV+VLLDHD +LSQT GPSNATPLVSAA RGHT VVN+LLSK
Sbjct: 161 NRSGYDPLHIAAIQGHHAIVEVLLDHDATLSQTFGPSNATPLVSAAMRGHTEVVNQLLSK 220

Query: 121 DGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCE 180
            G LLEISRSN KNALH AARQGHV+V+KALLSKDPQLARR DKKGQTALHMAVKGQS E
Sbjct: 221 AGNLLEISRSNNKNALHLAARQGHVEVIKALLSKDPQLARRIDKKGQTALHMAVKGQSSE 280

Query: 181 VVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDI 240
           VVKLLL+AD AIVM PDK  NTALHVATRKKR EIV  LLSLPDTN N LTRDHKTALDI
Sbjct: 281 VVKLLLDADPAIVMQPDKSCNTALHVATRKKRAEIVELLLSLPDTNANTLTRDHKTALDI 340

Query: 241 AEGLPSSEEASEIKDCLARCGAVRANELNQPRDELRKTVTQIKKDVHTQLEQTRRTNKNV 300
           AEGLP SEE+S IK+CLAR GA+RANELNQPRDELR TVTQIK DVH QLEQT+RTNKNV
Sbjct: 341 AEGLPLSEESSYIKECLARSGALRANELNQPRDELRSTVTQIKNDVHIQLEQTKRTNKNV 400

Query: 301 HNISKELRKLHREGINNATNSVTVVAVLFATVAFASIFTVPGGDDDNGKAVVVRRASFKI 360
           HNISKELRKLHREGINNATNSVTVVAVLFATVAFA+IFTVPGGD+++G AVVV RASFKI
Sbjct: 401 HNISKELRKLHREGINNATNSVTVVAVLFATVAFAAIFTVPGGDNNDGSAVVVGRASFKI 460

Query: 361 FFIFNAIALFTSLAVVVVQITLVRGETKAEKRVVEVINKLMWLASVCTSVAFIASSYIVV 420
           FFIFNA+ALFTSLAVVVVQITLVRGETKAEKRVVEVINKLMWLAS+CTSVAF+ASSYIVV
Sbjct: 461 FFIFNALALFTSLAVVVVQITLVRGETKAEKRVVEVINKLMWLASMCTSVAFLASSYIVV 520

Query: 421 GRRHEWAAILVTVVGGLIMAGVLGTMTYYVVKSKRVRSIRKREKNARMRSGSNSWYPSDY 480
           GR++EWAA LVTVVGG+IMAGVLGTMTYYVVKSKR RS+RK+ K+AR RSGSNSW+ SD+
Sbjct: 521 GRKNEWAAELVTVVGGVIMAGVLGTMTYYVVKSKRTRSMRKKVKSAR-RSGSNSWHHSDF 579

Query: 481 SNSEIDRIYAL 491
           SNSE+D I+A+
Sbjct: 580 SNSEVDPIFAI 590

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZU96|Y2168_ARATH Ankyrin repeat-containing protein At2g01680 OS=Arabidopsis thaliana GN=At2g01680 PE=1 SV=1

 Score =  369 bits (946), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 216/510 (42%), Positives = 316/510 (61%), Gaps = 25/510 (4%)

Query: 1   MVGNLSGAEFDTEVAEIRSSVVNEV----NELGETALFTAADKGHIEVVNELLKYSTKEG 56
           +V NL+G E   E +    S V E+    N+ GETA++ +A +   ++   L+++S+ E 
Sbjct: 29  LVDNLTGDELIDESSP--CSAVAELMSVQNDAGETAVYISAAENLEDIFRYLIRFSSLET 86

Query: 57  LTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNE 116
           +  +++S  +  H+AA +GH  IV+ LL   P L +    SN +PL +AA + H  +VN 
Sbjct: 87  VKIRSKSDMNAFHVAAKRGHLGIVKELLRLWPELCRICDASNTSPLYAAAVQDHLEIVNA 146

Query: 117 LLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKG 176
           +L  D     I R NGK +LH A R G + +VKAL+ KD  +    DKKGQTALHMAVKG
Sbjct: 147 MLDVDPSCAMIVRKNGKTSLHTAGRYGLLRIVKALIEKDAAIVGVKDKKGQTALHMAVKG 206

Query: 177 QSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKT 236
           +S EVV+ +L+AD  I+   D+ GNTALH+ATRK R +I + LL+     VNA+    +T
Sbjct: 207 RSLEVVEEILQADYTILNERDRKGNTALHIATRKARPQITSLLLTFTAIEVNAINNQKET 266

Query: 237 ALDIAEGLPSSEEASEIKDCLARCGAVRANELNQPRDE---LRKTVTQIKKDVHTQLEQT 293
           A+D+A+ L  SE A EI + L   GA     + +  DE   L++ V+ IK +V +QL Q 
Sbjct: 267 AMDLADKLQYSESALEINEALVEAGAKHGRFIGRE-DEARALKRAVSDIKHEVQSQLLQN 325

Query: 294 RRTNKNVHNISKELRKLHREGINNATNSVTVVAVLFATVAFASIFTVPGG----DDDNGK 349
            +TN+ V  I+KELRKLHRE + N TNS+TVVAVLFA++AF +IF +PG         G+
Sbjct: 326 EKTNRRVSGIAKELRKLHREAVQNTTNSITVVAVLFASIAFLAIFNLPGQYFTEGSHVGQ 385

Query: 350 AVVVRRASFKIFFIFNAIALFTSLAVVVVQITLVRGETKAEKRVVEVINKLMWLASVCTS 409
           A +  R  F++F + NA +LF SLAVVVVQITLV  +T+A+K+VV V+NKLMW A  CT 
Sbjct: 386 ANIAGRTGFRVFCLLNATSLFISLAVVVVQITLVAWDTRAQKKVVSVVNKLMWAACACTF 445

Query: 410 VAFIASSYIVVGRRHEWAAILVTVVGGLIMAGVLGTMTYYVVKSKRVRSIRKREKNARMR 469
            AF+A ++ VVG+ + W AI +T++G  I+ G L +M Y+V + +R RS    ++  R+R
Sbjct: 446 GAFLAIAFAVVGKGNSWMAITITLLGAPILVGTLASMCYFVFR-QRFRSGNDSQR--RIR 502

Query: 470 SGSNSW-------YPSDYSN-SEIDRIYAL 491
            GS+         + SD+ + S+ ++I AL
Sbjct: 503 RGSSKSFSWSYSHHVSDFEDESDFEKIIAL 532

Arabidopsis thaliana (taxid: 3702)

>sp|Q6AWW5|Y5262_ARATH Ankyrin repeat-containing protein At5g02620 OS=Arabidopsis thaliana GN=At5g02620 PE=1 SV=1

 Score =  347 bits (889), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 207/474 (43%), Positives = 294/474 (62%), Gaps = 34/474 (7%)

Query: 1   MVGNLSGAEFDTEVAEIRSSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRK 60
           M+G   G E    +AE         N+ GETAL+ AA+ G+ ++V  L+K+S       K
Sbjct: 36  MIGEHDGVELKELLAE--------QNQSGETALYVAAEYGYTDMVKILMKHSDSVLAGTK 87

Query: 61  NRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSK 120
            ++GFD  HIAA  G+  ++ VL++ +P LS T   S  T L +AA++GH  +V  LL K
Sbjct: 88  AKNGFDAFHIAAKNGNLQVLDVLIEANPELSFTFDSSKTTALHTAASQGHGEIVCFLLDK 147

Query: 121 DGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCE 180
              L  I+RSNGK ALH AAR GH  +VK L+ K   +  R DKKGQTALHMAVKGQ+ E
Sbjct: 148 GVDLAAIARSNGKTALHSAARNGHTVIVKKLIEKKAGMVTRVDKKGQTALHMAVKGQNTE 207

Query: 181 VVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDI 240
           +V +L+EAD +++   D  GNT LH+A RK R EIV  +L   + +  A+ +  +TALDI
Sbjct: 208 IVDVLMEADGSLINSADNKGNTPLHIAVRKNRAEIVQTVLKYCEVSRVAVNKSGETALDI 267

Query: 241 AE--GLPSSEEASEIKDCLARCG-----AVRANELNQPRD---ELRKTVTQIKKDVHTQL 290
           AE  GL       EI   L + G     +++  E  +P     +L++TV++I  +VHTQL
Sbjct: 268 AEKTGL------HEIVPLLQKIGMQNARSIKPAEKVEPSGSSRKLKETVSEIGHEVHTQL 321

Query: 291 EQTRRTNKNVHNISKELRKLHREGINNATNSVTVVAVLFATVAFASIFTVPGGDDDN--- 347
           EQT RT + +  I+K + K+H EG+NNA NS T+VA+L ATVAFA+IF VPG   D+   
Sbjct: 322 EQTGRTRREIQGIAKRVNKMHTEGLNNAINSTTLVAILIATVAFAAIFNVPGQYTDDPKD 381

Query: 348 -------GKAVVVRRASFKIFFIFNAIALFTSLAVVVVQITLVRGETKAEKRVVEVINKL 400
                  G+A    R  F IF +F++ ALF SLAVVVVQ ++V  E +A+K+++ +INKL
Sbjct: 382 VPPGYSLGEARAAPRPEFLIFVVFDSFALFISLAVVVVQTSVVVIERRAKKQMMAIINKL 441

Query: 401 MWLASVCTSVAFIASSYIVVGRRHEWAAILVTVVGGLIMAGVLGTMTYYVVKSK 454
           MW+A +  SVAF++ S++VVG + +  A+ VT +G LIM   LGTM Y+V+ ++
Sbjct: 442 MWMACIMISVAFVSLSFVVVGEKEKPLAVGVTAIGALIMVSTLGTMCYWVIANR 495

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ULH0|KDIS_HUMAN Kinase D-interacting substrate of 220 kDa OS=Homo sapiens GN=KIDINS220 PE=1 SV=3

 Score =  104 bits (259), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 87/253 (34%), Positives = 132/253 (52%), Gaps = 46/253 (18%)

Query: 22  VNEVNELGETALFTAADKGHIEVVNELLK-----------------YSTKEG-------- 56
           V+E NE G+T L  AA++G++E+V EL+K                  ++KEG        
Sbjct: 31  VDERNECGQTPLMIAAEQGNLEIVKELIKNGANCNLEDLDNWTALISASKEGHVHIVEEL 90

Query: 57  ------LTRKNRSGFDPLHIAAVQGHHAIVQVLLDH--DPSLSQTTGPSNATPLVSAATR 108
                 L  ++  G+  L  A  +G   +V++LL H  +PS+   TG  +  P++ AA R
Sbjct: 91  LKCGVNLEHRDMGGWTALMWACYKGRTDVVELLLSHGANPSV---TGLYSVYPIIWAAGR 147

Query: 109 GHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKG-- 166
           GH  +V+ LL ++G  +  S   G   L +AAR+GH++ VK LL+    +    D++G  
Sbjct: 148 GHADIVH-LLLQNGAKVNCSDKYGTTPLVWAARKGHLECVKHLLA----MGADVDQEGAN 202

Query: 167 -QTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDT 225
             TAL +AVKG   + VK +L+ +   V L DK GNTAL +A+++  TEIV +LL    T
Sbjct: 203 SMTALIVAVKGGYTQSVKEILKRNPN-VNLTDKDGNTALMIASKEGHTEIVQDLLDA-GT 260

Query: 226 NVNALTRDHKTAL 238
            VN   R   T L
Sbjct: 261 YVNIPDRSGDTVL 273

Promotes a prolonged MAP-kinase signaling by neurotrophins through activation of a Rap1-dependent mechanism. Provides a docking site for the CRKL-C3G complex, resulting in Rap1-dependent sustained ERK activation. May play an important role in regulating postsynaptic signal transduction through the syntrophin-mediated localization of receptor tyrosine kinases such as EPHA4. In cooperation with SNTA1 can enhance EPHA4-induced JAK/STAT activation. May play a role in neurotrophin- and ephrin-mediated neuronal outgrowth and in axon guidance during neural development and in neuronal regeneration (By similarity). Modulates stress-induced apoptosis of melanoma cells via regulation of the MEK/ERK signaling pathway.

Homo sapiens (taxid: 9606)

>sp|Q9EQG6|KDIS_RAT Kinase D-interacting substrate of 220 kDa OS=Rattus norvegicus GN=Kidins220 PE=1 SV=2

 Score =  103 bits (256), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 87/253 (34%), Positives = 131/253 (51%), Gaps = 46/253 (18%)

Query: 22  VNEVNELGETALFTAADKGHIEVVNELLK-----------------YSTKEG-------- 56
           V+E NE G+T L  AA++G++E+V ELLK                  ++KEG        
Sbjct: 31  VDERNECGQTPLMLAAEQGNVEIVKELLKNGANCNLEDLDNWTALISASKEGHIHIVEEL 90

Query: 57  ------LTRKNRSGFDPLHIAAVQGHHAIVQVLLDH--DPSLSQTTGPSNATPLVSAATR 108
                 L  ++  G+  L  A  +G   +V++LL H  +PS+   TG  +  P++ AA R
Sbjct: 91  LKSGASLEHRDMGGWTALMWACYKGRTDVVELLLSHGANPSV---TGLYSVYPIIWAAGR 147

Query: 109 GHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKG-- 166
           GH  +V+ LL ++G  +  S   G   L +AAR+GH++ VK LL+    +    D++G  
Sbjct: 148 GHADIVH-LLLQNGAKVNCSDKYGTTPLVWAARKGHLECVKHLLA----MGADVDQEGAN 202

Query: 167 -QTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDT 225
             TAL +AVKG   + VK +L+ +   V L DK GNTAL +A+++   EIV +LL    T
Sbjct: 203 SMTALIVAVKGGYTQSVKEILKRNPN-VNLTDKDGNTALMIASKEGHIEIVQDLLDA-GT 260

Query: 226 NVNALTRDHKTAL 238
            VN   R   T L
Sbjct: 261 YVNIPDRSGDTVL 273

Promotes a prolonged MAP-kinase signaling by neurotrophins through activation of a Rap1-dependent mechanism. Provides a docking site for the CRKL-C3G complex, resulting in Rap1-dependent sustained ERK activation. May play an important role in regulating postsynaptic signal transduction through the syntrophin-mediated localization of receptor tyrosine kinases such as EPHA4. In cooperation with SNTA1 can enhance EPHA4-induced JAK/STAT activation. May play a role in neurotrophin- and ephrin-mediated neuronal outgrowth and in axon guidance during neural development and in neuronal regeneration.

Rattus norvegicus (taxid: 10116)

>sp|Q80YE7|DAPK1_MOUSE Death-associated protein kinase 1 OS=Mus musculus GN=Dapk1 PE=1 SV=3

 Score =  103 bits (256), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 78/231 (33%), Positives = 117/231 (50%), Gaps = 11/231 (4%)

Query: 29  GETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDP 88
           GETAL  AA  GH +VV  L  + +      K      PLH AA  G++++ + L +   
Sbjct: 445 GETALHVAARYGHADVVQLLCSFGSNPDFQDKEEE--TPLHCAAWHGYYSVAKALCEVGC 502

Query: 89  SLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVV 148
           +++        TPL++A+ RG+  +V E L++ G  L  S  +G  ALH A R+  ++V+
Sbjct: 503 NVN-IKNREGETPLLTASARGYHDIV-ECLAEHGADLNASDKDGHIALHLAVRRCQMEVI 560

Query: 149 KALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVAT 208
           K LL          D+ G T LH+A K  S  +V  L EA   +  + +K+G T LH+A 
Sbjct: 561 KTLLGHG-SFVDFQDRHGNTPLHVACKDGSAPIVVALCEASCNLD-ISNKYGRTPLHLAA 618

Query: 209 RKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLAR 259
                ++V   L L   NV ALT D KTA D+A+    +E+   +   LAR
Sbjct: 619 NNGILDVV-RYLCLMGANVEALTSDGKTAEDLAK----AEQHEHVAGLLAR 664

Calcium/calmodulin-dependent serine/threonine kinase involved in multiple cellular signaling pathways that trigger cell survival, apoptosis, and autophagy. Regulates both type I apoptotic and type II autophagic cell deaths signal, depending on the cellular setting. The former is caspase-dependent, while the latter is caspase-independent and is characterized by the accumulation of autophagic vesicles. Phosphorylates PIN1 resulting in inhibition of its catalytic activity, nuclear localization, and cellular function. Phosphorylates TPM1, enhancing stress fiber formation in endothelial cells. Phosphorylates STX1A and significantly decreases its binding to STXBP1. Phosphorylates PRKD1 and regulates JNK signaling by binding and activating PRKD1 under oxidative stress. Phosphorylates BECN1, reducing its interaction with BCL2 and BCL2L1 and promoting the induction of autophagy. Phosphorylates TSC2, disrupting the TSC1-TSC2 complex and stimulating mTORC1 activity in a growth factor-dependent pathway. Phosphorylates RPS6, MYL9 and DAPK3 (By similarity). Acts as a signaling amplifier of NMDA receptors at extrasynaptic sites for mediating brain damage in stroke. Cerebral ischemia recruits DAPK1 into the NMDA receptor complex and it phosphorylates GRINB at Ser-1303 inducing injurious Ca(2+) influx through NMDA receptor channels, resulting in an irreversible neuronal death.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q7T163|KDIS_DANRE Kinase D-interacting substrate of 220 kDa OS=Danio rerio GN=kidins220 PE=2 SV=2

 Score =  100 bits (250), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 79/211 (37%), Positives = 115/211 (54%), Gaps = 12/211 (5%)

Query: 31  TALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSL 90
           +AL +AA +GH+EVV ELL+ S    +  ++  G+  L  A+ +G   +  VLL++  + 
Sbjct: 73  SALISAAKEGHVEVVKELLENSAY--IEHRDMGGWTALTWASYKGRVEVATVLLENGANP 130

Query: 91  SQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKA 150
           + T    +  P++ AA RGH  +V +LL + G  +  S   G   L +AAR+GH D V  
Sbjct: 131 NTTGQQYSVYPIIWAAGRGHAEIV-KLLLEHGAKVNCSDKYGTTPLIWAARKGHYDCVMH 189

Query: 151 LLSKDPQLARRTDKKG---QTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVA 207
           LL     +    D++G    TAL +AVKG   EVVK LL+ +  + M  DK GNTAL +A
Sbjct: 190 LLENGADV----DQEGANSMTALIVAVKGGYTEVVKELLKRNPNVNMT-DKDGNTALMIA 244

Query: 208 TRKKRTEIVTELLSLPDTNVNALTRDHKTAL 238
            ++  TEIV +LL    T VN   R   T L
Sbjct: 245 AKEGYTEIVQDLLDA-GTYVNIPDRSGDTVL 274

Downstream target for both neurotrophin and ephrin receptors.

Danio rerio (taxid: 7955)

>sp|P53355|DAPK1_HUMAN Death-associated protein kinase 1 OS=Homo sapiens GN=DAPK1 PE=1 SV=6

 Score = 99.0 bits (245), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 75/231 (32%), Positives = 117/231 (50%), Gaps = 11/231 (4%)

Query: 29  GETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDP 88
           GE AL  AA  GH +V   L  + +   +  K      PLH AA  G++++ + L +   
Sbjct: 445 GEMALHVAARYGHADVAQLLCSFGSNPNIQDKEEE--TPLHCAAWHGYYSVAKALCEAGC 502

Query: 89  SLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVV 148
           +++        TPL++A+ RG+  +V E L++ G  L     +G  ALH A R+  ++V+
Sbjct: 503 NVN-IKNREGETPLLTASARGYHDIV-ECLAEHGADLNACDKDGHIALHLAVRRCQMEVI 560

Query: 149 KALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVAT 208
           K LLS+        D+ G T LH+A K  +  +V  L EA+  +  + +K+G T LH+A 
Sbjct: 561 KTLLSQG-CFVDYQDRHGNTPLHVACKDGNMPIVVALCEANCNLD-ISNKYGRTPLHLAA 618

Query: 209 RKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLAR 259
                ++V   L L   +V ALT D KTA D+A     SE+   +   LAR
Sbjct: 619 NNGILDVV-RYLCLMGASVEALTTDGKTAEDLAR----SEQHEHVAGLLAR 664

Isoform 2 cannot induce apoptosis but can induce membrane blebbing.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8C0T1|FM1AB_MOUSE Protein fem-1 homolog A-B OS=Mus musculus GN=Fem1ab PE=2 SV=1

 Score = 91.7 bits (226), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 87/295 (29%), Positives = 135/295 (45%), Gaps = 40/295 (13%)

Query: 29  GETALFTAADKGHIEVVNELLKY-------STKEGLTRKNRSGFDPLHIAAVQGHHAIVQ 81
           G T L  AA +GH++VV  L+ +       S       +   G  PL  A+  GH A+V+
Sbjct: 41  GGTPLLIAARRGHLDVVEYLVDHCGASVEASGSVHFDGETIEGAPPLWAASAAGHLAVVR 100

Query: 82  VLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAAR 141
            LL    S+++TT  +N+TPL +A   GH  VV  L+ +    LE++  +G   L  +  
Sbjct: 101 SLLHRGASVNRTTC-TNSTPLRAACFNGHLDVVRCLVGEHKADLEVANRHGHTCLMISCY 159

Query: 142 QGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGN 201
           +GH ++ + LL +  Q+ RR+  KG TALH   +  S E+++LLL   A   M  D +G 
Sbjct: 160 KGHREIARYLLERGAQVNRRS-AKGNTALHDCAESGSLEILQLLLSCHAR--MERDGYGM 216

Query: 202 TALHVATRKKRTEIVTELLS------------LPDTNVNALTRDHKTALDIAEGLPSSEE 249
           T L  A+    T IV  L+             LP    + +  +H +         + E+
Sbjct: 217 TPLLAASITGHTNIVEYLIQEQPSHEQLSGTELPGEGSSQMAGNHCS---------TPED 267

Query: 250 ASEIKDCL--ARCGAVRANELNQPRDELRKTVTQIKKDVHTQLEQTRRTNKNVHN 302
           A + + C   +R  AV A EL      L  T    K+D+   L+  RR  +  H 
Sbjct: 268 AEQYESCCPTSREAAVEALEL------LGATYVDKKRDLLGALKHWRRAMELRHQ 316

Probable component of an E3 ubiquitin-protein ligase complex, in which it may act as a substrate recognition subunit. May participate in antiinflammatory signaling via its interaction with PTGER4.

Mus musculus (taxid: 10090)

>sp|Q4V890|FEM1A_RAT Protein fem-1 homolog A OS=Rattus norvegicus GN=Fem1a PE=2 SV=1

 Score = 91.3 bits (225), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 93/313 (29%), Positives = 140/313 (44%), Gaps = 46/313 (14%)

Query: 24  EVNEL------GETALFTAADKGHIEVVNELL-------KYSTKEGLTRKNRSGFDPLHI 70
           E+ EL      G T L  AA +GH++VV  L+       + S       +   G  PL  
Sbjct: 30  EIEELLGEVAGGGTPLLIAARRGHLDVVEYLVDNCGASVEASGSVHFDGETIEGAPPLWA 89

Query: 71  AAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRS 130
           A+  GH A+V+ LL    S+++TT  +N+TPL +A   GH  VV  L+ +    LE++  
Sbjct: 90  ASAAGHLAVVRSLLRRGASVNRTTR-TNSTPLRAACFDGHLDVVRYLVGEHKADLEVANR 148

Query: 131 NGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADA 190
           +G   L  +  +GH ++ + LL +  Q+ RR+  KG TALH   +  S E+++LLL   A
Sbjct: 149 HGHTCLMISCYKGHREIARYLLERGAQVNRRS-AKGNTALHDCAESGSLEILQLLLGCHA 207

Query: 191 AIVMLPDKFGNTALHVATRKKRTEIVTELLS------------LPDTNVNALTRDHKTAL 238
              M  D +G T L  A+    T IV  L+             LP    + +  +H +  
Sbjct: 208 R--MERDGYGMTPLLAASVTGHTNIVEYLIQEQPGHGQLSGTELPGEGSSQMAGNHCS-- 263

Query: 239 DIAEGLPSSEEASEIKDCL--ARCGAVRANELNQPRDELRKTVTQIKKDVHTQLEQTRRT 296
                  + EEA   + C   +R  AV A EL      L  T    K+D+   L+  RR 
Sbjct: 264 -------TPEEAEPYESCCPTSREAAVEALEL------LGATYVDKKRDLLGALKHWRRA 310

Query: 297 NKNVHNISKELRK 309
            +  H     L K
Sbjct: 311 MELRHQGGDYLPK 323

Probable component of an E3 ubiquitin-protein ligase complex, in which it may act as a substrate recognition subunit. May participate in antiinflammatory signaling via its interaction with PTGER4.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	491
255571695	570	ankyrin repeat-containing protein, putat	0.997	0.859	0.900	0.0
224109618	491	predicted protein [Populus trichocarpa]	0.997	0.997	0.880	0.0
224100903	588	predicted protein [Populus trichocarpa]	0.997	0.833	0.882	0.0
15230470	590	ankyrin repeats-containing protein [Arab	0.997	0.830	0.841	0.0
225448809	589	PREDICTED: ankyrin repeat-containing pro	0.989	0.825	0.843	0.0
21553618	534	ankyrin-like protein [Arabidopsis thalia	0.997	0.917	0.839	0.0
356576855	585	PREDICTED: ankyrin repeat-containing pro	0.991	0.832	0.828	0.0
449464198	590	PREDICTED: ankyrin repeat-containing pro	0.997	0.830	0.841	0.0
356536512	592	PREDICTED: ankyrin repeat-containing pro	1.0	0.829	0.812	0.0
225439834	638	PREDICTED: ankyrin repeat-containing pro	0.995	0.766	0.828	0.0

>gi|255571695|ref|XP_002526791.1| ankyrin repeat-containing protein, putative [Ricinus communis] gi|223533867|gb|EEF35597.1| ankyrin repeat-containing protein, putative [Ricinus communis]

 Score =  897 bits (2319), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 442/491 (90%), Positives = 464/491 (94%), Gaps = 1/491 (0%)

Query: 1   MVGNLSGAEFDTEVAEIRSSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRK 60
           +VG LSG EFD EV EIR+SVVNEVNELGETALFTAADKGH+EVV ELLKYS+KE +TRK
Sbjct: 81  LVGTLSGEEFDAEVVEIRASVVNEVNELGETALFTAADKGHLEVVKELLKYSSKECITRK 140

Query: 61  NRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSK 120
           NRS FD LHIAA+QGHH IVQVLLDHDPSLS+T GPSNATPLVSAATRGHTAVVNELLSK
Sbjct: 141 NRSNFDALHIAAMQGHHGIVQVLLDHDPSLSRTYGPSNATPLVSAATRGHTAVVNELLSK 200

Query: 121 DGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCE 180
           DG LLEISRSNGKNALH AARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCE
Sbjct: 201 DGSLLEISRSNGKNALHLAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCE 260

Query: 181 VVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDI 240
           VVKLLLEADAAIVMLPDKFG TALHVATRKKR EIV ELL LPDTNVNALTR+HKTALDI
Sbjct: 261 VVKLLLEADAAIVMLPDKFGYTALHVATRKKRVEIVNELLLLPDTNVNALTREHKTALDI 320

Query: 241 AEGLPSSEEASEIKDCLARCGAVRANELNQPRDELRKTVTQIKKDVHTQLEQTRRTNKNV 300
           AE L  SEE+SEIK+CL R GAVRANELNQPRDELRKTVTQIKKDVHTQLEQTR+TNKNV
Sbjct: 321 AEELTLSEESSEIKECLCRYGAVRANELNQPRDELRKTVTQIKKDVHTQLEQTRKTNKNV 380

Query: 301 HNISKELRKLHREGINNATNSVTVVAVLFATVAFASIFTVPGGDDDNGKAVVVRRASFKI 360
           HNISKELRKLHREGINNATNSVTVVAVLFATVAFA+IFTVPGGDD+NG AVVV  ASFKI
Sbjct: 381 HNISKELRKLHREGINNATNSVTVVAVLFATVAFAAIFTVPGGDDNNGIAVVVGHASFKI 440

Query: 361 FFIFNAIALFTSLAVVVVQITLVRGETKAEKRVVEVINKLMWLASVCTSVAFIASSYIVV 420
           FFIFNAIALFTSLAVVVVQITLVRGETKAE+RVVEVINKLMWLASVCTSVAFIASSYIVV
Sbjct: 441 FFIFNAIALFTSLAVVVVQITLVRGETKAERRVVEVINKLMWLASVCTSVAFIASSYIVV 500

Query: 421 GRRHEWAAILVTVVGGLIMAGVLGTMTYYVVKSKRVRSIRKREKNARMRSGSNSWYPSDY 480
           GR+HEWAA+LVTVVGG+IMAGVLGTMTYYVVKSKR+RS+RKREK+AR RSGSNSW  SD+
Sbjct: 501 GRKHEWAAVLVTVVGGVIMAGVLGTMTYYVVKSKRIRSMRKREKSAR-RSGSNSWQHSDF 559

Query: 481 SNSEIDRIYAL 491
           SNSE+DRIYAL
Sbjct: 560 SNSEVDRIYAL 570

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224109618|ref|XP_002315257.1| predicted protein [Populus trichocarpa] gi|222864297|gb|EEF01428.1| predicted protein [Populus trichocarpa]

 Score =  883 bits (2282), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 433/492 (88%), Positives = 467/492 (94%), Gaps = 2/492 (0%)

Query: 1   MVGNLSGAEFDTEVAEIRSSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRK 60
           M+G  SG +FD EVAEIR+SVVNEVNELGETALFTAADKGH+EVV ELL+YS KEGLTRK
Sbjct: 1   MMGTSSGDDFDAEVAEIRASVVNEVNELGETALFTAADKGHLEVVKELLQYSNKEGLTRK 60

Query: 61  NRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSK 120
           NRSG+D LHIAAVQGHHAIVQVLLDHDPSLSQT GPSNATPLVSAATRGHTAVV ELLSK
Sbjct: 61  NRSGYDSLHIAAVQGHHAIVQVLLDHDPSLSQTHGPSNATPLVSAATRGHTAVVIELLSK 120

Query: 121 DGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCE 180
           DG LLEISRSNGKNALH AARQGHVD+VKALLSKDPQLARRTDKKGQTAL MAVKGQSCE
Sbjct: 121 DGSLLEISRSNGKNALHLAARQGHVDIVKALLSKDPQLARRTDKKGQTALQMAVKGQSCE 180

Query: 181 VVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDI 240
           VVKLLL+ADAAIVMLPDKFGNTALHVATRKKR EIV ELLSLPDTNVNALTRDHKTALD+
Sbjct: 181 VVKLLLDADAAIVMLPDKFGNTALHVATRKKRVEIVNELLSLPDTNVNALTRDHKTALDL 240

Query: 241 AEGLPSSEEASEIKDCLARCGAVRANELNQPRDELRKTVTQIKKDVHTQLEQTRRTNKNV 300
           AE L  SEE+S+IK+CL+R GA+RANELNQPRDELRKTVTQIKKDVHTQLEQTRRTNKNV
Sbjct: 241 AEELTLSEESSDIKECLSRYGALRANELNQPRDELRKTVTQIKKDVHTQLEQTRRTNKNV 300

Query: 301 HNISKELRKLHREGINNATNSVTVVAVLFATVAFASIFTVPGGDDDNGKAVVVRRASFKI 360
           HNISKELRKLHREGINNATNSVTVVAVLFATVAFA+IFTVPGGD D+G AVVV  ASFKI
Sbjct: 301 HNISKELRKLHREGINNATNSVTVVAVLFATVAFAAIFTVPGGDRDSGVAVVVTHASFKI 360

Query: 361 FFIFNAIALFTSLAVVVVQITLVRGETKAEKRVVEVINKLMWLASVCTSVAFIASSYIVV 420
           FFIFNAIALFTSLAVVVVQITLVRGETKAE+RVVEVINKLMWLASVCTSVAF+ASSYIVV
Sbjct: 361 FFIFNAIALFTSLAVVVVQITLVRGETKAERRVVEVINKLMWLASVCTSVAFMASSYIVV 420

Query: 421 GRRHEWAAILVTVVGGLIMAGVLGTMTYYVVKSKRVRSIRKREKNARMRSGSNSW-YPSD 479
           GR+HEWAA+L+T+VGG+IMAGVLGTMTYYVVKSKR+RS+RK++K+AR RSGS+SW + S+
Sbjct: 421 GRKHEWAAMLITIVGGVIMAGVLGTMTYYVVKSKRIRSMRKKDKHAR-RSGSSSWHHNSE 479

Query: 480 YSNSEIDRIYAL 491
           +SNSE+DRI+AL
Sbjct: 480 FSNSEVDRIFAL 491

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224100903|ref|XP_002312060.1| predicted protein [Populus trichocarpa] gi|222851880|gb|EEE89427.1| predicted protein [Populus trichocarpa]

 Score =  879 bits (2270), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 434/492 (88%), Positives = 463/492 (94%), Gaps = 2/492 (0%)

Query: 1   MVGNLSGAEFDTEVAEIRSSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRK 60
           MVG LSGA+FDTEVAEIR+SVVNEVNELGETALFTAADKGH+EVV ELLKYS KE LTRK
Sbjct: 98  MVGTLSGADFDTEVAEIRASVVNEVNELGETALFTAADKGHLEVVKELLKYSNKECLTRK 157

Query: 61  NRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSK 120
           NRSG+DPLHIAAVQGHHAIVQVLLDHDPSLSQT GPSNATPLVSAATRGHTAVV ELLSK
Sbjct: 158 NRSGYDPLHIAAVQGHHAIVQVLLDHDPSLSQTHGPSNATPLVSAATRGHTAVVIELLSK 217

Query: 121 DGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCE 180
           DG LLEISRSNGKNALH AARQGHVD+VKALLSKDPQLARRTDKKGQTALHMAVKGQSCE
Sbjct: 218 DGSLLEISRSNGKNALHLAARQGHVDIVKALLSKDPQLARRTDKKGQTALHMAVKGQSCE 277

Query: 181 VVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDI 240
           VVKLLL+ADAAIVMLPDKFGNTALHVATRKKR EIV ELL LPDTNVNALTRDHKTALDI
Sbjct: 278 VVKLLLDADAAIVMLPDKFGNTALHVATRKKRAEIVNELLLLPDTNVNALTRDHKTALDI 337

Query: 241 AEGLPSSEEASEIKDCLARCGAVRANELNQPRDELRKTVTQIKKDVHTQLEQTRRTNKNV 300
           AE L  SEE+S+IK+CL R GA+RANELNQPRDELRKTVTQIK DVHTQLEQTRRTNKNV
Sbjct: 338 AEELVLSEESSDIKECLYRYGALRANELNQPRDELRKTVTQIKNDVHTQLEQTRRTNKNV 397

Query: 301 HNISKELRKLHREGINNATNSVTVVAVLFATVAFASIFTVPGGDDDNGKAVVVRRASFKI 360
           HNISKELRKLHREGINNATNSVTVVAVLFATVAFA+IFTVPGGD ++G AVVV   SFKI
Sbjct: 398 HNISKELRKLHREGINNATNSVTVVAVLFATVAFAAIFTVPGGDLNSGMAVVVSHTSFKI 457

Query: 361 FFIFNAIALFTSLAVVVVQITLVRGETKAEKRVVEVINKLMWLASVCTSVAFIASSYIVV 420
           FFIFNAIALFTSLAVVVVQITLVRGETKAE+RVVEVINKLMWLASVCTSVAF+AS+YIVV
Sbjct: 458 FFIFNAIALFTSLAVVVVQITLVRGETKAERRVVEVINKLMWLASVCTSVAFMASAYIVV 517

Query: 421 GRRHEWAAILVTVVGGLIMAGVLGTMTYYVVKSKRVRSIRKREKNARMRSGSNS-WYPSD 479
           GR HEWAA+L+T+VGG+IM  VLGTMTYYVVKSKR+RS+RKR+K++R RSGSNS  + S+
Sbjct: 518 GRTHEWAAVLITIVGGVIMTAVLGTMTYYVVKSKRIRSMRKRDKHSR-RSGSNSGHHNSE 576

Query: 480 YSNSEIDRIYAL 491
           +SNSE+DRIYAL
Sbjct: 577 FSNSEVDRIYAL 588

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15230470|ref|NP_187842.1| ankyrin repeats-containing protein [Arabidopsis thaliana] gi|75308849|sp|Q9C7A2.1|Y3236_ARATH RecName: Full=Ankyrin repeat-containing protein At3g12360 gi|12321945|gb|AAG51002.1|AC069474_1 ankyrin-like protein; 93648-91299 [Arabidopsis thaliana] gi|332641667|gb|AEE75188.1| ankyrin repeats-containing protein [Arabidopsis thaliana]

 Score =  843 bits (2179), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 413/491 (84%), Positives = 451/491 (91%), Gaps = 1/491 (0%)

Query: 1   MVGNLSGAEFDTEVAEIRSSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRK 60
           M G LSG EFD EVAEIR+S+VNEVNELGETALFTAADKGH++VV ELLKYS++E + +K
Sbjct: 101 MEGILSGEEFDAEVAEIRASIVNEVNELGETALFTAADKGHLDVVKELLKYSSRESIAKK 160

Query: 61  NRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSK 120
           NRSG+DPLHIAA+QGHHAIV+VLLDHD +LSQT GPSNATPLVSAA RGHT VVN+LLSK
Sbjct: 161 NRSGYDPLHIAAIQGHHAIVEVLLDHDATLSQTFGPSNATPLVSAAMRGHTEVVNQLLSK 220

Query: 121 DGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCE 180
            G LLEISRSN KNALH AARQGHV+V+KALLSKDPQLARR DKKGQTALHMAVKGQS E
Sbjct: 221 AGNLLEISRSNNKNALHLAARQGHVEVIKALLSKDPQLARRIDKKGQTALHMAVKGQSSE 280

Query: 181 VVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDI 240
           VVKLLL+AD AIVM PDK  NTALHVATRKKR EIV  LLSLPDTN N LTRDHKTALDI
Sbjct: 281 VVKLLLDADPAIVMQPDKSCNTALHVATRKKRAEIVELLLSLPDTNANTLTRDHKTALDI 340

Query: 241 AEGLPSSEEASEIKDCLARCGAVRANELNQPRDELRKTVTQIKKDVHTQLEQTRRTNKNV 300
           AEGLP SEE+S IK+CLAR GA+RANELNQPRDELR TVTQIK DVH QLEQT+RTNKNV
Sbjct: 341 AEGLPLSEESSYIKECLARSGALRANELNQPRDELRSTVTQIKNDVHIQLEQTKRTNKNV 400

Query: 301 HNISKELRKLHREGINNATNSVTVVAVLFATVAFASIFTVPGGDDDNGKAVVVRRASFKI 360
           HNISKELRKLHREGINNATNSVTVVAVLFATVAFA+IFTVPGGD+++G AVVV RASFKI
Sbjct: 401 HNISKELRKLHREGINNATNSVTVVAVLFATVAFAAIFTVPGGDNNDGSAVVVGRASFKI 460

Query: 361 FFIFNAIALFTSLAVVVVQITLVRGETKAEKRVVEVINKLMWLASVCTSVAFIASSYIVV 420
           FFIFNA+ALFTSLAVVVVQITLVRGETKAEKRVVEVINKLMWLAS+CTSVAF+ASSYIVV
Sbjct: 461 FFIFNALALFTSLAVVVVQITLVRGETKAEKRVVEVINKLMWLASMCTSVAFLASSYIVV 520

Query: 421 GRRHEWAAILVTVVGGLIMAGVLGTMTYYVVKSKRVRSIRKREKNARMRSGSNSWYPSDY 480
           GR++EWAA LVTVVGG+IMAGVLGTMTYYVVKSKR RS+RK+ K+AR RSGSNSW+ SD+
Sbjct: 521 GRKNEWAAELVTVVGGVIMAGVLGTMTYYVVKSKRTRSMRKKVKSAR-RSGSNSWHHSDF 579

Query: 481 SNSEIDRIYAL 491
           SNSE+D I+A+
Sbjct: 580 SNSEVDPIFAI 590

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225448809|ref|XP_002282204.1| PREDICTED: ankyrin repeat-containing protein At3g12360 [Vitis vinifera] gi|297736432|emb|CBI25303.3| unnamed protein product [Vitis vinifera]

 Score =  842 bits (2174), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 411/487 (84%), Positives = 449/487 (92%), Gaps = 1/487 (0%)

Query: 5   LSGAEFDTEVAEIRSSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSG 64
           +SGAEF+ EVAE+R+ +VNEVNELGETALFTAA+KGHI+VV ELLKYS +E ++RKNRS 
Sbjct: 104 MSGAEFEAEVAEVRTLMVNEVNELGETALFTAAEKGHIDVVKELLKYSNRESISRKNRSQ 163

Query: 65  FDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGL 124
           F PLHIAA QGHHAIVQVLLD+DP LS+T GPSNATPLVSAA+RGHTAVV ELLSKD GL
Sbjct: 164 FGPLHIAAAQGHHAIVQVLLDYDPELSKTIGPSNATPLVSAASRGHTAVVIELLSKDCGL 223

Query: 125 LEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKL 184
           LEI++SNGKNALH AARQGHVD+V+ALL KDPQLARRTDKKGQTALHMAVKG SCEVVKL
Sbjct: 224 LEIAKSNGKNALHLAARQGHVDIVEALLEKDPQLARRTDKKGQTALHMAVKGVSCEVVKL 283

Query: 185 LLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGL 244
           LL ADAAIVMLPDK GNTALHVATRKKR EIV ELL LPD NVNAL RDHKT+LDIAE L
Sbjct: 284 LLNADAAIVMLPDKQGNTALHVATRKKRAEIVNELLRLPDANVNALNRDHKTSLDIAEDL 343

Query: 245 PSSEEASEIKDCLARCGAVRANELNQPRDELRKTVTQIKKDVHTQLEQTRRTNKNVHNIS 304
             SEEASEIKDCL R GA++ANELNQPRDELR TVTQIK+DVHTQLEQTRRTNKNVHNIS
Sbjct: 344 SHSEEASEIKDCLIRYGAIKANELNQPRDELRNTVTQIKRDVHTQLEQTRRTNKNVHNIS 403

Query: 305 KELRKLHREGINNATNSVTVVAVLFATVAFASIFTVPGGDDDNGKAVVVRRASFKIFFIF 364
           KELRKLHREGINNATNSVTVVAVLFATVAFA+IFTVPGGD+ +G  VVV+ ASFKIFFIF
Sbjct: 404 KELRKLHREGINNATNSVTVVAVLFATVAFAAIFTVPGGDNPDGTGVVVKSASFKIFFIF 463

Query: 365 NAIALFTSLAVVVVQITLVRGETKAEKRVVEVINKLMWLASVCTSVAFIASSYIVVGRRH 424
           NA+ALFTSLAVVVVQITLVRGETKAE+ VV VINKLMWLASVCTSVAFIASSYIVVGR +
Sbjct: 464 NALALFTSLAVVVVQITLVRGETKAERNVVVVINKLMWLASVCTSVAFIASSYIVVGRHN 523

Query: 425 EWAAILVTVVGGLIMAGVLGTMTYYVVKSKRVRSIRKREKNARMRSGSNSWYPSDYSNSE 484
           EWAAI VTVVGG+IMAGVLGTMTYYVVKSKR+RS+R+++KNAR RSGSNSW+ S++S+SE
Sbjct: 524 EWAAIFVTVVGGVIMAGVLGTMTYYVVKSKRIRSVRRKDKNAR-RSGSNSWHHSEFSDSE 582

Query: 485 IDRIYAL 491
           IDRIYAL
Sbjct: 583 IDRIYAL 589

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21553618|gb|AAM62711.1| ankyrin-like protein [Arabidopsis thaliana]

 Score =  840 bits (2171), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 412/491 (83%), Positives = 450/491 (91%), Gaps = 1/491 (0%)

Query: 1   MVGNLSGAEFDTEVAEIRSSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRK 60
           M G LSG EFD EVAEIR+S+VNEVNELGETALFTAADKGH++VV ELLKYS++E + +K
Sbjct: 45  MEGILSGEEFDAEVAEIRASIVNEVNELGETALFTAADKGHLDVVKELLKYSSRESIAKK 104

Query: 61  NRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSK 120
           NRSG+DPLHIAA+QGHHAIV+V LDHD +LSQT GPSNATPLVSAA RGHT VVN+LLSK
Sbjct: 105 NRSGYDPLHIAAIQGHHAIVEVSLDHDATLSQTFGPSNATPLVSAAMRGHTEVVNQLLSK 164

Query: 121 DGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCE 180
            G LLEISRSN KNALH AARQGHV+V+KALLSKDPQLARR DKKGQTALHMAVKGQS E
Sbjct: 165 AGNLLEISRSNNKNALHLAARQGHVEVIKALLSKDPQLARRIDKKGQTALHMAVKGQSSE 224

Query: 181 VVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDI 240
           VVKLLL+AD AIVM PDK  NTALHVATRKKR EIV  LLSLPDTN N LTRDHKTALDI
Sbjct: 225 VVKLLLDADPAIVMQPDKSCNTALHVATRKKRAEIVELLLSLPDTNANTLTRDHKTALDI 284

Query: 241 AEGLPSSEEASEIKDCLARCGAVRANELNQPRDELRKTVTQIKKDVHTQLEQTRRTNKNV 300
           AEGLP SEE+S IK+CLAR GA+RANELNQPRDELR TVTQIK DVH QLEQT+RTNKNV
Sbjct: 285 AEGLPLSEESSYIKECLARSGALRANELNQPRDELRSTVTQIKNDVHIQLEQTKRTNKNV 344

Query: 301 HNISKELRKLHREGINNATNSVTVVAVLFATVAFASIFTVPGGDDDNGKAVVVRRASFKI 360
           HNISKELRKLHREGINNATNSVTVVAVLFATVAFA+IFTVPGGD+++G AVVV RASFKI
Sbjct: 345 HNISKELRKLHREGINNATNSVTVVAVLFATVAFAAIFTVPGGDNNDGSAVVVGRASFKI 404

Query: 361 FFIFNAIALFTSLAVVVVQITLVRGETKAEKRVVEVINKLMWLASVCTSVAFIASSYIVV 420
           FFIFNA+ALFTSLAVVVVQITLVRGETKAEKRVVEVINKLMWLAS+CTSVAF+ASSYIVV
Sbjct: 405 FFIFNALALFTSLAVVVVQITLVRGETKAEKRVVEVINKLMWLASMCTSVAFLASSYIVV 464

Query: 421 GRRHEWAAILVTVVGGLIMAGVLGTMTYYVVKSKRVRSIRKREKNARMRSGSNSWYPSDY 480
           GR++EWAA LVTVVGG+IMAGVLGTMTYYVVKSKR RS+RK+ K+AR RSGSNSW+ SD+
Sbjct: 465 GRKNEWAAELVTVVGGVIMAGVLGTMTYYVVKSKRTRSMRKKVKSAR-RSGSNSWHHSDF 523

Query: 481 SNSEIDRIYAL 491
           SNSE+D I+A+
Sbjct: 524 SNSEVDPIFAI 534

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356576855|ref|XP_003556545.1| PREDICTED: ankyrin repeat-containing protein At3g12360-like [Glycine max]

 Score =  839 bits (2167), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 407/491 (82%), Positives = 453/491 (92%), Gaps = 4/491 (0%)

Query: 5   LSGAEFD----TEVAEIRSSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRK 60
           LSG + D     E+AE+R+ +VNE NE GET LFTAA+KGH++VV ELL YS  + +++K
Sbjct: 95  LSGGDDDVDLNAEIAEVRACLVNEENEPGETPLFTAAEKGHLDVVKELLNYSNAQTVSKK 154

Query: 61  NRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSK 120
           NRSGFDPLHIAA QGHH+IVQVLLD++P LS+T GPSN+TPL++AATRGHT VVNELLSK
Sbjct: 155 NRSGFDPLHIAASQGHHSIVQVLLDYNPGLSKTIGPSNSTPLITAATRGHTEVVNELLSK 214

Query: 121 DGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCE 180
           D  LLEI+RSNGKNALH AARQGHV++VKALLSKDPQLARRTDKKGQTALHMAVKGQSC+
Sbjct: 215 DCSLLEIARSNGKNALHLAARQGHVEIVKALLSKDPQLARRTDKKGQTALHMAVKGQSCD 274

Query: 181 VVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDI 240
           VVKLLLEADAAIVMLPDKFGNTALHVATRKKR EIV ELL LPDTNVNALTRDHKTALDI
Sbjct: 275 VVKLLLEADAAIVMLPDKFGNTALHVATRKKRVEIVNELLHLPDTNVNALTRDHKTALDI 334

Query: 241 AEGLPSSEEASEIKDCLARCGAVRANELNQPRDELRKTVTQIKKDVHTQLEQTRRTNKNV 300
           AE LP SEEAS+IKDCL+R GA+RANELNQPRDELRKTVTQIKKDVHTQLEQT+RTNKNV
Sbjct: 335 AENLPLSEEASDIKDCLSRYGALRANELNQPRDELRKTVTQIKKDVHTQLEQTKRTNKNV 394

Query: 301 HNISKELRKLHREGINNATNSVTVVAVLFATVAFASIFTVPGGDDDNGKAVVVRRASFKI 360
           HNISKELRKLHREGINNATNSVTVVAVLFATVAFA+IFTVPGGDDD+G AVV   A+FKI
Sbjct: 395 HNISKELRKLHREGINNATNSVTVVAVLFATVAFAAIFTVPGGDDDDGSAVVAAYAAFKI 454

Query: 361 FFIFNAIALFTSLAVVVVQITLVRGETKAEKRVVEVINKLMWLASVCTSVAFIASSYIVV 420
           FF+FNAIALFTSLAVVVVQITLVRGETKAEKRVVEVINKLMWLASVCTSVAFIASSYIVV
Sbjct: 455 FFVFNAIALFTSLAVVVVQITLVRGETKAEKRVVEVINKLMWLASVCTSVAFIASSYIVV 514

Query: 421 GRRHEWAAILVTVVGGLIMAGVLGTMTYYVVKSKRVRSIRKREKNARMRSGSNSWYPSDY 480
           GR+++WAAILVT+VGG+I++GV+GTMTYYVV+SKR RS+RK+EK A  RSGSNSW+ S++
Sbjct: 515 GRKNKWAAILVTLVGGVIISGVIGTMTYYVVRSKRSRSMRKKEKQAARRSGSNSWHHSEF 574

Query: 481 SNSEIDRIYAL 491
           SNSE+DRIYAL
Sbjct: 575 SNSEVDRIYAL 585

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449464198|ref|XP_004149816.1| PREDICTED: ankyrin repeat-containing protein At3g12360-like [Cucumis sativus] gi|449518239|ref|XP_004166150.1| PREDICTED: ankyrin repeat-containing protein At3g12360-like [Cucumis sativus]

 Score =  838 bits (2166), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 413/491 (84%), Positives = 445/491 (90%), Gaps = 1/491 (0%)

Query: 1   MVGNLSGAEFDTEVAEIRSSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRK 60
           MV NLSGA+FD EVAE+RS VVNEVNELGETALFTAA++GHIEVV ELLKYS KE LT K
Sbjct: 101 MVRNLSGADFDAEVAEVRSLVVNEVNELGETALFTAAERGHIEVVKELLKYSNKETLTTK 160

Query: 61  NRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSK 120
           NRS FDPLHIAA QGHHAIVQVLL+H+PSLSQT GPSNATPL++AA RGHTAVV ELL+K
Sbjct: 161 NRSAFDPLHIAASQGHHAIVQVLLEHEPSLSQTFGPSNATPLITAAARGHTAVVEELLNK 220

Query: 121 DGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCE 180
           D  LLEI RSNGKNALHFA R GH ++VK LLSKDP LAR+ DKKGQTALHMAVKGQS +
Sbjct: 221 DRNLLEICRSNGKNALHFAVRPGHTEIVKLLLSKDPHLARKNDKKGQTALHMAVKGQSRD 280

Query: 181 VVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDI 240
           VVKLLLEAD AIVMLPDKFGNTALHVATRKKR EIV ELL LPDTNVNAL+RDHKTA DI
Sbjct: 281 VVKLLLEADPAIVMLPDKFGNTALHVATRKKRVEIVQELLLLPDTNVNALSRDHKTAFDI 340

Query: 241 AEGLPSSEEASEIKDCLARCGAVRANELNQPRDELRKTVTQIKKDVHTQLEQTRRTNKNV 300
           AE LP SEE+SEIKD L+R GAVRANELNQPRDELR TVTQIKKDVHTQLEQTR+TNKNV
Sbjct: 341 AEELPLSEESSEIKDSLSRYGAVRANELNQPRDELRNTVTQIKKDVHTQLEQTRKTNKNV 400

Query: 301 HNISKELRKLHREGINNATNSVTVVAVLFATVAFASIFTVPGGDDDNGKAVVVRRASFKI 360
           HNISKELRKLHREGINNATNSVTVVAVLFATVAFA+IFTVPGGD D G AVVV   SFKI
Sbjct: 401 HNISKELRKLHREGINNATNSVTVVAVLFATVAFAAIFTVPGGDTDQGTAVVVGTISFKI 460

Query: 361 FFIFNAIALFTSLAVVVVQITLVRGETKAEKRVVEVINKLMWLASVCTSVAFIASSYIVV 420
           FFIFNAIALFTSLAVVVVQITLVRGETKAE+RVVE+INKLMWLASVCTSVAF+ASSYIVV
Sbjct: 461 FFIFNAIALFTSLAVVVVQITLVRGETKAERRVVEIINKLMWLASVCTSVAFMASSYIVV 520

Query: 421 GRRHEWAAILVTVVGGLIMAGVLGTMTYYVVKSKRVRSIRKREKNARMRSGSNSWYPSDY 480
           G ++ WAA ++TVVGG+IMAGVLGTMTYYVVKSK  RS+RK+EK+ R RSGSNSW+ SD+
Sbjct: 521 GHKYRWAAAVITVVGGVIMAGVLGTMTYYVVKSKSRRSVRKKEKSNR-RSGSNSWHHSDF 579

Query: 481 SNSEIDRIYAL 491
           SNSE+DRIYAL
Sbjct: 580 SNSEVDRIYAL 590

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356536512|ref|XP_003536781.1| PREDICTED: ankyrin repeat-containing protein At3g12360-like [Glycine max]

 Score =  828 bits (2139), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/495 (81%), Positives = 451/495 (91%), Gaps = 4/495 (0%)

Query: 1   MVGNLSGA----EFDTEVAEIRSSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEG 56
           ++G LSG     + + E+AE+R+ + NE NELGET LFTAA+KGH++VV ELL YST + 
Sbjct: 98  IMGTLSGDGDEDDLNAEIAEVRACLANEENELGETPLFTAAEKGHLDVVKELLNYSTAQT 157

Query: 57  LTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNE 116
           +++KNRSGFDPLHIAA QGHH IVQVLLD+D  LS+T GPSN+TPL++AATRGHT VVNE
Sbjct: 158 VSKKNRSGFDPLHIAASQGHHPIVQVLLDYDSGLSKTIGPSNSTPLITAATRGHTEVVNE 217

Query: 117 LLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKG 176
           LLSKD  LLEI+RSNGKNALH AARQGHV++VKALLSKDPQLARRTDKKGQTALHMAVKG
Sbjct: 218 LLSKDCSLLEIARSNGKNALHLAARQGHVEIVKALLSKDPQLARRTDKKGQTALHMAVKG 277

Query: 177 QSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKT 236
           QSC+VVKLLLEADAAIVMLPDKFGNTALHVATRKKR EIV ELL LPDTNVNALTRDHKT
Sbjct: 278 QSCDVVKLLLEADAAIVMLPDKFGNTALHVATRKKRVEIVNELLHLPDTNVNALTRDHKT 337

Query: 237 ALDIAEGLPSSEEASEIKDCLARCGAVRANELNQPRDELRKTVTQIKKDVHTQLEQTRRT 296
           ALDIAE LP SEEAS+IKDCL+R GA+RANELNQPRDELRKTVTQIKKDVHTQLEQT+RT
Sbjct: 338 ALDIAEDLPLSEEASDIKDCLSRYGALRANELNQPRDELRKTVTQIKKDVHTQLEQTKRT 397

Query: 297 NKNVHNISKELRKLHREGINNATNSVTVVAVLFATVAFASIFTVPGGDDDNGKAVVVRRA 356
           NKNVHNISKELRKLHREGINNATNSVTVVAVLFATVAFA+IFTVPGGD ++G AVV   A
Sbjct: 398 NKNVHNISKELRKLHREGINNATNSVTVVAVLFATVAFAAIFTVPGGDHNDGSAVVAAYA 457

Query: 357 SFKIFFIFNAIALFTSLAVVVVQITLVRGETKAEKRVVEVINKLMWLASVCTSVAFIASS 416
           +FKIFF+FNAIALFTSLAVVVVQITLVRGETKAEKRVV VINKLMWLASVCTSV FIA+S
Sbjct: 458 AFKIFFVFNAIALFTSLAVVVVQITLVRGETKAEKRVVVVINKLMWLASVCTSVTFIAAS 517

Query: 417 YIVVGRRHEWAAILVTVVGGLIMAGVLGTMTYYVVKSKRVRSIRKREKNARMRSGSNSWY 476
           YIVVG+++EWAAILVT+VGG+I++GV+GTMTYYVV+SKR RS+RK+EK A  RSGSNSW+
Sbjct: 518 YIVVGKKNEWAAILVTLVGGVIISGVIGTMTYYVVRSKRSRSMRKKEKQAARRSGSNSWH 577

Query: 477 PSDYSNSEIDRIYAL 491
            S++SNSE+D IYAL
Sbjct: 578 HSEFSNSEVDPIYAL 592

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225439834|ref|XP_002277535.1| PREDICTED: ankyrin repeat-containing protein At3g12360 [Vitis vinifera] gi|297741528|emb|CBI32660.3| unnamed protein product [Vitis vinifera]

 Score =  828 bits (2138), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 407/491 (82%), Positives = 446/491 (90%), Gaps = 2/491 (0%)

Query: 1   MVGNLSGAEFDTEVAEIRSSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRK 60
           M G LSGA+FD EVAEIR++VV+EVNELGETALFTAA+KGH++VV ELL+YSTKEG+  K
Sbjct: 150 MTGTLSGADFDAEVAEIRAAVVDEVNELGETALFTAAEKGHLDVVKELLQYSTKEGIAMK 209

Query: 61  NRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSK 120
           N+SGFD LHIAA +GH  IV+VLLD+DP LS+T G SNATPL+SAATRGH AVVN LLSK
Sbjct: 210 NQSGFDALHIAASKGHQVIVEVLLDYDPELSKTVGQSNATPLISAATRGHLAVVNNLLSK 269

Query: 121 DGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCE 180
           D GLLEIS+SNGKNALH AARQGHVD+VKALL KDPQLARRTDKKGQTALHMAVKG S E
Sbjct: 270 DSGLLEISKSNGKNALHLAARQGHVDIVKALLDKDPQLARRTDKKGQTALHMAVKGVSRE 329

Query: 181 VVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDI 240
           VVKLLL+ADAAIVMLPDKFGNTALHVATRKKR EIV ELL LPDTNVNALTRDHKTALDI
Sbjct: 330 VVKLLLDADAAIVMLPDKFGNTALHVATRKKRAEIVNELLLLPDTNVNALTRDHKTALDI 389

Query: 241 AEGLPSSEEASEIKDCLARCGAVRANELNQPRDELRKTVTQIKKDVHTQLEQTRRTNKNV 300
           AEGLP SEE SEI+DCLAR GAV+ANELNQPRDELRKTVT+IKKDVHTQLEQTR+TNKNV
Sbjct: 390 AEGLPLSEETSEIRDCLARYGAVKANELNQPRDELRKTVTEIKKDVHTQLEQTRKTNKNV 449

Query: 301 HNISKELRKLHREGINNATNSVTVVAVLFATVAFASIFTVPGGDDDNGKAVVVRRASFKI 360
             I+KELRKLHREGINNATNSVTVVAVLFATVAFA+IFTVPGGD+D G AVVV   SFKI
Sbjct: 450 SGIAKELRKLHREGINNATNSVTVVAVLFATVAFAAIFTVPGGDNDLGVAVVVDSPSFKI 509

Query: 361 FFIFNAIALFTSLAVVVVQITLVRGETKAEKRVVEVINKLMWLASVCTSVAFIASSYIVV 420
           FFIFNAIALFTSLAVVVVQITLVRGETK+E+RVVEVINKLMWLASVCTSVAFIASSYIVV
Sbjct: 510 FFIFNAIALFTSLAVVVVQITLVRGETKSERRVVEVINKLMWLASVCTSVAFIASSYIVV 569

Query: 421 GRRHEWAAILVTVVGGLIMAGVLGTMTYYVVKSKRVRSIRKREKNARMRSGSNSWYPSDY 480
           GR + WAAILVTV+GG+ MAGVLGTMTYYVVKSKR R +RK+EK+  +RSG+ SW  SD 
Sbjct: 570 GRHNRWAAILVTVIGGVTMAGVLGTMTYYVVKSKRTRLLRKKEKH--LRSGTTSWRHSDL 627

Query: 481 SNSEIDRIYAL 491
           S+SE++ IYA+
Sbjct: 628 SDSEVNPIYAI 638

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	491
TAIR|locus:2092522	590	ITN1 "INCREASED TOLERANCE TO N	0.997	0.830	0.778	7e-196
TAIR|locus:2075009	607	AT3G09550 [Arabidopsis thalian	0.997	0.807	0.694	1.4e-176
TAIR|locus:2045233	662	AT2G31820 [Arabidopsis thalian	0.987	0.732	0.421	4.3e-93
TAIR|locus:2026489	543	AT1G07710 "AT1G07710" [Arabido	0.973	0.880	0.427	4e-90
TAIR|locus:2031948	627	AT1G05640 "AT1G05640" [Arabido	0.963	0.754	0.425	7.5e-89
TAIR|locus:2065434	532	AT2G01680 "AT2G01680" [Arabido	0.997	0.921	0.388	8e-85
TAIR|locus:2181768	524	ANK1 "ankyrin-like1" [Arabidop	0.867	0.812	0.415	1.8e-80
DICTYBASE|DDB_G0276013	748	DDB_G0276013 "cyclin-like F-bo	0.527	0.346	0.334	6.9e-23
TAIR|locus:2046628	601	AT2G24600 "AT2G24600" [Arabido	0.448	0.366	0.266	9.9e-22
TAIR|locus:2020833	616	AT1G03670 "AT1G03670" [Arabido	0.462	0.368	0.299	1.6e-21

TAIR|locus:2092522 ITN1 "INCREASED TOLERANCE TO NACL" [Arabidopsis thaliana (taxid:3702)]

 Score = 1897 (672.8 bits), Expect = 7.0e-196, P = 7.0e-196
 Identities = 382/491 (77%), Positives = 418/491 (85%)

Query:     1 MVGNLSGAEFDTEVAEIRSSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRK 60
             M G LSG EFD EVAEIR+S+VNEVNELGETALFTAADKGH++VV ELLKYS++E + +K
Sbjct:   101 MEGILSGEEFDAEVAEIRASIVNEVNELGETALFTAADKGHLDVVKELLKYSSRESIAKK 160

Query:    61 NRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSK 120
             NRSG+DPLHIAA+QGHHAIV+VLLDHD +LSQT GPSNATPLVSAA RGHT VVN+LLSK
Sbjct:   161 NRSGYDPLHIAAIQGHHAIVEVLLDHDATLSQTFGPSNATPLVSAAMRGHTEVVNQLLSK 220

Query:   121 DGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCE 180
              G LLEISRSN KNALH AARQGHV+V+KALLSKDPQLARR DKKGQTALHMAVKGQS E
Sbjct:   221 AGNLLEISRSNNKNALHLAARQGHVEVIKALLSKDPQLARRIDKKGQTALHMAVKGQSSE 280

Query:   181 VVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDI 240
             VVKLLL+AD AIVM PDK  NTALHVATRKKR EIV  LLSLPDTN N LTRDHKTALDI
Sbjct:   281 VVKLLLDADPAIVMQPDKSCNTALHVATRKKRAEIVELLLSLPDTNANTLTRDHKTALDI 340

Query:   241 AEGLPSSEEASEIKDCLARCGAVRANELNQPRDELRKTVTQIKKDVHTQLEQTRRTNKNV 300
             AEGLP SEE+S IK+CLAR GA+RANELNQPRDELR TVTQIK DVH QLEQT+RTNKNV
Sbjct:   341 AEGLPLSEESSYIKECLARSGALRANELNQPRDELRSTVTQIKNDVHIQLEQTKRTNKNV 400

Query:   301 HNISKELRKLHREGIXXXXXXXXXXXXXXXXXXXXSIFTVPGGDDDNGKAVVVRRASFKI 360
             HNISKELRKLHREGI                    +IFTVPGGD+++G AVVV RASFKI
Sbjct:   401 HNISKELRKLHREGINNATNSVTVVAVLFATVAFAAIFTVPGGDNNDGSAVVVGRASFKI 460

Query:   361 FFIFNAIALFTSLAVVVVQITLVRGETKAEKRVVEVINKLMWLASVCTSVAFIASSYIVV 420
             FFIFNA+ALFTSLAVVVVQITLVRGETKAEKRVVEVINKLMWLAS+CTSVAF+ASSYIVV
Sbjct:   461 FFIFNALALFTSLAVVVVQITLVRGETKAEKRVVEVINKLMWLASMCTSVAFLASSYIVV 520

Query:   421 GRRHEWAAILVTVVGGLIMAGVLGTMTYYXXXXXXXXXXXXXXXNARMRSGSNSWYPSDY 480
             GR++EWAA LVTVVGG+IMAGVLGTMTYY               +AR RSGSNSW+ SD+
Sbjct:   521 GRKNEWAAELVTVVGGVIMAGVLGTMTYYVVKSKRTRSMRKKVKSAR-RSGSNSWHHSDF 579

Query:   481 SNSEIDRIYAL 491
             SNSE+D I+A+
Sbjct:   580 SNSEVDPIFAI 590

GO:0005886 "plasma membrane" evidence=IDA

GO:0009651 "response to salt stress" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IPI

GO:0034613 "cellular protein localization" evidence=IDA

TAIR|locus:2075009 AT3G09550 [Arabidopsis thaliana (taxid:3702)]

 Score = 1715 (608.8 bits), Expect = 1.4e-176, P = 1.4e-176
 Identities = 343/494 (69%), Positives = 397/494 (80%)

Query:     1 MVGNLSGAEFDTEVAEIRSSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRK 60
             + G ++GA+FD EVA+I +SVVNEVNELGET LFTAA+KG+I+VV ELL Y+T E L +K
Sbjct:   115 ITGTITGADFDDEVAQIMTSVVNEVNELGETPLFTAAEKGNIDVVKELLPYTTIESLMQK 174

Query:    61 NRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSK 120
             N SGFD LHIA  QGH +IVQ+LL+H+P LS+T   SNATPLVSAATRGH+ VVNELL+K
Sbjct:   175 NLSGFDALHIACSQGHRSIVQLLLEHEPQLSKTVAQSNATPLVSAATRGHSEVVNELLAK 234

Query:   121 DGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCE 180
             D  LLEISRSNGKNALH AARQGHVD+V+ LL KDPQLARRTDKKGQT+LHMAVKG S +
Sbjct:   235 DSSLLEISRSNGKNALHLAARQGHVDIVRTLLDKDPQLARRTDKKGQTSLHMAVKGVSSQ 294

Query:   181 VVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDI 240
             VV+LLL AD AIVMLPDKFGNT LH+ATRKKR EIV ELL LPDTNVNALTRDHKTA DI
Sbjct:   295 VVRLLLRADPAIVMLPDKFGNTVLHIATRKKRAEIVNELLQLPDTNVNALTRDHKTAYDI 354

Query:   241 AEGLPSSEEASEIKDCLARCGAVRANELNQPRDELRKTVTQIKKDVHTQLEQTRRTNKNV 300
             AEGL  SEE +EIK+ L+RCGA++ANELNQPRDELRKTVT+IKKDVHTQLEQTR+TNKNV
Sbjct:   355 AEGLTHSEETAEIKEILSRCGALKANELNQPRDELRKTVTEIKKDVHTQLEQTRKTNKNV 414

Query:   301 HNISKELRKLHREGIXXXXXXXXXXXXXXXXXXXXSIFTVPGGDDDNGKAVVVRRASFKI 360
               I+KELRKLHR GI                    +IFTVPGGDDD+G AV+V   SFKI
Sbjct:   415 DGIAKELRKLHRAGINNATNSVTVVAVLFATVAFAAIFTVPGGDDDHGVAVMVHATSFKI 474

Query:   361 FFIFNAIALFTSLAVVVVQITLVRGETKAEKRVVEVINKLMWLASVCTSVAFIASSYIVV 420
             FFIFNAIALFTSLAVVVVQITLVRGETK E+RVVEVINKLMWLASVCT+VAFI+SSYIVV
Sbjct:   475 FFIFNAIALFTSLAVVVVQITLVRGETKTERRVVEVINKLMWLASVCTTVAFISSSYIVV 534

Query:   421 GRRHEWAAILVTVVGGLIMAGVLGTMTYYXXXXXXXXXXXXXXXNARMRSGSNSWY---P 477
             GRR+ +AA++VTV+G + M G+L  MTYY                   R+G++SW+   P
Sbjct:   535 GRRNRYAAVVVTVIGTVTMTGILSIMTYYVVKSKRTRIVRKKEKKKSARNGTSSWHHANP 594

Query:   478 SDYSNSEIDRIYAL 491
             S+ + SE++ IYA+
Sbjct:   595 SE-TESEVNPIYAI 607

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

TAIR|locus:2045233 AT2G31820 [Arabidopsis thaliana (taxid:3702)]

 Score = 927 (331.4 bits), Expect = 4.3e-93, P = 4.3e-93
 Identities = 213/505 (42%), Positives = 305/505 (60%)

Query:     3 GNLSGA-EFDTEVAEIRSSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKN 61
             GNLS   E      +    ++++ N  GET L+TAA+ GH  VV E+LK+   E  +   
Sbjct:   162 GNLSKVKELIRGCGDELKELLSKQNLEGETPLYTAAENGHSIVVEEMLKHMDLETASIAA 221

Query:    62 RSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKD 121
             R+GFDP H+AA QGH  ++++LL+  P+L+ TT  S  T L +AAT+GH  VVN LL  D
Sbjct:   222 RNGFDPFHVAAKQGHLEVLKILLETFPNLAMTTDLSCTTALHTAATQGHIDVVNLLLETD 281

Query:   122 GGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEV 181
               L +I+++NGK ALH AAR GHV+VVK+L+ KDP +  RTDKKGQTALHMAVKGQ+  +
Sbjct:   282 SNLAKIAKNNGKTALHSAARMGHVEVVKSLIGKDPSIGFRTDKKGQTALHMAVKGQNDGI 341

Query:   182 VKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 241
             V  L++ D A++ + D  GNT LH+AT K R +IV  L+S    N+N + +   T LD++
Sbjct:   342 VVELVKPDVAVLSVEDNKGNTPLHIATNKGRIKIVRCLVSFEGINLNPINKAGDTPLDVS 401

Query:   242 EGLPSSEEASEIKDCLARCGAVRANELNQPRD---ELRKTVTQIKKDVHTQLEQTRRTNK 298
             E + ++E  S +K+     GA  A +L +P++   +L++TV+ IK +V +QL+Q+R+T  
Sbjct:   402 EKIGNAELVSVLKEA----GAATAKDLGKPQNPAKQLKQTVSDIKHEVQSQLQQSRQTGV 457

Query:   299 NVHNISKELRKLHREGIXXXXXXXXXXXXXXXXXXXXSIFTVPGG-DDDN------GKAV 351
              V  I+K L+KLH  G+                    +IFT+PG  ++D       G+A 
Sbjct:   458 RVQKIAKRLKKLHISGLNNAINSATVVAVLIATVAFAAIFTIPGQYEEDRSKGELLGQAH 517

Query:   352 VVRRASFKIFFIFNAIALFTSLAVVVVQITLVRGETKAEKRVVEVINKLMWLASVCTSVA 411
             +  +A F +FFIF+++ALF SLAVVVVQ ++V  E KA+K++V VINKLMW A +  S+A
Sbjct:   518 IANKAPFLVFFIFDSLALFISLAVVVVQTSVVVIEQKAKKKLVFVINKLMWCACLFISIA 577

Query:   412 FIASSYIVVGRRHEWAAILVTVVGGLIMAGVLGTMTYYXXXXXXXXXXXXXXXNARMRSG 471
             F++ SYIVVG+   W A+  TV+GG IM   +G M Y                  R +S 
Sbjct:   578 FVSLSYIVVGKEEMWLAVCATVIGGTIMLTTIGAMCYCVVMHRMEESKLRSIRKERSKSQ 637

Query:   472 SNSW--YPSDYS--NSEID-RIYAL 491
             S S    PSD    N E + R+YAL
Sbjct:   638 SFSMSRMPSDSDILNGEYNKRMYAL 662

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2026489 AT1G07710 "AT1G07710" [Arabidopsis thaliana (taxid:3702)]

 Score = 899 (321.5 bits), Expect = 4.0e-90, P = 4.0e-90
 Identities = 212/496 (42%), Positives = 296/496 (59%)

Query:    12 TEVAEIRSSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIA 71
             T  +E+ + ++ + N+ GETAL+ AA+ G +E+V E++       +  K R+GFD  HIA
Sbjct:    50 TRESEL-NQLLGKQNQSGETALYVAAEYGDVEIVKEMINCYDLALVEIKARNGFDAFHIA 108

Query:    72 AVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSN 131
             A QG   +++VL +    L+ T   SN T L +AAT+GHT VVN LL     L  I++SN
Sbjct:   109 AKQGDLDVLKVLAEAHSELAMTVDLSNTTALHTAATQGHTEVVNFLLELGSSLAGIAKSN 168

Query:   132 GKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAA 191
             GK ALH A+R GHV V+KALL+ +P +A R DKKGQTALHMAVKG + EVV+ L++AD +
Sbjct:   169 GKTALHSASRNGHVKVIKALLASEPAIAIRMDKKGQTALHMAVKGTNVEVVEELIKADRS 228

Query:   192 IVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEAS 251
              + + D  GNTALH+A RK R++IV  LL+   T+  A+ R  +TALD AE + + E A 
Sbjct:   229 SINIADTKGNTALHIAARKGRSQIVKLLLANNMTDTKAVNRSGETALDTAEKIGNPEVAL 288

Query:   252 EI-KDCLARCGAVRANELNQPRDELRKTVTQIKKDVHTQLEQTRRTNKNVHNISKELRKL 310
              + K  +     ++ +  N P  EL++TV+ IK +VH QLE TR T K V  I+K+L K+
Sbjct:   289 ILQKHGVPSAKTIKPSGPN-PARELKQTVSDIKHEVHNQLEHTRLTRKRVQGIAKQLNKM 347

Query:   311 HREGIXXXXXXXXXXXXXXXXXXXXSIFTVPGG--DDDN--------GKAVVVRRASFKI 360
             H EG+                    +IFTVPG   +D +        G+A +     F I
Sbjct:   348 HTEGLNNAINSTTVVAVLIATVAFAAIFTVPGQYVEDTSKIPDGHSLGEANIASTTPFII 407

Query:   361 FFIFNAIALFTSLAVVVVQITLVRGETKAEKRVVEVINKLMWLASVCTSVAFIASSYIVV 420
             FFIF++IALF SLAVVVVQ ++V  E+KA+K+++ VINKLMWLA V  SVAF+A S++VV
Sbjct:   408 FFIFDSIALFISLAVVVVQTSVVVIESKAKKQMMAVINKLMWLACVLISVAFLALSFVVV 467

Query:   421 GRRHEWAAILVTVVGGLIMAGVLGTMTYYXXXXXXXXXXXXXXXNARMRSGSNSW-YP-- 477
             G   +W AI VT +G  IM   LGTM Y+                + + S S SW  P  
Sbjct:   468 GEEEKWLAIWVTAIGATIMITTLGTMCYWIIQHKIEAANLRNIRRSSINSISGSWGIPQL 527

Query:   478 --SDYSNSEIDRIYAL 491
               SD   +E  ++YA+
Sbjct:   528 TDSDILQNECKKMYAI 543

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2031948 AT1G05640 "AT1G05640" [Arabidopsis thaliana (taxid:3702)]

 Score = 887 (317.3 bits), Expect = 7.5e-89, P = 7.5e-89
 Identities = 210/494 (42%), Positives = 297/494 (60%)

Query:    14 VAEIRSSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAV 73
             + E++  + ++ N  GET L++AA+ GH  VV E+LK+   +  + K R+GFDP H+AA 
Sbjct:   139 IEELKE-LSSKQNLEGETPLYSAAENGHSLVVEEMLKHMDLDTASVKARNGFDPFHVAAK 197

Query:    74 QGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGK 133
             QGH   ++ LL+  P+L+ T   S  T L +AA++GHT VVN LL  D  L +I+++NGK
Sbjct:   198 QGHIEALKKLLETFPNLAMTVDLSCTTALHTAASQGHTDVVNLLLKTDSHLAKIAKNNGK 257

Query:   134 NALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIV 193
              ALH AAR GH +VVK+L+  D  +  RTDKKGQTALHMAVKGQ+  +V  L++ D AI+
Sbjct:   258 TALHSAARMGHREVVKSLIGNDASIGFRTDKKGQTALHMAVKGQNEGIVLELVKPDPAIL 317

Query:   194 MLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEI 253
              + D  GNT LH AT K R +IV  L+S    N+NA+ +   TALDIAE + + E  S +
Sbjct:   318 SVEDSKGNTPLHTATNKGRIKIVRCLVSFDGINLNAMNKAGDTALDIAEKIGNPELVSVL 377

Query:   254 KDCLARCGAVRANELNQPRD---ELRKTVTQIKKDVHTQLEQTRRTNKNVHNISKELRKL 310
             K+     GA  A +L +PR+   +L +TV+ IK +V +QL+Q+R+T   V  I+K L+KL
Sbjct:   378 KEA----GAATAKDLGKPRNPAKQLNQTVSDIKHEVQSQLQQSRQTGVRVRRIAKRLKKL 433

Query:   311 HREGIXXXXXXXXXXXXXXXXXXXXSIFTVPGG-DDDN-------GKAVVVRRASFKIFF 362
             H  G+                    +IFT+PG  ++D        G+A +  +A F +FF
Sbjct:   434 HINGLNNAINSATVVAVLIATVAFAAIFTIPGQYEEDRTKGLLLLGEARIAGKAPFLVFF 493

Query:   363 IFNAIALFTSLAVVVVQITLVRGETKAEKRVVEVINKLMWLASVCTSVAFIASSYIVVGR 422
             IF+++ALF SLAVVVVQ ++V  E KA+K +V VINKLMWLA +  SVAF++ S+IVVG+
Sbjct:   494 IFDSLALFISLAVVVVQTSVVVIEQKAKKNLVFVINKLMWLACLFISVAFVSLSFIVVGK 553

Query:   423 RHEWAAILVTVVGGLIMAGVLGTMTYYXXXXXXXXXXXXXXXNARMRSGSNSW--YPSDY 480
                W AI  T++GG IM   +G M Y                  R +S S S    PS+ 
Sbjct:   554 EDIWLAICATIIGGTIMLTTIGAMCYCVVMHRIEESKLKSLRKERSKSKSFSLSHMPSES 613

Query:   481 S--NSEID-RIYAL 491
                N E + R+YAL
Sbjct:   614 EILNGEFNKRMYAL 627

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2065434 AT2G01680 "AT2G01680" [Arabidopsis thaliana (taxid:3702)]

 Score = 849 (303.9 bits), Expect = 8.0e-85, P = 8.0e-85
 Identities = 196/505 (38%), Positives = 292/505 (57%)

Query:     1 MVGNLSGAEFDTEVAEIRS--SVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLT 58
             +V NL+G E   E +   +   +++  N+ GETA++ +A +   ++   L+++S+ E + 
Sbjct:    29 LVDNLTGDELIDESSPCSAVAELMSVQNDAGETAVYISAAENLEDIFRYLIRFSSLETVK 88

Query:    59 RKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELL 118
              +++S  +  H+AA +GH  IV+ LL   P L +    SN +PL +AA + H  +VN +L
Sbjct:    89 IRSKSDMNAFHVAAKRGHLGIVKELLRLWPELCRICDASNTSPLYAAAVQDHLEIVNAML 148

Query:   119 SKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQS 178
               D     I R NGK +LH A R G + +VKAL+ KD  +    DKKGQTALHMAVKG+S
Sbjct:   149 DVDPSCAMIVRKNGKTSLHTAGRYGLLRIVKALIEKDAAIVGVKDKKGQTALHMAVKGRS 208

Query:   179 CEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTAL 238
              EVV+ +L+AD  I+   D+ GNTALH+ATRK R +I + LL+     VNA+    +TA+
Sbjct:   209 LEVVEEILQADYTILNERDRKGNTALHIATRKARPQITSLLLTFTAIEVNAINNQKETAM 268

Query:   239 DIAEGLPSSEEASEIKDCLARCGAVRANELNQPRDE---LRKTVTQIKKDVHTQLEQTRR 295
             D+A+ L  SE A EI + L   GA     + +  DE   L++ V+ IK +V +QL Q  +
Sbjct:   269 DLADKLQYSESALEINEALVEAGAKHGRFIGR-EDEARALKRAVSDIKHEVQSQLLQNEK 327

Query:   296 TNKNVHNISKELRKLHREGIXXXXXXXXXXXXXXXXXXXXSIFTVPGG---DDDN-GKAV 351
             TN+ V  I+KELRKLHRE +                    +IF +PG    +  + G+A 
Sbjct:   328 TNRRVSGIAKELRKLHREAVQNTTNSITVVAVLFASIAFLAIFNLPGQYFTEGSHVGQAN 387

Query:   352 VVRRASFKIFFIFNAIALFTSLAVVVVQITLVRGETKAEKRVVEVINKLMWLASVCTSVA 411
             +  R  F++F + NA +LF SLAVVVVQITLV  +T+A+K+VV V+NKLMW A  CT  A
Sbjct:   388 IAGRTGFRVFCLLNATSLFISLAVVVVQITLVAWDTRAQKKVVSVVNKLMWAACACTFGA 447

Query:   412 FIASSYIVVGRRHEWAAILVTVVGGLIMAGVLGTMTYYXXXXXXXXXXXXXXXNARMRSG 471
             F+A ++ VVG+ + W AI +T++G  I+ G L +M Y+                 R  S 
Sbjct:   448 FLAIAFAVVGKGNSWMAITITLLGAPILVGTLASMCYFVFRQRFRSGNDSQRRIRRGSSK 507

Query:   472 SNSW----YPSDYSN-SEIDRIYAL 491
             S SW    + SD+ + S+ ++I AL
Sbjct:   508 SFSWSYSHHVSDFEDESDFEKIIAL 532

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2181768 ANK1 "ankyrin-like1" [Arabidopsis thaliana (taxid:3702)]

 Score = 808 (289.5 bits), Expect = 1.8e-80, P = 1.8e-80
 Identities = 183/440 (41%), Positives = 261/440 (59%)

Query:    24 EVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVL 83
             E N+ GETAL+ AA+ G+ ++V  L+K+S       K ++GFD  HIAA  G+  ++ VL
Sbjct:    51 EQNQSGETALYVAAEYGYTDMVKILMKHSDSVLAGTKAKNGFDAFHIAAKNGNLQVLDVL 110

Query:    84 LDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQG 143
             ++ +P LS T   S  T L +AA++GH  +V  LL K   L  I+RSNGK ALH AAR G
Sbjct:   111 IEANPELSFTFDSSKTTALHTAASQGHGEIVCFLLDKGVDLAAIARSNGKTALHSAARNG 170

Query:   144 HVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTA 203
             H  +VK L+ K   +  R DKKGQTALHMAVKGQ+ E+V +L+EAD +++   D  GNT 
Sbjct:   171 HTVIVKKLIEKKAGMVTRVDKKGQTALHMAVKGQNTEIVDVLMEADGSLINSADNKGNTP 230

Query:   204 LHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDC-LARCGA 262
             LH+A RK R EIV  +L   + +  A+ +  +TALDIAE     E    ++   +    +
Sbjct:   231 LHIAVRKNRAEIVQTVLKYCEVSRVAVNKSGETALDIAEKTGLHEIVPLLQKIGMQNARS 290

Query:   263 VRANELNQPRDELRK---TVTQIKKDVHTQLEQTRRTNKNVHNISKELRKLHREGIXXXX 319
             ++  E  +P    RK   TV++I  +VHTQLEQT RT + +  I+K + K+H EG+    
Sbjct:   291 IKPAEKVEPSGSSRKLKETVSEIGHEVHTQLEQTGRTRREIQGIAKRVNKMHTEGLNNAI 350

Query:   320 XXXXXXXXXXXXXXXXSIFTVPGG--DDDN--------GKAVVVRRASFKIFFIFNAIAL 369
                             +IF VPG   DD          G+A    R  F IF +F++ AL
Sbjct:   351 NSTTLVAILIATVAFAAIFNVPGQYTDDPKDVPPGYSLGEARAAPRPEFLIFVVFDSFAL 410

Query:   370 FTSLAVVVVQITLVRGETKAEKRVVEVINKLMWLASVCTSVAFIASSYIVVGRRHEWAAI 429
             F SLAVVVVQ ++V  E +A+K+++ +INKLMW+A +  SVAF++ S++VVG + +  A+
Sbjct:   411 FISLAVVVVQTSVVVIERRAKKQMMAIINKLMWMACIMISVAFVSLSFVVVGEKEKPLAV 470

Query:   430 LVTVVGGLIMAGVLGTMTYY 449
              VT +G LIM   LGTM Y+
Sbjct:   471 GVTAIGALIMVSTLGTMCYW 490

GO:0005886 "plasma membrane" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

DICTYBASE|DDB_G0276013 DDB_G0276013 "cyclin-like F-box containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 291 (107.5 bits), Expect = 6.9e-23, P = 6.9e-23
 Identities = 92/275 (33%), Positives = 133/275 (48%)

Query:    17 IRSSVVNEVN-ELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQG 75
             +R+    E N   G TAL  A  KGH+E    L+  + K  +  KN++G  PLH AA +G
Sbjct:   465 LRNGADIETNTRSGFTALHMACGKGHVEAAESLILANAK--IECKNKNGSTPLHTAAQKG 522

Query:    76 HHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNA 135
             H  +V++L+ H  ++ + T  +  TPL SAA  GHT VV  LL  +  +  I++ NG   
Sbjct:   523 HVRVVELLITHGANI-EATNINGVTPLNSAAHNGHTEVVRCLLEHNANMEAINK-NGITP 580

Query:   136 LHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAI--- 192
             L+ AA +GH  VV+ LL     +   T   G T L+++ +    E+V LLLE  A +   
Sbjct:   581 LYSAAHRGHYKVVECLLEYKANIEGTTKNHGATPLYISAQEGYTEIVNLLLENRANVEAK 640

Query:   193 VMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASE 252
             +    + G T L+ A  +   +IV ELL     N     R+  T L  A    SSE    
Sbjct:   641 IRSGMRCGATPLYTACHRGHVDIV-ELLLKYKANTQVTDRNGSTPLHKA----SSEGHVS 695

Query:   253 IKDCLARCGA---VRANELNQPRDELRKTVTQIKK 284
             + +CL    A    RA +   P D   K V +I K
Sbjct:   696 VVECLLNHNADIKARARDGLCPLDVAHKNVKKILK 730

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

TAIR|locus:2046628 AT2G24600 "AT2G24600" [Arabidopsis thaliana (taxid:3702)]

 Score = 171 (65.3 bits), Expect = 9.9e-22, Sum P(2) = 9.9e-22
 Identities = 63/236 (26%), Positives = 102/236 (43%)

Query:    14 VAEIRSSVVNEVNE---LGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHI 70
             + E R S + E +E      T L  AA  GH E+V ++++      L+ +N  G  PLH+
Sbjct:    19 LVEARESSLEERSEEQNTNNTVLHVAAKLGHRELVAKIIELRPSL-LSSRNAYGDTPLHL 77

Query:    71 AAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRS 130
             AA+ G   IV  +LD    L       N TPL       H A V+  +     ++E + S
Sbjct:    78 AALLGDVNIVMQMLDTGLELYSARNNKNQTPL-------HLAFVSIFMEAAKFIVEKTNS 130

Query:   131 NGKNALHFAARQGHVDVVKALLSKDPQLARRT-----DKKGQTALHMAVKGQSCEVVKLL 185
                + L+FA   G   +V  +L + P+LAR+      D    T LH A      E+  +L
Sbjct:   131 VDLDELNFALSSGSTCIVGIILERFPELARKNAWEVEDGSRSTLLHYACDKGDLELTSIL 190

Query:   186 LEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 241
             L  +  +    +  G + LH+A ++    I+ E +     +    T   +T   +A
Sbjct:   191 LGLNQGLEEALNSKGLSPLHLAVQRGSVIILEEFMDKSPLSFCVRTPSKETVFHLA 246

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2020833 AT1G03670 "AT1G03670" [Arabidopsis thaliana (taxid:3702)]

 Score = 228 (85.3 bits), Expect = 1.6e-21, Sum P(2) = 1.6e-21
 Identities = 71/237 (29%), Positives = 116/237 (48%)

Query:    14 VAEIRSSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAV 73
             +  ++  V  + N    + L+ A + G+ E+V ++L+ S+   +     SG   +H A  
Sbjct:   165 LVSVKHDVSFDKNNDEASPLYMAVEAGYHELVLKMLESSSSPSILASMFSGKSVIHAAMK 224

Query:    74 QGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSK-D---GGLLEISR 129
                  I+ ++L  DP L +       T L   A+ G    +  +L++ D     L  ++ 
Sbjct:   225 ANRRDILGIVLRQDPGLIELRNEEGRTCLSYGASMGCYEGIRYILAEFDKAASSLCYVAD 284

Query:   130 SNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMA-VKGQSCEVVKLLLEA 188
              +G   +H AA++GHV ++K  L   P      + + Q   H+A + G+S +VVK LL+ 
Sbjct:   285 DDGFTPIHMAAKEGHVRIIKEFLKHCPDSRELLNNQCQNIFHVAAIAGKS-KVVKYLLKL 343

Query:   189 DAAIVML--PDKFGNTALHVATRKKRTEIVTELLSLPD-TNVNALTRDHKTALDIAE 242
             D    M+   D  GNT LH+AT K R  IV  +L+  D  N+ AL  +  TALDIAE
Sbjct:   344 DEGKRMMNEQDINGNTPLHLAT-KHRYPIVVNMLTWNDGINLRALNNEGFTALDIAE 399

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9C7A2	Y3236_ARATH	No assigned EC number	0.8411	0.9979	0.8305	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_Genewise1_v1.C_LG_X2383 hypothetical protein (492 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	491
pfam13962	114	pfam13962, PGG, Domain of unknown function	1e-29
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	2e-27
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	1e-24
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	1e-24
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	3e-17
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	3e-16
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	9e-16
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	2e-15
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	5e-13
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	1e-12
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	1e-10
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	4e-10
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	5e-10
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	1e-09
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	4e-09
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	4e-08
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	4e-08
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	5e-08
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	7e-08
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	2e-07
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	3e-07
PHA02736	154	PHA02736, PHA02736, Viral ankyrin protein; Provisi	3e-07
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	6e-07
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	7e-07
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	1e-06
TIGR00870	743	TIGR00870, trp, transient-receptor-potential calci	1e-06
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	3e-06
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	5e-06
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	7e-06
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	7e-06
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	1e-05
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	1e-05
PHA02741	169	PHA02741, PHA02741, hypothetical protein; Provisio	1e-05
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	7e-05
PRK00733	666	PRK00733, hppA, membrane-bound proton-translocatin	2e-04
pfam00023	33	pfam00023, Ank, Ankyrin repeat	2e-04
PHA02743	166	PHA02743, PHA02743, Viral ankyrin protein; Provisi	2e-04
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	3e-04
TIGR00870	743	TIGR00870, trp, transient-receptor-potential calci	4e-04
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	5e-04
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	8e-04
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	9e-04
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	0.001
smart00248	30	smart00248, ANK, ankyrin repeats	0.001
pfam13606	30	pfam13606, Ank_3, Ankyrin repeat	0.001
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	0.002
pfam00023	33	pfam00023, Ank, Ankyrin repeat	0.002
pfam00023	33	pfam00023, Ank, Ankyrin repeat	0.002
pfam00335	221	pfam00335, Tetraspannin, Tetraspanin family	0.002
pfam03030	669	pfam03030, H_PPase, Inorganic H+ pyrophosphatase	0.002
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	0.002

>gnl|CDD|222475 pfam13962, PGG, Domain of unknown function

 Score =  111 bits (281), Expect = 1e-29
 Identities = 40/115 (34%), Positives = 59/115 (51%), Gaps = 8/115 (6%)

Query: 312 REGINNATNSVTVVAVLFATVAFASIFTVPGG------DDDNGKAVVV-RRASFKIFFIF 364
            E +    NS+ VVA L ATV FA+ FT PGG          G  ++  +   FK FF+ 
Sbjct: 1   SEWLEKTRNSLLVVATLIATVTFAAGFTPPGGYWQDDGGHHAGTPILAGKPRRFKAFFVS 60

Query: 365 NAIALFTSLAVVVVQITLVRGETKAEKRVVEVINKLMWLASVCTSVAFIASSYIV 419
           N IA   SL  V++ + +V   ++   R++  +  L+WL+ +   VAF A SY V
Sbjct: 61  NTIAFVASLVAVILLLYIVPSFSRRLPRLL-ALLTLLWLSLLSLMVAFAAGSYRV 114

The PGG domain is named for the highly conserved sequence motif found at the startt of the domain. The function is not known. Length = 114

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score =  106 bits (266), Expect = 2e-27
 Identities = 50/121 (41%), Positives = 68/121 (56%), Gaps = 3/121 (2%)

Query: 100 TPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLA 159
           TPL  AA+ GH  VV  LL   G  +    ++G+  LH AA+ GH+++VK LL K   + 
Sbjct: 9   TPLHLAASNGHLEVVKLLLEN-GADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADV- 66

Query: 160 RRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTEL 219
              DK G T LH+A +  + +VVKLLL+   A V   DK G T LH+A +    E+V  L
Sbjct: 67  NARDKDGNTPLHLAARNGNLDVVKLLLKHG-ADVNARDKDGRTPLHLAAKNGHLEVVKLL 125

Query: 220 L 220
           L
Sbjct: 126 L 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 98.2 bits (245), Expect = 1e-24
 Identities = 50/130 (38%), Positives = 68/130 (52%), Gaps = 4/130 (3%)

Query: 23  NEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQV 82
           N  +E G T L  AA  GH+EVV  LL+      +  K+  G  PLH+AA  GH  IV++
Sbjct: 1   NARDEDGRTPLHLAASNGHLEVVKLLLENGAD--VNAKDNDGRTPLHLAAKNGHLEIVKL 58

Query: 83  LLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQ 142
           LL+    ++        TPL  AA  G+  VV  LL   G  +     +G+  LH AA+ 
Sbjct: 59  LLEKGADVNARD-KDGNTPLHLAARNGNLDVVKLLLKH-GADVNARDKDGRTPLHLAAKN 116

Query: 143 GHVDVVKALL 152
           GH++VVK LL
Sbjct: 117 GHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 98.2 bits (245), Expect = 1e-24
 Identities = 47/112 (41%), Positives = 63/112 (56%), Gaps = 3/112 (2%)

Query: 130 SNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEAD 189
            +G+  LH AA  GH++VVK LL     +  + D  G+T LH+A K    E+VKLLLE  
Sbjct: 5   EDGRTPLHLAASNGHLEVVKLLLENGADVNAK-DNDGRTPLHLAAKNGHLEIVKLLLEKG 63

Query: 190 AAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 241
            A V   DK GNT LH+A R    ++V  LL     +VNA  +D +T L +A
Sbjct: 64  -ADVNARDKDGNTPLHLAARNGNLDVVKLLLKH-GADVNARDKDGRTPLHLA 113

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 76.5 bits (189), Expect = 3e-17
 Identities = 42/95 (44%), Positives = 55/95 (57%), Gaps = 7/95 (7%)

Query: 136 LHFAARQGHVDVVKALLSKDPQL-ARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVM 194
           LH AA+ G++++VK LL K   +    TD    TALH+A +  + E+VKLLLE  A +  
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDTD----TALHLAARNGNLEIVKLLLEHGADVNA 56

Query: 195 LPDKFGNTALHVATRKKRTEIVTELLSL-PDTNVN 228
             DK GNTALH+A R    EIV  LL    D N+ 
Sbjct: 57  -KDKDGNTALHLAARNGNLEIVKLLLEHGADINLK 90

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 73.8 bits (182), Expect = 3e-16
 Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 4/94 (4%)

Query: 68  LHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEI 127
           LH+AA  G+  +V++LL+    +         T L  AA  G+  +V  LL   G  +  
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADV---NLGDTDTALHLAARNGNLEIVKLLLEH-GADVNA 56

Query: 128 SRSNGKNALHFAARQGHVDVVKALLSKDPQLARR 161
              +G  ALH AAR G++++VK LL     +  +
Sbjct: 57  KDKDGNTALHLAARNGNLEIVKLLLEHGADINLK 90

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 72.3 bits (178), Expect = 9e-16
 Identities = 36/91 (39%), Positives = 51/91 (56%), Gaps = 4/91 (4%)

Query: 102 LVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARR 161
           L  AA  G+  +V  LL K     +++  +   ALH AAR G++++VK LL     +   
Sbjct: 1   LHLAAKNGNLELVKLLLEKGA---DVNLGDTDTALHLAARNGNLEIVKLLLEHGADV-NA 56

Query: 162 TDKKGQTALHMAVKGQSCEVVKLLLEADAAI 192
            DK G TALH+A +  + E+VKLLLE  A I
Sbjct: 57  KDKDGNTALHLAARNGNLEIVKLLLEHGADI 87

Length = 91

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 72.0 bits (177), Expect = 2e-15
 Identities = 34/80 (42%), Positives = 42/80 (52%), Gaps = 2/80 (2%)

Query: 162 TDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLS 221
            D+ G+T LH+A      EVVKLLLE   A V   D  G T LH+A +    EIV  LL 
Sbjct: 3   RDEDGRTPLHLAASNGHLEVVKLLLENG-ADVNAKDNDGRTPLHLAAKNGHLEIVKLLLE 61

Query: 222 LPDTNVNALTRDHKTALDIA 241
               +VNA  +D  T L +A
Sbjct: 62  K-GADVNARDKDGNTPLHLA 80

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 70.5 bits (173), Expect = 5e-13
 Identities = 61/215 (28%), Positives = 97/215 (45%), Gaps = 33/215 (15%)

Query: 33  LFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHA-----IVQVLLDHD 87
           L+ A +  +I+VV  LL        + KN S   PLH  +   ++      IV++LL++ 
Sbjct: 39  LYLAKEARNIDVVKILLDNGADINSSTKNNST--PLHYLSNIKYNLTDVKEIVKLLLEYG 96

Query: 88  PSLSQTTGPSNATPLVSAATR--GHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHV 145
            +++        TPL+ A ++     ++V  LL   G  + I  S+G+N LH       +
Sbjct: 97  ANVNAPDNNGI-TPLLYAISKKSNSYSIVEYLLDN-GANVNIKNSDGENLLHLYLESNKI 154

Query: 146 D--VVKALLSK--DPQLARR-------------TDKKGQTALHMAVKGQSCEVVKLLLE- 187
           D  ++K L+ K  D     R              D  G T LH AV   + E VK LL+ 
Sbjct: 155 DLKILKLLIDKGVDINAKNRVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDL 214

Query: 188 -ADAAIVMLPDKFGNTALHVATRKKRTEIVTELLS 221
            A+  +V   +K+G+T LH+A      EI   LL+
Sbjct: 215 GANPNLV---NKYGDTPLHIAILNNNKEIFKLLLN 246

Length = 422

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 67.2 bits (163), Expect = 1e-12
 Identities = 51/211 (24%), Positives = 82/211 (38%), Gaps = 9/211 (4%)

Query: 26  NELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLD 85
           ++   +AL          ++  LL   + +     ++     L +A +        +L  
Sbjct: 1   SKPSLSALLLINKCFLDLLLVALLLLLSLDLSNPSDKKLNLYLELALLPAASLSELLLKL 60

Query: 86  HDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGH- 144
                          PL SAA++G   +V  LL+  G  +    ++G   LH AA  G+ 
Sbjct: 61  IVDRHLAARDLDGRLPLHSAASKGDDKIVKLLLA-SGADVNAKDADGDTPLHLAALNGNP 119

Query: 145 ----VDVVKALLSK--DPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDK 198
               ++V K LL    D  +    D+ G T LH A      ++V+LLLEA A      + 
Sbjct: 120 PEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADP-NSRNS 178

Query: 199 FGNTALHVATRKKRTEIVTELLSLPDTNVNA 229
           +G TAL  A +  R E+V  LL         
Sbjct: 179 YGVTALDPAAKNGRIELVKLLLDKGLHLSLL 209

Length = 235

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 61.4 bits (148), Expect = 1e-10
 Identities = 45/164 (27%), Positives = 68/164 (41%), Gaps = 10/164 (6%)

Query: 31  TALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGH-----HAIVQVLLD 85
             L +AA KG  ++V  LL       +  K+  G  PLH+AA+ G+       + ++LL+
Sbjct: 75  LPLHSAASKGDDKIVKLLLASG--ADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLE 132

Query: 86  H--DPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQG 143
              D  ++        TPL  AA  G   +V  LL   G       S G  AL  AA+ G
Sbjct: 133 AGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEA-GADPNSRNSYGVTALDPAAKNG 191

Query: 144 HVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLE 187
            +++VK LL K   L+         A     K     +  L++ 
Sbjct: 192 RIELVKLLLDKGLHLSLLKFNLEGVANANVSKRNILNLTSLIIA 235

Length = 235

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 54.9 bits (133), Expect = 4e-10
 Identities = 26/53 (49%), Positives = 35/53 (66%), Gaps = 1/53 (1%)

Query: 134 NALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLL 186
            ALH AA  G +++VK LL K   +  RTD+ G TALH+A +  + EV+KLLL
Sbjct: 3   TALHKAAISGRLELVKYLLEKGVDIN-RTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 55.7 bits (135), Expect = 5e-10
 Identities = 22/63 (34%), Positives = 37/63 (58%), Gaps = 2/63 (3%)

Query: 31 TALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSL 90
          TAL  AA  G++E+V  LL++     +  K++ G   LH+AA  G+  IV++LL+H   +
Sbjct: 30 TALHLAARNGNLEIVKLLLEHGAD--VNAKDKDGNTALHLAARNGNLEIVKLLLEHGADI 87

Query: 91 SQT 93
          +  
Sbjct: 88 NLK 90

Length = 91

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 55.5 bits (134), Expect = 1e-09
 Identities = 24/63 (38%), Positives = 38/63 (60%), Gaps = 2/63 (3%)

Query: 22  VNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQ 81
           VN  ++ G T L  AA  G+++VV  LLK+     +  +++ G  PLH+AA  GH  +V+
Sbjct: 66  VNARDKDGNTPLHLAARNGNLDVVKLLLKHGAD--VNARDKDGRTPLHLAAKNGHLEVVK 123

Query: 82  VLL 84
           +LL
Sbjct: 124 LLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 52.4 bits (126), Expect = 4e-09
 Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 1/57 (1%)

Query: 151 LLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVA 207
           LL   P     TD  G T LH+A K  + E+V+ LL+    +  L D  G TAL +A
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDL-NLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 55.3 bits (133), Expect = 4e-08
 Identities = 42/164 (25%), Positives = 69/164 (42%), Gaps = 6/164 (3%)

Query: 79  IVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHF 138
           I ++LL +   ++        T L  A       +   LLS    +    ++N  + LH 
Sbjct: 149 ITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTN-NSPLHH 207

Query: 139 AARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAV-KGQSCEVVKLLLEADAAIVMLPD 197
           A +  +  +V  LL        R DK G T LH++V   +  +++KLLLE    +     
Sbjct: 208 AVKHYNKPIVHILLENGASTDAR-DKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSY 266

Query: 198 KFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 241
             G TALH + + +R     +LL     ++N+L     T L  A
Sbjct: 267 ILGLTALHSSIKSER---KLKLLLEYGADINSLNSYKLTPLSSA 307

Length = 477

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 55.0 bits (132), Expect = 4e-08
 Identities = 49/211 (23%), Positives = 87/211 (41%), Gaps = 10/211 (4%)

Query: 30  ETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPS 89
           + AL  A   G +++   LL           +  G  P+ +A        +++L+ H  +
Sbjct: 3   QVALCDAILFGELDIARRLLDIGINPNFEIYD--GISPIKLAMKFRDSEAIKLLMKHG-A 59

Query: 90  LSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVK 149
           +     P   + L  A   G    V ELL       ++   +G   LH A     +D++K
Sbjct: 60  IPDVKYPDIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMK 119

Query: 150 ALLSK--DPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVA 207
            L+++  DP +   TDK   + LH+AV     + ++LL++  A +  + D  G T L +A
Sbjct: 120 LLIARGADPDIP-NTDKF--SPLHLAVMMGDIKGIELLIDHKACL-DIEDCCGCTPLIIA 175

Query: 208 TRKKRTEIVTELLSLPDTNVNALTRDHKTAL 238
             K    I   LL     N++   ++   A 
Sbjct: 176 MAKGDIAICKMLLD-SGANIDYFGKNGCVAA 205

Length = 413

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 50.3 bits (121), Expect = 5e-08
 Identities = 34/72 (47%), Positives = 42/72 (58%), Gaps = 4/72 (5%)

Query: 170 LHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNA 229
           LH+A K  + E+VKLLLE  A  V L D   +TALH+A R    EIV  LL     +VNA
Sbjct: 1   LHLAAKNGNLELVKLLLEKGA-DVNLGDT--DTALHLAARNGNLEIVKLLLEH-GADVNA 56

Query: 230 LTRDHKTALDIA 241
             +D  TAL +A
Sbjct: 57  KDKDGNTALHLA 68

Length = 91

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 48.5 bits (116), Expect = 7e-08
 Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 117 LLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMA 173
           LL      L  +  NG   LH AA+ G +++V+ LL K        D  G TAL +A
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLL-KPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 53.3 bits (128), Expect = 2e-07
 Identities = 56/220 (25%), Positives = 91/220 (41%), Gaps = 11/220 (5%)

Query: 33  LFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQ 92
           L T A  G+  ++ ELLK      +   +  G  PLHIAA +G+   V VLL H  ++  
Sbjct: 529 LLTVASTGNAALLEELLKAKLDPDIG--DSKGRTPLHIAASKGYEDCVLVLLKHACNVHI 586

Query: 93  TTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSN-GKNALHFAARQGHVDVVKAL 151
                N T L +A +  H  +   L         IS  +   + L  AA++  +  +K L
Sbjct: 587 RDANGN-TALWNAISAKHHKIFRILYH----FASISDPHAAGDLLCTAAKRNDLTAMKEL 641

Query: 152 LSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLE--ADAAIVMLPDKFGNTALHVATR 209
           L +   +    D +G TAL +A+     ++V+LL+   AD       D F  T L    +
Sbjct: 642 LKQGLNVDSE-DHQGATALQVAMAEDHVDMVRLLIMNGADVDKANTDDDFSPTELRELLQ 700

Query: 210 KKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEE 249
           K+       ++     +   L RD  +     +G  S  +
Sbjct: 701 KRELGHSITIVDSVPADEPDLGRDGGSRPGRLQGTSSDNQ 740

Length = 823

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 52.4 bits (126), Expect = 3e-07
 Identities = 58/221 (26%), Positives = 83/221 (37%), Gaps = 39/221 (17%)

Query: 22  VNEVNELGETALFTAADK--GHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHH-- 77
           VN  +  G T L  A  K      +V  LL       +  KN  G + LH+         
Sbjct: 99  VNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGAN--VNIKNSDGENLLHLYLESNKIDL 156

Query: 78  AIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALH 137
            I+++L+D                 ++A  R     VN LLS  G  + I    G   LH
Sbjct: 157 KILKLLIDK-----------GVD--INAKNR-----VNYLLSY-GVPINIKDVYGFTPLH 197

Query: 138 FAARQGHVDVVKALLSK--DPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEA------- 188
           +A    + + VK LL    +P L    +K G T LH+A+   + E+ KLLL         
Sbjct: 198 YAVYNNNPEFVKYLLDLGANPNL---VNKYGDTPLHIAILNNNKEIFKLLLNNGPSIKTI 254

Query: 189 DAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNA 229
              ++   DK  NT   +   KK   I+   L  P    N 
Sbjct: 255 IETLLYFKDKDLNTITKIKMLKK--SIMYMFLLDPGFYKNR 293

Length = 422

>gnl|CDD|165103 PHA02736, PHA02736, Viral ankyrin protein; Provisional

 Score = 49.9 bits (119), Expect = 3e-07
 Identities = 36/117 (30%), Positives = 56/117 (47%), Gaps = 7/117 (5%)

Query: 132 GKNALHFAARQGHV-DVV---KALLSKDPQLARRTDKKGQTALHMAV---KGQSCEVVKL 184
           G+N LH+  R G V D++    A+  ++  L    ++ G+  +H+     K    E +KL
Sbjct: 17  GENILHYLCRNGGVTDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKL 76

Query: 185 LLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 241
           L+E  A I      FGNT LH+A   +  E+ T L + P  N+  L    KT   +A
Sbjct: 77  LMEWGADINGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVA 133

Length = 154

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 45.8 bits (109), Expect = 6e-07
 Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 1/57 (1%)

Query: 185 LLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 241
           LLE     +   D  GNT LH+A +    E+V  LL     ++N    D  TALD+A
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPG-VDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 51.1 bits (122), Expect = 7e-07
 Identities = 54/252 (21%), Positives = 97/252 (38%), Gaps = 45/252 (17%)

Query: 22  VNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQ 81
           VN  +   +T L  A  KG +E +  L +Y     +  ++ +G  P+HIA       I++
Sbjct: 117 VNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNI--EDDNGCYPIHIAIKHNFFDIIK 174

Query: 82  VLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAAR 141
           +LL+                                    G    +  +NG++ LH AA 
Sbjct: 175 LLLE-----------------------------------KGAYANVKDNNGESPLHNAAE 199

Query: 142 QGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGN 201
            G    +K L+     +  +  K G T LH A+   +   ++LL+  + A +   D  G+
Sbjct: 200 YGDYACIKLLIDHGNHIMNKC-KNGFTPLHNAII-HNRSAIELLI--NNASINDQDIDGS 255

Query: 202 TALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCG 261
           T LH A        + ++L     +++      +  +D A       +   IKD +A   
Sbjct: 256 TPLHHAINPPCDIDIIDILLYHKADISIKDNKGENPIDTA--FKYINKDPVIKDIIA--N 311

Query: 262 AVRANELNQPRD 273
           AV   E ++ +D
Sbjct: 312 AVLIKEADKLKD 323

Length = 434

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 50.0 bits (119), Expect = 1e-06
 Identities = 28/126 (22%), Positives = 54/126 (42%), Gaps = 3/126 (2%)

Query: 29  GETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDP 88
           G T L  A     ++++  L+       +   ++  F PLH+A + G    +++L+DH  
Sbjct: 102 GMTPLHLATILKKLDIMKLLIARGADPDIPNTDK--FSPLHLAVMMGDIKGIELLIDHKA 159

Query: 89  SLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVV 148
            L         TPL+ A  +G  A+   LL     +    ++    AL +A     +D+V
Sbjct: 160 CLDIEDC-CGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIV 218

Query: 149 KALLSK 154
           +  + +
Sbjct: 219 RLFIKR 224

Length = 413

>gnl|CDD|233161 TIGR00870, trp, transient-receptor-potential calcium channel protein

 Score = 50.8 bits (122), Expect = 1e-06
 Identities = 39/138 (28%), Positives = 54/138 (39%), Gaps = 23/138 (16%)

Query: 71  AAVQGHHAIVQVLLDHDPSLSQ-TTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISR 129
           AA +G  A V   L+    L+         + L  AA       + ELL        +  
Sbjct: 24  AAERGDLASVYRDLEEPKKLNINCPDRLGRSALFVAAIENENLELTELLLNLSCRGAV-- 81

Query: 130 SNGKNALHFAARQGHVDVVKALLS---------------KDPQLARRTDKKGQTALHMAV 174
             G   LH A    +VD V+A+L                 D   +  T   G TALH+A 
Sbjct: 82  --GDTLLH-AISLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFT--PGITALHLAA 136

Query: 175 KGQSCEVVKLLLEADAAI 192
             Q+ E+VKLLLE  A++
Sbjct: 137 HRQNYEIVKLLLERGASV 154

The Transient Receptor Potential Ca2+ Channel (TRP-CC) Family (TC. 1.A.4)The TRP-CC family has also been called the store-operated calcium channel (SOC) family. The prototypical members include the Drosophila retinal proteinsTRP and TRPL (Montell and Rubin, 1989; Hardie and Minke, 1993). SOC members of the family mediate the entry of extracellular Ca2+ into cells in responseto depletion of intracellular Ca2+ stores (Clapham, 1996) and agonist stimulated production of inositol-1,4,5 trisphosphate (IP3). One member of the TRP-CCfamily, mammalian Htrp3, has been shown to form a tight complex with the IP3 receptor (TC #1.A.3.2.1). This interaction is apparently required for IP3 tostimulate Ca2+ release via Htrp3. The vanilloid receptor subtype 1 (VR1), which is the receptor for capsaicin (the ?hot? ingredient in chili peppers) and servesas a heat-activated ion channel in the pain pathway (Caterina et al., 1997), is also a member of this family. The stretch-inhibitable non-selective cation channel(SIC) is identical to the vanilloid receptor throughout all of its first 700 residues, but it exhibits a different sequence in its last 100 residues. VR1 and SICtransport monovalent cations as well as Ca2+. VR1 is about 10x more permeable to Ca2+ than to monovalent ions. Ca2+ overload probably causes cell deathafter chronic exposure to capsaicin. (McCleskey and Gold, 1999) [Transport and binding proteins, Cations and iron carrying compounds]. Length = 743

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 43.8 bits (104), Expect = 3e-06
 Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 2/54 (3%)

Query: 31 TALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLL 84
          TAL  AA  G +E+V  LL+      + R +  G   LHIAA  G+  ++++LL
Sbjct: 3  TALHKAAISGRLELVKYLLEKGVD--INRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 43.4 bits (103), Expect = 5e-06
 Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 5/55 (9%)

Query: 100 TPLVSAATRGHTAVVNELLSKDGGLLEISR--SNGKNALHFAARQGHVDVVKALL 152
           T L  AA  G   +V  LL K    ++I+R   +G  ALH AA  G+++V+K LL
Sbjct: 3   TALHKAAISGRLELVKYLLEKG---VDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 43.0 bits (102), Expect = 7e-06
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 1/55 (1%)

Query: 64  GFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELL 118
           G   LH AA+ G   +V+ LL+    +++T      T L  AA  G+  V+  LL
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVDINRTDE-DGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 48.3 bits (115), Expect = 7e-06
 Identities = 40/126 (31%), Positives = 59/126 (46%), Gaps = 10/126 (7%)

Query: 29  GETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDP 88
           G T L  AA KG+ + V  LLK++    +  ++ +G   L  A    HH I ++L  H  
Sbjct: 558 GRTPLHIAASKGYEDCVLVLLKHACNVHI--RDANGNTALWNAISAKHHKIFRILY-HFA 614

Query: 89  SLS--QTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVD 146
           S+S     G      L +AA R     + ELL K G  ++     G  AL  A  + HVD
Sbjct: 615 SISDPHAAGDL----LCTAAKRNDLTAMKELL-KQGLNVDSEDHQGATALQVAMAEDHVD 669

Query: 147 VVKALL 152
           +V+ L+
Sbjct: 670 MVRLLI 675

Length = 823

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 47.7 bits (113), Expect = 1e-05
 Identities = 36/143 (25%), Positives = 58/143 (40%), Gaps = 24/143 (16%)

Query: 100 TPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKD---- 155
           TPL+ A   G   +V EL  K G  +    +   + L  A + G  D++K L+       
Sbjct: 37  TPLIDAIRSGDAKIV-ELFIKHGADINHINTKIPHPLLTAIKIGAHDIIKLLIDNGVDTS 95

Query: 156 ----PQLARRT--------------DKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPD 197
               P + +                D + +T LH A+K    E +K+L E  A  V + D
Sbjct: 96  ILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGAD-VNIED 154

Query: 198 KFGNTALHVATRKKRTEIVTELL 220
             G   +H+A +    +I+  LL
Sbjct: 155 DNGCYPIHIAIKHNFFDIIKLLL 177

Length = 434

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 47.3 bits (113), Expect = 1e-05
 Identities = 59/234 (25%), Positives = 91/234 (38%), Gaps = 30/234 (12%)

Query: 23  NEVNELGETALF---TAADKGHIEVVNELLKYSTKEGLTRKNRSGFD--PLHIAAVQGHH 77
             V+ + E AL+     A    +E V  LL      G     R  +   PLH+       
Sbjct: 5   ESVDIIMEAALYDYLLNASNVTVEEVRRLLAA----GADVNFRGEYGKTPLHLYLHYSSE 60

Query: 78  A---IVQVLLDH--DPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNG 132
               IV++LL+   D +  +  G    TPL        T  V +LL K G  +      G
Sbjct: 61  KVKDIVRLLLEAGADVNAPERCG---FTPLHLYLYNATTLDVIKLLIKAGADVNAKDKVG 117

Query: 133 KNALHFAAR--QGHVDVVKALLSK--DPQLARRTDKKGQTALHMAVKGQSC--EVVKLLL 186
           +  LH        +  V++ LL K  D       D  G T L + +K ++   E+++LL+
Sbjct: 118 RTPLHVYLSGFNINPKVIRLLLRKGADV---NALDLYGMTPLAVLLKSRNANVELLRLLI 174

Query: 187 EADAAIVMLPDKFGNTALHV--ATRKKRTEIVTELLSLPDTNVNALTRDHKTAL 238
           +A A +  + D    + LH    + K R  IV EL+     +  A      T L
Sbjct: 175 DAGADVYAV-DDRFRSLLHHHLQSFKPRARIVRELIRA-GCDPAATDMLGNTPL 226

Length = 471

>gnl|CDD|165108 PHA02741, PHA02741, hypothetical protein; Provisional

 Score = 45.0 bits (106), Expect = 1e-05
 Identities = 31/122 (25%), Positives = 53/122 (43%), Gaps = 9/122 (7%)

Query: 130 SNGKNALHFAARQGHVDVVKALL-----SKDPQLARRTDKKGQTALHMAV----KGQSCE 180
           S G+N  H AAR G  D++                  TD  GQ  +H+A        + E
Sbjct: 19  SEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAE 78

Query: 181 VVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDI 240
           ++  L+E  A I       G+TALH+A  ++  ++   L   P  +++    D+K+  ++
Sbjct: 79  IIDHLIELGADINAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFEL 138

Query: 241 AE 242
           A 
Sbjct: 139 AI 140

Length = 169

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 44.0 bits (103), Expect = 7e-05
 Identities = 25/102 (24%), Positives = 39/102 (38%), Gaps = 2/102 (1%)

Query: 17  IRSSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGH 76
               V N  +E G T L  AA  G  ++V  LL+         +N  G   L  AA  G 
Sbjct: 135 ADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAG--ADPNSRNSYGVTALDPAAKNGR 192

Query: 77  HAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELL 118
             +V++LLD    LS            + + R    + + ++
Sbjct: 193 IELVKLLLDKGLHLSLLKFNLEGVANANVSKRNILNLTSLII 234

Length = 235

>gnl|CDD|234827 PRK00733, hppA, membrane-bound proton-translocating pyrophosphatase; Validated

 Score = 43.2 bits (103), Expect = 2e-04
 Identities = 24/143 (16%), Positives = 54/143 (37%), Gaps = 23/143 (16%)

Query: 323 TVVAVLFATVAFASIFTVPGGDDDNGKAVVVRRASFKIF-FIFNAIALFTSLAVVVVQIT 381
           +    + A +   +              V+        F  +  A+ +  S    ++ I 
Sbjct: 211 SYAVTIVAAMVLGAAAADAAFGV---AGVL--------FPLLIAAVGIIAS----IIGIF 255

Query: 382 LVRGETKAEKRVVEVINKLMWLASVCTSVAFIASSYIVVG---RRHEWAAILVTVVGGLI 438
            VR         ++ +N+ + + +V + V    ++Y ++G       W  +   V+ GL+
Sbjct: 256 FVR--LGKGGNPMKALNRGLIVTAVLSIVLTYFATYWLLGDGADGFTWLNLFGAVLIGLV 313

Query: 439 MAGVLGTMT-YYVVKSKR-VRSI 459
           +  ++G +T YY     R V+ I
Sbjct: 314 VGALIGLITEYYTSTEYRPVKEI 336

Length = 666

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 37.9 bits (89), Expect = 2e-04
 Identities = 13/24 (54%), Positives = 16/24 (66%)

Query: 131 NGKNALHFAARQGHVDVVKALLSK 154
           +G   LH AAR GH++VVK LL  
Sbjct: 1   DGNTPLHLAARNGHLEVVKLLLEA 24

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|222925 PHA02743, PHA02743, Viral ankyrin protein; Provisional

 Score = 41.3 bits (97), Expect = 2e-04
 Identities = 34/116 (29%), Positives = 49/116 (42%), Gaps = 8/116 (6%)

Query: 133 KNALHFAARQGHV----DVVKALLSKDPQLARRTDKKGQTALHMAVK-GQSCEVVK--LL 185
           +N      R G++    +V    +S D  L  R D  G+   HM     ++  V+K  LL
Sbjct: 21  QNTFLRICRTGNIYELMEVA-PFISGDGHLLHRYDHHGRQCTHMVAWYDRANAVMKIELL 79

Query: 186 LEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 241
           +   A I       GNT LH+A   K  E+   L      N+ A+   H+TA  IA
Sbjct: 80  VNMGADINARELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIA 135

Length = 166

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 43.0 bits (101), Expect = 3e-04
 Identities = 29/91 (31%), Positives = 38/91 (41%), Gaps = 4/91 (4%)

Query: 163 DKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSL 222
           D  G+T LH+A      +VV++LLE  A   +L DK G T L +A      E+V  L   
Sbjct: 112 DYDGRTPLHIACANGHVQVVRVLLEFGADPTLL-DKDGKTPLELAEENGFREVVQLLSRH 170

Query: 223 PDTNVNALTRDHKTALDIAEGLPSSEEASEI 253
              +            D   G P S E S I
Sbjct: 171 SQCHFEL---GANAKPDSFTGKPPSLEDSPI 198

Length = 664

>gnl|CDD|233161 TIGR00870, trp, transient-receptor-potential calcium channel protein

 Score = 42.8 bits (101), Expect = 4e-04
 Identities = 53/208 (25%), Positives = 78/208 (37%), Gaps = 47/208 (22%)

Query: 16  EIRSSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAA--- 72
           E +   +N  + LG +ALF AA +     + ELL   +  G           LH  +   
Sbjct: 39  EPKKLNINCPDRLGRSALFVAAIENENLELTELLLNLSCRGAVGDTL-----LHAISLEY 93

Query: 73  VQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNG 132
           V    AI+  LL      S     +N     S  T G T                     
Sbjct: 94  VDAVEAILLHLLAAFRK-SGPLELAND-QYTSEFTPGIT--------------------- 130

Query: 133 KNALHFAARQGHVDVVKALLSKDPQL-AR-------RTDKK-----GQTALHMAVKGQSC 179
             ALH AA + + ++VK LL +   + AR       ++        G++ L+ A    S 
Sbjct: 131 --ALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSP 188

Query: 180 EVVKLLLEADAAIVMLPDKFGNTALHVA 207
            +V LL E D A ++  D  GNT LH+ 
Sbjct: 189 SIVALLSE-DPADILTADSLGNTLLHLL 215

The Transient Receptor Potential Ca2+ Channel (TRP-CC) Family (TC. 1.A.4)The TRP-CC family has also been called the store-operated calcium channel (SOC) family. The prototypical members include the Drosophila retinal proteinsTRP and TRPL (Montell and Rubin, 1989; Hardie and Minke, 1993). SOC members of the family mediate the entry of extracellular Ca2+ into cells in responseto depletion of intracellular Ca2+ stores (Clapham, 1996) and agonist stimulated production of inositol-1,4,5 trisphosphate (IP3). One member of the TRP-CCfamily, mammalian Htrp3, has been shown to form a tight complex with the IP3 receptor (TC #1.A.3.2.1). This interaction is apparently required for IP3 tostimulate Ca2+ release via Htrp3. The vanilloid receptor subtype 1 (VR1), which is the receptor for capsaicin (the ?hot? ingredient in chili peppers) and servesas a heat-activated ion channel in the pain pathway (Caterina et al., 1997), is also a member of this family. The stretch-inhibitable non-selective cation channel(SIC) is identical to the vanilloid receptor throughout all of its first 700 residues, but it exhibits a different sequence in its last 100 residues. VR1 and SICtransport monovalent cations as well as Ca2+. VR1 is about 10x more permeable to Ca2+ than to monovalent ions. Ca2+ overload probably causes cell deathafter chronic exposure to capsaicin. (McCleskey and Gold, 1999) [Transport and binding proteins, Cations and iron carrying compounds]. Length = 743

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 42.2 bits (99), Expect = 5e-04
 Identities = 51/200 (25%), Positives = 80/200 (40%), Gaps = 11/200 (5%)

Query: 39  KGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSN 98
             +IE ++    YST   L       F PLH A    +  +V+ LL    +++Q     +
Sbjct: 17  LKYIEYIDHTENYSTSASLIP-----FIPLHQAVEARNLDVVKSLLTRGHNVNQP-DHRD 70

Query: 99  ATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQL 158
            TPL       +   + E++     + + S      A+  A    +V++ K +L+   + 
Sbjct: 71  LTPLHIICKEPNKLGMKEMIRS---INKCSVFYTLVAIKDAFNNRNVEIFKIILTNRYKN 127

Query: 159 ARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTE 218
            +  D                E+ KLLL   A I M     GNTALH AT  K   + TE
Sbjct: 128 IQTIDLV-YIDKKSKDDIIEAEITKLLLSYGADINMKDRHKGNTALHYATENKDQRL-TE 185

Query: 219 LLSLPDTNVNALTRDHKTAL 238
           LL     NVN   + + + L
Sbjct: 186 LLLSYGANVNIPDKTNNSPL 205

Length = 477

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 37.3 bits (87), Expect = 8e-04
 Identities = 22/57 (38%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 83  LLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFA 139
           LL+H P     T  +  TPL  AA  G   +V  LL K G  L +  S+G  AL  A
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLL-KPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 41.4 bits (97), Expect = 9e-04
 Identities = 32/98 (32%), Positives = 48/98 (48%), Gaps = 2/98 (2%)

Query: 146 DVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALH 205
           ++ K LLS    +  +   KG TALH A + +   + +LLL +  A V +PDK  N+ LH
Sbjct: 148 EITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLL-SYGANVNIPDKTNNSPLH 206

Query: 206 VATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEG 243
            A +     IV  LL     + +A  +   T L I+ G
Sbjct: 207 HAVKHYNKPIVHILLE-NGASTDARDKCGNTPLHISVG 243

Length = 477

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 40.7 bits (95), Expect = 0.001
 Identities = 25/58 (43%), Positives = 32/58 (55%), Gaps = 5/58 (8%)

Query: 131 NGKNALHFAARQGHVDVVKALLS--KDPQLARRTDKKGQTALHMAVKGQSCEVVKLLL 186
           +G+  LH A   GHV VV+ LL    DP L    DK G+T L +A +    EVV+LL 
Sbjct: 114 DGRTPLHIACANGHVQVVRVLLEFGADPTL---LDKDGKTPLELAEENGFREVVQLLS 168

Length = 664

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 36.0 bits (84), Expect = 0.001
 Identities = 12/26 (46%), Positives = 17/26 (65%)

Query: 131 NGKNALHFAARQGHVDVVKALLSKDP 156
           +G+  LH AA  G+++VVK LL K  
Sbjct: 1   DGRTPLHLAAENGNLEVVKLLLDKGA 26

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat

 Score = 35.7 bits (83), Expect = 0.001
 Identities = 11/28 (39%), Positives = 17/28 (60%)

Query: 131 NGKNALHFAARQGHVDVVKALLSKDPQL 158
           +G   LH AAR G++++VK LL     +
Sbjct: 1   DGNTPLHLAARNGNLELVKLLLEHGADI 28

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Length = 30

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 36.8 bits (86), Expect = 0.002
 Identities = 13/30 (43%), Positives = 20/30 (66%)

Query: 22 VNEVNELGETALFTAADKGHIEVVNELLKY 51
          VN  ++ G TAL  AA  G++E+V  LL++
Sbjct: 54 VNAKDKDGNTALHLAARNGNLEIVKLLLEH 83

Length = 91

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 35.6 bits (83), Expect = 0.002
 Identities = 15/28 (53%), Positives = 18/28 (64%)

Query: 165 KGQTALHMAVKGQSCEVVKLLLEADAAI 192
            G T LH+A +    EVVKLLLEA A +
Sbjct: 1   DGNTPLHLAARNGHLEVVKLLLEAGADV 28

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 35.6 bits (83), Expect = 0.002
 Identities = 11/31 (35%), Positives = 18/31 (58%)

Query: 64 GFDPLHIAAVQGHHAIVQVLLDHDPSLSQTT 94
          G  PLH+AA  GH  +V++LL+    ++   
Sbjct: 2  GNTPLHLAARNGHLEVVKLLLEAGADVNARD 32

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|215864 pfam00335, Tetraspannin, Tetraspanin family

 Score = 39.7 bits (93), Expect = 0.002
 Identities = 23/137 (16%), Positives = 51/137 (37%), Gaps = 17/137 (12%)

Query: 360 IFFIFNAIALFTSLAVVVVQITLVRGETKAEKRVVEVINKLMWLASVCTSVAFIASSYI- 418
           + F+ N + L   LA++ V I L+          +    + +++  +   V  +   ++ 
Sbjct: 5   LLFLLNLLFLLLGLALLAVGIWLLVIAKDYLAIALNDSIRALYILIIVLGVIILLVGFLG 64

Query: 419 VVGRRHEWAAILVTVVGGLIM-------AGVLGTMTYYVVKSKRVRSIRKREKNARMRSG 471
             G   E   +L+T    L++       AG+L     +V + K   S+++      +   
Sbjct: 65  CCGAIKESRCLLLTYFILLLILFILEIAAGILA----FVYRDKLESSLKE-----GLNYK 115

Query: 472 SNSWYPSDYSNSEIDRI 488
             S+         ID +
Sbjct: 116 DKSYNDDPNLTEAIDEL 132

Length = 221

>gnl|CDD|217327 pfam03030, H_PPase, Inorganic H+ pyrophosphatase

 Score = 40.5 bits (96), Expect = 0.002
 Identities = 26/142 (18%), Positives = 57/142 (40%), Gaps = 21/142 (14%)

Query: 323 TVVAVLFATVAFASIFTVPGGDDDNGKAVVVRRASFKIFFIFNAIALFTSLAVVVVQITL 382
           +    + A +   +      G D     V+          +  A+ +  S+         
Sbjct: 225 SYAVTIVAAMVLGAAL---FGADGVQAGVL-------FPLLVAAVGIIASIIGTF----F 270

Query: 383 VRGETKAEKRVVEVINKLMWLASVCTSVAFIASSYIVVG---RRHEWAAILVTVVGGLIM 439
           VR  T      ++ +N+ + ++++ + VA   ++Y ++    +   W  + + V+ GL+ 
Sbjct: 271 VR--TGKGANPMKALNRGLIVSAILSIVATYFATYWLLPAAGKGFLWWNLFLAVLIGLVA 328

Query: 440 AGVLGTMT-YYVVKSKR-VRSI 459
             ++G +T YY   S R VR I
Sbjct: 329 GALIGLITEYYTSTSYRPVREI 350

The H+ pyrophosphatase is an transmembrane proton pump involved in establishing the H+ electrochemical potential difference between the vacuole lumen and the cell cytosol. Vacuolar-type H(+)-translocating inorganic pyrophosphatases have long been considered to be restricted to plants and to a few species of photo-trophic bacteria. However, in recent investigations, these pyrophosphatases have been found in organisms as disparate as thermophilic Archaea and parasitic protists. Length = 669

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 40.4 bits (94), Expect = 0.002
 Identities = 35/122 (28%), Positives = 59/122 (48%), Gaps = 8/122 (6%)

Query: 100 TPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLA 159
           TP+  AA RG+  +VN LLS  G  + I   +  + L  A    ++D +KA++       
Sbjct: 180 TPIHYAAERGNAKMVNLLLSY-GADVNIIALDDLSVLECAVDSKNIDTIKAIIDN----- 233

Query: 160 RRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKR-TEIVTE 218
           R    K   +L  A++ +  E   LL +A  ++  + D   NT LH A++    + +V +
Sbjct: 234 RSNINKNDLSLLKAIRNEDLETSLLLYDAGFSVNSI-DDCKNTPLHHASQAPSLSRLVPK 292

Query: 219 LL 220
           LL
Sbjct: 293 LL 294

Length = 682

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	491
PHA02874	434	ankyrin repeat protein; Provisional	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
KOG0510	929	consensus Ankyrin repeat protein [General function	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
PHA02876	682	ankyrin repeat protein; Provisional	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
PHA02876	682	ankyrin repeat protein; Provisional	100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
KOG0510	929	consensus Ankyrin repeat protein [General function	100.0
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	100.0
PHA02798	489	ankyrin-like protein; Provisional	99.98
PHA02989	494	ankyrin repeat protein; Provisional	99.98
PHA02989	494	ankyrin repeat protein; Provisional	99.98
PHA02798	489	ankyrin-like protein; Provisional	99.97
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.97
PHA02917	661	ankyrin-like protein; Provisional	99.96
KOG0508	615	consensus Ankyrin repeat protein [General function	99.96
PHA02859	209	ankyrin repeat protein; Provisional	99.96
PHA02859	209	ankyrin repeat protein; Provisional	99.95
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.95
PHA02792	631	ankyrin-like protein; Provisional	99.95
PHA02730	672	ankyrin-like protein; Provisional	99.95
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.95
PHA02730	672	ankyrin-like protein; Provisional	99.95
KOG0508	615	consensus Ankyrin repeat protein [General function	99.95
PHA02795	437	ankyrin-like protein; Provisional	99.95
PHA02917	661	ankyrin-like protein; Provisional	99.94
PHA02795	437	ankyrin-like protein; Provisional	99.93
PHA02792	631	ankyrin-like protein; Provisional	99.93
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.93
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.92
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.92
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.92
PF13962	113	PGG: Domain of unknown function	99.92
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.91
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.91
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.9
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.88
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.86
PHA02741	169	hypothetical protein; Provisional	99.86
KOG0514	452	consensus Ankyrin repeat protein [General function	99.85
PHA02743	166	Viral ankyrin protein; Provisional	99.84
KOG0514	452	consensus Ankyrin repeat protein [General function	99.84
PHA02743	166	Viral ankyrin protein; Provisional	99.83
PHA02736	154	Viral ankyrin protein; Provisional	99.83
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.82
PHA02741	169	hypothetical protein; Provisional	99.82
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.82
PHA02884	300	ankyrin repeat protein; Provisional	99.81
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.8
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.79
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.79
PHA02736	154	Viral ankyrin protein; Provisional	99.78
PHA02884	300	ankyrin repeat protein; Provisional	99.78
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.75
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.74
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.7
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.68
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.68
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.66
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.65
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.61
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.55
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.48
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.43
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.36
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.34
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.32
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.3
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.29
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.28
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.25
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.25
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.24
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.24
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.23
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.72
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.63
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.59
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.59
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.59
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.57
KOG0522	560	consensus Ankyrin repeat protein [General function	98.53
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.51
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.47
PF13606	30	Ank_3: Ankyrin repeat	98.47
PF13606	30	Ank_3: Ankyrin repeat	98.45
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.45
KOG0522	560	consensus Ankyrin repeat protein [General function	98.29
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.24
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.22
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.18
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.13
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.03
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.94
KOG0511	516	consensus Ankyrin repeat protein [General function	97.93
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.81
KOG0521	785	consensus Putative GTPase activating proteins (GAP	97.77
KOG0511	516	consensus Ankyrin repeat protein [General function	97.75
KOG2384	223	consensus Major histocompatibility complex protein	97.7
KOG0521	785	consensus Putative GTPase activating proteins (GAP	97.69
KOG2384	223	consensus Major histocompatibility complex protein	97.59
KOG2505	591	consensus Ankyrin repeat protein [General function	96.75
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.26
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.08
KOG2505	591	consensus Ankyrin repeat protein [General function	94.61
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	92.79
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	92.09
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	91.88
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	91.23
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	88.16
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	84.01

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.5e-35  Score=305.09  Aligned_cols=265  Identities=23%  Similarity=0.284  Sum_probs=234.4

Q ss_pred             ChhhhHHHHHhhchhhhhccCCCCCCHHHHHHHcCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHh
Q 011183            6 SGAEFDTEVAEIRSSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLD   85 (491)
Q Consensus         6 ~~~~~~~~~~~~~~~~l~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~   85 (491)
                      +..+...++++..+..++..+.+|.||||.|+..|+.++|++|++.|++  ++..+..|.||||.|+..|+.+++++|++
T Consensus        12 gd~~~v~~ll~~~~~~~n~~~~~~~tpL~~A~~~g~~~iv~~Ll~~Ga~--~n~~~~~~~t~L~~A~~~~~~~iv~~Ll~   89 (434)
T PHA02874         12 GDIEAIEKIIKNKGNCINISVDETTTPLIDAIRSGDAKIVELFIKHGAD--INHINTKIPHPLLTAIKIGAHDIIKLLID   89 (434)
T ss_pred             CCHHHHHHHHHcCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCC--CCCCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            4457788888888999999999999999999999999999999999876  56788899999999999999999999999


Q ss_pred             cCCCC----------------------cccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcC
Q 011183           86 HDPSL----------------------SQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQG  143 (491)
Q Consensus        86 ~~~~l----------------------~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g  143 (491)
                      +|++.                      .+..+..|.||||+|+..|+.+++++|++. +.+++..|.+|.||||+|+..|
T Consensus        90 ~g~~~~~~~~~~~~~~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~-gad~n~~d~~g~tpLh~A~~~~  168 (434)
T PHA02874         90 NGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEY-GADVNIEDDNGCYPIHIAIKHN  168 (434)
T ss_pred             CCCCCCcchhccCCHHHHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhC-CCCCCCcCCCCCCHHHHHHHCC
Confidence            87653                      245678899999999999999999999987 5678889999999999999999


Q ss_pred             CHHHHHHHHhCCcccccccCCCCCCHHHHHHhCCCHHHHHHHHhcCcccccCCCCCCChHHHHHHHcCcHHHHHHHhcCC
Q 011183          144 HVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLP  223 (491)
Q Consensus       144 ~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~~~~~iv~~Ll~~~  223 (491)
                      +.+++++|+++++++ +..|..|.||||+|+..|+.+++++|++.|++ ++.++..|.||||.|+..++ +.+++|+.  
T Consensus       169 ~~~iv~~Ll~~g~~~-n~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~~-i~~~~~~g~TpL~~A~~~~~-~~i~~Ll~--  243 (434)
T PHA02874        169 FFDIIKLLLEKGAYA-NVKDNNGESPLHNAAEYGDYACIKLLIDHGNH-IMNKCKNGFTPLHNAIIHNR-SAIELLIN--  243 (434)
T ss_pred             cHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCC-CcCCCCCCCCHHHHHHHCCh-HHHHHHHc--
Confidence            999999999999887 67899999999999999999999999999998 67789999999999999865 56677764  


Q ss_pred             CCCcccccCCCCCHHHHHhhCCCchhhHHHHHHHHHcCccccccCCCchHHHHHHHHH
Q 011183          224 DTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVRANELNQPRDELRKTVTQ  281 (491)
Q Consensus       224 g~~~~~~d~~G~t~L~~A~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~l~~~~~~  281 (491)
                      |++++.+|..|+||||+|+..+.   ..+++++|++.|+..+...+.+.+++..+...
T Consensus       244 ~~~in~~d~~G~TpLh~A~~~~~---~~~iv~~Ll~~gad~n~~d~~g~TpL~~A~~~  298 (434)
T PHA02874        244 NASINDQDIDGSTPLHHAINPPC---DIDIIDILLYHKADISIKDNKGENPIDTAFKY  298 (434)
T ss_pred             CCCCCCcCCCCCCHHHHHHhcCC---cHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHh
Confidence            88999999999999999997543   23588999999999887777788888776554

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=6.5e-36  Score=285.95  Aligned_cols=220  Identities=21%  Similarity=0.216  Sum_probs=193.5

Q ss_pred             hccCCCCCCHHHHHHHcCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCCHH
Q 011183           23 NEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPL  102 (491)
Q Consensus        23 ~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL  102 (491)
                      +..|.+|.||||+|+..|+.++++.|++.+++.  +..  +|.||||+|+..|+.+++++|+++|+++ +..|..|.|||
T Consensus        24 ~~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~--n~~--d~~TpLh~Aa~~g~~eiV~lLL~~Gadv-n~~d~~G~TpL   98 (284)
T PHA02791         24 FKADVHGHSALYYAIADNNVRLVCTLLNAGALK--NLL--ENEFPLHQAATLEDTKIVKILLFSGMDD-SQFDDKGNTAL   98 (284)
T ss_pred             CCCCCCCCcHHHHHHHcCCHHHHHHHHHCcCCC--cCC--CCCCHHHHHHHCCCHHHHHHHHHCCCCC-CCCCCCCCCHH
Confidence            578999999999999999999999999988763  333  4789999999999999999999999997 67889999999


Q ss_pred             HHHHHcCCHHHHHHHHhcCCCcccccCCCCC-cHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCCHHHHHHhCCCHHH
Q 011183          103 VSAATRGHTAVVNELLSKDGGLLEISRSNGK-NALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEV  181 (491)
Q Consensus       103 ~~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~-tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~~~~i  181 (491)
                      |+|+..|+.++++.|++. +.+++..+..|+ ||||+|+..|+.+++++|++++++..+  ...|.||||+|+++|+.++
T Consensus        99 h~Aa~~g~~eivk~Ll~~-gadin~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~~d--~~~g~TpLh~Aa~~g~~ei  175 (284)
T PHA02791         99 YYAVDSGNMQTVKLFVKK-NWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFD--LAILLSCIHITIKNGHVDM  175 (284)
T ss_pred             HHHHHcCCHHHHHHHHHC-CCCcCccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCcccc--cccCccHHHHHHHcCCHHH
Confidence            999999999999999988 456777888884 899999999999999999998775421  1358999999999999999


Q ss_pred             HHHHHhcCcccccCCCCCCChH-HHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCchhhHHHHHHHHHc
Q 011183          182 VKLLLEADAAIVMLPDKFGNTA-LHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARC  260 (491)
Q Consensus       182 v~~Ll~~~~~~~~~~d~~G~Tp-Lh~A~~~~~~~iv~~Ll~~~g~~~~~~d~~G~t~L~~A~~~~~~~~~~~i~~~L~~~  260 (491)
                      +++|+++|++ ++.+|..|.|| ||+|+..|+.+++++|++ .|++++.+|..| ++|+.+          ++.++|++.
T Consensus       176 v~lLL~~gAd-~n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~-~Ga~in~~~~~~-~~l~~~----------e~~~~ll~~  242 (284)
T PHA02791        176 MILLLDYMTS-TNTNNSLLFIPDIKLAIDNKDLEMLQALFK-YDINIYSVNLEN-VLLDDA----------EIAKMIIEK  242 (284)
T ss_pred             HHHHHHCCCC-CCcccCCCCChHHHHHHHcCCHHHHHHHHH-CCCCCccCcccC-ccCCCH----------HHHHHHHHh
Confidence            9999999998 78899999987 999999999999999999 899999999955 777443          477777776


Q ss_pred             Ccc
Q 011183          261 GAV  263 (491)
Q Consensus       261 ga~  263 (491)
                      .+.
T Consensus       243 ~~~  245 (284)
T PHA02791        243 HVE  245 (284)
T ss_pred             hhh
Confidence            543

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=7e-37  Score=257.68  Aligned_cols=211  Identities=29%  Similarity=0.414  Sum_probs=188.9

Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHhccCccccccC-CCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCCHHHHHH
Q 011183           28 LGETALFTAADKGHIEVVNELLKYSTKEGLTRK-NRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAA  106 (491)
Q Consensus        28 ~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~-~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~  106 (491)
                      .+.++.+.++......-|+.+++...+. ++.+ |.+|+||||+||..|+.+++++|++...-..+..|..||||||.|+
T Consensus         2 e~~~~~~~~~~~~~~~kveel~~s~~kS-L~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~   80 (226)
T KOG4412|consen    2 EYASLGKAICENCEEFKVEELIQSDPKS-LNARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAA   80 (226)
T ss_pred             CccchHHHHHhhchHHHHHHHHhcChhh-hhccccccCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhh
Confidence            3578889999999999999999876533 4444 4499999999999999999999996433334667899999999999


Q ss_pred             HcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCCHHHHHHhCCCHHHHHHHH
Q 011183          107 TRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLL  186 (491)
Q Consensus       107 ~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~~~~iv~~Ll  186 (491)
                      ..|+.++|+.|+.+.+.+++.....|.||||+|+..|+.+|+++|+++++.+ +.+|..|+||||-|+.-|+.+++++|+
T Consensus        81 s~g~~evVk~Ll~r~~advna~tn~G~T~LHyAagK~r~eIaqlLle~ga~i-~~kD~~~qtplHRAAavGklkvie~Li  159 (226)
T KOG4412|consen   81 SNGNDEVVKELLNRSGADVNATTNGGQTCLHYAAGKGRLEIAQLLLEKGALI-RIKDKQGQTPLHRAAAVGKLKVIEYLI  159 (226)
T ss_pred             hcCcHHHHHHHhcCCCCCcceecCCCcceehhhhcCChhhHHHHHHhcCCCC-cccccccCchhHHHHhccchhhHHHHH
Confidence            9999999999999988899999999999999999999999999999999776 888999999999999999999999999


Q ss_pred             hcCcccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhh
Q 011183          187 EADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEG  243 (491)
Q Consensus       187 ~~~~~~~~~~d~~G~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~d~~G~t~L~~A~~  243 (491)
                      ..++. .|.+|+.|+||||.|...|+.++...|++ .|++++..|++| ||+..+..
T Consensus       160 ~~~a~-~n~qDk~G~TpL~~al~e~~~d~a~lLV~-~gAd~~~edke~-t~~~~a~~  213 (226)
T KOG4412|consen  160 SQGAP-LNTQDKYGFTPLHHALAEGHPDVAVLLVR-AGADTDREDKEG-TALRIACN  213 (226)
T ss_pred             hcCCC-CCcccccCccHHHHHHhccCchHHHHHHH-hccceeeccccC-chHHHHHH
Confidence            99987 89999999999999988999999999999 799999999999 99887753

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.1e-35  Score=250.44  Aligned_cols=196  Identities=33%  Similarity=0.438  Sum_probs=177.6

Q ss_pred             hhHHHHHhhchhhhhccCC-CCCCHHHHHHHcCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhc-
Q 011183            9 EFDTEVAEIRSSVVNEVNE-LGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDH-   86 (491)
Q Consensus         9 ~~~~~~~~~~~~~l~~~~~-~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~-   86 (491)
                      ..+.|.++..+..+|.+|. +|+||||+||..|+.+++++|++ ..+..++.+|..|+||||+|+..|+-++|+.|+.+ 
T Consensus        17 ~kveel~~s~~kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLls-q~nv~~ddkDdaGWtPlhia~s~g~~evVk~Ll~r~   95 (226)
T KOG4412|consen   17 FKVEELIQSDPKSLNARDDQDGRTPLHWACSFGHVEIVYFLLS-QPNVKPDDKDDAGWTPLHIAASNGNDEVVKELLNRS   95 (226)
T ss_pred             HHHHHHHhcChhhhhccccccCCceeeeeeecCchhHHHHHHh-cCCCCCCCccccCCchhhhhhhcCcHHHHHHHhcCC
Confidence            4456777777766777777 89999999999999999999997 45566788899999999999999999999999999 


Q ss_pred             CCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhCCcccccccCCCC
Q 011183           87 DPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKG  166 (491)
Q Consensus        87 ~~~l~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g  166 (491)
                      ++++ +..+..|.||||||+..|+.+++++|+++ ++.++..|..|.||||-|+.-|..+++++|+..++.+ +.+|+.|
T Consensus        96 ~adv-na~tn~G~T~LHyAagK~r~eIaqlLle~-ga~i~~kD~~~qtplHRAAavGklkvie~Li~~~a~~-n~qDk~G  172 (226)
T KOG4412|consen   96 GADV-NATTNGGQTCLHYAAGKGRLEIAQLLLEK-GALIRIKDKQGQTPLHRAAAVGKLKVIEYLISQGAPL-NTQDKYG  172 (226)
T ss_pred             CCCc-ceecCCCcceehhhhcCChhhHHHHHHhc-CCCCcccccccCchhHHHHhccchhhHHHHHhcCCCC-CcccccC
Confidence            8887 78889999999999999999999999998 5889999999999999999999999999999999776 8899999


Q ss_pred             CCHHHHHHhCCCHHHHHHHHhcCcccccCCCCCCChHHHHHHHc
Q 011183          167 QTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRK  210 (491)
Q Consensus       167 ~t~Lh~Aa~~~~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~  210 (491)
                      +||||.|...|+.++..+|+++|++ ....|+.| ||+..|+-.
T Consensus       173 ~TpL~~al~e~~~d~a~lLV~~gAd-~~~edke~-t~~~~a~~~  214 (226)
T KOG4412|consen  173 FTPLHHALAEGHPDVAVLLVRAGAD-TDREDKEG-TALRIACNE  214 (226)
T ss_pred             ccHHHHHHhccCchHHHHHHHhccc-eeeccccC-chHHHHHHH
Confidence            9999999888899999999999998 77889988 998887643

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=2.7e-34  Score=299.37  Aligned_cols=272  Identities=20%  Similarity=0.236  Sum_probs=237.8

Q ss_pred             hhHHHHHhhchhhhhccCCCCCCHHHHHHHcC---CHHHHHHHHhccCccccccCCCCCChHHHHHHHcC-cHHHHHHHH
Q 011183            9 EFDTEVAEIRSSVVNEVNELGETALFTAADKG---HIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQG-HHAIVQVLL   84 (491)
Q Consensus         9 ~~~~~~~~~~~~~l~~~~~~g~T~Lh~Aa~~g---~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g-~~~iv~~Ll   84 (491)
                      +....++ ..++++|..|..|.||||+|+..|   +.++++.|++.|++  ++..+..|.||||+|+..| +.+++++|+
T Consensus        28 ~~v~~Ll-~~ga~vn~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gad--in~~~~~g~TpLh~A~~~~~~~~iv~lLl  104 (471)
T PHA03095         28 EEVRRLL-AAGADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGAD--VNAPERCGFTPLHLYLYNATTLDVIKLLI  104 (471)
T ss_pred             HHHHHHH-HcCCCcccCCCCCCCHHHHHHHhcCCChHHHHHHHHHCCCC--CCCCCCCCCCHHHHHHHcCCcHHHHHHHH
Confidence            3344444 468999999999999999999999   99999999999877  6778889999999999999 599999999


Q ss_pred             hcCCCCcccCCCCCCCHHHHHH--HcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcC--CHHHHHHHHhCCccccc
Q 011183           85 DHDPSLSQTTGPSNATPLVSAA--TRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQG--HVDVVKALLSKDPQLAR  160 (491)
Q Consensus        85 ~~~~~l~~~~~~~g~tpL~~A~--~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g--~~~iv~~Ll~~~~~~~~  160 (491)
                      ++|+++ +..|..|.||||+|+  ..++.++++.|++. +.+++..|..|.||||+|+..+  +.++++.|++++++...
T Consensus       105 ~~ga~i-n~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~-gad~~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~~  182 (471)
T PHA03095        105 KAGADV-NAKDKVGRTPLHVYLSGFNINPKVIRLLLRK-GADVNALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYA  182 (471)
T ss_pred             HcCCCC-CCCCCCCCCHHHHHhhCCcCCHHHHHHHHHc-CCCCCccCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCcc
Confidence            999997 778899999999999  55689999999988 6678889999999999999876  68999999999999844


Q ss_pred             ccCCCCCCHHHHHHhC--CCHHHHHHHHhcCcccccCCCCCCChHHHHHHHcCcH--HHHHHHhcCCCCCcccccCCCCC
Q 011183          161 RTDKKGQTALHMAVKG--QSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRT--EIVTELLSLPDTNVNALTRDHKT  236 (491)
Q Consensus       161 ~~d~~g~t~Lh~Aa~~--~~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~~~~--~iv~~Ll~~~g~~~~~~d~~G~t  236 (491)
                       .|..|+||||.++..  ++.++++.|++.|++ ++.+|..|+||||+|+..++.  .+++.|++ .|+++|.+|..|+|
T Consensus       183 -~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~-~~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~-~g~din~~d~~g~T  259 (471)
T PHA03095        183 -VDDRFRSLLHHHLQSFKPRARIVRELIRAGCD-PAATDMLGNTPLHSMATGSSCKRSLVLPLLI-AGISINARNRYGQT  259 (471)
T ss_pred             -cCCCCCCHHHHHHHHCCCcHHHHHHHHHcCCC-CcccCCCCCCHHHHHHhcCCchHHHHHHHHH-cCCCCCCcCCCCCC
Confidence             499999999999864  788999999999999 889999999999999999875  57888888 79999999999999


Q ss_pred             HHHHHhhCCCchhhHHHHHHHHHcCccccccCCCchHHHHHHHHHhhhhhhhhhHH
Q 011183          237 ALDIAEGLPSSEEASEIKDCLARCGAVRANELNQPRDELRKTVTQIKKDVHTQLEQ  292 (491)
Q Consensus       237 ~L~~A~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~  292 (491)
                      |||+|+..++.    ++++.|++.|+..+.....+.+++..+......+..+.+.+
T Consensus       260 pLh~A~~~~~~----~~v~~LL~~gad~n~~~~~g~tpl~~A~~~~~~~~v~~LL~  311 (471)
T PHA03095        260 PLHYAAVFNNP----RACRRLIALGADINAVSSDGNTPLSLMVRNNNGRAVRAALA  311 (471)
T ss_pred             HHHHHHHcCCH----HHHHHHHHcCCCCcccCCCCCCHHHHHHHhCCHHHHHHHHH
Confidence            99999987665    47888999999988777788888888877666666555543

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=7.2e-34  Score=290.96  Aligned_cols=241  Identities=20%  Similarity=0.268  Sum_probs=197.5

Q ss_pred             hhHHHHHhhchhhhhccCCCCCCHHHHHHHcCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcC--cHHHHHHHHhc
Q 011183            9 EFDTEVAEIRSSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQG--HHAIVQVLLDH   86 (491)
Q Consensus         9 ~~~~~~~~~~~~~l~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g--~~~iv~~Ll~~   86 (491)
                      +++..++ ..+.++|.+|.+|.||||+|+..|+.++|+.|+++|++  ++.+|..|.||||+|+..+  +.+++++|+++
T Consensus        53 ~iv~~Ll-~~Gadvn~~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAd--in~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~  129 (446)
T PHA02946         53 RFVEELL-HRGYSPNETDDDGNYPLHIASKINNNRIVAMLLTHGAD--PNACDKQHKTPLYYLSGTDDEVIERINLLVQY  129 (446)
T ss_pred             HHHHHHH-HCcCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCcCC--CCCCCCCCCCHHHHHHHcCCchHHHHHHHHHc
Confidence            3444444 47899999999999999999999999999999999876  5778999999999998876  48999999999


Q ss_pred             CCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcC--CHHHHHHHHhCCcccccccCC
Q 011183           87 DPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQG--HVDVVKALLSKDPQLARRTDK  164 (491)
Q Consensus        87 ~~~l~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g--~~~iv~~Ll~~~~~~~~~~d~  164 (491)
                      |+++....|..|.|||| |+..|+.++++.|++. +.+++..|..|+||||.|+..+  +.+++++|++.|.++ +..|.
T Consensus       130 Gadin~~~d~~g~tpL~-aa~~~~~~vv~~Ll~~-gad~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadi-n~~d~  206 (446)
T PHA02946        130 GAKINNSVDEEGCGPLL-ACTDPSERVFKKIMSI-GFEARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISP-SKPDH  206 (446)
T ss_pred             CCCcccccCCCCCcHHH-HHHCCChHHHHHHHhc-cccccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCC-cccCC
Confidence            99986667889999997 6677899999999987 6678889999999999988754  468999999999987 77889


Q ss_pred             CCCCHHHHHHhCC--CHHHHHHHHhcCcccccCCCCCCChHHHHHHHcCc-HHHHHHHhcCCCCCc--------------
Q 011183          165 KGQTALHMAVKGQ--SCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKR-TEIVTELLSLPDTNV--------------  227 (491)
Q Consensus       165 ~g~t~Lh~Aa~~~--~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~~~-~~iv~~Ll~~~g~~~--------------  227 (491)
                      +|+||||+|+.++  +.+++++|++ +++ ++.+|..|+||||+|+..++ .++++.|+. .|.+.              
T Consensus       207 ~G~TpLH~Aa~~~~~~~~iv~lLl~-gad-in~~d~~G~TpLh~A~~~~~~~~~~~~Ll~-~g~~~~~~~~~~a~~~~~~  283 (446)
T PHA02946        207 DGNTPLHIVCSKTVKNVDIINLLLP-STD-VNKQNKFGDSPLTLLIKTLSPAHLINKLLS-TSNVITDQTVNICIFYDRD  283 (446)
T ss_pred             CCCCHHHHHHHcCCCcHHHHHHHHc-CCC-CCCCCCCCCCHHHHHHHhCChHHHHHHHHh-CCCCCCCcHHHHHHHcCch
Confidence            9999999999875  7889998885 776 78889999999999999887 478888887 44432              


Q ss_pred             ------ccc-cCCCCCHHHHHhhCCCchhhHHHHHHHHHcCc
Q 011183          228 ------NAL-TRDHKTALDIAEGLPSSEEASEIKDCLARCGA  262 (491)
Q Consensus       228 ------~~~-d~~G~t~L~~A~~~~~~~~~~~i~~~L~~~ga  262 (491)
                            +.. +..|+||||+|+..++.+    ++++|++.|+
T Consensus       284 ~~~e~l~~~g~~~~~TpLh~Aa~~g~~e----ivk~Ll~~~~  321 (446)
T PHA02946        284 DVLEIINDKGKQYDSTDFKMAVEVGSIR----CVKYLLDNDI  321 (446)
T ss_pred             HHHHHHHHcCcccCCCHHHHHHHcCCHH----HHHHHHHCCC
Confidence                  122 235779999998876644    5555555543

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=3.8e-34  Score=298.92  Aligned_cols=265  Identities=24%  Similarity=0.305  Sum_probs=232.4

Q ss_pred             chhhhhccCCCCCCHHHHHHHcCCHHHHHHHHhccCccccccCCCCCChHHHH-----HHHcCcHHHHHHHHhcCCCCcc
Q 011183           18 RSSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHI-----AAVQGHHAIVQVLLDHDPSLSQ   92 (491)
Q Consensus        18 ~~~~l~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~-----A~~~g~~~iv~~Ll~~~~~l~~   92 (491)
                      .+...+..+..+.||||.|+..|+.++|+.|++.|.+  ++..+..|.||||+     |+..|+.+++++|+++|+++ +
T Consensus        24 ~~~~~~~~~~~~~t~L~~A~~~~~~~ivk~Ll~~g~~--~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i-~  100 (480)
T PHA03100         24 EDDLNDYSYKKPVLPLYLAKEARNIDVVKILLDNGAD--INSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANV-N  100 (480)
T ss_pred             cCccchhhhcccchhhhhhhccCCHHHHHHHHHcCCC--CCCccccCcCHHHHHHHHHHHhhchHHHHHHHHHCCCCC-C
Confidence            4566777788899999999999999999999998876  56678889999999     99999999999999999998 7


Q ss_pred             cCCCCCCCHHHHHH--HcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcC--CHHHHHHHHhCCcccccccCCCCCC
Q 011183           93 TTGPSNATPLVSAA--TRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQG--HVDVVKALLSKDPQLARRTDKKGQT  168 (491)
Q Consensus        93 ~~~~~g~tpL~~A~--~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g--~~~iv~~Ll~~~~~~~~~~d~~g~t  168 (491)
                      ..|..|.||||+|+  ..|+.+++++|++. +.+++..+..|.||||+|+..|  +.++++.|+++|+++ +..|..|.|
T Consensus       101 ~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~di-n~~d~~g~t  178 (480)
T PHA03100        101 APDNNGITPLLYAISKKSNSYSIVEYLLDN-GANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDI-NAKNRYGYT  178 (480)
T ss_pred             CCCCCCCchhhHHHhcccChHHHHHHHHHc-CCCCCccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCc-ccccCCCCC
Confidence            88899999999999  99999999999987 5667888999999999999999  999999999999987 667889999


Q ss_pred             HHHHHHhCCCHHHHHHHHhcCcccccCCCCCC------ChHHHHHHHcCc--HHHHHHHhcCCCCCcccccCCCCCHHHH
Q 011183          169 ALHMAVKGQSCEVVKLLLEADAAIVMLPDKFG------NTALHVATRKKR--TEIVTELLSLPDTNVNALTRDHKTALDI  240 (491)
Q Consensus       169 ~Lh~Aa~~~~~~iv~~Ll~~~~~~~~~~d~~G------~TpLh~A~~~~~--~~iv~~Ll~~~g~~~~~~d~~G~t~L~~  240 (491)
                      |||+|+..|+.+++++|+++|++ ++..+..|      .||||.|+..++  .+++++|++ .|++++.+|..|.||||+
T Consensus       179 pL~~A~~~~~~~iv~~Ll~~ga~-~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~-~g~din~~d~~g~TpL~~  256 (480)
T PHA03100        179 PLHIAVEKGNIDVIKFLLDNGAD-INAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLS-YGVPINIKDVYGFTPLHY  256 (480)
T ss_pred             HHHHHHHhCCHHHHHHHHHcCCC-ccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHH-cCCCCCCCCCCCCCHHHH
Confidence            99999999999999999999998 67778888      899999999999  999999999 799999999999999999


Q ss_pred             HhhCCCchhhHHHHHHHHHcCccccccCCCchHHHHHHHHHhhhhhhhhhHHh
Q 011183          241 AEGLPSSEEASEIKDCLARCGAVRANELNQPRDELRKTVTQIKKDVHTQLEQT  293 (491)
Q Consensus       241 A~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~  293 (491)
                      |+..++.    ++++.|++.|+..+.....+.+++..+......++.+.+.+.
T Consensus       257 A~~~~~~----~iv~~Ll~~gad~n~~d~~g~tpl~~A~~~~~~~iv~~Ll~~  305 (480)
T PHA03100        257 AVYNNNP----EFVKYLLDLGANPNLVNKYGDTPLHIAILNNNKEIFKLLLNN  305 (480)
T ss_pred             HHHcCCH----HHHHHHHHcCCCCCccCCCCCcHHHHHHHhCCHHHHHHHHhc
Confidence            9987664    488889999997777777777888877776666666555443

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2.2e-33  Score=288.96  Aligned_cols=245  Identities=20%  Similarity=0.276  Sum_probs=211.7

Q ss_pred             hhhHHHHHhhchhhhhccCCCCCCHHHHHHHcCCHHHHHHHHhccCcc---------------------ccccCCCCCCh
Q 011183            8 AEFDTEVAEIRSSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKE---------------------GLTRKNRSGFD   66 (491)
Q Consensus         8 ~~~~~~~~~~~~~~l~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~---------------------~l~~~~~~g~T   66 (491)
                      .+.+..++ ..+.++|..+..|.||||.|+..|+.+++++|++.|.+.                     +++..+..|.|
T Consensus        48 ~~iv~~Ll-~~Ga~~n~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll~~g~d~n~~~~~g~T  126 (434)
T PHA02874         48 AKIVELFI-KHGADINHINTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELKT  126 (434)
T ss_pred             HHHHHHHH-HCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcchhccCCHHHHHHHHHCcCCCCCCCCCCcc
Confidence            34444444 578899999999999999999999999999999987542                     24567889999


Q ss_pred             HHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHH
Q 011183           67 PLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVD  146 (491)
Q Consensus        67 pLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~  146 (491)
                      |||+|+..|+.+++++|+++|+++ +..|..|.||||+|+..|+.+++++|++. +.+.+..+..|.||||+|+..|+.+
T Consensus       127 ~Lh~A~~~~~~~~v~~Ll~~gad~-n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~-g~~~n~~~~~g~tpL~~A~~~g~~~  204 (434)
T PHA02874        127 FLHYAIKKGDLESIKMLFEYGADV-NIEDDNGCYPIHIAIKHNFFDIIKLLLEK-GAYANVKDNNGESPLHNAAEYGDYA  204 (434)
T ss_pred             HHHHHHHCCCHHHHHHHHhCCCCC-CCcCCCCCCHHHHHHHCCcHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHcCCHH
Confidence            999999999999999999999997 67889999999999999999999999988 5667888999999999999999999


Q ss_pred             HHHHHHhCCcccccccCCCCCCHHHHHHhCCCHHHHHHHHhcCcccccCCCCCCChHHHHHHHcC-cHHHHHHHhcCCCC
Q 011183          147 VVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKK-RTEIVTELLSLPDT  225 (491)
Q Consensus       147 iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~~-~~~iv~~Ll~~~g~  225 (491)
                      ++++|++.++++ +..+..|.||||.|+..+. +.+++|+ .+++ ++.+|..|+||||+|+..+ +.+++++|++ .|+
T Consensus       205 iv~~Ll~~g~~i-~~~~~~g~TpL~~A~~~~~-~~i~~Ll-~~~~-in~~d~~G~TpLh~A~~~~~~~~iv~~Ll~-~ga  279 (434)
T PHA02874        205 CIKLLIDHGNHI-MNKCKNGFTPLHNAIIHNR-SAIELLI-NNAS-INDQDIDGSTPLHHAINPPCDIDIIDILLY-HKA  279 (434)
T ss_pred             HHHHHHhCCCCC-cCCCCCCCCHHHHHHHCCh-HHHHHHH-cCCC-CCCcCCCCCCHHHHHHhcCCcHHHHHHHHH-CcC
Confidence            999999999987 6778899999999999765 5666666 4676 7889999999999999875 7899999999 899


Q ss_pred             CcccccCCCCCHHHHHhhCCCchhhHHHHHHHHHcCcc
Q 011183          226 NVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAV  263 (491)
Q Consensus       226 ~~~~~d~~G~t~L~~A~~~~~~~~~~~i~~~L~~~ga~  263 (491)
                      +++.+|..|+||||+|....+..   .+.+.+...+..
T Consensus       280 d~n~~d~~g~TpL~~A~~~~~~~---~~ik~ll~~~~~  314 (434)
T PHA02874        280 DISIKDNKGENPIDTAFKYINKD---PVIKDIIANAVL  314 (434)
T ss_pred             CCCCCCCCCCCHHHHHHHhCCcc---HHHHHHHHhcCc
Confidence            99999999999999998865322   244555665554

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=5.3e-34  Score=291.96  Aligned_cols=227  Identities=22%  Similarity=0.272  Sum_probs=190.3

Q ss_pred             CCCHHHHHHHcCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHc
Q 011183           29 GETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATR  108 (491)
Q Consensus        29 g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~~  108 (491)
                      .+++||.|+..|+.+++++|++.|.+  .+..+..|.||||+|+..|+.+++++|+++|++. +..+..+.||||.|+..
T Consensus         2 ~~~~L~~A~~~g~~~iv~~Ll~~g~~--~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~~~t~L~~A~~~   78 (413)
T PHA02875          2 DQVALCDAILFGELDIARRLLDIGIN--PNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIP-DVKYPDIESELHDAVEE   78 (413)
T ss_pred             CchHHHHHHHhCCHHHHHHHHHCCCC--CCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCc-cccCCCcccHHHHHHHC
Confidence            46889999999999999999988766  4566777889999999999999999999988875 55667788999999999


Q ss_pred             CCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCCHHHHHHhCCCHHHHHHHHhc
Q 011183          109 GHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEA  188 (491)
Q Consensus       109 g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~~~~iv~~Ll~~  188 (491)
                      |+.++++.|++.+....+..+.+|.||||+|+..|+.+++++|+++|+++ +..+..|.||||+|+..|+.+++++|+++
T Consensus        79 g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~-~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~  157 (413)
T PHA02875         79 GDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADP-DIPNTDKFSPLHLAVMMGDIKGIELLIDH  157 (413)
T ss_pred             CCHHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence            99999999998866555566777889999999999999999999988887 67788889999999999999999999998


Q ss_pred             CcccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCC-CHHHHHhhCCCchhhHHHHHHHHHcCcccc
Q 011183          189 DAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHK-TALDIAEGLPSSEEASEIKDCLARCGAVRA  265 (491)
Q Consensus       189 ~~~~~~~~d~~G~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~d~~G~-t~L~~A~~~~~~~~~~~i~~~L~~~ga~~~  265 (491)
                      |++ ++.+|..|+||||+|+..|+.+++++|++ .|++++..+..|. ||+|+|+..+..    ++++.|++.|+..+
T Consensus       158 g~~-~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~-~ga~~n~~~~~~~~t~l~~A~~~~~~----~iv~~Ll~~gad~n  229 (413)
T PHA02875        158 KAC-LDIEDCCGCTPLIIAMAKGDIAICKMLLD-SGANIDYFGKNGCVAALCYAIENNKI----DIVRLFIKRGADCN  229 (413)
T ss_pred             CCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHh-CCCCCCcCCCCCCchHHHHHHHcCCH----HHHHHHHHCCcCcc
Confidence            887 77888889999999999999999999888 7889888888775 788888877654    47888888888754

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=4.4e-34  Score=298.43  Aligned_cols=245  Identities=25%  Similarity=0.302  Sum_probs=223.8

Q ss_pred             hhhHHHHHhhchhhhhccCCCCCCHHHH-----HHHcCCHHHHHHHHhccCccccccCCCCCChHHHHHH--HcCcHHHH
Q 011183            8 AEFDTEVAEIRSSVVNEVNELGETALFT-----AADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAA--VQGHHAIV   80 (491)
Q Consensus         8 ~~~~~~~~~~~~~~l~~~~~~g~T~Lh~-----Aa~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~--~~g~~~iv   80 (491)
                      .+.+..++ ..+.+++..+..|.||||+     |+..|+.++++.|++.|++  ++..+..|.||||+|+  ..|+.+++
T Consensus        48 ~~ivk~Ll-~~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~--i~~~d~~g~tpL~~A~~~~~~~~~iv  124 (480)
T PHA03100         48 IDVVKILL-DNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGAN--VNAPDNNGITPLLYAISKKSNSYSIV  124 (480)
T ss_pred             HHHHHHHH-HcCCCCCCccccCcCHHHHHHHHHHHhhchHHHHHHHHHCCCC--CCCCCCCCCchhhHHHhcccChHHHH
Confidence            44555555 4688999999999999999     9999999999999999877  4778999999999999  99999999


Q ss_pred             HHHHhcCCCCcccCCCCCCCHHHHHHHcC--CHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhCCccc
Q 011183           81 QVLLDHDPSLSQTTGPSNATPLVSAATRG--HTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQL  158 (491)
Q Consensus        81 ~~Ll~~~~~l~~~~~~~g~tpL~~A~~~g--~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~  158 (491)
                      ++|+++|+++ +..+..|.||||+|+..|  +.+++++|++. +.+++..|..|.||||+|+..|+.+++++|+++|+++
T Consensus       125 ~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~-g~din~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~  202 (480)
T PHA03100        125 EYLLDNGANV-NIKNSDGENLLHLYLESNKIDLKILKLLIDK-GVDINAKNRYGYTPLHIAVEKGNIDVIKFLLDNGADI  202 (480)
T ss_pred             HHHHHcCCCC-CccCCCCCcHHHHHHHcCCChHHHHHHHHHC-CCCcccccCCCCCHHHHHHHhCCHHHHHHHHHcCCCc
Confidence            9999999997 678899999999999999  99999999998 5667888999999999999999999999999999987


Q ss_pred             ccccCCCC------CCHHHHHHhCCC--HHHHHHHHhcCcccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCcccc
Q 011183          159 ARRTDKKG------QTALHMAVKGQS--CEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNAL  230 (491)
Q Consensus       159 ~~~~d~~g------~t~Lh~Aa~~~~--~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~  230 (491)
                       +..+..|      .||||.|+..++  .+++++|++.|++ ++.+|..|.||||+|+..++.+++++|++ .|+|++.+
T Consensus       203 -~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~d-in~~d~~g~TpL~~A~~~~~~~iv~~Ll~-~gad~n~~  279 (480)
T PHA03100        203 -NAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVP-INIKDVYGFTPLHYAVYNNNPEFVKYLLD-LGANPNLV  279 (480)
T ss_pred             -cCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCcc
Confidence             6667778      899999999999  9999999999998 78899999999999999999999999999 89999999


Q ss_pred             cCCCCCHHHHHhhCCCchhhHHHHHHHHHcCccc
Q 011183          231 TRDHKTALDIAEGLPSSEEASEIKDCLARCGAVR  264 (491)
Q Consensus       231 d~~G~t~L~~A~~~~~~~~~~~i~~~L~~~ga~~  264 (491)
                      |..|.||+++|...+..    ++++.|++.|+..
T Consensus       280 d~~g~tpl~~A~~~~~~----~iv~~Ll~~g~~i  309 (480)
T PHA03100        280 NKYGDTPLHIAILNNNK----EIFKLLLNNGPSI  309 (480)
T ss_pred             CCCCCcHHHHHHHhCCH----HHHHHHHhcCCCH
Confidence            99999999999987654    4888888888754

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=1.8e-32  Score=277.66  Aligned_cols=240  Identities=26%  Similarity=0.319  Sum_probs=198.8

Q ss_pred             hhchhhhhccCCCCCCHHHHHHHcCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHh-----cCCCC
Q 011183           16 EIRSSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLD-----HDPSL   90 (491)
Q Consensus        16 ~~~~~~l~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~-----~~~~l   90 (491)
                      -..+.++|..|+.|.||||+||..++.|..+.|++.+++  ....|.+|++|+|.|+++|..++.+..+.     ++..+
T Consensus       141 l~~~~dvnl~de~~~TpLh~A~~~~~~E~~k~Li~~~a~--~~K~~~~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~i  218 (929)
T KOG0510|consen  141 LDYGADVNLEDENGFTPLHLAARKNKVEAKKELINKGAD--PCKSDIDGNFPIHEAARSGSKECMEIFLPEHGYERQTHI  218 (929)
T ss_pred             HHhcCCccccccCCCchhhHHHhcChHHHHHHHHhcCCC--CCcccCcCCchHHHHHHhcchhhhhhhhccccchhhccc
Confidence            334588899999999999999999999987888888776  46678888888888888888888888887     34444


Q ss_pred             cccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCc--------------ccccCCCCCcHHHHHHHcCCHHHHHHHHhCCc
Q 011183           91 SQTTGPSNATPLVSAATRGHTAVVNELLSKDGGL--------------LEISRSNGKNALHFAARQGHVDVVKALLSKDP  156 (491)
Q Consensus        91 ~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~--------------~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~  156 (491)
                       +..++.+.||||.|+..|+.++++.+|+.+...              ++..|.+|.||||+|++.|+.+.++.|+..|.
T Consensus       219 -n~~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga  297 (929)
T KOG0510|consen  219 -NFDNNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGA  297 (929)
T ss_pred             -ccccCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCC
Confidence             566778889999999999999999988875432              33457889999999999999999999999999


Q ss_pred             ccccccCCCCCCHHHHHHhCCCHHHHHHHHh-cCcccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCcc---cccC
Q 011183          157 QLARRTDKKGQTALHMAVKGQSCEVVKLLLE-ADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVN---ALTR  232 (491)
Q Consensus       157 ~~~~~~d~~g~t~Lh~Aa~~~~~~iv~~Ll~-~~~~~~~~~d~~G~TpLh~A~~~~~~~iv~~Ll~~~g~~~~---~~d~  232 (491)
                      ++ +.++.++.||||.||..|+.+.++.|++ .+..+.|..|-.|+||||+|++.|+.++++.|++ .|++..   ..|.
T Consensus       298 ~I-~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~-~GA~~~~~~e~D~  375 (929)
T KOG0510|consen  298 SI-NSKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLN-KGALFLNMSEADS  375 (929)
T ss_pred             cc-cccCCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhhhhcCHHHHHHHHHh-cChhhhccccccc
Confidence            87 7778899999999999999999999988 6666788888899999999999999999999998 677766   4588


Q ss_pred             CCCCHHHHHhhCCCchhhHHHHHHHHHcCccc
Q 011183          233 DHKTALDIAEGLPSSEEASEIKDCLARCGAVR  264 (491)
Q Consensus       233 ~G~t~L~~A~~~~~~~~~~~i~~~L~~~ga~~  264 (491)
                      +|+||||.|+..++..    .++.|+..|+..
T Consensus       376 dg~TaLH~Aa~~g~~~----av~~Li~~Ga~I  403 (929)
T KOG0510|consen  376 DGNTALHLAAKYGNTS----AVQKLISHGADI  403 (929)
T ss_pred             CCchhhhHHHHhccHH----HHHHHHHcCCce
Confidence            9999999999887655    677788888876

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=1.9e-33  Score=296.68  Aligned_cols=272  Identities=17%  Similarity=0.182  Sum_probs=218.3

Q ss_pred             ChhhhHHHHHhhchhhhhcc-CCCCCCHHHHHHHc--CCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCc--HHHH
Q 011183            6 SGAEFDTEVAEIRSSVVNEV-NELGETALFTAADK--GHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGH--HAIV   80 (491)
Q Consensus         6 ~~~~~~~~~~~~~~~~l~~~-~~~g~T~Lh~Aa~~--g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~--~~iv   80 (491)
                      ...+++..+++..+.++|.. |..|.||||.|+..  ++.+++++|++.|++  ++.+|..|.||||+|+..|+  .+++
T Consensus       153 v~leiVk~LLe~G~ADIN~~~d~~G~TpLH~A~~n~~~~~eIVklLLe~GAD--VN~kD~~G~TPLH~Aa~~g~~~~eIV  230 (764)
T PHA02716        153 IDLDLIKYMVDVGIVNLNYVCKKTGYGILHAYLGNMYVDIDILEWLCNNGVN--VNLQNNHLITPLHTYLITGNVCASVI  230 (764)
T ss_pred             CCHHHHHHHHHCCCCCcccccCCCCCcHHHHHHHhccCCHHHHHHHHHcCCC--CCCCCCCCCCHHHHHHHcCCCCHHHH
Confidence            34456666665443889988 88999999988654  678999999998876  67789999999999999995  4899


Q ss_pred             HHHHhcCCCCcccCCCCCCCHHHHH-------------------------------------HHcCCHHHHHHHHhcCCC
Q 011183           81 QVLLDHDPSLSQTTGPSNATPLVSA-------------------------------------ATRGHTAVVNELLSKDGG  123 (491)
Q Consensus        81 ~~Ll~~~~~l~~~~~~~g~tpL~~A-------------------------------------~~~g~~~~v~~LL~~~~~  123 (491)
                      ++|+++|+++ +.+|..|.||||+|                                     +..|+.++++.|++. ++
T Consensus       231 klLLe~GADV-N~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~-GA  308 (764)
T PHA02716        231 KKIIELGGDM-DMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQP-GV  308 (764)
T ss_pred             HHHHHcCCCC-CCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhC-CC
Confidence            9999999997 67888999999975                                     345778888888877 56


Q ss_pred             cccccCCCCCcHHHHHHH--cCCHHHHHHHHhCCcccccccCCCCCCHHHHHHh--------------CCCHHHHHHHHh
Q 011183          124 LLEISRSNGKNALHFAAR--QGHVDVVKALLSKDPQLARRTDKKGQTALHMAVK--------------GQSCEVVKLLLE  187 (491)
Q Consensus       124 ~~~~~d~~g~tpLh~A~~--~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~--------------~~~~~iv~~Ll~  187 (491)
                      +++..|.+|+||||+|+.  .++.+++++|+++|.++ +.+|..|+||||+|+.              .++.+++++|++
T Consensus       309 dIN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADI-N~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~  387 (764)
T PHA02716        309 KLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDL-NEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLIS  387 (764)
T ss_pred             ceeccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCC-ccCCCCCCCHHHHHHHhhhhhccccccccccChHHHHHHHHH
Confidence            788889999999998764  46789999999999987 7789999999999875              367899999999


Q ss_pred             cCcccccCCCCCCChHHHH----HHHcCcHHHHHHHhcCC----------------------------------------
Q 011183          188 ADAAIVMLPDKFGNTALHV----ATRKKRTEIVTELLSLP----------------------------------------  223 (491)
Q Consensus       188 ~~~~~~~~~d~~G~TpLh~----A~~~~~~~iv~~Ll~~~----------------------------------------  223 (491)
                      +|++ ++.+|..|.||||.    |...++.+++++|+...                                        
T Consensus       388 ~GAD-In~kn~~G~TPLh~y~~~a~n~~~~dIvklLis~~~~~~~~~~~~q~ll~~~d~~~~~lhh~~a~~~~~~~~~~~  466 (764)
T PHA02716        388 LGAD-ITAVNCLGYTPLTSYICTAQNYMYYDIIDCLISDKVLNMVKHRILQDLLIRVDDTPCIIHHIIAKYNIPTDLYTD  466 (764)
T ss_pred             CCCC-CCCcCCCCCChHHHHHHHHHhcChHHHHHHHHhCcchhhhhhhhhhhhhhccCcchhhHHHHHHhcCcchhhhhh
Confidence            9998 78899999999994    22346678888776621                                        


Q ss_pred             --------------------CCCcccccCCCCCHHHHHhhCCCchhh-HHHHHHHHHcCccccccCCCchHHHHHHHHHh
Q 011183          224 --------------------DTNVNALTRDHKTALDIAEGLPSSEEA-SEIKDCLARCGAVRANELNQPRDELRKTVTQI  282 (491)
Q Consensus       224 --------------------g~~~~~~d~~G~t~L~~A~~~~~~~~~-~~i~~~L~~~ga~~~~~~~~~~~~l~~~~~~~  282 (491)
                                          +.+++..|..|+||||+|+..++.... .++++.|++.|+..+...+.+.+++..+....
T Consensus       467 ~~~~~~~~~~~~v~~~~ii~~~nvN~~D~~G~TPLh~Aa~~g~~~~v~~e~~k~LL~~GADIN~~d~~G~TPLh~A~~~g  546 (764)
T PHA02716        467 EYEPYDSTKIHDVYHCAIIERYNNAVCETSGMTPLHVSIISHTNANIVMDSFVYLLSIQYNINIPTKNGVTPLMLTMRNN  546 (764)
T ss_pred             hhhhccccccchhhHHHHHhhccccccCCCCCCHHHHHHHcCCccchhHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcC
Confidence                                113355678899999999987665432 56778999999998888888888888877655


Q ss_pred             h
Q 011183          283 K  283 (491)
Q Consensus       283 ~  283 (491)
                      +
T Consensus       547 ~  547 (764)
T PHA02716        547 R  547 (764)
T ss_pred             C
Confidence            3

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.7e-33  Score=293.39  Aligned_cols=240  Identities=20%  Similarity=0.266  Sum_probs=214.1

Q ss_pred             HHHhhchhhhhccCCCCCCHHHHHHHcC-CHHHHHHHHhccCccccccCCCCCChHHHHHH--HcCcHHHHHHHHhcCCC
Q 011183           13 EVAEIRSSVVNEVNELGETALFTAADKG-HIEVVNELLKYSTKEGLTRKNRSGFDPLHIAA--VQGHHAIVQVLLDHDPS   89 (491)
Q Consensus        13 ~~~~~~~~~l~~~~~~g~T~Lh~Aa~~g-~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~--~~g~~~iv~~Ll~~~~~   89 (491)
                      +.+-..++++|.+|..|.||||+|+..| +.++++.|++.|++  ++..|..|.||||+|+  ..++.+++++|+++|++
T Consensus        67 ~~Ll~~Gadin~~~~~g~TpLh~A~~~~~~~~iv~lLl~~ga~--in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad  144 (471)
T PHA03095         67 RLLLEAGADVNAPERCGFTPLHLYLYNATTLDVIKLLIKAGAD--VNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGAD  144 (471)
T ss_pred             HHHHHCCCCCCCCCCCCCCHHHHHHHcCCcHHHHHHHHHcCCC--CCCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCC
Confidence            3344578999999999999999999999 59999999999876  6788999999999999  56789999999999999


Q ss_pred             CcccCCCCCCCHHHHHHHcC--CHHHHHHHHhcCCCcccccCCCCCcHHHHHHHc--CCHHHHHHHHhCCcccccccCCC
Q 011183           90 LSQTTGPSNATPLVSAATRG--HTAVVNELLSKDGGLLEISRSNGKNALHFAARQ--GHVDVVKALLSKDPQLARRTDKK  165 (491)
Q Consensus        90 l~~~~~~~g~tpL~~A~~~g--~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~--g~~~iv~~Ll~~~~~~~~~~d~~  165 (491)
                      + +..|..|.||||+|+..+  +.++++.|++.+ .+.+..|..|.||||.++..  ++.++++.|++.|.++ +.+|..
T Consensus       145 ~-~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g-~~~~~~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~~-~~~d~~  221 (471)
T PHA03095        145 V-NALDLYGMTPLAVLLKSRNANVELLRLLIDAG-ADVYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDP-AATDML  221 (471)
T ss_pred             C-CccCCCCCCHHHHHHHcCCCCHHHHHHHHHcC-CCCcccCCCCCCHHHHHHHHCCCcHHHHHHHHHcCCCC-cccCCC
Confidence            7 678899999999999876  689999999985 45555699999999999875  7899999999999997 788999


Q ss_pred             CCCHHHHHHhCCCH--HHHHHHHhcCcccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhh
Q 011183          166 GQTALHMAVKGQSC--EVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEG  243 (491)
Q Consensus       166 g~t~Lh~Aa~~~~~--~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~d~~G~t~L~~A~~  243 (491)
                      |+||||+|+..++.  .+++.|++.|++ ++.+|..|+||||+|+..|+.+++++|++ .|+|++.+|..|+||+|+|+.
T Consensus       222 g~tpLh~Aa~~~~~~~~~v~~ll~~g~d-in~~d~~g~TpLh~A~~~~~~~~v~~LL~-~gad~n~~~~~g~tpl~~A~~  299 (471)
T PHA03095        222 GNTPLHSMATGSSCKRSLVLPLLIAGIS-INARNRYGQTPLHYAAVFNNPRACRRLIA-LGADINAVSSDGNTPLSLMVR  299 (471)
T ss_pred             CCCHHHHHHhcCCchHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCcccCCCCCCHHHHHHH
Confidence            99999999999875  688899999998 88999999999999999999999999999 799999999999999999998


Q ss_pred             CCCchhhHHHHHHHHHcCcc
Q 011183          244 LPSSEEASEIKDCLARCGAV  263 (491)
Q Consensus       244 ~~~~~~~~~i~~~L~~~ga~  263 (491)
                      .++.+    +++.|++.++.
T Consensus       300 ~~~~~----~v~~LL~~~~~  315 (471)
T PHA03095        300 NNNGR----AVRAALAKNPS  315 (471)
T ss_pred             hCCHH----HHHHHHHhCCC
Confidence            87655    66777776654

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=2e-33  Score=296.55  Aligned_cols=250  Identities=18%  Similarity=0.133  Sum_probs=208.8

Q ss_pred             hhHHHHHhhchhhhhccCCCCCCHHHHHHHcCC--HHHHHHHHhccCccccccCCCCCChHHHHH---------------
Q 011183            9 EFDTEVAEIRSSVVNEVNELGETALFTAADKGH--IEVVNELLKYSTKEGLTRKNRSGFDPLHIA---------------   71 (491)
Q Consensus         9 ~~~~~~~~~~~~~l~~~~~~g~T~Lh~Aa~~g~--~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A---------------   71 (491)
                      +.+.. +-..++++|.+|..|.||||+|++.|+  .++|+.|++.|++  ++.+|..|.||||.|               
T Consensus       193 eIVkl-LLe~GADVN~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~GAD--VN~kD~~G~TPLh~Ai~~a~n~~~EIvkiL  269 (764)
T PHA02716        193 DILEW-LCNNGVNVNLQNNHLITPLHTYLITGNVCASVIKKIIELGGD--MDMKCVNGMSPIMTYIINIDNINPEITNIY  269 (764)
T ss_pred             HHHHH-HHHcCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCC--CCCCCCCCCCHHHHHHHhhhccCHHHHHHH
Confidence            34433 334789999999999999999999995  5999999999987  677899999999975               


Q ss_pred             ----------------------HHcCcHHHHHHHHhcCCCCcccCCCCCCCHHHHHHH--cCCHHHHHHHHhcCCCcccc
Q 011183           72 ----------------------AVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAAT--RGHTAVVNELLSKDGGLLEI  127 (491)
Q Consensus        72 ----------------------~~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~--~g~~~~v~~LL~~~~~~~~~  127 (491)
                                            +..|+.+++++|+++|+++ +..|..|+||||+|+.  .++.+++++|++. +++++.
T Consensus       270 ie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdI-N~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~-GADIN~  347 (764)
T PHA02716        270 IESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVKL-HYKDSAGRTCLHQYILRHNISTDIIKLLHEY-GNDLNE  347 (764)
T ss_pred             HHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCce-eccCCCCCCHHHHHHHHhCCCchHHHHHHHc-CCCCcc
Confidence                                  4568889999999999997 6789999999999864  4689999999987 678899


Q ss_pred             cCCCCCcHHHHHHH--------------cCCHHHHHHHHhCCcccccccCCCCCCHHHHH----HhCCCHHHHHHHHhcC
Q 011183          128 SRSNGKNALHFAAR--------------QGHVDVVKALLSKDPQLARRTDKKGQTALHMA----VKGQSCEVVKLLLEAD  189 (491)
Q Consensus       128 ~d~~g~tpLh~A~~--------------~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A----a~~~~~~iv~~Ll~~~  189 (491)
                      .|..|+||||+|+.              .++.+++++|+++|+++ +.+|..|+||||.+    ...+..+++++|++.+
T Consensus       348 kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GADI-n~kn~~G~TPLh~y~~~a~n~~~~dIvklLis~~  426 (764)
T PHA02716        348 PDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGADI-TAVNCLGYTPLTSYICTAQNYMYYDIIDCLISDK  426 (764)
T ss_pred             CCCCCCCHHHHHHHhhhhhccccccccccChHHHHHHHHHCCCCC-CCcCCCCCChHHHHHHHHHhcChHHHHHHHHhCc
Confidence            99999999999875              37899999999999997 78899999999942    2356788888888754


Q ss_pred             cc------------------------------------------------------------cccCCCCCCChHHHHHHH
Q 011183          190 AA------------------------------------------------------------IVMLPDKFGNTALHVATR  209 (491)
Q Consensus       190 ~~------------------------------------------------------------~~~~~d~~G~TpLh~A~~  209 (491)
                      ..                                                            ..+..|..|+||||+|+.
T Consensus       427 ~~~~~~~~~~q~ll~~~d~~~~~lhh~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~ii~~~nvN~~D~~G~TPLh~Aa~  506 (764)
T PHA02716        427 VLNMVKHRILQDLLIRVDDTPCIIHHIIAKYNIPTDLYTDEYEPYDSTKIHDVYHCAIIERYNNAVCETSGMTPLHVSII  506 (764)
T ss_pred             chhhhhhhhhhhhhhccCcchhhHHHHHHhcCcchhhhhhhhhhccccccchhhHHHHHhhccccccCCCCCCHHHHHHH
Confidence            21                                                            023457789999999999


Q ss_pred             cCcH-----HHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCch-hhHHHHHHHHHcCcccc
Q 011183          210 KKRT-----EIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSE-EASEIKDCLARCGAVRA  265 (491)
Q Consensus       210 ~~~~-----~iv~~Ll~~~g~~~~~~d~~G~t~L~~A~~~~~~~-~~~~i~~~L~~~ga~~~  265 (491)
                      .|+.     +++++|++ .|+|+|.+|.+|+||||+|...+..+ ...++++.|++.|+...
T Consensus       507 ~g~~~~v~~e~~k~LL~-~GADIN~~d~~G~TPLh~A~~~g~~~~~~~eIvk~LL~~ga~~~  567 (764)
T PHA02716        507 SHTNANIVMDSFVYLLS-IQYNINIPTKNGVTPLMLTMRNNRLSGHQWYIVKNILDKRPNVD  567 (764)
T ss_pred             cCCccchhHHHHHHHHh-CCCCCcccCCCCCCHHHHHHHcCCccccHHHHHHHHHhcCCCcc
Confidence            9876     45599998 79999999999999999999987652 34579999999887643

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=5.6e-33  Score=284.40  Aligned_cols=229  Identities=21%  Similarity=0.208  Sum_probs=206.5

Q ss_pred             hhHHHHHhhchhhhhccCCCCCCHHHHHHHcCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhcCC
Q 011183            9 EFDTEVAEIRSSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDP   88 (491)
Q Consensus         9 ~~~~~~~~~~~~~l~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~   88 (491)
                      +....+++ .+.++|..+.+|.||||+|+..|+.+++++|+++|++  .+..+..+.||||.|+..|+.++++.|++.++
T Consensus        16 ~iv~~Ll~-~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~--~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~   92 (413)
T PHA02875         16 DIARRLLD-IGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAI--PDVKYPDIESELHDAVEEGDVKAVEELLDLGK   92 (413)
T ss_pred             HHHHHHHH-CCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCC--ccccCCCcccHHHHHHHCCCHHHHHHHHHcCC
Confidence            44444544 6889999999999999999999999999999999876  35567789999999999999999999999999


Q ss_pred             CCcccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCC
Q 011183           89 SLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQT  168 (491)
Q Consensus        89 ~l~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t  168 (491)
                      ......+..|.||||+|+..|+.+++++|++. +++++..+.+|.||||+|+..|+.++++.|+++++++ +..|..|+|
T Consensus        93 ~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~-gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~T  170 (413)
T PHA02875         93 FADDVFYKDGMTPLHLATILKKLDIMKLLIAR-GADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACL-DIEDCCGCT  170 (413)
T ss_pred             cccccccCCCCCHHHHHHHhCCHHHHHHHHhC-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCC-CCCCCCCCC
Confidence            88777778899999999999999999999988 6678889999999999999999999999999999987 778999999


Q ss_pred             HHHHHHhCCCHHHHHHHHhcCcccccCCCCCC-ChHHHHHHHcCcHHHHHHHhcCCCCCcccc---cCCCCCHHHHHhhC
Q 011183          169 ALHMAVKGQSCEVVKLLLEADAAIVMLPDKFG-NTALHVATRKKRTEIVTELLSLPDTNVNAL---TRDHKTALDIAEGL  244 (491)
Q Consensus       169 ~Lh~Aa~~~~~~iv~~Ll~~~~~~~~~~d~~G-~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~---d~~G~t~L~~A~~~  244 (491)
                      |||+|+..|+.+++++|++.|++ ++..+..| .||+|+|+..++.+++++|++ .|+|++..   +..|.||++++...
T Consensus       171 pL~~A~~~g~~eiv~~Ll~~ga~-~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~-~gad~n~~~~~~~~~~t~l~~~~~~  248 (413)
T PHA02875        171 PLIIAMAKGDIAICKMLLDSGAN-IDYFGKNGCVAALCYAIENNKIDIVRLFIK-RGADCNIMFMIEGEECTILDMICNM  248 (413)
T ss_pred             HHHHHHHcCCHHHHHHHHhCCCC-CCcCCCCCCchHHHHHHHcCCHHHHHHHHH-CCcCcchHhhcCCCchHHHHHHHhh
Confidence            99999999999999999999999 66677766 589999999999999999999 89999875   67899999987654

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=5.1e-33  Score=289.51  Aligned_cols=248  Identities=23%  Similarity=0.269  Sum_probs=209.8

Q ss_pred             hhhhhccCCCCCCHHHHHHHcCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCC
Q 011183           19 SSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSN   98 (491)
Q Consensus        19 ~~~l~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g   98 (491)
                      +...+..+..+.||||.|++.|+.++|+.|++.|++  ++..|..|.||||+||..|+.++++.|++.+.....   ..+
T Consensus        27 ~~~~~~~~~~~~tPLh~A~~~g~~e~vk~Ll~~gad--vn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~---~~~  101 (477)
T PHA02878         27 ENYSTSASLIPFIPLHQAVEARNLDVVKSLLTRGHN--VNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSV---FYT  101 (477)
T ss_pred             hhhcCcccccCcchHHHHHHcCCHHHHHHHHHCCCC--CCCCCCCCCCHHHHHHHCccHhHHHHHHHHHhcccc---ccc
Confidence            334455666789999999999999999999998876  678899999999999999999999999998655422   467


Q ss_pred             CCHHHHHHHcCCHHHHHHHHhc--------------------------------CCCcccccCCC-CCcHHHHHHHcCCH
Q 011183           99 ATPLVSAATRGHTAVVNELLSK--------------------------------DGGLLEISRSN-GKNALHFAARQGHV  145 (491)
Q Consensus        99 ~tpL~~A~~~g~~~~v~~LL~~--------------------------------~~~~~~~~d~~-g~tpLh~A~~~g~~  145 (491)
                      .+|++.|+..++.++++.|+..                                .+++++..+.+ |.||||+|+..|+.
T Consensus       102 ~~~l~~a~~~~~~ei~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~~~  181 (477)
T PHA02878        102 LVAIKDAFNNRNVEIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGADINMKDRHKGNTALHYATENKDQ  181 (477)
T ss_pred             hhhHHHHHHcCCHHHHHHHHhCcccCcccCcHHHHhhccchhhHHHHHHHHHHHcCCCCCccCCCCCCCHHHHHHhCCCH
Confidence            7899999998887766666543                                13455667777 99999999999999


Q ss_pred             HHHHHHHhCCcccccccCCCCCCHHHHHHhCCCHHHHHHHHhcCcccccCCCCCCChHHHHHHHc-CcHHHHHHHhcCCC
Q 011183          146 DVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRK-KRTEIVTELLSLPD  224 (491)
Q Consensus       146 ~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~-~~~~iv~~Ll~~~g  224 (491)
                      ++++.|+++|+++ +..|..|.||||.|++.++.+++++|++.|++ ++.+|..|+||||+|+.. ++.+++++|++ .|
T Consensus       182 ~iv~~Ll~~gad~-n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~-in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~-~g  258 (477)
T PHA02878        182 RLTELLLSYGANV-NIPDKTNNSPLHHAVKHYNKPIVHILLENGAS-TDARDKCGNTPLHISVGYCKDYDILKLLLE-HG  258 (477)
T ss_pred             HHHHHHHHCCCCC-CCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHhcCCHHHHHHHHH-cC
Confidence            9999999999987 77899999999999999999999999999998 788999999999999975 68999999999 79


Q ss_pred             CCcccccC-CCCCHHHHHhhCCCchhhHHHHHHHHHcCccccccCCCchHHHHHHHH
Q 011183          225 TNVNALTR-DHKTALDIAEGLPSSEEASEIKDCLARCGAVRANELNQPRDELRKTVT  280 (491)
Q Consensus       225 ~~~~~~d~-~G~t~L~~A~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~l~~~~~  280 (491)
                      ++++.++. .|.||||+|..  .    .++++.|++.|+..+.....+.+++..+..
T Consensus       259 advn~~~~~~g~TpLh~A~~--~----~~~v~~Ll~~gadin~~d~~g~TpL~~A~~  309 (477)
T PHA02878        259 VDVNAKSYILGLTALHSSIK--S----ERKLKLLLEYGADINSLNSYKLTPLSSAVK  309 (477)
T ss_pred             CCCCccCCCCCCCHHHHHcc--C----HHHHHHHHHCCCCCCCcCCCCCCHHHHHHH
Confidence            99999886 79999999932  2    357889999999888777777777776654

>PHA02876 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2e-32  Score=297.14  Aligned_cols=273  Identities=22%  Similarity=0.251  Sum_probs=230.5

Q ss_pred             HHHHHhhchhhhhccCCCCCCHHHHHHHcCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCC
Q 011183           11 DTEVAEIRSSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSL   90 (491)
Q Consensus        11 ~~~~~~~~~~~l~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l   90 (491)
                      ..+++...++++|.+|..|.||||+|+..|+.++|++|++.|++  ++..+..|.||||.|+..|+.++++.|++.++++
T Consensus       160 i~k~Ll~~Gadvn~~d~~G~TpLh~Aa~~G~~~iv~~LL~~Gad--~n~~~~~g~t~L~~A~~~~~~~ivk~Ll~~~~~~  237 (682)
T PHA02876        160 IAEMLLEGGADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGAD--VNIIALDDLSVLECAVDSKNIDTIKAIIDNRSNI  237 (682)
T ss_pred             HHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCC--cCccCCCCCCHHHHHHHcCCHHHHHHHHhcCCCC
Confidence            34555668899999999999999999999999999999999877  5667888999999999999999988887765442


Q ss_pred             ----------------------------cccCCCCCCCHHHHHHHcCCH-HHHHHHHhcCCCcccccCCCCCcHHHHHHH
Q 011183           91 ----------------------------SQTTGPSNATPLVSAATRGHT-AVVNELLSKDGGLLEISRSNGKNALHFAAR  141 (491)
Q Consensus        91 ----------------------------~~~~~~~g~tpL~~A~~~g~~-~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~  141 (491)
                                                  .+..|..|.||||+|+..|+. ++++.|++. +.+++..|.+|.||||+|+.
T Consensus       238 ~~~~~~L~~ai~~~~~~~~~~Ll~~g~~vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~-gadin~~d~~g~TpLh~Aa~  316 (682)
T PHA02876        238 NKNDLSLLKAIRNEDLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLER-GADVNAKNIKGETPLYLMAK  316 (682)
T ss_pred             CCCcHHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCHHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHH
Confidence                                        134567899999999999986 577777776 66788899999999999999


Q ss_pred             cC-CHHHHHHHHhCCcccccccCCCCCCHHHHHHhC-CCHHHHHHHHhcCcccccCCCCCCChHHHHHHHcCcHHHHHHH
Q 011183          142 QG-HVDVVKALLSKDPQLARRTDKKGQTALHMAVKG-QSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTEL  219 (491)
Q Consensus       142 ~g-~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~-~~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~~~~~iv~~L  219 (491)
                      .| +.++++.|+..+.++ +..|..|.||||+|+.. ++.++++.|++.|++ ++.+|..|+||||+|+..++.+++++|
T Consensus       317 ~g~~~~~v~~Ll~~gadi-n~~d~~g~TpLh~A~~~~~~~~iv~lLl~~gad-in~~d~~G~TpLh~Aa~~~~~~iv~~L  394 (682)
T PHA02876        317 NGYDTENIRTLIMLGADV-NAADRLYITPLHQASTLDRNKDIVITLLELGAN-VNARDYCDKTPIHYAAVRNNVVIINTL  394 (682)
T ss_pred             hCCCHHHHHHHHHcCCCC-CCcccCCCcHHHHHHHhCCcHHHHHHHHHcCCC-CccCCCCCCCHHHHHHHcCCHHHHHHH
Confidence            99 599999999999987 77899999999999985 578899999999998 788999999999999999999999999


Q ss_pred             hcCCCCCcccccCCCCCHHHHHhhCCCchhhHHHHHHHHHcCccccccCCCchHHHHHHHHHh-hhhhhhhhHH
Q 011183          220 LSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVRANELNQPRDELRKTVTQI-KKDVHTQLEQ  292 (491)
Q Consensus       220 l~~~g~~~~~~d~~G~t~L~~A~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~l~~~~~~~-~~~~~~~l~~  292 (491)
                      ++ .|++++..+..|.||||+|+..+..   ..+++.|++.|+..+.....+.+++..+.... ..++.+.|.+
T Consensus       395 l~-~gad~~~~~~~g~T~Lh~A~~~~~~---~~~vk~Ll~~gadin~~d~~G~TpLh~Aa~~~~~~~iv~lLl~  464 (682)
T PHA02876        395 LD-YGADIEALSQKIGTALHFALCGTNP---YMSVKTLIDRGANVNSKNKDLSTPLHYACKKNCKLDVIEMLLD  464 (682)
T ss_pred             HH-CCCCccccCCCCCchHHHHHHcCCH---HHHHHHHHhCCCCCCcCCCCCChHHHHHHHhCCcHHHHHHHHH
Confidence            98 7999999999999999999865442   34577889999988877778888888877643 3455555544

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=9.4e-33  Score=264.20  Aligned_cols=215  Identities=20%  Similarity=0.141  Sum_probs=189.5

Q ss_pred             cCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHH
Q 011183           39 KGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELL  118 (491)
Q Consensus        39 ~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~~g~~~~v~~LL  118 (491)
                      .++.+++++|+++++    +.+|.+|.||||+|+..|+.+++++|+++|++.. ..  +|.||||+|+..|+.++++.|+
T Consensus         9 ~~~~~~~~~Lis~~a----~~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~n-~~--d~~TpLh~Aa~~g~~eiV~lLL   81 (284)
T PHA02791          9 WKSKQLKSFLSSKDA----FKADVHGHSALYYAIADNNVRLVCTLLNAGALKN-LL--ENEFPLHQAATLEDTKIVKILL   81 (284)
T ss_pred             cCHHHHHHHHHhCCC----CCCCCCCCcHHHHHHHcCCHHHHHHHHHCcCCCc-CC--CCCCHHHHHHHCCCHHHHHHHH
Confidence            467899999999765    3578899999999999999999999999998863 33  4689999999999999999999


Q ss_pred             hcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhCCcccccccCCCCC-CHHHHHHhCCCHHHHHHHHhcCcccccCCC
Q 011183          119 SKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQ-TALHMAVKGQSCEVVKLLLEADAAIVMLPD  197 (491)
Q Consensus       119 ~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~-t~Lh~Aa~~~~~~iv~~Ll~~~~~~~~~~d  197 (491)
                      +. +.+++..|.+|+||||+|+..|+.+++++|+++++++ +..+..|+ ||||+|+..|+.+++++|++.+++..+  .
T Consensus        82 ~~-Gadvn~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadi-n~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~~d--~  157 (284)
T PHA02791         82 FS-GMDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRL-MFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFD--L  157 (284)
T ss_pred             HC-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCc-CccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCcccc--c
Confidence            87 6678889999999999999999999999999999987 56777774 899999999999999999998765321  1


Q ss_pred             CCCChHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCH-HHHHhhCCCchhhHHHHHHHHHcCccccccCC
Q 011183          198 KFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTA-LDIAEGLPSSEEASEIKDCLARCGAVRANELN  269 (491)
Q Consensus       198 ~~G~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~d~~G~t~-L~~A~~~~~~~~~~~i~~~L~~~ga~~~~~~~  269 (491)
                      ..|.||||+|+..|+.+++++|++ .|++++.+|..|.|| ||+|+..++.+    +++.|+++|+..+....
T Consensus       158 ~~g~TpLh~Aa~~g~~eiv~lLL~-~gAd~n~~d~~g~t~~L~~Aa~~~~~e----~v~lLl~~Ga~in~~~~  225 (284)
T PHA02791        158 AILLSCIHITIKNGHVDMMILLLD-YMTSTNTNNSLLFIPDIKLAIDNKDLE----MLQALFKYDINIYSVNL  225 (284)
T ss_pred             ccCccHHHHHHHcCCHHHHHHHHH-CCCCCCcccCCCCChHHHHHHHcCCHH----HHHHHHHCCCCCccCcc
Confidence            358999999999999999999999 799999999999987 99999987654    88999999998765443

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=2.8e-32  Score=279.27  Aligned_cols=229  Identities=22%  Similarity=0.280  Sum_probs=197.2

Q ss_pred             hccCCCC-CCHHHHHHH--cCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCC
Q 011183           23 NEVNELG-ETALFTAAD--KGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNA   99 (491)
Q Consensus        23 ~~~~~~g-~T~Lh~Aa~--~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~   99 (491)
                      +.....| .++||.++.  .++.++|+.|++.|++  ++.+|.+|.||||+|+..|+.+++++|+++|+++ +.+|..|.
T Consensus        30 ~~~~~~g~~~~Lh~~~~~~~~~~~iv~~Ll~~Gad--vn~~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAdi-n~~d~~g~  106 (446)
T PHA02946         30 QAIEPSGNYHILHAYCGIKGLDERFVEELLHRGYS--PNETDDDGNYPLHIASKINNNRIVAMLLTHGADP-NACDKQHK  106 (446)
T ss_pred             hccCCCCCChHHHHHHHhcCCCHHHHHHHHHCcCC--CCccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCC-CCCCCCCC
Confidence            3444444 699998774  4578999999999876  6788999999999999999999999999999998 68899999


Q ss_pred             CHHHHHHHcCC--HHHHHHHHhcCCCccc-ccCCCCCcHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCCHHHHHHhC
Q 011183          100 TPLVSAATRGH--TAVVNELLSKDGGLLE-ISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKG  176 (491)
Q Consensus       100 tpL~~A~~~g~--~~~v~~LL~~~~~~~~-~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~  176 (491)
                      ||||+|+..++  .+++++|++++ ++++ ..|.+|.|||| |+..|+.++++.|++.+.+. +..|..|+||||.|+..
T Consensus       107 TpLh~A~~~~~~~~e~v~lLl~~G-adin~~~d~~g~tpL~-aa~~~~~~vv~~Ll~~gad~-~~~d~~G~t~Lh~A~~~  183 (446)
T PHA02946        107 TPLYYLSGTDDEVIERINLLVQYG-AKINNSVDEEGCGPLL-ACTDPSERVFKKIMSIGFEA-RIVDKFGKNHIHRHLMS  183 (446)
T ss_pred             CHHHHHHHcCCchHHHHHHHHHcC-CCcccccCCCCCcHHH-HHHCCChHHHHHHHhccccc-cccCCCCCCHHHHHHHh
Confidence            99999988664  78999999885 4555 46889999998 66779999999999999887 78899999999999875


Q ss_pred             C--CHHHHHHHHhcCcccccCCCCCCChHHHHHHHcC--cHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCchhhHH
Q 011183          177 Q--SCEVVKLLLEADAAIVMLPDKFGNTALHVATRKK--RTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASE  252 (491)
Q Consensus       177 ~--~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~~--~~~iv~~Ll~~~g~~~~~~d~~G~t~L~~A~~~~~~~~~~~  252 (491)
                      +  +.+++++|++.|++ ++.+|.+|+||||+|+..+  +.+++++|+.  |+++|.+|..|+||||+|+..++.   .+
T Consensus       184 ~~~~~~~v~~Ll~~Gad-in~~d~~G~TpLH~Aa~~~~~~~~iv~lLl~--gadin~~d~~G~TpLh~A~~~~~~---~~  257 (446)
T PHA02946        184 DNPKASTISWMMKLGIS-PSKPDHDGNTPLHIVCSKTVKNVDIINLLLP--STDVNKQNKFGDSPLTLLIKTLSP---AH  257 (446)
T ss_pred             cCCCHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHcCCCcHHHHHHHHc--CCCCCCCCCCCCCHHHHHHHhCCh---HH
Confidence            4  46899999999999 8889999999999999986  7899999885  899999999999999999987553   24


Q ss_pred             HHHHHHHcCcc
Q 011183          253 IKDCLARCGAV  263 (491)
Q Consensus       253 i~~~L~~~ga~  263 (491)
                      +.+.|+..|+.
T Consensus       258 ~~~~Ll~~g~~  268 (446)
T PHA02946        258 LINKLLSTSNV  268 (446)
T ss_pred             HHHHHHhCCCC
Confidence            66777777764

>PHA02876 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2.4e-32  Score=296.46  Aligned_cols=265  Identities=20%  Similarity=0.241  Sum_probs=230.4

Q ss_pred             ChhhhHHHHHhhchhhhhccCCCCCCHHHHHH------------------------------------------------
Q 011183            6 SGAEFDTEVAEIRSSVVNEVNELGETALFTAA------------------------------------------------   37 (491)
Q Consensus         6 ~~~~~~~~~~~~~~~~l~~~~~~g~T~Lh~Aa------------------------------------------------   37 (491)
                      ...|.+.++++.+|..++..|..|.||||+|+                                                
T Consensus        52 g~~e~V~~ll~~~~~~~~~~~~~~~tpLh~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~  131 (682)
T PHA02876         52 RQIDIVEEIIQQNPELIYITDHKCHSTLHTICIIPNVMDIVISLTLDCDIILDIKYASIILNKHKLDEACIHILKEAISG  131 (682)
T ss_pred             HhhhHHHHHHHhCcccchhhchhhccccccccCCCCccccccccccchhhcccccHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            34678899999999888999999999999665                                                


Q ss_pred             ----------------------HcCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCC
Q 011183           38 ----------------------DKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTG   95 (491)
Q Consensus        38 ----------------------~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~   95 (491)
                                            ..|+.+++++|++.|++  ++.+|..|.||||+|+..|+.++|++|+++|+++ +..+
T Consensus       132 ~~~~~~~~~~~~~~~~~l~~~i~~~~~~i~k~Ll~~Gad--vn~~d~~G~TpLh~Aa~~G~~~iv~~LL~~Gad~-n~~~  208 (682)
T PHA02876        132 NDIHYDKINESIEYMKLIKERIQQDELLIAEMLLEGGAD--VNAKDIYCITPIHYAAERGNAKMVNLLLSYGADV-NIIA  208 (682)
T ss_pred             CcccHHhhccchhhhHHHHHHHHCCcHHHHHHHHhCCCC--CCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCc-CccC
Confidence                                  56789999999998876  6788999999999999999999999999999997 6778


Q ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhcCC----------------------------CcccccCCCCCcHHHHHHHcCCH-H
Q 011183           96 PSNATPLVSAATRGHTAVVNELLSKDG----------------------------GLLEISRSNGKNALHFAARQGHV-D  146 (491)
Q Consensus        96 ~~g~tpL~~A~~~g~~~~v~~LL~~~~----------------------------~~~~~~d~~g~tpLh~A~~~g~~-~  146 (491)
                      ..|.||||+|+..|+.++++.|++...                            .+++..|..|.||||+|+..|+. +
T Consensus       209 ~~g~t~L~~A~~~~~~~ivk~Ll~~~~~~~~~~~~L~~ai~~~~~~~~~~Ll~~g~~vn~~d~~g~TpLh~Aa~~~~~~~  288 (682)
T PHA02876        209 LDDLSVLECAVDSKNIDTIKAIIDNRSNINKNDLSLLKAIRNEDLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSR  288 (682)
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCcHHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCHHH
Confidence            899999999999999999988876432                            23556678899999999999986 6


Q ss_pred             HHHHHHhCCcccccccCCCCCCHHHHHHhCC-CHHHHHHHHhcCcccccCCCCCCChHHHHHHHc-CcHHHHHHHhcCCC
Q 011183          147 VVKALLSKDPQLARRTDKKGQTALHMAVKGQ-SCEVVKLLLEADAAIVMLPDKFGNTALHVATRK-KRTEIVTELLSLPD  224 (491)
Q Consensus       147 iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~-~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~-~~~~iv~~Ll~~~g  224 (491)
                      +++.|++.+.++ +..|.+|+||||+|+..| ..++++.|++.|++ ++.+|..|.||||+|+.. ++.++++.|++ .|
T Consensus       289 iv~lLl~~gadi-n~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gad-in~~d~~g~TpLh~A~~~~~~~~iv~lLl~-~g  365 (682)
T PHA02876        289 LVPKLLERGADV-NAKNIKGETPLYLMAKNGYDTENIRTLIMLGAD-VNAADRLYITPLHQASTLDRNKDIVITLLE-LG  365 (682)
T ss_pred             HHHHHHHCCCCC-CCcCCCCCCHHHHHHHhCCCHHHHHHHHHcCCC-CCCcccCCCcHHHHHHHhCCcHHHHHHHHH-cC
Confidence            899999999987 778999999999999998 69999999999999 788999999999999986 46788888887 89


Q ss_pred             CCcccccCCCCCHHHHHhhCCCchhhHHHHHHHHHcCccccccCCCchHHHHHHHH
Q 011183          225 TNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVRANELNQPRDELRKTVT  280 (491)
Q Consensus       225 ~~~~~~d~~G~t~L~~A~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~l~~~~~  280 (491)
                      ++++.+|..|+||||+|+..++.    ++++.|+++|+..........+++..+..
T Consensus       366 adin~~d~~G~TpLh~Aa~~~~~----~iv~~Ll~~gad~~~~~~~g~T~Lh~A~~  417 (682)
T PHA02876        366 ANVNARDYCDKTPIHYAAVRNNV----VIINTLLDYGADIEALSQKIGTALHFALC  417 (682)
T ss_pred             CCCccCCCCCCCHHHHHHHcCCH----HHHHHHHHCCCCccccCCCCCchHHHHHH
Confidence            99999999999999999987664    48889999999887766666677766543

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=6.1e-32  Score=281.41  Aligned_cols=226  Identities=23%  Similarity=0.248  Sum_probs=196.3

Q ss_pred             hhhhHHHHHhhchhhhhccCCCCCCHHHHHHHcCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHH--------
Q 011183            7 GAEFDTEVAEIRSSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHA--------   78 (491)
Q Consensus         7 ~~~~~~~~~~~~~~~l~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~--------   78 (491)
                      ..+.+..+++ .++++|.+|.+|.||||+||..|+.++++.|++.+.....    ..+.+|+|.|+..|+.+        
T Consensus        49 ~~e~vk~Ll~-~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~----~~~~~~l~~a~~~~~~ei~~~Ll~~  123 (477)
T PHA02878         49 NLDVVKSLLT-RGHNVNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSV----FYTLVAIKDAFNNRNVEIFKIILTN  123 (477)
T ss_pred             CHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHHCccHhHHHHHHHHHhcccc----ccchhhHHHHHHcCCHHHHHHHHhC
Confidence            4455666655 6889999999999999999999999999999997654322    45789999999888765        


Q ss_pred             -------------------------HHHHHHhcCCCCcccCCCC-CCCHHHHHHHcCCHHHHHHHHhcCCCcccccCCCC
Q 011183           79 -------------------------IVQVLLDHDPSLSQTTGPS-NATPLVSAATRGHTAVVNELLSKDGGLLEISRSNG  132 (491)
Q Consensus        79 -------------------------iv~~Ll~~~~~l~~~~~~~-g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~d~~g  132 (491)
                                               ++++|+++|+++ +..+.. |.||||+|+..|+.+++++|++. +++++..|..|
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~gadi-n~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~-gad~n~~d~~g  201 (477)
T PHA02878        124 RYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGADI-NMKDRHKGNTALHYATENKDQRLTELLLSY-GANVNIPDKTN  201 (477)
T ss_pred             cccCcccCcHHHHhhccchhhHHHHHHHHHHHcCCCC-CccCCCCCCCHHHHHHhCCCHHHHHHHHHC-CCCCCCcCCCC
Confidence                                     455555666676 455666 99999999999999999999988 56788899999


Q ss_pred             CcHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCCHHHHHHhC-CCHHHHHHHHhcCcccccCCCC-CCChHHHHHHHc
Q 011183          133 KNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKG-QSCEVVKLLLEADAAIVMLPDK-FGNTALHVATRK  210 (491)
Q Consensus       133 ~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~-~~~~iv~~Ll~~~~~~~~~~d~-~G~TpLh~A~~~  210 (491)
                      .||||.|+..|+.++++.|++.|+++ +.+|..|+||||+|+.. ++.+++++|+++|++ ++.++. .|.||||+|  .
T Consensus       202 ~tpLh~A~~~~~~~iv~~Ll~~ga~i-n~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gad-vn~~~~~~g~TpLh~A--~  277 (477)
T PHA02878        202 NSPLHHAVKHYNKPIVHILLENGAST-DARDKCGNTPLHISVGYCKDYDILKLLLEHGVD-VNAKSYILGLTALHSS--I  277 (477)
T ss_pred             CCHHHHHHHhCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCC-CCccCCCCCCCHHHHH--c
Confidence            99999999999999999999999997 78899999999999975 789999999999999 666664 899999999  5


Q ss_pred             CcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhC
Q 011183          211 KRTEIVTELLSLPDTNVNALTRDHKTALDIAEGL  244 (491)
Q Consensus       211 ~~~~iv~~Ll~~~g~~~~~~d~~G~t~L~~A~~~  244 (491)
                      ++.+++++|++ .|+|+|..|..|.||||+|+..
T Consensus       278 ~~~~~v~~Ll~-~gadin~~d~~g~TpL~~A~~~  310 (477)
T PHA02878        278 KSERKLKLLLE-YGADINSLNSYKLTPLSSAVKQ  310 (477)
T ss_pred             cCHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHHH
Confidence            77899999999 8999999999999999999874

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=1.5e-32  Score=278.10  Aligned_cols=232  Identities=27%  Similarity=0.377  Sum_probs=208.4

Q ss_pred             ChhhhHHHHHhhchhhhhccCCCCCCHHHHHHHcCCHHHHHHHHhc---cCccccccCCCCCChHHHHHHHcCcHHHHHH
Q 011183            6 SGAEFDTEVAEIRSSVVNEVNELGETALFTAADKGHIEVVNELLKY---STKEGLTRKNRSGFDPLHIAAVQGHHAIVQV   82 (491)
Q Consensus         6 ~~~~~~~~~~~~~~~~l~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~---~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~   82 (491)
                      +.+| ....+-..++++.+.|.+|++|+|.|++.|..++.+..+..   .....++..|..|.||||.|+..|++++++.
T Consensus       165 ~~~E-~~k~Li~~~a~~~K~~~~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~in~~~n~~~~pLhlAve~g~~e~lk~  243 (929)
T KOG0510|consen  165 NKVE-AKKELINKGADPCKSDIDGNFPIHEAARSGSKECMEIFLPEHGYERQTHINFDNNEKATPLHLAVEGGDIEMLKM  243 (929)
T ss_pred             ChHH-HHHHHHhcCCCCCcccCcCCchHHHHHHhcchhhhhhhhccccchhhcccccccCCCCcchhhhhhcCCHHHHHH
Confidence            4455 44455568899999999999999999999999999999982   2233467889999999999999999999999


Q ss_pred             HHhcCCCC--------------cccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHH
Q 011183           83 LLDHDPSL--------------SQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVV  148 (491)
Q Consensus        83 Ll~~~~~l--------------~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv  148 (491)
                      +|+.+...              .+..|.+|.||||+||+.|+.+++..|+.. |.+++.++.++.||||.|++.|+.+.+
T Consensus       244 ~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~-Ga~I~~kn~d~~spLH~AA~yg~~ntv  322 (929)
T KOG0510|consen  244 CLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGF-GASINSKNKDEESPLHFAAIYGRINTV  322 (929)
T ss_pred             HHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHc-CCcccccCCCCCCchHHHHHcccHHHH
Confidence            99987643              245688999999999999999999999987 778999999999999999999999999


Q ss_pred             HHHHh-CCcccccccCCCCCCHHHHHHhCCCHHHHHHHHhcCccccc--CCCCCCChHHHHHHHcCcHHHHHHHhcCCCC
Q 011183          149 KALLS-KDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVM--LPDKFGNTALHVATRKKRTEIVTELLSLPDT  225 (491)
Q Consensus       149 ~~Ll~-~~~~~~~~~d~~g~t~Lh~Aa~~~~~~iv~~Ll~~~~~~~~--~~d~~G~TpLh~A~~~~~~~iv~~Ll~~~g~  225 (491)
                      +.||+ .+..+.+..|..|.||||+|++.|+..++++|++.|+...+  ..|.+|+||||+|+..|+..+|+.|+. .|+
T Consensus       323 ~rLL~~~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~GA~~~~~~e~D~dg~TaLH~Aa~~g~~~av~~Li~-~Ga  401 (929)
T KOG0510|consen  323 ERLLQESDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNKGALFLNMSEADSDGNTALHLAAKYGNTSAVQKLIS-HGA  401 (929)
T ss_pred             HHHHhCcCccccccccccCCCchhhhhhcCHHHHHHHHHhcChhhhcccccccCCchhhhHHHHhccHHHHHHHHH-cCC
Confidence            99999 66667788899999999999999999999999999998766  569999999999999999999999999 899


Q ss_pred             CcccccCCCCCHHHH
Q 011183          226 NVNALTRDHKTALDI  240 (491)
Q Consensus       226 ~~~~~d~~G~t~L~~  240 (491)
                      ++..+|..|.+++|+
T Consensus       402 ~I~~~n~~g~SA~~~  416 (929)
T KOG0510|consen  402 DIGVKNKKGKSAFDT  416 (929)
T ss_pred             ceeeccccccccccc
Confidence            999999999999996

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=100.00  E-value=6.6e-32  Score=268.94  Aligned_cols=211  Identities=30%  Similarity=0.415  Sum_probs=193.0

Q ss_pred             CCHHHHHHHcCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcC
Q 011183           30 ETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRG  109 (491)
Q Consensus        30 ~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~~g  109 (491)
                      .+-++.|++.|+++.|+.|++.. ...++..|++|.|+||+|+.+++.+++++|+++|++++.....-+.||||+|+++|
T Consensus        45 ~~~~v~A~q~G~l~~v~~lve~~-g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar~G  123 (600)
T KOG0509|consen   45 LDDIVKATQYGELETVKELVESE-GESVNNPDREGVTLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAARNG  123 (600)
T ss_pred             hhhhhhHhhcchHHHHHHHHhhc-CcCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHHcC
Confidence            45678999999999999999973 34478889999999999999999999999999999996666678899999999999


Q ss_pred             CHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCCHHHHHHhCCCHHHHHHHHhcC
Q 011183          110 HTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEAD  189 (491)
Q Consensus       110 ~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~~~~iv~~Ll~~~  189 (491)
                      +..++..|+++ |+++...|.+|.+|||.|++.|+.-++-+|+.++.+. +.+|.+|+||||+|+.+|....++.|++.+
T Consensus       124 ~~~vv~lLlqh-GAdpt~~D~~G~~~lHla~~~~~~~~vayll~~~~d~-d~~D~~grTpLmwAaykg~~~~v~~LL~f~  201 (600)
T KOG0509|consen  124 HISVVDLLLQH-GADPTLKDKQGLTPLHLAAQFGHTALVAYLLSKGADI-DLRDNNGRTPLMWAAYKGFALFVRRLLKFG  201 (600)
T ss_pred             cHHHHHHHHHc-CCCCceecCCCCcHHHHHHHhCchHHHHHHHHhcccC-CCcCCCCCCHHHHHHHhcccHHHHHHHHhc
Confidence            99999999988 7889999999999999999999999999999999776 889999999999999999998899999999


Q ss_pred             cccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhC
Q 011183          190 AAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGL  244 (491)
Q Consensus       190 ~~~~~~~d~~G~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~d~~G~t~L~~A~~~  244 (491)
                      +++.-..|.+|+||||+|+..|+..++. |+.+.|++.+..|.+|+||+++|.+.
T Consensus       202 a~~~~~d~~~g~TpLHwa~~~gN~~~v~-Ll~~g~~~~d~~~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  202 ASLLLTDDNHGNTPLHWAVVGGNLTAVK-LLLEGGADLDKTNTNGKTPFDLAQER  255 (600)
T ss_pred             ccccccccccCCchHHHHHhcCCcceEe-hhhhcCCcccccccCCCCHHHHHHHh
Confidence            9955445599999999999999999999 55558999999999999999999765

>PHA02798 ankyrin-like protein; Provisional

Probab=99.98  E-value=3.6e-31  Score=276.20  Aligned_cols=243  Identities=16%  Similarity=0.184  Sum_probs=183.3

Q ss_pred             hhHHHHHhhchhhhhccCCCCCCHHHHHHHc-----CCHHHHHHHHhccCccccccCCCCCChHHHHHHHcC---cHHHH
Q 011183            9 EFDTEVAEIRSSVVNEVNELGETALFTAADK-----GHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQG---HHAIV   80 (491)
Q Consensus         9 ~~~~~~~~~~~~~l~~~~~~g~T~Lh~Aa~~-----g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g---~~~iv   80 (491)
                      +.+..++ ..|+++|..|..|.||||.|+..     ++.++++.|+++|++  ++.+|..|.||||+|+..+   +.+++
T Consensus        52 ~iv~~Ll-~~Gadvn~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~Gad--iN~~d~~G~TpLh~a~~~~~~~~~~iv  128 (489)
T PHA02798         52 DIVKLFI-NLGANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGAD--INKKNSDGETPLYCLLSNGYINNLEIL  128 (489)
T ss_pred             HHHHHHH-HCCCCCCCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCC--CCCCCCCcCcHHHHHHHcCCcChHHHH
Confidence            3333333 46778888888888888887754     567888888887766  5677778888888888765   67888


Q ss_pred             HHHHhcCCCCcccCCCCCCCHHHHHHHcCC---HHHHHHHHhcCCCccccc-CCCCCcHHHHHHHc----CCHHHHHHHH
Q 011183           81 QVLLDHDPSLSQTTGPSNATPLVSAATRGH---TAVVNELLSKDGGLLEIS-RSNGKNALHFAARQ----GHVDVVKALL  152 (491)
Q Consensus        81 ~~Ll~~~~~l~~~~~~~g~tpL~~A~~~g~---~~~v~~LL~~~~~~~~~~-d~~g~tpLh~A~~~----g~~~iv~~Ll  152 (491)
                      ++|+++|+++ +..|..|.||||+|+..|+   .+++++|++. +.+++.. +..|.||||.++..    ++.+++++|+
T Consensus       129 ~~Ll~~Gadv-n~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~-gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li  206 (489)
T PHA02798        129 LFMIENGADT-TLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEK-GVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFV  206 (489)
T ss_pred             HHHHHcCCCc-cccCCCCCcHHHHHHHcCCcchHHHHHHHHHh-CCCcccccCcCCCcHHHHHHHhccccCCHHHHHHHH
Confidence            8888888886 6777888888888888777   7888888877 4455544 35677888877654    4678888888


Q ss_pred             hCCcccccccCCCCCCHHH-------HHHhCCCHHHHHHHHhcCcccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCC
Q 011183          153 SKDPQLARRTDKKGQTALH-------MAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDT  225 (491)
Q Consensus       153 ~~~~~~~~~~d~~g~t~Lh-------~Aa~~~~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~~~~~iv~~Ll~~~g~  225 (491)
                      ++|.++ +..+..|.++++       .+...++.+++.+|+. +++ +|.+|..|+||||+|+..++.+++++|++ .|+
T Consensus       207 ~~Ga~i-~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~-~~d-vN~~d~~G~TPL~~A~~~~~~~~v~~LL~-~GA  282 (489)
T PHA02798        207 DNGFII-NKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFS-YID-INQVDELGFNPLYYSVSHNNRKIFEYLLQ-LGG  282 (489)
T ss_pred             HCCCCc-ccCCccccchHHHHHHHHHhhcccchHHHHHHHHh-cCC-CCCcCcCCccHHHHHHHcCcHHHHHHHHH-cCC
Confidence            888776 556667777765       2334556677777655 466 78889999999999999999999999999 799


Q ss_pred             CcccccCCCCCHHHHHhhCCCchhhHHHHHHHHHcCccc
Q 011183          226 NVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVR  264 (491)
Q Consensus       226 ~~~~~d~~G~t~L~~A~~~~~~~~~~~i~~~L~~~ga~~  264 (491)
                      |++.+|..|+|||++|...++.    ++.+.+++.++..
T Consensus       283 din~~d~~G~TpL~~A~~~~~~----~iv~~lL~~~~~~  317 (489)
T PHA02798        283 DINIITELGNTCLFTAFENESK----FIFNSILNKKPNK  317 (489)
T ss_pred             cccccCCCCCcHHHHHHHcCcH----HHHHHHHccCCCH
Confidence            9999999999999999887654    3666777766543

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.98  E-value=1.3e-30  Score=272.39  Aligned_cols=267  Identities=20%  Similarity=0.205  Sum_probs=199.9

Q ss_pred             hHHHHHhhchhhhhccCCCCCCHHHHHHHcC--CHHHHHHHHhccCccccccCCCCCChHHHHHHHcC------cHHHHH
Q 011183           10 FDTEVAEIRSSVVNEVNELGETALFTAADKG--HIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQG------HHAIVQ   81 (491)
Q Consensus        10 ~~~~~~~~~~~~l~~~~~~g~T~Lh~Aa~~g--~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g------~~~iv~   81 (491)
                      .+..++ ..|.++|.. .+|.||||.++..+  +.++|+.|+++|++.  +..+ .+.||||.|+.++      +.++++
T Consensus        18 ~v~~LL-~~GadvN~~-~~g~t~l~~~~~~~~~~~~iv~~Ll~~GAdv--n~~~-~~~tpL~~a~~~~~~~~~~~~~iv~   92 (494)
T PHA02989         18 ALEFLL-RTGFDVNEE-YRGNSILLLYLKRKDVKIKIVKLLIDNGADV--NYKG-YIETPLCAVLRNREITSNKIKKIVK   92 (494)
T ss_pred             HHHHHH-HcCCCcccc-cCCCCHHHHHHhcCCCChHHHHHHHHcCCCc--cCCC-CCCCcHHHHHhccCcchhhHHHHHH
Confidence            333343 568899998 67999998766543  689999999999874  4444 5789999988754      578999


Q ss_pred             HHHhcCCCCcccCCCCCCCHHHHHHHc---CCHHHHHHHHhcCCCcc-cccCCCCCcHHHHHHHc--CCHHHHHHHHhCC
Q 011183           82 VLLDHDPSLSQTTGPSNATPLVSAATR---GHTAVVNELLSKDGGLL-EISRSNGKNALHFAARQ--GHVDVVKALLSKD  155 (491)
Q Consensus        82 ~Ll~~~~~l~~~~~~~g~tpL~~A~~~---g~~~~v~~LL~~~~~~~-~~~d~~g~tpLh~A~~~--g~~~iv~~Ll~~~  155 (491)
                      +|+++|+++ +..|..|.||||.|+..   |+.+++++|+++ |+++ +..|..|.||||+|+..  ++.+++++|+++|
T Consensus        93 ~Ll~~Gadi-n~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~-Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~G  170 (494)
T PHA02989         93 LLLKFGADI-NLKTFNGVSPIVCFIYNSNINNCDMLRFLLSK-GINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFG  170 (494)
T ss_pred             HHHHCCCCC-CCCCCCCCcHHHHHHHhcccCcHHHHHHHHHC-CCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHcC
Confidence            999999997 67888999999988755   678999999988 5667 78899999999998764  6899999999999


Q ss_pred             cccccccCCCCCCHHHHHHhCC----CHHHHHHHHhcCcccccCCCCCCChHHHHHHHc------CcHHHHHHHhcCCCC
Q 011183          156 PQLARRTDKKGQTALHMAVKGQ----SCEVVKLLLEADAAIVMLPDKFGNTALHVATRK------KRTEIVTELLSLPDT  225 (491)
Q Consensus       156 ~~~~~~~d~~g~t~Lh~Aa~~~----~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~------~~~~iv~~Ll~~~g~  225 (491)
                      +++....+..|.||||+|++.+    +.+++++|++.|++ ++.+|..|.||||.++..      +..+++++|+.  ++
T Consensus       171 adi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~-vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~--~a  247 (494)
T PHA02989        171 VNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVN-IETNNNGSESVLESFLDNNKILSKKEFKVLNFILK--YI  247 (494)
T ss_pred             CCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCC-ccccCCccccHHHHHHHhchhhcccchHHHHHHHh--CC
Confidence            9985446789999999998754    89999999999988 566666667777665543      23455665554  56


Q ss_pred             CcccccCCCCCHHHHHhhCCCchhhHHHHHHHHHcCccccccCCCchHHHHHHHHHhhhhhhhhh
Q 011183          226 NVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVRANELNQPRDELRKTVTQIKKDVHTQL  290 (491)
Q Consensus       226 ~~~~~d~~G~t~L~~A~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l  290 (491)
                      ++|.+|..|+||||+|+..++.    ++++.|++.|+..+.....+.+++..+......++.+.+
T Consensus       248 dvn~~d~~G~TpL~~Aa~~~~~----~~v~~LL~~Gadin~~d~~G~TpL~~A~~~~~~~iv~~L  308 (494)
T PHA02989        248 KINKKDKKGFNPLLISAKVDNY----EAFNYLLKLGDDIYNVSKDGDTVLTYAIKHGNIDMLNRI  308 (494)
T ss_pred             CCCCCCCCCCCHHHHHHHhcCH----HHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHH
Confidence            7777777777777777665443    366666677776666556666666666555544444433

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.98  E-value=1e-30  Score=273.13  Aligned_cols=240  Identities=17%  Similarity=0.202  Sum_probs=203.3

Q ss_pred             hhHHHHHhhchhhhhccCCCCCCHHHHHHHcC------CHHHHHHHHhccCccccccCCCCCChHHHHHHHc---CcHHH
Q 011183            9 EFDTEVAEIRSSVVNEVNELGETALFTAADKG------HIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQ---GHHAI   79 (491)
Q Consensus         9 ~~~~~~~~~~~~~l~~~~~~g~T~Lh~Aa~~g------~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~---g~~~i   79 (491)
                      +.+..+++ .|+++|..+ .+.||||.|+..+      +.++++.|+++|++  ++.+|..|.||||.|+..   |+.++
T Consensus        51 ~iv~~Ll~-~GAdvn~~~-~~~tpL~~a~~~~~~~~~~~~~iv~~Ll~~Gad--in~~d~~g~tpL~~a~~~~~~~~~ei  126 (494)
T PHA02989         51 KIVKLLID-NGADVNYKG-YIETPLCAVLRNREITSNKIKKIVKLLLKFGAD--INLKTFNGVSPIVCFIYNSNINNCDM  126 (494)
T ss_pred             HHHHHHHH-cCCCccCCC-CCCCcHHHHHhccCcchhhHHHHHHHHHHCCCC--CCCCCCCCCcHHHHHHHhcccCcHHH
Confidence            44544444 789999886 6799999998764      47899999999987  677899999999988765   68999


Q ss_pred             HHHHHhcCCCCcccCCCCCCCHHHHHHHc--CCHHHHHHHHhcCCCcccc-cCCCCCcHHHHHHHcC----CHHHHHHHH
Q 011183           80 VQVLLDHDPSLSQTTGPSNATPLVSAATR--GHTAVVNELLSKDGGLLEI-SRSNGKNALHFAARQG----HVDVVKALL  152 (491)
Q Consensus        80 v~~Ll~~~~~l~~~~~~~g~tpL~~A~~~--g~~~~v~~LL~~~~~~~~~-~d~~g~tpLh~A~~~g----~~~iv~~Ll  152 (491)
                      +++|+++|+++....|..|.||||+|+..  ++.+++++|++++ ++++. .+..|.||||.|+..+    +.+++++|+
T Consensus       127 v~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~G-adi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll  205 (494)
T PHA02989        127 LRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFG-VNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLI  205 (494)
T ss_pred             HHHHHHCCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHcC-CCccccccccCCChHHHHHhcccccccHHHHHHHH
Confidence            99999999998567889999999999764  6899999999985 45555 6788999999998764    899999999


Q ss_pred             hCCcccccccCCCCCCHHHHHHhC------CCHHHHHHHHhcCcccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCC
Q 011183          153 SKDPQLARRTDKKGQTALHMAVKG------QSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTN  226 (491)
Q Consensus       153 ~~~~~~~~~~d~~g~t~Lh~Aa~~------~~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~~~~~iv~~Ll~~~g~~  226 (491)
                      ++|.++ +..|..|.|+||.++..      +..+++++|+. +++ ++.+|..|+||||+|+..++.+++++|++ .|+|
T Consensus       206 ~~Ga~v-n~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~-~ad-vn~~d~~G~TpL~~Aa~~~~~~~v~~LL~-~Gad  281 (494)
T PHA02989        206 KKGVNI-ETNNNGSESVLESFLDNNKILSKKEFKVLNFILK-YIK-INKKDKKGFNPLLISAKVDNYEAFNYLLK-LGDD  281 (494)
T ss_pred             hCCCCc-cccCCccccHHHHHHHhchhhcccchHHHHHHHh-CCC-CCCCCCCCCCHHHHHHHhcCHHHHHHHHH-cCCC
Confidence            999997 67788899999988764      34677887665 577 88999999999999999999999999999 7999


Q ss_pred             cccccCCCCCHHHHHhhCCCchhhHHHHHHHHHcC
Q 011183          227 VNALTRDHKTALDIAEGLPSSEEASEIKDCLARCG  261 (491)
Q Consensus       227 ~~~~d~~G~t~L~~A~~~~~~~~~~~i~~~L~~~g  261 (491)
                      ++.+|..|+||||+|+..++.+    +++.|++.+
T Consensus       282 in~~d~~G~TpL~~A~~~~~~~----iv~~LL~~~  312 (494)
T PHA02989        282 IYNVSKDGDTVLTYAIKHGNID----MLNRILQLK  312 (494)
T ss_pred             ccccCCCCCCHHHHHHHcCCHH----HHHHHHhcC
Confidence            9999999999999999887654    666666654

>PHA02798 ankyrin-like protein; Provisional

Probab=99.97  E-value=1.1e-28  Score=257.53  Aligned_cols=258  Identities=14%  Similarity=0.189  Sum_probs=216.8

Q ss_pred             hhhccCCCCCCHHHHHHH--cCCHHHHHHHHhccCccccccCCCCCChHHHHHHHc-----CcHHHHHHHHhcCCCCccc
Q 011183           21 VVNEVNELGETALFTAAD--KGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQ-----GHHAIVQVLLDHDPSLSQT   93 (491)
Q Consensus        21 ~l~~~~~~g~T~Lh~Aa~--~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~-----g~~~iv~~Ll~~~~~l~~~   93 (491)
                      .++.. ..|.|+++.+..  .++.++|+.|+++|++  ++..|..|.||||.|+.+     ++.+++++|+++|+++ +.
T Consensus        29 ~~~~~-~~~~~~~~~yl~~~~~~~~iv~~Ll~~Gad--vn~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~Gadi-N~  104 (489)
T PHA02798         29 NPNEI-VNEYSIFQKYLQRDSPSTDIVKLFINLGAN--VNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADI-NK  104 (489)
T ss_pred             Chhhh-cccchHHHHHHhCCCCCHHHHHHHHHCCCC--CCCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCC-CC
Confidence            34443 457788774444  4479999999999886  677899999999999864     7799999999999997 77


Q ss_pred             CCCCCCCHHHHHHHcC---CHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCC---HHHHHHHHhCCcccccccCCCCC
Q 011183           94 TGPSNATPLVSAATRG---HTAVVNELLSKDGGLLEISRSNGKNALHFAARQGH---VDVVKALLSKDPQLARRTDKKGQ  167 (491)
Q Consensus        94 ~~~~g~tpL~~A~~~g---~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~---~~iv~~Ll~~~~~~~~~~d~~g~  167 (491)
                      .|..|.||||+|+..+   +.+++++|+++ |++++..|.+|.||||+|+..|+   .+++++|+++|.++....+..|.
T Consensus       105 ~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~-Gadvn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~  183 (489)
T PHA02798        105 KNSDGETPLYCLLSNGYINNLEILLFMIEN-GADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKY  183 (489)
T ss_pred             CCCCcCcHHHHHHHcCCcChHHHHHHHHHc-CCCccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcccccCcCCC
Confidence            8899999999999876   78999999988 67789999999999999999998   99999999999998544466899


Q ss_pred             CHHHHHHhC----CCHHHHHHHHhcCcccccCCCCCCChHHH-------HHHHcCcHHHHHHHhcCCCCCcccccCCCCC
Q 011183          168 TALHMAVKG----QSCEVVKLLLEADAAIVMLPDKFGNTALH-------VATRKKRTEIVTELLSLPDTNVNALTRDHKT  236 (491)
Q Consensus       168 t~Lh~Aa~~----~~~~iv~~Ll~~~~~~~~~~d~~G~TpLh-------~A~~~~~~~iv~~Ll~~~g~~~~~~d~~G~t  236 (491)
                      ||||.+++.    ++.+++++|+++|++ ++..|..|+|+++       .+...++.+++++|+.  ++|+|.+|..|+|
T Consensus       184 t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~-i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~--~~dvN~~d~~G~T  260 (489)
T PHA02798        184 DTLHCYFKYNIDRIDADILKLFVDNGFI-INKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFS--YIDINQVDELGFN  260 (489)
T ss_pred             cHHHHHHHhccccCCHHHHHHHHHCCCC-cccCCccccchHHHHHHHHHhhcccchHHHHHHHHh--cCCCCCcCcCCcc
Confidence            999999764    479999999999998 7778888999877       2445677888888876  6999999999999


Q ss_pred             HHHHHhhCCCchhhHHHHHHHHHcCccccccCCCchHHHHHHHHHhhhhhhhhh
Q 011183          237 ALDIAEGLPSSEEASEIKDCLARCGAVRANELNQPRDELRKTVTQIKKDVHTQL  290 (491)
Q Consensus       237 ~L~~A~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l  290 (491)
                      |||+|+..++.    ++++.|++.|+..+.....+.+++..+......++.+.+
T Consensus       261 PL~~A~~~~~~----~~v~~LL~~GAdin~~d~~G~TpL~~A~~~~~~~iv~~l  310 (489)
T PHA02798        261 PLYYSVSHNNR----KIFEYLLQLGGDINIITELGNTCLFTAFENESKFIFNSI  310 (489)
T ss_pred             HHHHHHHcCcH----HHHHHHHHcCCcccccCCCCCcHHHHHHHcCcHHHHHHH
Confidence            99999987654    588999999999888888888888887765555544443

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.97  E-value=6e-30  Score=255.00  Aligned_cols=199  Identities=33%  Similarity=0.408  Sum_probs=181.0

Q ss_pred             hhhhHHHHHhhchhhhhccCCCCCCHHHHHHHcCCHHHHHHHHhccCccccccCC-CCCChHHHHHHHcCcHHHHHHHHh
Q 011183            7 GAEFDTEVAEIRSSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKN-RSGFDPLHIAAVQGHHAIVQVLLD   85 (491)
Q Consensus         7 ~~~~~~~~~~~~~~~l~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~-~~g~TpLh~A~~~g~~~iv~~Ll~   85 (491)
                      .-+-+.++.+..+..++..|.+|.|+||+||.+++++++++|+++|++.+  ... .-|.||||+|+++|+..+|++|++
T Consensus        56 ~l~~v~~lve~~g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn--~~gG~l~stPLHWAar~G~~~vv~lLlq  133 (600)
T KOG0509|consen   56 ELETVKELVESEGESVNNPDREGVTLLHWAAINNRLDVARYLISHGADVN--AIGGVLGSTPLHWAARNGHISVVDLLLQ  133 (600)
T ss_pred             hHHHHHHHHhhcCcCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCcc--ccCCCCCCCcchHHHHcCcHHHHHHHHH
Confidence            34566788887799999999999999999999999999999999998854  333 568899999999999999999999


Q ss_pred             cCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhCCcccccccCCC
Q 011183           86 HDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKK  165 (491)
Q Consensus        86 ~~~~l~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~  165 (491)
                      +|+++ +..|.+|.+|||.|++.|+.-.+-+||.++ .+++.+|.+|+||||+|+.+|+...++.|++.++.+....|.+
T Consensus       134 hGAdp-t~~D~~G~~~lHla~~~~~~~~vayll~~~-~d~d~~D~~grTpLmwAaykg~~~~v~~LL~f~a~~~~~d~~~  211 (600)
T KOG0509|consen  134 HGADP-TLKDKQGLTPLHLAAQFGHTALVAYLLSKG-ADIDLRDNNGRTPLMWAAYKGFALFVRRLLKFGASLLLTDDNH  211 (600)
T ss_pred             cCCCC-ceecCCCCcHHHHHHHhCchHHHHHHHHhc-ccCCCcCCCCCCHHHHHHHhcccHHHHHHHHhccccccccccc
Confidence            99998 789999999999999999999999999885 8899999999999999999999888999999999987666799


Q ss_pred             CCCHHHHHHhCCCHHHHHHHHhcCcccccCCCCCCChHHHHHHHc
Q 011183          166 GQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRK  210 (491)
Q Consensus       166 g~t~Lh~Aa~~~~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~  210 (491)
                      |.||||+|+..|+.+++.++++.+++ ...+|.+|.||+.+|...
T Consensus       212 g~TpLHwa~~~gN~~~v~Ll~~g~~~-~d~~~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  212 GNTPLHWAVVGGNLTAVKLLLEGGAD-LDKTNTNGKTPFDLAQER  255 (600)
T ss_pred             CCchHHHHHhcCCcceEehhhhcCCc-ccccccCCCCHHHHHHHh
Confidence            99999999999999999955555555 788899999999999877

>PHA02917 ankyrin-like protein; Provisional

Probab=99.96  E-value=1.5e-28  Score=261.09  Aligned_cols=241  Identities=18%  Similarity=0.140  Sum_probs=196.2

Q ss_pred             HHHHhhchhhhhccCCCCCCHHHHHHHc---CCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHH----HHHHHH
Q 011183           12 TEVAEIRSSVVNEVNELGETALFTAADK---GHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHA----IVQVLL   84 (491)
Q Consensus        12 ~~~~~~~~~~l~~~~~~g~T~Lh~Aa~~---g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~----iv~~Ll   84 (491)
                      .+++. ++..++..|.+|+||||+|+..   |+.++|+.||+.|++  ++..+..|.||||.|+..|+.+    +++.|+
T Consensus        16 ~~l~~-~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~--v~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll   92 (661)
T PHA02917         16 KQMLR-DRDPNDTRNQFKNNALHAYLFNEHCNNVEVVKLLLDSGTN--PLHKNWRQLTPLEEYTNSRHVKVNKDIAMALL   92 (661)
T ss_pred             HHHHh-ccCcccccCCCCCcHHHHHHHhhhcCcHHHHHHHHHCCCC--ccccCCCCCCHHHHHHHcCChhHHHHHHHHHH
Confidence            34443 6777788899999999998665   889999999999877  5678999999999999999854    567888


Q ss_pred             hcCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHH--HcCCHHHHHHHHhCCccccccc
Q 011183           85 DHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAA--RQGHVDVVKALLSKDPQLARRT  162 (491)
Q Consensus        85 ~~~~~l~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~--~~g~~~iv~~Ll~~~~~~~~~~  162 (491)
                      +.+... +..+  ..+++++|+..|+.+++++|+++ |++++..|.+|+||||.++  ..|+.+++++|+++|+++. ..
T Consensus        93 ~~~~~~-n~~~--~~~~~~~a~~~~~~e~vk~Ll~~-Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn-~~  167 (661)
T PHA02917         93 EATGYS-NIND--FNIFSYMKSKNVDVDLIKVLVEH-GFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVL-YE  167 (661)
T ss_pred             hccCCC-CCCC--cchHHHHHhhcCCHHHHHHHHHc-CCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCcc-cc
Confidence            765432 2222  23677889999999999999988 7789999999999999654  5789999999999999873 33


Q ss_pred             C---CCC-----------CCHHHHHHh-----------CCCHHHHHHHHhcCcccccCCCCCCChHHHHHHHcCcH--HH
Q 011183          163 D---KKG-----------QTALHMAVK-----------GQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRT--EI  215 (491)
Q Consensus       163 d---~~g-----------~t~Lh~Aa~-----------~~~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~~~~--~i  215 (491)
                      |   ..|           .||||+|+.           .++.+++++|+++|++ ++.+|.+|+||||+|+..|+.  ++
T Consensus       168 d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gad-vn~~d~~G~TpLh~A~~~g~~~~ei  246 (661)
T PHA02917        168 DEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIK-PSSIDKNYCTALQYYIKSSHIDIDI  246 (661)
T ss_pred             ccccccccccccccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCC-cccCCCCCCcHHHHHHHcCCCcHHH
Confidence            3   234           599999986           4689999999999999 899999999999999999985  79


Q ss_pred             HHHHhcCCCCCcc----cccCCCCCHHHHHhhCC-----CchhhHHHHHHHHHcCcc
Q 011183          216 VTELLSLPDTNVN----ALTRDHKTALDIAEGLP-----SSEEASEIKDCLARCGAV  263 (491)
Q Consensus       216 v~~Ll~~~g~~~~----~~d~~G~t~L~~A~~~~-----~~~~~~~i~~~L~~~ga~  263 (491)
                      |++|++  |++++    ..|..|.+|+++|...+     ......+++++|++.|+.
T Consensus       247 vk~Li~--g~d~~~~~~~~~~~~~~~~~~a~yl~~~~~~~~~v~~~iv~~Li~~Ga~  301 (661)
T PHA02917        247 VKLLMK--GIDNTAYSYIDDLTCCTRGIMADYLNSDYRYNKDVDLDLVKLFLENGKP  301 (661)
T ss_pred             HHHHHh--CCcccccccccCcccccchHHHHHHHhhccccccchHHHHHHHHhCCCC
Confidence            999975  77765    46778889999998532     112356899999999975

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.96  E-value=1.1e-28  Score=236.25  Aligned_cols=191  Identities=35%  Similarity=0.492  Sum_probs=171.8

Q ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHhcc-Cccc------cccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCC
Q 011183           26 NELGETALFTAADKGHIEVVNELLKYS-TKEG------LTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSN   98 (491)
Q Consensus        26 ~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~-~~~~------l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g   98 (491)
                      +.+|.|||.+||++||.++|++|+++. ++..      .+-.+-+|-+||..|+..||.++|+.|+++++++ +.....+
T Consensus        39 ~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappLWaAsaAGHl~vVk~L~~~ga~V-N~tT~TN  117 (615)
T KOG0508|consen   39 VQNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLWAASAAGHLEVVKLLLRRGASV-NDTTRTN  117 (615)
T ss_pred             ccCCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhhHHhccCcHHHHHHHHHhcCcc-ccccccC
Confidence            567889999999999999999999943 2211      2234556889999999999999999999999988 4555667


Q ss_pred             CCHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCCHHHHHHhCCC
Q 011183           99 ATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQS  178 (491)
Q Consensus        99 ~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~~  178 (491)
                      .|||-.||.-||.+++++|+++ ++++++.|..|.|.||+||.+|+.+|+++|++.++++ +.++.+|+|+||.|++.|+
T Consensus       118 StPLraACfDG~leivKyLvE~-gad~~IanrhGhTcLmIa~ykGh~~I~qyLle~gADv-n~ks~kGNTALH~caEsG~  195 (615)
T KOG0508|consen  118 STPLRAACFDGHLEIVKYLVEH-GADPEIANRHGHTCLMIACYKGHVDIAQYLLEQGADV-NAKSYKGNTALHDCAESGS  195 (615)
T ss_pred             CccHHHHHhcchhHHHHHHHHc-CCCCcccccCCCeeEEeeeccCchHHHHHHHHhCCCc-chhcccCchHHHhhhhccc
Confidence            7999999999999999999977 7889999999999999999999999999999999998 8889999999999999999


Q ss_pred             HHHHHHHHhcCcccccCCCCCCChHHHHHHHcCcHHHHHHHhc
Q 011183          179 CEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLS  221 (491)
Q Consensus       179 ~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~~~~~iv~~Ll~  221 (491)
                      .+++++|+++|+.+  ..|..|.|||..|+..|+.++|+.|+.
T Consensus       196 vdivq~Ll~~ga~i--~~d~~GmtPL~~Aa~tG~~~iVe~L~~  236 (615)
T KOG0508|consen  196 VDIVQLLLKHGAKI--DVDGHGMTPLLLAAVTGHTDIVERLLQ  236 (615)
T ss_pred             HHHHHHHHhCCcee--eecCCCCchHHHHhhhcchHHHHHHhc
Confidence            99999999999874  368889999999999999999999996

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.96  E-value=1.1e-27  Score=220.97  Aligned_cols=177  Identities=16%  Similarity=0.199  Sum_probs=95.2

Q ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcC--cHHHHHHHHhcCCCCcccCCCCCCCH
Q 011183           24 EVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQG--HHAIVQVLLDHDPSLSQTTGPSNATP  101 (491)
Q Consensus        24 ~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g--~~~iv~~Ll~~~~~l~~~~~~~g~tp  101 (491)
                      ...+.+.||||.|+..|+.+.|+.|++.     .+..|..|.||||+|+..+  +.+++++|+++|+++....+..|.||
T Consensus        16 ~~~~~~~~pL~~A~~~~~~~~vk~Li~~-----~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~Tp   90 (209)
T PHA02859         16 YLFYRYCNPLFYYVEKDDIEGVKKWIKF-----VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSA   90 (209)
T ss_pred             HHhhccCcHHHHHHHhCcHHHHHHHHHh-----hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCCCH
Confidence            3355667777777777777777777753     2345666777777776643  67777777777777633223456666


Q ss_pred             HHHHHHc---CCHHHHHHHHhcCCCcccccCCCCCcHHHHHHH--cCCHHHHHHHHhCCcccccccCCCCCCHHHH-HHh
Q 011183          102 LVSAATR---GHTAVVNELLSKDGGLLEISRSNGKNALHFAAR--QGHVDVVKALLSKDPQLARRTDKKGQTALHM-AVK  175 (491)
Q Consensus       102 L~~A~~~---g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~--~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~-Aa~  175 (491)
                      ||+|+..   ++.+++++|+++ +.+++..|.+|.||||.|+.  .++.+++++|++++.++ +.+|..|.||||. |+.
T Consensus        91 Lh~a~~~~~~~~~eiv~~Ll~~-gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadi-n~~d~~g~t~Lh~~a~~  168 (209)
T PHA02859         91 LHHYLSFNKNVEPEILKILIDS-GSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSF-LNKDFDNNNILYSYILF  168 (209)
T ss_pred             HHHHHHhCccccHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCc-ccccCCCCcHHHHHHHh
Confidence            6665542   245555555544 34445555555555555443  23444444444444443 3344444444443 233


Q ss_pred             CCCHHHHHHHHhcCcccccCCCCCCChHHHHHH
Q 011183          176 GQSCEVVKLLLEADAAIVMLPDKFGNTALHVAT  208 (491)
Q Consensus       176 ~~~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~  208 (491)
                      .++.+++++|++.|++ ++.+|..|.||||+|.
T Consensus       169 ~~~~~iv~~Ll~~Gad-i~~~d~~g~tpl~la~  200 (209)
T PHA02859        169 HSDKKIFDFLTSLGID-INETNKSGYNCYDLIK  200 (209)
T ss_pred             cCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHh
Confidence            3444444444444444 3444444444444444

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.95  E-value=2.9e-27  Score=218.26  Aligned_cols=176  Identities=18%  Similarity=0.214  Sum_probs=156.0

Q ss_pred             CCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcC--CHHHHHHHHhcCCCcccccC-CCCCcHHH
Q 011183           61 NRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRG--HTAVVNELLSKDGGLLEISR-SNGKNALH  137 (491)
Q Consensus        61 ~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~~g--~~~~v~~LL~~~~~~~~~~d-~~g~tpLh  137 (491)
                      ...+.||||.|+..|+.++|+.|++..    +..|..|.||||+|+..+  +.+++++|++. +++++..+ ..|.||||
T Consensus        18 ~~~~~~pL~~A~~~~~~~~vk~Li~~~----n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~-gadvn~~~~~~g~TpLh   92 (209)
T PHA02859         18 FYRYCNPLFYYVEKDDIEGVKKWIKFV----NDCNDLYETPIFSCLEKDKVNVEILKFLIEN-GADVNFKTRDNNLSALH   92 (209)
T ss_pred             hhccCcHHHHHHHhCcHHHHHHHHHhh----hccCccCCCHHHHHHHcCCCCHHHHHHHHHC-CCCCCccCCCCCCCHHH
Confidence            456789999999999999999999852    456789999999999854  89999999998 56677776 58999999


Q ss_pred             HHHHc---CCHHHHHHHHhCCcccccccCCCCCCHHHHHHh--CCCHHHHHHHHhcCcccccCCCCCCChHHHH-HHHcC
Q 011183          138 FAARQ---GHVDVVKALLSKDPQLARRTDKKGQTALHMAVK--GQSCEVVKLLLEADAAIVMLPDKFGNTALHV-ATRKK  211 (491)
Q Consensus       138 ~A~~~---g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~--~~~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~-A~~~~  211 (491)
                      +|+..   ++.+++++|+++++++ +.+|..|.||||.|+.  .++.+++++|++.|++ ++.+|.+|+||||. |+..+
T Consensus        93 ~a~~~~~~~~~eiv~~Ll~~gadi-n~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gad-in~~d~~g~t~Lh~~a~~~~  170 (209)
T PHA02859         93 HYLSFNKNVEPEILKILIDSGSSI-TEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVS-FLNKDFDNNNILYSYILFHS  170 (209)
T ss_pred             HHHHhCccccHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCC-cccccCCCCcHHHHHHHhcC
Confidence            98764   4799999999999998 7889999999999986  4689999999999999 78899999999996 56788


Q ss_pred             cHHHHHHHhcCCCCCcccccCCCCCHHHHHhhC
Q 011183          212 RTEIVTELLSLPDTNVNALTRDHKTALDIAEGL  244 (491)
Q Consensus       212 ~~~iv~~Ll~~~g~~~~~~d~~G~t~L~~A~~~  244 (491)
                      +.+++++|++ .|++++.+|..|+||+|+|...
T Consensus       171 ~~~iv~~Ll~-~Gadi~~~d~~g~tpl~la~~~  202 (209)
T PHA02859        171 DKKIFDFLTS-LGIDINETNKSGYNCYDLIKFR  202 (209)
T ss_pred             CHHHHHHHHH-cCCCCCCCCCCCCCHHHHHhhh
Confidence            9999999999 7999999999999999999764

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.95  E-value=2.1e-28  Score=263.04  Aligned_cols=236  Identities=33%  Similarity=0.395  Sum_probs=172.7

Q ss_pred             hchhhhhccCCCCCCHHHHHHHcCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcC-cHHHHHHHHhcCCCCcccCC
Q 011183           17 IRSSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQG-HHAIVQVLLDHDPSLSQTTG   95 (491)
Q Consensus        17 ~~~~~l~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g-~~~iv~~Ll~~~~~l~~~~~   95 (491)
                      ..+.++|..+..|.||||.|+..++.++|+.+++.+++  .+..+..|.||+|+|+..| ..+.+..+++.+.++ +..-
T Consensus       395 ~~ga~~~~~gk~gvTplh~aa~~~~~~~v~l~l~~gA~--~~~~~~lG~T~lhvaa~~g~~~~~~~~l~~~g~~~-n~~s  471 (1143)
T KOG4177|consen  395 EAGADPNSAGKNGVTPLHVAAHYGNPRVVKLLLKRGAS--PNAKAKLGYTPLHVAAKKGRYLQIARLLLQYGADP-NAVS  471 (1143)
T ss_pred             hccCCcccCCCCCcceeeehhhccCcceEEEEeccCCC--hhhHhhcCCChhhhhhhcccHhhhhhhHhhcCCCc-chhc
Confidence            34455566666666666666666666666666655554  3445555666666666666 566666666666665 4455


Q ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCCHHHHHHh
Q 011183           96 PSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVK  175 (491)
Q Consensus        96 ~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~  175 (491)
                      ..|.||||.|+..||.++++.+++.. ...+.....|.+++|.|...+...+++.+++++..+ +.++..|.||||+|+.
T Consensus       472 ~~G~T~Lhlaaq~Gh~~~~~llle~~-~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v-~~~~~r~~TpLh~A~~  549 (1143)
T KOG4177|consen  472 KQGFTPLHLAAQEGHTEVVQLLLEGG-ANDNLDAKKGLTPLHLAADEDTVKVAKILLEHGANV-DLRTGRGYTPLHVAVH  549 (1143)
T ss_pred             cccCcchhhhhccCCchHHHHhhhcC-CccCccchhccchhhhhhhhhhHHHHHHHhhcCCce-ehhcccccchHHHHHh
Confidence            66666666666666666666666553 334445556666666666666667777777777665 6678889999999999


Q ss_pred             CCCHHHHHHHHhcCcccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCchhhHHHHH
Q 011183          176 GQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKD  255 (491)
Q Consensus       176 ~~~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~d~~G~t~L~~A~~~~~~~~~~~i~~  255 (491)
                      .|+.++|++|+++|++ .+.+|+.|+||||.|+..|+.+++++|++ .|+++|..|.+|.|||++|...+...    +.+
T Consensus       550 ~g~v~~VkfLLe~gAd-v~ak~~~G~TPLH~Aa~~G~~~i~~LLlk-~GA~vna~d~~g~TpL~iA~~lg~~~----~~k  623 (1143)
T KOG4177|consen  550 YGNVDLVKFLLEHGAD-VNAKDKLGYTPLHQAAQQGHNDIAELLLK-HGASVNAADLDGFTPLHIAVRLGYLS----VVK  623 (1143)
T ss_pred             cCCchHHHHhhhCCcc-ccccCCCCCChhhHHHHcChHHHHHHHHH-cCCCCCcccccCcchhHHHHHhcccc----hhh
Confidence            9999999999999999 78888999999999999999999999999 89999999999999999999988766    555


Q ss_pred             HHHHcCcc
Q 011183          256 CLARCGAV  263 (491)
Q Consensus       256 ~L~~~ga~  263 (491)
                      .+...++.
T Consensus       624 ~l~~~~~~  631 (1143)
T KOG4177|consen  624 LLKVVTAT  631 (1143)
T ss_pred             HHHhccCc
Confidence            66666665

>PHA02792 ankyrin-like protein; Provisional

Probab=99.95  E-value=4.2e-27  Score=241.65  Aligned_cols=254  Identities=14%  Similarity=0.110  Sum_probs=203.2

Q ss_pred             ChhhhHHHHHhhchhhhhccCCCCCCHHHHHHH-cCCHHHHHHHHhccCcc-----------------------------
Q 011183            6 SGAEFDTEVAEIRSSVVNEVNELGETALFTAAD-KGHIEVVNELLKYSTKE-----------------------------   55 (491)
Q Consensus         6 ~~~~~~~~~~~~~~~~l~~~~~~g~T~Lh~Aa~-~g~~~~v~~Ll~~~~~~-----------------------------   55 (491)
                      ...|.+..+++ +|+++|..+..|.||+|+|+. .|+.|++++|++.|++.                             
T Consensus        83 ~~lElvk~LI~-~GAdvN~~~n~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  161 (631)
T PHA02792         83 IDIELLKLLIS-KGLEINSIKNGINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKIIIEQITRAEYYNWDDELDD  161 (631)
T ss_pred             ccHHHHHHHHH-cCCCcccccCCCCcceeEeecCCCChHHHHHHHHCCCCcccccccCcchhhhhcccccccchhhhccc
Confidence            34567777766 799999999999999999976 69999999999999751                             


Q ss_pred             -----ccccCCCCCChHHHHHHHcC-------cHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcC--CHHHHHHHHhcC
Q 011183           56 -----GLTRKNRSGFDPLHIAAVQG-------HHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRG--HTAVVNELLSKD  121 (491)
Q Consensus        56 -----~l~~~~~~g~TpLh~A~~~g-------~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~~g--~~~~v~~LL~~~  121 (491)
                           ..+.++..|.||||+|+..+       +.++++.|+++|+++ +..|..|.||||+|+.+.  +.|+++.|++..
T Consensus       162 ~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~-~~~d~~g~t~l~~~~~~~~i~~ei~~~L~~~~  240 (631)
T PHA02792        162 YDYDYTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEM-RYYTYREHTTLYYYVDKCDIKREIFDALFDSN  240 (631)
T ss_pred             cccccccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCc-CccCCCCChHHHHHHHcccchHHHHHHHHhcc
Confidence                 12356777999999999999       899999999999998 677889999999999998  677777766421


Q ss_pred             CC---------------------cc-------------------------------------------------------
Q 011183          122 GG---------------------LL-------------------------------------------------------  125 (491)
Q Consensus       122 ~~---------------------~~-------------------------------------------------------  125 (491)
                      -.                     .+                                                       
T Consensus       241 ~~~~~~~~~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~Yl~~~~v~  320 (631)
T PHA02792        241 YSGNELMNILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRYTDSIQDLLSEYVSYHTVY  320 (631)
T ss_pred             ccccchHhHHHHHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHhcCCcc
Confidence            00                     00                                                       


Q ss_pred             ------------cccCCCCCcHHHHHHHcCCHHHHHHHHhCCcccccccCCC--CCCHHHHHHhCCCH---HHHHHHHhc
Q 011183          126 ------------EISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKK--GQTALHMAVKGQSC---EVVKLLLEA  188 (491)
Q Consensus       126 ------------~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~--g~t~Lh~Aa~~~~~---~iv~~Ll~~  188 (491)
                                  +........++|.|+..|+.+++++|+++|+++ +..|..  +.||||.|+.....   +++++|+++
T Consensus       321 ieiIK~LId~Ga~~~r~~~~n~~~~Aa~~gn~eIVelLIs~GADI-N~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs~  399 (631)
T PHA02792        321 INVIKCMIDEGATLYRFKHINKYFQKFDNRDPKVVEYILKNGNVV-VEDDDNIINIMPLFPTLSIHESDVLSILKLCKPY  399 (631)
T ss_pred             HHHHHHHHHCCCccccCCcchHHHHHHHcCCHHHHHHHHHcCCch-hhhcCCCCChhHHHHHHHhccHhHHHHHHHHHhc
Confidence                        000123456788899999999999999999997 556665  46999998776654   457888999


Q ss_pred             CcccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhh--CCC-c---hhhHHHHHHHHHcCc
Q 011183          189 DAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEG--LPS-S---EEASEIKDCLARCGA  262 (491)
Q Consensus       189 ~~~~~~~~d~~G~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~d~~G~t~L~~A~~--~~~-~---~~~~~i~~~L~~~ga  262 (491)
                      |++ +|.+|..|.||||.|+..++.+++++|++ .|++++.+|..|+||+++|..  .+. .   +...++.+.+++.|.
T Consensus       400 GAD-IN~kD~~G~TPLh~Aa~~~n~eivelLLs-~GADIN~kD~~G~TpL~~A~~~~~~~~~~i~~~~~~il~lLLs~~p  477 (631)
T PHA02792        400 IDD-INKIDKHGRSILYYCIESHSVSLVEWLID-NGADINITTKYGSTCIGICVILAHACIPEIAELYIKILEIILSKLP  477 (631)
T ss_pred             CCc-cccccccCcchHHHHHHcCCHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCC
Confidence            998 78899999999999999999999999999 799999999999999999975  221 1   223467788888775


Q ss_pred             cc
Q 011183          263 VR  264 (491)
Q Consensus       263 ~~  264 (491)
                      ..
T Consensus       478 ~i  479 (631)
T PHA02792        478 TI  479 (631)
T ss_pred             Ch
Confidence            43

>PHA02730 ankyrin-like protein; Provisional

Probab=99.95  E-value=2.3e-26  Score=238.72  Aligned_cols=110  Identities=13%  Similarity=0.077  Sum_probs=69.3

Q ss_pred             HHHHHHHhcCcccccCCCCCCChHHHHHHHcCc----HHHHHHHhcCCCC--CcccccCCCCCHHHH---HhhCCC----
Q 011183          180 EVVKLLLEADAAIVMLPDKFGNTALHVATRKKR----TEIVTELLSLPDT--NVNALTRDHKTALDI---AEGLPS----  246 (491)
Q Consensus       180 ~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~~~----~~iv~~Ll~~~g~--~~~~~d~~G~t~L~~---A~~~~~----  246 (491)
                      +++++|+++|++ +|. +..|+||||+|+..++    .+++++|++ .|+  +++.+|..|+||||.   +.....    
T Consensus       360 eIvelLIs~GAd-IN~-k~~G~TpLH~Aa~~nnn~i~~eIvelLIs-~Ga~~dIN~kd~~G~T~Lh~~i~a~~~n~~~~~  436 (672)
T PHA02730        360 PILRCMLDNGAT-MDK-TTDNNYPLHDYFVNNNNIVDVNVVRFIVE-NNGHMAINHVSNNGRLCMYGLILSRFNNCGYHC  436 (672)
T ss_pred             HHHHHHHHCCCC-CCc-CCCCCcHHHHHHHHcCCcchHHHHHHHHH-cCCCccccccccCCCchHhHHHHHHhccccccc
Confidence            344444444444 333 2577888888877764    788888887 555  678888888888873   222211    


Q ss_pred             chh-hHHHHHHHHHcCccccccCCCchHHHHHHHHHhhhhhhhhhHH
Q 011183          247 SEE-ASEIKDCLARCGAVRANELNQPRDELRKTVTQIKKDVHTQLEQ  292 (491)
Q Consensus       247 ~~~-~~~i~~~L~~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~  292 (491)
                      .+. ..++.++|+.+|+..+.....+.+++..+......+..+.|.+
T Consensus       437 ~e~~~~~ivk~LIs~GADINakD~~G~TPLh~Aa~~~~~eive~LI~  483 (672)
T PHA02730        437 YETILIDVFDILSKYMDDIDMIDNENKTLLYYAVDVNNIQFARRLLE  483 (672)
T ss_pred             cchhHHHHHHHHHhcccchhccCCCCCCHHHHHHHhCCHHHHHHHHH
Confidence            111 2346788888888777777777778777766555555555443

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.95  E-value=7.4e-28  Score=258.81  Aligned_cols=265  Identities=30%  Similarity=0.340  Sum_probs=209.8

Q ss_pred             hchhhhhccCCCCCCHHHHHHHcCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCC
Q 011183           17 IRSSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGP   96 (491)
Q Consensus        17 ~~~~~l~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~   96 (491)
                      .....-...+++|.||+|.|+..|..++++.++..+.+  .+..++.|.||||.|+.+++.++++.+++++++. +..+.
T Consensus       362 ~~~~~~~~a~~k~~~pl~la~~~g~~~~v~Lll~~ga~--~~~~gk~gvTplh~aa~~~~~~~v~l~l~~gA~~-~~~~~  438 (1143)
T KOG4177|consen  362 EHGAQRRQAEEKGFTPLHLAVKSGRVSVVELLLEAGAD--PNSAGKNGVTPLHVAAHYGNPRVVKLLLKRGASP-NAKAK  438 (1143)
T ss_pred             ccccccCcccccCCcchhhhcccCchhHHHhhhhccCC--cccCCCCCcceeeehhhccCcceEEEEeccCCCh-hhHhh
Confidence            34444455567777777887777777777777777766  5667777788888888888888888888877776 66777


Q ss_pred             CCCCHHHHHHHcC-CHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCCHHHHHHh
Q 011183           97 SNATPLVSAATRG-HTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVK  175 (491)
Q Consensus        97 ~g~tpL~~A~~~g-~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~  175 (491)
                      .|.||+|.|+..| ..++...+++. +.+++..-..|.||||.|+..|+.+++..+++.++.. +...+.|-++||+|..
T Consensus       439 lG~T~lhvaa~~g~~~~~~~~l~~~-g~~~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~-~~~~~~~l~~lhla~~  516 (1143)
T KOG4177|consen  439 LGYTPLHVAAKKGRYLQIARLLLQY-GADPNAVSKQGFTPLHLAAQEGHTEVVQLLLEGGAND-NLDAKKGLTPLHLAAD  516 (1143)
T ss_pred             cCCChhhhhhhcccHhhhhhhHhhc-CCCcchhccccCcchhhhhccCCchHHHHhhhcCCcc-Cccchhccchhhhhhh
Confidence            7788888888887 56666555554 6667777788888888888888888888888877554 4556678888888888


Q ss_pred             CCCHHHHHHHHhcCcccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCchhhHHHHH
Q 011183          176 GQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKD  255 (491)
Q Consensus       176 ~~~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~d~~G~t~L~~A~~~~~~~~~~~i~~  255 (491)
                      .+...+++.++++|++ .+.++..|.||||.|+.+|+.++|++||+ .|+|++.+++.|+||||.|+..+.    .++.+
T Consensus       517 ~~~v~~~~~l~~~ga~-v~~~~~r~~TpLh~A~~~g~v~~VkfLLe-~gAdv~ak~~~G~TPLH~Aa~~G~----~~i~~  590 (1143)
T KOG4177|consen  517 EDTVKVAKILLEHGAN-VDLRTGRGYTPLHVAVHYGNVDLVKFLLE-HGADVNAKDKLGYTPLHQAAQQGH----NDIAE  590 (1143)
T ss_pred             hhhHHHHHHHhhcCCc-eehhcccccchHHHHHhcCCchHHHHhhh-CCccccccCCCCCChhhHHHHcCh----HHHHH
Confidence            8888888888888888 77889999999999999999999999999 899999999999999999999874    45999


Q ss_pred             HHHHcCccccccCCCchHHHHHHHHHhhhhhhhhhHH
Q 011183          256 CLARCGAVRANELNQPRDELRKTVTQIKKDVHTQLEQ  292 (491)
Q Consensus       256 ~L~~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~  292 (491)
                      +|.++|+..+.......+++.......+-++.+.+..
T Consensus       591 LLlk~GA~vna~d~~g~TpL~iA~~lg~~~~~k~l~~  627 (1143)
T KOG4177|consen  591 LLLKHGASVNAADLDGFTPLHIAVRLGYLSVVKLLKV  627 (1143)
T ss_pred             HHHHcCCCCCcccccCcchhHHHHHhcccchhhHHHh
Confidence            9999999998877777777777766555555544443

>PHA02730 ankyrin-like protein; Provisional

Probab=99.95  E-value=6.8e-26  Score=235.22  Aligned_cols=267  Identities=16%  Similarity=0.162  Sum_probs=203.5

Q ss_pred             hhh-ccCCCCCCHHHHHHHcC---CHHHHHHHHhccCccccccCCCCCChHHHHHHHcC--cHHHHHHHHhcCCCCc-cc
Q 011183           21 VVN-EVNELGETALFTAADKG---HIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQG--HHAIVQVLLDHDPSLS-QT   93 (491)
Q Consensus        21 ~l~-~~~~~g~T~Lh~Aa~~g---~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g--~~~iv~~Ll~~~~~l~-~~   93 (491)
                      .+| ..|..|+||||+|+..|   +.++|+.||++|++  ++.+|..|.||||+|+..+  +.+++++|++.|++.. +.
T Consensus        32 ~in~~kd~~G~TaLh~A~~~~~~~~~eivklLLs~GAd--in~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~~~~~~~  109 (672)
T PHA02730         32 NLSKHIDRRGNNALHCYVSNKCDTDIKIVRLLLSRGVE--RLCRNNEGLTPLGVYSKRKYVKSQIVHLLISSYSNASNEL  109 (672)
T ss_pred             chhhhcCCCCCcHHHHHHHcCCcCcHHHHHHHHhCCCC--CcccCCCCCChHHHHHHcCCCcHHHHHHHHhcCCCCCccc
Confidence            444 88899999999999997   59999999999987  6788999999999999977  7999999999965431 33


Q ss_pred             CCCCCCCHHHHHHH--cCCHHHHHHHHhcCCCcccccC-----CCCCcHHHHHHHcCCHHHHHHHHhCCcccc------c
Q 011183           94 TGPSNATPLVSAAT--RGHTAVVNELLSKDGGLLEISR-----SNGKNALHFAARQGHVDVVKALLSKDPQLA------R  160 (491)
Q Consensus        94 ~~~~g~tpL~~A~~--~g~~~~v~~LL~~~~~~~~~~d-----~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~------~  160 (491)
                      .+..+.+|||.++.  .++.+++++|+..++.+++...     ..|.+|++++...++.++|++|+++|+++.      .
T Consensus       110 ~~~~~d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~eIvklLi~~g~~v~g~~~~~~  189 (672)
T PHA02730        110 TSNINDFDLYSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDIYVTTPNPRPEVLLWLLKSECYSTGYVFRSC  189 (672)
T ss_pred             ccccCCchHHHHHHhcCCcHHHHHHHHHhcCCChhhhhhhhccccchhhhhHhcCCCchHHHHHHHHcCCcccccccccc
Confidence            56668899999998  8999999999975555544332     278999999999999999999999999873      1


Q ss_pred             ccCCCC-CCHHHHH------HhCCCHHHHHHHHhcCcccccCCCCCCChHHHH--HHHcCcHHHHHHHhc----------
Q 011183          161 RTDKKG-QTALHMA------VKGQSCEVVKLLLEADAAIVMLPDKFGNTALHV--ATRKKRTEIVTELLS----------  221 (491)
Q Consensus       161 ~~d~~g-~t~Lh~A------a~~~~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~--A~~~~~~~iv~~Ll~----------  221 (491)
                      ..|..+ .|.||+.      ..+++.|++++|+++|++ +|.+|.+|.||||+  |...++.+++++|++          
T Consensus       190 ~~~~~~c~~~l~~~il~~~~~~~n~~eiv~lLIs~Gad-IN~kd~~G~TpLh~~~~~~~~~~eiv~~Li~~~~~~~~~~~  268 (672)
T PHA02730        190 MYDSDRCKNSLHYYILSHRESESLSKDVIKCLIDNNVS-IHGRDEGGSLPIQYYWSCSTIDIEIVKLLIKDVDTCSVYDD  268 (672)
T ss_pred             cccCCccchhHHHHHHhhhhhhccCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCcccHHHHHHHHhcccccccccc
Confidence            123333 4556644      356789999999999999 89999999999995  555677999999998          


Q ss_pred             ---------------------CCCCCccc--------------------ccCCCCC---------------------HHH
Q 011183          222 ---------------------LPDTNVNA--------------------LTRDHKT---------------------ALD  239 (491)
Q Consensus       222 ---------------------~~g~~~~~--------------------~d~~G~t---------------------~L~  239 (491)
                                           ..|+|...                    .|..|.+                     .|+
T Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~~~~~~~q~~l~  348 (672)
T PHA02730        269 ISQPYIRGVLADYLNKRFRVTPYNVDMEIVNLLIEGRHTLIDVMRSITSYDSREYNHYIIDNILKRFRQQDESIVQAMLI  348 (672)
T ss_pred             ccchhhhhhHHHhhhhhhhcccCCcchHHHHHHhhccCcchhhhhccccccccccchhHHHHHHHhhhccchhHHHHHHH
Confidence                                 13777655                    4555543                     233


Q ss_pred             HHhhCCCchhhHHHHHHHHHcCccccccCCCchHHHHHHHHHhh----hhhhhhhHH
Q 011183          240 IAEGLPSSEEASEIKDCLARCGAVRANELNQPRDELRKTVTQIK----KDVHTQLEQ  292 (491)
Q Consensus       240 ~A~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~l~~~~~~~~----~~~~~~l~~  292 (491)
                      .=.+.+. -...+++++|+++|+..+.. ..+.+++..+.....    .++.+.|-+
T Consensus       349 ~Y~~~~~-~v~ieIvelLIs~GAdIN~k-~~G~TpLH~Aa~~nnn~i~~eIvelLIs  403 (672)
T PHA02730        349 NYLHYGD-MVSIPILRCMLDNGATMDKT-TDNNYPLHDYFVNNNNIVDVNVVRFIVE  403 (672)
T ss_pred             HHHhcCC-cCcHHHHHHHHHCCCCCCcC-CCCCcHHHHHHHHcCCcchHHHHHHHHH
Confidence            2222211 13467899999999988765 567788886655432    455555544

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.95  E-value=3.8e-27  Score=225.64  Aligned_cols=216  Identities=29%  Similarity=0.387  Sum_probs=183.4

Q ss_pred             HHHHcCCHHHHHHHHhccCccc---cccCCCCCChHHHHHHHcCcHHHHHHHHhcC-CCCc-------ccCCCCCCCHHH
Q 011183           35 TAADKGHIEVVNELLKYSTKEG---LTRKNRSGFDPLHIAAVQGHHAIVQVLLDHD-PSLS-------QTTGPSNATPLV  103 (491)
Q Consensus        35 ~Aa~~g~~~~v~~Ll~~~~~~~---l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~-~~l~-------~~~~~~g~tpL~  103 (491)
                      -|++.|.+..+..|+....+..   +.-...+|.|||-+||++||.++|++|+++. ++..       ......|-+||.
T Consensus        10 naa~~g~l~~l~~ll~~~s~~ei~~l~~~~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappLW   89 (615)
T KOG0508|consen   10 NAARDGKLQLLAKLLINSSNEEIISLIGEVQNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLW   89 (615)
T ss_pred             HHhhhhhHHHHHHHHhCCchHHHHHHhccccCCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhh
Confidence            6777888887777776433221   2334567889999999999999999999963 3221       122346889999


Q ss_pred             HHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCCHHHHHHhCCCHHHHH
Q 011183          104 SAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVK  183 (491)
Q Consensus       104 ~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~~~~iv~  183 (491)
                      .|+..||.++|+.|++++ +.++.......|||-.||..|+.+++++|+++++++ +..|+.|.|.||+|+.+|+.+|++
T Consensus        90 aAsaAGHl~vVk~L~~~g-a~VN~tT~TNStPLraACfDG~leivKyLvE~gad~-~IanrhGhTcLmIa~ykGh~~I~q  167 (615)
T KOG0508|consen   90 AASAAGHLEVVKLLLRRG-ASVNDTTRTNSTPLRAACFDGHLEIVKYLVEHGADP-EIANRHGHTCLMIACYKGHVDIAQ  167 (615)
T ss_pred             HHhccCcHHHHHHHHHhc-CccccccccCCccHHHHHhcchhHHHHHHHHcCCCC-cccccCCCeeEEeeeccCchHHHH
Confidence            999999999999999985 778877778889999999999999999999999998 888999999999999999999999


Q ss_pred             HHHhcCcccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCchhhHHHHHHHHH
Q 011183          184 LLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLAR  259 (491)
Q Consensus       184 ~Ll~~~~~~~~~~d~~G~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~d~~G~t~L~~A~~~~~~~~~~~i~~~L~~  259 (491)
                      +|++.|++ +|.++..|+|+||.|++.|+.+++++|++ .|+.+. +|..|.|||-.|...+..+    +++.|++
T Consensus       168 yLle~gAD-vn~ks~kGNTALH~caEsG~vdivq~Ll~-~ga~i~-~d~~GmtPL~~Aa~tG~~~----iVe~L~~  236 (615)
T KOG0508|consen  168 YLLEQGAD-VNAKSYKGNTALHDCAESGSVDIVQLLLK-HGAKID-VDGHGMTPLLLAAVTGHTD----IVERLLQ  236 (615)
T ss_pred             HHHHhCCC-cchhcccCchHHHhhhhcccHHHHHHHHh-CCceee-ecCCCCchHHHHhhhcchH----HHHHHhc
Confidence            99999999 89999999999999999999999999999 788776 5667999999999887665    5666664

>PHA02795 ankyrin-like protein; Provisional

Probab=99.95  E-value=2.3e-26  Score=228.30  Aligned_cols=213  Identities=16%  Similarity=0.104  Sum_probs=182.4

Q ss_pred             hhHHHHHhhchhhhhccCCCCCCHHHHHHHcCCHHHHHHHHhccCccc----cccCCCCCChHHHHHHH--cCcHHHHHH
Q 011183            9 EFDTEVAEIRSSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEG----LTRKNRSGFDPLHIAAV--QGHHAIVQV   82 (491)
Q Consensus         9 ~~~~~~~~~~~~~l~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~----l~~~~~~g~TpLh~A~~--~g~~~iv~~   82 (491)
                      +...|....++..+|..+.+|     +|+..+..|+++.|+.+|++.+    .-.++..++|+||.|+.  .|+.+++++
T Consensus        62 ~~~~~~~~~~~~~i~~~~~~~-----~~~~~~~k~~~~~l~s~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~  136 (437)
T PHA02795         62 DVLYDYFRIHRDNIDQYIVDR-----LFAYITYKDIISALVSKNYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDF  136 (437)
T ss_pred             HHHHHHHHHcCcchhhhhhhh-----HHhhcchHHHHHHHHhcccccchhhhhhhccccccHHHHHHHHhcCCCHHHHHH
Confidence            334455566777888888887     9999999999999999998854    11477789999999999  999999999


Q ss_pred             HHhcCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccc-----CCCCCcHHHHHHHcCCHHHHHHHHhCCcc
Q 011183           83 LLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEIS-----RSNGKNALHFAARQGHVDVVKALLSKDPQ  157 (491)
Q Consensus        83 Ll~~~~~l~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~-----d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~  157 (491)
                      |+++|+++. .  .++.||+|.|+..|+.+++++|++++....+..     +..+.+++|.|+..++.+++++|+++|++
T Consensus       137 LI~~GADIn-~--~~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GAD  213 (437)
T PHA02795        137 MVDHGAVIY-K--IECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIED  213 (437)
T ss_pred             HHHCCCCCC-C--CCCCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCC
Confidence            999999984 3  345899999999999999999999865333322     23478999999999999999999999999


Q ss_pred             cccccCCCCCCHHHHHHhCCCHHHHHHHHhcCcccccCCCCCCChHHHHHHHcCc--------HHHHHHHhcCCCCCccc
Q 011183          158 LARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKR--------TEIVTELLSLPDTNVNA  229 (491)
Q Consensus       158 ~~~~~d~~g~t~Lh~Aa~~~~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~~~--------~~iv~~Ll~~~g~~~~~  229 (491)
                      + +.+|..|.||||+|+..|+.+++++|++.|++ ++.+|..|.||||+|+..|+        .++++.|++ .|++++.
T Consensus       214 I-N~kD~~G~TpLh~Aa~~g~~eiVelLL~~GAd-IN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~-~gadI~~  290 (437)
T PHA02795        214 I-NQLDAGGRTLLYRAIYAGYIDLVSWLLENGAN-VNAVMSNGYTCLDVAVDRGSVIARRETHLKILEILLR-EPLSIDC  290 (437)
T ss_pred             c-CcCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHh-CCCCCCc
Confidence            7 78899999999999999999999999999999 78999999999999999984        689999998 7888876


Q ss_pred             ccC
Q 011183          230 LTR  232 (491)
Q Consensus       230 ~d~  232 (491)
                      .+.
T Consensus       291 ~~~  293 (437)
T PHA02795        291 IKL  293 (437)
T ss_pred             hhH
Confidence            543

>PHA02917 ankyrin-like protein; Provisional

Probab=99.94  E-value=9.5e-26  Score=239.85  Aligned_cols=211  Identities=19%  Similarity=0.260  Sum_probs=173.0

Q ss_pred             HHHHHHHHhccCccccccCCCCCChHHHHHHHc---CcHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCCHH----HH
Q 011183           42 IEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQ---GHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTA----VV  114 (491)
Q Consensus        42 ~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~---g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~~g~~~----~v  114 (491)
                      ++.|+.|+..+..  .+..|.+|+||||+|+..   |+.+++++|+++|+++ +..+..|.||||+|+..|+.+    ++
T Consensus        12 ~~~~~~l~~~~~~--~~~~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v-~~~~~~g~TpL~~Aa~~g~~~v~~~~~   88 (661)
T PHA02917         12 LDELKQMLRDRDP--NDTRNQFKNNALHAYLFNEHCNNVEVVKLLLDSGTNP-LHKNWRQLTPLEEYTNSRHVKVNKDIA   88 (661)
T ss_pred             HHHHHHHHhccCc--ccccCCCCCcHHHHHHHhhhcCcHHHHHHHHHCCCCc-cccCCCCCCHHHHHHHcCChhHHHHHH
Confidence            5678889876654  467799999999998555   8899999999999998 578899999999999999954    56


Q ss_pred             HHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCCHHHHHH--hCCCHHHHHHHHhcCccc
Q 011183          115 NELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAV--KGQSCEVVKLLLEADAAI  192 (491)
Q Consensus       115 ~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa--~~~~~~iv~~Ll~~~~~~  192 (491)
                      +.|++..+. .+..+  ..+++|.|+..|+.+++++|+++|.++ +..|.+|+||||.++  ..|+.+++++|+++|++ 
T Consensus        89 ~~Ll~~~~~-~n~~~--~~~~~~~a~~~~~~e~vk~Ll~~Gadi-n~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~-  163 (661)
T PHA02917         89 MALLEATGY-SNIND--FNIFSYMKSKNVDVDLIKVLVEHGFDL-SVKCENHRSVIENYVMTDDPVPEIIDLFIENGCS-  163 (661)
T ss_pred             HHHHhccCC-CCCCC--cchHHHHHhhcCCHHHHHHHHHcCCCC-CccCCCCccHHHHHHHccCCCHHHHHHHHHcCCC-
Confidence            777776443 23332  236778899999999999999999998 788999999999654  57899999999999998 


Q ss_pred             ccCCCC---CC-----------ChHHHHHHH-----------cCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCc
Q 011183          193 VMLPDK---FG-----------NTALHVATR-----------KKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSS  247 (491)
Q Consensus       193 ~~~~d~---~G-----------~TpLh~A~~-----------~~~~~iv~~Ll~~~g~~~~~~d~~G~t~L~~A~~~~~~  247 (491)
                      ++.+|.   .|           .||||+|+.           .++.+++++|++ .|+|+|.+|.+|.||||+|+..++.
T Consensus       164 vn~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~-~Gadvn~~d~~G~TpLh~A~~~g~~  242 (661)
T PHA02917        164 VLYEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLIN-HGIKPSSIDKNYCTALQYYIKSSHI  242 (661)
T ss_pred             ccccccccccccccccccccccccHHHHHHhhcccccccccccCcHHHHHHHHH-CCCCcccCCCCCCcHHHHHHHcCCC
Confidence            554443   34           599999986           468999999999 8999999999999999999988764


Q ss_pred             hhhHHHHHHHHHcCccc
Q 011183          248 EEASEIKDCLARCGAVR  264 (491)
Q Consensus       248 ~~~~~i~~~L~~~ga~~  264 (491)
                      +  .++++.|.+ |+..
T Consensus       243 ~--~eivk~Li~-g~d~  256 (661)
T PHA02917        243 D--IDIVKLLMK-GIDN  256 (661)
T ss_pred             c--HHHHHHHHh-CCcc
Confidence            3  467888865 6543

>PHA02795 ankyrin-like protein; Provisional

Probab=99.93  E-value=4.6e-25  Score=219.08  Aligned_cols=211  Identities=18%  Similarity=0.071  Sum_probs=178.8

Q ss_pred             HHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCc-----ccCCCCCCCHHHHHHH--cCCHHHHHH
Q 011183           44 VVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLS-----QTTGPSNATPLVSAAT--RGHTAVVNE  116 (491)
Q Consensus        44 ~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~-----~~~~~~g~tpL~~A~~--~g~~~~v~~  116 (491)
                      ..++++.+|++  ++.++.+|     +|+..+..+++++|+.+|++..     -..+.+++|+||+++.  .|+.+++++
T Consensus        64 ~~~~~~~~~~~--i~~~~~~~-----~~~~~~~k~~~~~l~s~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~  136 (437)
T PHA02795         64 LYDYFRIHRDN--IDQYIVDR-----LFAYITYKDIISALVSKNYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDF  136 (437)
T ss_pred             HHHHHHHcCcc--hhhhhhhh-----HHhhcchHHHHHHHHhcccccchhhhhhhccccccHHHHHHHHhcCCCHHHHHH
Confidence            34667777665  45455555     9999999999999999999964     1467789999999999  999999999


Q ss_pred             HHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhCCcccccccC-----CCCCCHHHHHHhCCCHHHHHHHHhcCcc
Q 011183          117 LLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTD-----KKGQTALHMAVKGQSCEVVKLLLEADAA  191 (491)
Q Consensus       117 LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d-----~~g~t~Lh~Aa~~~~~~iv~~Ll~~~~~  191 (491)
                      |+++ |++++.  .++.||+|.|+..|+.+++++|+++|.+..+..+     ..+.+++|.|+..++.+++++|+++|++
T Consensus       137 LI~~-GADIn~--~~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GAD  213 (437)
T PHA02795        137 MVDH-GAVIYK--IECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIED  213 (437)
T ss_pred             HHHC-CCCCCC--CCCCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCC
Confidence            9988 566665  3568999999999999999999999975433332     3478999999999999999999999999


Q ss_pred             cccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCc----hhhHHHHHHHHHcCccccc
Q 011183          192 IVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSS----EEASEIKDCLARCGAVRAN  266 (491)
Q Consensus       192 ~~~~~d~~G~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~d~~G~t~L~~A~~~~~~----~~~~~i~~~L~~~ga~~~~  266 (491)
                       +|.+|..|.||||+|+..|+.+++++|++ .|++++.+|..|.||||+|+..++.    ....+++++|++.|+....
T Consensus       214 -IN~kD~~G~TpLh~Aa~~g~~eiVelLL~-~GAdIN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~gadI~~  290 (437)
T PHA02795        214 -INQLDAGGRTLLYRAIYAGYIDLVSWLLE-NGANVNAVMSNGYTCLDVAVDRGSVIARRETHLKILEILLREPLSIDC  290 (437)
T ss_pred             -cCcCCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHhCCCCCCc
Confidence             89999999999999999999999999999 8999999999999999999987742    2345789999999886543

>PHA02792 ankyrin-like protein; Provisional

Probab=99.93  E-value=1.3e-24  Score=223.41  Aligned_cols=253  Identities=14%  Similarity=0.055  Sum_probs=203.2

Q ss_pred             hhhhhccCCCCCCHHHH-HHHcCCHHHHHHHHhccCccccccCCCCCChHHHHHHH-cCcHHHHHHHHhcCCCCc-----
Q 011183           19 SSVVNEVNELGETALFT-AADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAV-QGHHAIVQVLLDHDPSLS-----   91 (491)
Q Consensus        19 ~~~l~~~~~~g~T~Lh~-Aa~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~-~g~~~iv~~Ll~~~~~l~-----   91 (491)
                      ++.++..|-+|.+|+|. |...|++|+|++|+++|++  ++.++..|.||+|+|+. .++.|++++|+++|++..     
T Consensus        61 ~~~~~~~n~~~~~~~~~~~s~n~~lElvk~LI~~GAd--vN~~~n~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~  138 (631)
T PHA02792         61 LSSVDYKNINDFDIFEYLCSDNIDIELLKLLISKGLE--INSIKNGINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQY  138 (631)
T ss_pred             HhCCCcCccCCccHHHHHHHhcccHHHHHHHHHcCCC--cccccCCCCcceeEeecCCCChHHHHHHHHCCCCccccccc
Confidence            55677889999999975 5557899999999999887  56778889999999966 699999999999997621     


Q ss_pred             ------------------------------ccCCCCCCCHHHHHHHcC-------CHHHHHHHHhcCCCcccccCCCCCc
Q 011183           92 ------------------------------QTTGPSNATPLVSAATRG-------HTAVVNELLSKDGGLLEISRSNGKN  134 (491)
Q Consensus        92 ------------------------------~~~~~~g~tpL~~A~~~g-------~~~~v~~LL~~~~~~~~~~d~~g~t  134 (491)
                                                    +..|..|.||||+|+..+       +.|+++.|+++ ++.++..|..|.|
T Consensus       139 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~-g~~~~~~d~~g~t  217 (631)
T PHA02792        139 GYKIIIEQITRAEYYNWDDELDDYDYDYTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISH-EKEMRYYTYREHT  217 (631)
T ss_pred             CcchhhhhcccccccchhhhccccccccccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhC-CCCcCccCCCCCh
Confidence                                          134556999999999999       89999999998 5667888999999


Q ss_pred             HHHHHHHcC--CHHHHHHHHhCCccc---------------------cc-------------------------------
Q 011183          135 ALHFAARQG--HVDVVKALLSKDPQL---------------------AR-------------------------------  160 (491)
Q Consensus       135 pLh~A~~~g--~~~iv~~Ll~~~~~~---------------------~~-------------------------------  160 (491)
                      |||+|+.+.  +.|+++.|++..-+-                     .+                               
T Consensus       218 ~l~~~~~~~~i~~ei~~~L~~~~~~~~~~~~~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~  297 (631)
T PHA02792        218 TLYYYVDKCDIKREIFDALFDSNYSGNELMNILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISS  297 (631)
T ss_pred             HHHHHHHcccchHHHHHHHHhccccccchHhHHHHHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHH
Confidence            999999988  778888777531100                     00                               


Q ss_pred             ------------------------------------ccCCCCCCHHHHHHhCCCHHHHHHHHhcCcccccCCCCCC--Ch
Q 011183          161 ------------------------------------RTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFG--NT  202 (491)
Q Consensus       161 ------------------------------------~~d~~g~t~Lh~Aa~~~~~~iv~~Ll~~~~~~~~~~d~~G--~T  202 (491)
                                                          .......+++|.|+..++.+++++|+++|++ ++.+|.+|  .|
T Consensus       298 ~~~~~~~~~q~~l~~Yl~~~~v~ieiIK~LId~Ga~~~r~~~~n~~~~Aa~~gn~eIVelLIs~GAD-IN~kD~~g~~~T  376 (631)
T PHA02792        298 ILKRYTDSIQDLLSEYVSYHTVYINVIKCMIDEGATLYRFKHINKYFQKFDNRDPKVVEYILKNGNV-VVEDDDNIINIM  376 (631)
T ss_pred             HHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHCCCccccCCcchHHHHHHHcCCHHHHHHHHHcCCc-hhhhcCCCCChh
Confidence                                                0011245678899999999999999999999 67778775  69


Q ss_pred             HHHHHHHcCcHH---HHHHHhcCCCCCcccccCCCCCHHHHHhhCCCchhhHHHHHHHHHcCccccccCCCchHHHHHHH
Q 011183          203 ALHVATRKKRTE---IVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVRANELNQPRDELRKTV  279 (491)
Q Consensus       203 pLh~A~~~~~~~---iv~~Ll~~~g~~~~~~d~~G~t~L~~A~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~l~~~~  279 (491)
                      |||.|......+   ++++|++ .|+|+|.+|..|.||||+|+..++.    ++.++|++.|+..+.....+.+++..+.
T Consensus       377 pLh~A~~n~~~~v~~IlklLIs-~GADIN~kD~~G~TPLh~Aa~~~n~----eivelLLs~GADIN~kD~~G~TpL~~A~  451 (631)
T PHA02792        377 PLFPTLSIHESDVLSILKLCKP-YIDDINKIDKHGRSILYYCIESHSV----SLVEWLIDNGADINITTKYGSTCIGICV  451 (631)
T ss_pred             HHHHHHHhccHhHHHHHHHHHh-cCCccccccccCcchHHHHHHcCCH----HHHHHHHHCCCCCCCcCCCCCCHHHHHH
Confidence            999988776543   5787888 7999999999999999999986654    4889999999988777777777776654


Q ss_pred             H
Q 011183          280 T  280 (491)
Q Consensus       280 ~  280 (491)
                      .
T Consensus       452 ~  452 (631)
T PHA02792        452 I  452 (631)
T ss_pred             H
Confidence            3

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.93  E-value=2.2e-23  Score=228.33  Aligned_cols=223  Identities=24%  Similarity=0.244  Sum_probs=174.0

Q ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhccCccccccCCCCCChHHH-HHHHcCcHHHHHHHHhcCCCCcccCCCCCCCHHHHH
Q 011183           27 ELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLH-IAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSA  105 (491)
Q Consensus        27 ~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh-~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A  105 (491)
                      ..++++++.|++.|+.+.|+.+++.+...+++..|..|+|||| .|+.+++.+++++|++++.     .+..|.||||.|
T Consensus        15 ~~~~~~~l~A~~~g~~~~v~~lL~~~~~~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~-----~~~~G~T~Lh~A   89 (743)
T TIGR00870        15 SDEEKAFLPAAERGDLASVYRDLEEPKKLNINCPDRLGRSALFVAAIENENLELTELLLNLSC-----RGAVGDTLLHAI   89 (743)
T ss_pred             CHHHHHHHHHHHcCCHHHHHHHhccccccCCCCcCccchhHHHHHHHhcChHHHHHHHHhCCC-----CCCcChHHHHHH
Confidence            3567899999999999999999997445557888999999999 8999999999999999886     567899999999


Q ss_pred             HHcC---CHHHHHHHHhcCCCc---------ccccCCCCCcHHHHHHHcCCHHHHHHHHhCCccccccc-----------
Q 011183          106 ATRG---HTAVVNELLSKDGGL---------LEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRT-----------  162 (491)
Q Consensus       106 ~~~g---~~~~v~~LL~~~~~~---------~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~-----------  162 (491)
                      +..+   ..+++..+.......         ....+..|.||||+|+..|+.++++.|+++|+++....           
T Consensus        90 ~~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~  169 (743)
T TIGR00870        90 SLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGV  169 (743)
T ss_pred             HhccHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCC
Confidence            8732   223334444332210         01123469999999999999999999999998874221           


Q ss_pred             --CCCCCCHHHHHHhCCCHHHHHHHHhcCcccccCCCCCCChHHHHHHHcC---------cHHHHHHHhcC--CCCCc--
Q 011183          163 --DKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKK---------RTEIVTELLSL--PDTNV--  227 (491)
Q Consensus       163 --d~~g~t~Lh~Aa~~~~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~~---------~~~iv~~Ll~~--~g~~~--  227 (491)
                        ...|+||||.|+..++.+++++|++.|++ ++.+|..|+||||+|+..+         ...+.++++..  .+.+.  
T Consensus       170 ~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gad-in~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~e  248 (743)
T TIGR00870       170 DSFYHGESPLNAAACLGSPSIVALLSEDPAD-ILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKE  248 (743)
T ss_pred             CcccccccHHHHHHHhCCHHHHHHHhcCCcc-hhhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHh
Confidence              13589999999999999999999999998 7889999999999999986         22344555441  22333  


Q ss_pred             --ccccCCCCCHHHHHhhCCCchhhHHHHHHHHH
Q 011183          228 --NALTRDHKTALDIAEGLPSSEEASEIKDCLAR  259 (491)
Q Consensus       228 --~~~d~~G~t~L~~A~~~~~~~~~~~i~~~L~~  259 (491)
                        +..|++|.||||+|+..++.+    +.+.+++
T Consensus       249 l~~i~N~~g~TPL~~A~~~g~~~----l~~lLL~  278 (743)
T TIGR00870       249 LEVILNHQGLTPLKLAAKEGRIV----LFRLKLA  278 (743)
T ss_pred             hhhhcCCCCCCchhhhhhcCCcc----HHHHHHH
Confidence              778999999999999988766    4444444

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.92  E-value=4.2e-25  Score=192.12  Aligned_cols=215  Identities=25%  Similarity=0.308  Sum_probs=195.8

Q ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCCHHHH
Q 011183           25 VNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVS  104 (491)
Q Consensus        25 ~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~  104 (491)
                      ++..|+.-+-.+.+.|+.+++..++...++. ....+.+|.+++|.|+-+|+.+.++.++.++... +..+--+++|+.+
T Consensus        58 ~~~lge~~~~~~~~s~nsd~~v~s~~~~~~~-~~~t~p~g~~~~~v~ap~~s~~k~sttltN~~rg-nevs~~p~s~~sl  135 (296)
T KOG0502|consen   58 RNALGESLLTVAVRSGNSDVAVQSAQLDPDA-IDETDPEGWSALLVAAPCGSVDKVSTTLTNGARG-NEVSLMPWSPLSL  135 (296)
T ss_pred             HHhcCCcccchhhhcCCcHHHHHhhccCCCC-CCCCCchhhhhhhhcCCCCCcceeeeeecccccC-CccccccCChhhH
Confidence            4667888888999999999999998876655 4556777999999999999999999999998886 6777889999999


Q ss_pred             HHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCCHHHHHHhCCCHHHHHH
Q 011183          105 AATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKL  184 (491)
Q Consensus       105 A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~~~~iv~~  184 (491)
                      ++.+.+.+.+..+.+.   .++..|+.|.|||.+|+..|+.++|++|++.|+++ ....+...++|.+|++.|..++|++
T Consensus       136 sVhql~L~~~~~~~~n---~VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp-~~lgk~resALsLAt~ggytdiV~l  211 (296)
T KOG0502|consen  136 SVHQLHLDVVDLLVNN---KVNACDEFGFTPLIWAAAKGHIPVVQFLLNSGADP-DALGKYRESALSLATRGGYTDIVEL  211 (296)
T ss_pred             HHHHHHHHHHHHHhhc---cccCccccCchHhHHHHhcCchHHHHHHHHcCCCh-hhhhhhhhhhHhHHhcCChHHHHHH
Confidence            9999888888776644   57889999999999999999999999999999997 7778888999999999999999999


Q ss_pred             HHhcCcccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCc
Q 011183          185 LLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSS  247 (491)
Q Consensus       185 Ll~~~~~~~~~~d~~G~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~d~~G~t~L~~A~~~~~~  247 (491)
                      |++++.+ +|.-|.+|.|||-+|++.++.++++.|+. .|++++..+..|.+++++|...++.
T Consensus       212 LL~r~vd-VNvyDwNGgTpLlyAvrgnhvkcve~Ll~-sGAd~t~e~dsGy~~mdlAValGyr  272 (296)
T KOG0502|consen  212 LLTREVD-VNVYDWNGGTPLLYAVRGNHVKCVESLLN-SGADVTQEDDSGYWIMDLAVALGYR  272 (296)
T ss_pred             HHhcCCC-cceeccCCCceeeeeecCChHHHHHHHHh-cCCCcccccccCCcHHHHHHHhhhH
Confidence            9999999 89999999999999999999999999999 8999999999999999999998775

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.92  E-value=7.3e-24  Score=233.49  Aligned_cols=177  Identities=24%  Similarity=0.250  Sum_probs=156.3

Q ss_pred             CCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHH
Q 011183           60 KNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFA  139 (491)
Q Consensus        60 ~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A  139 (491)
                      .+..+.++||.||..|+.++++.|+++|+++ +..|..|.||||+|+..|+.++++.|+++ +.+++..|.+|.||||.|
T Consensus       521 ~~~~~~~~L~~Aa~~g~~~~l~~Ll~~G~d~-n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~-gadin~~d~~G~TpL~~A  598 (823)
T PLN03192        521 DDPNMASNLLTVASTGNAALLEELLKAKLDP-DIGDSKGRTPLHIAASKGYEDCVLVLLKH-ACNVHIRDANGNTALWNA  598 (823)
T ss_pred             CCccchhHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcChHHHHHHHHhc-CCCCCCcCCCCCCHHHHH
Confidence            4555778999999999999999999999987 67888999999999999999999999987 667888999999999999


Q ss_pred             HHcCCHHHHHHHHhCCcccccccCCCCCCHHHHHHhCCCHHHHHHHHhcCcccccCCCCCCChHHHHHHHcCcHHHHHHH
Q 011183          140 ARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTEL  219 (491)
Q Consensus       140 ~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~~~~~iv~~L  219 (491)
                      +..|+.++++.|++.+...   ....|.++||.|+.+|+.++++.|+++|++ +|.+|.+|+||||+|+..|+.+++++|
T Consensus       599 ~~~g~~~iv~~L~~~~~~~---~~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gad-in~~d~~G~TpLh~A~~~g~~~iv~~L  674 (823)
T PLN03192        599 ISAKHHKIFRILYHFASIS---DPHAAGDLLCTAAKRNDLTAMKELLKQGLN-VDSEDHQGATALQVAMAEDHVDMVRLL  674 (823)
T ss_pred             HHhCCHHHHHHHHhcCccc---CcccCchHHHHHHHhCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHCCcHHHHHHH
Confidence            9999999999999876543   235677899999999999999999999998 788999999999999999999999999


Q ss_pred             hcCCCCCcccccCCC-CCHHHHHhh
Q 011183          220 LSLPDTNVNALTRDH-KTALDIAEG  243 (491)
Q Consensus       220 l~~~g~~~~~~d~~G-~t~L~~A~~  243 (491)
                      ++ .|++++..|..| .||++++..
T Consensus       675 l~-~GAdv~~~~~~g~~t~~~l~~~  698 (823)
T PLN03192        675 IM-NGADVDKANTDDDFSPTELREL  698 (823)
T ss_pred             HH-cCCCCCCCCCCCCCCHHHHHHH
Confidence            98 899999999988 899888755

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.92  E-value=9.9e-25  Score=220.14  Aligned_cols=222  Identities=32%  Similarity=0.350  Sum_probs=196.8

Q ss_pred             chhhhhccCCCCCCHHHHHHHcCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCC
Q 011183           18 RSSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPS   97 (491)
Q Consensus        18 ~~~~l~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~   97 (491)
                      ++...|..|.+|.|+||.|+.+|+.++++.|+++.+.  +...+..|.+|||+|+..|+.++++.++.++.. .+..+.+
T Consensus        38 rsds~n~qd~~gfTalhha~Lng~~~is~llle~ea~--ldl~d~kg~~plhlaaw~g~~e~vkmll~q~d~-~na~~~e  114 (854)
T KOG0507|consen   38 RSDSHNLQDYSGFTLLHHAVLNGQNQISKLLLDYEAL--LDLCDTKGILPLHLAAWNGNLEIVKMLLLQTDI-LNAVNIE  114 (854)
T ss_pred             CCccccccCccchhHHHHHHhcCchHHHHHHhcchhh--hhhhhccCcceEEehhhcCcchHHHHHHhcccC-CCccccc
Confidence            4566788999999999999999999999999997655  566778999999999999999999999999944 4788899


Q ss_pred             CCCHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhCCccc-------ccccCCCCCCHH
Q 011183           98 NATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQL-------ARRTDKKGQTAL  170 (491)
Q Consensus        98 g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~-------~~~~d~~g~t~L  170 (491)
                      |.||||.|+++||.+++.+|+.+ +++..+.+.++.|+|.+|++.|..++++.|+...-..       ...++-.+.+||
T Consensus       115 ~~tplhlaaqhgh~dvv~~Ll~~-~adp~i~nns~~t~ldlA~qfgr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~pl  193 (854)
T KOG0507|consen  115 NETPLHLAAQHGHLEVVFYLLKK-NADPFIRNNSKETVLDLASRFGRAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPL  193 (854)
T ss_pred             CcCccchhhhhcchHHHHHHHhc-CCCccccCcccccHHHHHHHhhhhHHHHHHhhhccchhhcccCCCCCCCCCCcCCc
Confidence            99999999999999999999988 6677889999999999999999999999999873211       123344677899


Q ss_pred             HHHHhCCCHHHHHHHHhcCcccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCC
Q 011183          171 HMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPS  246 (491)
Q Consensus       171 h~Aa~~~~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~d~~G~t~L~~A~~~~~  246 (491)
                      |+|+++|+.++++.|++.|-+ +|.....| |+||.|+..|..++|++|++ .|++.+++|.+|+|+|++......
T Consensus       194 Hlaakngh~~~~~~ll~ag~d-in~~t~~g-talheaalcgk~evvr~ll~-~gin~h~~n~~~qtaldil~d~~~  266 (854)
T KOG0507|consen  194 HLAAKNGHVECMQALLEAGFD-INYTTEDG-TALHEAALCGKAEVVRFLLE-IGINTHIKNQHGQTALDIIIDLQE  266 (854)
T ss_pred             chhhhcchHHHHHHHHhcCCC-cccccccc-hhhhhHhhcCcchhhhHHHh-hccccccccccchHHHHHHHhcch
Confidence            999999999999999999999 67666654 89999999999999999999 899999999999999999887654

>PF13962 PGG: Domain of unknown function

Probab=99.92  E-value=9.2e-25  Score=180.20  Aligned_cols=107  Identities=36%  Similarity=0.592  Sum_probs=90.4

Q ss_pred             hhhcccccchhhhHHHHHHHHHHhhccCCCCCCC----CCcchhcccc-chhHHHHHhhHHHHHHHHHHHHHHHHhccch
Q 011183          313 EGINNATNSVTVVAVLFATVAFASIFTVPGGDDD----NGKAVVVRRA-SFKIFFIFNAIALFTSLAVVVVQITLVRGET  387 (491)
Q Consensus       313 e~~~~~~~~~~~~a~liatv~f~a~~~~Pgg~~~----~g~~~~~~~~-~f~~f~~~~~~a~~~S~~~~~~~~~~~~~~~  387 (491)
                      |+++++++++++||+|||||||||+||||||+++    .|+|++.+++ .|++|+++|++||++|+++++++++......
T Consensus         2 ~~~~~~~~~llVvAtLIATvtF~A~~tpPGG~~~~~~~~G~~il~~~~~~f~~F~~~nt~af~~S~~~i~~l~~~~~~~~   81 (113)
T PF13962_consen    2 KWLEDTRNSLLVVATLIATVTFQAAFTPPGGYWQDDDDAGTPILAKKPSAFKAFLISNTIAFFSSLAAIFLLISGLDDFR   81 (113)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccccCCCCchhccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence            5677889999999999999999999999999954    5999998877 8999999999999999999998884221112


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011183          388 KAEKRVVEVINKLMWLASVCTSVAFIASSYIV  419 (491)
Q Consensus       388 ~~~~~~~~~~~~~~~~~~~~~~~af~~~~~~~  419 (491)
                      +..+..+.....+||+++.+|++||++|+|+|
T Consensus        82 ~~~~~~~~~~~~~~~~a~~~~~~Af~~g~~~v  113 (113)
T PF13962_consen   82 RFLRRYLLIASVLMWIALISMMVAFAAGIYLV  113 (113)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            22334566778899999999999999999875

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.91  E-value=4.5e-25  Score=191.90  Aligned_cols=221  Identities=25%  Similarity=0.348  Sum_probs=194.9

Q ss_pred             hhHHHHHhhchhhhhccCCCCCCHHHHHHHcCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhcCC
Q 011183            9 EFDTEVAEIRSSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDP   88 (491)
Q Consensus         9 ~~~~~~~~~~~~~l~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~   88 (491)
                      +........++.-++..+.+|++++|.|+-.|+.+.+..+|..++.  .+..+..+.+|+.+++...+.+.+..+.+.  
T Consensus        76 d~~v~s~~~~~~~~~~t~p~g~~~~~v~ap~~s~~k~sttltN~~r--gnevs~~p~s~~slsVhql~L~~~~~~~~n--  151 (296)
T KOG0502|consen   76 DVAVQSAQLDPDAIDETDPEGWSALLVAAPCGSVDKVSTTLTNGAR--GNEVSLMPWSPLSLSVHQLHLDVVDLLVNN--  151 (296)
T ss_pred             HHHHHhhccCCCCCCCCCchhhhhhhhcCCCCCcceeeeeeccccc--CCccccccCChhhHHHHHHHHHHHHHHhhc--
Confidence            3344445566777788888999999999999999999999998766  466777899999999999999988887664  


Q ss_pred             CCcccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCC
Q 011183           89 SLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQT  168 (491)
Q Consensus        89 ~l~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t  168 (491)
                       ..+..|+.|.|||.+|+..|+++++++||+. +++++...+...++|.+|++.|..++|+.|+++++++ +..|-+|-|
T Consensus       152 -~VN~~De~GfTpLiWAaa~G~i~vV~fLL~~-GAdp~~lgk~resALsLAt~ggytdiV~lLL~r~vdV-NvyDwNGgT  228 (296)
T KOG0502|consen  152 -KVNACDEFGFTPLIWAAAKGHIPVVQFLLNS-GADPDALGKYRESALSLATRGGYTDIVELLLTREVDV-NVYDWNGGT  228 (296)
T ss_pred             -cccCccccCchHhHHHHhcCchHHHHHHHHc-CCChhhhhhhhhhhHhHHhcCChHHHHHHHHhcCCCc-ceeccCCCc
Confidence             3467899999999999999999999999987 7778888899999999999999999999999999998 778999999


Q ss_pred             HHHHHHhCCCHHHHHHHHhcCcccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHH
Q 011183          169 ALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALD  239 (491)
Q Consensus       169 ~Lh~Aa~~~~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~d~~G~t~L~  239 (491)
                      ||-+|++.++.++++.|++.|++ ++..|..|++++.+|+..|+. +|+..++ .-++.+.+|+..++|+|
T Consensus       229 pLlyAvrgnhvkcve~Ll~sGAd-~t~e~dsGy~~mdlAValGyr-~Vqqvie-~h~lkl~Q~~~~~~~~~  296 (296)
T KOG0502|consen  229 PLLYAVRGNHVKCVESLLNSGAD-VTQEDDSGYWIMDLAVALGYR-IVQQVIE-KHALKLCQDSEKRTPLH  296 (296)
T ss_pred             eeeeeecCChHHHHHHHHhcCCC-cccccccCCcHHHHHHHhhhH-HHHHHHH-HHHHHHhhcccCCCCCC
Confidence            99999999999999999999999 888999999999999999988 8888887 56667777777777764

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.91  E-value=1.9e-23  Score=230.20  Aligned_cols=179  Identities=24%  Similarity=0.302  Sum_probs=161.2

Q ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCCHHHH
Q 011183           25 VNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVS  104 (491)
Q Consensus        25 ~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~  104 (491)
                      .+.++.++||.||..|+.++++.|++.|.+  ++..|..|.||||+|+..|+.+++++|+++|+++ +..|.+|.||||+
T Consensus       521 ~~~~~~~~L~~Aa~~g~~~~l~~Ll~~G~d--~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadi-n~~d~~G~TpL~~  597 (823)
T PLN03192        521 DDPNMASNLLTVASTGNAALLEELLKAKLD--PDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNV-HIRDANGNTALWN  597 (823)
T ss_pred             CCccchhHHHHHHHcCCHHHHHHHHHCCCC--CCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCC-CCcCCCCCCHHHH
Confidence            344678999999999999999999998877  5778999999999999999999999999999997 7789999999999


Q ss_pred             HHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCCHHHHHHhCCCHHHHHH
Q 011183          105 AATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKL  184 (491)
Q Consensus       105 A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~~~~iv~~  184 (491)
                      |+..|+.++++.|++... ..  ....|.++||.|+..|+.++++.|+++|+++ +..|.+|+||||+|+..|+.+++++
T Consensus       598 A~~~g~~~iv~~L~~~~~-~~--~~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadi-n~~d~~G~TpLh~A~~~g~~~iv~~  673 (823)
T PLN03192        598 AISAKHHKIFRILYHFAS-IS--DPHAAGDLLCTAAKRNDLTAMKELLKQGLNV-DSEDHQGATALQVAMAEDHVDMVRL  673 (823)
T ss_pred             HHHhCCHHHHHHHHhcCc-cc--CcccCchHHHHHHHhCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHCCcHHHHHH
Confidence            999999999999997633 22  2456789999999999999999999999997 7889999999999999999999999


Q ss_pred             HHhcCcccccCCCCCC-ChHHHHHHHcC
Q 011183          185 LLEADAAIVMLPDKFG-NTALHVATRKK  211 (491)
Q Consensus       185 Ll~~~~~~~~~~d~~G-~TpLh~A~~~~  211 (491)
                      |+++|++ ++..|.+| .||++++....
T Consensus       674 Ll~~GAd-v~~~~~~g~~t~~~l~~~~~  700 (823)
T PLN03192        674 LIMNGAD-VDKANTDDDFSPTELRELLQ  700 (823)
T ss_pred             HHHcCCC-CCCCCCCCCCCHHHHHHHHH
Confidence            9999999 77788888 99999886543

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.90  E-value=3.8e-23  Score=226.47  Aligned_cols=216  Identities=23%  Similarity=0.266  Sum_probs=165.5

Q ss_pred             hhhhhccCCCCCCHHH-HHHHcCCHHHHHHHHhccCccccccCCCCCChHHHHHHHc---CcHHHHHHHHhcCCC-----
Q 011183           19 SSVVNEVNELGETALF-TAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQ---GHHAIVQVLLDHDPS-----   89 (491)
Q Consensus        19 ~~~l~~~~~~g~T~Lh-~Aa~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~---g~~~iv~~Ll~~~~~-----   89 (491)
                      +.++|..|..|.|||| .|+..++.++++.|++.+.      .+..|.||||.|+..   +..++++.+.+.++.     
T Consensus        42 ~~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~------~~~~G~T~Lh~A~~~~~~~v~~ll~~l~~~~~~~~~~~  115 (743)
T TIGR00870        42 KLNINCPDRLGRSALFVAAIENENLELTELLLNLSC------RGAVGDTLLHAISLEYVDAVEAILLHLLAAFRKSGPLE  115 (743)
T ss_pred             ccCCCCcCccchhHHHHHHHhcChHHHHHHHHhCCC------CCCcChHHHHHHHhccHHHHHHHHHHHhhcccccCchh
Confidence            6788999999999999 8999999999999999765      567899999999872   223344444444432     


Q ss_pred             C----cccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccC--------------CCCCcHHHHHHHcCCHHHHHHH
Q 011183           90 L----SQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISR--------------SNGKNALHFAARQGHVDVVKAL  151 (491)
Q Consensus        90 l----~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~d--------------~~g~tpLh~A~~~g~~~iv~~L  151 (491)
                      .    ....+..|.||||+|+..|+.++++.|+++ +++++..+              ..|.||||.|+..|+.++++.|
T Consensus       116 ~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~-GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lL  194 (743)
T TIGR00870       116 LANDQYTSEFTPGITALHLAAHRQNYEIVKLLLER-GASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALL  194 (743)
T ss_pred             hhccccccccCCCCcHHHHHHHhCCHHHHHHHHhC-CCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHH
Confidence            1    112235699999999999999999999998 45554332              3589999999999999999999


Q ss_pred             HhCCcccccccCCCCCCHHHHHHhCCC---------HHHHHHHHhcCccc------ccCCCCCCChHHHHHHHcCcHHHH
Q 011183          152 LSKDPQLARRTDKKGQTALHMAVKGQS---------CEVVKLLLEADAAI------VMLPDKFGNTALHVATRKKRTEIV  216 (491)
Q Consensus       152 l~~~~~~~~~~d~~g~t~Lh~Aa~~~~---------~~iv~~Ll~~~~~~------~~~~d~~G~TpLh~A~~~~~~~iv  216 (491)
                      +++++++ +..|..|+||||+|+..+.         ..+.+++++.++..      .+..|.+|.||||+|+..|+.+++
T Consensus       195 l~~gadi-n~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL~~A~~~g~~~l~  273 (743)
T TIGR00870       195 SEDPADI-LTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLAAKEGRIVLF  273 (743)
T ss_pred             hcCCcch-hhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhhhcCCCCCCchhhhhhcCCccHH
Confidence            9999887 7789999999999998862         23455555554431      256789999999999999999999


Q ss_pred             HHHhcCCCCCcccccCCCCCHHHHHhh
Q 011183          217 TELLSLPDTNVNALTRDHKTALDIAEG  243 (491)
Q Consensus       217 ~~Ll~~~g~~~~~~d~~G~t~L~~A~~  243 (491)
                      +.|++ .+.+..........|.+.+..
T Consensus       274 ~lLL~-~~~~~kk~~a~~~~~~~~~~~  299 (743)
T TIGR00870       274 RLKLA-IKYKQKKFVAWPNGQQLLSLY  299 (743)
T ss_pred             HHHHH-HHHhcceeeccCcchHhHhhh
Confidence            99998 344444444555556655543

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.88  E-value=5.7e-22  Score=200.37  Aligned_cols=237  Identities=27%  Similarity=0.334  Sum_probs=200.7

Q ss_pred             CCHHHHHHHcCCHHHHHHHHhccC-----------ccccccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCC
Q 011183           30 ETALFTAADKGHIEVVNELLKYST-----------KEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSN   98 (491)
Q Consensus        30 ~T~Lh~Aa~~g~~~~v~~Ll~~~~-----------~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g   98 (491)
                      .+-|..|++.|+.+.+..||+...           ....+.+|.+|.|+||.|+.+|+.+++++|+++.+-+ ...|..|
T Consensus         4 ~qel~~a~ka~d~~tva~ll~~~~~r~~~l~~~trsds~n~qd~~gfTalhha~Lng~~~is~llle~ea~l-dl~d~kg   82 (854)
T KOG0507|consen    4 KQELIDACKAGDYDTVALLLSSKKGRSGLLFFTTRSDSHNLQDYSGFTLLHHAVLNGQNQISKLLLDYEALL-DLCDTKG   82 (854)
T ss_pred             hhhHHHhhhcccHHHHHHhccCCCCCCCCCCCCCCCccccccCccchhHHHHHHhcCchHHHHHHhcchhhh-hhhhccC
Confidence            355778999999999999998632           2346778889999999999999999999999998877 5667899


Q ss_pred             CCHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCCHHHHHHhCCC
Q 011183           99 ATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQS  178 (491)
Q Consensus        99 ~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~~  178 (491)
                      .+|||+|+..|+.++++.+|.++ +..+.....|.||||.|++.|+.+++.+|++++.+. -.+|+.+.|+|.+|++.|.
T Consensus        83 ~~plhlaaw~g~~e~vkmll~q~-d~~na~~~e~~tplhlaaqhgh~dvv~~Ll~~~adp-~i~nns~~t~ldlA~qfgr  160 (854)
T KOG0507|consen   83 ILPLHLAAWNGNLEIVKMLLLQT-DILNAVNIENETPLHLAAQHGHLEVVFYLLKKNADP-FIRNNSKETVLDLASRFGR  160 (854)
T ss_pred             cceEEehhhcCcchHHHHHHhcc-cCCCcccccCcCccchhhhhcchHHHHHHHhcCCCc-cccCcccccHHHHHHHhhh
Confidence            99999999999999999999885 667888999999999999999999999999999997 5678999999999999999


Q ss_pred             HHHHHHHHhcCccc-------ccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCchhhH
Q 011183          179 CEVVKLLLEADAAI-------VMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEAS  251 (491)
Q Consensus       179 ~~iv~~Ll~~~~~~-------~~~~d~~G~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~d~~G~t~L~~A~~~~~~~~~~  251 (491)
                      .++++.|+...-..       ...++-.+-+|||+|+++|+.++++.|++ .|.++|...+.| |+||-|+..+..+   
T Consensus       161 ~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakngh~~~~~~ll~-ag~din~~t~~g-talheaalcgk~e---  235 (854)
T KOG0507|consen  161 AEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKNGHVECMQALLE-AGFDINYTTEDG-TALHEAALCGKAE---  235 (854)
T ss_pred             hHHHHHHhhhccchhhcccCCCCCCCCCCcCCcchhhhcchHHHHHHHHh-cCCCcccccccc-hhhhhHhhcCcch---
Confidence            99999999862211       12345668899999999999999999999 899999887776 8999998877654   


Q ss_pred             HHHHHHHHcCccccccCCCchHHH
Q 011183          252 EIKDCLARCGAVRANELNQPRDEL  275 (491)
Q Consensus       252 ~i~~~L~~~ga~~~~~~~~~~~~l  275 (491)
                       ++..|++.|..........+..+
T Consensus       236 -vvr~ll~~gin~h~~n~~~qtal  258 (854)
T KOG0507|consen  236 -VVRFLLEIGINTHIKNQHGQTAL  258 (854)
T ss_pred             -hhhHHHhhccccccccccchHHH
Confidence             67777777766555444444433

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.86  E-value=7e-22  Score=193.45  Aligned_cols=205  Identities=27%  Similarity=0.383  Sum_probs=164.8

Q ss_pred             HHHHHHHcCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCCH
Q 011183           32 ALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHT  111 (491)
Q Consensus        32 ~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~~g~~  111 (491)
                      .+.-|+..|+.+-|+.|+..+.+  .+..|.+|.|+||.+|...+.+||++|+++|+++ +..|..|+||||.|+..||.
T Consensus        43 ~~l~A~~~~d~~ev~~ll~~ga~--~~~~n~DglTalhq~~id~~~e~v~~l~e~ga~V-n~~d~e~wtPlhaaascg~~  119 (527)
T KOG0505|consen   43 VFLEACSRGDLEEVRKLLNRGAS--PNLCNVDGLTALHQACIDDNLEMVKFLVENGANV-NAQDNEGWTPLHAAASCGYL  119 (527)
T ss_pred             HHHhccccccHHHHHHHhccCCC--ccccCCccchhHHHHHhcccHHHHHHHHHhcCCc-cccccccCCcchhhcccccH
Confidence            46677788899999999987765  4677888999999999999999999999999988 67888899999999999999


Q ss_pred             HHHHHHHhcCCCcccccCCCCCcHHHHHHHcCC--------------------------HHHHHHHHhCCcccccccCCC
Q 011183          112 AVVNELLSKDGGLLEISRSNGKNALHFAARQGH--------------------------VDVVKALLSKDPQLARRTDKK  165 (491)
Q Consensus       112 ~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~--------------------------~~iv~~Ll~~~~~~~~~~d~~  165 (491)
                      .++++|+.. ++.....+.+|..|+..+...-.                          .+-+...+..|... ...+..
T Consensus       120 ~i~~~li~~-gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~-d~~~~r  197 (527)
T KOG0505|consen  120 NIVEYLIQH-GANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAEL-DARHAR  197 (527)
T ss_pred             HHHHHHHHh-hhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccc-cccccc
Confidence            999999887 44444455555555444321111                          11122333345544 445556


Q ss_pred             CCCHHHHHHhCCCHHHHHHHHhcCcccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhh
Q 011183          166 GQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEG  243 (491)
Q Consensus       166 g~t~Lh~Aa~~~~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~d~~G~t~L~~A~~  243 (491)
                      |.|.||+|+.+|..++.++|+++|.+ ++.+|.+|+||||.|+.-|..++++.|++ +|++++.....|.||+++|..
T Consensus       198 G~T~lHvAaa~Gy~e~~~lLl~ag~~-~~~~D~dgWtPlHAAA~Wg~~~~~elL~~-~ga~~d~~t~~g~~p~dv~de  273 (527)
T KOG0505|consen  198 GATALHVAAANGYTEVAALLLQAGYS-VNIKDYDGWTPLHAAAHWGQEDACELLVE-HGADMDAKTKMGETPLDVADE  273 (527)
T ss_pred             cchHHHHHHhhhHHHHHHHHHHhccC-cccccccCCCcccHHHHhhhHhHHHHHHH-hhcccchhhhcCCCCccchhh
Confidence            99999999999999999999999999 88999999999999999999999998888 899999999999999999875

>PHA02741 hypothetical protein; Provisional

Probab=99.86  E-value=1e-20  Score=168.90  Aligned_cols=138  Identities=20%  Similarity=0.266  Sum_probs=114.7

Q ss_pred             hhhhhccCCCCCCHHHHHHHcCCHHHHHHHHhcc----CccccccCCCCCChHHHHHHHcCc----HHHHHHHHhcCCCC
Q 011183           19 SSVVNEVNELGETALFTAADKGHIEVVNELLKYS----TKEGLTRKNRSGFDPLHIAAVQGH----HAIVQVLLDHDPSL   90 (491)
Q Consensus        19 ~~~l~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~----~~~~l~~~~~~g~TpLh~A~~~g~----~~iv~~Ll~~~~~l   90 (491)
                      ..+++.+|..|.||||+|++.|+.++++.|+...    ...+++.+|..|.||||+|+..|+    .+++++|++.|+++
T Consensus        11 ~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadi   90 (169)
T PHA02741         11 EEMIAEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADI   90 (169)
T ss_pred             HHHhhccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCC
Confidence            3467888999999999999999999999986532    123467888899999999999998    58889999999887


Q ss_pred             cccCC-CCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhCCcc
Q 011183           91 SQTTG-PSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQ  157 (491)
Q Consensus        91 ~~~~~-~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~  157 (491)
                       +..+ ..|.||||+|+..++.+++++|+...+.+++..|.+|.||||.|+..|+.++++.|++.+..
T Consensus        91 -n~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~~~  157 (169)
T PHA02741         91 -NAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDNEDVAMMQILREIVAT  157 (169)
T ss_pred             -CCCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHCCCHHHHHHHHHHHHH
Confidence             4555 48999999999999999999998765667788888999999999999999999998886544

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.85  E-value=4.4e-21  Score=178.87  Aligned_cols=159  Identities=29%  Similarity=0.317  Sum_probs=131.9

Q ss_pred             ccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHc-----CCHHHHHHHHhCCcccccccCCCC
Q 011183           92 QTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQ-----GHVDVVKALLSKDPQLARRTDKKG  166 (491)
Q Consensus        92 ~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~-----g~~~iv~~Ll~~~~~~~~~~d~~g  166 (491)
                      +..|.+|.|+||||+.++++++|+.||+.+-.+++..++-|.||+++++..     .+.++|..|.+.|. ++.+-...|
T Consensus       262 NlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mgn-VNaKAsQ~g  340 (452)
T KOG0514|consen  262 NLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMGD-VNAKASQHG  340 (452)
T ss_pred             hhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhccC-cchhhhhhc
Confidence            456778888888888888888888888887778888888888888887743     45778888887654 334456689


Q ss_pred             CCHHHHHHhCCCHHHHHHHHhcCcccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCC
Q 011183          167 QTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPS  246 (491)
Q Consensus       167 ~t~Lh~Aa~~~~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~d~~G~t~L~~A~~~~~  246 (491)
                      +|+|.+|+.+|+.++++.|+..|++ +|.+|.+|.|+|+.|+..|+.+++++||..+++|....|.+|-|+|.+|...++
T Consensus       341 QTALMLAVSHGr~d~vk~LLacgAd-VNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~DgSTAl~IAleagh  419 (452)
T KOG0514|consen  341 QTALMLAVSHGRVDMVKALLACGAD-VNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGSTALSIALEAGH  419 (452)
T ss_pred             chhhhhhhhcCcHHHHHHHHHccCC-CccccCCccHHHhhhhhhChHHHHHHHhccCcccceeecCCCchhhhhHHhcCc
Confidence            9999999999999999999999998 889999999999999999999999999998899999999999999999988887


Q ss_pred             chhhHH
Q 011183          247 SEEASE  252 (491)
Q Consensus       247 ~~~~~~  252 (491)
                      .+....
T Consensus       420 ~eIa~m  425 (452)
T KOG0514|consen  420 REIAVM  425 (452)
T ss_pred             hHHHHH
Confidence            764433

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.84  E-value=3.1e-20  Score=165.02  Aligned_cols=145  Identities=17%  Similarity=0.150  Sum_probs=113.2

Q ss_pred             chhhhhccCCCCCCHHHHHHHcCCH----HHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHH---HHHHHhcCCCC
Q 011183           18 RSSVVNEVNELGETALFTAADKGHI----EVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAI---VQVLLDHDPSL   90 (491)
Q Consensus        18 ~~~~l~~~~~~g~T~Lh~Aa~~g~~----~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~i---v~~Ll~~~~~l   90 (491)
                      ++.+++..+.++.++||.|++.|+.    ++++.|++.+..  ++.+|..|+||||+|+..|+.+.   +++|+++|+++
T Consensus         9 ~~~~~~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~--~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadi   86 (166)
T PHA02743          9 NNLGAVEIDEDEQNTFLRICRTGNIYELMEVAPFISGDGHL--LHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADI   86 (166)
T ss_pred             cchHHhhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchh--hhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCC
Confidence            4566777888888999999999987    555566665544  56778889999999998887654   78888888887


Q ss_pred             cccCC-CCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhCCcccccccCCCC
Q 011183           91 SQTTG-PSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKG  166 (491)
Q Consensus        91 ~~~~~-~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g  166 (491)
                       +.++ ..|.||||+|+..|+.+++++|++..+.+++..+.+|.||||+|+..++.+++++|+++++++ +..+..|
T Consensus        87 -n~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~-~~~~~~~  161 (166)
T PHA02743         87 -NARELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAYKMRDRRMMEILRANGAVC-DDPLSIG  161 (166)
T ss_pred             -CCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcccCC
Confidence             4555 578888888888888888888886546677778888888888888888888888888888776 4445444

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.84  E-value=8.8e-21  Score=176.86  Aligned_cols=179  Identities=30%  Similarity=0.374  Sum_probs=153.6

Q ss_pred             CHHHHHHHHhccC-------ccccccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCCHHHHHHH-----c
Q 011183           41 HIEVVNELLKYST-------KEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAAT-----R  108 (491)
Q Consensus        41 ~~~~v~~Ll~~~~-------~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~-----~  108 (491)
                      +.+.|+..|....       +..++..|.+|+|+||+|+..+|+++|+.||+.|..-.+.+|.-|.||+++++.     .
T Consensus       238 ~pe~V~~~l~~f~als~~lL~yvVNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~  317 (452)
T KOG0514|consen  238 DPEQVEDYLAYFEALSPPLLEYVVNLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQP  317 (452)
T ss_pred             CHHHHHHHHHHHHhcChHHHHHHhhhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcch
Confidence            5666665554321       123677899999999999999999999999999887778999999999999874     3


Q ss_pred             CCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCCHHHHHHhCCCHHHHHHHHhc
Q 011183          109 GHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEA  188 (491)
Q Consensus       109 g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~~~~iv~~Ll~~  188 (491)
                      .+.++|..|+..+ +........|+|+|++|+.+|+.++++.||..++++ +.+|.+|.|+|.+|+++|+.|++++|+..
T Consensus       318 ~d~~vV~~LF~mg-nVNaKAsQ~gQTALMLAVSHGr~d~vk~LLacgAdV-NiQDdDGSTALMCA~EHGhkEivklLLA~  395 (452)
T KOG0514|consen  318 ADRTVVERLFKMG-DVNAKASQHGQTALMLAVSHGRVDMVKALLACGADV-NIQDDDGSTALMCAAEHGHKEIVKLLLAV  395 (452)
T ss_pred             hhHHHHHHHHhcc-CcchhhhhhcchhhhhhhhcCcHHHHHHHHHccCCC-ccccCCccHHHhhhhhhChHHHHHHHhcc
Confidence            4578999999774 323334567999999999999999999999999998 88999999999999999999999999987


Q ss_pred             CcccccCCCCCCChHHHHHHHcCcHHHHHHHhc
Q 011183          189 DAAIVMLPDKFGNTALHVATRKKRTEIVTELLS  221 (491)
Q Consensus       189 ~~~~~~~~d~~G~TpLh~A~~~~~~~iv~~Ll~  221 (491)
                      ........|.+|.|+|.+|...|+.+|.-.|..
T Consensus       396 p~cd~sLtD~DgSTAl~IAleagh~eIa~mlYa  428 (452)
T KOG0514|consen  396 PSCDISLTDVDGSTALSIALEAGHREIAVMLYA  428 (452)
T ss_pred             CcccceeecCCCchhhhhHHhcCchHHHHHHHH
Confidence            765577899999999999999999999988865

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.83  E-value=5.8e-20  Score=163.26  Aligned_cols=138  Identities=15%  Similarity=0.212  Sum_probs=89.7

Q ss_pred             CCCCCCCHHHHHHHcCCH----HHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHH---HHHHHHhCCcccccccC-CC
Q 011183           94 TGPSNATPLVSAATRGHT----AVVNELLSKDGGLLEISRSNGKNALHFAARQGHVD---VVKALLSKDPQLARRTD-KK  165 (491)
Q Consensus        94 ~~~~g~tpL~~A~~~g~~----~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~---iv~~Ll~~~~~~~~~~d-~~  165 (491)
                      .+.++.+++|.||+.|+.    +++++|++. +...+..|.+|+||||+|+..|+.+   ++++|++.+.++ +.+| ..
T Consensus        16 ~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~-g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadi-n~~d~~~   93 (166)
T PHA02743         16 IDEDEQNTFLRICRTGNIYELMEVAPFISGD-GHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADI-NARELGT   93 (166)
T ss_pred             hccCCCcHHHHHHHcCCHHHHHHHHHHHhhc-chhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCC-CCCCCCC
Confidence            344555666666666665    333334433 3445556666777777777666544   366777777665 4455 46


Q ss_pred             CCCHHHHHHhCCCHHHHHHHHh-cCcccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCC
Q 011183          166 GQTALHMAVKGQSCEVVKLLLE-ADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHK  235 (491)
Q Consensus       166 g~t~Lh~Aa~~~~~~iv~~Ll~-~~~~~~~~~d~~G~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~d~~G~  235 (491)
                      |+||||+|+..++.+++++|++ .+++ ++.+|..|.||||+|+..++.+++++|++ .|++++.++..|.
T Consensus        94 g~TpLh~A~~~g~~~iv~~Ll~~~gad-~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~-~ga~~~~~~~~~~  162 (166)
T PHA02743         94 GNTLLHIAASTKNYELAEWLCRQLGVN-LGAINYQHETAYHIAYKMRDRRMMEILRA-NGAVCDDPLSIGL  162 (166)
T ss_pred             CCcHHHHHHHhCCHHHHHHHHhccCCC-ccCcCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCcccCCc
Confidence            7777777777777777777774 5666 56677777777777777777777777777 6777777766654

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.83  E-value=5.1e-20  Score=161.93  Aligned_cols=136  Identities=18%  Similarity=0.169  Sum_probs=107.8

Q ss_pred             hhhhccCCCCCCHHHHHHHcCCHHHHHHHHhccC--c---cccccCCCCCChHHHHHHHcCcH---HHHHHHHhcCCCCc
Q 011183           20 SVVNEVNELGETALFTAADKGHIEVVNELLKYST--K---EGLTRKNRSGFDPLHIAAVQGHH---AIVQVLLDHDPSLS   91 (491)
Q Consensus        20 ~~l~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~--~---~~l~~~~~~g~TpLh~A~~~g~~---~iv~~Ll~~~~~l~   91 (491)
                      ...+.+|.+|.||||+|++.|+.  ++.+...+.  +   ..+...|..|.||||+|+..|+.   +++++|++.|+++ 
T Consensus         8 ~~~~~~d~~g~tpLh~A~~~g~~--~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadi-   84 (154)
T PHA02736          8 IFASEPDIEGENILHYLCRNGGV--TDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADI-   84 (154)
T ss_pred             hHHHhcCCCCCCHHHHHHHhCCH--HHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCc-
Confidence            45677899999999999999984  233322111  1   12345688899999999999886   4688899999987 


Q ss_pred             ccCC-CCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhCCccc
Q 011183           92 QTTG-PSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQL  158 (491)
Q Consensus        92 ~~~~-~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~  158 (491)
                      +..+ ..|.||||+|+..|+.+++++|+.+.+.+++..|..|.||||+|+..|+.+++++|++.+++.
T Consensus        85 n~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga~~  152 (154)
T PHA02736         85 NGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACERHDAKMMNILRAKGAQC  152 (154)
T ss_pred             cccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            4555 589999999999999999999997656778888899999999999999999999999887664

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.82  E-value=1.1e-19  Score=152.70  Aligned_cols=153  Identities=29%  Similarity=0.278  Sum_probs=135.7

Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCCHHHHHHhCCCHH
Q 011183          101 PLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCE  180 (491)
Q Consensus       101 pL~~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~~~~  180 (491)
                      -+.+|+..+....|+.||+..+..++.+|.+|.||||-|+.+|+.+|++.|+..+++. +.+...|+||||-||+.++.+
T Consensus        66 l~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~-~a~T~~GWTPLhSAckWnN~~  144 (228)
T KOG0512|consen   66 LLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANK-EAKTNEGWTPLHSACKWNNFE  144 (228)
T ss_pred             HHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCCc-ccccccCccchhhhhcccchh
Confidence            3678899999999999999988899999999999999999999999999999999997 778899999999999999999


Q ss_pred             HHHHHHhcCcccccCCCCCCChHHHHHHHcCcH-HHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCchhhHHHHH
Q 011183          181 VVKLLLEADAAIVMLPDKFGNTALHVATRKKRT-EIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKD  255 (491)
Q Consensus       181 iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~~~~-~iv~~Ll~~~g~~~~~~d~~G~t~L~~A~~~~~~~~~~~i~~  255 (491)
                      ++..|+++|++ +|.......||||+|+...+. ..+++|+...++++..+++.+.||+++|.+.+-+....++.+
T Consensus       145 va~~LLqhgaD-VnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iARRT~~s~~lfe~~e  219 (228)
T KOG0512|consen  145 VAGRLLQHGAD-VNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAFDIARRTSMSHYLFEIVE  219 (228)
T ss_pred             HHHHHHhccCc-ccccccccchhhHHhhcccchHHHHHHHhhccccChhhhcCccchHHHHHHHhhhhHHHHHHHH
Confidence            99999999999 788888889999999987765 567788887899999999999999999988765554444443

>PHA02741 hypothetical protein; Provisional

Probab=99.82  E-value=1.4e-19  Score=161.57  Aligned_cols=129  Identities=26%  Similarity=0.391  Sum_probs=77.1

Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHhC------CcccccccCCCCCCHHHHHHhCCC----HHHHHHHHhcCcccccCCC
Q 011183          128 SRSNGKNALHFAARQGHVDVVKALLSK------DPQLARRTDKKGQTALHMAVKGQS----CEVVKLLLEADAAIVMLPD  197 (491)
Q Consensus       128 ~d~~g~tpLh~A~~~g~~~iv~~Ll~~------~~~~~~~~d~~g~t~Lh~Aa~~~~----~~iv~~Ll~~~~~~~~~~d  197 (491)
                      .|..|.||||+|+..|+.++++.|+..      +.++ +.+|..|+||||+|+..++    .+++++|++.|++ ++.+|
T Consensus        17 ~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~i-n~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gad-in~~~   94 (169)
T PHA02741         17 KNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAAL-NATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGAD-INAQE   94 (169)
T ss_pred             cccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhh-hccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCC-CCCCC
Confidence            345566666666666666666655432      2232 4556666666666666666    3666666666666 45555


Q ss_pred             C-CCChHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCchhhHHHHHHHHHcCc
Q 011183          198 K-FGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGA  262 (491)
Q Consensus       198 ~-~G~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~d~~G~t~L~~A~~~~~~~~~~~i~~~L~~~ga  262 (491)
                      . .|+||||+|+..++.+++++|+...|++++..|..|+||||+|...++.    ++.+.|.++++
T Consensus        95 ~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~~~----~iv~~L~~~~~  156 (169)
T PHA02741         95 MLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDNEDV----AMMQILREIVA  156 (169)
T ss_pred             cCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHCCCH----HHHHHHHHHHH
Confidence            3 6666666666666666666666544666666666666666666665543    24444444443

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.82  E-value=6e-20  Score=180.00  Aligned_cols=187  Identities=29%  Similarity=0.373  Sum_probs=158.7

Q ss_pred             chhhhhccCCCCCCHHHHHHHcCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCC
Q 011183           18 RSSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPS   97 (491)
Q Consensus        18 ~~~~l~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~   97 (491)
                      .++.+|..|.+|.|+||.++...+.+||++|++++++  ++..|..|+||||.|+.+|+..++++|+++|+++ ...|.+
T Consensus        62 ~ga~~~~~n~DglTalhq~~id~~~e~v~~l~e~ga~--Vn~~d~e~wtPlhaaascg~~~i~~~li~~gA~~-~avNsd  138 (527)
T KOG0505|consen   62 RGASPNLCNVDGLTALHQACIDDNLEMVKFLVENGAN--VNAQDNEGWTPLHAAASCGYLNIVEYLIQHGANL-LAVNSD  138 (527)
T ss_pred             cCCCccccCCccchhHHHHHhcccHHHHHHHHHhcCC--ccccccccCCcchhhcccccHHHHHHHHHhhhhh-hhccCC
Confidence            4577799999999999999999999999999999877  7899999999999999999999999999999987 455666


Q ss_pred             CCCHHHHHHHcCCHH--------------------------HHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHH
Q 011183           98 NATPLVSAATRGHTA--------------------------VVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKAL  151 (491)
Q Consensus        98 g~tpL~~A~~~g~~~--------------------------~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~L  151 (491)
                      |..|+..+..-...+                          -+...+. .+...+..+..|.|.||.|+.+|+.++.++|
T Consensus       139 g~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~-~G~~~d~~~~rG~T~lHvAaa~Gy~e~~~lL  217 (527)
T KOG0505|consen  139 GNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLN-AGAELDARHARGATALHVAAANGYTEVAALL  217 (527)
T ss_pred             CCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHh-ccccccccccccchHHHHHHhhhHHHHHHHH
Confidence            666655442211111                          1222233 3556677777799999999999999999999


Q ss_pred             HhCCcccccccCCCCCCHHHHHHhCCCHHHHHHHHhcCcccccCCCCCCChHHHHHHHc
Q 011183          152 LSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRK  210 (491)
Q Consensus       152 l~~~~~~~~~~d~~g~t~Lh~Aa~~~~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~  210 (491)
                      ++.+.++ +.+|.+||||||.|+..|..++.++|++++++ .+.....|.||+.+|...
T Consensus       218 l~ag~~~-~~~D~dgWtPlHAAA~Wg~~~~~elL~~~ga~-~d~~t~~g~~p~dv~dee  274 (527)
T KOG0505|consen  218 LQAGYSV-NIKDYDGWTPLHAAAHWGQEDACELLVEHGAD-MDAKTKMGETPLDVADEE  274 (527)
T ss_pred             HHhccCc-ccccccCCCcccHHHHhhhHhHHHHHHHhhcc-cchhhhcCCCCccchhhh
Confidence            9999997 78899999999999999999999999999999 777889999999998764

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.81  E-value=6.7e-19  Score=168.71  Aligned_cols=155  Identities=14%  Similarity=0.169  Sum_probs=74.1

Q ss_pred             cCCCCCC-HHHHHHHcCCHHHHHHHHhccCcccccc--CCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCCH
Q 011183           25 VNELGET-ALFTAADKGHIEVVNELLKYSTKEGLTR--KNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATP  101 (491)
Q Consensus        25 ~~~~g~T-~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~--~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~tp  101 (491)
                      .|..|.| +||.|+..|+.++++.|+++|++.+...  .+..|.||||+|+..|+.+++++|+++|+++....+..|.||
T Consensus        28 ~d~~~~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~Tp  107 (300)
T PHA02884         28 KNKICIANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKITP  107 (300)
T ss_pred             cCcCCCCHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCCCH
Confidence            3444443 3334444455555555555554422111  123455555555555555555555555555522223345555


Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCCHHHHHHhCCCHHH
Q 011183          102 LVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEV  181 (491)
Q Consensus       102 L~~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~~~~i  181 (491)
                      ||.|+..|+.+++++|++. +++++..|.+|.||||.|+..++.+++..+...      ..+..+.+|++.+   ++.++
T Consensus       108 Lh~Aa~~~~~eivklLL~~-GAdin~kd~~G~TpL~~A~~~~~~~~~~~~~~~------~~~~~~~~~~~~~---~n~ei  177 (300)
T PHA02884        108 LYISVLHGCLKCLEILLSY-GADINIQTNDMVTPIELALMICNNFLAFMICDN------EISNFYKHPKKIL---INFDI  177 (300)
T ss_pred             HHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHhCChhHHHHhcCC------cccccccChhhhh---ccHHH
Confidence            5555555555555555544 344455555555555555555555544333311      1233444454443   23455


Q ss_pred             HHHHHhcC
Q 011183          182 VKLLLEAD  189 (491)
Q Consensus       182 v~~Ll~~~  189 (491)
                      +++|+.++
T Consensus       178 ~~~Lish~  185 (300)
T PHA02884        178 LKILVSHF  185 (300)
T ss_pred             HHHHHHHH
Confidence            55555443

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.80  E-value=6.6e-20  Score=190.50  Aligned_cols=249  Identities=25%  Similarity=0.290  Sum_probs=181.0

Q ss_pred             HHHHHhhchhhhhccCCCCCCHHHHHHHcCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCC
Q 011183           11 DTEVAEIRSSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSL   90 (491)
Q Consensus        11 ~~~~~~~~~~~l~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l   90 (491)
                      .-|++-++++.+..+|..|.+||.+|+..||..+|+.|+...++.. ...|+.+.|+|.+||..|+.++|++||..|++-
T Consensus       772 ~vellv~rganiehrdkkgf~plImaatagh~tvV~~llk~ha~ve-aQsdrtkdt~lSlacsggr~~vvelLl~~gank  850 (2131)
T KOG4369|consen  772 EVELLVVRGANIEHRDKKGFVPLIMAATAGHITVVQDLLKAHADVE-AQSDRTKDTMLSLACSGGRTRVVELLLNAGANK  850 (2131)
T ss_pred             HHHHHHHhcccccccccccchhhhhhcccCchHHHHHHHhhhhhhh-hhcccccCceEEEecCCCcchHHHHHHHhhccc
Confidence            3455667788888899999999999999999999999888655432 346777888888888888888888888888875


Q ss_pred             cccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccc--ccCCCCCcHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCC
Q 011183           91 SQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLE--ISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQT  168 (491)
Q Consensus        91 ~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~--~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t  168 (491)
                       ..++-...|||.+|...|..+++..||..+.. ++  .-.+-|.+||++|..+|+.+.++.|++.+.+++.....+.+|
T Consensus       851 -ehrnvsDytPlsla~Sggy~~iI~~llS~Gse-InSrtgSklgisPLmlatmngh~~at~~ll~~gsdiNaqIeTNrnT  928 (2131)
T KOG4369|consen  851 -EHRNVSDYTPLSLARSGGYTKIIHALLSSGSE-INSRTGSKLGISPLMLATMNGHQAATLSLLQPGSDINAQIETNRNT  928 (2131)
T ss_pred             -cccchhhcCchhhhcCcchHHHHHHHhhcccc-cccccccccCcchhhhhhhccccHHHHHHhcccchhcccccccccc
Confidence             56677778888888888888888888877432 22  234567888888888888888888888888876656666777


Q ss_pred             HHHHHHhCCCHHHHHHHHhcCcccccCCCCCCChHHHHHHHcCcHHHHHHHhcC--------------------------
Q 011183          169 ALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSL--------------------------  222 (491)
Q Consensus       169 ~Lh~Aa~~~~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~~~~~iv~~Ll~~--------------------------  222 (491)
                      +|-+|+..|+.+++.+|+.+.+. +..+-+.|.|||+-++..|..++-+.||..                          
T Consensus       929 altla~fqgr~evv~lLLa~~an-vehRaktgltplme~AsgGyvdvg~~li~~gad~nasPvp~T~dtalti~a~kGh~ 1007 (2131)
T KOG4369|consen  929 ALTLALFQGRPEVVFLLLAAQAN-VEHRAKTGLTPLMEMASGGYVDVGNLLIAAGADTNASPVPNTWDTALTIPANKGHT 1007 (2131)
T ss_pred             ceeeccccCcchHHHHHHHHhhh-hhhhcccCCcccchhhcCCccccchhhhhcccccccCCCCCcCCccceeecCCCch
Confidence            77777777777777777776665 445556666666666666655555555540                          


Q ss_pred             --------CCCCcccccCCCCCHHHHHhhCCCchhhHHHHHHHHHcCcccccc
Q 011183          223 --------PDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVRANE  267 (491)
Q Consensus       223 --------~g~~~~~~d~~G~t~L~~A~~~~~~~~~~~i~~~L~~~ga~~~~~  267 (491)
                              ..+.+..+|++|.|+|.+|+.-+...    ...+|...+++....
T Consensus      1008 kfv~~lln~~atv~v~NkkG~T~Lwla~~Gg~ls----s~~il~~~~ad~d~q 1056 (2131)
T KOG4369|consen 1008 KFVPKLLNGDATVRVPNKKGCTVLWLASAGGALS----SCPILVSSVADADQQ 1056 (2131)
T ss_pred             hhhHHhhCCccceecccCCCCcccchhccCCccc----cchHHhhcccChhhh
Confidence                    33445567888888888887765544    445566666654433

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.79  E-value=1.2e-17  Score=171.60  Aligned_cols=190  Identities=27%  Similarity=0.358  Sum_probs=156.8

Q ss_pred             CHHHHHHHcCCHHHHHHHHhccC-------ccccccCCCCCChHHHHHHH---cCcHHHHHHHHhcCCCCccc----CCC
Q 011183           31 TALFTAADKGHIEVVNELLKYST-------KEGLTRKNRSGFDPLHIAAV---QGHHAIVQVLLDHDPSLSQT----TGP   96 (491)
Q Consensus        31 T~Lh~Aa~~g~~~~v~~Ll~~~~-------~~~l~~~~~~g~TpLh~A~~---~g~~~iv~~Ll~~~~~l~~~----~~~   96 (491)
                      .++..|...+.++....|+..+.       +..++.+...|+|.||.|..   .++.++++.|++.-|.+.+.    ...
T Consensus       103 ~~~~~~~~~~~l~~l~~l~~~~~~~k~r~~~w~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY  182 (782)
T KOG3676|consen  103 DALFIADSEGALSDLDGLLKFLRKSKYRLTDWKLNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEY  182 (782)
T ss_pred             hhhhhccccccHHHHhccchhhhhhhhhhhhhccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhh
Confidence            57778888888888888877552       23456667789999999976   45668999999987765432    234


Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHhcCCCccccc--------C---------------CCCCcHHHHHHHcCCHHHHHHHHh
Q 011183           97 SNATPLVSAATRGHTAVVNELLSKDGGLLEIS--------R---------------SNGKNALHFAARQGHVDVVKALLS  153 (491)
Q Consensus        97 ~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~--------d---------------~~g~tpLh~A~~~g~~~iv~~Ll~  153 (491)
                      .|.||||.|+.+.+.++|++|++.+ ++++.+        +               ..|..||..||..++.|++++|++
T Consensus       183 ~GqSaLHiAIv~~~~~~V~lLl~~g-ADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~  261 (782)
T KOG3676|consen  183 YGQSALHIAIVNRDAELVRLLLAAG-ADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLA  261 (782)
T ss_pred             cCcchHHHHHHhccHHHHHHHHHcC-CchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHh
Confidence            6899999999999999999999874 333311        1               237889999999999999999999


Q ss_pred             CCcccccccCCCCCCHHHHHHhCCCHHHHHHHHhcCcc-cccCCCCCCChHHHHHHHcCcHHHHHHHhcC
Q 011183          154 KDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAA-IVMLPDKFGNTALHVATRKKRTEIVTELLSL  222 (491)
Q Consensus       154 ~~~~~~~~~d~~g~t~Lh~Aa~~~~~~iv~~Ll~~~~~-~~~~~d~~G~TpLh~A~~~~~~~iv~~Ll~~  222 (491)
                      +++|+ +.+|..|+|.||..+..-..++..+++++|++ ....++++|-|||-+|++-|+.++.+.+++.
T Consensus       262 ~gAd~-~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTPLtLAaklGk~emf~~ile~  330 (782)
T KOG3676|consen  262 HGADP-NAQDSNGNTVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTPLTLAAKLGKKEMFQHILER  330 (782)
T ss_pred             cCCCC-CccccCCChHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCChHHHHHHhhhHHHHHHHHHh
Confidence            99998 88999999999999999899999999999987 3456889999999999999999999999985

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.79  E-value=1.3e-19  Score=188.22  Aligned_cols=232  Identities=28%  Similarity=0.312  Sum_probs=208.2

Q ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCCHHHHHH
Q 011183           27 ELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAA  106 (491)
Q Consensus        27 ~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~  106 (491)
                      .+-+|+|-.|+..||.|+|+.|+..|++  +..+|+.|.+||.+|+-.||..+|+.|+.+.+++....|..+.|+|.+||
T Consensus       755 ~n~~t~LT~acaggh~e~vellv~rgan--iehrdkkgf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lSlac  832 (2131)
T KOG4369|consen  755 PNIKTNLTSACAGGHREEVELLVVRGAN--IEHRDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLSLAC  832 (2131)
T ss_pred             ccccccccccccCccHHHHHHHHHhccc--ccccccccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEEEec
Confidence            3457999999999999999999998877  68899999999999999999999999999999998899999999999999


Q ss_pred             HcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhCCccccccc-CCCCCCHHHHHHhCCCHHHHHHH
Q 011183          107 TRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRT-DKKGQTALHMAVKGQSCEVVKLL  185 (491)
Q Consensus       107 ~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~-d~~g~t~Lh~Aa~~~~~~iv~~L  185 (491)
                      ..|..++++.||.. ++....++-...|||.+|...|+.+++..|+..|.++.... .+.|-.||.+|..+|+.+.++.|
T Consensus       833 sggr~~vvelLl~~-gankehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~at~~l  911 (2131)
T KOG4369|consen  833 SGGRTRVVELLLNA-GANKEHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAATLSL  911 (2131)
T ss_pred             CCCcchHHHHHHHh-hccccccchhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhccccHHHHHH
Confidence            99999999999988 45556678888999999999999999999999998874433 45789999999999999999999


Q ss_pred             HhcCcccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCchhhHHHHHHHHHcCcccc
Q 011183          186 LEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVRA  265 (491)
Q Consensus       186 l~~~~~~~~~~d~~G~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~d~~G~t~L~~A~~~~~~~~~~~i~~~L~~~ga~~~  265 (491)
                      ++.|.++.....-+-+|+|-+|+-.|+.+++.+||. ..+++..+-..|.|||.-++..+..+    +=+.|+..|++.+
T Consensus       912 l~~gsdiNaqIeTNrnTaltla~fqgr~evv~lLLa-~~anvehRaktgltplme~AsgGyvd----vg~~li~~gad~n  986 (2131)
T KOG4369|consen  912 LQPGSDINAQIETNRNTALTLALFQGRPEVVFLLLA-AQANVEHRAKTGLTPLMEMASGGYVD----VGNLLIAAGADTN  986 (2131)
T ss_pred             hcccchhccccccccccceeeccccCcchHHHHHHH-HhhhhhhhcccCCcccchhhcCCccc----cchhhhhcccccc
Confidence            999999655566788999999999999999999999 79999999999999999988877654    6678888888765


Q ss_pred             c
Q 011183          266 N  266 (491)
Q Consensus       266 ~  266 (491)
                      .
T Consensus       987 a  987 (2131)
T KOG4369|consen  987 A  987 (2131)
T ss_pred             c
Confidence            3

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.78  E-value=5e-19  Score=155.61  Aligned_cols=97  Identities=19%  Similarity=0.267  Sum_probs=59.1

Q ss_pred             cCCCCCcHHHHHHHcCCH---HHHHHHHhCCcccccccC-CCCCCHHHHHHhCCCHHHHHHHHhc-CcccccCCCCCCCh
Q 011183          128 SRSNGKNALHFAARQGHV---DVVKALLSKDPQLARRTD-KKGQTALHMAVKGQSCEVVKLLLEA-DAAIVMLPDKFGNT  202 (491)
Q Consensus       128 ~d~~g~tpLh~A~~~g~~---~iv~~Ll~~~~~~~~~~d-~~g~t~Lh~Aa~~~~~~iv~~Ll~~-~~~~~~~~d~~G~T  202 (491)
                      .|.+|+||||+|+..|+.   ++++.|++.+.++ +.+| ..|+||||+|++.++.+++++|++. +++ ++.+|..|.|
T Consensus        51 ~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadi-n~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d-~n~~~~~g~t  128 (154)
T PHA02736         51 YNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADI-NGKERVFGNTPLHIAVYTQNYELATWLCNQPGVN-MEILNYAFKT  128 (154)
T ss_pred             hcCCCCEEEEeecccCchhHHHHHHHHHHcCCCc-cccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCC-CccccCCCCC
Confidence            455566666666666654   3455666666655 3444 3666666666666666666666653 444 5566666666


Q ss_pred             HHHHHHHcCcHHHHHHHhcCCCCCc
Q 011183          203 ALHVATRKKRTEIVTELLSLPDTNV  227 (491)
Q Consensus       203 pLh~A~~~~~~~iv~~Ll~~~g~~~  227 (491)
                      |||+|+..++.+++++|++ .|++.
T Consensus       129 pL~~A~~~~~~~i~~~Ll~-~ga~~  152 (154)
T PHA02736        129 PYYVACERHDAKMMNILRA-KGAQC  152 (154)
T ss_pred             HHHHHHHcCCHHHHHHHHH-cCCCC
Confidence            6666666666666666665 45544

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.78  E-value=5e-18  Score=162.73  Aligned_cols=153  Identities=15%  Similarity=0.152  Sum_probs=104.7

Q ss_pred             ccCCCCCCh-HHHHHHHcCcHHHHHHHHhcCCCCccc---CCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccc-CCCC
Q 011183           58 TRKNRSGFD-PLHIAAVQGHHAIVQVLLDHDPSLSQT---TGPSNATPLVSAATRGHTAVVNELLSKDGGLLEIS-RSNG  132 (491)
Q Consensus        58 ~~~~~~g~T-pLh~A~~~g~~~iv~~Ll~~~~~l~~~---~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~-d~~g  132 (491)
                      ..+|+.|.| +||.|+..|+.+++++|+++|+++...   .+..|.||||+|+..|+.+++++|+++ |++++.. +..|
T Consensus        26 ~~~d~~~~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~-GADVN~~~~~~g  104 (300)
T PHA02884         26 KKKNKICIANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRY-GADVNRYAEEAK  104 (300)
T ss_pred             hccCcCCCCHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCcCcccCCCC
Confidence            345666654 556667778888888888888887332   134677888888888888888777776 5566654 4567


Q ss_pred             CcHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCCHHHHHHhCCCHHHHHHHHhcCcccccCCCCCCChHHHHHHHcCc
Q 011183          133 KNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKR  212 (491)
Q Consensus       133 ~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~~~  212 (491)
                      .||||.|+..|+.+++++|++.|+++ +..|..|.||||+|++.++.+++..+.  |..    .+..+.+|++++   ++
T Consensus       105 ~TpLh~Aa~~~~~eivklLL~~GAdi-n~kd~~G~TpL~~A~~~~~~~~~~~~~--~~~----~~~~~~~~~~~~---~n  174 (300)
T PHA02884        105 ITPLYISVLHGCLKCLEILLSYGADI-NIQTNDMVTPIELALMICNNFLAFMIC--DNE----ISNFYKHPKKIL---IN  174 (300)
T ss_pred             CCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHhCChhHHHHhc--CCc----ccccccChhhhh---cc
Confidence            77777777777777777777777776 566777777777777777776665443  211    355566777754   35


Q ss_pred             HHHHHHHhc
Q 011183          213 TEIVTELLS  221 (491)
Q Consensus       213 ~~iv~~Ll~  221 (491)
                      .++++.|+.
T Consensus       175 ~ei~~~Lis  183 (300)
T PHA02884        175 FDILKILVS  183 (300)
T ss_pred             HHHHHHHHH
Confidence            667776666

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.75  E-value=1.3e-17  Score=140.36  Aligned_cols=144  Identities=26%  Similarity=0.314  Sum_probs=117.1

Q ss_pred             HHHHHHHcCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCCH
Q 011183           32 ALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHT  111 (491)
Q Consensus        32 ~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~~g~~  111 (491)
                      .+.+|+..+....|+.||+..++. ++.+|.+|.||||-|+.+|+.+||+.|+..|++. ..+...|+||||-||.-++.
T Consensus        66 l~lwaae~nrl~eV~~lL~e~an~-vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~-~a~T~~GWTPLhSAckWnN~  143 (228)
T KOG0512|consen   66 LLLWAAEKNRLTEVQRLLSEKANH-VNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANK-EAKTNEGWTPLHSACKWNNF  143 (228)
T ss_pred             HHHHHHhhccHHHHHHHHHhcccc-ccccccccccHHHHHHhcCchHHHHHHHHccCCc-ccccccCccchhhhhcccch
Confidence            567899999999999999876554 6889999999999999999999999999999987 66778899999999999999


Q ss_pred             HHHHHHHhcCCCcccccCCCCCcHHHHHHHcCC-HHHHHHHHhCCcccccccCCCCCCHHHHHHhCCC
Q 011183          112 AVVNELLSKDGGLLEISRSNGKNALHFAARQGH-VDVVKALLSKDPQLARRTDKKGQTALHMAVKGQS  178 (491)
Q Consensus       112 ~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~-~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~~  178 (491)
                      +++.+||++ +++++.......||||.||...+ ...+++|+....--....+..+.||+.+|-+.+-
T Consensus       144 ~va~~LLqh-gaDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iARRT~~  210 (228)
T KOG0512|consen  144 EVAGRLLQH-GADVNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAFDIARRTSM  210 (228)
T ss_pred             hHHHHHHhc-cCcccccccccchhhHHhhcccchHHHHHHHhhccccChhhhcCccchHHHHHHHhhh
Confidence            999999988 66788888888999999987655 4455555554332235667788999999877654

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.74  E-value=2.3e-18  Score=155.99  Aligned_cols=134  Identities=31%  Similarity=0.412  Sum_probs=120.5

Q ss_pred             HHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCCHHHHHHhCCCHHHHHHH
Q 011183          106 ATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLL  185 (491)
Q Consensus       106 ~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~~~~iv~~L  185 (491)
                      |+.|+.--++..|+....+.+.-|..|.+|||+||+.|+..+++.|+.+|+.+ +..+.-..||||+|+.+|+-++++.|
T Consensus         8 cregna~qvrlwld~tehdln~gddhgfsplhwaakegh~aivemll~rgarv-n~tnmgddtplhlaaahghrdivqkl   86 (448)
T KOG0195|consen    8 CREGNAFQVRLWLDDTEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARV-NSTNMGDDTPLHLAAAHGHRDIVQKL   86 (448)
T ss_pred             hhcCCeEEEEEEecCcccccccccccCcchhhhhhhcccHHHHHHHHhccccc-ccccCCCCcchhhhhhcccHHHHHHH
Confidence            44555555556666667788899999999999999999999999999999987 66777778999999999999999999


Q ss_pred             HhcCcccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHh
Q 011183          186 LEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAE  242 (491)
Q Consensus       186 l~~~~~~~~~~d~~G~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~d~~G~t~L~~A~  242 (491)
                      ++..++ +|..+..|+||||+||.-|...+.+-|+. .|+.+++-|++|.||++.|.
T Consensus        87 l~~kad-vnavnehgntplhyacfwgydqiaedli~-~ga~v~icnk~g~tpldkak  141 (448)
T KOG0195|consen   87 LSRKAD-VNAVNEHGNTPLHYACFWGYDQIAEDLIS-CGAAVNICNKKGMTPLDKAK  141 (448)
T ss_pred             HHHhcc-cchhhccCCCchhhhhhhcHHHHHHHHHh-ccceeeecccCCCCchhhhc
Confidence            999999 89999999999999999999999999999 89999999999999999875

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.70  E-value=2.3e-15  Score=154.97  Aligned_cols=188  Identities=28%  Similarity=0.290  Sum_probs=155.7

Q ss_pred             hHHHHHHHcCcHHHHHHHHhcC---------CCCcccCCCCCCCHHHHHHH---cCCHHHHHHHHhcCCCcccc----cC
Q 011183           66 DPLHIAAVQGHHAIVQVLLDHD---------PSLSQTTGPSNATPLVSAAT---RGHTAVVNELLSKDGGLLEI----SR  129 (491)
Q Consensus        66 TpLh~A~~~g~~~iv~~Ll~~~---------~~l~~~~~~~g~tpL~~A~~---~g~~~~v~~LL~~~~~~~~~----~d  129 (491)
                      .++..|...+..+...-|+..+         -++ +.+..-|+|.||.|..   .++.++++.|++..+..++.    ..
T Consensus       103 ~~~~~~~~~~~l~~l~~l~~~~~~~k~r~~~w~~-~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~ee  181 (782)
T KOG3676|consen  103 DALFIADSEGALSDLDGLLKFLRKSKYRLTDWKL-NERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEE  181 (782)
T ss_pred             hhhhhccccccHHHHhccchhhhhhhhhhhhhcc-ccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHh
Confidence            6778888888888887777655         233 4456779999999986   45568999999876654432    23


Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHhCCcccccc--------cCC--------------CCCCHHHHHHhCCCHHHHHHHHh
Q 011183          130 SNGKNALHFAARQGHVDVVKALLSKDPQLARR--------TDK--------------KGQTALHMAVKGQSCEVVKLLLE  187 (491)
Q Consensus       130 ~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~--------~d~--------------~g~t~Lh~Aa~~~~~~iv~~Ll~  187 (491)
                      ..|.||||+|+.+.+.++|+.|++.|+|+...        .|.              .|+.||-+||-.++.|++++|++
T Consensus       182 Y~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~  261 (782)
T KOG3676|consen  182 YYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLA  261 (782)
T ss_pred             hcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHh
Confidence            46999999999999999999999999987431        122              36789999999999999999999


Q ss_pred             cCcccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCC--cccccCCCCCHHHHHhhCCCchhhHHHHHH
Q 011183          188 ADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTN--VNALTRDHKTALDIAEGLPSSEEASEIKDC  256 (491)
Q Consensus       188 ~~~~~~~~~d~~G~TpLh~A~~~~~~~iv~~Ll~~~g~~--~~~~d~~G~t~L~~A~~~~~~~~~~~i~~~  256 (491)
                      +|+| ++.+|.+|||.||..+..-..++..++++ .|++  ...+|+.|.|||-+|++.+..+..++|.+.
T Consensus       262 ~gAd-~~aqDS~GNTVLH~lVi~~~~~My~~~L~-~ga~~l~~v~N~qgLTPLtLAaklGk~emf~~ile~  330 (782)
T KOG3676|consen  262 HGAD-PNAQDSNGNTVLHMLVIHFVTEMYDLALE-LGANALEHVRNNQGLTPLTLAAKLGKKEMFQHILER  330 (782)
T ss_pred             cCCC-CCccccCCChHHHHHHHHHHHHHHHHHHh-cCCCccccccccCCCChHHHHHHhhhHHHHHHHHHh
Confidence            9999 89999999999999999999999999999 7888  889999999999999999887766655543

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.68  E-value=3.9e-17  Score=148.03  Aligned_cols=134  Identities=33%  Similarity=0.467  Sum_probs=107.3

Q ss_pred             HHcCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCCHHHHHH
Q 011183           37 ADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNE  116 (491)
Q Consensus        37 a~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~~g~~~~v~~  116 (491)
                      ++.|+.-.|+.-|+. .+.+++..|..|.+|||+||+.|+..+++.|+.+|+.+ +..|....||||+|+.+||.++++.
T Consensus         8 cregna~qvrlwld~-tehdln~gddhgfsplhwaakegh~aivemll~rgarv-n~tnmgddtplhlaaahghrdivqk   85 (448)
T KOG0195|consen    8 CREGNAFQVRLWLDD-TEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARV-NSTNMGDDTPLHLAAAHGHRDIVQK   85 (448)
T ss_pred             hhcCCeEEEEEEecC-cccccccccccCcchhhhhhhcccHHHHHHHHhccccc-ccccCCCCcchhhhhhcccHHHHHH
Confidence            344444344444442 23346778888999999999999999999999999887 6777777899999999999999999


Q ss_pred             HHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCCHHHHHH
Q 011183          117 LLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAV  174 (491)
Q Consensus       117 LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa  174 (491)
                      |++. .++++..+..|.||||+||.-|+..+.+-|+..|+.+ +..+++|.|||..|-
T Consensus        86 ll~~-kadvnavnehgntplhyacfwgydqiaedli~~ga~v-~icnk~g~tpldkak  141 (448)
T KOG0195|consen   86 LLSR-KADVNAVNEHGNTPLHYACFWGYDQIAEDLISCGAAV-NICNKKGMTPLDKAK  141 (448)
T ss_pred             HHHH-hcccchhhccCCCchhhhhhhcHHHHHHHHHhcccee-eecccCCCCchhhhc
Confidence            9877 6678888889999999999999999999999888876 777889999988874

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.68  E-value=1.4e-15  Score=127.75  Aligned_cols=124  Identities=40%  Similarity=0.606  Sum_probs=86.5

Q ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCCHHHH
Q 011183           25 VNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVS  104 (491)
Q Consensus        25 ~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~  104 (491)
                      .|.+|.||||.|+..|+.+++++|++.+...  ...+..|.||||.|+..++.+++++|++.++.+ +..+..|.||+|+
T Consensus         3 ~~~~g~t~l~~a~~~~~~~~i~~li~~~~~~--~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~-~~~~~~~~~~l~~   79 (126)
T cd00204           3 RDEDGRTPLHLAASNGHLEVVKLLLENGADV--NAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADV-NARDKDGNTPLHL   79 (126)
T ss_pred             cCcCCCCHHHHHHHcCcHHHHHHHHHcCCCC--CccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCHHHH
Confidence            4566777777777777777777777766542  556667777777777777777777777777654 4455667777777


Q ss_pred             HHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHH
Q 011183          105 AATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALL  152 (491)
Q Consensus       105 A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll  152 (491)
                      |+..++.+++++|++. +...+..+..|.||++.|...++.+++++|+
T Consensus        80 a~~~~~~~~~~~L~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          80 AARNGNLDVVKLLLKH-GADVNARDKDGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             HHHcCcHHHHHHHHHc-CCCCcccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence            7777777777777765 3344556666777777777777777666653

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.66  E-value=7.2e-16  Score=122.08  Aligned_cols=89  Identities=44%  Similarity=0.589  Sum_probs=71.7

Q ss_pred             HHHHHHcCCHHHHHHHHhCCcccccccCCCCCCHHHHHHhCCCHHHHHHHHhcCcccccCCCCCCChHHHHHHHcCcHHH
Q 011183          136 LHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEI  215 (491)
Q Consensus       136 Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~~~~~i  215 (491)
                      ||.|++.|+.++++.|++.+++...     |+||||+|+..|+.+++++|++.|++ ++.+|.+|+||||+|+.+++.++
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~~-----~~~~l~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~   74 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADINL-----GNTALHYAAENGNLEIVKLLLENGAD-INSQDKNGNTALHYAAENGNLEI   74 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTTS-----SSBHHHHHHHTTTHHHHHHHHHTTTC-TT-BSTTSSBHHHHHHHTTHHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCCC-----CCCHHHHHHHcCCHHHHHHHHHhccc-ccccCCCCCCHHHHHHHcCCHHH
Confidence            6888888888888888887766522     78888888888888888888888887 67788888888888888888888


Q ss_pred             HHHHhcCCCCCccccc
Q 011183          216 VTELLSLPDTNVNALT  231 (491)
Q Consensus       216 v~~Ll~~~g~~~~~~d  231 (491)
                      +++|++ .|++++.+|
T Consensus        75 ~~~Ll~-~g~~~~~~n   89 (89)
T PF12796_consen   75 VKLLLE-HGADVNIRN   89 (89)
T ss_dssp             HHHHHH-TTT-TTSS-
T ss_pred             HHHHHH-cCCCCCCcC
Confidence            888888 688888765

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.65  E-value=4.9e-15  Score=124.33  Aligned_cols=122  Identities=40%  Similarity=0.634  Sum_probs=72.9

Q ss_pred             CCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHH
Q 011183           61 NRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAA  140 (491)
Q Consensus        61 ~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~  140 (491)
                      |..|.||||.|+..|+.+++++|++.+++. ...+..|.||+|.|+..++.++++.|++.+ ...+..+..|.||+|.|+
T Consensus         4 ~~~g~t~l~~a~~~~~~~~i~~li~~~~~~-~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~-~~~~~~~~~~~~~l~~a~   81 (126)
T cd00204           4 DEDGRTPLHLAASNGHLEVVKLLLENGADV-NAKDNDGRTPLHLAAKNGHLEIVKLLLEKG-ADVNARDKDGNTPLHLAA   81 (126)
T ss_pred             CcCCCCHHHHHHHcCcHHHHHHHHHcCCCC-CccCCCCCcHHHHHHHcCCHHHHHHHHHcC-CCccccCCCCCCHHHHHH
Confidence            455667777777777777777777666654 455556666666666666666666666653 233444555666666666


Q ss_pred             HcCCHHHHHHHHhCCcccccccCCCCCCHHHHHHhCCCHHHHHHH
Q 011183          141 RQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLL  185 (491)
Q Consensus       141 ~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~~~~iv~~L  185 (491)
                      ..++.+++++|++++.+. ...|..|.||+|.|...++.+++++|
T Consensus        82 ~~~~~~~~~~L~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~L  125 (126)
T cd00204          82 RNGNLDVVKLLLKHGADV-NARDKDGRTPLHLAAKNGHLEVVKLL  125 (126)
T ss_pred             HcCcHHHHHHHHHcCCCC-cccCCCCCCHHHHHHhcCCHHHHHHh
Confidence            666666666666655443 33445555555555555555555554

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.61  E-value=4.4e-15  Score=117.52  Aligned_cols=81  Identities=31%  Similarity=0.451  Sum_probs=52.7

Q ss_pred             HHHHHHcCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCCHH
Q 011183           33 LFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTA  112 (491)
Q Consensus        33 Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~~g~~~  112 (491)
                      ||+|++.|+.+++++|++.+.+.  +.    |+||||+|+..|+.+++++|+++|+++ +..|.+|+||||+|+..|+.+
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~--~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~   73 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADI--NL----GNTALHYAAENGNLEIVKLLLENGADI-NSQDKNGNTALHYAAENGNLE   73 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTT--TS----SSBHHHHHHHTTTHHHHHHHHHTTTCT-T-BSTTSSBHHHHHHHTTHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCC--CC----CCCHHHHHHHcCCHHHHHHHHHhcccc-cccCCCCCCHHHHHHHcCCHH
Confidence            56677777777777777654332  21    666777777777777777777766665 455566667777777766667


Q ss_pred             HHHHHHhc
Q 011183          113 VVNELLSK  120 (491)
Q Consensus       113 ~v~~LL~~  120 (491)
                      ++++|+++
T Consensus        74 ~~~~Ll~~   81 (89)
T PF12796_consen   74 IVKLLLEH   81 (89)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHc
Confidence            76666665

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.55  E-value=2.1e-13  Score=126.91  Aligned_cols=128  Identities=33%  Similarity=0.482  Sum_probs=97.8

Q ss_pred             ccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCC-----HHHHHHHHhCCc--ccccccCC
Q 011183           92 QTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGH-----VDVVKALLSKDP--QLARRTDK  164 (491)
Q Consensus        92 ~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~-----~~iv~~Ll~~~~--~~~~~~d~  164 (491)
                      ...+..+.++++.++..+..+++.+++..+ .+++..+.+|.||||+|+..|+     .++++.|++.+.  +.....|.
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~  145 (235)
T COG0666          67 AARDLDGRLPLHSAASKGDDKIVKLLLASG-ADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDE  145 (235)
T ss_pred             ccCCccccCHHHHHHHcCcHHHHHHHHHcC-CCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCC
Confidence            344556677777777777777777777663 3447777778888888887777     788888888877  56566788


Q ss_pred             CCCCHHHHHHhCCCHHHHHHHHhcCcccccCCCCCCChHHHHHHHcCcHHHHHHHhc
Q 011183          165 KGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLS  221 (491)
Q Consensus       165 ~g~t~Lh~Aa~~~~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~~~~~iv~~Ll~  221 (491)
                      .|+||||+|+..|+.+++++|++.+++ .+..+..|.|+++.|+..++.++++.+++
T Consensus       146 ~g~tpl~~A~~~~~~~~~~~ll~~~~~-~~~~~~~g~t~l~~a~~~~~~~~~~~l~~  201 (235)
T COG0666         146 DGNTPLHWAALNGDADIVELLLEAGAD-PNSRNSYGVTALDPAAKNGRIELVKLLLD  201 (235)
T ss_pred             CCCchhHHHHHcCchHHHHHHHhcCCC-CcccccCCCcchhhhcccchHHHHHHHHh
Confidence            888888888888888888888888777 56667888888888888888888888777

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.48  E-value=1.5e-12  Score=121.13  Aligned_cols=132  Identities=36%  Similarity=0.401  Sum_probs=118.7

Q ss_pred             cccccCCCCCcHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCCHHHHHHhCCC-----HHHHHHHHhcCc--ccccCC
Q 011183          124 LLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQS-----CEVVKLLLEADA--AIVMLP  196 (491)
Q Consensus       124 ~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~~-----~~iv~~Ll~~~~--~~~~~~  196 (491)
                      .....+..+.+++|.++..+..++++.++..+.++ +..|..|.||||+|+..++     .++++.|++.|+  +..+.+
T Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~  143 (235)
T COG0666          65 HLAARDLDGRLPLHSAASKGDDKIVKLLLASGADV-NAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLR  143 (235)
T ss_pred             ccccCCccccCHHHHHHHcCcHHHHHHHHHcCCCc-ccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCcccc
Confidence            34556777999999999999999999999999998 8999999999999999999     999999999999  678888


Q ss_pred             CCCCChHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCchhhHHHHHHHHHcC
Q 011183          197 DKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCG  261 (491)
Q Consensus       197 d~~G~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~d~~G~t~L~~A~~~~~~~~~~~i~~~L~~~g  261 (491)
                      |..|+||||+|+..|+.++++.|++ .|++++..|..|.|+++.|...+...    +...+.+.+
T Consensus       144 ~~~g~tpl~~A~~~~~~~~~~~ll~-~~~~~~~~~~~g~t~l~~a~~~~~~~----~~~~l~~~~  203 (235)
T COG0666         144 DEDGNTPLHWAALNGDADIVELLLE-AGADPNSRNSYGVTALDPAAKNGRIE----LVKLLLDKG  203 (235)
T ss_pred             CCCCCchhHHHHHcCchHHHHHHHh-cCCCCcccccCCCcchhhhcccchHH----HHHHHHhcC
Confidence            9999999999999999999999999 79999999999999999999877655    444444443

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.43  E-value=9.5e-13  Score=99.46  Aligned_cols=104  Identities=21%  Similarity=0.316  Sum_probs=92.4

Q ss_pred             HHHHHHHcCCHHHHHHHHhCCcccccccCCCCCCHHHHHHhCCCHHHHHHHHhcCcccccCCCCCCChHHHHHHHcCcHH
Q 011183          135 ALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTE  214 (491)
Q Consensus       135 pLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~~~~~  214 (491)
                      -+.+++++|..+-|+.....+-+++..  -.|++|||+|+..|+.+++++|+..|++ ++.+|+.|-|||--|+..|+.+
T Consensus         5 ~~~W~vkNG~~DeVk~~v~~g~nVn~~--~ggR~plhyAAD~GQl~ilefli~iGA~-i~~kDKygITPLLsAvwEGH~~   81 (117)
T KOG4214|consen    5 SVAWNVKNGEIDEVKQSVNEGLNVNEI--YGGRTPLHYAADYGQLSILEFLISIGAN-IQDKDKYGITPLLSAVWEGHRD   81 (117)
T ss_pred             hHhhhhccCcHHHHHHHHHccccHHHH--hCCcccchHhhhcchHHHHHHHHHhccc-cCCccccCCcHHHHHHHHhhHH
Confidence            467888999999999999888766433  2799999999999999999999999999 7889999999999999999999


Q ss_pred             HHHHHhcCCCCCcccccCCCCCHHHHHh
Q 011183          215 IVTELLSLPDTNVNALTRDHKTALDIAE  242 (491)
Q Consensus       215 iv~~Ll~~~g~~~~~~d~~G~t~L~~A~  242 (491)
                      +|++||+ .|++-....-+|.+.++.+.
T Consensus        82 cVklLL~-~GAdrt~~~PdG~~~~eate  108 (117)
T KOG4214|consen   82 CVKLLLQ-NGADRTIHAPDGTALIEATE  108 (117)
T ss_pred             HHHHHHH-cCcccceeCCCchhHHhhcc
Confidence            9999999 89999999999988887654

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.36  E-value=4.8e-12  Score=95.69  Aligned_cols=103  Identities=25%  Similarity=0.369  Sum_probs=78.6

Q ss_pred             CCHHHHHHHcCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcC
Q 011183           30 ETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRG  109 (491)
Q Consensus        30 ~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~~g  109 (491)
                      +--..|++.+|..+-|+..+..|-+  ++. ...|++|||+|+-+|..+++++|+..|+++ +..|..|-|||..|+..|
T Consensus         3 d~~~~W~vkNG~~DeVk~~v~~g~n--Vn~-~~ggR~plhyAAD~GQl~ilefli~iGA~i-~~kDKygITPLLsAvwEG   78 (117)
T KOG4214|consen    3 DMSVAWNVKNGEIDEVKQSVNEGLN--VNE-IYGGRTPLHYAADYGQLSILEFLISIGANI-QDKDKYGITPLLSAVWEG   78 (117)
T ss_pred             chhHhhhhccCcHHHHHHHHHcccc--HHH-HhCCcccchHhhhcchHHHHHHHHHhcccc-CCccccCCcHHHHHHHHh
Confidence            3456788888888888888876633  332 236888888888888888888888888887 677888888888888888


Q ss_pred             CHHHHHHHHhcCCCcccccCCCCCcHHH
Q 011183          110 HTAVVNELLSKDGGLLEISRSNGKNALH  137 (491)
Q Consensus       110 ~~~~v~~LL~~~~~~~~~~d~~g~tpLh  137 (491)
                      |.++|++||+. +++-.....+|.+.+.
T Consensus        79 H~~cVklLL~~-GAdrt~~~PdG~~~~e  105 (117)
T KOG4214|consen   79 HRDCVKLLLQN-GADRTIHAPDGTALIE  105 (117)
T ss_pred             hHHHHHHHHHc-CcccceeCCCchhHHh
Confidence            88888888877 4555556666765544

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.34  E-value=9.4e-13  Score=93.97  Aligned_cols=56  Identities=43%  Similarity=0.512  Sum_probs=30.8

Q ss_pred             HHhcCcccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHH
Q 011183          185 LLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA  241 (491)
Q Consensus       185 Ll~~~~~~~~~~d~~G~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~d~~G~t~L~~A  241 (491)
                      |+++++..++.+|..|+||||+|+..|+.+++++|++ .|+|++.+|..|+||+|+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~-~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQ-NGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHH-CT--TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHH-CcCCCCCCcCCCCCHHHhC
Confidence            4666744478889999999999999999999999995 8999999999999999886

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.32  E-value=4.1e-12  Score=90.09  Aligned_cols=54  Identities=39%  Similarity=0.591  Sum_probs=32.5

Q ss_pred             CCCHHHHHHHcCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHH
Q 011183           29 GETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLL   84 (491)
Q Consensus        29 g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll   84 (491)
                      |.||||+|++.|+.+++++|++.+.+  ++.+|.+|.||||+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~d--in~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGAD--INAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSG--TT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCC--CCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            56677777777777777777766544  4555666777777777777777777664

...

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.30  E-value=6.7e-12  Score=88.98  Aligned_cols=54  Identities=43%  Similarity=0.575  Sum_probs=32.4

Q ss_pred             CCCHHHHHHhCCCHHHHHHHHhcCcccccCCCCCCChHHHHHHHcCcHHHHHHHh
Q 011183          166 GQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELL  220 (491)
Q Consensus       166 g~t~Lh~Aa~~~~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~~~~~iv~~Ll  220 (491)
                      |+||||.|++.|+.+++++|++.+.+ ++.+|.+|+||||+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~d-in~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGAD-INAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSG-TT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            56666777766677777777666666 5556666777777777777776666664

...

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.29  E-value=1.4e-11  Score=132.63  Aligned_cols=101  Identities=29%  Similarity=0.280  Sum_probs=51.2

Q ss_pred             HHHHHHcCCHHHHHHHHhCCcccccccCCCCCCHHHHHHhCCCHHHHHHHHhcCcccccCCCCCCChHHHHHHHcCcHHH
Q 011183          136 LHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEI  215 (491)
Q Consensus       136 Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~~~~~i  215 (491)
                      |+.|+..|+.+.++.|++.++++ +..|..|+||||+|+..|+.+++++|++.|++ ++.+|..|+||||+|+..++.++
T Consensus        86 L~~aa~~G~~~~vk~LL~~Gadi-n~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gad-vn~~d~~G~TpLh~A~~~g~~~i  163 (664)
T PTZ00322         86 LCQLAASGDAVGARILLTGGADP-NCRDYDGRTPLHIACANGHVQVVRVLLEFGAD-PTLLDKDGKTPLELAEENGFREV  163 (664)
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHCCcHHH
Confidence            44555555555555555555544 34455555555555555555555555555554 44455555555555555555555


Q ss_pred             HHHHhcC------CCCCcccccCCCCCHH
Q 011183          216 VTELLSL------PDTNVNALTRDHKTAL  238 (491)
Q Consensus       216 v~~Ll~~------~g~~~~~~d~~G~t~L  238 (491)
                      +++|++.      .|++.+..+..|.+|+
T Consensus       164 v~~Ll~~~~~~~~~ga~~~~~~~~g~~~~  192 (664)
T PTZ00322        164 VQLLSRHSQCHFELGANAKPDSFTGKPPS  192 (664)
T ss_pred             HHHHHhCCCcccccCCCCCccccCCCCcc
Confidence            5555542      1444444444444443

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.28  E-value=1.2e-11  Score=120.99  Aligned_cols=117  Identities=22%  Similarity=0.345  Sum_probs=73.4

Q ss_pred             HHHHHHcCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCCHH
Q 011183           33 LFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTA  112 (491)
Q Consensus        33 Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~~g~~~  112 (491)
                      |.-|+..|.+|+|+..+..-.+  ....|..|-|+||-|+..||.+||++|++.|+++ +..|.+||||||+|+..++..
T Consensus       554 LLDaaLeGEldlVq~~i~ev~D--pSqpNdEGITaLHNAiCaghyeIVkFLi~~ganV-Na~DSdGWTPLHCAASCNnv~  630 (752)
T KOG0515|consen  554 LLDAALEGELDLVQRIIYEVTD--PSQPNDEGITALHNAICAGHYEIVKFLIEFGANV-NAADSDGWTPLHCAASCNNVP  630 (752)
T ss_pred             HHhhhhcchHHHHHHHHHhhcC--CCCCCccchhHHhhhhhcchhHHHHHHHhcCCcc-cCccCCCCchhhhhhhcCchH
Confidence            3456666777777776664433  3556666777777777777777777777777776 566677777777777777777


Q ss_pred             HHHHHHhcCCCcccccCCCCCcHHHHHH--HcCCHHHHHHHH
Q 011183          113 VVNELLSKDGGLLEISRSNGKNALHFAA--RQGHVDVVKALL  152 (491)
Q Consensus       113 ~v~~LL~~~~~~~~~~d~~g~tpLh~A~--~~g~~~iv~~Ll  152 (491)
                      +++.|++.+++.....-.++.|+..-+-  +.|+.++.++|.
T Consensus       631 ~ckqLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~  672 (752)
T KOG0515|consen  631 MCKQLVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLY  672 (752)
T ss_pred             HHHHHHhccceEEeeecccccchhhhcchhhhhHHHHHHHHH
Confidence            7777776665555444555666554432  234555555554

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.25  E-value=4.2e-11  Score=109.20  Aligned_cols=122  Identities=25%  Similarity=0.308  Sum_probs=105.6

Q ss_pred             CCCHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCCHHHHHHhCC
Q 011183           98 NATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQ  177 (491)
Q Consensus        98 g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~  177 (491)
                      -..||.-++..|+.+....||.. ....+..|.+|.+||..|+..|+.++++.|++.++|++..++..+.||||+|+-.|
T Consensus        12 ~~~~Lle~i~Kndt~~a~~LLs~-vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSG   90 (396)
T KOG1710|consen   12 PKSPLLEAIDKNDTEAALALLST-VRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSG   90 (396)
T ss_pred             hhhHHHHHHccCcHHHHHHHHHH-hhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcC
Confidence            45789999999999998888875 44577889999999999999999999999999999998888889999999999999


Q ss_pred             CHHHHHHHHhcCcccccCCCCCCChHHHHHHHcCcHHHHHHHhc
Q 011183          178 SCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLS  221 (491)
Q Consensus       178 ~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~~~~~iv~~Ll~  221 (491)
                      +.++.++|++.|+. ....+.-|+|+-..|+.-|+.++|..+=+
T Consensus        91 n~dvcrllldaGa~-~~~vNsvgrTAaqmAAFVG~H~CV~iINN  133 (396)
T KOG1710|consen   91 NQDVCRLLLDAGAR-MYLVNSVGRTAAQMAAFVGHHECVAIINN  133 (396)
T ss_pred             CchHHHHHHhccCc-cccccchhhhHHHHHHHhcchHHHHHHhc
Confidence            99999999999987 66678889999999999999888876533

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.25  E-value=4.9e-11  Score=128.42  Aligned_cols=105  Identities=27%  Similarity=0.280  Sum_probs=83.7

Q ss_pred             HHHHHHHcCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCCH
Q 011183           32 ALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHT  111 (491)
Q Consensus        32 ~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~~g~~  111 (491)
                      .|+.|+..|+.+.++.|++.|++  ++..|..|.||||+|+..|+.+++++|+++|+++ +..|..|.||||+|+..|+.
T Consensus        85 ~L~~aa~~G~~~~vk~LL~~Gad--in~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadv-n~~d~~G~TpLh~A~~~g~~  161 (664)
T PTZ00322         85 ELCQLAASGDAVGARILLTGGAD--PNCRDYDGRTPLHIACANGHVQVVRVLLEFGADP-TLLDKDGKTPLELAEENGFR  161 (664)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCC--CCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHCCcH
Confidence            37888889999999999988765  5677888999999999999999999999998887 67788889999999999999


Q ss_pred             HHHHHHHhc------CCCcccccCCCCCcHHHHH
Q 011183          112 AVVNELLSK------DGGLLEISRSNGKNALHFA  139 (491)
Q Consensus       112 ~~v~~LL~~------~~~~~~~~d~~g~tpLh~A  139 (491)
                      +++++|+++      .++..+..+..|.+|+..+
T Consensus       162 ~iv~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~~  195 (664)
T PTZ00322        162 EVVQLLSRHSQCHFELGANAKPDSFTGKPPSLED  195 (664)
T ss_pred             HHHHHHHhCCCcccccCCCCCccccCCCCccchh
Confidence            999988876      2333444555666665543

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.24  E-value=6.2e-12  Score=89.72  Aligned_cols=56  Identities=43%  Similarity=0.506  Sum_probs=23.1

Q ss_pred             HHhCCcccccccCCCCCCHHHHHHhCCCHHHHHHHHhcCcccccCCCCCCChHHHHH
Q 011183          151 LLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVA  207 (491)
Q Consensus       151 Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A  207 (491)
                      |+++++...+..|..|+||||+|+..|+.+++++|++.+.+ ++.+|.+|+||||+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d-~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGAD-PNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT---TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCC-CCCCcCCCCCHHHhC
Confidence            34455333456666666666666666666666666666666 666666666666665

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.24  E-value=6e-11  Score=108.19  Aligned_cols=123  Identities=28%  Similarity=0.376  Sum_probs=111.2

Q ss_pred             CCCHHHHHHHcCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHc
Q 011183           29 GETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATR  108 (491)
Q Consensus        29 g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~~  108 (491)
                      -..||..++..|+.+-...||+.  -.+++..|..|.|||.-|+..|+.+++++|++.|++++..++..+.||||+|+.+
T Consensus        12 ~~~~Lle~i~Kndt~~a~~LLs~--vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALS   89 (396)
T KOG1710|consen   12 PKSPLLEAIDKNDTEAALALLST--VRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALS   89 (396)
T ss_pred             hhhHHHHHHccCcHHHHHHHHHH--hhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHc
Confidence            36799999999999999999985  3347889999999999999999999999999999999989999999999999999


Q ss_pred             CCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhC
Q 011183          109 GHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSK  154 (491)
Q Consensus       109 g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~  154 (491)
                      |+.++.+.|++. |+.....+.-|+|+-..|+.-|+.++|..+-++
T Consensus        90 Gn~dvcrlllda-Ga~~~~vNsvgrTAaqmAAFVG~H~CV~iINN~  134 (396)
T KOG1710|consen   90 GNQDVCRLLLDA-GARMYLVNSVGRTAAQMAAFVGHHECVAIINNH  134 (396)
T ss_pred             CCchHHHHHHhc-cCccccccchhhhHHHHHHHhcchHHHHHHhcc
Confidence            999999999988 666788889999999999999999999877655

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.23  E-value=3.1e-11  Score=118.23  Aligned_cols=105  Identities=29%  Similarity=0.350  Sum_probs=78.5

Q ss_pred             HHHHHcCCHHHHHHHHhCCcccccccCCCCCCHHHHHHhCCCHHHHHHHHhcCcccccCCCCCCChHHHHHHHcCcHHHH
Q 011183          137 HFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIV  216 (491)
Q Consensus       137 h~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~~~~~iv  216 (491)
                      .-|+..|.+|+|+.++..-.|. ..-+..|-|+||-|+-.|+.+||++|++.|++ +|..|.+||||||+|+..++..++
T Consensus       555 LDaaLeGEldlVq~~i~ev~Dp-SqpNdEGITaLHNAiCaghyeIVkFLi~~gan-VNa~DSdGWTPLHCAASCNnv~~c  632 (752)
T KOG0515|consen  555 LDAALEGELDLVQRIIYEVTDP-SQPNDEGITALHNAICAGHYEIVKFLIEFGAN-VNAADSDGWTPLHCAASCNNVPMC  632 (752)
T ss_pred             HhhhhcchHHHHHHHHHhhcCC-CCCCccchhHHhhhhhcchhHHHHHHHhcCCc-ccCccCCCCchhhhhhhcCchHHH
Confidence            3467778888888887765555 55677788888888888888888888888888 778888888888888888888888


Q ss_pred             HHHhcCCCCCcc-cccCCCCCHHHHHhhC
Q 011183          217 TELLSLPDTNVN-ALTRDHKTALDIAEGL  244 (491)
Q Consensus       217 ~~Ll~~~g~~~~-~~d~~G~t~L~~A~~~  244 (491)
                      +.|++ .|+.+- ..-.++.||.+-+...
T Consensus       633 kqLVe-~GaavfAsTlSDmeTa~eKCee~  660 (752)
T KOG0515|consen  633 KQLVE-SGAAVFASTLSDMETAAEKCEEM  660 (752)
T ss_pred             HHHHh-ccceEEeeecccccchhhhcchh
Confidence            88888 455443 3455777887776554

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.72  E-value=2.1e-08  Score=99.31  Aligned_cols=93  Identities=29%  Similarity=0.307  Sum_probs=45.9

Q ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCCHHHH
Q 011183           25 VNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVS  104 (491)
Q Consensus        25 ~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~  104 (491)
                      ++.+..|.||+|+..|+-|+|+++|++++.+.+++.+..|.|+||.|+..++..++++|++.|+.+ ...|..|.||-..
T Consensus       895 ~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~vc~~lvdagasl-~ktd~kg~tp~er  973 (1004)
T KOG0782|consen  895 QGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAVCQLLVDAGASL-RKTDSKGKTPQER  973 (1004)
T ss_pred             eCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHHHHHHHhcchhh-eecccCCCChHHH
Confidence            344444555555555555555555555444444444444555555555555555555555555544 3444445555555


Q ss_pred             HHHcCCHHHHHHHH
Q 011183          105 AATRGHTAVVNELL  118 (491)
Q Consensus       105 A~~~g~~~~v~~LL  118 (491)
                      |-+.|+.+...+|-
T Consensus       974 aqqa~d~dlaayle  987 (1004)
T KOG0782|consen  974 AQQAGDPDLAAYLE  987 (1004)
T ss_pred             HHhcCCchHHHHHh
Confidence            55555554444443

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.63  E-value=2.9e-08  Score=102.55  Aligned_cols=87  Identities=23%  Similarity=0.299  Sum_probs=45.4

Q ss_pred             chhhhhccCCCCCCHHHHHHHcCCHHHHHHHHhccCccccccCCC-CCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCC
Q 011183           18 RSSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNR-SGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGP   96 (491)
Q Consensus        18 ~~~~l~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~~-~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~   96 (491)
                      ++...|..|..|+|+||+|+..|..+++++||++|.+  +..+|. .|+||||-|+.+|++|++-.||.+|..+ ...|.
T Consensus        41 c~n~anikD~~GR~alH~~~S~~k~~~l~wLlqhGid--v~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL-~i~Dk  117 (1267)
T KOG0783|consen   41 CQNLANIKDRYGRTALHIAVSENKNSFLRWLLQHGID--VFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSL-RIKDK  117 (1267)
T ss_pred             hhhhhhHHHhhccceeeeeeccchhHHHHHHHhcCce--eeeccccccchHhhHhhhhchHHHHHHHHhcCCce-EEecc
Confidence            3444455555555555555555555555555555444  222322 3555555555555555555555555554 45555


Q ss_pred             CCCCHHHHHHH
Q 011183           97 SNATPLVSAAT  107 (491)
Q Consensus        97 ~g~tpL~~A~~  107 (491)
                      +|.+||..-++
T Consensus       118 eglsplq~~~r  128 (1267)
T KOG0783|consen  118 EGLSPLQFLSR  128 (1267)
T ss_pred             cCCCHHHHHhh
Confidence            55555555443

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.59  E-value=3.6e-08  Score=101.89  Aligned_cols=96  Identities=24%  Similarity=0.286  Sum_probs=72.4

Q ss_pred             HHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCCHHHHHHhCCCHHHHHHHHhcCcccc
Q 011183          114 VNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIV  193 (491)
Q Consensus       114 v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~~~~iv~~Ll~~~~~~~  193 (491)
                      -.++-..+.+..++.|..|+|+||+++..+..+++++|+++|.++.-.....|+||||-|+..|+.+.+-.|+.+|.. .
T Consensus        34 k~F~~k~c~n~anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~S-L  112 (1267)
T KOG0783|consen   34 KGFSEKSCQNLANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRS-L  112 (1267)
T ss_pred             HHHHHHhhhhhhhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCc-e
Confidence            334444555567778888888888888888888888888888887444445688888888888888888888888877 6


Q ss_pred             cCCCCCCChHHHHHHHc
Q 011183          194 MLPDKFGNTALHVATRK  210 (491)
Q Consensus       194 ~~~d~~G~TpLh~A~~~  210 (491)
                      ..+|++|.+||..-++-
T Consensus       113 ~i~Dkeglsplq~~~r~  129 (1267)
T KOG0783|consen  113 RIKDKEGLSPLQFLSRV  129 (1267)
T ss_pred             EEecccCCCHHHHHhhc
Confidence            67788888888776653

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.59  E-value=1.8e-07  Score=92.87  Aligned_cols=92  Identities=30%  Similarity=0.444  Sum_probs=42.8

Q ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHhCCcc-cccccCCCCCCHHHHHHhCCCHHHHHHHHhcCcccccCCCCCCChHHH
Q 011183          127 ISRSNGKNALHFAARQGHVDVVKALLSKDPQ-LARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALH  205 (491)
Q Consensus       127 ~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~-~~~~~d~~g~t~Lh~Aa~~~~~~iv~~Ll~~~~~~~~~~d~~G~TpLh  205 (491)
                      +++.+..+.||+|+..|+-++|++|++++|. +....|..|.|+||.|+-.++-.+.++|++.|+. ....|..|.||-.
T Consensus       894 ~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~vc~~lvdagas-l~ktd~kg~tp~e  972 (1004)
T KOG0782|consen  894 IQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAVCQLLVDAGAS-LRKTDSKGKTPQE  972 (1004)
T ss_pred             eeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHHHHHHHhcchh-heecccCCCChHH
Confidence            3444444455555555555555555544432 2233344444444444444444444444444444 3334444444444


Q ss_pred             HHHHcCcHHHHHHH
Q 011183          206 VATRKKRTEIVTEL  219 (491)
Q Consensus       206 ~A~~~~~~~iv~~L  219 (491)
                      -|-+.|++++..+|
T Consensus       973 raqqa~d~dlaayl  986 (1004)
T KOG0782|consen  973 RAQQAGDPDLAAYL  986 (1004)
T ss_pred             HHHhcCCchHHHHH
Confidence            44444444444444

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.59  E-value=2e-07  Score=91.24  Aligned_cols=85  Identities=25%  Similarity=0.209  Sum_probs=54.0

Q ss_pred             HHHHHhCCCHHHHHHHHhcCcccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCchh
Q 011183          170 LHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEE  249 (491)
Q Consensus       170 Lh~Aa~~~~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~d~~G~t~L~~A~~~~~~~~  249 (491)
                      ||..++.++.+..--|+..|++........|+||||.|++.|+..-+++|+- .|+|+++.|.+|.||+++|...++.+.
T Consensus       137 LhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~v-YGAD~~a~d~~GmtP~~~AR~~gH~~l  215 (669)
T KOG0818|consen  137 LHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAV-YGADPGAQDSSGMTPVDYARQGGHHEL  215 (669)
T ss_pred             HHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhh-ccCCCCCCCCCCCcHHHHHHhcCchHH
Confidence            6666666666666666666666333333456677777777776666666665 677777777777777777766666554


Q ss_pred             hHHHHH
Q 011183          250 ASEIKD  255 (491)
Q Consensus       250 ~~~i~~  255 (491)
                      ...+.+
T Consensus       216 aeRl~e  221 (669)
T KOG0818|consen  216 AERLVE  221 (669)
T ss_pred             HHHHHH
Confidence            444444

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.57  E-value=2.6e-07  Score=90.47  Aligned_cols=94  Identities=26%  Similarity=0.270  Sum_probs=84.3

Q ss_pred             ccCCCCCc------HHHHHHHcCCHHHHHHHHhCCcccccccCCCCCCHHHHHHhCCCHHHHHHHHhcCcccccCCCCCC
Q 011183          127 ISRSNGKN------ALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFG  200 (491)
Q Consensus       127 ~~d~~g~t------pLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~~~~iv~~Ll~~~~~~~~~~d~~G  200 (491)
                      .+|.+|.+      -||.+++.|+.+..-.|+..|++.+...-..|.||||+|++.|+..-+++|+-+|+| ++.+|.+|
T Consensus       122 ~rDdD~~~~~~LsrQLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD-~~a~d~~G  200 (669)
T KOG0818|consen  122 CRDDDSVTAKDLSKQLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGAD-PGAQDSSG  200 (669)
T ss_pred             CCCcchhhHHHHHHHHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCC-CCCCCCCC
Confidence            34555554      489999999999999999999999777778999999999999999999999999999 88999999


Q ss_pred             ChHHHHHHHcCcHHHHHHHhc
Q 011183          201 NTALHVATRKKRTEIVTELLS  221 (491)
Q Consensus       201 ~TpLh~A~~~~~~~iv~~Ll~  221 (491)
                      .||+.+|-..|+-++.+.|++
T Consensus       201 mtP~~~AR~~gH~~laeRl~e  221 (669)
T KOG0818|consen  201 MTPVDYARQGGHHELAERLVE  221 (669)
T ss_pred             CcHHHHHHhcCchHHHHHHHH
Confidence            999999999999988887765

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.53  E-value=1.5e-07  Score=93.45  Aligned_cols=90  Identities=21%  Similarity=0.320  Sum_probs=78.0

Q ss_pred             CHHHHHHHcCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCC
Q 011183           31 TALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGH  110 (491)
Q Consensus        31 T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~~g~  110 (491)
                      -|||+++...+.+-.+.++.......+...|..|.||||+|+..|+.+.++.|+..+++. ..+|..|++|||.|+..|+
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv-~~kN~~gWs~L~EAv~~g~  100 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADV-SIKNNEGWSPLHEAVSTGN  100 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCc-cccccccccHHHHHHHcCC
Confidence            459999998888777776654445567888999999999999999999999999999997 7889999999999999999


Q ss_pred             HHHHHHHHhcC
Q 011183          111 TAVVNELLSKD  121 (491)
Q Consensus       111 ~~~v~~LL~~~  121 (491)
                      .+++..++.+.
T Consensus       101 ~q~i~~vlr~~  111 (560)
T KOG0522|consen  101 EQIITEVLRHL  111 (560)
T ss_pred             HHHHHHHHHHh
Confidence            99999888763

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.51  E-value=1.2e-07  Score=92.47  Aligned_cols=91  Identities=25%  Similarity=0.189  Sum_probs=51.0

Q ss_pred             CCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHc
Q 011183           63 SGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQ  142 (491)
Q Consensus        63 ~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~  142 (491)
                      ++..++.+|+..|+...++.+.-.|.++ ...|.+.+|+||.|+..|+.+++++|++..+.+.+.+|..|+|||.-|...
T Consensus       505 ~~~i~~~~aa~~GD~~alrRf~l~g~D~-~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~F  583 (622)
T KOG0506|consen  505 DTVINVMYAAKNGDLSALRRFALQGMDL-ETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKHF  583 (622)
T ss_pred             cchhhhhhhhhcCCHHHHHHHHHhcccc-cccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhHhc
Confidence            3444555555555555555555555554 445555555555555555555555555555555555555555555555555


Q ss_pred             CCHHHHHHHHhC
Q 011183          143 GHVDVVKALLSK  154 (491)
Q Consensus       143 g~~~iv~~Ll~~  154 (491)
                      +|.+++++|-+.
T Consensus       584 ~h~~v~k~L~~~  595 (622)
T KOG0506|consen  584 KHKEVVKLLEEA  595 (622)
T ss_pred             CcHHHHHHHHHH
Confidence            555555555543

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.47  E-value=1.5e-07  Score=91.85  Aligned_cols=90  Identities=21%  Similarity=0.181  Sum_probs=80.7

Q ss_pred             CCCCCCHHHHHHhCCCHHHHHHHHhcCcccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHh
Q 011183          163 DKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAE  242 (491)
Q Consensus       163 d~~g~t~Lh~Aa~~~~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~d~~G~t~L~~A~  242 (491)
                      +.++...+.+|++.|+...++.+.-.|.| .+.+|.+.+|+||.|+..|+.+++++|++..+++++.+|..|+||||-|.
T Consensus       503 ~~~~~i~~~~aa~~GD~~alrRf~l~g~D-~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~  581 (622)
T KOG0506|consen  503 ENDTVINVMYAAKNGDLSALRRFALQGMD-LETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAK  581 (622)
T ss_pred             cccchhhhhhhhhcCCHHHHHHHHHhccc-ccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhH
Confidence            34566789999999999999999999998 78899999999999999999999999999999999999999999999999


Q ss_pred             hCCCchhhHHH
Q 011183          243 GLPSSEEASEI  253 (491)
Q Consensus       243 ~~~~~~~~~~i  253 (491)
                      ...+.+....+
T Consensus       582 ~F~h~~v~k~L  592 (622)
T KOG0506|consen  582 HFKHKEVVKLL  592 (622)
T ss_pred             hcCcHHHHHHH
Confidence            98876643333

>PF13606 Ank_3: Ankyrin repeat

Probab=98.47  E-value=1.7e-07  Score=57.03  Aligned_cols=29  Identities=45%  Similarity=0.572  Sum_probs=19.0

Q ss_pred             CCChHHHHHHHcCcHHHHHHHhcCCCCCcc
Q 011183          199 FGNTALHVATRKKRTEIVTELLSLPDTNVN  228 (491)
Q Consensus       199 ~G~TpLh~A~~~~~~~iv~~Ll~~~g~~~~  228 (491)
                      +|+||||+|+..|+.+++++|++ .|+|+|
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~-~gadvn   29 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLE-HGADVN   29 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHH-cCCCCC
Confidence            36666666666666666666666 466665

>PF13606 Ank_3: Ankyrin repeat

Probab=98.45  E-value=2.4e-07  Score=56.43  Aligned_cols=27  Identities=44%  Similarity=0.756  Sum_probs=16.4

Q ss_pred             CChHHHHHHHcCcHHHHHHHHhcCCCC
Q 011183           64 GFDPLHIAAVQGHHAIVQVLLDHDPSL   90 (491)
Q Consensus        64 g~TpLh~A~~~g~~~iv~~Ll~~~~~l   90 (491)
                      |+||||+||+.|+.+++++|+++|+++
T Consensus         2 G~T~Lh~A~~~g~~e~v~~Ll~~gadv   28 (30)
T PF13606_consen    2 GNTPLHLAASNGNIEIVKYLLEHGADV   28 (30)
T ss_pred             CCCHHHHHHHhCCHHHHHHHHHcCCCC
Confidence            556666666666666666666665554

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.45  E-value=2.2e-07  Score=58.19  Aligned_cols=33  Identities=36%  Similarity=0.497  Sum_probs=25.3

Q ss_pred             CCChHHHHHHHcCcHHHHHHHhcCCCCCcccccC
Q 011183          199 FGNTALHVATRKKRTEIVTELLSLPDTNVNALTR  232 (491)
Q Consensus       199 ~G~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~d~  232 (491)
                      +|+||||+|+..|+.+++++|++ .|++++.+|+
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~-~ga~~~~~d~   33 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLK-HGADINARDN   33 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHH-TTSCTTCBCT
T ss_pred             CcccHHHHHHHHHHHHHHHHHHH-CcCCCCCCCC
Confidence            47788888888888888888887 7788777663

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.29  E-value=1.6e-06  Score=86.14  Aligned_cols=76  Identities=30%  Similarity=0.460  Sum_probs=66.7

Q ss_pred             hHHHHHhhchhhhhccCCCCCCHHHHHHHcCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhcC
Q 011183           10 FDTEVAEIRSSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHD   87 (491)
Q Consensus        10 ~~~~~~~~~~~~l~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~   87 (491)
                      +..+........++.+|..|+||||+|+..|+.+.++.|+..+++  +..+|..|++|||.|+..|+.+++..++.+.
T Consensus        36 l~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Ad--v~~kN~~gWs~L~EAv~~g~~q~i~~vlr~~  111 (560)
T KOG0522|consen   36 LEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGAD--VSIKNNEGWSPLHEAVSTGNEQIITEVLRHL  111 (560)
T ss_pred             HHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCC--ccccccccccHHHHHHHcCCHHHHHHHHHHh
Confidence            444444446678999999999999999999999999999998876  6889999999999999999999999988864

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.24  E-value=3.9e-06  Score=88.18  Aligned_cols=128  Identities=20%  Similarity=0.271  Sum_probs=104.2

Q ss_pred             hccCCCCCCHHHHHHHcCCHHHHHHHHhccCc--cccccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCC
Q 011183           23 NEVNELGETALFTAADKGHIEVVNELLKYSTK--EGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNAT  100 (491)
Q Consensus        23 ~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~--~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~t  100 (491)
                      ......++--...|++.|+.-.|+..++....  .+++..|.-|+++|++|+.+.|.+++++|++++...        ..
T Consensus        19 ~~~l~~~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~--------gd   90 (822)
T KOG3609|consen   19 DADLNEGEKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE--------GD   90 (822)
T ss_pred             ccccchhhHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc--------ch
Confidence            34455566678899999999999999987554  457888999999999999999999999999986443        36


Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCcc---------cccCCCCCcHHHHHHHcCCHHHHHHHHhCCccc
Q 011183          101 PLVSAATRGHTAVVNELLSKDGGLL---------EISRSNGKNALHFAARQGHVDVVKALLSKDPQL  158 (491)
Q Consensus       101 pL~~A~~~g~~~~v~~LL~~~~~~~---------~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~  158 (491)
                      +|.+|+..|..++++.++.+.....         ...=..+.|||.+||..+++||++.|++++..+
T Consensus        91 ALL~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i  157 (822)
T KOG3609|consen   91 ALLLAIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCI  157 (822)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCC
Confidence            8999999999999999998633210         011234789999999999999999999998765

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.22  E-value=1.8e-06  Score=54.03  Aligned_cols=27  Identities=48%  Similarity=0.806  Sum_probs=15.0

Q ss_pred             CChHHHHHHHcCcHHHHHHHHhcCCCC
Q 011183           64 GFDPLHIAAVQGHHAIVQVLLDHDPSL   90 (491)
Q Consensus        64 g~TpLh~A~~~g~~~iv~~Ll~~~~~l   90 (491)
                      |.||||+|+..|+.+++++|+++|+++
T Consensus         2 G~TpLh~A~~~~~~~~v~~Ll~~ga~~   28 (33)
T PF00023_consen    2 GNTPLHYAAQRGHPDIVKLLLKHGADI   28 (33)
T ss_dssp             SBBHHHHHHHTTCHHHHHHHHHTTSCT
T ss_pred             cccHHHHHHHHHHHHHHHHHHHCcCCC
Confidence            455555555555555555555555554

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.18  E-value=4.6e-06  Score=83.47  Aligned_cols=87  Identities=22%  Similarity=0.285  Sum_probs=57.5

Q ss_pred             HHHHHHcCCHHHHHHHHhccCccccc--cCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCC
Q 011183           33 LFTAADKGHIEVVNELLKYSTKEGLT--RKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGH  110 (491)
Q Consensus        33 Lh~Aa~~g~~~~v~~Ll~~~~~~~l~--~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~~g~  110 (491)
                      |.-|+...++..+-.||.+|..+.++  ..+.+|+|+||+||+.|+..+.++|+=+|.+. ..+|..|+|+|.||-+.|.
T Consensus       628 Ll~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv-~~rda~g~t~l~yar~a~s  706 (749)
T KOG0705|consen  628 LLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDV-MARDAHGRTALFYARQAGS  706 (749)
T ss_pred             HHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccc-eecccCCchhhhhHhhccc
Confidence            55566666677777777666543322  34445667777777777777777777666665 5666777777777777777


Q ss_pred             HHHHHHHHhc
Q 011183          111 TAVVNELLSK  120 (491)
Q Consensus       111 ~~~v~~LL~~  120 (491)
                      .+++..|++.
T Consensus       707 qec~d~llq~  716 (749)
T KOG0705|consen  707 QECIDVLLQY  716 (749)
T ss_pred             HHHHHHHHHc
Confidence            7777777765

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.13  E-value=0.0007  Score=71.72  Aligned_cols=122  Identities=20%  Similarity=0.174  Sum_probs=96.2

Q ss_pred             CChHHHHHHHcCcHHHHHHHHhcCCC---CcccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHH
Q 011183           64 GFDPLHIAAVQGHHAIVQVLLDHDPS---LSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAA  140 (491)
Q Consensus        64 g~TpLh~A~~~g~~~iv~~Ll~~~~~---l~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~  140 (491)
                      +.--.-.|+.+|+...|+..++....   ..+..|.-|+++|+.|..+.+.|+.++|++....   .     ..+|.+|+
T Consensus        25 ~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~---~-----gdALL~aI   96 (822)
T KOG3609|consen   25 GEKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSE---E-----GDALLLAI   96 (822)
T ss_pred             hhHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCccc---c-----chHHHHHH
Confidence            44567789999999999999987544   2367888999999999999999999999987321   1     46899999


Q ss_pred             HcCCHHHHHHHHhCCcccc---------cccCCCCCCHHHHHHhCCCHHHHHHHHhcCcccc
Q 011183          141 RQGHVDVVKALLSKDPQLA---------RRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIV  193 (491)
Q Consensus       141 ~~g~~~iv~~Ll~~~~~~~---------~~~d~~g~t~Lh~Aa~~~~~~iv~~Ll~~~~~~~  193 (491)
                      ..|.+++|+.++.+.....         ...-..+-|||.+||..++.|+++.|+++|+.+.
T Consensus        97 ~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~  158 (822)
T KOG3609|consen   97 AVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIP  158 (822)
T ss_pred             HHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCC
Confidence            9999999999998743321         1112346688999999999999999998888743

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.03  E-value=1.3e-05  Score=80.31  Aligned_cols=91  Identities=29%  Similarity=0.233  Sum_probs=61.9

Q ss_pred             HHHHHHhCCCHHHHHHHHhcCcc---cccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCC
Q 011183          169 ALHMAVKGQSCEVVKLLLEADAA---IVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLP  245 (491)
Q Consensus       169 ~Lh~Aa~~~~~~iv~~Ll~~~~~---~~~~~d~~G~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~d~~G~t~L~~A~~~~  245 (491)
                      -|.-|+...+...+-+|+.+|..   .....+.+|.|+||+|+..|+..+.++|+- .|+|+.++|.+|+|+|.+|.+.+
T Consensus       627 qLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiW-yg~dv~~rda~g~t~l~yar~a~  705 (749)
T KOG0705|consen  627 QLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIW-YGVDVMARDAHGRTALFYARQAG  705 (749)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHH-hCccceecccCCchhhhhHhhcc
Confidence            35555555666666777766642   122345567788888888888877777776 78888888888888888877654


Q ss_pred             CchhhHHHHHHHHHcCccc
Q 011183          246 SSEEASEIKDCLARCGAVR  264 (491)
Q Consensus       246 ~~~~~~~i~~~L~~~ga~~  264 (491)
                      .    ++..+.|+++|...
T Consensus       706 s----qec~d~llq~gcp~  720 (749)
T KOG0705|consen  706 S----QECIDVLLQYGCPD  720 (749)
T ss_pred             c----HHHHHHHHHcCCCc
Confidence            3    45777777777654

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.94  E-value=1.7e-05  Score=85.34  Aligned_cols=127  Identities=19%  Similarity=0.136  Sum_probs=60.6

Q ss_pred             CCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHH
Q 011183           60 KNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFA  139 (491)
Q Consensus        60 ~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A  139 (491)
                      .+..|.|.+|+++..+..-.++.+++.........|..|...+|+ |..++.+..-+++...+..++.+|..|+||||+|
T Consensus       570 ~~~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hf-ca~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~wA  648 (975)
T KOG0520|consen  570 VNFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHF-CAALGYEWAFLPISADGVAIDIRDRNGWTPLHWA  648 (975)
T ss_pred             CCCcchHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhH-hhhcCCceeEEEEeecccccccccCCCCcccchH
Confidence            344455555555555555555555554111123334444444444 3344444444444444555555555555555555


Q ss_pred             HHcCCHHHHHHHHhCCcccccc-----cCCCCCCHHHHHHhCCCHHHHHHHHh
Q 011183          140 ARQGHVDVVKALLSKDPQLARR-----TDKKGQTALHMAVKGQSCEVVKLLLE  187 (491)
Q Consensus       140 ~~~g~~~iv~~Ll~~~~~~~~~-----~d~~g~t~Lh~Aa~~~~~~iv~~Ll~  187 (491)
                      +..|+..++..|.+.+.+....     .+-.|.|+-.+|..+|+..+.-+|-+
T Consensus       649 a~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse  701 (975)
T KOG0520|consen  649 AFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSE  701 (975)
T ss_pred             hhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhh
Confidence            5555555555555443332111     11234444455554554444444433

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.93  E-value=1.8e-05  Score=75.52  Aligned_cols=84  Identities=21%  Similarity=0.284  Sum_probs=63.7

Q ss_pred             chhhhhccCCCCCCHHHHHHHcCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCC
Q 011183           18 RSSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPS   97 (491)
Q Consensus        18 ~~~~l~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~   97 (491)
                      +++.+-..+..|  -|+.|++.|+++.|++|++.|.+  ++..|+...+||.+|+..||.++|++|+++|+-- .....+
T Consensus        27 ~~s~~~~~~~f~--elceacR~GD~d~v~~LVetgvn--VN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC-~rdtf~  101 (516)
T KOG0511|consen   27 KPSVPLKKVPFG--ELCEACRAGDVDRVRYLVETGVN--VNAVDRFDSSPLYLASLCGHEDVVKLLLENGAIC-SRDTFD  101 (516)
T ss_pred             CcccccccCchH--HHHHHhhcccHHHHHHHHHhCCC--cchhhcccccHHHHHHHcCcHHHHHHHHHcCCcc-cccccC
Confidence            344444444433  68999999999999999997655  7889999999999999999999999999999875 233344


Q ss_pred             CCCHHHHHHH
Q 011183           98 NATPLVSAAT  107 (491)
Q Consensus        98 g~tpL~~A~~  107 (491)
                      |.-. |+++.
T Consensus       102 G~RC-~YgaL  110 (516)
T KOG0511|consen  102 GDRC-HYGAL  110 (516)
T ss_pred             cchh-hhhhh
Confidence            5444 44443

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.81  E-value=2.5e-05  Score=84.05  Aligned_cols=122  Identities=22%  Similarity=0.207  Sum_probs=91.8

Q ss_pred             cccCCCCCcHHHHHHHcCCHHHHHHHHhC-CcccccccCCCCCCHHHHHHhCCCHHHHHHHHhcCcccccCCCCCCChHH
Q 011183          126 EISRSNGKNALHFAARQGHVDVVKALLSK-DPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTAL  204 (491)
Q Consensus       126 ~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~-~~~~~~~~d~~g~t~Lh~Aa~~~~~~iv~~Ll~~~~~~~~~~d~~G~TpL  204 (491)
                      ......|++.+|+++..++.-+++.+++. +... ...|.+|...+|+++ .+..+..-+++......++.+|..|+|||
T Consensus       568 ~~~~~r~~lllhL~a~~lyawLie~~~e~~~~~~-~eld~d~qgV~hfca-~lg~ewA~ll~~~~~~ai~i~D~~G~tpL  645 (975)
T KOG0520|consen  568 SSVNFRDMLLLHLLAELLYAWLIEKVIEWAGSGD-LELDRDGQGVIHFCA-ALGYEWAFLPISADGVAIDIRDRNGWTPL  645 (975)
T ss_pred             ccCCCcchHHHHHHHHHhHHHHHHHHhcccccCc-hhhcccCCChhhHhh-hcCCceeEEEEeecccccccccCCCCccc
Confidence            34456788999999999999999999986 3333 456788888888844 45667666666666555888999999999


Q ss_pred             HHHHHcCcHHHHHHHhcCCCC------CcccccCCCCCHHHHHhhCCCchhh
Q 011183          205 HVATRKKRTEIVTELLSLPDT------NVNALTRDHKTALDIAEGLPSSEEA  250 (491)
Q Consensus       205 h~A~~~~~~~iv~~Ll~~~g~------~~~~~d~~G~t~L~~A~~~~~~~~~  250 (491)
                      |+|+..|+..++..|+. .|+      |++-.+-.|.|+-++|...+.....
T Consensus       646 ~wAa~~G~e~l~a~l~~-lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia  696 (975)
T KOG0520|consen  646 HWAAFRGREKLVASLIE-LGADPGAVTDPSPETPGGKTAADLARANGHKGIA  696 (975)
T ss_pred             chHhhcCHHHHHHHHHH-hccccccccCCCCCCCCCCchhhhhhcccccchH
Confidence            99999999999998886 333      3444556788999998877766543

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=97.77  E-value=1.9e-05  Score=85.36  Aligned_cols=81  Identities=37%  Similarity=0.378  Sum_probs=71.9

Q ss_pred             CCCCCHHHHHHhCCCHHHHHHHHhcCcccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhh
Q 011183          164 KKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEG  243 (491)
Q Consensus       164 ~~g~t~Lh~Aa~~~~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~d~~G~t~L~~A~~  243 (491)
                      ..|.|+||.|+..+..-+.++|++.|++ +|..|..|+||||.+...|+...+..+++ .|+++++.|.+|++|+++|..
T Consensus       654 ~~~~s~lh~a~~~~~~~~~e~ll~~ga~-vn~~d~~g~~plh~~~~~g~~~~~~~ll~-~~a~~~a~~~~~~~~l~~a~~  731 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGDSGAVELLLQNGAD-VNALDSKGRTPLHHATASGHTSIACLLLK-RGADPNAFDPDGKLPLDIAME  731 (785)
T ss_pred             hcccchhhhhhccchHHHHHHHHhcCCc-chhhhccCCCcchhhhhhcccchhhhhcc-ccccccccCccCcchhhHHhh
Confidence            4678899999999999999999999998 88899999999999999999999988888 899999999999999999977


Q ss_pred             CCC
Q 011183          244 LPS  246 (491)
Q Consensus       244 ~~~  246 (491)
                      ..+
T Consensus       732 ~~~  734 (785)
T KOG0521|consen  732 AAN  734 (785)
T ss_pred             hcc
Confidence            633

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.75  E-value=7.3e-05  Score=71.50  Aligned_cols=124  Identities=25%  Similarity=0.349  Sum_probs=81.4

Q ss_pred             ChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCC
Q 011183           65 FDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGH  144 (491)
Q Consensus        65 ~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~  144 (491)
                      .--|..||+.|+.+.|+.|++.|.++ +..|....+||.+|+..||.+++++||++ |+.......+|.-+ |+++.+.+
T Consensus        37 f~elceacR~GD~d~v~~LVetgvnV-N~vD~fD~spL~lAsLcGHe~vvklLLen-GAiC~rdtf~G~RC-~YgaLnd~  113 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVETGVNV-NAVDRFDSSPLYLASLCGHEDVVKLLLEN-GAICSRDTFDGDRC-HYGALNDR  113 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHHhCCCc-chhhcccccHHHHHHHcCcHHHHHHHHHc-CCcccccccCcchh-hhhhhhHH
Confidence            34589999999999999999999887 78899999999999999999999999998 55444444456554 44444332


Q ss_pred             -------HHHHHHHHhCCcccccccCCCCCCHHHH------HHhCC-CHHHHHHHHhcCcc
Q 011183          145 -------VDVVKALLSKDPQLARRTDKKGQTALHM------AVKGQ-SCEVVKLLLEADAA  191 (491)
Q Consensus       145 -------~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~------Aa~~~-~~~iv~~Ll~~~~~  191 (491)
                             +++.+.+=.+.|-.......-..|.||+      +.+.| ..++-++|++.+..
T Consensus       114 IR~mllsydi~KA~d~~qP~aahi~s~l~dt~l~~~~di~f~~q~g~~f~ahkfll~arSs  174 (516)
T KOG0511|consen  114 IRRMLLSYDILKAFDARQPPAAHIQSSLRDTFLGCCHDIDFLQQEGANFDAHKFLLEARSS  174 (516)
T ss_pred             HHHHHHHHHHHHHhhccCCcchHHHHHhhccccccccchHHHhhccccccHHHHHHHhhhc
Confidence                   2344444344443322222233344433      23333 34566677776654

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=97.70  E-value=9.5e-05  Score=64.30  Aligned_cols=66  Identities=30%  Similarity=0.371  Sum_probs=39.8

Q ss_pred             hhhccCCCCCCHHHHHHHcCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhcC
Q 011183           21 VVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHD   87 (491)
Q Consensus        21 ~l~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~   87 (491)
                      ++|.+|..|+|||.+|+..|+.+.+.+|+..|.. .+...|..|.+++.+|-+.|..++++.|.+..
T Consensus         4 ~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a-~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~   69 (223)
T KOG2384|consen    4 NINARDAFGWTALMCAAMEGSNEAVSYLLGRGVA-FVGVTDESSLDAAQLAEKGGAQAFVHSLFEND   69 (223)
T ss_pred             CccchhhhcchHHHHHhhhcchhHHHHHhccCcc-cccccccccchHHHHHHhcChHHHHHHHHHHh
Confidence            4566666666666666666666666666665521 14455666666666666666666666666553

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=97.69  E-value=5.6e-05  Score=81.81  Aligned_cols=116  Identities=23%  Similarity=0.291  Sum_probs=83.4

Q ss_pred             CCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHH
Q 011183           60 KNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFA  139 (491)
Q Consensus        60 ~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A  139 (491)
                      .+..+.+++..|....+...+.+..         .-..|.|+||.|+..|..-+.++||+. +++++..|..|++|+|.+
T Consensus       627 ~~~~~~~~~~~~~~~~~~~~~n~~~---------~~~~~~s~lh~a~~~~~~~~~e~ll~~-ga~vn~~d~~g~~plh~~  696 (785)
T KOG0521|consen  627 ASSDGECLPRIATALAHGCCENWPV---------VLCIGCSLLHVAVGTGDSGAVELLLQN-GADVNALDSKGRTPLHHA  696 (785)
T ss_pred             hccCccchhhhhhhhcchhhhccch---------hhhcccchhhhhhccchHHHHHHHHhc-CCcchhhhccCCCcchhh
Confidence            3445666776665544443332221         224577888888888888888888877 556888888888888888


Q ss_pred             HHcCCHHHHHHHHhCCcccccccCCCCCCHHHHHHhCCCHHHHHHHH
Q 011183          140 ARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLL  186 (491)
Q Consensus       140 ~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~~~~iv~~Ll  186 (491)
                      ...|+...+..+++++++. +..|.+|.+||++|....+.+++-++.
T Consensus       697 ~~~g~~~~~~~ll~~~a~~-~a~~~~~~~~l~~a~~~~~~d~~~l~~  742 (785)
T KOG0521|consen  697 TASGHTSIACLLLKRGADP-NAFDPDGKLPLDIAMEAANADIVLLLR  742 (785)
T ss_pred             hhhcccchhhhhccccccc-cccCccCcchhhHHhhhccccHHHHHh
Confidence            8888888888888888876 677888888888887765555554443

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=97.59  E-value=0.00019  Score=62.44  Aligned_cols=67  Identities=24%  Similarity=0.335  Sum_probs=59.0

Q ss_pred             ccccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhcCC
Q 011183           56 GLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDG  122 (491)
Q Consensus        56 ~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~  122 (491)
                      +++..|..|+|||+.|+.-|+.+.+.+|+++|.......|..|.+.+.+|-..|+.+++..|.+...
T Consensus         4 ~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~   70 (223)
T KOG2384|consen    4 NINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDR   70 (223)
T ss_pred             CccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhc
Confidence            4788899999999999999999999999999966668889999999999999999999998887644

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=96.75  E-value=0.0053  Score=61.22  Aligned_cols=65  Identities=15%  Similarity=0.110  Sum_probs=52.6

Q ss_pred             CCHHHHHHHHhcCccc-----ccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHh
Q 011183          177 QSCEVVKLLLEADAAI-----VMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAE  242 (491)
Q Consensus       177 ~~~~iv~~Ll~~~~~~-----~~~~d~~G~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~d~~G~t~L~~A~  242 (491)
                      .-...+++|.+++.+.     +...|..-.|+||+|+..|..++|.++|+ .|+|+.++|..|+||.+++.
T Consensus       402 ~~p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Le-eg~Dp~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  402 PEPDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLE-EGCDPSTKDGAGRTPYSLSA  471 (591)
T ss_pred             CchhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHH-hcCCchhcccCCCCcccccc
Confidence            3356777777776652     12234556799999999999999999999 68999999999999999876

>smart00248 ANK ankyrin repeats

Probab=96.26  E-value=0.0071  Score=35.08  Aligned_cols=26  Identities=42%  Similarity=0.735  Sum_probs=14.2

Q ss_pred             CChHHHHHHHcCcHHHHHHHHhcCCC
Q 011183           64 GFDPLHIAAVQGHHAIVQVLLDHDPS   89 (491)
Q Consensus        64 g~TpLh~A~~~g~~~iv~~Ll~~~~~   89 (491)
                      |.||+|+|+..++.++++.|++++.+
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~   27 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGAD   27 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            44555555555555555555555443

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>smart00248 ANK ankyrin repeats

Probab=96.08  E-value=0.01  Score=34.39  Aligned_cols=27  Identities=41%  Similarity=0.539  Sum_probs=24.3

Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHhccCc
Q 011183           28 LGETALFTAADKGHIEVVNELLKYSTK   54 (491)
Q Consensus        28 ~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~   54 (491)
                      +|.||+|+|+..|+.++++.|++.+.+
T Consensus         1 ~~~~~l~~~~~~~~~~~~~~ll~~~~~   27 (30)
T smart00248        1 DGRTPLHLAAENGNLEVVKLLLDKGAD   27 (30)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            478999999999999999999997653

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=94.61  E-value=0.059  Score=54.05  Aligned_cols=41  Identities=22%  Similarity=0.226  Sum_probs=23.0

Q ss_pred             CCHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHH
Q 011183           99 ATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAA  140 (491)
Q Consensus        99 ~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~  140 (491)
                      .|+||+|+.+|..+++.+||+.+ .++...|..|+||..++.
T Consensus       431 sT~LH~aa~qg~~k~v~~~Leeg-~Dp~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  431 STFLHYAAAQGARKCVKYFLEEG-CDPSTKDGAGRTPYSLSA  471 (591)
T ss_pred             chHHHHHHhcchHHHHHHHHHhc-CCchhcccCCCCcccccc
Confidence            35555555555555555555553 455555555555555554

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=92.79  E-value=0.69  Score=41.98  Aligned_cols=122  Identities=16%  Similarity=0.195  Sum_probs=76.5

Q ss_pred             CHHHHHHHcCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCC
Q 011183           31 TALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGH  110 (491)
Q Consensus        31 T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~~g~  110 (491)
                      -.|-.|+..-+.+-+..++....         .-.+++-+|+..+..+++.+|+.+..-  ..+|        .|-....
T Consensus       155 isledAV~AsN~~~i~~~VtdKk---------dA~~Am~~si~~~K~dva~~lls~f~f--t~~d--------v~~~~~~  215 (284)
T PF06128_consen  155 ISLEDAVKASNYEEISNLVTDKK---------DAHQAMWLSIGNAKEDVALYLLSKFNF--TKQD--------VASMEKE  215 (284)
T ss_pred             ccHHHHHhhcCHHHHHHHhcchH---------HHHHHHHHHhcccHHHHHHHHHhhcce--ecch--------hhhcCcc
Confidence            34566777777776666654221         134777788877888888888775321  1111        1111112


Q ss_pred             HHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhCCccccc---ccCCCCCCHHHHHHhCCCHHHHHHHHh
Q 011183          111 TAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLAR---RTDKKGQTALHMAVKGQSCEVVKLLLE  187 (491)
Q Consensus       111 ~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~---~~d~~g~t~Lh~Aa~~~~~~iv~~Ll~  187 (491)
                      ..-++++|...++                    +..+++.++++|--..+   ..-+.|.|.|.-|.+.++.+++..|++
T Consensus       216 ~ydieY~LS~h~a--------------------~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk  275 (284)
T PF06128_consen  216 LYDIEYLLSEHSA--------------------SYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLK  275 (284)
T ss_pred             hhhHHHHHhhcCC--------------------cHHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHH
Confidence            3345566655443                    35677888887643222   345678899999999999999999999


Q ss_pred             cCcc
Q 011183          188 ADAA  191 (491)
Q Consensus       188 ~~~~  191 (491)
                      +|+-
T Consensus       276 ~GA~  279 (284)
T PF06128_consen  276 YGAI  279 (284)
T ss_pred             cCcc
Confidence            8874

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=92.09  E-value=1.5  Score=38.63  Aligned_cols=71  Identities=10%  Similarity=0.097  Sum_probs=35.8

Q ss_pred             HHHHHHHcCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCCH
Q 011183           32 ALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHT  111 (491)
Q Consensus        32 ~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~~g~~  111 (491)
                      .|.-|+..+-+.+++..-+...+     .-...++..-.||+..+.|+|+|+-+   ++ ..  .+-.+-+..|....+.
T Consensus        49 Ll~HAVk~nmL~ILqkyke~L~~-----~~~~~q~LFElAC~~qkydiV~WI~q---nL-~i--~~~~~iFdIA~~~kDl  117 (192)
T PF03158_consen   49 LLYHAVKYNMLSILQKYKEDLEN-----ERYLNQELFELACEEQKYDIVKWIGQ---NL-HI--YNPEDIFDIAFAKKDL  117 (192)
T ss_pred             HHHHHHHcCcHHHHHHHHHHhhc-----chhHHHHHHHHHHHHccccHHHHHhh---cc-CC--CCchhhhhhhhhccch
Confidence            45556666666666655543221     11234556666666666666666622   21 11  1223445556555555


Q ss_pred             HH
Q 011183          112 AV  113 (491)
Q Consensus       112 ~~  113 (491)
                      +.
T Consensus       118 sL  119 (192)
T PF03158_consen  118 SL  119 (192)
T ss_pred             hH
Confidence            44

These proteins may be involved in promoting survival of infected macrophages [].

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=91.88  E-value=1.8  Score=38.25  Aligned_cols=137  Identities=14%  Similarity=0.035  Sum_probs=90.2

Q ss_pred             HHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHH
Q 011183           67 PLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVD  146 (491)
Q Consensus        67 pLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~  146 (491)
                      .|.-|+..+...+.+..-+.-.+-    -...++-+..||+..+.|+|+++-+.-.    .  .+-.+.+-.|....+.+
T Consensus        49 Ll~HAVk~nmL~ILqkyke~L~~~----~~~~q~LFElAC~~qkydiV~WI~qnL~----i--~~~~~iFdIA~~~kDls  118 (192)
T PF03158_consen   49 LLYHAVKYNMLSILQKYKEDLENE----RYLNQELFELACEEQKYDIVKWIGQNLH----I--YNPEDIFDIAFAKKDLS  118 (192)
T ss_pred             HHHHHHHcCcHHHHHHHHHHhhcc----hhHHHHHHHHHHHHccccHHHHHhhccC----C--CCchhhhhhhhhccchh
Confidence            456688888888887776642211    1345678889999999999999954421    1  22345677788887776


Q ss_pred             HHH----HHHhCCcccccccCC--CCCCHHHHHHhCCCHHHHHHHHhcCcccccCCCCCCChHHHHHHHcCcHHHHHHHh
Q 011183          147 VVK----ALLSKDPQLARRTDK--KGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELL  220 (491)
Q Consensus       147 iv~----~Ll~~~~~~~~~~d~--~g~t~Lh~Aa~~~~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~~~~~iv~~Ll  220 (491)
                      +..    .+.++.... ...|.  --..-|..|+.+|-...+...+++|.+.       .+++|-.|+...+..++.+++
T Consensus       119 LyslGY~l~~~~~~~~-~~~d~~~ll~~hl~~a~~kgll~F~letlkygg~~-------~~~vls~Av~ynhRkIL~yfi  190 (192)
T PF03158_consen  119 LYSLGYKLLFNRMMSE-HNEDPTSLLTQHLEKAAAKGLLPFVLETLKYGGNV-------DIIVLSQAVKYNHRKILDYFI  190 (192)
T ss_pred             HHHHHHHHHHhhcccc-cccCHHHHHHHHHHHHHHCCCHHHHHHHHHcCCcc-------cHHHHHHHHHhhHHHHHHHhh
Confidence            532    233331111 00000  0012468899999999999999998873       138999999999999988876


Q ss_pred             c
Q 011183          221 S  221 (491)
Q Consensus       221 ~  221 (491)
                      .
T Consensus       191 ~  191 (192)
T PF03158_consen  191 R  191 (192)
T ss_pred             c
Confidence            5

These proteins may be involved in promoting survival of infected macrophages [].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=91.23  E-value=0.96  Score=41.10  Aligned_cols=49  Identities=22%  Similarity=0.219  Sum_probs=40.6

Q ss_pred             CCHHHHHHHHhcCcccccC---CCCCCChHHHHHHHcCcHHHHHHHhcCCCCC
Q 011183          177 QSCEVVKLLLEADAAIVML---PDKFGNTALHVATRKKRTEIVTELLSLPDTN  226 (491)
Q Consensus       177 ~~~~iv~~Ll~~~~~~~~~---~d~~G~TpLh~A~~~~~~~iv~~Ll~~~g~~  226 (491)
                      .+..++++.++.|-..+|.   +-+.|.|.|.-|.++++.+++..||+ .|+-
T Consensus       228 a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk-~GA~  279 (284)
T PF06128_consen  228 ASYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLK-YGAI  279 (284)
T ss_pred             CcHHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHH-cCcc
Confidence            3568899999988655553   45679999999999999999999999 6763

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=88.16  E-value=0.86  Score=34.27  Aligned_cols=46  Identities=26%  Similarity=0.260  Sum_probs=27.4

Q ss_pred             HHHHHHHcCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhc
Q 011183           32 ALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDH   86 (491)
Q Consensus        32 ~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~   86 (491)
                      -+..|+..|+.|+++.+++.+..         ....+..|+...+.+++++|+++
T Consensus         9 tl~~Ai~GGN~eII~~c~~~~~~---------~~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    9 TLEYAIIGGNFEIINICLKKNKP---------DNDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHhCCCHHHHHHHHHHhcc---------HHHHHHHHHHHhhHHHHHHHHHh
Confidence            45666666666666666653211         13456666666666666666664

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=84.01  E-value=1.7  Score=32.63  Aligned_cols=45  Identities=27%  Similarity=0.456  Sum_probs=24.2

Q ss_pred             HHHHHHhCCCHHHHHHHHhcCcccccCCCCCCChHHHHHHHcCcHHHHHHHhc
Q 011183          169 ALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLS  221 (491)
Q Consensus       169 ~Lh~Aa~~~~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~~~~~iv~~Ll~  221 (491)
                      .+..|+..|+.|+++.+++.+..     +   ...+..|+...+.+++++|++
T Consensus         9 tl~~Ai~GGN~eII~~c~~~~~~-----~---~~~l~~AI~~H~n~i~~~l~~   53 (76)
T PF11929_consen    9 TLEYAIIGGNFEIINICLKKNKP-----D---NDCLEYAIKSHNNEIADWLIE   53 (76)
T ss_pred             HHHHHHhCCCHHHHHHHHHHhcc-----H---HHHHHHHHHHhhHHHHHHHHH
Confidence            35556666666666655543311     1   334556666666666666655

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	491
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		9e-17
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		5e-10
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		3e-16
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		4e-13
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		1e-15
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		2e-06
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-15
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-13
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-14
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-14
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		6e-13
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		3e-12
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		7e-13
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		9e-12
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		1e-12
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		4e-12
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		8e-12
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		7e-08
2xee_A	157	Structural Determinants For Improved Thermal Stabil		7e-12
2xee_A	157	Structural Determinants For Improved Thermal Stabil		6e-11
2xee_A	157	Structural Determinants For Improved Thermal Stabil		6e-08
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		1e-11
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		3e-08
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		1e-11
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		3e-10
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		1e-04
4b93_B	269	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		4e-11
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		4e-11
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		8e-10
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		6e-11
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		1e-09
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		4e-05
3eu9_A	240	The Ankyrin Repeat Domain Of Huntingtin Interacting		6e-11
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		6e-11
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		6e-08
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		9e-11
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		9e-10
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		9e-11
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		4e-07
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		1e-10
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		2e-10
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		8e-05
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		2e-10
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		6e-08
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		9e-06
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		2e-10
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		2e-07
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		2e-10
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		2e-09
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		1e-05
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		3e-10
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		5e-10
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		8e-08
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		1e-05
1uoh_A	226	Human Gankyrin Length = 226		5e-10
1uoh_A	226	Human Gankyrin Length = 226		8e-08
1uoh_A	226	Human Gankyrin Length = 226		2e-05
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		7e-10
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		4e-08
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		9e-10
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		5e-08
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		1e-09
1ixv_A	231	Crystal Structure Analysis Of Homolog Of Oncoprotei		2e-09
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		2e-09
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		3e-09
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		1e-08
2dzn_A	228	Crystal Structure Analysis Of Yeast Nas6p Complexed		2e-09
1wg0_A	243	Structural Comparison Of Nas6p Protein Structures I		2e-09
3c5r_A	137	Crystal Structure Of The Bard1 Ankyrin Repeat Domai		5e-09
3c5r_A	137	Crystal Structure Of The Bard1 Ankyrin Repeat Domai		5e-07
3hra_A	201	Crystal Structure Of Ef0377 An Ankyrin Repeat Prote		1e-08
4hbd_A	276	Crystal Structure Of Kank2 Ankyrin Repeats Length =		1e-08
4hbd_A	276	Crystal Structure Of Kank2 Ankyrin Repeats Length =		2e-06
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		1e-08
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		2e-07
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		3e-06
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		1e-08
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		2e-07
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		2e-05
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		4e-08
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		2e-06
1oy3_D	282	Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer		8e-08
1k3z_D	282	X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodi		8e-08
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		9e-08
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		6e-06
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		1e-07
4g8k_A	337	Intact Sensor Domain Of Human Rnase L In The Inacti		2e-07
1wdy_A	285	Crystal Structure Of Ribonuclease Length = 285		3e-07
1ikn_D	236	IkappabalphaNF-Kappab Complex Length = 236		6e-07
1nfi_E	213	I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213		7e-07
1s70_B	299	Complex Between Protein Ser/thr Phosphatase-1 (delt		9e-07
2zgd_A	110	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		1e-06
2zgg_A	92	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		2e-06
3v2o_A	183	Crystal Structure Of The Peptide Bound Complex Of T		2e-06
3v2x_A	167	Crystal Structure Of The Peptide Bound Complex Of T		3e-06
3so8_A	162	Crystal Structure Of Ankra Length = 162		3e-06
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		8e-06
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		9e-06
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		1e-05
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		1e-05
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		1e-05
3ehq_A	222	Crystal Structure Of Human Osteoclast Stimulating F		1e-05
3ehq_A	222	Crystal Structure Of Human Osteoclast Stimulating F		3e-04
2jab_A	136	A Designed Ankyrin Repeat Protein Evolved To Picomo		2e-05
2jab_A	136	A Designed Ankyrin Repeat Protein Evolved To Picomo		2e-04
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		2e-05
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		2e-05
2kbx_A	171	Solution Structure Of Ilk-Pinch Complex Length = 17		2e-05
2kbx_A	171	Solution Structure Of Ilk-Pinch Complex Length = 17		2e-04
3d9h_A	285	Crystal Structure Of The Splice Variant Of Human As		2e-05
3d9h_A	285	Crystal Structure Of The Splice Variant Of Human As		4e-05
3twq_A	175	Crystal Structure Of Arc4 From Human Tankyrase 2 (A		2e-05
3f6q_A	179	Crystal Structure Of Integrin-Linked Kinase Ankyrin		2e-05
3f6q_A	179	Crystal Structure Of Integrin-Linked Kinase Ankyrin		2e-04
3zkj_A	261	Crystal Structure Of Ankyrin Repeat And Socs Box-co		2e-05
1awc_B	153	Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 1		2e-05
3twr_A	165	Crystal Structure Of Arc4 From Human Tankyrase 2 In		3e-05
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		3e-05
3utm_A	351	Crystal Structure Of A Mouse Tankyrase-Axin Complex		3e-05
3twu_A	167	Crystal Structure Of Arc4 From Human Tankyrase 2 In		3e-05
3hg0_D	136	Crystal Structure Of A Darpin In Complex With Orf49		4e-05
3v30_A	172	Crystal Structure Of The Peptide Bound Complex Of T		7e-05
1ot8_A	239	Structure Of The Ankyrin Domain Of The Drosophila N		7e-05
3ui2_A	244	Crystal Structure Of The Cpsrp54 Tail Bound To Cpsr		2e-04
2qc9_A	210	Mouse Notch 1 Ankyrin Repeat Intracellular Domain L		3e-04
2rfa_A	232	Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat		3e-04
3deo_A	183	Structural Basis For Specific Substrate Recognition		3e-04
1bi8_B	166	Mechanism Of G1 Cyclin Dependent Kinase Inhibition		3e-04
1bd8_A	156	Structure Of Cdk Inhibitor P19ink4d Length = 156		4e-04
3uxg_A	172	Crystal Structure Of Rfxank Length = 172		5e-04
2f8x_K	256	Crystal Structure Of Activated Notch, Csl And Maml		5e-04
1yyh_A	253	Crystal Structure Of The Human Notch 1 Ankyrin Doma		6e-04
3lvr_E	497	The Crystal Structure Of Asap3 In Complex With Arf6		7e-04
2xen_A	91	Structural Determinants For Improved Thermal Stabil		7e-04
2f8y_A	223	Crystal Structure Of Human Notch1 Ankyrin Repeats T		7e-04

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 73.9 bits (180), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 79/240 (32%), Positives = 111/240 (46%), Gaps = 22/240 (9%)
Query: 14  VAEI---RSSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHI 70
           VAE+   R +  N   + G T L  A    ++++V  LL           N  G+ PLHI
Sbjct: 161 VAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWN--GYTPLHI 218
Query: 71  AAVQGHHAIVQVLLDHDPSLSQTTGPSNA------TPLVSAATRGHTAVVNELLSKDGGL 124
           AA Q    + + LL       Q  G +NA      TPL  AA  GH  +V  LLSK    
Sbjct: 219 AAKQNQVEVARSLL-------QYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANG 271
Query: 125 LEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKL 184
             +   +G   LH  A++GHV V   L+ K   +   T + G T LH+A    + ++VK 
Sbjct: 272 -NLGNKSGLTPLHLVAQEGHVPVADVLI-KHGVMVDATTRMGYTPLHVASHYGNIKLVKF 329
Query: 185 LLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGL 244
           LL+  A  V    K G + LH A ++  T+IVT LL     + N ++ D  T L IA+ L
Sbjct: 330 LLQHQAD-VNAKTKLGYSPLHQAAQQGHTDIVTLLLK-NGASPNEVSSDGTTPLAIAKRL 387

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 62.4 bits (150), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 58/174 (33%), Positives = 79/174 (45%), Gaps = 20/174 (11%)
Query: 100 TPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLA 159
           TPL  A+  GH  +V  LL + G    +S    +  LH AAR GH +V K LL    ++ 
Sbjct: 16  TPLHVASFMGHLPIVKNLLQR-GASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVN 74
Query: 160 RRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTEL 219
            +  K  QT LH A +     +VKLLLE +A    L    G+T LH+A R+   E V  L
Sbjct: 75  AKA-KDDQTPLHCAARIGHTNMVKLLLENNAN-PNLATTAGHTPLHIAAREGHVETVLAL 132
Query: 220 LSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVRANELNQPRD 273
           L   + +   +T+   T L +A                A+ G VR  EL   RD
Sbjct: 133 LE-KEASQACMTKKGFTPLHVA----------------AKYGKVRVAELLLERD 169

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 83.2 bits (204), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 64/165 (38%), Positives = 90/165 (54%), Gaps = 14/165 (8%)
Query: 25  VNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLL 84
           ++ELG+  L  AA+ G+ + V +LL+       +  +  G  PLH AA  GH  IV++LL
Sbjct: 1   MSELGKR-LIEAAENGNKDRVKDLLENGADPNAS--DSDGRTPLHYAAENGHKEIVKLLL 57
Query: 85  DH--DPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQ 142
               DP+   + G    TPL  AA  GH  +V  LLSK G       S+G+  LH+AA  
Sbjct: 58  SKGADPNAKDSDG---RTPLHYAAENGHKEIVKLLLSK-GADPNAKDSDGRTPLHYAAEN 113
Query: 143 GHVDVVKALLSK--DPQLARRTDKKGQTALHMAVKGQSCEVVKLL 185
           GH ++VK LLSK  DP     +D  G+T L +A +  + E+VKLL
Sbjct: 114 GHKEIVKLLLSKGADPNT---SDSDGRTPLDLAREHGNEEIVKLL 155

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 72.8 bits (177), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 56/142 (39%), Positives = 73/142 (51%), Gaps = 8/142 (5%)
Query: 102 LVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSK--DPQLA 159
           L+ AA  G+   V +LL ++G     S S+G+  LH+AA  GH ++VK LLSK  DP   
Sbjct: 8   LIEAAENGNKDRVKDLL-ENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNA- 65
Query: 160 RRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTEL 219
              D  G+T LH A +    E+VKLLL +  A     D  G T LH A      EIV  L
Sbjct: 66  --KDSDGRTPLHYAAENGHKEIVKLLL-SKGADPNAKDSDGRTPLHYAAENGHKEIVKLL 122
Query: 220 LSLPDTNVNALTRDHKTALDIA 241
           LS    + N    D +T LD+A
Sbjct: 123 LS-KGADPNTSDSDGRTPLDLA 143

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 81.6 bits (200), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 56/122 (45%), Positives = 69/122 (56%), Gaps = 3/122 (2%)
Query: 100 TPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLA 159
           TPL  AA  GH  VV +LL + G  +     NG+  LH AAR GH++VVK LL     + 
Sbjct: 4   TPLHLAARNGHLEVV-KLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 160 RRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTEL 219
            + DK G+T LH+A +    EVVKLLLEA  A V   DK G T LH+A R    E+V  L
Sbjct: 63  AK-DKNGRTPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLAARNGHLEVVKLL 120
Query: 220 LS 221
           L 
Sbjct: 121 LE 122

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/76 (44%), Positives = 44/76 (57%), Gaps = 2/76 (2%)
Query: 166 GQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDT 225
           G+T LH+A +    EVVKLLLEA  A V   DK G T LH+A R    E+V  LL     
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLAARNGHLEVVKLLLE-AGA 59
Query: 226 NVNALTRDHKTALDIA 241
           +VNA  ++ +T L +A
Sbjct: 60  DVNAKDKNGRTPLHLA 75

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 80.9 bits (198), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 65/165 (39%), Positives = 90/165 (54%), Gaps = 14/165 (8%)
Query: 25  VNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLL 84
           ++ELG+  L  AA+ G+ + V +LL+      +   +  G  PLH+AA  GH  +V++LL
Sbjct: 1   MSELGKR-LIEAAENGNKDRVKDLLENGAD--VNASDSDGKTPLHLAAENGHKEVVKLLL 57
Query: 85  DH--DPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQ 142
               DP+   + G    TPL  AA  GH  VV  LLS+ G       S+GK  LH AA  
Sbjct: 58  SQGADPNAKDSDG---KTPLHLAAENGHKEVVKLLLSQ-GADPNAKDSDGKTPLHLAAEN 113
Query: 143 GHVDVVKALLSK--DPQLARRTDKKGQTALHMAVKGQSCEVVKLL 185
           GH +VVK LLS+  DP     +D  G+T L +A +  + EVVKLL
Sbjct: 114 GHKEVVKLLLSQGADPNT---SDSDGRTPLDLAREHGNEEVVKLL 155

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 73.6 bits (179), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 58/142 (40%), Positives = 78/142 (54%), Gaps = 8/142 (5%)
Query: 102 LVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSK--DPQLA 159
           L+ AA  G+   V +LL ++G  +  S S+GK  LH AA  GH +VVK LLS+  DP  A
Sbjct: 8   LIEAAENGNKDRVKDLL-ENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPN-A 65
Query: 160 RRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTEL 219
           + +D  G+T LH+A +    EVVKLLL +  A     D  G T LH+A      E+V  L
Sbjct: 66  KDSD--GKTPLHLAAENGHKEVVKLLL-SQGADPNAKDSDGKTPLHLAAENGHKEVVKLL 122
Query: 220 LSLPDTNVNALTRDHKTALDIA 241
           LS    + N    D +T LD+A
Sbjct: 123 LSQ-GADPNTSDSDGRTPLDLA 143

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 77.8 bits (190), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 55/161 (34%), Positives = 90/161 (55%), Gaps = 6/161 (3%)
Query: 25  VNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLL 84
           ++ELG+  L  AA+ G+ + V +L++      +   +  G  PLH AA +GH  IV++L+
Sbjct: 1   MSELGKR-LIEAAENGNKDRVKDLIENGAD--VNASDSDGRTPLHYAAKEGHKEIVKLLI 57
Query: 85  DHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGH 144
                ++        TPL  AA  GH  +V  L+SK G  +    S+G+  LH+AA++GH
Sbjct: 58  SKGADVNAKD-SDGRTPLHYAAKEGHKEIVKLLISK-GADVNAKDSDGRTPLHYAAKEGH 115
Query: 145 VDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLL 185
            ++VK L+SK   +   +D  G+T L +A +  + E+VKLL
Sbjct: 116 KEIVKLLISKGADV-NTSDSDGRTPLDLAREHGNEEIVKLL 155

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 77.0 bits (188), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 53/140 (37%), Positives = 80/140 (57%), Gaps = 4/140 (2%)
Query: 102 LVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARR 161
           L+ AA  G+   V +L+ ++G  +  S S+G+  LH+AA++GH ++VK L+SK   +  +
Sbjct: 8   LIEAAENGNKDRVKDLI-ENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAK 66
Query: 162 TDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLS 221
            D  G+T LH A K    E+VKLL+ +  A V   D  G T LH A ++   EIV  L+S
Sbjct: 67  -DSDGRTPLHYAAKEGHKEIVKLLI-SKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLIS 124
Query: 222 LPDTNVNALTRDHKTALDIA 241
               +VN    D +T LD+A
Sbjct: 125 -KGADVNTSDSDGRTPLDLA 143

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 72.0 bits (175), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 57/161 (35%), Positives = 86/161 (53%), Gaps = 6/161 (3%)
Query: 25  VNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLL 84
           ++ELG+  L  AA+ G+ + V +L++      +   +  G  PLH AA  GH  +V++L+
Sbjct: 1   MSELGKR-LIEAAENGNKDRVKDLIENGAD--VNASDSDGRTPLHHAAENGHKEVVKLLI 57
Query: 85  DHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGH 144
                ++        TPL  AA  GH  VV  L+SK G  +    S+G+  LH AA  GH
Sbjct: 58  SKGADVNAKD-SDGRTPLHHAAENGHKEVVKLLISK-GADVNAKDSDGRTPLHHAAENGH 115
Query: 145 VDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLL 185
            +VVK L+SK   +   +D  G+T L +A +  + EVVKLL
Sbjct: 116 KEVVKLLISKGADV-NTSDSDGRTPLDLAREHGNEEVVKLL 155

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 69.7 bits (169), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 53/140 (37%), Positives = 75/140 (53%), Gaps = 4/140 (2%)
Query: 102 LVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARR 161
           L+ AA  G+   V +L+ ++G  +  S S+G+  LH AA  GH +VVK L+SK   +  +
Sbjct: 8   LIEAAENGNKDRVKDLI-ENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAK 66
Query: 162 TDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLS 221
            D  G+T LH A +    EVVKLL+ +  A V   D  G T LH A      E+V  L+S
Sbjct: 67  -DSDGRTPLHHAAENGHKEVVKLLI-SKGADVNAKDSDGRTPLHHAAENGHKEVVKLLIS 124
Query: 222 LPDTNVNALTRDHKTALDIA 241
               +VN    D +T LD+A
Sbjct: 125 -KGADVNTSDSDGRTPLDLA 143

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score = 72.0 bits (175), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 63/190 (33%), Positives = 92/190 (48%), Gaps = 11/190 (5%)
Query: 22  VNEVNELGETALFTAADKGHIEVVNELLKYSTKEG--LTRKNRSGFDPLHIAAVQGHHAI 79
           ++  +E   T L  AA+  H+E V    KY  K G  +  K+  G   LH+AA +GH+ +
Sbjct: 37  IDTCSEDQRTPLMEAAENNHLEAV----KYLIKAGALVDPKDAEGSTCLHLAAKKGHYEV 92
Query: 80  VQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKN-ALHF 138
           VQ LL +             TP++ A    H  +V  LLSK G  + I R N +N  LH+
Sbjct: 93  VQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSK-GSDINI-RDNEENICLHW 150
Query: 139 AARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDK 198
           AA  G VD+ + LL+    L    +  G + LH+A +    + V L L  D+  V L +K
Sbjct: 151 AAFSGCVDIAEILLAAKCDL-HAVNIHGDSPLHIAARENRYDCVVLFLSRDSD-VTLKNK 208
Query: 199 FGNTALHVAT 208
            G T L  A+
Sbjct: 209 EGETPLQCAS 218

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score = 68.2 bits (165), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 60/207 (28%), Positives = 90/207 (43%), Gaps = 35/207 (16%)
Query: 67  PLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLE 126
           PLH AA  GH  I  +L+    ++  T      TPL+ AA   H   V  L+ K G L++
Sbjct: 14  PLHAAAEAGHVDICHMLVQAGANID-TCSEDQRTPLMEAAENNHLEAVKYLI-KAGALVD 71
Query: 127 ISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLL 186
              + G   LH AA++GH +VV+ LLS         D  G T +  A + +  ++VKLLL
Sbjct: 72  PKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLL 131
Query: 187 E------------------------ADAAIVMLPDK--------FGNTALHVATRKKRTE 214
                                     D A ++L  K         G++ LH+A R+ R +
Sbjct: 132 SKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYD 191
Query: 215 IVTELLSLPDTNVNALTRDHKTALDIA 241
            V   LS  D++V    ++ +T L  A
Sbjct: 192 CVVLFLS-RDSDVTLKNKEGETPLQCA 217

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 44/90 (48%), Positives = 54/90 (60%), Gaps = 2/90 (2%)
Query: 131 NGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADA 190
           NG+  LH AAR GH++VVK LL     +  + DK G+T LH+A +    EVVKLLLEA  
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEA-G 58
Query: 191 AIVMLPDKFGNTALHVATRKKRTEIVTELL 220
           A V   DK G T LH+A R    E+V  LL
Sbjct: 59  ADVNAKDKNGRTPLHLAARNGHLEVVKLLL 88

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 69.3 bits (168), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 48/130 (36%), Positives = 68/130 (52%), Gaps = 4/130 (3%)
Query: 22  VNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQ 81
           VN  ++ G T L  AA +GH+E+V  LLK      +  K++ G+ PLH+AA +GH  IV+
Sbjct: 28  VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD--VNAKDKDGYTPLHLAAREGHLEIVE 85
Query: 82  VLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAAR 141
           VLL     ++        TPL  AA  GH  +V E+L K G  +      GK     A R
Sbjct: 86  VLLKAGADVN-AKDKDGYTPLHLAAREGHLEIV-EVLLKAGADVNAQDKFGKTPFDLAIR 143
Query: 142 QGHVDVVKAL 151
           +GH D+ + L
Sbjct: 144 EGHEDIAEVL 153

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 68.6 bits (166), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 45/116 (38%), Positives = 65/116 (56%), Gaps = 3/116 (2%)
Query: 100 TPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLA 159
           TPL  AA  GH  +V E+L K G  +     +G   LH AAR+GH+++V+ LL     + 
Sbjct: 37  TPLHLAAREGHLEIV-EVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 95
Query: 160 RRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEI 215
            + DK G T LH+A +    E+V++LL+A  A V   DKFG T   +A R+   +I
Sbjct: 96  AK-DKDGYTPLHLAAREGHLEIVEVLLKA-GADVNAQDKFGKTPFDLAIREGHEDI 149

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 55.5 bits (132), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 47/124 (37%), Positives = 67/124 (54%), Gaps = 7/124 (5%)
Query: 139 AARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDK 198
           AAR G  D V+ L++    +  + DK G T LH+A +    E+V++LL+A  A V   DK
Sbjct: 9   AARAGQDDEVRILMANGADVNAK-DKDGYTPLHLAAREGHLEIVEVLLKA-GADVNAKDK 66
Query: 199 FGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLA 258
            G T LH+A R+   EIV E+L     +VNA  +D  T L +A    + E   EI + L 
Sbjct: 67  DGYTPLHLAAREGHLEIV-EVLLKAGADVNAKDKDGYTPLHLA----AREGHLEIVEVLL 121
Query: 259 RCGA 262
           + GA
Sbjct: 122 KAGA 125

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 68.6 bits (166), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 44/129 (34%), Positives = 71/129 (55%), Gaps = 3/129 (2%)
Query: 60  KNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLS 119
           K++ G+ PLH+AA +GH  IV+VLL     ++        TPL  AA  GH  +V E+L 
Sbjct: 31  KDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD-KDGYTPLHLAAREGHLEIV-EVLL 88
Query: 120 KDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSC 179
           K G  +     +G   LH AAR+GH+++V+ LL     +    DK G+T   +A+   + 
Sbjct: 89  KAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV-NAQDKFGKTPFDLAIDNGNE 147
Query: 180 EVVKLLLEA 188
           ++ ++L +A
Sbjct: 148 DIAEVLQKA 156

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 65.5 bits (158), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 44/116 (37%), Positives = 63/116 (54%), Gaps = 3/116 (2%)
Query: 100 TPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLA 159
           TPL  AA  GH  +V E+L K G  +     +G   LH AAR+GH+++V+ LL     + 
Sbjct: 37  TPLHLAAREGHLEIV-EVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 95
Query: 160 RRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEI 215
            + DK G T LH+A +    E+V++LL+A  A V   DKFG T   +A      +I
Sbjct: 96  AK-DKDGYTPLHLAAREGHLEIVEVLLKA-GADVNAQDKFGKTPFDLAIDNGNEDI 149

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 55.5 bits (132), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 47/124 (37%), Positives = 67/124 (54%), Gaps = 7/124 (5%)
Query: 139 AARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDK 198
           AAR G  D V+ L++    +  + DK G T LH+A +    E+V++LL+A  A V   DK
Sbjct: 9   AARAGQDDEVRILMANGADVNAK-DKDGYTPLHLAAREGHLEIVEVLLKA-GADVNAKDK 66
Query: 199 FGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLA 258
            G T LH+A R+   EIV E+L     +VNA  +D  T L +A    + E   EI + L 
Sbjct: 67  DGYTPLHLAAREGHLEIV-EVLLKAGADVNAKDKDGYTPLHLA----AREGHLEIVEVLL 121
Query: 259 RCGA 262
           + GA
Sbjct: 122 KAGA 125

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 43/126 (34%), Positives = 70/126 (55%), Gaps = 3/126 (2%)
Query: 60  KNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLS 119
           K++ G+ PLH+AA +GH  IV+VLL     ++        TPL  AA  GH  +V E+L 
Sbjct: 43  KDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD-KDGYTPLHLAAREGHLEIV-EVLL 100
Query: 120 KDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSC 179
           K G  +     +G   LH AAR+GH+++V+ LL     +    DK G+TA  +++   + 
Sbjct: 101 KAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV-NAQDKFGKTAFDISIDNGNE 159
Query: 180 EVVKLL 185
           ++ ++L
Sbjct: 160 DLAEIL 165

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 53/147 (36%), Positives = 77/147 (52%), Gaps = 12/147 (8%)
Query: 139 AARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDK 198
           AAR G  D V+ L++    +  + DK G T LH+A +    E+V++LL+A  A V   DK
Sbjct: 21  AARAGQDDEVRILMANGADVNAK-DKDGYTPLHLAAREGHLEIVEVLLKA-GADVNAKDK 78
Query: 199 FGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLA 258
            G T LH+A R+   EIV E+L     +VNA  +D  T L +A    + E   EI + L 
Sbjct: 79  DGYTPLHLAAREGHLEIV-EVLLKAGADVNAKDKDGYTPLHLA----AREGHLEIVEVLL 133
Query: 259 RCGAVRANELNQPRDELRKTVTQIKKD 285
           + GA    ++N  +D+  KT   I  D
Sbjct: 134 KAGA----DVN-AQDKFGKTAFDISID 155

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/128 (36%), Positives = 77/128 (60%), Gaps = 7/128 (5%)
Query: 60  KNRSGFDPLHIAAVQGHHAIVQVLLDH--DPSLSQTTGPSNATPLVSAATRGHTAVVNEL 117
           ++ +G+ PLH+AA  GH  IV+VLL +  D +   + G    TPL  AA RGH  +V E+
Sbjct: 43  RDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLG---VTPLHLAARRGHLEIV-EV 98
Query: 118 LSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQ 177
           L K+G  +  S S+G   LH AA++GH+++V+ LL K+       DK G+TA  +++   
Sbjct: 99  LLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLL-KNGADVNAQDKFGKTAFDISIDNG 157
Query: 178 SCEVVKLL 185
           + ++ ++L
Sbjct: 158 NEDLAEIL 165

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 46/123 (37%), Positives = 67/123 (54%), Gaps = 3/123 (2%)
Query: 100 TPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLA 159
           TPL  AA  GH  +V E+L K+G  +    S G   LH AAR+GH+++V+ LL K+    
Sbjct: 49  TPLHLAAHFGHLEIV-EVLLKNGADVNAKDSLGVTPLHLAARRGHLEIVEVLL-KNGADV 106
Query: 160 RRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTEL 219
             +D  G T LH+A K    E+V++LL+ + A V   DKFG TA  ++      ++   L
Sbjct: 107 NASDSHGFTPLHLAAKRGHLEIVEVLLK-NGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Query: 220 LSL 222
             L
Sbjct: 166 QKL 168

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/147 (33%), Positives = 71/147 (48%), Gaps = 12/147 (8%)
Query: 139 AARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDK 198
           AAR G  D V+ L++    +  R D  G T LH+A      E+V++LL+ + A V   D 
Sbjct: 21  AARAGQDDEVRILMANGADVNAR-DFTGWTPLHLAAHFGHLEIVEVLLK-NGADVNAKDS 78
Query: 199 FGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLA 258
            G T LH+A R+   EIV E+L     +VNA      T L +A    +     EI + L 
Sbjct: 79  LGVTPLHLAARRGHLEIV-EVLLKNGADVNASDSHGFTPLHLA----AKRGHLEIVEVLL 133
Query: 259 RCGAVRANELNQPRDELRKTVTQIKKD 285
           + GA    ++N  +D+  KT   I  D
Sbjct: 134 KNGA----DVN-AQDKFGKTAFDISID 155

>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 269

Iteration: 1
 Score = 66.2 bits (160), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 60/187 (32%), Positives = 81/187 (43%), Gaps = 38/187 (20%)
Query: 56  GLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVN 115
           G+   ++ G  PLH+AA+ G   ++ +LL H        G  NA   V            
Sbjct: 78  GVNVTSQDGSSPLHVAALHGRADLIPLLLKH----GANAGARNADQAVP----------- 122
Query: 116 ELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVK 175
                               LH A +QGH  VVK LL  + +   + D  G T L  A  
Sbjct: 123 --------------------LHLACQQGHFQVVKCLLDSNAK-PNKKDLSGNTPLIYACS 161
Query: 176 GQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHK 235
           G   E+V LLL+  A+I    +K GNTALH A  +K    V ELL L   +V  L +  +
Sbjct: 162 GGHHELVALLLQHGASINASNNK-GNTALHEAVIEKHV-FVVELLLLHGASVQVLNKRQR 219
Query: 236 TALDIAE 242
           TA+D AE
Sbjct: 220 TAVDCAE 226

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 65.9 bits (159), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 43/126 (34%), Positives = 72/126 (57%), Gaps = 3/126 (2%)
Query: 60  KNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLS 119
           ++ SG  PLH+AA++GH  IV+VLL H   ++      + TPL  AA  GH  +V E+L 
Sbjct: 43  EDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMGD-TPLHLAALYGHLEIV-EVLL 100
Query: 120 KDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSC 179
           K+G  +  + + G   LH AA  GH+++V+ LL     +    DK G+TA  +++   + 
Sbjct: 101 KNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGADV-NAQDKFGKTAFDISIDNGNE 159
Query: 180 EVVKLL 185
           ++ ++L
Sbjct: 160 DLAEIL 165

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 62.0 bits (149), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 51/147 (34%), Positives = 73/147 (49%), Gaps = 4/147 (2%)
Query: 95  GPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSK 154
           G      L+ AA  G    V  +L  +G  +     +GK  LH AA +GH+++V+ LL  
Sbjct: 11  GSDLGKKLLEAARAGQDDEV-RILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKH 69
Query: 155 DPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTE 214
              +    DK G T LH+A      E+V++LL+ + A V   D +G T LH+A      E
Sbjct: 70  GADV-NAADKMGDTPLHLAALYGHLEIVEVLLK-NGADVNATDTYGFTPLHLAADAGHLE 127
Query: 215 IVTELLSLPDTNVNALTRDHKTALDIA 241
           IV  LL     +VNA  +  KTA DI+
Sbjct: 128 IVEVLLKYG-ADVNAQDKFGKTAFDIS 153

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 65.5 bits (158), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 45/127 (35%), Positives = 72/127 (56%), Gaps = 7/127 (5%)
Query: 61  NRSGFDPLHIAAVQGHHAIVQVLLDH--DPSLSQTTGPSNATPLVSAATRGHTAVVNELL 118
           +  G+ PLH+AA  GH  IV+VLL +  D + S  TG    TPL  AA  GH  +V E+L
Sbjct: 44  DNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTG---ITPLHLAAATGHLEIV-EVL 99
Query: 119 SKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQS 178
            K G  +    ++G   LH AA+ GH+++V+ LL     +  + DK G+TA  +++   +
Sbjct: 100 LKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVNAQ-DKFGKTAFDISIDNGN 158
Query: 179 CEVVKLL 185
            ++ ++L
Sbjct: 159 EDLAEIL 165

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/116 (36%), Positives = 61/116 (52%), Gaps = 3/116 (2%)
Query: 100 TPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLA 159
           TPL  AA+ GH  +V E+L K+G  +  S   G   LH AA  GH+++V+ LL     + 
Sbjct: 49  TPLHLAASNGHLEIV-EVLLKNGADVNASDLTGITPLHLAAATGHLEIVEVLLKHGADV- 106
Query: 160 RRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEI 215
              D  G T LH+A K    E+V++LL+   A V   DKFG TA  ++      ++
Sbjct: 107 NAYDNDGHTPLHLAAKYGHLEIVEVLLKH-GADVNAQDKFGKTAFDISIDNGNEDL 161

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 49/147 (33%), Positives = 70/147 (47%), Gaps = 12/147 (8%)
Query: 139 AARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDK 198
           AAR G  D V+ L++    +   TD  G T LH+A      E+V++LL+ + A V   D 
Sbjct: 21  AARAGQDDEVRILMANGADV-NATDNDGYTPLHLAASNGHLEIVEVLLK-NGADVNASDL 78
Query: 199 FGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLA 258
            G T LH+A      EIV E+L     +VNA   D  T L +A    +     EI + L 
Sbjct: 79  TGITPLHLAAATGHLEIV-EVLLKHGADVNAYDNDGHTPLHLA----AKYGHLEIVEVLL 133
Query: 259 RCGAVRANELNQPRDELRKTVTQIKKD 285
           + GA    ++N  +D+  KT   I  D
Sbjct: 134 KHGA----DVN-AQDKFGKTAFDISID 155

>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting Protein 14 Length = 240

Iteration: 1
 Score = 65.5 bits (158), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 57/177 (32%), Positives = 90/177 (50%), Gaps = 6/177 (3%)
Query: 68  LHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEI 127
           LH AA+     +V+  +     + Q  G  N+TPL  A  +GH ++V +L+ K G    +
Sbjct: 46  LHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLM-KYGADPSL 104
Query: 128 SRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAV-KGQSCEVVKLLL 186
               G + +H AA+ GH  +V  L++K  Q     D+ G T L  A  +  S +  +LLL
Sbjct: 105 IDGEGCSCIHLAAQFGHTSIVAYLIAK-GQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLL 163
Query: 187 EADAAIVMLPDKF-GNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAE 242
             + + V L DK+  NTALH A     T +++ LL     NV+A     ++ALD+A+
Sbjct: 164 TFNVS-VNLGDKYHKNTALHWAVLAGNTTVISLLLE-AGANVDAQNIKGESALDLAK 218

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 65.5 bits (158), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 45/124 (36%), Positives = 70/124 (56%), Gaps = 7/124 (5%)
Query: 64  GFDPLHIAAVQGHHAIVQVLLDH--DPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKD 121
           G+ PLH+AA  GH  IV+VLL +  D +   T G   +TPL  AA  GH  +V E+L K+
Sbjct: 47  GWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLG---STPLHLAAHFGHLEIV-EVLLKN 102
Query: 122 GGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEV 181
           G  +     NG   LH AA +GH+++V+ LL     +    DK G+TA  +++   + ++
Sbjct: 103 GADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGADV-NAQDKFGKTAFDISINNGNEDL 161
Query: 182 VKLL 185
            ++L
Sbjct: 162 AEIL 165

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 55.5 bits (132), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 42/110 (38%), Positives = 58/110 (52%), Gaps = 3/110 (2%)
Query: 132 GKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAA 191
           G   LH AA  GH+++V+ LL K+       D  G T LH+A      E+V++LL+ + A
Sbjct: 47  GWTPLHLAAYWGHLEIVEVLL-KNGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLK-NGA 104
Query: 192 IVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 241
            V   D  G T LH+A  +   EIV  LL     +VNA  +  KTA DI+
Sbjct: 105 DVNAKDDNGITPLHLAANRGHLEIVEVLLKYG-ADVNAQDKFGKTAFDIS 153

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 65.1 bits (157), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 45/127 (35%), Positives = 71/127 (55%), Gaps = 7/127 (5%)
Query: 61  NRSGFDPLHIAAVQGHHAIVQVLLDH--DPSLSQTTGPSNATPLVSAATRGHTAVVNELL 118
           + +G  PLH+AA  GH  IV+VLL H  D   S   G    TPL  AA  GH  +V E+L
Sbjct: 44  DNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFG---YTPLHLAAYWGHLEIV-EVL 99
Query: 119 SKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQS 178
            K+G  +    S+G   LH AA+ G++++V+ LL     +  + DK G+TA  +++   +
Sbjct: 100 LKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVNAQ-DKFGKTAFDISIDNGN 158
Query: 179 CEVVKLL 185
            ++ ++L
Sbjct: 159 EDLAEIL 165

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 61.6 bits (148), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 45/126 (35%), Positives = 64/126 (50%), Gaps = 3/126 (2%)
Query: 97  SNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDP 156
           +  TPL  AA  GH  +V E+L K G  ++ S   G   LH AA  GH+++V+ LL K+ 
Sbjct: 46  TGTTPLHLAAYSGHLEIV-EVLLKHGADVDASDVFGYTPLHLAAYWGHLEIVEVLL-KNG 103
Query: 157 QLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIV 216
                 D  G T LH+A K    E+V++LL+   A V   DKFG TA  ++      ++ 
Sbjct: 104 ADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKH-GADVNAQDKFGKTAFDISIDNGNEDLA 162
Query: 217 TELLSL 222
             L  L
Sbjct: 163 EILQKL 168

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 65.1 bits (157), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 46/124 (37%), Positives = 70/124 (56%), Gaps = 7/124 (5%)
Query: 64  GFDPLHIAAVQGHHAIVQVLLDH--DPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKD 121
           G+ PLH+AA  GH  IV+VLL +  D +   + G    TPL  AA RGH  VV E+L K+
Sbjct: 47  GWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLG---VTPLHLAADRGHLEVV-EVLLKN 102
Query: 122 GGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEV 181
           G  +  +  NG   LH AA  GH+++V+ LL     +    DK G+TA  +++   + ++
Sbjct: 103 GADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGADV-NAQDKFGKTAFDISIDNGNEDL 161
Query: 182 VKLL 185
            ++L
Sbjct: 162 AEIL 165

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 52/147 (35%), Positives = 70/147 (47%), Gaps = 4/147 (2%)
Query: 95  GPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSK 154
           G      L+ AA  G    V  +L  +G  +  S   G   LH AA  GH+++V+ LL K
Sbjct: 11  GSDLGKKLLEAARAGQDDEV-RILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLL-K 68
Query: 155 DPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTE 214
           +       D  G T LH+A      EVV++LL+ + A V   D  G T LH+A      E
Sbjct: 69  NGADVNADDSLGVTPLHLAADRGHLEVVEVLLK-NGADVNANDHNGFTPLHLAANIGHLE 127
Query: 215 IVTELLSLPDTNVNALTRDHKTALDIA 241
           IV  LL     +VNA  +  KTA DI+
Sbjct: 128 IVEVLLK-HGADVNAQDKFGKTAFDIS 153

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/131 (38%), Positives = 69/131 (52%), Gaps = 8/131 (6%)
Query: 22  VNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQ 81
           VN V+  G T L  AA  GH+E+V  LLK+     +   +  GF PLH+AA+ GH  IV+
Sbjct: 40  VNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGAD--VDAADVYGFTPLHLAAMTGHLEIVE 97
Query: 82  VLLDH--DPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFA 139
           VLL +  D +    TG   +TPL  AA  GH  +V E+L K G  +      GK A   +
Sbjct: 98  VLLKYGADVNAFDMTG---STPLHLAADEGHLEIV-EVLLKYGADVNAQDKFGKTAFDIS 153
Query: 140 ARQGHVDVVKA 150
              G+ D+ K+
Sbjct: 154 IDNGNEDLAKS 164

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/123 (34%), Positives = 65/123 (52%), Gaps = 3/123 (2%)
Query: 61  NRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSK 120
           + +G  PLH+AAV GH  IV+VLL H   +         TPL  AA  GH  +V E+L K
Sbjct: 44  DNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAAD-VYGFTPLHLAAMTGHLEIV-EVLLK 101
Query: 121 DGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCE 180
            G  +      G   LH AA +GH+++V+ LL     +  + DK G+TA  +++   + +
Sbjct: 102 YGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVNAQ-DKFGKTAFDISIDNGNED 160
Query: 181 VVK 183
           + K
Sbjct: 161 LAK 163

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 48/147 (32%), Positives = 68/147 (46%), Gaps = 12/147 (8%)
Query: 139 AARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDK 198
           AAR G  D V+ L++    +    D  G T LH+A      E+V++LL+   A V   D 
Sbjct: 21  AARAGQDDEVRILIANGADV-NAVDNTGLTPLHLAAVSGHLEIVEVLLKH-GADVDAADV 78
Query: 199 FGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLA 258
           +G T LH+A      EIV  LL     +VNA      T L +A    + E   EI + L 
Sbjct: 79  YGFTPLHLAAMTGHLEIVEVLLKYG-ADVNAFDMTGSTPLHLA----ADEGHLEIVEVLL 133
Query: 259 RCGAVRANELNQPRDELRKTVTQIKKD 285
           + GA    ++N  +D+  KT   I  D
Sbjct: 134 KYGA----DVN-AQDKFGKTAFDISID 155

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/130 (33%), Positives = 67/130 (51%), Gaps = 4/130 (3%)
Query: 22  VNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQ 81
           VN  +  G T L    + GH+E++  LLKY+    +   ++SG+ PLH+AA +GH  IV+
Sbjct: 40  VNANDWFGITPLHLVVNNGHLEIIEVLLKYAAD--VNASDKSGWTPLHLAAYRGHLEIVE 97
Query: 82  VLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAAR 141
           VLL +   ++        TPL  AA  GH  +V E+L K G  +      GK A   +  
Sbjct: 98  VLLKYGADVNAMD-YQGYTPLHLAAEDGHLEIV-EVLLKYGADVNAQDKFGKTAFDISID 155
Query: 142 QGHVDVVKAL 151
            G+ D+ + L
Sbjct: 156 NGNEDLAEIL 165

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 39/123 (31%), Positives = 61/123 (49%), Gaps = 3/123 (2%)
Query: 100 TPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLA 159
           TPL      GH  ++ E+L K    +  S  +G   LH AA +GH+++V+ LL     + 
Sbjct: 49  TPLHLVVNNGHLEII-EVLLKYAADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADV- 106
Query: 160 RRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTEL 219
              D +G T LH+A +    E+V++LL+   A V   DKFG TA  ++      ++   L
Sbjct: 107 NAMDYQGYTPLHLAAEDGHLEIVEVLLKY-GADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Query: 220 LSL 222
             L
Sbjct: 166 QKL 168

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 48.5 bits (114), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 48/147 (32%), Positives = 71/147 (48%), Gaps = 12/147 (8%)
Query: 139 AARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDK 198
           AAR G  D V+ L++    +    D  G T LH+ V     E++++LL+  AA V   DK
Sbjct: 21  AARAGQDDEVRILMANGADV-NANDWFGITPLHLVVNNGHLEIIEVLLKY-AADVNASDK 78
Query: 199 FGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLA 258
            G T LH+A  +   EIV  LL     +VNA+     T L +A    + +   EI + L 
Sbjct: 79  SGWTPLHLAAYRGHLEIVEVLLKYG-ADVNAMDYQGYTPLHLA----AEDGHLEIVEVLL 133
Query: 259 RCGAVRANELNQPRDELRKTVTQIKKD 285
           + GA    ++N  +D+  KT   I  D
Sbjct: 134 KYGA----DVN-AQDKFGKTAFDISID 155

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/126 (34%), Positives = 71/126 (56%), Gaps = 3/126 (2%)
Query: 60  KNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLS 119
           ++ SG+ PLH+AA  GH  IV+VLL +   ++     +  TPL  AA  GH  +V E+L 
Sbjct: 43  EDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVD-HAGMTPLRLAALFGHLEIV-EVLL 100
Query: 120 KDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSC 179
           K+G  +  +   G   LH AA  GH+++V+ LL K+       DK G+TA  +++   + 
Sbjct: 101 KNGADVNANDMEGHTPLHLAAMFGHLEIVEVLL-KNGADVNAQDKFGKTAFDISIDNGNE 159
Query: 180 EVVKLL 185
           ++ ++L
Sbjct: 160 DLAEIL 165

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/147 (33%), Positives = 71/147 (48%), Gaps = 4/147 (2%)
Query: 95  GPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSK 154
           G      L+ AA  G    V  +L  +G  +    ++G   LH AA  GH+++V+ LL K
Sbjct: 11  GSDLGKKLLEAARAGRDDEV-RILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLL-K 68
Query: 155 DPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTE 214
           +       D  G T L +A      E+V++LL+ + A V   D  G+T LH+A      E
Sbjct: 69  NGADVNAVDHAGMTPLRLAALFGHLEIVEVLLK-NGADVNANDMEGHTPLHLAAMFGHLE 127
Query: 215 IVTELLSLPDTNVNALTRDHKTALDIA 241
           IV  LL     +VNA  +  KTA DI+
Sbjct: 128 IVEVLLK-NGADVNAQDKFGKTAFDIS 153

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 49/146 (33%), Positives = 70/146 (47%), Gaps = 4/146 (2%)
Query: 6   SGAEFDTEVAEIRSSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGF 65
           +G + +  +     + VN  + LG T L  AA  GH+E+V  LLKY     +   +  G 
Sbjct: 24  AGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGAD--VNAWDNYGA 81
Query: 66  DPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLL 125
            PLH+AA  GH  IV+VLL H   ++        TPL  AA  GH  +V E+L K G  +
Sbjct: 82  TPLHLAADNGHLEIVEVLLKHGADVNAKD-YEGFTPLHLAAYDGHLEIV-EVLLKYGADV 139
Query: 126 EISRSNGKNALHFAARQGHVDVVKAL 151
                 GK A   +   G+ D+ + L
Sbjct: 140 NAQDKFGKTAFDISIDNGNEDLAEIL 165

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/122 (34%), Positives = 64/122 (52%), Gaps = 3/122 (2%)
Query: 64  GFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGG 123
           G  PLH+AA  GH  IV+VLL +   ++       ATPL  AA  GH  +V E+L K G 
Sbjct: 47  GHTPLHLAAKTGHLEIVEVLLKYGADVNAWDN-YGATPLHLAADNGHLEIV-EVLLKHGA 104
Query: 124 LLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVK 183
            +      G   LH AA  GH+++V+ LL     +    DK G+TA  +++   + ++ +
Sbjct: 105 DVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADV-NAQDKFGKTAFDISIDNGNEDLAE 163
Query: 184 LL 185
           +L
Sbjct: 164 IL 165

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/147 (33%), Positives = 72/147 (48%), Gaps = 12/147 (8%)
Query: 139 AARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDK 198
           AAR G  D V+ L++    +   TD  G T LH+A K    E+V++LL+   A V   D 
Sbjct: 21  AARAGQDDEVRILMANGADV-NATDWLGHTPLHLAAKTGHLEIVEVLLKY-GADVNAWDN 78
Query: 199 FGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLA 258
           +G T LH+A      EIV E+L     +VNA   +  T L +A    + +   EI + L 
Sbjct: 79  YGATPLHLAADNGHLEIV-EVLLKHGADVNAKDYEGFTPLHLA----AYDGHLEIVEVLL 133
Query: 259 RCGAVRANELNQPRDELRKTVTQIKKD 285
           + GA    ++N  +D+  KT   I  D
Sbjct: 134 KYGA----DVN-AQDKFGKTAFDISID 155

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 44/99 (44%), Positives = 55/99 (55%), Gaps = 3/99 (3%)
Query: 131 NGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADA 190
           +G   LH AA+ GH + VK LLSK   +  R+ K G T LH+A K    E+VKLLL A  
Sbjct: 8   DGNTPLHNAAKNGHAEEVKKLLSKGADVNARS-KDGNTPLHLAAKNGHAEIVKLLL-AKG 65
Query: 191 AIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNA 229
           A V    K GNT  H+A +    EIV +LL     +VNA
Sbjct: 66  ADVNARSKDGNTPEHLAKKNGHHEIV-KLLDAKGADVNA 103

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 62.4 bits (150), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 62/214 (28%), Positives = 104/214 (48%), Gaps = 17/214 (7%)
Query: 1   MVGNLSGAEFDTEVAEIRSSVVNE------VNELGETALFTAADKGHIEVVNELLKYSTK 54
           MV NL+   +  ++ E++ S++ +       ++   TAL  A   GH E+V  LL+    
Sbjct: 10  MVCNLA---YSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP 66
Query: 55  EGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVV 114
             +  K+ +G+ PLHIAA  G   IV+ LL     ++     +  TPL  AA++    + 
Sbjct: 67  --VNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVN-AVNQNGCTPLHYAASKNRHEIA 123
Query: 115 NELLSKDGGLLEISRSNGK-NALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMA 173
             LL  +GG    ++ + +  A+H AA +G++ ++  LL          D +G T LH+A
Sbjct: 124 VMLL--EGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKAS-TNIQDTEGNTPLHLA 180
Query: 174 VKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVA 207
              +  E  KLL+   A+I  + +K   T L VA
Sbjct: 181 CDEERVEEAKLLVSQGASI-YIENKEEKTPLQVA 213

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 55.5 bits (132), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 53/186 (28%), Positives = 86/186 (46%), Gaps = 5/186 (2%)
Query: 58  TRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNEL 117
           TR ++     LH A   GH  IV+ LL     ++     +  +PL  AA+ G   +V  L
Sbjct: 35  TRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKD-DAGWSPLHIAASAGRDEIVKAL 93
Query: 118 LSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQ 177
           L K G  +     NG   LH+AA +   ++   LL        + D    TA+H A    
Sbjct: 94  LGK-GAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAK-DHYEATAMHRAAAKG 151
Query: 178 SCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTA 237
           + +++ +LL   A+   + D  GNT LH+A  ++R E    L+S    ++    ++ KT 
Sbjct: 152 NLKMIHILLYYKAS-TNIQDTEGNTPLHLACDEERVEEAKLLVS-QGASIYIENKEEKTP 209
Query: 238 LDIAEG 243
           L +A+G
Sbjct: 210 LQVAKG 215

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/102 (35%), Positives = 50/102 (49%), Gaps = 2/102 (1%)
Query: 140 ARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKF 199
           A  G ++ +K  +  D  LA RTD+  +TALH A      E+V+ LL+     V   D  
Sbjct: 15  AYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP-VNDKDDA 73
Query: 200 GNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 241
           G + LH+A    R EIV  LL      VNA+ ++  T L  A
Sbjct: 74  GWSPLHIAASAGRDEIVKALLG-KGAQVNAVNQNGCTPLHYA 114

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 62.4 bits (150), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 62/214 (28%), Positives = 104/214 (48%), Gaps = 17/214 (7%)
Query: 1   MVGNLSGAEFDTEVAEIRSSVVNE------VNELGETALFTAADKGHIEVVNELLKYSTK 54
           MV NL+   +  ++ E++ S++ +       ++   TAL  A   GH E+V  LL+    
Sbjct: 9   MVCNLA---YSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP 65
Query: 55  EGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVV 114
             +  K+ +G+ PLHIAA  G   IV+ LL     ++     +  TPL  AA++    + 
Sbjct: 66  --VNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVN-AVNQNGCTPLHYAASKNRHEIA 122
Query: 115 NELLSKDGGLLEISRSNGK-NALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMA 173
             LL  +GG    ++ + +  A+H AA +G++ ++  LL          D +G T LH+A
Sbjct: 123 VMLL--EGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKAS-TNIQDTEGNTPLHLA 179
Query: 174 VKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVA 207
              +  E  KLL+   A+I  + +K   T L VA
Sbjct: 180 CDEERVEEAKLLVSQGASIY-IENKEEKTPLQVA 212

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 55.1 bits (131), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 53/186 (28%), Positives = 86/186 (46%), Gaps = 5/186 (2%)
Query: 58  TRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNEL 117
           TR ++     LH A   GH  IV+ LL     ++     +  +PL  AA+ G   +V  L
Sbjct: 34  TRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKD-DAGWSPLHIAASAGRDEIVKAL 92
Query: 118 LSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQ 177
           L K G  +     NG   LH+AA +   ++   LL        + D    TA+H A    
Sbjct: 93  LGK-GAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAK-DHYEATAMHRAAAKG 150
Query: 178 SCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTA 237
           + +++ +LL   A+   + D  GNT LH+A  ++R E    L+S    ++    ++ KT 
Sbjct: 151 NLKMIHILLYYKAS-TNIQDTEGNTPLHLACDEERVEEAKLLVS-QGASIYIENKEEKTP 208
Query: 238 LDIAEG 243
           L +A+G
Sbjct: 209 LQVAKG 214

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/102 (35%), Positives = 50/102 (49%), Gaps = 2/102 (1%)
Query: 140 ARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKF 199
           A  G ++ +K  +  D  LA RTD+  +TALH A      E+V+ LL+     V   D  
Sbjct: 14  AYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP-VNDKDDA 72
Query: 200 GNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 241
           G + LH+A    R EIV  LL      VNA+ ++  T L  A
Sbjct: 73  GWSPLHIAASAGRDEIVKALLG-KGAQVNAVNQNGCTPLHYA 113

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 62.0 bits (149), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 43/125 (34%), Positives = 68/125 (54%), Gaps = 3/125 (2%)
Query: 61  NRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSK 120
           + SG  PLH+AA  GH  IV+VLL H   ++       +TPL  AA  GH  +V E+L K
Sbjct: 44  DASGLTPLHLAATYGHLEIVEVLLKHGADVNAID-IXGSTPLHLAALIGHLEIV-EVLLK 101
Query: 121 DGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCE 180
            G  +    + G   LH AA  GH+++V+ LL     +  + DK G+TA  +++   + +
Sbjct: 102 HGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQ-DKFGKTAFDISIDNGNED 160
Query: 181 VVKLL 185
           + ++L
Sbjct: 161 LAEIL 165

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 43/124 (34%), Positives = 60/124 (48%), Gaps = 3/124 (2%)
Query: 92  QTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKAL 151
             T  S  TPL  AAT GH  +V E+L K G  +      G   LH AA  GH+++V+ L
Sbjct: 41  NATDASGLTPLHLAATYGHLEIV-EVLLKHGADVNAIDIXGSTPLHLAALIGHLEIVEVL 99
Query: 152 LSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKK 211
           L     +    D  G T LH+A      E+V++LL+   A V   DKFG TA  ++    
Sbjct: 100 LKHGADV-NAVDTWGDTPLHLAAIMGHLEIVEVLLK-HGADVNAQDKFGKTAFDISIDNG 157
Query: 212 RTEI 215
             ++
Sbjct: 158 NEDL 161

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 61.6 bits (148), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 43/125 (34%), Positives = 68/125 (54%), Gaps = 3/125 (2%)
Query: 61  NRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSK 120
           + SG  PLH+AA  GH  IV+VLL H   ++       +TPL  AA  GH  +V E+L K
Sbjct: 44  DASGLTPLHLAATYGHLEIVEVLLKHGADVNAID-IMGSTPLHLAALIGHLEIV-EVLLK 101
Query: 121 DGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCE 180
            G  +    + G   LH AA  GH+++V+ LL     +  + DK G+TA  +++   + +
Sbjct: 102 HGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQ-DKFGKTAFDISIDNGNED 160
Query: 181 VVKLL 185
           + ++L
Sbjct: 161 LAEIL 165

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 55.8 bits (133), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 43/124 (34%), Positives = 60/124 (48%), Gaps = 3/124 (2%)
Query: 92  QTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKAL 151
             T  S  TPL  AAT GH  +V E+L K G  +      G   LH AA  GH+++V+ L
Sbjct: 41  NATDASGLTPLHLAATYGHLEIV-EVLLKHGADVNAIDIMGSTPLHLAALIGHLEIVEVL 99
Query: 152 LSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKK 211
           L     +    D  G T LH+A      E+V++LL+   A V   DKFG TA  ++    
Sbjct: 100 LKHGADV-NAVDTWGDTPLHLAAIMGHLEIVEVLLK-HGADVNAQDKFGKTAFDISIDNG 157
Query: 212 RTEI 215
             ++
Sbjct: 158 NEDL 161

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 52/147 (35%), Positives = 72/147 (48%), Gaps = 4/147 (2%)
Query: 95  GPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSK 154
           G      L+ AA  G    V  +L  +G  +    + G   LH AAR GH+++V+ LL K
Sbjct: 11  GSDLGKKLLEAARAGQDDEV-RILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLL-K 68
Query: 155 DPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTE 214
           +       D  G T LH+A K    E+V++LL+   A V   D  G+T LH+A      E
Sbjct: 69  NGADVNALDFSGSTPLHLAAKRGHLEIVEVLLKY-GADVNADDTIGSTPLHLAADTGHLE 127
Query: 215 IVTELLSLPDTNVNALTRDHKTALDIA 241
           IV  LL     +VNA  +  KTA DI+
Sbjct: 128 IVEVLLKYG-ADVNAQDKFGKTAFDIS 153

>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein Gankyrin, An Interactor Of Rb And Cdk46 Length = 231

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 56/183 (30%), Positives = 85/183 (46%), Gaps = 8/183 (4%)
Query: 67  PLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSK--DGGL 124
           PLH A ++     VQ LL   PSL          PL  + +     + + LLSK  +  L
Sbjct: 5   PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 125 LEISRSNGKNALHFAARQGHVDVVKALLSK--DPQLARRTDKKGQTALHMAVKGQSCEVV 182
            +    +G    H A   G+++VVK+L  +   P L + T+ +G T LH+AV  +  EV 
Sbjct: 65  DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITN-QGVTCLHLAVGKKWFEVS 123
Query: 183 KLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTAL--DI 240
           + L+E + A V + DKF    LH A      +++  L  L  + VN   +   T L   +
Sbjct: 124 QFLIE-NGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHAL 182
Query: 241 AEG 243
           AEG
Sbjct: 183 AEG 185

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/146 (32%), Positives = 72/146 (49%), Gaps = 4/146 (2%)
Query: 6   SGAEFDTEVAEIRSSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGF 65
           +G + +  +     + VN  ++ G T L  AA  GH E+V  LLK+     +  ++  G+
Sbjct: 24  AGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGAD--VNARDTDGW 81
Query: 66  DPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLL 125
            PLH+AA  GH  IV+VLL +   ++        TPL  AA RGH  +V E+L K G  +
Sbjct: 82  TPLHLAADNGHLEIVEVLLKYGADVNAQDA-YGLTPLHLAADRGHLEIV-EVLLKHGADV 139
Query: 126 EISRSNGKNALHFAARQGHVDVVKAL 151
                 GK A   +   G+ D+ + L
Sbjct: 140 NAQDKFGKTAFDISIDNGNEDLAEIL 165

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 45/127 (35%), Positives = 68/127 (53%), Gaps = 7/127 (5%)
Query: 61  NRSGFDPLHIAAVQGHHAIVQVLLDH--DPSLSQTTGPSNATPLVSAATRGHTAVVNELL 118
           +  G  PLH+AA  GH  IV+VLL H  D +   T G    TPL  AA  GH  +V E+L
Sbjct: 44  DDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDG---WTPLHLAADNGHLEIV-EVL 99
Query: 119 SKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQS 178
            K G  +    + G   LH AA +GH+++V+ LL     +    DK G+TA  +++   +
Sbjct: 100 LKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADV-NAQDKFGKTAFDISIDNGN 158
Query: 179 CEVVKLL 185
            ++ ++L
Sbjct: 159 EDLAEIL 165

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/140 (35%), Positives = 69/140 (49%), Gaps = 4/140 (2%)
Query: 102 LVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARR 161
           L+ AA  G    V  +L  +G  +      G   LH AA  GH ++V+ LL     +  R
Sbjct: 18  LLEAARAGQDDEV-RILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNAR 76
Query: 162 TDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLS 221
            D  G T LH+A      E+V++LL+   A V   D +G T LH+A  +   EIV E+L 
Sbjct: 77  -DTDGWTPLHLAADNGHLEIVEVLLKY-GADVNAQDAYGLTPLHLAADRGHLEIV-EVLL 133
Query: 222 LPDTNVNALTRDHKTALDIA 241
               +VNA  +  KTA DI+
Sbjct: 134 KHGADVNAQDKFGKTAFDIS 153

>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With The Proteasome Subunit, Rpt3 Length = 228

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 56/183 (30%), Positives = 85/183 (46%), Gaps = 8/183 (4%)
Query: 67  PLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSK--DGGL 124
           PLH A ++     VQ LL   PSL          PL  + +     + + LLSK  +  L
Sbjct: 5   PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 125 LEISRSNGKNALHFAARQGHVDVVKALLSK--DPQLARRTDKKGQTALHMAVKGQSCEVV 182
            +    +G    H A   G+++VVK+L  +   P L + T+ +G T LH+AV  +  EV 
Sbjct: 65  DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITN-QGVTCLHLAVGKKWFEVS 123
Query: 183 KLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTAL--DI 240
           + L+E + A V + DKF    LH A      +++  L  L  + VN   +   T L   +
Sbjct: 124 QFLIE-NGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHAL 182
Query: 241 AEG 243
           AEG
Sbjct: 183 AEG 185

>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two Different Crystal Forms Length = 243

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 56/183 (30%), Positives = 85/183 (46%), Gaps = 8/183 (4%)
Query: 67  PLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSK--DGGL 124
           PLH A ++     VQ LL   PSL          PL  + +     + + LLSK  +  L
Sbjct: 5   PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 125 LEISRSNGKNALHFAARQGHVDVVKALLSK--DPQLARRTDKKGQTALHMAVKGQSCEVV 182
            +    +G    H A   G+++VVK+L  +   P L + T+ +G T LH+AV  +  EV 
Sbjct: 65  DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITN-QGVTCLHLAVGKKWFEVS 123
Query: 183 KLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTAL--DI 240
           + L+E + A V + DKF    LH A      +++  L  L  + VN   +   T L   +
Sbjct: 124 QFLIE-NGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHAL 182
Query: 241 AEG 243
           AEG
Sbjct: 183 AEG 185

>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And Its Functional Consequences Length = 137

Iteration: 1
 Score = 59.3 bits (142), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 39/94 (41%), Positives = 52/94 (55%), Gaps = 3/94 (3%)
Query: 26  NELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLD 85
           N  GET L  A+ KG I  V  LL+  +   +  K+ +G+ PLH A   GH  +V++LL 
Sbjct: 7   NHRGETLLHIASIKGDIPSVEYLLQNGSDPNV--KDHAGWTPLHEACNHGHLKVVELLLQ 64
Query: 86  HDPSLSQTTGPSNATPLVSAATRGHTAVVNELLS 119
           H  +L  TTG  N +PL  AA  GH  +V  LLS
Sbjct: 65  HK-ALVNTTGYQNDSPLHDAAKNGHVDIVKLLLS 97

>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And Its Functional Consequences Length = 137

Iteration: 1
 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 38/95 (40%), Positives = 51/95 (53%), Gaps = 6/95 (6%)
Query: 61  NRSGFDPLHIAAVQGHHAIVQVLLDH--DPSLSQTTGPSNATPLVSAATRGHTAVVNELL 118
           N  G   LHIA+++G    V+ LL +  DP++    G    TPL  A   GH  VV ELL
Sbjct: 7   NHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAG---WTPLHEACNHGHLKVV-ELL 62
Query: 119 SKDGGLLEISRSNGKNALHFAARQGHVDVVKALLS 153
            +   L+  +     + LH AA+ GHVD+VK LLS
Sbjct: 63  LQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLS 97

>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein Length = 201

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 58/189 (30%), Positives = 91/189 (48%), Gaps = 8/189 (4%)
Query: 32  ALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLS 91
           AL  AA++   + V E+L+ +T + +   +  G  PL+IA       I + L+D    ++
Sbjct: 8   ALLEAANQRDTKKVKEILQDTTYQ-VDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADIN 66
Query: 92  QTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKAL 151
                S+ +P + A  +G T ++  +L      L      G NAL  AA +GH+D VK L
Sbjct: 67  LQNSISD-SPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLL 125
Query: 152 LSKDPQLARRTDKKGQTALHMAV---KGQSC--EVVKLLLEADAAIVMLPDKFGNTALHV 206
           L    +     +  G TAL  AV   +G     ++VKLL+E + A   + D  G TA+  
Sbjct: 126 LEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLME-NGADQSIKDNSGRTAMDY 184
Query: 207 ATRKKRTEI 215
           A +K  TEI
Sbjct: 185 ANQKGYTEI 193

>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats Length = 276

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 58/212 (27%), Positives = 91/212 (42%), Gaps = 32/212 (15%)
Query: 10  FDTEVAEIRSSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLH 69
           F    A +   VVN  +  G TAL  +    +  VV +LL     + + ++NR+G+ P+ 
Sbjct: 92  FRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCK-VDKQNRAGYSPIM 150
Query: 70  IAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISR 129
           +                             T L +  T+     V +L  + G +   + 
Sbjct: 151 L-----------------------------TALATLKTQDDIETVLQLF-RLGNINAKAS 180
Query: 130 SNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEAD 189
             G+ AL  A   G VDVVKALL+ +  +  + D  G TAL  A +    E+  LLL   
Sbjct: 181 QAGQTALMLAVSHGRVDVVKALLACEADVNVQ-DDDGSTALMCACEHGHKEIAGLLLAVP 239
Query: 190 AAIVMLPDKFGNTALHVATRKKRTEIVTELLS 221
           +  + L D+ G+TAL VA    ++EI + L S
Sbjct: 240 SCDISLTDRDGSTALMVALDAGQSEIASMLYS 271

>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats Length = 276

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/176 (30%), Positives = 85/176 (48%), Gaps = 14/176 (7%)
Query: 83  LLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSN--GKNALHFAA 140
           LLD+  +++ + G    T L  + +  +  VV +LL  D G+ ++ + N  G + +   A
Sbjct: 99  LLDYVVNIADSNGN---TALHYSVSHANFPVVQQLL--DSGVCKVDKQNRAGYSPIMLTA 153
Query: 141 -----RQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVML 195
                 Q  ++ V  L  +   +  +  + GQTAL +AV     +VVK LL  +A  V +
Sbjct: 154 LATLKTQDDIETVLQLF-RLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEAD-VNV 211
Query: 196 PDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEAS 251
            D  G+TAL  A      EI   LL++P  +++   RD  TAL +A     SE AS
Sbjct: 212 QDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIAS 267

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 59/192 (30%), Positives = 92/192 (47%), Gaps = 14/192 (7%)
Query: 20  SVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAI 79
           S+    ++   TAL  A   GH E+V  LL+      +  K+ +G+ PLHIAA  G   I
Sbjct: 31  SLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP--VNDKDDAGWSPLHIAASAGRDEI 88
Query: 80  VQVLL---DHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSN-GKNA 135
           V+ LL    H  +++Q    +  TPL  AA++    +   LL  +GG    ++ +    A
Sbjct: 89  VKALLVKGAHVNAVNQ----NGCTPLHYAASKNRHEIAVMLL--EGGANPDAKDHYDATA 142
Query: 136 LHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVML 195
           +H AA +G++ +V  LL          D +G T LH+A   +  E  K L+   A+I  +
Sbjct: 143 MHRAAAKGNLKMVHILLFYKAS-TNIQDTEGNTPLHLACDEERVEEAKFLVTQGASI-YI 200
Query: 196 PDKFGNTALHVA 207
            +K   T L VA
Sbjct: 201 ENKEEKTPLQVA 212

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 61/206 (29%), Positives = 93/206 (45%), Gaps = 21/206 (10%)
Query: 58  TRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNEL 117
           TR ++     LH A   GH  IV+ LL     ++     +  +PL  AA+ G   +V  L
Sbjct: 34  TRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKD-DAGWSPLHIAASAGRDEIVKAL 92
Query: 118 LSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQ 177
           L K G  +     NG   LH+AA +   ++   LL        + D    TA+H A    
Sbjct: 93  LVK-GAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAK-DHYDATAMHRAAAKG 150
Query: 178 SCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTE----IVTELLSLPDTNVNALTRD 233
           + ++V +LL   A+   + D  GNT LH+A  ++R E    +VT+  S+   N     ++
Sbjct: 151 NLKMVHILLFYKAS-TNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIEN-----KE 204
Query: 234 HKTALDIAEG--------LPSSEEAS 251
            KT L +A+G        L   EEAS
Sbjct: 205 EKTPLQVAKGGLGLILKRLAEGEEAS 230

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/102 (36%), Positives = 52/102 (50%), Gaps = 2/102 (1%)
Query: 140 ARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKF 199
           A  G +D +K  +  D  LA RTD+  +TALH A      E+V+ LL+     V   D  
Sbjct: 14  AYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQL-GVPVNDKDDA 72
Query: 200 GNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 241
           G + LH+A    R EIV  LL +   +VNA+ ++  T L  A
Sbjct: 73  GWSPLHIAASAGRDEIVKALL-VKGAHVNAVNQNGCTPLHYA 113

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 59/192 (30%), Positives = 92/192 (47%), Gaps = 14/192 (7%)
Query: 20  SVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAI 79
           S+    ++   TAL  A   GH E+V  LL+      +  K+ +G+ PLHIAA  G   I
Sbjct: 31  SLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP--VNDKDDAGWSPLHIAASAGXDEI 88
Query: 80  VQVLL---DHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSN-GKNA 135
           V+ LL    H  +++Q    +  TPL  AA++    +   LL  +GG    ++ +    A
Sbjct: 89  VKALLVKGAHVNAVNQ----NGCTPLHYAASKNRHEIAVMLL--EGGANPDAKDHYDATA 142
Query: 136 LHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVML 195
           +H AA +G++ +V  LL          D +G T LH+A   +  E  K L+   A+I  +
Sbjct: 143 MHRAAAKGNLKMVHILLFYKAS-TNIQDTEGNTPLHLACDEERVEEAKFLVTQGASI-YI 200
Query: 196 PDKFGNTALHVA 207
            +K   T L VA
Sbjct: 201 ENKEEKTPLQVA 212

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 61/206 (29%), Positives = 93/206 (45%), Gaps = 21/206 (10%)
Query: 58  TRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNEL 117
           TR ++     LH A   GH  IV+ LL     ++     +  +PL  AA+ G   +V  L
Sbjct: 34  TRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKD-DAGWSPLHIAASAGXDEIVKAL 92
Query: 118 LSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQ 177
           L K G  +     NG   LH+AA +   ++   LL        + D    TA+H A    
Sbjct: 93  LVK-GAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAK-DHYDATAMHRAAAKG 150
Query: 178 SCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTE----IVTELLSLPDTNVNALTRD 233
           + ++V +LL   A+   + D  GNT LH+A  ++R E    +VT+  S+   N     ++
Sbjct: 151 NLKMVHILLFYKAS-TNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIEN-----KE 204
Query: 234 HKTALDIAEG--------LPSSEEAS 251
            KT L +A+G        L   EEAS
Sbjct: 205 EKTPLQVAKGGLGLILKRLAEGEEAS 230

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/102 (35%), Positives = 51/102 (50%), Gaps = 2/102 (1%)
Query: 140 ARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKF 199
           A  G +D +K  +  D  LA RTD+  +TALH A      E+V+ LL+     V   D  
Sbjct: 14  AYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQL-GVPVNDKDDA 72
Query: 200 GNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 241
           G + LH+A      EIV  LL +   +VNA+ ++  T L  A
Sbjct: 73  GWSPLHIAASAGXDEIVKALL-VKGAHVNAVNQNGCTPLHYA 113

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 39/108 (36%), Positives = 59/108 (54%), Gaps = 3/108 (2%)
Query: 100 TPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLA 159
           TPL  AA  GH  +V E+L ++G  +    +NG   LH AA  GH+++V+ LL     + 
Sbjct: 37  TPLHMAAAVGHLEIV-EVLLRNGADVNAVDTNGTTPLHLAASLGHLEIVEVLLKYGADVN 95
Query: 160 RRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVA 207
            + D  G T L++A      E+V++LL+   A V   DKFG TA  ++
Sbjct: 96  AK-DATGITPLYLAAYWGHLEIVEVLLK-HGADVNAQDKFGKTAFDIS 141

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/122 (35%), Positives = 64/122 (52%), Gaps = 4/122 (3%)
Query: 132 GKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAA 191
           G+  LH AA  GH+++V+ LL     +    D  G T LH+A      E+V++LL+   A
Sbjct: 35  GRTPLHMAAAVGHLEIVEVLLRNGADV-NAVDTNGTTPLHLAASLGHLEIVEVLLKY-GA 92
Query: 192 IVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEAS 251
            V   D  G T L++A      EIV E+L     +VNA  +  KTA DI+  +  +E+ +
Sbjct: 93  DVNAKDATGITPLYLAAYWGHLEIV-EVLLKHGADVNAQDKFGKTAFDISIDI-GNEDLA 150
Query: 252 EI 253
           EI
Sbjct: 151 EI 152

>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex Length = 282

Iteration: 1
 Score = 55.1 bits (131), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 54/177 (30%), Positives = 76/177 (42%), Gaps = 14/177 (7%)
Query: 26  NELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLD 85
           N+LG+TAL  AA  G    V +L  Y+   G+    R G   LH+A     H    VLL 
Sbjct: 42  NDLGQTALHLAAILGEASTVEKL--YAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQ 99
Query: 86  HDPS---------LSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGL---LEISRSNGK 133
             PS         L+Q+   +  T    AA        NE   +D      LE    +G 
Sbjct: 100 PRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGH 159
Query: 134 NALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADA 190
             LH A      ++V+ L      L +     G+T LH+AV+ Q+  V++LLL+A A
Sbjct: 160 TPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGA 216

>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer Complex Length = 282

Iteration: 1
 Score = 55.1 bits (131), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 54/177 (30%), Positives = 76/177 (42%), Gaps = 14/177 (7%)
Query: 26  NELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLD 85
           N+LG+TAL  AA  G    V +L  Y+   G+    R G   LH+A     H    VLL 
Sbjct: 42  NDLGQTALHLAAILGEASTVEKL--YAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQ 99
Query: 86  HDPS---------LSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGL---LEISRSNGK 133
             PS         L+Q+   +  T    AA        NE   +D      LE    +G 
Sbjct: 100 PRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGH 159
Query: 134 NALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADA 190
             LH A      ++V+ L      L +     G+T LH+AV+ Q+  V++LLL+A A
Sbjct: 160 TPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGA 216

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 55.1 bits (131), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 30/65 (46%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Query: 22  VNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQ 81
           VN ++E G T L  AA  GH+E+V  LLKY     +  ++  G  PLH+AA++GH  IV+
Sbjct: 40  VNALDEDGLTPLHLAAQLGHLEIVEVLLKYGAD--VNAEDNFGITPLHLAAIRGHLEIVE 97
Query: 82  VLLDH 86
           VLL H
Sbjct: 98  VLLKH 102

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 39/103 (37%), Positives = 55/103 (53%), Gaps = 3/103 (2%)
Query: 139 AARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDK 198
           AAR G  D V+ L++    +    D+ G T LH+A +    E+V++LL+   A V   D 
Sbjct: 21  AARAGQDDEVRILMANGADV-NALDEDGLTPLHLAAQLGHLEIVEVLLKY-GADVNAEDN 78
Query: 199 FGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 241
           FG T LH+A  +   EIV  LL     +VNA  +  KTA DI+
Sbjct: 79  FGITPLHLAAIRGHLEIVEVLLK-HGADVNAQDKFGKTAFDIS 120

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/145 (31%), Positives = 73/145 (50%), Gaps = 4/145 (2%)
Query: 71  AAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRS 130
           AA  G    V++L+ +   ++ T   +  TPL  AA  G   +V E+L K+G  +  S S
Sbjct: 13  AAAAGQDDEVRILMANGADVNATD-DNGLTPLHLAAANGQLEIV-EVLLKNGADVNASDS 70
Query: 131 NGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADA 190
            G   LH AA  GH+++V+ LL     +    D+ G T LH+A      E+V++LL+   
Sbjct: 71  AGITPLHLAAYDGHLEIVEVLLKHGADV-NAYDRAGWTPLHLAALSGQLEIVEVLLK-HG 128
Query: 191 AIVMLPDKFGNTALHVATRKKRTEI 215
           A V   D  G TA  ++  + + ++
Sbjct: 129 ADVNAQDALGLTAFDISINQGQEDL 153

>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive Signaling State Length = 337

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 68/256 (26%), Positives = 96/256 (37%), Gaps = 51/256 (19%)
Query: 33  LFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDH--DPSL 90
           L  A     +++V +LL+        ++   G+ PLH A       IV++LL H  DP L
Sbjct: 29  LIKAVQNEDVDLVQQLLEGGANVNF-QEEEGGWTPLHNAVQMSREDIVELLLRHGADPVL 87
Query: 91  SQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEIS---------------------- 128
            +  G   ATP + AA  G   ++   LSK   + E                        
Sbjct: 88  RKKNG---ATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFL 144
Query: 129 --------------------RSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQT 168
                               R  G  AL  AA +GHV+V+K LL +        D  G+ 
Sbjct: 145 YKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRN 204
Query: 169 ALHMAV---KGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDT 225
           AL  A+        E +  LL    A V +  + G T L +A  KK   +V  LL     
Sbjct: 205 ALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHI 264
Query: 226 NVNALTRDHKTALDIA 241
            +N    D KTAL +A
Sbjct: 265 EINDTDSDGKTALLLA 280

>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease Length = 285

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 68/256 (26%), Positives = 96/256 (37%), Gaps = 51/256 (19%)
Query: 33  LFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDH--DPSL 90
           L  A     +++V +LL+        ++   G+ PLH A       IV++LL H  DP L
Sbjct: 9   LIKAVQNEDVDLVQQLLEGGANVNF-QEEEGGWTPLHNAVQMSREDIVELLLRHGADPVL 67
Query: 91  SQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEIS---------------------- 128
            +  G   ATP + AA  G   ++   LSK   + E                        
Sbjct: 68  RKKNG---ATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFL 124
Query: 129 --------------------RSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQT 168
                               R  G  AL  AA +GHV+V+K LL +        D  G+ 
Sbjct: 125 YKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRN 184
Query: 169 ALHMAV---KGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDT 225
           AL  A+        E +  LL    A V +  + G T L +A  KK   +V  LL     
Sbjct: 185 ALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHI 244
Query: 226 NVNALTRDHKTALDIA 241
            +N    D KTAL +A
Sbjct: 245 EINDTDSDGKTALLLA 260

>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex Length = 236

Iteration: 1
 Score = 52.4 bits (124), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 44/143 (30%), Positives = 67/143 (46%), Gaps = 10/143 (6%)
Query: 57  LTRKNRSGFDPLHIAAVQGHHAIVQVLLD--HDPSLSQTTGPSNATPLVSAATRGHTAVV 114
           L  +N     PLH+A +     I + LL    DP L    G    TPL  A  +G  A V
Sbjct: 38  LNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRG---NTPLHLACEQGCLASV 94
Query: 115 NELLSKDG-----GLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTA 169
             L           +L+ +  NG   LH A+  G++ +V+ L+S    +  +    G+TA
Sbjct: 95  GVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTA 154
Query: 170 LHMAVKGQSCEVVKLLLEADAAI 192
           LH+AV  Q+ ++V LLL+  A +
Sbjct: 155 LHLAVDLQNPDLVSLLLKCGADV 177

>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213

Iteration: 1
 Score = 52.0 bits (123), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 44/143 (30%), Positives = 67/143 (46%), Gaps = 10/143 (6%)
Query: 57  LTRKNRSGFDPLHIAAVQGHHAIVQVLLD--HDPSLSQTTGPSNATPLVSAATRGHTAVV 114
           L  +N     PLH+A +     I + LL    DP L    G    TPL  A  +G  A V
Sbjct: 35  LNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRG---NTPLHLACEQGCLASV 91
Query: 115 NELLSKDG-----GLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTA 169
             L           +L+ +  NG   LH A+  G++ +V+ L+S    +  +    G+TA
Sbjct: 92  GVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTA 151
Query: 170 LHMAVKGQSCEVVKLLLEADAAI 192
           LH+AV  Q+ ++V LLL+  A +
Sbjct: 152 LHLAVDLQNPDLVSLLLKCGADV 174

>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And The Myosin Phosphatase Targeting Subunit 1 (mypt1) Length = 299

Iteration: 1
 Score = 51.6 bits (122), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 62/232 (26%), Positives = 104/232 (44%), Gaps = 27/232 (11%)
Query: 18  RSSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHH 77
           R + +N  N  G TAL  A    ++++V  L++      + + +  G+ PLH AA  G+ 
Sbjct: 62  RGADINYANVDGLTALHQACIDDNVDMVKFLVENGAN--INQPDNEGWIPLHAAASCGYL 119
Query: 78  AIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALH 137
            I + L+     +       + TPL  A       ++   +++ G  +E +R   +  + 
Sbjct: 120 DIAEYLISQGAHVGAVNSEGD-TPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIML 178
Query: 138 FAARQ----GHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIV 193
             ARQ    GH++ V            R  K G TALH+A      EV+KLL++A    V
Sbjct: 179 RDARQWLNSGHINDV------------RHAKSGGTALHVAAAKGYTEVLKLLIQA-RYDV 225
Query: 194 MLPDKFGNTALHVATRKKRTE---IVTELLSLPDTNVNALTRDHKTALDIAE 242
            + D  G T LH A    + E   I+ E L     ++ A+ +  +TA D+A+
Sbjct: 226 NIKDYDGWTPLHAAAHWGKEEACRILVENL----CDMEAVNKVGQTAFDVAD 273

>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 110

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/69 (46%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 139 AARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDK 198
           AAR G  D V+ L++    +A + DK G T LH+A +    EVVKLLLEA  A V   DK
Sbjct: 31  AARAGQDDEVRILMANGADVAAK-DKNGSTPLHLAARNGHLEVVKLLLEA-GADVXAQDK 88
Query: 199 FGNTALHVA 207
           FG TA  ++
Sbjct: 89  FGKTAFDIS 97

>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 92

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/69 (46%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 139 AARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDK 198
           AAR G  D V+ L++    +A + DK G T LH+A +    EVVKLLLEA  A V   DK
Sbjct: 13  AARAGQDDEVRILMANGADVAAK-DKNGSTPLHLAARNGHLEVVKLLLEA-GADVNAQDK 70
Query: 199 FGNTALHVA 207
           FG TA  ++
Sbjct: 71  FGKTAFDIS 79

>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 183

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 81/174 (46%), Gaps = 7/174 (4%)
Query: 52  STKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHT 111
           S++E L  +  +    +H  A QG    +   ++ +  ++ T      TPL+ AA  G  
Sbjct: 8   SSRENLYFQGANSLS-VHQLAAQGEMLYLATRIEQENVINHTD-EEGFTPLMWAAAHGQI 65
Query: 112 AVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALH 171
           AVV E L ++G   ++     ++AL  A  +G+ D+VK LL     +    D  G T L 
Sbjct: 66  AVV-EFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDV-NEYDWNGGTPLL 123
Query: 172 MAVKGQSCEVVKLLLEADAAIVMLPDKFGNT---ALHVATRKKRTEIVTELLSL 222
            AV G   + VK+LLE+ A   +  D   N+   A+ +  R  +  I + LL L
Sbjct: 124 YAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKL 177

>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 167

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 74/158 (46%), Gaps = 6/158 (3%)
Query: 68  LHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEI 127
           +H  A QG    +   ++ +  ++ T      TPL+ AA  G  AVV E L ++G   ++
Sbjct: 7   VHQLAAQGEMLYLATRIEQENVINHTD-EEGFTPLMWAAAHGQIAVV-EFLLQNGADPQL 64
Query: 128 SRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLE 187
                ++AL  A  +G+ D+VK LL     +    D  G T L  AV G   + VK+LLE
Sbjct: 65  LGKGRESALSLACSKGYTDIVKMLLDCGVDV-NEYDWNGGTPLLYAVHGNHVKCVKMLLE 123
Query: 188 ADAAIVMLPDKFGNT---ALHVATRKKRTEIVTELLSL 222
           + A   +  D   N+   A+ +  R  +  I + LL L
Sbjct: 124 SGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKL 161

>pdb|3SO8|A Chain A, Crystal Structure Of Ankra Length = 162

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/126 (33%), Positives = 62/126 (49%), Gaps = 5/126 (3%)
Query: 100 TPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLA 159
           TPL+ AA  G  AVV E L ++G   ++     ++AL  A  +G+ D+VK LL     + 
Sbjct: 36  TPLMWAAAHGQIAVV-EFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDV- 93
Query: 160 RRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNT---ALHVATRKKRTEIV 216
              D  G T L  AV G   + VK+LLE+ A   +  D   N+   A+ +  R  +  I 
Sbjct: 94  NEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIE 153
Query: 217 TELLSL 222
           + LL L
Sbjct: 154 SHLLKL 159

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 39/103 (37%), Positives = 55/103 (53%), Gaps = 3/103 (2%)
Query: 139 AARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDK 198
           AAR G  D V+ L++    +    D+KG T LH+A      E+V++LL+   A V   D 
Sbjct: 21  AARAGQDDEVRILMANGADV-NANDRKGNTPLHLAADYDHLEIVEVLLKH-GADVNAHDN 78
Query: 199 FGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 241
            G+T LH+A      EIV E+L     +VNA  +  KTA DI+
Sbjct: 79  DGSTPLHLAALFGHLEIV-EVLLKHGADVNAQDKFGKTAFDIS 120

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 48.5 bits (114), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Query: 22  VNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQ 81
           VN +++ G T L  AA +GH+E+V  LLK+     +  ++  G  PLH+AA  GH  IV+
Sbjct: 40  VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGAD--VNARDIWGRTPLHLAATVGHLEIVE 97
Query: 82  VLLDH 86
           VLL++
Sbjct: 98  VLLEY 102

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 44/76 (57%), Gaps = 2/76 (2%)
Query: 132 GKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAA 191
           G   LH AA++GH+++V+ LL     +  R D  G+T LH+A      E+V++LLE   A
Sbjct: 47  GVTPLHLAAKRGHLEIVEVLLKHGADVNAR-DIWGRTPLHLAATVGHLEIVEVLLEY-GA 104
Query: 192 IVMLPDKFGNTALHVA 207
            V   DKFG TA  ++
Sbjct: 105 DVNAQDKFGKTAFDIS 120

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 22  VNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQ 81
           VN +++ G T L  AA +GH+E+V  LLK+     +   +  G  PLH+AA  GH  IV+
Sbjct: 40  VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGAD--VNASDSWGRTPLHLAATVGHLEIVE 97
Query: 82  VLLDH 86
           VLL++
Sbjct: 98  VLLEY 102

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 48/91 (52%), Gaps = 2/91 (2%)
Query: 132 GKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAA 191
           G   LH AA++GH+++V+ LL     +   +D  G+T LH+A      E+V++LLE   A
Sbjct: 47  GVTPLHLAAKRGHLEIVEVLLKHGADV-NASDSWGRTPLHLAATVGHLEIVEVLLEY-GA 104
Query: 192 IVMLPDKFGNTALHVATRKKRTEIVTELLSL 222
            V   DKFG TA  ++      ++   L  L
Sbjct: 105 DVNAQDKFGKTAFDISIDNGNEDLAEILQKL 135

>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor Length = 222

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 101 PLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLAR 160
           PL  AA RG+ + + E L    G+  + ++ G  AL++A   GH D+V+ L ++      
Sbjct: 76  PLHEAAKRGNLSWLRECLDNRVGVNGLDKA-GSTALYWACHGGHKDIVEXLFTQPNIELN 134
Query: 161 RTDKKGQTALHMAVKGQSCEVVKLLL 186
           + +K G TALH A      ++V+LLL
Sbjct: 135 QQNKLGDTALHAAAWKGYADIVQLLL 160

>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor Length = 222

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 134 NALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIV 193
           N LH AA++G++  ++  L     +    DK G TAL+ A  G   ++V+ L       +
Sbjct: 75  NPLHEAAKRGNLSWLRECLDNRVGV-NGLDKAGSTALYWACHGGHKDIVEXLFTQPNIEL 133
Query: 194 MLPDKFGNTALHVATRKKRTEIVTELLS 221
              +K G+TALH A  K   +IV  LL+
Sbjct: 134 NQQNKLGDTALHAAAWKGYADIVQLLLA 161

>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar Affinity To Her2 Length = 136

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/65 (43%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 22  VNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQ 81
           VN  +E G T L+ A   GH+E+V  LLK      +   +  GF PLH+AA  GH  I +
Sbjct: 40  VNAKDEYGLTPLYLATAHGHLEIVEVLLKNGAD--VNAVDAIGFTPLHLAAFIGHLEIAE 97
Query: 82  VLLDH 86
           VLL H
Sbjct: 98  VLLKH 102

>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar Affinity To Her2 Length = 136

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/115 (34%), Positives = 61/115 (53%), Gaps = 4/115 (3%)
Query: 139 AARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDK 198
           AAR G  D V+ L++    +  + D+ G T L++A      E+V++LL+ + A V   D 
Sbjct: 21  AARAGQDDEVRILMANGADVNAK-DEYGLTPLYLATAHGHLEIVEVLLK-NGADVNAVDA 78
Query: 199 FGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEI 253
            G T LH+A      EI  E+L     +VNA  +  KTA DI+ G   +E+ +EI
Sbjct: 79  IGFTPLHLAAFIGHLEI-AEVLLKHGADVNAQDKFGKTAFDISIG-NGNEDLAEI 131

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 22  VNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQ 81
           VN +++ G T L  AA +GH+E+V  LLK+     +   +  G  PLH+AA  GH  IV+
Sbjct: 40  VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGAD--VNASDIWGRTPLHLAATVGHLEIVE 97
Query: 82  VLLDH 86
           VLL++
Sbjct: 98  VLLEY 102

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 44/76 (57%), Gaps = 2/76 (2%)
Query: 132 GKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAA 191
           G   LH AA++GH+++V+ LL     +   +D  G+T LH+A      E+V++LLE   A
Sbjct: 47  GVTPLHLAAKRGHLEIVEVLLKHGADV-NASDIWGRTPLHLAATVGHLEIVEVLLEY-GA 104
Query: 192 IVMLPDKFGNTALHVA 207
            V   DKFG TA  ++
Sbjct: 105 DVNAQDKFGKTAFDIS 120

>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex Length = 171

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 64/147 (43%), Gaps = 15/147 (10%)
Query: 22  VNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQ 81
           +N+ ++ G + L  A  +G   VV  L+    +  +   NR    PLH+AA  GH  IVQ
Sbjct: 27  LNQGDDHGFSPLHWACREGRSAVVEMLIMRGAR--INVMNRGDDTPLHLAASHGHRDIVQ 84
Query: 82  VLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAAR 141
            LL +   ++      N  PL  A   G   V  +L++ +G L+ I    G+        
Sbjct: 85  KLLQYKADINAVNEHGN-VPLHYACFWGQDQVAEDLVA-NGALVSICNKYGEMP------ 136
Query: 142 QGHVDVVKALLSKDPQLARRTDKKGQT 168
              VD  KA L +   L  R +K GQ 
Sbjct: 137 ---VDKAKAPLRE--LLRERAEKMGQN 158

>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex Length = 171

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 72/166 (43%), Gaps = 4/166 (2%)
Query: 65  FDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGL 124
            D +     +G+   V++ LD+  +          +PL  A   G +AVV E+L   G  
Sbjct: 1   MDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVV-EMLIMRGAR 59
Query: 125 LEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKL 184
           + +        LH AA  GH D+V+ LL     +    ++ G   LH A      +V + 
Sbjct: 60  INVMNRGDDTPLHLAASHGHRDIVQKLLQYKADI-NAVNEHGNVPLHYACFWGQDQVAED 118
Query: 185 LLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNAL 230
           L+ A+ A+V + +K+G   +  A    R E++ E       N+N +
Sbjct: 119 LV-ANGALVSICNKYGEMPVDKAKAPLR-ELLRERAEKMGQNLNRI 162

>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9 (Hasb9-2), An Ankyrin Repeat Protein Length = 285

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 73/162 (45%), Gaps = 11/162 (6%)
Query: 31  TALFTAADKGHIEVVNELLKYSTK-EGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPS 89
           + L  A   GH+  V  LLK+  +  G+T    +   PL  A V G    V +LL H  S
Sbjct: 94  SPLHEACLGGHLSCVKILLKHGAQVNGVTADWHT---PLFNACVSGSWDCVNLLLQHGAS 150
Query: 90  LSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVK 149
           +   +    A+P+  AA RGH   VN L++  GG ++   S+    L+ A        VK
Sbjct: 151 VQPES--DLASPIHEAARRGHVECVNSLIAY-GGNIDHKISHLGTPLYLACENQQRACVK 207
Query: 150 ALLSKDPQLARRTDKKGQ-TALHMAVKGQSCEVVKLLLEADA 190
            LL      A     KGQ + LH  V+  S E+  LL++  A
Sbjct: 208 KLLESG---ADVNQGKGQDSPLHAVVRTASEELACLLMDFGA 246

>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9 (Hasb9-2), An Ankyrin Repeat Protein Length = 285

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 49/193 (25%), Positives = 78/193 (40%), Gaps = 39/193 (20%)
Query: 63  SGFDPLHIAAVQGHH---------------------------------AIVQVLLDHDPS 89
           S + P+H AA+ GH                                  + V++LL H   
Sbjct: 58  SDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQ 117
Query: 90  LSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVK 149
           ++  T   + TPL +A   G    VN LL    G      S+  + +H AAR+GHV+ V 
Sbjct: 118 VNGVTADWH-TPLFNACVSGSWDCVNLLLQH--GASVQPESDLASPIHEAARRGHVECVN 174
Query: 150 ALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATR 209
           +L++    +  +    G T L++A + Q    VK LLE+ A +     K  ++ LH   R
Sbjct: 175 SLIAYGGNIDHKISHLG-TPLYLACENQQRACVKKLLESGADVNQ--GKGQDSPLHAVVR 231
Query: 210 KKRTEIVTELLSL 222
               E+   L+  
Sbjct: 232 TASEELACLLMDF 244

>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo Form) Length = 175

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 75/170 (44%), Gaps = 10/170 (5%)
Query: 26  NELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLD 85
           N   +  L  AA  G +E V +L    +      + R    PLH AA     ++V+ LL 
Sbjct: 9   NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQST-PLHFAAGYNRVSVVEYLLQ 67
Query: 86  HDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHV 145
           H   +          PL +A + GH  V  ELL K G ++ ++       LH AA +G  
Sbjct: 68  HGADV-HAKDKGGLVPLHNACSYGHYEVA-ELLVKHGAVVNVADLWKFTPLHEAAAKGKY 125
Query: 146 DVVKALLSK--DPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIV 193
           ++ K LL    DP    + ++ G T L +   G +   ++ LL  DAA++
Sbjct: 126 EICKLLLQHGADPT---KKNRDGNTPLDLVKDGDT--DIQDLLRGDAALL 170

>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat Domain In Complex With Pinch1 Lim1 Domain Length = 179

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 64/147 (43%), Gaps = 15/147 (10%)
Query: 22  VNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQ 81
           +N+ ++ G + L  A  +G   VV  L+    +  +   NR    PLH+AA  GH  IVQ
Sbjct: 32  LNQGDDHGFSPLHWACREGRSAVVEMLIMRGAR--INVMNRGDDTPLHLAASHGHRDIVQ 89
Query: 82  VLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAAR 141
            LL +   ++      N  PL  A   G   V  +L++ +G L+ I    G+        
Sbjct: 90  KLLQYKADINAVNEHGN-VPLHYACFWGQDQVAEDLVA-NGALVSICNKYGEMP------ 141
Query: 142 QGHVDVVKALLSKDPQLARRTDKKGQT 168
              VD  KA L +   L  R +K GQ 
Sbjct: 142 ---VDKAKAPLRE--LLRERAEKMGQN 163

>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat Domain In Complex With Pinch1 Lim1 Domain Length = 179

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 72/166 (43%), Gaps = 4/166 (2%)
Query: 65  FDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGL 124
            D +     +G+   V++ LD+  +          +PL  A   G +AVV E+L   G  
Sbjct: 6   MDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVV-EMLIMRGAR 64
Query: 125 LEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKL 184
           + +        LH AA  GH D+V+ LL     +    ++ G   LH A      +V + 
Sbjct: 65  INVMNRGDDTPLHLAASHGHRDIVQKLLQYKADI-NAVNEHGNVPLHYACFWGQDQVAED 123
Query: 185 LLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNAL 230
           L+ A+ A+V + +K+G   +  A    R E++ E       N+N +
Sbjct: 124 LV-ANGALVSICNKYGEMPVDKAKAPLR-ELLRERAEKMGQNLNRI 167

>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs Box-containing Protein 9 (asb9) In Complex With Elonginb And Elonginc Length = 261

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/193 (25%), Positives = 81/193 (41%), Gaps = 39/193 (20%)
Query: 63  SGFDPLHIAAVQGHH---------------------------------AIVQVLLDHDPS 89
           S + P+H AA+ GH                                  + V++LL H   
Sbjct: 2   SDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQ 61
Query: 90  LSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVK 149
           ++  T   + TPL +A   G    VN LL + G  ++   S+  + +H AAR+GHV+ V 
Sbjct: 62  VNGVTADWH-TPLFNACVSGSWDCVN-LLLQHGASVQ-PESDLASPIHEAARRGHVECVN 118
Query: 150 ALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATR 209
           +L++    +  +    G T L++A + Q    VK LLE+ A +     K  ++ LH   R
Sbjct: 119 SLIAYGGNIDHKISHLG-TPLYLACENQQRACVKKLLESGADVNQ--GKGQDSPLHAVAR 175
Query: 210 KKRTEIVTELLSL 222
               E+   L+  
Sbjct: 176 TASEELACLLMDF 188

>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 153

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/110 (36%), Positives = 54/110 (49%), Gaps = 3/110 (2%)
Query: 132 GKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAA 191
           G + LH AA+ GH    + LL        RT K  +T LHMA       +V++LL+   A
Sbjct: 34  GTSPLHLAAQYGHFSTTEVLLRAGVSRDART-KVDRTPLHMAASEGHANIVEVLLK-HGA 91
Query: 192 IVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 241
            V   D    TALH AT     E+V ELL     +V+  ++  KTA DI+
Sbjct: 92  DVNAKDMLKMTALHWATEHNHQEVV-ELLIKYGADVHTQSKFCKTAFDIS 140

>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human 3bp2 Length = 165

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 74/169 (43%), Gaps = 10/169 (5%)
Query: 26  NELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLD 85
           N   +  L  AA  G +E V +L    +      + R    PLH AA     ++V+ LL 
Sbjct: 5   NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQST-PLHFAAGYNRVSVVEYLLQ 63
Query: 86  HDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHV 145
           H   +          PL +A + GH  V  ELL K G ++ ++       LH AA +G  
Sbjct: 64  HGADV-HAKDKGGLVPLHNACSYGHYEVA-ELLVKHGAVVNVADLWKFTPLHEAAAKGKY 121
Query: 146 DVVKALLSK--DPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAI 192
           ++ K LL    DP    + ++ G T L +   G +   ++ LL  DAA+
Sbjct: 122 EICKLLLQHGADPT---KKNRDGNTPLDLVKDGDT--DIQDLLRGDAAL 165

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/128 (30%), Positives = 60/128 (46%), Gaps = 3/128 (2%)
Query: 95  GPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSK 154
           G      L+ AA  G    V  +L+ +G  +  +   G   LH AA  GH+++V+ LL K
Sbjct: 11  GSDLGKKLLEAARAGQDDEV-RILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLL-K 68
Query: 155 DPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTE 214
           +      T   G+T LH+A      E+V++LL+   A V   DKFG TA  ++      +
Sbjct: 69  NGADVNATGNTGRTPLHLAAWADHLEIVEVLLKH-GADVNAQDKFGKTAFDISIDNGNED 127
Query: 215 IVTELLSL 222
           +   L  L
Sbjct: 128 LAEILQKL 135

>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex Length = 351

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 62/215 (28%), Positives = 94/215 (43%), Gaps = 24/215 (11%)
Query: 31  TALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSL 90
           T L  AA    + +V  LL++     +  K++ G  PLH A   GH+ + ++LL H   +
Sbjct: 60  TPLHLAAGYNRVRIVQLLLQHGAD--VHAKDKGGLVPLHNACSYGHYEVTELLLKHGACV 117
Query: 91  SQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKA 150
           +        TPL  AA++    V + LLS  G    +   +GK+A         VD    
Sbjct: 118 N-AMDLWQFTPLHEAASKNRVEVCSLLLSH-GADPTLVNCHGKSA---------VD---- 162
Query: 151 LLSKDPQLARR--TDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALH--V 206
            ++  P+L  R   + KG + L  A +    +V K L  A   I     +   TALH  V
Sbjct: 163 -MAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTL--ALEIINFKQPQSHETALHCAV 219
Query: 207 ATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 241
           A+   + + V ELL     NVN   +D  T L +A
Sbjct: 220 ASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVA 254

>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human Mcl1 Length = 167

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 74/169 (43%), Gaps = 10/169 (5%)
Query: 26  NELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLD 85
           N   +  L  AA  G +E V +L    +      + R    PLH AA     ++V+ LL 
Sbjct: 7   NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQST-PLHFAAGYNRVSVVEYLLQ 65
Query: 86  HDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHV 145
           H   +          PL +A + GH  V  ELL K G ++ ++       LH AA +G  
Sbjct: 66  HGADV-HAKDKGGLVPLHNACSYGHYEVA-ELLVKHGAVVNVADLWKFTPLHEAAAKGKY 123
Query: 146 DVVKALLSK--DPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAI 192
           ++ K LL    DP    + ++ G T L +   G +   ++ LL  DAA+
Sbjct: 124 EICKLLLQHGADPT---KKNRDGNTPLDLVKDGDT--DIQDLLRGDAAL 167

>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From Lactococcal Phage Tp901-1 Length = 136

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 38/103 (36%), Positives = 52/103 (50%), Gaps = 3/103 (2%)
Query: 139 AARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDK 198
           AAR G  D V+ L++    +    DK G T LH+A      E+V++LL+ + A V   D 
Sbjct: 21  AARAGQDDEVRILMANGADV-NAEDKVGLTPLHLAAMNDHLEIVEVLLK-NGADVNAIDA 78
Query: 199 FGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 241
            G T LH+       EIV  LL     +VNA  +  KTA DI+
Sbjct: 79  IGETPLHLVAMYGHLEIVEVLLK-HGADVNAQDKFGKTAFDIS 120

>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Rfxank Length = 172

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 38/120 (31%), Positives = 57/120 (47%), Gaps = 7/120 (5%)
Query: 57  LTRKNRSGFDPLHIAAVQGHHAIVQVLLDH--DPSLSQTTGPSNATPLVSAATRGHTAVV 114
           + + +  GF PL  A+  G    V+ LL+   DP +         + L  A+T G+T +V
Sbjct: 29  VNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHI---LAKERESALSLASTGGYTDIV 85
Query: 115 NELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAV 174
             LL +D  +  I   NG   L +A R  HV  V+ALL++   L    D  G T + +AV
Sbjct: 86  GLLLERDVDI-NIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEAD-SGYTPMDLAV 143

>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch Receptor Length = 239

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 63/132 (47%), Gaps = 10/132 (7%)
Query: 60  KNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLS 119
           ++ +G  PLH A       + Q+LL +  +          TPL+ AA      +V +L++
Sbjct: 80  QDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLIT 139
Query: 120 KDGGLLEISRSNGKNALHFAARQGHVDVVKALL----SKDPQLARRTDKKGQTALHMAVK 175
            D   +  + ++GK ALH+AA   + + V  LL    ++D Q     D K +T L +A +
Sbjct: 140 ADAD-INAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQ-----DDKDETPLFLAAR 193
Query: 176 GQSCEVVKLLLE 187
             S E  K LL+
Sbjct: 194 EGSYEASKALLD 205

>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43 Length = 244

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/109 (34%), Positives = 54/109 (49%), Gaps = 5/109 (4%)
Query: 100 TPLVSAATRGHTAVVNELL-SKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQL 158
           TP  +AA +     +++LL  +D   ++    NG+ AL F A  G    V+ L      L
Sbjct: 47  TPWWTAARKADEQALSQLLEDRD---VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADL 103
Query: 159 ARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVA 207
             R  + G TALHMA      EVV+ L+E  A I  + D+ G TAL +A
Sbjct: 104 DHRDMRGGLTALHMAAGYVRPEVVEALVELGADI-EVEDERGLTALELA 151

>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain Length = 210

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 1/98 (1%)
Query: 147 VVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHV 206
           V+   + +   L  +TD+ G+TALH+A +    +  K LLEA +A   + D  G T LH 
Sbjct: 3   VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEA-SADAXIQDNMGRTPLHA 61
Query: 207 ATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGL 244
           A       +   LL    T+++A   D  T L +A  L
Sbjct: 62  AVSADAQGVFQILLRNRATDLDARMHDGTTPLILAARL 99

>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain Length = 232

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 50/205 (24%), Positives = 83/205 (40%), Gaps = 44/205 (21%)
Query: 30  ETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPS 89
           E+ L  AA +  ++ +++LLK+   E + ++   G   LHIAA+  +     VL++  P 
Sbjct: 4   ESPLLLAAKENDVQALSKLLKFEGCE-VHQRGAMGETALHIAALYDNLEAAMVLMEAAPE 62
Query: 90  LSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVK 149
           L          P+ S    G TA                       LH A    +V++V+
Sbjct: 63  LV-------FEPMTSELYEGQTA-----------------------LHIAVINQNVNLVR 92
Query: 150 ALLSKDPQLARRTDKK------------GQTALHMAVKGQSCEVVKLLLEADAAIVMLPD 197
           ALL++   ++ R                G+  L  A    S E+V+LL+E  A I    D
Sbjct: 93  ALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADI-RAQD 151
Query: 198 KFGNTALHVATRKKRTEIVTELLSL 222
             GNT LH+   +       ++ +L
Sbjct: 152 SLGNTVLHILILQPNKTFACQMYNL 176

>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The Chloroplast Signal Recognition Particle Protein Cpsrp43 Length = 183

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/109 (34%), Positives = 54/109 (49%), Gaps = 5/109 (4%)
Query: 100 TPLVSAATRGHTAVVNELL-SKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQL 158
           TP  +AA +     +++LL  +D   ++    NG+ AL F A  G    V+ L      L
Sbjct: 46  TPWWTAARKADEQALSQLLEDRD---VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADL 102
Query: 159 ARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVA 207
             R  + G TALHMA      EVV+ L+E  A I  + D+ G TAL +A
Sbjct: 103 DHRDMRGGLTALHMAAGYVRPEVVEALVELGADI-EVEDERGLTALELA 150

>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From The Structures Cdk6-P19ink4d Inhibitor Complex Length = 166

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 47/153 (30%), Positives = 72/153 (47%), Gaps = 12/153 (7%)
Query: 5   LSGAEFDTEVAEIRSSVVNEV------NELGETALFTAADKGHIEVVNELLKYSTKEGLT 58
           LSGA    +V E+R  +  E+      N  G+TAL      G   +  ELLK      + 
Sbjct: 12  LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASPNV- 69
Query: 59  RKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELL 118
            ++ SG  P+H AA  G    ++VL++H   ++   G + A P+  A   GHTAVV+ L 
Sbjct: 70  -QDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDG-TGALPIHLAVQEGHTAVVSFLA 127
Query: 119 SKDGGLLEISRSNGKNALHFAARQGHVDVVKAL 151
           ++    L    + G   L  A ++G  D+V  L
Sbjct: 128 AESD--LHRRDARGLTPLELALQRGAQDLVDIL 158

>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d Length = 156

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 47/153 (30%), Positives = 72/153 (47%), Gaps = 12/153 (7%)
Query: 5   LSGAEFDTEVAEIRSSVVNEV------NELGETALFTAADKGHIEVVNELLKYSTKEGLT 58
           LSGA    +V E+R  +  E+      N  G+TAL      G   +  ELLK      + 
Sbjct: 6   LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASPNV- 63
Query: 59  RKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELL 118
            ++ SG  P+H AA  G    ++VL++H   ++   G + A P+  A   GHTAVV+ L 
Sbjct: 64  -QDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDG-TGALPIHLAVQEGHTAVVSFLA 121
Query: 119 SKDGGLLEISRSNGKNALHFAARQGHVDVVKAL 151
           ++    L    + G   L  A ++G  D+V  L
Sbjct: 122 AESD--LHRRDARGLTPLELALQRGAQDLVDIL 152

>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank Length = 172

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 56/120 (46%), Gaps = 7/120 (5%)
Query: 57  LTRKNRSGFDPLHIAAVQGHHAIVQVLLDH--DPSLSQTTGPSNATPLVSAATRGHTAVV 114
           + + +  GF PL  A+  G    V+ LL+   DP +         + L  A+T G+T +V
Sbjct: 29  VNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHI---LAKERESALSLASTGGYTDIV 85
Query: 115 NELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAV 174
             LL +D  +  I   NG   L +A    HV  V+ALL++   L    D  G T + +AV
Sbjct: 86  GLLLERDVDI-NIYDWNGGTPLLYAVHGNHVKCVEALLARGADLTTEAD-SGYTPMDLAV 143

>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On Hes-1 Promoter Dna Sequence Length = 256

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 68/157 (43%), Gaps = 15/157 (9%)
Query: 95  GPSNATPLVSAATRGH-------------TAVVNELLSKDGGLLEISRSNGKNALHFAAR 141
           GP   TPL+ A+  G               AV+++ + +   L   +   G+ ALH AAR
Sbjct: 8   GPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAAR 67
Query: 142 QGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGN 201
               D  K LL      A   D  G+T LH AV   +  V ++L+   A  +      G 
Sbjct: 68  YSRSDAAKRLLEASAD-ANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGT 126
Query: 202 TALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTAL 238
           T L +A R     ++ +L++    +VNA+    K+AL
Sbjct: 127 TPLILAARLAVEGMLEDLIN-SHADVNAVDDLGKSAL 162

>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain Length = 253

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 68/157 (43%), Gaps = 15/157 (9%)
Query: 95  GPSNATPLVSAATRG-------------HTAVVNELLSKDGGLLEISRSNGKNALHFAAR 141
           GP   TPL+ A+  G               AV+++ + +   L   +   G+ ALH AAR
Sbjct: 7   GPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAAR 66
Query: 142 QGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGN 201
               D  K LL      A   D  G+T LH AV   +  V ++L+   A  +      G 
Sbjct: 67  YSRSDAAKRLLEASAD-ANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGT 125
Query: 202 TALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTAL 238
           T L +A R     ++ +L++    +VNA+    K+AL
Sbjct: 126 TPLILAARLAVEGMLEDLIN-SHADVNAVDDLGKSAL 161

>pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In Trans State Soaked With Calcium Length = 497

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 116 ELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVK 175
           + + ++GG L+   ++G  ALH+AA     D +K LL K   L    ++ G+TAL +A K
Sbjct: 191 DFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLL-KGRALVGTVNEAGETALDIARK 249
Query: 176 GQSCEVVKLLLEADAAIVMLP 196
               E  +LL +A A     P
Sbjct: 250 KHHKECEELLEQAQAGTFAFP 270

>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module Length = 91

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 3/76 (3%)
Query: 132 GKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAA 191
           GK  L  AAR G  D V+ L++    +  + DK G T LH+A +    E+V++LL+A  A
Sbjct: 3   GKKLLE-AARAGQDDEVRILMANGADVNAK-DKDGYTPLHLAAREGHLEIVEVLLKA-GA 59
Query: 192 IVMLPDKFGNTALHVA 207
            V   DKFG TA  ++
Sbjct: 60  DVNAQDKFGKTAFDIS 75

>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a Resolution. Length = 223

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 47/98 (47%), Gaps = 1/98 (1%)
Query: 147 VVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHV 206
           V+   + +   L  +TD+ G+TALH+A +    +  K LLEA +A   + D  G T LH 
Sbjct: 6   VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEA-SADANIQDNMGRTPLHA 64
Query: 207 ATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGL 244
           A       +   L+    T+++A   D  T L +A  L
Sbjct: 65  AVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARL 102

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	491
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-51
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	1e-25
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	4e-50
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	6e-44
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	4e-34
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-48
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	5e-47
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-47
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-13
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-47
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-46
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	7e-42
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	3e-37
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	5e-33
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-47
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	3e-41
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	3e-38
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-29
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-46
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-43
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	4e-34
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	6e-46
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	5e-40
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	4e-36
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	3e-28
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	7e-45
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	5e-40
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	3e-38
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	3e-30
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	6e-21
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	8e-08
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-05
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	9e-45
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	4e-17
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-44
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	6e-44
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	8e-41
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-37
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	4e-33
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-22
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-44
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	6e-39
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	8e-32
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-30
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	5e-16
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-43
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	5e-41
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	6e-38
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	9e-34
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	4e-06
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	4e-43
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-42
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	5e-41
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	5e-42
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	6e-41
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-39
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-36
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-36
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-31
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-20
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-12
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	8e-42
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-41
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-34
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	3e-25
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-20
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	8e-42
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	2e-21
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	6e-15
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	2e-08
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	3e-41
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	4e-41
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	8e-41
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-37
3hra_A	201	Ankyrin repeat family protein; structural protein;	1e-40
3hra_A	201	Ankyrin repeat family protein; structural protein;	3e-37
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-24
2rfa_A	232	Transient receptor potential cation channel subfa	5e-40
2rfa_A	232	Transient receptor potential cation channel subfa	4e-30
2rfa_A	232	Transient receptor potential cation channel subfa	1e-28
2rfa_A	232	Transient receptor potential cation channel subfa	6e-12
2rfa_A	232	Transient receptor potential cation channel subfa	1e-04
3v30_A	172	DNA-binding protein rfxank; structural genomics co	6e-38
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-37
3v30_A	172	DNA-binding protein rfxank; structural genomics co	5e-33
3v30_A	172	DNA-binding protein rfxank; structural genomics co	7e-31
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	1e-37
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	4e-31
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-37
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-36
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	7e-32
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	3e-37
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	7e-32
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	3e-20
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	3e-12
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	4e-06
2etb_A	256	Transient receptor potential cation channel subfam	3e-35
2etb_A	256	Transient receptor potential cation channel subfam	2e-28
2etb_A	256	Transient receptor potential cation channel subfam	2e-21
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	4e-35
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	3e-31
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	3e-24
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	2e-15
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	3e-14
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	7e-35
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	2e-33
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	3e-22
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	3e-11
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	6e-05
2pnn_A	273	Transient receptor potential cation channel subfa	4e-34
2pnn_A	273	Transient receptor potential cation channel subfa	6e-30
2pnn_A	273	Transient receptor potential cation channel subfa	2e-19
2pnn_A	273	Transient receptor potential cation channel subfa	6e-10
2pnn_A	273	Transient receptor potential cation channel subfa	1e-06
3jxi_A	260	Vanilloid receptor-related osmotically activated p	6e-34
3jxi_A	260	Vanilloid receptor-related osmotically activated p	8e-23
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-33
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-27
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	2e-33
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	2e-27
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	3e-27
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	6e-33
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	2e-28
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	2e-26
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	3e-22
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	4e-11
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	8e-33
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	3e-30
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	3e-24
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	1e-12
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	2e-10
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	6e-32
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	1e-28
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	1e-11
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	2e-07
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	2e-31
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	4e-28
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	9e-24
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	6e-23
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	5e-16
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	6e-30
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	3e-28
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	2e-15
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-29
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	4e-28
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-23
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	9e-20
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	9e-29
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	1e-24
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	4e-23
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	1e-09
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-28
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	7e-28
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	1e-27
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	4e-22
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	3e-26
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	7e-26
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-23
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	3e-19
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	9e-26
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	2e-24
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	2e-17
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	2e-04
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	1e-25
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	6e-24
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	1e-23
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	8e-12
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	2e-24
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	2e-21
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	6e-17
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	2e-23
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	2e-21
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	2e-21
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	3e-04
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	1e-22
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	1e-21
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	9e-21
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	1e-13
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	3e-12
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	3e-22
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	6e-21
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	7e-15
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	4e-12
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	8e-21
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	1e-18
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	2e-16
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	4e-14
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	3e-08
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	2e-20
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	2e-19
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	2e-18
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	9e-13
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	1e-11
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	8e-11
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	1e-08
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	5e-06
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	9e-10
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	7e-08
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	4e-06
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	8e-09
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	2e-08
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	3e-08
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	2e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	1e-06
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	8e-04

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  173 bits (441), Expect = 2e-51
 Identities = 53/219 (24%), Positives = 82/219 (37%), Gaps = 9/219 (4%)

Query: 28  LGETALFTAADKGHIEVVNELLKYSTKEG--LTRKNRSGFDPLHIAAVQGHHAIVQVLLD 85
           +    L  A  +     V ELL     +   L +K++ G  PLH +     H I   LL 
Sbjct: 1   MSNYPLHQACMENEFFKVQELLH---SKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLS 57

Query: 86  H--DPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGL-LEISRSNGKNALHFAARQ 142
              + +L      S  TP   A + G+  VV  L  +     L    + G   LH A  +
Sbjct: 58  KMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGK 117

Query: 143 GHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNT 202
              +V + L+     + R  DK  Q  LH A    S ++++LL     + V   DK G T
Sbjct: 118 KWFEVSQFLIENGASV-RIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWT 176

Query: 203 ALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 241
            L  A  +   +    L+       + +      A D+A
Sbjct: 177 PLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVA 215

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  103 bits (259), Expect = 1e-25
 Identities = 37/171 (21%), Positives = 57/171 (33%), Gaps = 49/171 (28%)

Query: 22  VNEVNELGETALFTAADKGHIEVVNELLKYSTKEG--LTRKNRSGFDPLHIAAVQGHHAI 79
           +N++   G T L  A  K   EV   L++     G  +  K++    PLH AA  G   +
Sbjct: 100 LNKITNQGVTCLHLAVGKKWFEVSQFLIEN----GASVRIKDKFNQIPLHRAASVGSLKL 155

Query: 80  VQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFA 139
           +++L                            + VN    +D          G   L  A
Sbjct: 156 IELLCGL-----------------------GKSAVNW---QD--------KQGWTPLFHA 181

Query: 140 ARQGHVDVVKALLSK---DPQLARRTDKKGQTALHMAVKGQSCEVVKLLLE 187
             +GH D    L+ K   +       D KG  A  +A+     +V K  L 
Sbjct: 182 LAEGHGDAAVLLVEKYGAEYD---LVDNKGAKAEDVALNE---QVKKFFLN 226

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  170 bits (433), Expect = 4e-50
 Identities = 57/223 (25%), Positives = 102/223 (45%), Gaps = 10/223 (4%)

Query: 22  VNEVNELGETALFTAADKGHIEVVNELLKYSTKEG--LTRKNRSGFDPLHIAAVQGHHAI 79
           +  +++     +  A   G  E   EL++     G  + + ++     LH AA+     +
Sbjct: 2   MTHIDDYSTWDIVKATQYGIYERCRELVEA----GYDVRQPDKENVTLLHWAAINNRIDL 57

Query: 80  VQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFA 139
           V+  +     + Q  G  N+TPL  A  +GH ++V +L+   G    +    G + +H A
Sbjct: 58  VKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKY-GADPSLIDGEGCSCIHLA 116

Query: 140 ARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAV-KGQSCEVVKLLLEADAAIVMLPDK 198
           A+ GH  +V  L++K   +    D+ G T L  A  +  S +  +LLL  + ++ +    
Sbjct: 117 AQFGHTSIVAYLIAKGQDV-DMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKY 175

Query: 199 FGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 241
             NTALH A     T +++ LL     NV+A     ++ALD+A
Sbjct: 176 HKNTALHWAVLAGNTTVISLLLEA-GANVDAQNIKGESALDLA 217

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  154 bits (391), Expect = 6e-44
 Identities = 59/204 (28%), Positives = 96/204 (47%), Gaps = 11/204 (5%)

Query: 22  VNEVNELGETALFTAADKGHIEVVNELLKY-STKEGLTRKNRSGFDPLHIAAVQGHHAIV 80
           V + ++   T L  AA    I++V   +   +  +           PLH A  QGH ++V
Sbjct: 35  VRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVD--QLGGDLNSTPLHWATRQGHLSMV 92

Query: 81  QVLLDH--DPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHF 138
             L+ +  DPSL    G    + +  AA  GHT++V  L++K G  +++   NG   L +
Sbjct: 93  VQLMKYGADPSLIDGEG---CSCIHLAAQFGHTSIVAYLIAK-GQDVDMMDQNGMTPLMW 148

Query: 139 AARQGH-VDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPD 197
           AA + H VD  + LL+ +  +         TALH AV   +  V+ LLLEA A +    +
Sbjct: 149 AAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDA-QN 207

Query: 198 KFGNTALHVATRKKRTEIVTELLS 221
             G +AL +A ++K   ++  L  
Sbjct: 208 IKGESALDLAKQRKNVWMINHLQE 231

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  127 bits (322), Expect = 4e-34
 Identities = 47/175 (26%), Positives = 85/175 (48%), Gaps = 10/175 (5%)

Query: 22  VNEV-NELGETALFTAADKGHIEVVNELLKYSTKEG--LTRKNRSGFDPLHIAAVQGHHA 78
           V+++  +L  T L  A  +GH+ +V +L+KY    G   +  +  G   +H+AA  GH +
Sbjct: 68  VDQLGGDLNSTPLHWATRQGHLSMVVQLMKY----GADPSLIDGEGCSCIHLAAQFGHTS 123

Query: 79  IVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTA-VVNELLSKDGGLLEISRSNGKNALH 137
           IV  L+     +      +  TPL+ AA R H+      LL+ +  +    + +   ALH
Sbjct: 124 IVAYLIAKGQDVDMMDQ-NGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALH 182

Query: 138 FAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAI 192
           +A   G+  V+  LL     +  + + KG++AL +A + ++  ++  L EA  A 
Sbjct: 183 WAVLAGNTTVISLLLEAGANVDAQ-NIKGESALDLAKQRKNVWMINHLQEARQAK 236

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  171 bits (437), Expect = 2e-48
 Identities = 58/227 (25%), Positives = 97/227 (42%), Gaps = 8/227 (3%)

Query: 22  VNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQ 81
            +     G T L  AA +  +EV   LL+Y        ++  G  PLH+AA +GH  +V 
Sbjct: 205 PHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGS--ANAESVQGVTPLHLAAQEGHAEMVA 262

Query: 82  VLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAAR 141
           +LL    + +     S  TPL   A  GH  V + L+   G +++ +   G   LH A+ 
Sbjct: 263 LLLSKQANGNLGNK-SGLTPLHLVAQEGHVPVADVLIKH-GVMVDATTRMGYTPLHVASH 320

Query: 142 QGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGN 201
            G++ +VK LL     +  +  K G + LH A +    ++V LLL+  A+        G 
Sbjct: 321 YGNIKLVKFLLQHQADVNAK-TKLGYSPLHQAAQQGHTDIVTLLLKNGASP-NEVSSDGT 378

Query: 202 TALHVATRKKRTEIVTELLSLPD--TNVNALTRDHKTALDIAEGLPS 246
           T L +A R     +   L  + D  + V    +   +  +  + +  
Sbjct: 379 TPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMSFPETVDEILD 425

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  167 bits (426), Expect = 5e-47
 Identities = 77/222 (34%), Positives = 102/222 (45%), Gaps = 11/222 (4%)

Query: 22  VNEVNELGETALFTAADKGHIEVVNELLKYSTKEG--LTRKNRSGFDPLHIAAVQGHHAI 79
                E G T L  A+  GH+ +V  LL+     G      N     PLH+AA  GH  +
Sbjct: 7   GGGGGESGLTPLHVASFMGHLPIVKNLLQR----GASPNVSNVKVETPLHMAARAGHTEV 62

Query: 80  VQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFA 139
            + LL +   ++      + TPL  AA  GHT +V  LL        ++ + G   LH A
Sbjct: 63  AKYLLQNKAKVNAKAK-DDQTPLHCAARIGHTNMVKLLLEN-NANPNLATTAGHTPLHIA 120

Query: 140 ARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKF 199
           AR+GHV+ V ALL K+   A    KKG T LH+A K     V +LLLE DA       K 
Sbjct: 121 AREGHVETVLALLEKEASQACM-TKKGFTPLHVAAKYGKVRVAELLLERDAHP-NAAGKN 178

Query: 200 GNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 241
           G T LHVA      +IV  LL     + ++   +  T L IA
Sbjct: 179 GLTPLHVAVHHNNLDIVKLLLPR-GGSPHSPAWNGYTPLHIA 219

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  163 bits (416), Expect = 1e-47
 Identities = 57/246 (23%), Positives = 96/246 (39%), Gaps = 12/246 (4%)

Query: 22  VNEVNELGETALFTAADKGHIEVVNELLKYSTKEG--LTRKNRSGFDPLHIAAVQGHHAI 79
               +E G+T L  A  +G++  V+ L+    + G  L   N     PLH+A +    ++
Sbjct: 2   ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSV 61

Query: 80  VQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSK---DGGLLEISRSNGKNAL 136
           V++L+    S          T    A        +  LL         LE    +G  AL
Sbjct: 62  VRLLVTAGASPMALDR-HGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTAL 120

Query: 137 HFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLP 196
           H A      + V+ LL +   +     K G++ L  AV+  S  +V+LLL+  A +    
Sbjct: 121 HVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNA-Q 179

Query: 197 DKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDC 256
              G++ALH A+ +    +V  L+     + +     + T L +A     S    +I   
Sbjct: 180 MYSGSSALHSASGRGLLPLVRTLVRS-GADSSLKNCHNDTPLMVA----RSRRVIDILRG 234

Query: 257 LARCGA 262
            A   A
Sbjct: 235 KATRPA 240

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 69.4 bits (171), Expect = 1e-13
 Identities = 26/115 (22%), Positives = 43/115 (37%), Gaps = 8/115 (6%)

Query: 158 LARRTDKKGQTALHMAVKGQSCEVVKLLLEADA---AIVMLPDKFGNTALHVATRKKRTE 214
           +A R D+ G T LH+AV   +   V  L+         + + +    T LH+A       
Sbjct: 1   MATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPS 60

Query: 215 IVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVRANELN 269
           +V  L++    +  AL R  +TA  +A        +      L    A    +L 
Sbjct: 61  VVRLLVTA-GASPMALDRHGQTAAHLA----CEHRSPTCLRALLDSAAPGTLDLE 110

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  164 bits (417), Expect = 2e-47
 Identities = 52/248 (20%), Positives = 81/248 (32%), Gaps = 22/248 (8%)

Query: 12  TEVAEI------RSSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGF 65
               +           ++  N+LG+TAL  AA  G    V +L        +    R G 
Sbjct: 22  EPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAG--VLVAERGGH 79

Query: 66  DPLHIAAVQGHHAIVQVLLDHDPSLSQ------------TTGPSNATPLVSAATRGHTAV 113
             LH+A     H    VLL   PS  +             T  ++  P    +       
Sbjct: 80  TALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENE 139

Query: 114 VNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMA 173
                      LE    +G   LH A      ++V+ L      L +     G+T LH+A
Sbjct: 140 EEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLA 199

Query: 174 VKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRD 233
           V+ Q+  V++LLL+A A         G T L  A  +    +   L +           D
Sbjct: 200 VEAQAASVLELLLKAGADP-TARMYGGRTPLGSALLRPNPILARLLRAH-GAPEPEDGGD 257

Query: 234 HKTALDIA 241
             +    +
Sbjct: 258 KLSPCSSS 265

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  148 bits (375), Expect = 3e-41
 Identities = 57/237 (24%), Positives = 85/237 (35%), Gaps = 21/237 (8%)

Query: 21  VVNEVNELGETALFTAADKGHIEVVNELLKYS-TKEGLTRKNRSGFDPLHIAAVQGHHAI 79
           V   V E G+TAL  A    H   ++ LL +S   E L  +N  G   LH+AA+ G  + 
Sbjct: 1   VFGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEAST 60

Query: 80  VQVLLDH--DPSLSQTTGPSNATPLVSAATRGHTAVVNELLSK---------DGGLLEIS 128
           V+ L        +++  G    T L  A           LL           D  L +  
Sbjct: 61  VEKLYAAGAGVLVAERGG---HTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQ 117

Query: 129 RSNGKN----ALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKL 184
                     A   +      +          QL    +  G T LH+AV  +  E+V+L
Sbjct: 118 DCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAE-NYDGHTPLHVAVIHKDAEMVRL 176

Query: 185 LLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 241
           L +A A +       G T LH+A   +   ++  LL     +  A     +T L  A
Sbjct: 177 LRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKA-GADPTARMYGGRTPLGSA 232

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  139 bits (354), Expect = 3e-38
 Identities = 34/212 (16%), Positives = 54/212 (25%), Gaps = 15/212 (7%)

Query: 22  VNEVNELGETALFTAADKGHIEVVNELLKY-----------STKEGLTRKNRSGFDPLHI 70
           V      G TAL  A           LL+               +       +   P  +
Sbjct: 71  VLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAV 130

Query: 71  AAVQGHHA-IVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISR 129
            +             D    L         TPL  A       +V  L      L +   
Sbjct: 131 DSQPNPENEEEPRDEDWRLQLEAENY-DGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEP 189

Query: 130 SNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEAD 189
           + G+  LH A       V++ LL        R    G+T L  A+   +  + +LL    
Sbjct: 190 TCGRTPLHLAVEAQAASVLELLLKAGADPTAR-MYGGRTPLGSALLRPNPILARLLRAHG 248

Query: 190 AAIVMLPDKFGNTALHVATRKKRTEIVTELLS 221
           A           +    +     ++   E   
Sbjct: 249 APE-PEDGGDKLSPCSSSGSDSDSDNRDEGDE 279

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  116 bits (293), Expect = 1e-29
 Identities = 25/184 (13%), Positives = 52/184 (28%), Gaps = 4/184 (2%)

Query: 7   GAEFDTEVAEIRSSVVNEVNE-LGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGF 65
                 + ++   +   +             +            +   +  L  +N  G 
Sbjct: 101 RPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDE-DWRLQLEAENYDGH 159

Query: 66  DPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLL 125
            PLH+A +     +V++L D    L++       TPL  A      +V+  LL   G   
Sbjct: 160 TPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKA-GADP 218

Query: 126 EISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLL 185
                 G+  L  A  + +  + + L +              +    +      +     
Sbjct: 219 TARMYGGRTPLGSALLRPNPILARLLRAHGAPEPED-GGDKLSPCSSSGSDSDSDNRDEG 277

Query: 186 LEAD 189
            E D
Sbjct: 278 DEYD 281

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  160 bits (407), Expect = 2e-46
 Identities = 57/220 (25%), Positives = 96/220 (43%), Gaps = 6/220 (2%)

Query: 22  VNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQ 81
               ++   + L  AA+ GH+++ + L++      +   +     PL  AA   H   V+
Sbjct: 4   FKMEHQNKRSPLHAAAEAGHVDICHMLVQAGAN--IDTCSEDQRTPLMEAAENNHLEAVK 61

Query: 82  VLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAAR 141
            L+     +        +T L  AA +GH  VV  LLS     +      G   + +A  
Sbjct: 62  YLIKAGALVDPKDA-EGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATE 120

Query: 142 QGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGN 201
             HVD+VK LLSK   +  R D +    LH A      ++ ++LL A   +    +  G+
Sbjct: 121 YKHVDLVKLLLSKGSDINIR-DNEENICLHWAAFSGCVDIAEILLAAKCDLHA-VNIHGD 178

Query: 202 TALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 241
           + LH+A R+ R + V   LS  D++V    ++ +T L  A
Sbjct: 179 SPLHIAARENRYDCVVLFLSR-DSDVTLKNKEGETPLQCA 217

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  152 bits (388), Expect = 1e-43
 Identities = 57/208 (27%), Positives = 93/208 (44%), Gaps = 21/208 (10%)

Query: 22  VNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQ 81
           ++  +E   T L  AA+  H+E V  L+K      +  K+  G   LH+AA +GH+ +VQ
Sbjct: 37  IDTCSEDQRTPLMEAAENNHLEAVKYLIKAGAL--VDPKDAEGSTCLHLAAKKGHYEVVQ 94

Query: 82  VLLDHDPSLSQTTGPSN--------ATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGK 133
            LL +        G  +         TP++ A    H  +V  LLSK G  + I  +   
Sbjct: 95  YLLSN--------GQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSK-GSDINIRDNEEN 145

Query: 134 NALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIV 193
             LH+AA  G VD+ + LL+    L    +  G + LH+A +    + V L L  D+ + 
Sbjct: 146 ICLHWAAFSGCVDIAEILLAAKCDLHAV-NIHGDSPLHIAARENRYDCVVLFLSRDSDVT 204

Query: 194 MLPDKFGNTALHVATRKKRTEIVTELLS 221
           +  +K G T L  A+   +     ++  
Sbjct: 205 L-KNKEGETPLQCASLNSQVWSALQMSK 231

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  127 bits (322), Expect = 4e-34
 Identities = 46/172 (26%), Positives = 73/172 (42%), Gaps = 6/172 (3%)

Query: 22  VNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQ 81
           V+  +  G T L  AA KGH EVV  LL     + +  ++  G+ P+  A    H  +V+
Sbjct: 70  VDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMD-VNCQDDGGWTPMIWATEYKHVDLVK 128

Query: 82  VLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAAR 141
           +LL     ++          L  AA  G   +   LL+     L     +G + LH AAR
Sbjct: 129 LLLSKGSDINIRDN-EENICLHWAAFSGCVDIAEILLAA-KCDLHAVNIHGDSPLHIAAR 186

Query: 142 QGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLE--ADAA 191
           +   D V   LS+D  +  + +K+G+T L  A           + +   D+A
Sbjct: 187 ENRYDCVVLFLSRDSDVTLK-NKEGETPLQCASLNSQVWSALQMSKALQDSA 237

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  160 bits (408), Expect = 6e-46
 Identities = 62/250 (24%), Positives = 106/250 (42%), Gaps = 30/250 (12%)

Query: 29  GETALFTAADKGHIEVVNELLKY------STKEGLTRKNRSGFDPLHIAAVQGHHAIVQV 82
             + +  AA  GH   +  L+         T + ++        PLH A + GH + V++
Sbjct: 59  DWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVS--------PLHEACLGGHLSCVKI 110

Query: 83  LLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQ 142
           LL H   ++  T     TPL +A   G    VN LL   G  ++   S+  + +H AAR+
Sbjct: 111 LLKHGAQVNGVTA-DWHTPLFNACVSGSWDCVNLLLQH-GASVQ-PESDLASPIHEAARR 167

Query: 143 GHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNT 202
           GHV+ V +L++    +  +      T L++A + Q    VK LLE+ A +     K  ++
Sbjct: 168 GHVECVNSLIAYGGNIDHK-ISHLGTPLYLACENQQRACVKKLLESGADVNQ--GKGQDS 224

Query: 203 ALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGA 262
            LH   R    E+   L+     +  A   + K  +++        E+   +  L R GA
Sbjct: 225 PLHAVVRTASEELACLLMDF-GADTQAKNAEGKRPVELV-----PPESPLAQLFLEREGA 278

Query: 263 VRANELNQPR 272
                L +P+
Sbjct: 279 ----SLPKPK 284

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  144 bits (367), Expect = 5e-40
 Identities = 46/229 (20%), Positives = 78/229 (34%), Gaps = 20/229 (8%)

Query: 15  AEIRSSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQ 74
           + + S    +    G          G   + N          L     S + P+H AA+ 
Sbjct: 19  SHMASMDGKQGGMDGSKPAGPRDFPGIRLLSN---------PLMGDAVSDWSPMHEAAIH 69

Query: 75  GHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKN 134
           GH   ++ L+    +++  T   + +PL  A   GH + V  LL   G  +    ++   
Sbjct: 70  GHQLSLRNLISQGWAVNIITA-DHVSPLHEACLGGHLSCVKILLKH-GAQVNGVTADWHT 127

Query: 135 ALHFAARQGHVDVVKALLSK--DPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAI 192
            L  A   G  D V  LL      Q     +    + +H A +    E V  L+     I
Sbjct: 128 PLFNACVSGSWDCVNLLLQHGASVQ----PESDLASPIHEAARRGHVECVNSLIAYGGNI 183

Query: 193 VMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 241
                    T L++A   ++   V +LL     +VN   +   + L   
Sbjct: 184 DH-KISHLGTPLYLACENQQRACVKKLLES-GADVNQ-GKGQDSPLHAV 229

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  134 bits (339), Expect = 4e-36
 Identities = 47/209 (22%), Positives = 78/209 (37%), Gaps = 16/209 (7%)

Query: 36  AADKGHIEVVNELLKYS---TKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQ 92
            +   H    + L+            +    G  P       G        L  +P +  
Sbjct: 2   GSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGI------RLLSNPLMGD 55

Query: 93  TTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALL 152
               S+ +P+  AA  GH   +  L+S+ G  + I  ++  + LH A   GH+  VK LL
Sbjct: 56  AV--SDWSPMHEAAIHGHQLSLRNLISQ-GWAVNIITADHVSPLHEACLGGHLSCVKILL 112

Query: 153 SKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKR 212
               Q+         T L  A    S + V LLL+  A++   P+    + +H A R+  
Sbjct: 113 KHGAQVNGV-TADWHTPLFNACVSGSWDCVNLLLQHGASV--QPESDLASPIHEAARRGH 169

Query: 213 TEIVTELLSLPDTNVNALTRDHKTALDIA 241
            E V  L++    N++       T L +A
Sbjct: 170 VECVNSLIAY-GGNIDHKISHLGTPLYLA 197

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  112 bits (283), Expect = 3e-28
 Identities = 33/178 (18%), Positives = 56/178 (31%), Gaps = 20/178 (11%)

Query: 70  IAAVQGHHAIVQVLLDH----DPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLL 125
           + +   HH     L+           +  G   + P       G   + N L+       
Sbjct: 1   MGSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDA---- 56

Query: 126 EISRSNGKNALHFAARQGHVDVVKALLSK--DPQLARRTDKKGQTALHMAVKGQSCEVVK 183
                +  + +H AA  GH   ++ L+S+               + LH A  G     VK
Sbjct: 57  ----VSDWSPMHEAAIHGHQLSLRNLISQGWAVN---IITADHVSPLHEACLGGHLSCVK 109

Query: 184 LLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 241
           +LL+  A +        +T L  A      + V  LL     +V     D  + +  A
Sbjct: 110 ILLKHGAQV-NGVTADWHTPLFNACVSGSWDCVNLLLQH-GASVQP-ESDLASPIHEA 164

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  159 bits (406), Expect = 7e-45
 Identities = 51/225 (22%), Positives = 82/225 (36%), Gaps = 26/225 (11%)

Query: 22  VNEVNELGETALFTAADKGHIEVVNELLKYSTKEG--LTRKNRSGFDPLHIAAVQGHHAI 79
           VN ++    T L  AA K  +EV + LL +    G   T  N  G   + +A        
Sbjct: 117 VNAMDLWQFTPLHEAASKNRVEVCSLLLSH----GADPTLVNCHGKSAVDMAPTPELRER 172

Query: 80  VQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFA 139
           +         L              AA     A V + L+    +      + + ALH A
Sbjct: 173 LTYEFKGHSLLQ-------------AAREADLAKVKKTLAL-EIINFKQPQSHETALHCA 218

Query: 140 ARQGH---VDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLP 196
               H     V + LL K   +    +K   T LH+A +    +V+++L +  A +    
Sbjct: 219 VASLHPKRKQVAELLLRKGANV-NEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKM-NAL 276

Query: 197 DKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 241
           D  G TALH A      +    LLS   ++ + ++    TA  + 
Sbjct: 277 DSLGQTALHRAALAGHLQTCRLLLSY-GSDPSIISLQGFTAAQMG 320

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  146 bits (372), Expect = 5e-40
 Identities = 58/225 (25%), Positives = 92/225 (40%), Gaps = 26/225 (11%)

Query: 22  VNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQ 81
           V+  ++ G   L  A   GH EV   LLK+     +   +   F PLH AA +    +  
Sbjct: 84  VHAKDKGGLVPLHNACSYGHYEVTELLLKHGAC--VNAMDLWQFTPLHEAASKNRVEVCS 141

Query: 82  VLLDH--DPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFA 139
           +LL H  DP+L    G    + +  A T      +                   ++L  A
Sbjct: 142 LLLSHGADPTLVNCHG---KSAVDMAPTPELRERLTYEFK-------------GHSLLQA 185

Query: 140 ARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVK---GQSCEVVKLLLEADAAIVMLP 196
           AR+  +  VK  L+ +    ++  +  +TALH AV     +  +V +LLL   A +    
Sbjct: 186 AREADLAKVKKTLALEIINFKQ-PQSHETALHCAVASLHPKRKQVAELLLRKGANV-NEK 243

Query: 197 DKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 241
           +K   T LHVA  +   +++  L       +NAL    +TAL  A
Sbjct: 244 NKDFMTPLHVAAERAHNDVMEVLHKH-GAKMNALDSLGQTALHRA 287

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  141 bits (359), Expect = 3e-38
 Identities = 63/247 (25%), Positives = 88/247 (35%), Gaps = 36/247 (14%)

Query: 22  VNEVNELGETALFTAADKGHIEVVNELLKYSTKEG--LTRKNRSGFDPLHIAAVQGHHAI 79
                E  +  L  AA  G+ E +  LL   T         +     PLH+AA      I
Sbjct: 17  AVLTGEYKKDELLEAARSGNEEKLMALL---TPLNVNCHASDGRKSTPLHLAAGYNRVRI 73

Query: 80  VQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFA 139
           VQ+LL H   +          PL +A + GH  V   LL   G  +          LH A
Sbjct: 74  VQLLLQHGADVHAKDK-GGLVPLHNACSYGHYEVTELLLKH-GACVNAMDLWQFTPLHEA 131

Query: 140 ARQGHVDVVKALLSK--DPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADA------- 190
           A +  V+V   LLS   DP L    +  G++A+ MA   +  E +    +  +       
Sbjct: 132 ASKNRVEVCSLLLSHGADPTLV---NCHGKSAVDMAPTPELRERLTYEFKGHSLLQAARE 188

Query: 191 -------------AIVMLPDKFGNTALHVATRK---KRTEIVTELLSLPDTNVNALTRDH 234
                         I     +   TALH A      KR ++   LL     NVN   +D 
Sbjct: 189 ADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRK-GANVNEKNKDF 247

Query: 235 KTALDIA 241
            T L +A
Sbjct: 248 MTPLHVA 254

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  119 bits (302), Expect = 3e-30
 Identities = 47/211 (22%), Positives = 75/211 (35%), Gaps = 33/211 (15%)

Query: 22  VNEVNELGETALFTAADKGHIEVVNELLKYST-------------KEGLTR------KNR 62
              VN  G++A+  A      E +    K  +             K+ L        + +
Sbjct: 150 PTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQ 209

Query: 63  SGFDPLHIAAVQGHHA---IVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLS 119
           S    LH A    H     + ++LL    ++++       TPL  AA R H  V+  L  
Sbjct: 210 SHETALHCAVASLHPKRKQVAELLLRKGANVNEKNK-DFMTPLHVAAERAHNDVMEVLHK 268

Query: 120 KDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSC 179
             G  +    S G+ ALH AA  GH+   + LLS     +     +G TA  M       
Sbjct: 269 H-GAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSII-SLQGFTAAQMGN----- 321

Query: 180 EVVKLLLEADAAIVMLPDKFGNTALHVATRK 210
           E V+ +L     +        +  L  A++ 
Sbjct: 322 EAVQQILSESTPMR---TSDVDYRLLEASKA 349

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 92.9 bits (232), Expect = 6e-21
 Identities = 35/134 (26%), Positives = 55/134 (41%), Gaps = 7/134 (5%)

Query: 109 GHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVD-VVKALLSKDPQLARRTDKKGQ 167
           G +A+  +L         ++    K+ L  AAR G+ + ++  L   +      +D +  
Sbjct: 4   GKSAL--DLADP-SAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNC-HASDGRKS 59

Query: 168 TALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNV 227
           T LH+A       +V+LLL+  A +    DK G   LH A      E+   LL      V
Sbjct: 60  TPLHLAAGYNRVRIVQLLLQHGADV-HAKDKGGLVPLHNACSYGHYEVTELLLKH-GACV 117

Query: 228 NALTRDHKTALDIA 241
           NA+     T L  A
Sbjct: 118 NAMDLWQFTPLHEA 131

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 53.3 bits (129), Expect = 8e-08
 Identities = 22/90 (24%), Positives = 37/90 (41%), Gaps = 14/90 (15%)

Query: 22  VNEVNELGETALFTAADKGHIEVVNELLKYSTKEG--LTRKNRSGFDPLHIAAVQGHHAI 79
           +N ++ LG+TAL  AA  GH++    LL Y    G   +  +  GF    +      +  
Sbjct: 273 MNALDSLGQTALHRAALAGHLQTCRLLLSY----GSDPSIISLQGFTAAQMG-----NEA 323

Query: 80  VQVLLDHDPSLSQTTGPSNATPLVSAATRG 109
           VQ +L     +  +        L+ A+  G
Sbjct: 324 VQQILSESTPMRTSD---VDYRLLEASKAG 350

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 46.3 bits (111), Expect = 1e-05
 Identities = 16/66 (24%), Positives = 26/66 (39%), Gaps = 1/66 (1%)

Query: 176 GQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHK 235
           G+  +    L +  A  V L  ++    L  A R    E +  LL+  + N +A      
Sbjct: 1   GEFGKSALDLADPSAKAV-LTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKS 59

Query: 236 TALDIA 241
           T L +A
Sbjct: 60  TPLHLA 65

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  156 bits (396), Expect = 9e-45
 Identities = 54/227 (23%), Positives = 94/227 (41%), Gaps = 14/227 (6%)

Query: 24  EVNELGETALFTAADKGHIEVVNELLKYSTKEG--LTRKNRSGFDPLHIAAVQGHHAIVQ 81
           ++ E G++ L  A       +  E+++    +   L  +N     PLH+A +     I +
Sbjct: 3   QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAE 62

Query: 82  VLLDH--DPSLSQTTGPSNATPLVSAATRGHTAVVNELLSK-----DGGLLEISRSNGKN 134
            LL    DP L    G    TPL  A  +G  A V  L           +L+ +  NG  
Sbjct: 63  ALLGAGCDPELRDFRG---NTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHT 119

Query: 135 ALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVM 194
            LH A+  G++ +V+ L+S    +  +    G+TALH+AV  Q+ ++V LLL+  A +  
Sbjct: 120 CLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNR 179

Query: 195 LPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 241
           +    G +   +   +  T I  +L  L       +  + +      
Sbjct: 180 V-TYQGYSPYQLTWGRPSTRIQQQLGQL-TLENLQMLPESEDEESYD 224

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 79.9 bits (198), Expect = 4e-17
 Identities = 23/151 (15%), Positives = 50/151 (33%), Gaps = 20/151 (13%)

Query: 11  DTEVAEI---------RSSVVNEVNELGETALFTAADKGHIEVVNELLKY----STKEGL 57
                 +           S++   N  G T L  A+  G++ +V  L+      + +E  
Sbjct: 90  CLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQE-- 147

Query: 58  TRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNEL 117
                +G   LH+A    +  +V +LL     +++ T     +P      R  T +  +L
Sbjct: 148 ---PCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTY-QGYSPYQLTWGRPSTRIQQQL 203

Query: 118 LSKDGGLLEISRSNGKNALHFAARQGHVDVV 148
                  L++     ++   +       +  
Sbjct: 204 GQLTLENLQMLP-ESEDEESYDTESEFTEFT 233

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  157 bits (399), Expect = 1e-44
 Identities = 64/239 (26%), Positives = 95/239 (39%), Gaps = 28/239 (11%)

Query: 22  VNEV-NELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIV 80
           VN    E G T L  A      ++V  LL++        + ++G  P  +AA+ G   ++
Sbjct: 31  VNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD--PVLRKKNGATPFLLAAIAGSVKLL 88

Query: 81  QVLLDH--DPSLSQTTGPSNATPLVSAATRGHTAVVNELLS---------KDGGLLEISR 129
           ++ L    D +     G    T  + AA  G    +  L           K     E  R
Sbjct: 89  KLFLSKGADVNECDFYG---FTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLR 145

Query: 130 SNGKNALHFAARQGHVDVVKALLSK---DPQLARRTDKKGQTALHMAV----KGQSCEVV 182
             G  AL  AA +GHV+V+K LL +   D       D  G+ AL  A+          + 
Sbjct: 146 KGGATALMDAAEKGHVEVLKILLDEMGADVNAC---DNMGRNALIHALLSSDDSDVEAIT 202

Query: 183 KLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 241
            LLL+  A +  +  + G T L +A  KK   +V  LL      +N    D KTAL +A
Sbjct: 203 HLLLDHGADV-NVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLA 260

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  155 bits (394), Expect = 6e-44
 Identities = 51/215 (23%), Positives = 82/215 (38%), Gaps = 20/215 (9%)

Query: 22  VNEVNELGETALFTAADKGHIEVVNELLKYSTKEG--LTRKNRSGFDPLHIAAVQGHHAI 79
                + G T    AA  G ++++   L      G  +   +  GF     AAV G    
Sbjct: 65  PVLRKKNGATPFLLAAIAGSVKLLKLFLSK----GADVNECDFYGFTAFMEAAVYGKVKA 120

Query: 80  VQVLLDH---------DPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRS 130
           ++ L                 +      AT L+ AA +GH  V+  LL + G  +    +
Sbjct: 121 LKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDN 180

Query: 131 NGKNALHFAARQGHVD----VVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLL 186
            G+NAL  A           +   LL     +  R  ++G+T L +AV+ +   +V+ LL
Sbjct: 181 MGRNALIHALLSSDDSDVEAITHLLLDHGADVNVR-GERGKTPLILAVEKKHLGLVQRLL 239

Query: 187 EADAAIVMLPDKFGNTALHVATRKKRTEIVTELLS 221
           E +   +   D  G TAL +A   K  +I   L  
Sbjct: 240 EQEHIEINDTDSDGKTALLLAVELKLKKIAELLCK 274

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  146 bits (372), Expect = 8e-41
 Identities = 68/230 (29%), Positives = 92/230 (40%), Gaps = 25/230 (10%)

Query: 29  GETALFTAADKGHIEVVNELLKYSTKEGL---TRKNRSGFDPLHIAAVQGHHAIVQVLLD 85
               L  A     +++V +LL+     G     ++   G+ PLH A       IV++LL 
Sbjct: 5   DNHLLIKAVQNEDVDLVQQLLEG----GANVNFQEEEGGWTPLHNAVQMSREDIVELLLR 60

Query: 86  H--DPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQG 143
           H  DP L +  G   ATP + AA  G   ++   LSK G  +      G  A   AA  G
Sbjct: 61  HGADPVLRKKNG---ATPFLLAAIAGSVKLLKLFLSK-GADVNECDFYGFTAFMEAAVYG 116

Query: 144 HVDVVKALLS---------KDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVM 194
            V  +K L           K  +   R  K G TAL  A +    EV+K+LL+   A V 
Sbjct: 117 KVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVN 176

Query: 195 LPDKFGNTALHVATR---KKRTEIVTELLSLPDTNVNALTRDHKTALDIA 241
             D  G  AL  A         E +T LL     +VN      KT L +A
Sbjct: 177 ACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILA 226

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  138 bits (350), Expect = 1e-37
 Identities = 52/205 (25%), Positives = 73/205 (35%), Gaps = 11/205 (5%)

Query: 67  PLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLE 126
            L  A       +VQ LL+   +++        TPL +A       +V  LL   G    
Sbjct: 8   LLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH-GADPV 66

Query: 127 ISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLL 186
           + + NG      AA  G V ++K  LSK   +    D  G TA   A      + +K L 
Sbjct: 67  LRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNEC-DFYGFTAFMEAAVYGKVKALKFLY 125

Query: 187 EADAAI---------VMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTA 237
           +  A +              K G TAL  A  K   E++  LL     +VNA     + A
Sbjct: 126 KRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNA 185

Query: 238 LDIAEGLPSSEEASEIKDCLARCGA 262
           L  A       +   I   L   GA
Sbjct: 186 LIHALLSSDDSDVEAITHLLLDHGA 210

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  126 bits (318), Expect = 4e-33
 Identities = 50/186 (26%), Positives = 82/186 (44%), Gaps = 19/186 (10%)

Query: 22  VNEVNELGETALFTAADKGHIEVVNELL--------KYSTKEGLTRKNRSGFDPLHIAAV 73
           VNE +  G TA   AA  G ++ +  L         +  TKE   R  + G   L  AA 
Sbjct: 98  VNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAE 157

Query: 74  QGHHAIVQVLLDH---DPSLSQTTGPSNATPLVSAATRGHT----AVVNELLSKDGGLLE 126
           +GH  ++++LLD    D +     G      L+ A          A+ + LL   G  + 
Sbjct: 158 KGHVEVLKILLDEMGADVNACDNMG---RNALIHALLSSDDSDVEAITHLLLDH-GADVN 213

Query: 127 ISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLL 186
           +    GK  L  A  + H+ +V+ LL ++      TD  G+TAL +AV+ +  ++ +LL 
Sbjct: 214 VRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLC 273

Query: 187 EADAAI 192
           +  A+ 
Sbjct: 274 KRGAST 279

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 96.8 bits (242), Expect = 1e-22
 Identities = 30/111 (27%), Positives = 48/111 (43%), Gaps = 2/111 (1%)

Query: 131 NGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADA 190
              + L  A +   VD+V+ LL     +  + ++ G T LH AV+    ++V+LLL   A
Sbjct: 4   EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGA 63

Query: 191 AIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 241
             V+   K G T   +A      +++   LS    +VN       TA   A
Sbjct: 64  DPVL-RKKNGATPFLLAAIAGSVKLLKLFLSK-GADVNECDFYGFTAFMEA 112

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  156 bits (397), Expect = 3e-44
 Identities = 57/253 (22%), Positives = 103/253 (40%), Gaps = 22/253 (8%)

Query: 22  VNEVNELGETALFTAADKGHIEVVNELLKYSTKEG--LTRKNRSGFDPLHIAAVQGHHAI 79
           +N  N  G TAL  A    ++++V  L++     G  + + +  G+ PLH AA  G+  I
Sbjct: 66  INYANVDGLTALHQACIDDNVDMVKFLVEN----GANINQPDNEGWIPLHAAASCGYLDI 121

Query: 80  VQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFA 139
            + L+     +         TPL  A       ++   +++ G        + + A    
Sbjct: 122 AEYLISQGAHVGAVNS-EGDTPLDIAEEEAMEELLQNEVNRQG-------VDIEAARKEE 173

Query: 140 ARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKF 199
            R    D  + L S      R   K G TALH+A      EV+KLL++A   +  + D  
Sbjct: 174 ERIMLRDARQWLNSGHINDVRH-AKSGGTALHVAAAKGYTEVLKLLIQARYDV-NIKDYD 231

Query: 200 GNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLAR 259
           G T LH A    + E    +L     ++ A+ +  +TA D+A      +    +++   +
Sbjct: 232 GWTPLHAAAHWGKEEAC-RILVENLCDMEAVNKVGQTAFDVA----DEDILGYLEELQKK 286

Query: 260 CGAVRANELNQPR 272
              +  +E  + +
Sbjct: 287 QNLLH-SEKREKK 298

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  142 bits (360), Expect = 6e-39
 Identities = 46/217 (21%), Positives = 79/217 (36%), Gaps = 18/217 (8%)

Query: 22  VNEVNELGETALFTAADKGHIEVVNELLKYSTKEG--LTRKNRSGFDPLHIAAVQGHHAI 79
           +N+ +  G   L  AA  G++++   L+      G  +   N  G  PL IA  +    +
Sbjct: 99  INQPDNEGWIPLHAAASCGYLDIAEYLISQ----GAHVGAVNSEGDTPLDIAEEEAMEEL 154

Query: 80  VQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFA 139
           +Q  ++         G                    + L+           +G  ALH A
Sbjct: 155 LQNEVNRQ-------GVDIEAARKEEERIMLRDAR-QWLNSGHINDVRHAKSGGTALHVA 206

Query: 140 ARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKF 199
           A +G+ +V+K L+     +    D  G T LH A      E  ++L+E    +    +K 
Sbjct: 207 AAKGYTEVLKLLIQARYDV-NIKDYDGWTPLHAAAHWGKEEACRILVENLCDM-EAVNKV 264

Query: 200 GNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKT 236
           G TA  VA       +  EL    +   +   R+ K+
Sbjct: 265 GQTAFDVADEDILGYLE-ELQKKQNLLHSE-KREKKS 299

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  122 bits (310), Expect = 8e-32
 Identities = 34/189 (17%), Positives = 72/189 (38%), Gaps = 11/189 (5%)

Query: 60  KNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLS 119
            +        +    G    ++  +             +    ++A + G T  V  LL 
Sbjct: 4   ADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKF--DDGAVFLAACSSGDTEEVLRLLE 61

Query: 120 KDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSC 179
           + G  +  +  +G  ALH A    +VD+VK L+     + +  D +G   LH A      
Sbjct: 62  R-GADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQP-DNEGWIPLHAAASCGYL 119

Query: 180 EVVKLLLE--ADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTA 237
           ++ + L+   A    V   +  G+T L +A  +   E++   ++    ++ A  ++ +  
Sbjct: 120 DIAEYLISQGAHVGAV---NSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERI 176

Query: 238 L--DIAEGL 244
           +  D  + L
Sbjct: 177 MLRDARQWL 185

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  119 bits (300), Expect = 2e-30
 Identities = 39/215 (18%), Positives = 70/215 (32%), Gaps = 18/215 (8%)

Query: 29  GETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDH-- 86
            +         G    +   +    K     K   G      A   G    V  LL+   
Sbjct: 8   QKRNEQLKRWIGSETDLEPPVVKRKK--TKVKFDDG-AVFLAACSSGDTEEVLRLLERGA 64

Query: 87  DPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVD 146
           D + +   G    T L  A    +  +V  L+   G  +    + G   LH AA  G++D
Sbjct: 65  DINYANVDG---LTALHQACIDDNVDMVKFLVEN-GANINQPDNEGWIPLHAAASCGYLD 120

Query: 147 VVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHV 206
           + + L+S+   +    + +G T L +A +    E+++  +                A   
Sbjct: 121 IAEYLISQGAHVGAV-NSEGDTPLDIAEEEAMEELLQNEVNRQGV-------DIEAARKE 172

Query: 207 ATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 241
             R    +   + L+    N     +   TAL +A
Sbjct: 173 EERIMLRDAR-QWLNSGHINDVRHAKSGGTALHVA 206

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 77.5 bits (192), Expect = 5e-16
 Identities = 23/117 (19%), Positives = 39/117 (33%), Gaps = 4/117 (3%)

Query: 125 LEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKL 184
           ++++ +  K         G    ++  + K  +   +           A      E V  
Sbjct: 1   MKMADAKQKRNEQLKRWIGSETDLEPPVVKRKK--TKVKFDDGAVFLAACSSGDTEEVLR 58

Query: 185 LLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 241
           LLE  A I    +  G TALH A      ++V  L+     N+N    +    L  A
Sbjct: 59  LLERGADINY-ANVDGLTALHQACIDDNVDMVKFLVEN-GANINQPDNEGWIPLHAA 113

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  153 bits (390), Expect = 2e-43
 Identities = 47/242 (19%), Positives = 89/242 (36%), Gaps = 25/242 (10%)

Query: 13  EVAEIRSSV-VNEVNELGETALFTAADKGHIEVVNELLKYS----TKEGLTRKNRSGFDP 67
           ++    SS    + +  G +A + A    ++ +V  LL         E           P
Sbjct: 14  QLKSFLSSKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLENEF--------P 65

Query: 68  LHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEI 127
           LH AA      IV++LL      SQ       T L  A   G+   V   + K+  L+  
Sbjct: 66  LHQAATLEDTKIVKILLFSGLDDSQFDD-KGNTALYYAVDSGNMQTVKLFVKKNWRLMFY 124

Query: 128 SRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLE 187
            ++  K + + A     V +V   LS+ P           + +H+ +K    +++ LLL+
Sbjct: 125 GKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFD--LAILLSCIHITIKNGHVDMMILLLD 182

Query: 188 ADAAIVMLPDKFGNT-ALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTA----LDIAE 242
              +     +       + +A   K  E++  L    D N+   + + +       +IA+
Sbjct: 183 YMTSTNT-NNSLLFIPDIKLAIDNKDIEMLQALFKY-DINIY--SANLENVLLDDAEIAK 238

Query: 243 GL 244
            +
Sbjct: 239 MI 240

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  147 bits (374), Expect = 5e-41
 Identities = 36/226 (15%), Positives = 73/226 (32%), Gaps = 21/226 (9%)

Query: 22  VNEVNELGETALFTAADKGHIEVVNELLKYSTKEG--LTRKNRSGFDPLHIAAVQGHHAI 79
            N +    E  L  AA     ++V  LL      G   ++ +  G   L+ A   G+   
Sbjct: 57  KNLLE--NEFPLHQAATLEDTKIVKILLF----SGLDDSQFDDKGNTALYYAVDSGNMQT 110

Query: 80  VQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFA 139
           V++ +  +  L         T    A      ++V+  LS+         +   + +H  
Sbjct: 111 VKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSE--IPSTFDLAILLSCIHIT 168

Query: 140 ARQGHVDVVKALLSKDPQLARRTDKKGQT-ALHMAVKGQSCEVVKLLLEADAAIVMLPDK 198
            + GHVD++  LL          +       + +A+  +  E+++ L + D  I      
Sbjct: 169 IKNGHVDMMILLLDYMTSTNTN-NSLLFIPDIKLAIDNKDIEMLQALFKYDINI------ 221

Query: 199 FGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGL 244
              +A          EI   ++        + +      +     L
Sbjct: 222 --YSANLENVLLDDAEIAKMIIEK-HVEYKSDSYTKDLDIVKNNKL 264

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  139 bits (352), Expect = 6e-38
 Identities = 37/207 (17%), Positives = 71/207 (34%), Gaps = 11/207 (5%)

Query: 36  AADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTG 95
             +    + +   L     +   + +  G    + A    +  +V  LL+     +    
Sbjct: 6   RINTWKSKQLKSFLS---SKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLE- 61

Query: 96  PSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKD 155
             N  PL  AAT   T +V  LL   G         G  AL++A   G++  VK  + K+
Sbjct: 62  --NEFPLHQAATLEDTKIVKILLFS-GLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKN 118

Query: 156 PQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEI 215
            +L        +T+ + AV      +V   L    +          + +H+  +    ++
Sbjct: 119 WRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTF--DLAILLSCIHITIKNGHVDM 176

Query: 216 VTELLSLPDTNVNALTRDHKT-ALDIA 241
           +  LL    T+ N          + +A
Sbjct: 177 MILLLDY-MTSTNTNNSLLFIPDIKLA 202

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  128 bits (323), Expect = 9e-34
 Identities = 34/209 (16%), Positives = 71/209 (33%), Gaps = 16/209 (7%)

Query: 22  VNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFD-PLHIAAVQGHHAIV 80
            ++ ++ G TAL+ A D G+++ V   +K + +  L    ++G+    + A +    +IV
Sbjct: 88  DSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWR--LMFYGKTGWKTSFYHAVMLNDVSIV 145

Query: 81  QVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGK-NALHFA 139
              L   PS          + +      GH  ++  LL         + S      +  A
Sbjct: 146 SYFLSEIPSTFDLA--ILLSCIHITIKNGHVDMMILLLDY-MTSTNTNNSLLFIPDIKLA 202

Query: 140 ARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKF 199
                +++++AL   D            +A    V     E+ K+++E            
Sbjct: 203 IDNKDIEMLQALFKYDIN--------IYSANLENVLLDDAEIAKMIIEKHVEY-KSDSYT 253

Query: 200 GNTALHVATRKKRTEIVTELLSLPDTNVN 228
            +  +    +        + L L   N  
Sbjct: 254 KDLDIVKNNKLDEIISKNKELRLMYVNCV 282

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 47.5 bits (114), Expect = 4e-06
 Identities = 15/76 (19%), Positives = 26/76 (34%), Gaps = 7/76 (9%)

Query: 166 GQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDT 225
           G   L      +S ++   L   D       D  G++A + A       +V  LL+    
Sbjct: 1   GMD-LSRINTWKSKQLKSFLSSKD---TFKADVHGHSASYYAIADNNVRLVCTLLNA-GA 55

Query: 226 NVNALTRDHKTALDIA 241
             N    +++  L  A
Sbjct: 56  LKNL--LENEFPLHQA 69

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  155 bits (394), Expect = 4e-43
 Identities = 43/248 (17%), Positives = 82/248 (33%), Gaps = 26/248 (10%)

Query: 13  EVAEIRSSVVNEVNELGETALFTAADKG--HIEVVNELLKYSTKEGLTRKNRSGFDPLHI 70
           EV EI     +  +  G+TAL      G  ++E++  L++       T K+++   PL  
Sbjct: 125 EVNEI---GSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGAS--PTAKDKADETPLMR 179

Query: 71  AAVQGHHAIVQVLLDHDPSLSQ----TTGPSNATPLVSAATRGHTAVVNELLSKDGGLLE 126
           A    +   + +++D  PS S            + L  A       V    +   G  + 
Sbjct: 180 AMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEM-GIDVN 238

Query: 127 ISRSNGKNALHFAARQGHVDVVKALLSKDPQLARR------------TDKKGQTALHMAV 174
           +  +     L+ + R   V + K LL K      +                    +  A 
Sbjct: 239 MEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAA 298

Query: 175 KGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDH 234
                EV++LL E    + +     G        +K    +    L+ P   V   +R  
Sbjct: 299 DPSKQEVLQLLQEKLDEV-VRSLNTGAGGAVKRKKKAAPAVKRMKLA-PSAPVRTRSRSR 356

Query: 235 KTALDIAE 242
             +  +++
Sbjct: 357 ARSSAVSK 364

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  153 bits (389), Expect = 2e-42
 Identities = 41/230 (17%), Positives = 79/230 (34%), Gaps = 34/230 (14%)

Query: 22  VNEVNELGETALFTAADKGHIEVVNELLKY----STKEGLTRKNRSGFDPLHIAAVQGHH 77
               N  G TAL  A   G ++    L       S   G          P+H+A +    
Sbjct: 46  PTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSLWHGQK--------PIHLAVMANKT 97

Query: 78  AIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALH 137
            +V  L++               P           V             +    G+ ALH
Sbjct: 98  DLVVALVEG-------AKERGQMPESLLNECDEREVN-------EIGSHVKHCKGQTALH 143

Query: 138 FAARQG--HVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADA----A 191
           +    G  +++++K L+        + DK  +T L  A++ ++ E + L+++        
Sbjct: 144 WCVGLGPEYLEMIKILVQLGASPTAK-DKADETPLMRAMEFRNREALDLMMDTVPSKSSL 202

Query: 192 IVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 241
            +   +K GN+ LH A      ++    + +   +VN    +H   L ++
Sbjct: 203 RLDYANKQGNSHLHWAILINWEDVAMRFVEM-GIDVNMEDNEHTVPLYLS 251

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  149 bits (379), Expect = 5e-41
 Identities = 45/228 (19%), Positives = 79/228 (34%), Gaps = 30/228 (13%)

Query: 22  VNEVNELGETALFTAADKGHIEVVNELLKYSTKEG--LTRKNRSGFDPLHIAAVQGHHAI 79
             + ++     +  AA KG  + V  L++     G   T +NR G   LH+A   G    
Sbjct: 13  RIKSDDENMEKIHVAARKGQTDEVRRLIET----GVSPTIQNRFGCTALHLACKFGCVDT 68

Query: 80  VQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFA 139
            + L       S   G     P+  A     T +V  L+         ++  G+      
Sbjct: 69  AKYLASVGEVHSLWHG---QKPIHLAVMANKTDLVVALVEG-------AKERGQMPESLL 118

Query: 140 ARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVK--GQSCEVVKLLLEADAAIVMLPD 197
                 +V +               KGQTALH  V    +  E++K+L++  A+     D
Sbjct: 119 NECDEREVNEIGSHV-------KHCKGQTALHWCVGLGPEYLEMIKILVQLGASP-TAKD 170

Query: 198 KFGNTALHVATRKKRTEIVTELLSLPDT----NVNALTRDHKTALDIA 241
           K   T L  A   +  E +  ++    +     ++   +   + L  A
Sbjct: 171 KADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWA 218

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  152 bits (387), Expect = 5e-42
 Identities = 53/251 (21%), Positives = 85/251 (33%), Gaps = 27/251 (10%)

Query: 13  EVAEIRSS---VVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLH 69
            + +   +   +  E        L T A  G   +   + + S         R     LH
Sbjct: 75  FLGDFNHTNLQIPTEPEPESPIKLHTEA-AGSYAITEPITRESVNI---IDPRHNRTVLH 130

Query: 70  IAAVQGHHAIVQVLLDHDPSLSQTTGPS-NA------TPLVSAATRGHTAVVNELLSKDG 122
             A        + L+ H+       G   NA      TPL+ A       +V  L+   G
Sbjct: 131 WIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKA-G 189

Query: 123 GLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLAR--RTDKKGQTALHMAVKGQSCE 180
               I   + ++ALH AA      ++  +L+           D+ G TAL +    +  +
Sbjct: 190 ADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRD 249

Query: 181 ---VVKLLLEADAAIVMLP-------DKFGNTALHVATRKKRTEIVTELLSLPDTNVNAL 230
                KLL+E  A +              G TALH A +     IV  L+    +N +  
Sbjct: 250 QVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQ 309

Query: 231 TRDHKTALDIA 241
             D KT + +A
Sbjct: 310 DEDGKTPIMLA 320

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  149 bits (379), Expect = 6e-41
 Identities = 51/238 (21%), Positives = 86/238 (36%), Gaps = 21/238 (8%)

Query: 22  VNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTR------KNRSGFDPLHIAAVQG 75
           + +      T L   A     E   +L+ +  KE +         +     PL +A +  
Sbjct: 119 IIDPRH-NRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLAR 177

Query: 76  HHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKD--GGLLEISRSNGK 133
              +V  L+      +     S  + L  AA      ++  +L+     G +E    NG 
Sbjct: 178 RRRLVAYLMKAGADPTIYNK-SERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGM 236

Query: 134 NALHFAARQGH---VDVVKALLSK-------DPQLARRTDKKGQTALHMAVKGQSCEVVK 183
            AL   A       V   K L+ K                 KG+TALH A +  +  +VK
Sbjct: 237 TALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVK 296

Query: 184 LLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 241
            L+    +     D+ G T + +A ++ R E+V  L+     +V A+     TA  +A
Sbjct: 297 YLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQ-GASVEAVDATDHTARQLA 353

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  146 bits (370), Expect = 1e-39
 Identities = 49/217 (22%), Positives = 80/217 (36%), Gaps = 25/217 (11%)

Query: 22  VNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQ 81
           VN ++    T L  A       +V  L+K       T  N+S    LH AA      ++ 
Sbjct: 159 VNAMDCDENTPLMLAVLARRRRLVAYLMKAGAD--PTIYNKSERSALHQAAANRDFGMMV 216

Query: 82  VLLDHDPSLSQTTGPSN--ATPLVSAATRGHT---AVVNELLSK-------DGGLLEISR 129
            +L+                T L+  A        A    L+ K            +  +
Sbjct: 217 YMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEK 276

Query: 130 SNGKNALHFAARQGHVDVVKALLS-----KDPQLARRTDKKGQTALHMAVKGQSCEVVKL 184
             G+ ALH+AA+  ++ +VK L+      KD Q     D+ G+T + +A +    EVV  
Sbjct: 277 YKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQ-----DEDGKTPIMLAAQEGRIEVVMY 331

Query: 185 LLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLS 221
           L++  A++    D   +TA  +A       IV     
Sbjct: 332 LIQQGASV-EAVDATDHTARQLAQANNHHNIVDIFDR 367

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  137 bits (348), Expect = 1e-36
 Identities = 40/251 (15%), Positives = 83/251 (33%), Gaps = 30/251 (11%)

Query: 23  NEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQV 82
           ++     + +L  A+  G+I+                       P       G+  +   
Sbjct: 31  HQSITSSQHSLLEASYDGYIKRQRNE-----------LQHYSLYPNPQGYGNGNDFLGDF 79

Query: 83  LLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQ 142
              +    ++   P +   L + A  G  A+   +  +   +  I   + +  LH+ A  
Sbjct: 80  NHTNLQIPTEPE-PESPIKLHTEA-AGSYAITEPITRE--SVNIIDPRHNRTVLHWIASN 135

Query: 143 GHVDVVKALLSKDPQLAR-------RTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVML 195
              +  + L+  + +            D    T L +AV  +   +V  L++A  A   +
Sbjct: 136 SSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAG-ADPTI 194

Query: 196 PDKFGNTALHVATRKKRTEIVTELLSLPDT--NVNALTRDHKTALDIA--EGLPSSEEAS 251
            +K   +ALH A   +   ++  +L+      ++  L R+  TAL I          +  
Sbjct: 195 YNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNE---GRDQV 251

Query: 252 EIKDCLARCGA 262
                L   GA
Sbjct: 252 ASAKLLVEKGA 262

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  137 bits (347), Expect = 2e-36
 Identities = 38/241 (15%), Positives = 74/241 (30%), Gaps = 27/241 (11%)

Query: 21  VVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIV 80
             NE+              G+  + +     +  +  T         LH  A  G +AI 
Sbjct: 53  QRNELQHYSLYPNPQGYGNGNDFLGDFNH--TNLQIPTEPEPESPIKLHTEA-AGSYAIT 109

Query: 81  QVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISR--------SNG 132
           + +     ++       N T L   A+        +L+  +     I+          + 
Sbjct: 110 EPITRESVNIIDPR--HNRTVLHWIASNSSAEKSEDLIVHEAKEC-IAAGADVNAMDCDE 166

Query: 133 KNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADA-- 190
              L  A       +V  L+          +K  ++ALH A   +   ++  +L +    
Sbjct: 167 NTPLMLAVLARRRRLVAYLMKAGADPTIY-NKSERSALHQAAANRDFGMMVYMLNSTKLK 225

Query: 191 AIVMLPDKFGNTALHVATRKKRTEIV--TELL--------SLPDTNVNALTRDHKTALDI 240
             +   D+ G TAL +    +  + V   +LL               ++     +TAL  
Sbjct: 226 GDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHY 285

Query: 241 A 241
           A
Sbjct: 286 A 286

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  123 bits (312), Expect = 1e-31
 Identities = 35/181 (19%), Positives = 65/181 (35%), Gaps = 14/181 (7%)

Query: 22  VNEVNELGETALFTAADKGHIEVVNELLKYSTKEG--LTRKNRSGFDPLHIAAVQGHH-- 77
               N+   +AL  AA      ++   +  STK    +   +R+G   L I A       
Sbjct: 192 PTIYNKSERSALHQAAANRDFGMM-VYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQ 250

Query: 78  -AIVQVLLDHDPSLSQTTGPSNA-------TPLVSAATRGHTAVVNELLSKDGGLLEISR 129
            A  ++L++    +                T L  AA   +  +V  L+ + G   +   
Sbjct: 251 VASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQD 310

Query: 130 SNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEAD 189
            +GK  +  AA++G ++VV  L+ +   +    D    TA  +A       +V +     
Sbjct: 311 EDGKTPIMLAAQEGRIEVVMYLIQQGASV-EAVDATDHTARQLAQANNHHNIVDIFDRCR 369

Query: 190 A 190
            
Sbjct: 370 P 370

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 92.3 bits (230), Expect = 1e-20
 Identities = 33/154 (21%), Positives = 53/154 (34%), Gaps = 28/154 (18%)

Query: 22  VNEVNELGETALFTAADKGHIEVVN--ELL-------KYSTKEGLTRKNRSGFDPLHIAA 72
           + E++  G TAL   A     + V   +LL        Y        +   G   LH AA
Sbjct: 228 IEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAA 287

Query: 73  VQGHHAIVQVLLDH---DPSLSQTTGPSNA------TPLVSAATRGHTAVVNELLSKDGG 123
              +  IV+ L+     +          +       TP++ AA  G   VV  L+ + G 
Sbjct: 288 QVSNMPIVKYLVGEKGSNK---------DKQDEDGKTPIMLAAQEGRIEVVMYLIQQ-GA 337

Query: 124 LLEISRSNGKNALHFAARQGHVDVVKALLSKDPQ 157
            +E   +    A   A    H ++V       P+
Sbjct: 338 SVEAVDATDHTARQLAQANNHHNIVDIFDRCRPE 371

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 67.3 bits (165), Expect = 2e-12
 Identities = 14/123 (11%), Positives = 31/123 (25%), Gaps = 14/123 (11%)

Query: 119 SKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQS 178
            +       S ++ +++L  A+  G++   +  L                         +
Sbjct: 24  EEKNRKNHQSITSSQHSLLEASYDGYIKRQRNELQHY----------SLYPNPQGYGNGN 73

Query: 179 CEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTAL 238
             +          I   P+      LH         I   +      N+    R ++T L
Sbjct: 74  DFLGDFNHTNL-QIPTEPEPESPIKLHTEA-AGSYAITEPITRE-SVNIID-PRHNRTVL 129

Query: 239 DIA 241
              
Sbjct: 130 HWI 132

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  147 bits (374), Expect = 8e-42
 Identities = 41/191 (21%), Positives = 76/191 (39%), Gaps = 14/191 (7%)

Query: 22  VNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQ 81
           +  + ++ +T  +    KG   ++              +  S  +PLH AA +G+ + ++
Sbjct: 38  IIYITDMSDTNWWKGTSKGRTGLIPSNYVA-------EQAESIDNPLHEAAKRGNLSWLR 90

Query: 82  VLLDH--DPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFA 139
             LD+    +     G   +T L  A   GH  +V  L ++    L      G  ALH A
Sbjct: 91  ECLDNRVGVNGLDKAG---STALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAA 147

Query: 140 ARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKF 199
           A +G+ D+V+ LL+K  +   R + + + A  MA       ++K     DA    L +  
Sbjct: 148 AWKGYADIVQLLLAKGARTDLR-NIEKKLAFDMATNAACASLLKKKQGTDAVRT-LSNAE 205

Query: 200 GNTALHVATRK 210
                  +  +
Sbjct: 206 DYLDDEDSDLE 216

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  147 bits (373), Expect = 1e-41
 Identities = 43/216 (19%), Positives = 76/216 (35%), Gaps = 13/216 (6%)

Query: 29  GETALFTAADKGHIEVVNELLKYSTKEG-LTRKNRSGFDPLHIAAVQGHHAIVQVLLDHD 87
           G+  +F A         +EL     +EG +                +G   ++      +
Sbjct: 12  GQVKVFRALYTFEPRTPDELYI---EEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAE 68

Query: 88  PSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDV 147
                    S   PL  AA RG+ + + E L      +      G  AL++A   GH D+
Sbjct: 69  ------QAESIDNPLHEAAKRGNLSWLRECLDN-RVGVNGLDKAGSTALYWACHGGHKDI 121

Query: 148 VKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVA 207
           V+ L ++      + +K G TALH A      ++V+LLL   A    L +     A  +A
Sbjct: 122 VEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGART-DLRNIEKKLAFDMA 180

Query: 208 TRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEG 243
           T      ++ +     D        +     + ++ 
Sbjct: 181 TNAACASLLKKKQGT-DAVRTLSNAEDYLDDEDSDL 215

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  128 bits (323), Expect = 1e-34
 Identities = 41/181 (22%), Positives = 72/181 (39%), Gaps = 9/181 (4%)

Query: 61  NRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSK 120
            + G   +  A           L   +  +   T  S+ T      ++G T ++      
Sbjct: 9   VKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSD-TNWWKGTSKGRTGLIP----- 62

Query: 121 DGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCE 180
               +     +  N LH AA++G++  ++  L     +    DK G TAL+ A  G   +
Sbjct: 63  -SNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGL-DKAGSTALYWACHGGHKD 120

Query: 181 VVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDI 240
           +V++L       +   +K G+TALH A  K   +IV  LL+      +    + K A D+
Sbjct: 121 IVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAK-GARTDLRNIEKKLAFDM 179

Query: 241 A 241
           A
Sbjct: 180 A 180

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  102 bits (256), Expect = 3e-25
 Identities = 28/153 (18%), Positives = 49/153 (32%), Gaps = 17/153 (11%)

Query: 99  ATPLVSAATRGHTAVVN----------ELLSKDGGLLEISRSNGKNALHFAARQGHVDVV 148
           + P       G   V            + L  + G +                +G   ++
Sbjct: 2   SKPPPKPVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLI 61

Query: 149 KALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVAT 208
            +    +        +     LH A K  +   ++  L+     V   DK G+TAL+ A 
Sbjct: 62  PSNYVAE------QAESIDNPLHEAAKRGNLSWLRECLDNR-VGVNGLDKAGSTALYWAC 114

Query: 209 RKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 241
                +IV  L + P+  +N   +   TAL  A
Sbjct: 115 HGGHKDIVEMLFTQPNIELNQQNKLGDTALHAA 147

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 89.2 bits (222), Expect = 1e-20
 Identities = 28/129 (21%), Positives = 48/129 (37%), Gaps = 11/129 (8%)

Query: 22  VNEVNELGETALFTAADKGHIEVVNELLKYSTKEG--LTRKNRSGFDPLHIAAVQGHHAI 79
           VN +++ G TAL+ A   GH ++V  L     +    L ++N+ G   LH AA +G+  I
Sbjct: 99  VNGLDKAGSTALYWACHGGHKDIVEMLFT---QPNIELNQQNKLGDTALHAAAWKGYADI 155

Query: 80  VQVLLDH--DPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALH 137
           VQ+LL       L              A      +++ +    D      +         
Sbjct: 156 VQLLLAKGARTDLRNIEK---KLAFDMATNAACASLLKKKQGTDAVRTLSNA-EDYLDDE 211

Query: 138 FAARQGHVD 146
            +  + H  
Sbjct: 212 DSDLEHHHH 220

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score =  152 bits (385), Expect = 8e-42
 Identities = 49/253 (19%), Positives = 81/253 (32%), Gaps = 37/253 (14%)

Query: 21  VVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIV 80
           +V  +      A   AA+ GH+ V+N L + +  E +       +    +AA  GH  ++
Sbjct: 120 IVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVL 179

Query: 81  QVLLDHDPSL-SQTTGPSNATPLVSAATR-GHTAVVNELLSKD------------GGLLE 126
             L +  P+  +      N      AA   GH  V+N LL                G   
Sbjct: 180 NRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKY 239

Query: 127 I-----SRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKG---QS 178
           +        N    +H A +  + D V  L++K          +G   L   ++      
Sbjct: 240 VNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSEC------LQGFYMLRNLIRRNDEVL 293

Query: 179 CEVVKLLLEADA----AIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNV-----NA 229
            + ++ LL        A         N  L +A R         LLS+P         N 
Sbjct: 294 LDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPSVLALTKANNY 353

Query: 230 LTRDHKTALDIAE 242
              +    LD+  
Sbjct: 354 YINETGGRLDLRA 366

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 95.0 bits (236), Expect = 2e-21
 Identities = 28/224 (12%), Positives = 57/224 (25%), Gaps = 13/224 (5%)

Query: 2   VGNLSGAEFDTEVAEIRSSVVNE-VNELGETALFTAADKGHIEVVNELLKYSTKEGLTRK 60
           + N+   E D ++  I   +              +     + E ++  L           
Sbjct: 6   IHNIENYENDPQLRLIPWILWENLFQHFISANELSLMTLSYKEAIHIFLP--------GT 57

Query: 61  NRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSK 120
                    +     H+      L  D                          +  LL+ 
Sbjct: 58  KNMEQVRQLLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTS 117

Query: 121 DGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQL-ARRTDKKGQTALHMAVKGQSC 179
              ++++ ++    A   AA  GH+ V+  L    P         +   A  +A +    
Sbjct: 118 -DEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHL 176

Query: 180 EVVKLLLEADAAIV-MLPDKFGNTALHVATRKK-RTEIVTELLS 221
            V+  L E        +       A   A   +    ++  LL 
Sbjct: 177 HVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLD 220

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 75.4 bits (185), Expect = 6e-15
 Identities = 27/183 (14%), Positives = 49/183 (26%), Gaps = 26/183 (14%)

Query: 25  VNELGETALFTAA-DKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVL 83
           +      A   AA  +GH  V+N LL       L       F+             V  L
Sbjct: 194 IQAENYYAFRWAAVGRGHHNVINFLLDCPVM--LAYAEIHEFEYGEKYVNPFIARHVNRL 251

Query: 84  LD------------HDPSLSQTTGPSNATPLVSAATRGHTAVVNEL-------LSKDGGL 124
            +                ++++        L +   R    +++++         K    
Sbjct: 252 KEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAP 311

Query: 125 LEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKL 184
                 +    L  A R G+      LLS    L            ++   G   ++  +
Sbjct: 312 TATIPGDANELLRLALRLGNQGACALLLSIPSVL----ALTKANNYYINETGGRLDLRAV 367

Query: 185 LLE 187
            LE
Sbjct: 368 ALE 370

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 55.0 bits (132), Expect = 2e-08
 Identities = 13/65 (20%), Positives = 20/65 (30%), Gaps = 5/65 (7%)

Query: 22  VNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQ 81
              +       L  A   G+      LL   +   LT+ N       +I    G   +  
Sbjct: 312 TATIPGDANELLRLALRLGNQGACALLLSIPSVLALTKAN-----NYYINETGGRLDLRA 366

Query: 82  VLLDH 86
           V L+H
Sbjct: 367 VALEH 371

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  147 bits (373), Expect = 3e-41
 Identities = 50/236 (21%), Positives = 86/236 (36%), Gaps = 24/236 (10%)

Query: 22  VNEVNELGETALFTAA-------------DKGHIEVVNELLKYSTKEG---LTRKNRSGF 65
           VN     G T L  A+             ++    V+++ +      G     + +R+G 
Sbjct: 3   VNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQ----GASLHNQTDRTGE 58

Query: 66  DPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLL 125
             LH+AA        + LL+     +        TPL +A +     V   L+      L
Sbjct: 59  TALHLAARYSRSDAAKRLLEASADANIQDN-MGRTPLHAAVSADAQGVFQILIRNRATDL 117

Query: 126 EISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLL 185
           +    +G   L  AAR     +++ L++    +    D  G++ALH A    + +   +L
Sbjct: 118 DARMHDGTTPLILAARLAVEGMLEDLINSHADVNAV-DDLGKSALHWAAAVNNVDAAVVL 176

Query: 186 LEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 241
           L+  A   M  +    T L +A R+   E    LL     N +      +   DIA
Sbjct: 177 LKNGANKDM-QNNREETPLFLAAREGSYETAKVLLDH-FANRDITDHMDRLPRDIA 230

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  146 bits (372), Expect = 4e-41
 Identities = 50/210 (23%), Positives = 85/210 (40%), Gaps = 21/210 (10%)

Query: 20  SVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAI 79
           S+ N+ +  GETAL  AA     +    LL+ S       ++  G  PLH A       +
Sbjct: 48  SLHNQTDRTGETALHLAARYSRSDAAKRLLEASAD--ANIQDNMGRTPLHAAVSADAQGV 105

Query: 80  VQVLLDHDPSLSQTTGPSN--------ATPLVSAATRGHTAVVNELLSKDGGLLEISRSN 131
            Q+L+ +          ++         TPL+ AA      ++ +L++     +      
Sbjct: 106 FQILIRN--------RATDLDARMHDGTTPLILAARLAVEGMLEDLINS-HADVNAVDDL 156

Query: 132 GKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAA 191
           GK+ALH+AA   +VD    LL        + + + +T L +A +  S E  K+LL+  A 
Sbjct: 157 GKSALHWAAAVNNVDAAVVLLKNGANKDMQ-NNREETPLFLAAREGSYETAKVLLDHFAN 215

Query: 192 IVMLPDKFGNTALHVATRKKRTEIVTELLS 221
              + D        +A  +   +IV  L  
Sbjct: 216 R-DITDHMDRLPRDIAQERMHHDIVRLLDL 244

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  145 bits (368), Expect = 8e-41
 Identities = 50/202 (24%), Positives = 84/202 (41%), Gaps = 5/202 (2%)

Query: 20  SVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAI 79
           S+ N+ +  GETAL  AA     +    LL+ S       ++  G  PLH A       +
Sbjct: 16  SLHNQTDRTGETALHLAARYSRSDAAKRLLEASAD--ANIQDNMGRTPLHAAVSADAQGV 73

Query: 80  VQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFA 139
            Q+L+ +  +          TPL+ AA      ++ +L++     +      GK+ALH+A
Sbjct: 74  FQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINS-HADVNAVDDLGKSALHWA 132

Query: 140 ARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKF 199
           A   +VD    LL        + + + +T L +A +  S E  K+LL+  A    + D  
Sbjct: 133 AAVNNVDAAVVLLKNGANKDMQ-NNREETPLFLAAREGSYETAKVLLDHFANR-DITDHM 190

Query: 200 GNTALHVATRKKRTEIVTELLS 221
                 +A  +   +IV  L  
Sbjct: 191 DRLPRDIAQERMHHDIVRLLDE 212

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  136 bits (344), Expect = 2e-37
 Identities = 46/209 (22%), Positives = 81/209 (38%), Gaps = 19/209 (9%)

Query: 40  GHIEVVNELLKYSTKEG---LTRKNRSGFDPLHIAAVQGHHAIVQVLLDH--DPSLSQTT 94
               V+++ +      G     + +R+G   LH+AA        + LL+   D ++    
Sbjct: 2   DAPAVISDFIYQ----GASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNM 57

Query: 95  GPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSK 154
           G    TPL +A +     V   L+      L+    +G   L  AAR     +++ L++ 
Sbjct: 58  G---RTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINS 114

Query: 155 --DPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKR 212
             D       D  G++ALH A    + +   +LL+  A   M  +    T L +A R+  
Sbjct: 115 HADVN---AVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDM-QNNREETPLFLAAREGS 170

Query: 213 TEIVTELLSLPDTNVNALTRDHKTALDIA 241
            E   ++L     N +      +   DIA
Sbjct: 171 YETA-KVLLDHFANRDITDHMDRLPRDIA 198

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  143 bits (364), Expect = 1e-40
 Identities = 53/201 (26%), Positives = 82/201 (40%), Gaps = 9/201 (4%)

Query: 26  NELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLD 85
                  L  A  +   +V   L   + +  +   +  G  PL+IA       I + L+D
Sbjct: 3   TYEVGALLEAANQRDTKKVKEILQDTTYQ--VDEVDTEGNTPLNIAVHNNDIEIAKALID 60

Query: 86  HDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHV 145
               ++      + +P + A  +G T ++  +L      L      G NAL  AA +GH+
Sbjct: 61  RGADINLQNS-ISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHI 119

Query: 146 DVVKALLSKDPQLARRTDKKGQTALHMAVKGQSC-----EVVKLLLEADAAIVMLPDKFG 200
           D VK LL    +     +  G TAL  AV  +       ++VKLL+E  A    + D  G
Sbjct: 120 DNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQ-SIKDNSG 178

Query: 201 NTALHVATRKKRTEIVTELLS 221
            TA+  A +K  TEI   L  
Sbjct: 179 RTAMDYANQKGYTEISKILAQ 199

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  134 bits (341), Expect = 3e-37
 Identities = 39/187 (20%), Positives = 70/187 (37%), Gaps = 8/187 (4%)

Query: 60  KNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLS 119
           K       L  A  +    + ++L D    + +       TPL  A       +   L+ 
Sbjct: 2   KTYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDT-EGNTPLNIAVHNNDIEIAKALID 60

Query: 120 KDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSC 179
           + G  + +  S   +   +A  QG  +++  +L        + ++ G  AL  A +    
Sbjct: 61  R-GADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHI 119

Query: 180 EVVKLLLEADAAIVMLPDKFGNTALHVA-----TRKKRTEIVTELLSLPDTNVNALTRDH 234
           + VKLLLE     +   + FG TAL  A       +   +IV  L+     + +      
Sbjct: 120 DNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMEN-GADQSIKDNSG 178

Query: 235 KTALDIA 241
           +TA+D A
Sbjct: 179 RTAMDYA 185

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 99.8 bits (250), Expect = 2e-24
 Identities = 34/147 (23%), Positives = 68/147 (46%), Gaps = 23/147 (15%)

Query: 22  VNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQ 81
           +N  N + ++    A  +G  E++  +LK++T + L + NR G + L  AA +GH   V+
Sbjct: 65  INLQNSISDSPYLYAGAQGRTEILAYMLKHATPD-LNKHNRYGGNALIPAAEKGHIDNVK 123

Query: 82  VLLDHDPSLSQTTGPSN--------ATPLVSAAT-----RGHTAVVNELLSKDGGLLEIS 128
           +LL+         G  +         T L+ A       + +  +V  L+   G    I 
Sbjct: 124 LLLED--------GREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMEN-GADQSIK 174

Query: 129 RSNGKNALHFAARQGHVDVVKALLSKD 155
            ++G+ A+ +A ++G+ ++ K L   +
Sbjct: 175 DNSGRTAMDYANQKGYTEISKILAQYN 201

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score =  116 bits (292), Expect = 4e-30
 Identities = 43/195 (22%), Positives = 69/195 (35%), Gaps = 25/195 (12%)

Query: 22  VNEVNELGETALFTAADKGHIEVVNELLKYS---TKEGLTRKNRSGFDPLHIAAVQGHHA 78
           V++   +GETAL  AA   ++E    L++ +     E +T +   G   LHIA +  +  
Sbjct: 30  VHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVN 89

Query: 79  IVQVLLDH------------DPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLE 126
           +V+ LL                            PL  AA  G   +V  L+   G  + 
Sbjct: 90  LVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEH-GADIR 148

Query: 127 ISRSNGKNALHFAARQGHVDVVKA----LLSKD-----PQLARRTDKKGQTALHMAVKGQ 177
              S G   LH    Q +          LLS D       L    + +G T   +A    
Sbjct: 149 AQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEG 208

Query: 178 SCEVVKLLLEADAAI 192
           +  + + L++    I
Sbjct: 209 NIVMFQHLMQKRKHI 223

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score =  111 bits (281), Expect = 1e-28
 Identities = 45/196 (22%), Positives = 75/196 (38%), Gaps = 18/196 (9%)

Query: 100 TPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLA 159
           +PL+ AA       +++LL  +G  +    + G+ ALH AA   +++    L+   P+L 
Sbjct: 5   SPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELV 64

Query: 160 RRT----DKKGQTALHMAVKGQSCEVVKLLLEADAAI------------VMLPDKFGNTA 203
                    +GQTALH+AV  Q+  +V+ LL   A++                  +G   
Sbjct: 65  FEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHP 124

Query: 204 LHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGA- 262
           L  A      EIV  L+     ++ A      T L I    P+   A ++ + L      
Sbjct: 125 LSFAACVGSEEIVRLLIEH-GADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGG 183

Query: 263 VRANELNQPRDELRKT 278
                L    +    T
Sbjct: 184 DHLKSLELVPNNQGLT 199

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 64.2 bits (157), Expect = 6e-12
 Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 4/80 (5%)

Query: 166 GQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLS---- 221
            ++ L +A K    + +  LL+ +   V      G TALH+A      E    L+     
Sbjct: 3   WESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPE 62

Query: 222 LPDTNVNALTRDHKTALDIA 241
           L    + +   + +TAL IA
Sbjct: 63  LVFEPMTSELYEGQTALHIA 82

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 42.2 bits (100), Expect = 1e-04
 Identities = 10/43 (23%), Positives = 20/43 (46%)

Query: 199 FGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 241
              + L +A ++   + +++LL      V+      +TAL IA
Sbjct: 2   IWESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIA 44

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  135 bits (343), Expect = 6e-38
 Identities = 39/170 (22%), Positives = 63/170 (37%), Gaps = 4/170 (2%)

Query: 67  PLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLE 126
            +H  A QG    ++  L    +L         TPL+ A+  G    V  LL   G    
Sbjct: 5   SIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEW-GADPH 63

Query: 127 ISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLL 186
           I     ++AL  A+  G+ D+V  LL +D  +    D  G T L  AV+G   + V+ LL
Sbjct: 64  ILAKERESALSLASTGGYTDIVGLLLERDVDINIY-DWNGGTPLLYAVRGNHVKCVEALL 122

Query: 187 EADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKT 236
              A  +      G T + +A      ++   + +     +         
Sbjct: 123 ARGAD-LTTEADSGYTPMDLAVALGYRKVQQVIENH-ILKLFQSNLVPAD 170

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  134 bits (339), Expect = 2e-37
 Identities = 41/176 (23%), Positives = 73/176 (41%), Gaps = 9/176 (5%)

Query: 29  GETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDH-- 86
              ++   A +G ++ + E L+      + + +  GF PL  A+  G    V+ LL+   
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKGDNL-VNKPDERGFTPLIWASAFGEIETVRFLLEWGA 60

Query: 87  DPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVD 146
           DP +         + L  A+T G+T +V  LL +    + I   NG   L +A R  HV 
Sbjct: 61  DPHILAKER---ESALSLASTGGYTDIVGLLLER-DVDINIYDWNGGTPLLYAVRGNHVK 116

Query: 147 VVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNT 202
            V+ALL++   L       G T + +AV     +V +++       +   +     
Sbjct: 117 CVEALLARGADLTTE-ADSGYTPMDLAVALGYRKVQQVIENHILK-LFQSNLVPAD 170

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  122 bits (309), Expect = 5e-33
 Identities = 39/146 (26%), Positives = 63/146 (43%), Gaps = 7/146 (4%)

Query: 98  NATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSK--D 155
           ++  +   A +G    + E L K   L+      G   L +A+  G ++ V+ LL    D
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD 61

Query: 156 PQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEI 215
           P       K+ ++AL +A  G   ++V LLLE D  I +  D  G T L  A R    + 
Sbjct: 62  PH---ILAKERESALSLASTGGYTDIVGLLLERDVDINI-YDWNGGTPLLYAVRGNHVKC 117

Query: 216 VTELLSLPDTNVNALTRDHKTALDIA 241
           V  LL+    ++        T +D+A
Sbjct: 118 VEALLAR-GADLTTEADSGYTPMDLA 142

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  116 bits (294), Expect = 7e-31
 Identities = 38/155 (24%), Positives = 62/155 (40%), Gaps = 21/155 (13%)

Query: 22  VNEVNELGETALFTAADKGHIEVVNELLKYSTKEG--LTRKNRSGFDPLHIAAVQGHHAI 79
           VN+ +E G T L  A+  G IE V  LL++    G       +     L +A+  G+  I
Sbjct: 29  VNKPDERGFTPLIWASAFGEIETVRFLLEW----GADPHILAKERESALSLASTGGYTDI 84

Query: 80  VQVLLDHDPSLSQTTGPSNA------TPLVSAATRGHTAVVNELLSKDGGLLEISRSNGK 133
           V +LL+ D  +       N       TPL+ A    H   V  LL++ G  L     +G 
Sbjct: 85  VGLLLERDVDI-------NIYDWNGGTPLLYAVRGNHVKCVEALLAR-GADLTTEADSGY 136

Query: 134 NALHFAARQGHVDVVKALLSKDPQLARRTDKKGQT 168
             +  A   G+  V + + +   +L +  +     
Sbjct: 137 TPMDLAVALGYRKVQQVIENHILKLFQS-NLVPAD 170

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  135 bits (342), Expect = 1e-37
 Identities = 47/206 (22%), Positives = 79/206 (38%), Gaps = 26/206 (12%)

Query: 23  NEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQV 82
           + +++ GE       +K   + ++ L  Y      T        PL +A + G    +  
Sbjct: 2   SHMDKNGEIVEKIKDEKSINQNLDFLRNYRDSYNRT--------PLMVACMLGMENAIDK 53

Query: 83  LLDHDPSLSQTTGPSNA------TPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNAL 136
           L+++   L               T L+ A       +  +LLSK G  +     +GK  L
Sbjct: 54  LVENFDKL-------EDKDIEGSTALIWAVKNNRLGIAEKLLSK-GSNVNTKDFSGKTPL 105

Query: 137 HFAARQGHVDVVKALLSKDPQL-ARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVML 195
            ++   G+ ++   LL     +  R  + +G+T L +A K    E+VK LLE  A I   
Sbjct: 106 MWSIIFGYSEMSYFLLEHGANVNDR--NLEGETPLIVASKYGRSEIVKKLLELGADI-SA 162

Query: 196 PDKFGNTALHVATRKKRTEIVTELLS 221
            D  G TA   A    R E++     
Sbjct: 163 RDLTGLTAEASARIFGRQEVIKIFTE 188

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  117 bits (297), Expect = 4e-31
 Identities = 42/188 (22%), Positives = 69/188 (36%), Gaps = 26/188 (13%)

Query: 13  EVAEIRSSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEG--LTRKNRSGFDPLHI 70
           +  +    + N  +    T L  A   G    +++L++        L  K+  G   L  
Sbjct: 22  QNLDF---LRNYRDSYNRTPLMVACMLGMENAIDKLVEN----FDKLEDKDIEGSTALIW 74

Query: 71  AAVQGHHAIVQVLLDHDPSLSQTTGPSNA------TPLVSAATRGHTAVVNELLSKDGGL 124
           A       I + LL    ++       N       TPL+ +   G++ +   LL   G  
Sbjct: 75  AVKNNRLGIAEKLLSKGSNV-------NTKDFSGKTPLMWSIIFGYSEMSYFLLEH-GAN 126

Query: 125 LEISRSNGKNALHFAARQGHVDVVKALLSKDPQL-ARRTDKKGQTALHMAVKGQSCEVVK 183
           +      G+  L  A++ G  ++VK LL     + AR  D  G TA   A      EV+K
Sbjct: 127 VNDRNLEGETPLIVASKYGRSEIVKKLLELGADISAR--DLTGLTAEASARIFGRQEVIK 184

Query: 184 LLLEADAA 191
           +  E   A
Sbjct: 185 IFTEVRRA 192

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  134 bits (340), Expect = 2e-37
 Identities = 42/167 (25%), Positives = 70/167 (41%), Gaps = 5/167 (2%)

Query: 67  PLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLE 126
            +H  A QG    +   ++ +  ++ T      TPL+ AA  G  AVV  LL   G   +
Sbjct: 6   SVHQLAAQGEMLYLATRIEQENVINHTDE-EGFTPLMWAAAHGQIAVVEFLLQN-GADPQ 63

Query: 127 ISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLL 186
           +     ++AL  A  +G+ D+VK LL     +    D  G T L  AV G   + VK+LL
Sbjct: 64  LLGKGRESALSLACSKGYTDIVKMLLDCGVDV-NEYDWNGGTPLLYAVHGNHVKCVKMLL 122

Query: 187 EADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRD 233
           E+ A    +    G  ++ +A       +   + S     +    ++
Sbjct: 123 ESGADP-TIETDSGYNSMDLAVALGYRSVQQVIESH-LLKLLQNIKE 167

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  131 bits (333), Expect = 2e-36
 Identities = 40/168 (23%), Positives = 67/168 (39%), Gaps = 13/168 (7%)

Query: 29  GETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDH-- 86
              ++   A +G +  +   ++      +   +  GF PL  AA  G  A+V+ LL +  
Sbjct: 3   NSLSVHQLAAQGEMLYLATRIEQENV--INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGA 60

Query: 87  DPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVD 146
           DP L         + L  A ++G+T +V  LL   G  +     NG   L +A    HV 
Sbjct: 61  DPQLLGKGR---ESALSLACSKGYTDIVKMLLDC-GVDVNEYDWNGGTPLLYAVHGNHVK 116

Query: 147 VVKALLSK--DPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAI 192
            VK LL    DP +       G  ++ +AV      V +++      +
Sbjct: 117 CVKMLLESGADPTIE---TDSGYNSMDLAVALGYRSVQQVIESHLLKL 161

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  119 bits (300), Expect = 7e-32
 Identities = 35/147 (23%), Positives = 61/147 (41%), Gaps = 8/147 (5%)

Query: 97  SNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSK-- 154
           +N+  +   A +G    +   + +   ++  +   G   L +AA  G + VV+ LL    
Sbjct: 2   ANSLSVHQLAAQGEMLYLATRIEQ-ENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGA 60

Query: 155 DPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTE 214
           DPQL     K  ++AL +A      ++VK+LL+    +    D  G T L  A      +
Sbjct: 61  DPQLL---GKGRESALSLACSKGYTDIVKMLLDCGVDVNE-YDWNGGTPLLYAVHGNHVK 116

Query: 215 IVTELLSLPDTNVNALTRDHKTALDIA 241
            V  LL     +    T     ++D+A
Sbjct: 117 CVKMLLES-GADPTIETDSGYNSMDLA 142

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  136 bits (344), Expect = 3e-37
 Identities = 41/232 (17%), Positives = 75/232 (32%), Gaps = 24/232 (10%)

Query: 12  TEVAEIRSSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEG--LTRKNRSGFDPLH 69
           +      S +  +V    ET  +TAA K   + +++LL     E   +   + +G   L 
Sbjct: 28  SPSWVPSSYIAADVVSEYETPWWTAARKADEQALSQLL-----EDRDVDAVDENGRTALL 82

Query: 70  IAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISR 129
             A  G    V++L +    L         T L  AA      VV  L+   G  +E+  
Sbjct: 83  FVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVEL-GADIEVED 141

Query: 130 SNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEAD 189
             G  AL  A            +       RR   +    +      +  EV +++ +  
Sbjct: 142 ERGLTALELAREILKTTPKGNPMQF----GRRIGLEKVINVLEGQVFEYAEVDEIVEK-- 195

Query: 190 AAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 241
                     G    ++   K   +    +  +      A  +D++  L+ A
Sbjct: 196 -------RGKGKDVEYLVRWKDGGDCE-WVKGVHVAEDVA--KDYEDGLEYA 237

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  121 bits (306), Expect = 7e-32
 Identities = 45/227 (19%), Positives = 66/227 (29%), Gaps = 46/227 (20%)

Query: 13  EVAEIRSSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAA 72
           EV +I   + +     G          GH          +              P   AA
Sbjct: 2   EVNKI---IGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAAD-----VVSEYETPWWTAA 53

Query: 73  VQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNG 132
            +     +  LL                             V+     D         NG
Sbjct: 54  RKADEQALSQLL-------------------------EDRDVDA---VD--------ENG 77

Query: 133 KNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAI 192
           + AL F A  G    V+ L      L  R  + G TALHMA      EVV+ L+E  A I
Sbjct: 78  RTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADI 137

Query: 193 VMLPDKFGNTALHVATRKKRTEIVTELLSL-PDTNVNALTRDHKTAL 238
             + D+ G TAL +A    +T      +       +  +    +  +
Sbjct: 138 -EVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQV 183

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 88.8 bits (221), Expect = 3e-20
 Identities = 26/157 (16%), Positives = 46/157 (29%), Gaps = 23/157 (14%)

Query: 22  VNEVN-ELGETALFTAADKGHIEVVNELLKYSTKEG--LTRKNRSGFDPLHIAAVQGHHA 78
           ++  +   G TAL  AA     EVV  L++     G  +  ++  G   L +A       
Sbjct: 103 LDHRDMRGGLTALHMAAGYVRPEVVEALVEL----GADIEVEDERGLTALELAREILKTT 158

Query: 79  IVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHF 138
                +     +    G      ++      +  V   ++ K G         GK+  + 
Sbjct: 159 PKGNPMQFGRRI----GLEKVINVLEGQVFEYAEVDE-IVEKRG--------KGKDVEYL 205

Query: 139 AARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVK 175
              +   D            A    K  +  L  AV 
Sbjct: 206 VRWKDGGDCEWVKGVHV---AEDVAKDYEDGLEYAVA 239

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 65.3 bits (160), Expect = 3e-12
 Identities = 11/124 (8%), Positives = 31/124 (25%), Gaps = 17/124 (13%)

Query: 22  VNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQ 81
           +   +E G TAL  A +          +++       R        +    V  +  + +
Sbjct: 137 IEVEDERGLTALELAREILKTTPKGNPMQFGR-----RIGLEKVINVLEGQVFEYAEVDE 191

Query: 82  VLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAAR 141
           ++                        +        +        E    + ++ L +A  
Sbjct: 192 IVEKRG---------KGKDVEYLVRWKDGGDCE-WVKGVHVA--EDVAKDYEDGLEYAVA 239

Query: 142 QGHV 145
           +  +
Sbjct: 240 ESVI 243

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 47.2 bits (113), Expect = 4e-06
 Identities = 14/90 (15%), Positives = 27/90 (30%), Gaps = 20/90 (22%)

Query: 166 GQTALHMAVKGQS--------------CEVVKLLLEADAAIVMLPDKFGNTALHVATRKK 211
           G+    +  +                            A +         T    A RK 
Sbjct: 1   GEVNKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADV----VSEYETPWWTAARKA 56

Query: 212 RTEIVTELLSLPDTNVNALTRDHKTALDIA 241
             + +++LL   D +V+A+  + +TAL   
Sbjct: 57  DEQALSQLLE--DRDVDAVDENGRTALLFV 84

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score =  131 bits (330), Expect = 3e-35
 Identities = 50/255 (19%), Positives = 74/255 (29%), Gaps = 50/255 (19%)

Query: 29  GETALFTAADKGHIEVVNELLKYSTKEG------LTRKNRSGFDPLHIAAV---QGHHAI 79
               LF+   +G  E +  LL+Y              +  +G   L  A +    G +A 
Sbjct: 2   DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNAC 61

Query: 80  VQVLLDHDPSLSQTTGPSNA----------TPLVSAATRGHTAVVNELLS-------KDG 122
           +  LL  D          NA          + L  A  +     V  L+        +  
Sbjct: 62  IMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRAC 121

Query: 123 GLL-----EISRSNGKNALHFAARQGHVDVVKALLSKDPQLA--RRTDKKGQTALHMAVK 175
           G             G+  L  AA     DVV  LL    Q A    TD  G T LH  V 
Sbjct: 122 GRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVM 181

Query: 176 GQ----------------SCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTEL 219
                               ++   L         + +  G T L +A ++ + EI   +
Sbjct: 182 IADNSPENSALVIHMYDGLLQMGARLCPTVQL-EEISNHQGLTPLKLAAKEGKIEIFRHI 240

Query: 220 LSLPDTNVNALTRDH 234
           L    +   A    H
Sbjct: 241 LQREFSGAAAHHHHH 255

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score =  112 bits (281), Expect = 2e-28
 Identities = 43/226 (19%), Positives = 65/226 (28%), Gaps = 51/226 (22%)

Query: 22  VNEVNELGETALFTAA---DKGHIEVVNELLKYSTKEG---------LTRKNRSGFDPLH 69
                  G+T L  A      G    +  LL+     G          T +   G   LH
Sbjct: 36  AYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALH 95

Query: 70  IAAVQGHHAIVQVLLDH------------DPSLSQTTGPSNATPLVSAATRGHTAVVNEL 117
           IA  +     V++L+++                  T       PL  AA      VV  L
Sbjct: 96  IAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYL 155

Query: 118 LSKDGGL--LEISRSNGKNALHF----------------AARQGHVDVVKALLSKDPQLA 159
           L        LE + S G   LH                     G + +   L        
Sbjct: 156 LENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEE 215

Query: 160 RRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALH 205
              + +G T L +A K    E+ + +L+ + +        G  A H
Sbjct: 216 IS-NHQGLTPLKLAAKEGKIEIFRHILQREFS--------GAAAHH 252

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 92.9 bits (231), Expect = 2e-21
 Identities = 34/196 (17%), Positives = 64/196 (32%), Gaps = 38/196 (19%)

Query: 5   LSGAEFDTEVAEIRSSVVNEVNELGETALFTAADKGHIEVVNELLKY-----------ST 53
           L   +       + ++   +    G +AL  A +K  ++ V  L++              
Sbjct: 66  LQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFF 125

Query: 54  KEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDH-----DPSLSQTTG------------- 95
           ++        G  PL +AA      +V  LL++         + + G             
Sbjct: 126 QKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADN 185

Query: 96  PSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKD 155
               + LV     G   +   L      L EIS   G   L  AA++G +++ + +L + 
Sbjct: 186 SPENSALVIHMYDGLLQMGARLCPT-VQLEEISNHQGLTPLKLAAKEGKIEIFRHILQR- 243

Query: 156 PQLARRTDKKGQTALH 171
                  +  G  A H
Sbjct: 244 -------EFSGAAAHH 252

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  128 bits (324), Expect = 4e-35
 Identities = 43/203 (21%), Positives = 72/203 (35%), Gaps = 43/203 (21%)

Query: 29  GETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDP 88
               +FT   +G+   V   L  +T+  L + +  GF PLH A  +G  A+V++L+    
Sbjct: 5   FMDDIFTQCREGNAVAVRLWLD-NTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRG- 62

Query: 89  SLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVV 148
                                  A +N     +              LH AA  GH D+V
Sbjct: 63  -----------------------ARINV---MN--------RGDDTPLHLAASHGHRDIV 88

Query: 149 KALLSK--DPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHV 206
           + LL    D       ++ G   LH A      +V + L+   A +  + +K+G   +  
Sbjct: 89  QKLLQYKADIN---AVNEHGNVPLHYACFWGQDQVAEDLVANGALV-SICNKYGEMPVDK 144

Query: 207 ATRKKRTEIVTELLSLPDTNVNA 229
           A    R  +      +   N+N 
Sbjct: 145 AKAPLRELLRERAEKM-GQNLNR 166

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  117 bits (297), Expect = 3e-31
 Identities = 34/165 (20%), Positives = 68/165 (41%), Gaps = 11/165 (6%)

Query: 100 TPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLA 159
             + +    G+   V   L      L     +G + LH+A R+G   VV+ L+ +    A
Sbjct: 7   DDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRG---A 63

Query: 160 R--RTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVT 217
           R    ++   T LH+A      ++V+ LL+  A I    ++ GN  LH A    + ++  
Sbjct: 64  RINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINA-VNEHGNVPLHYACFWGQDQVAE 122

Query: 218 ELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGA 262
           +L++     V+   +  +  +D A     +     +++   + G 
Sbjct: 123 DLVAN-GALVSICNKYGEMPVDKA----KAPLRELLRERAEKMGQ 162

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 98.3 bits (246), Expect = 3e-24
 Identities = 26/111 (23%), Positives = 47/111 (42%), Gaps = 2/111 (1%)

Query: 131 NGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADA 190
              + +    R+G+   V+  L        + D  G + LH A +     VV++L+   A
Sbjct: 4   EFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGA 63

Query: 191 AIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 241
            I  + ++  +T LH+A      +IV +LL     ++NA+       L  A
Sbjct: 64  RI-NVMNRGDDTPLHLAASHGHRDIVQKLLQY-KADINAVNEHGNVPLHYA 112

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 73.6 bits (182), Expect = 2e-15
 Identities = 20/92 (21%), Positives = 32/92 (34%), Gaps = 13/92 (14%)

Query: 22  VNEVNELGETALFTAADKGHIEVVNELLKYSTKEG--LTRKNRSGFDPLHIAAVQGHHAI 79
           +N VNE G   L  A   G  +V  +L+      G  ++  N+ G  P+  A       +
Sbjct: 98  INAVNEHGNVPLHYACFWGQDQVAEDLVAN----GALVSICNKYGEMPVDKAKAPLRELL 153

Query: 80  VQVLLDHDPSLSQTTGPSNATPLVSAATRGHT 111
            +       +L       N  P      +G T
Sbjct: 154 RERAEKMGQNL-------NRIPYKDTFWKGTT 178

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 69.8 bits (172), Expect = 3e-14
 Identities = 17/79 (21%), Positives = 32/79 (40%), Gaps = 1/79 (1%)

Query: 163 DKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSL 222
             +    +    +  +   V+L L+     +   D  G + LH A R+ R+ +V  L+  
Sbjct: 2   SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMR 61

Query: 223 PDTNVNALTRDHKTALDIA 241
               +N + R   T L +A
Sbjct: 62  -GARINVMNRGDDTPLHLA 79

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  129 bits (327), Expect = 7e-35
 Identities = 42/221 (19%), Positives = 79/221 (35%), Gaps = 18/221 (8%)

Query: 29  GETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDH-- 86
           G+ +L         +  +E + +  +    + N      L  ++++G   +VQ ++    
Sbjct: 5   GQVSLPPGKRTNLRKTGSERIAHGMR---VKFNPLPLALLLDSSLEGEFDLVQRIIYEVD 61

Query: 87  DPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVD 146
           DPSL    G    T L +A   GHT +V  L+   G  +  + S+G   LH AA   +V 
Sbjct: 62  DPSLPNDEG---ITALHNAVCAGHTEIVKFLVQF-GVNVNAADSDGWTPLHCAASCNNVQ 117

Query: 147 VVKALLSKDPQLARRT--DKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTAL 204
           V K L+     +   T  D +        ++    +  + L      +  + +K    AL
Sbjct: 118 VCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKM-GIMNKGVIYAL 176

Query: 205 HVATRKKRTEIVTELLSLPDTNVNALTRDH--KTALDIAEG 243
                +       EL       +  + R+   +     A  
Sbjct: 177 WDYEPQN----DDELPMKEGDCMTIIHREDEDEIEWWWARL 213

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  125 bits (317), Expect = 2e-33
 Identities = 35/182 (19%), Positives = 62/182 (34%), Gaps = 7/182 (3%)

Query: 63  SGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDG 122
           +G   L               + H   +     P     L+ ++  G   +V  ++ +  
Sbjct: 4   TGQVSLPPGKRTNLRKTGSERIAHGMRVKFN--PLPLALLLDSSLEGEFDLVQRIIYE-V 60

Query: 123 GLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVV 182
               +    G  ALH A   GH ++VK L+     +    D  G T LH A    + +V 
Sbjct: 61  DDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNV-NAADSDGWTPLHCAASCNNVQVC 119

Query: 183 KLLLEADAAI--VMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDI 240
           K L+E+ AA+  +   D            +  T+    L  +    +  + +    AL  
Sbjct: 120 KFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGV-QEKMGIMNKGVIYALWD 178

Query: 241 AE 242
            E
Sbjct: 179 YE 180

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 94.2 bits (235), Expect = 3e-22
 Identities = 29/159 (18%), Positives = 52/159 (32%), Gaps = 11/159 (6%)

Query: 22  VNEVNELGETALFTAADKGHIEVVNELLKYSTKEG--LTRKNRSGFDPLHIAAVQGHHAI 79
            +  N+ G TAL  A   GH E+V  L+++    G  +   +  G+ PLH AA   +  +
Sbjct: 63  PSLPNDEGITALHNAVCAGHTEIVKFLVQF----GVNVNAADSDGWTPLHCAASCNNVQV 118

Query: 80  VQVLLDH--DPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALH 137
            + L++          +    A         G+T     L       + I       AL 
Sbjct: 119 CKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGV-QEKMGIMNKGVIYALW 177

Query: 138 FAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKG 176
               Q   ++   +   D       + + +     A   
Sbjct: 178 DYEPQNDDEL--PMKEGDCMTIIHREDEDEIEWWWARLN 214

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 62.6 bits (153), Expect = 3e-11
 Identities = 9/79 (11%), Positives = 26/79 (32%), Gaps = 3/79 (3%)

Query: 163 DKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSL 222
           +  GQ +L    +    +     +     +    +      L  ++ +   ++V  ++  
Sbjct: 2   EITGQVSLPPGKRTNLRKTGSERIAHGMRVKF--NPLPLALLLDSSLEGEFDLVQRIIYE 59

Query: 223 PDTNVNALTRDHKTALDIA 241
              + +    +  TAL  A
Sbjct: 60  -VDDPSLPNDEGITALHNA 77

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 43.8 bits (104), Expect = 6e-05
 Identities = 7/46 (15%), Positives = 14/46 (30%), Gaps = 2/46 (4%)

Query: 196 PDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 241
           P+  G  +L    R    +  +E ++     V          L  +
Sbjct: 1   PEITGQVSLPPGKRTNLRKTGSERIAH-GMRVKF-NPLPLALLLDS 44

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score =  128 bits (323), Expect = 4e-34
 Identities = 44/268 (16%), Positives = 82/268 (30%), Gaps = 57/268 (21%)

Query: 23  NEVNELGETALFTAADKGHIEVVNELLKYSTKEG------LTRKNRSGFDPLHIAAV--- 73
                    ++F A  + + + +  LL +  +          +   +G   L  A +   
Sbjct: 7   KPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLH 66

Query: 74  QGHHAIVQVLLDHDPSLSQTTGPSNA----------TPLVSAATRGHTAVVNELLSK--- 120
            G +  + +LLD            NA          T L  A  R +  +V  L+     
Sbjct: 67  NGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGAD 126

Query: 121 -----DGGLLEISRSN-----GKNALHFAARQGHVDVVKALLSKDPQLA--RRTDKKGQT 168
                +G   + ++       G+  L  AA    + +VK LL    Q A     D  G T
Sbjct: 127 VQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNT 186

Query: 169 ALHMAVKGQ---------SCEVVKLLLEADA------AIVMLPDKFGNTALHVATRKKRT 213
            LH  V+              +   +L   A       +  + ++ G T L +A    + 
Sbjct: 187 VLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKI 246

Query: 214 EIVTELLSLPDTNVNALTRDHKTALDIA 241
            ++  +L   + +              A
Sbjct: 247 GVLAYILQR-EIHEP-------ECRHAA 266

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score =  116 bits (293), Expect = 6e-30
 Identities = 45/227 (19%), Positives = 67/227 (29%), Gaps = 50/227 (22%)

Query: 26  NELGETALFTA---ADKGHIEVVNELL---------KYSTKEGLTRKNRSGFDPLHIAAV 73
            E G+T L  A      G  + +  LL         K       T     G   LHIA  
Sbjct: 51  PETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIE 110

Query: 74  QGHHAIVQVLLDH-------------DPSLSQTTGPSNATPLVSAATRGHTAVVNELLSK 120
           + +  +V +L+++               +  +        PL  AA     A+V  LL  
Sbjct: 111 RRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQN 170

Query: 121 DGGLLEISR--SNGKNALHFAARQGHVDVVK---------------ALLSKDPQLARRTD 163
                +IS   S G   LH         V                 A L    +L   T+
Sbjct: 171 SWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITN 230

Query: 164 KKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRK 210
           +KG T L +A       V+  +L+ +               H A   
Sbjct: 231 RKGLTPLALAASSGKIGVLAYILQREI--------HEPECRHAAAHH 269

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 86.8 bits (215), Expect = 2e-19
 Identities = 27/155 (17%), Positives = 47/155 (30%), Gaps = 28/155 (18%)

Query: 22  VNEVNELGETALFTAADKGHIEVVNELLKYSTKE-GLTRKNRSGFDPLHIAAVQGHHAIV 80
                  GE  L  AA    + +V  LL+ S +   ++ ++  G   LH       + + 
Sbjct: 141 GRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVD 200

Query: 81  QVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAA 140
                              T  V++       +  +L      L EI+   G   L  AA
Sbjct: 201 N------------------TKFVTSMYNEILILGAKLHPT-LKLEEITNRKGLTPLALAA 241

Query: 141 RQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVK 175
             G + V+  +L +        +       H A  
Sbjct: 242 SSGKIGVLAYILQR--------EIHEPECRHAAAH 268

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 59.0 bits (143), Expect = 6e-10
 Identities = 18/103 (17%), Positives = 29/103 (28%), Gaps = 22/103 (21%)

Query: 22  VNEVNELGETALFTAADKGHIEVVNELLKYSTKEGL--------------TRKNRSGFDP 67
           ++  + +G T L    +     V N     S    +                 NR G  P
Sbjct: 177 ISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTP 236

Query: 68  LHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGH 110
           L +AA  G   ++  +L                   +AA   H
Sbjct: 237 LALAASSGKIGVLAYILQR--------EIHEPECRHAAAHHHH 271

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 49.0 bits (117), Expect = 1e-06
 Identities = 15/58 (25%), Positives = 21/58 (36%), Gaps = 9/58 (15%)

Query: 20  SVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHH 77
            +    N  G T L  AA  G I V+  +L+         +     +  H AA   HH
Sbjct: 224 KLEEITNRKGLTPLALAASSGKIGVLAYILQ---------REIHEPECRHAAAHHHHH 272

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score =  127 bits (322), Expect = 6e-34
 Identities = 47/255 (18%), Positives = 74/255 (29%), Gaps = 49/255 (19%)

Query: 29  GETALFTAADKGHIEVVNELLKYSTKEG------LTRKNRSGFDPLHIAAVQ---GHHAI 79
               LF    +G  + +  LL +             R+  +G   L  A +    G +  
Sbjct: 5   NRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDT 64

Query: 80  VQVLLDHDPSLSQTTGPSNA----------TPLVSAATRGHTAVVNELLSK--------- 120
           + +LLD            N+          T L  A  R     V  L+ K         
Sbjct: 65  IPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQAR 124

Query: 121 ----DGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLA--RRTDKKGQTALHMAV 174
                          G+  L  AA      +V  L     + A  RR D +G T LH  V
Sbjct: 125 GRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALV 184

Query: 175 KGQS---------CEVVKLLLEADAAI------VMLPDKFGNTALHVATRKKRTEIVTEL 219
                         ++  LLL   A +        L +  G + L +A +  +  I   +
Sbjct: 185 AIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHI 244

Query: 220 LSLPDTNVNALTRDH 234
           +     +  A    H
Sbjct: 245 IRREIADAAAHHHHH 259

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 96.8 bits (241), Expect = 8e-23
 Identities = 39/210 (18%), Positives = 60/210 (28%), Gaps = 42/210 (20%)

Query: 26  NELGETALFTAA---DKGHIEVVNELLKYSTKEGLTR---------KNRSGFDPLHIAAV 73
              G+T L  A      G  + +  LL  + K G  R             G   LHIA  
Sbjct: 43  PSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIE 102

Query: 74  QGHHAIVQVLLDH-------------DPSLSQTTGPSNATPLVSAATRGHTAVVNELLSK 120
           +     V++L++               P            PL  AA      +V+ L   
Sbjct: 103 RRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTEN 162

Query: 121 DGGLLEISR--SNGKNALHFAARQGH---------VDVVKALLSKD------PQLARRTD 163
                ++ R  S G   LH                  +   LL K         L    +
Sbjct: 163 GHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLN 222

Query: 164 KKGQTALHMAVKGQSCEVVKLLLEADAAIV 193
             G + L MA K     + + ++  + A  
Sbjct: 223 NDGLSPLMMAAKTGKIGIFQHIIRREIADA 252

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  123 bits (311), Expect = 2e-33
 Identities = 46/201 (22%), Positives = 75/201 (37%), Gaps = 47/201 (23%)

Query: 25  VNELGETALFTAADKGHIEVVNELLKYSTKEG--LTRKNRSGFDPLHIAAVQGHHAIVQV 82
           + E     L +AA +G +E +  LL+        +  +N  G   L +    G+  I + 
Sbjct: 1   MAEPWGNELASAAARGDLEQLTSLLQN----NVNVNAQNGFGRTALQVMK-LGNPEIARR 55

Query: 83  LLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQ 142
           LL                           A  +    KD          G   +H AAR 
Sbjct: 56  LLLRG------------------------ANPDL---KD--------RTGFAVIHDAARA 80

Query: 143 GHVDVVKALLSKDPQLAR--RTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFG 200
           G +D ++ LL      A     D +G   LH+A K     VV+ L++  A+ V   +  G
Sbjct: 81  GFLDTLQTLLEFQ---ADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKG 137

Query: 201 NTALHVATRKKRTEIVTELLS 221
           +TA  +A    R E+V+ + +
Sbjct: 138 DTACDLARLYGRNEVVSLMQA 158

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  106 bits (268), Expect = 2e-27
 Identities = 36/142 (25%), Positives = 60/142 (42%), Gaps = 4/142 (2%)

Query: 100 TPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLA 159
             L SAA RG    +  LL      +      G+ AL      G+ ++ + LL +     
Sbjct: 7   NELASAAARGDLEQLTSLLQN-NVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGANPD 64

Query: 160 RRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTEL 219
            + D+ G   +H A +    + ++ LLE  A +  + D  GN  LH+A ++    +V  L
Sbjct: 65  LK-DRTGFAVIHDAARAGFLDTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFL 122

Query: 220 LSLPDTNVNALTRDHKTALDIA 241
           +    +NV        TA D+A
Sbjct: 123 VKHTASNVGHRNHKGDTACDLA 144

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  123 bits (312), Expect = 2e-33
 Identities = 43/206 (20%), Positives = 60/206 (29%), Gaps = 42/206 (20%)

Query: 16  EIRSSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQG 75
           E+   + +     G          GH          +              P   AA + 
Sbjct: 1   EVNKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAAD-----VVSEYETPWWTAARKA 55

Query: 76  HHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNA 135
               +  LL                             V+     D         NG+ A
Sbjct: 56  DEQALSQLL-------------------------EDRDVDA---VD--------ENGRTA 79

Query: 136 LHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVML 195
           L F A  G    V+ L      L  R  + G TALHMA      EVV+ L+E  A I  +
Sbjct: 80  LLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADI-EV 138

Query: 196 PDKFGNTALHVATRKKRTEIVTELLS 221
            D+ G TAL +A    +T      + 
Sbjct: 139 EDERGLTALELAREILKTTPKGNPMQ 164

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  107 bits (270), Expect = 2e-27
 Identities = 37/145 (25%), Positives = 57/145 (39%), Gaps = 9/145 (6%)

Query: 98  NATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSK-DP 156
            A   +     GH+              ++  S  +     AAR+     +  LL   D 
Sbjct: 14  GAMEYLIEWKDGHSPSWVPSSYIAA---DVV-SEYETPWWTAARKADEQALSQLLEDRDV 69

Query: 157 QLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIV 216
                 D+ G+TAL       S + V+LL EA A +     + G TALH+A    R E+V
Sbjct: 70  D---AVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVV 126

Query: 217 TELLSLPDTNVNALTRDHKTALDIA 241
             L+ L   ++        TAL++A
Sbjct: 127 EALVEL-GADIEVEDERGLTALELA 150

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  106 bits (268), Expect = 3e-27
 Identities = 37/185 (20%), Positives = 65/185 (35%), Gaps = 46/185 (24%)

Query: 12  TEVAEIRSSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEG--LTRKNRSGFDPLH 69
           +      S +  +V    ET  +TAA K   + +++LL     E   +   + +G   L 
Sbjct: 27  SPSWVPSSYIAADVVSEYETPWWTAARKADEQALSQLL-----EDRDVDAVDENGRTALL 81

Query: 70  IAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISR 129
             A  G    V++L +                          A ++    +D        
Sbjct: 82  FVAGLGSDKCVRLLAEAG------------------------ADLDH---RD-------M 107

Query: 130 SNGKNALHFAARQGHVDVVKALLSK--DPQLARRTDKKGQTALHMAVKGQSCEVVKLLLE 187
             G  ALH AA     +VV+AL+    D ++    D++G TAL +A +          ++
Sbjct: 108 RGGLTALHMAAGYVRPEVVEALVELGADIEVE---DERGLTALELAREILKTTPKGNPMQ 164

Query: 188 ADAAI 192
               I
Sbjct: 165 FGRRI 169

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  122 bits (308), Expect = 6e-33
 Identities = 53/197 (26%), Positives = 77/197 (39%), Gaps = 47/197 (23%)

Query: 29  GETALFTAADKGHIEVVNELLKYSTKEG--LTRKNRSGFDPLHIAAVQGHHAIVQVLLDH 86
               L  AA  G  + V  L+      G  +  ++ SG+ PLH+AA  GH  IV+VLL +
Sbjct: 14  LGKKLLEAARAGRDDEVRILMAN----GADVNAEDASGWTPLHLAAFNGHLEIVEVLLKN 69

Query: 87  DPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVD 146
                                    A VN     D          G   L  AA  GH++
Sbjct: 70  G------------------------ADVNA---VD--------HAGMTPLRLAALFGHLE 94

Query: 147 VVKALLSK--DPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTAL 204
           +V+ LL    D       D +G T LH+A      E+V++LL+  A +    DKFG TA 
Sbjct: 95  IVEVLLKNGADVN---ANDMEGHTPLHLAAMFGHLEIVEVLLKNGADV-NAQDKFGKTAF 150

Query: 205 HVATRKKRTEIVTELLS 221
            ++      ++   L  
Sbjct: 151 DISIDNGNEDLAEILQK 167

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  109 bits (275), Expect = 2e-28
 Identities = 46/142 (32%), Positives = 68/142 (47%), Gaps = 4/142 (2%)

Query: 100 TPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLA 159
             L+ AA  G    V  L++  G  +    ++G   LH AA  GH+++V+ LL     + 
Sbjct: 16  KKLLEAARAGRDDEVRILMAN-GADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVN 74

Query: 160 RRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTEL 219
              D  G T L +A      E+V++LL+  A +    D  G+T LH+A      EIV  L
Sbjct: 75  AV-DHAGMTPLRLAALFGHLEIVEVLLKNGADVNA-NDMEGHTPLHLAAMFGHLEIVEVL 132

Query: 220 LSLPDTNVNALTRDHKTALDIA 241
           L     +VNA  +  KTA DI+
Sbjct: 133 LKN-GADVNAQDKFGKTAFDIS 153

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  104 bits (262), Expect = 2e-26
 Identities = 45/136 (33%), Positives = 64/136 (47%), Gaps = 8/136 (5%)

Query: 22  VNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQ 81
           VN  +  G T L  AA  GH+E+V  LLK      +   + +G  PL +AA+ GH  IV+
Sbjct: 40  VNAEDASGWTPLHLAAFNGHLEIVEVLLKNGAD--VNAVDHAGMTPLRLAALFGHLEIVE 97

Query: 82  VLLDH--DPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFA 139
           VLL +  D + +   G    TPL  AA  GH  +V  LL   G  +      GK A   +
Sbjct: 98  VLLKNGADVNANDMEG---HTPLHLAAMFGHLEIVEVLLKN-GADVNAQDKFGKTAFDIS 153

Query: 140 ARQGHVDVVKALLSKD 155
              G+ D+ + L   +
Sbjct: 154 IDNGNEDLAEILQKLN 169

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 92.4 bits (231), Expect = 3e-22
 Identities = 36/112 (32%), Positives = 51/112 (45%), Gaps = 3/112 (2%)

Query: 130 SNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEAD 189
           S+    L  AAR G  D V+ L++    +    D  G T LH+A      E+V++LL+  
Sbjct: 12  SDLGKKLLEAARAGRDDEVRILMANGADVNAE-DASGWTPLHLAAFNGHLEIVEVLLKNG 70

Query: 190 AAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 241
           A +    D  G T L +A      EIV  LL     +VNA   +  T L +A
Sbjct: 71  ADV-NAVDHAGMTPLRLAALFGHLEIVEVLLKN-GADVNANDMEGHTPLHLA 120

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 60.8 bits (149), Expect = 4e-11
 Identities = 22/79 (27%), Positives = 32/79 (40%), Gaps = 2/79 (2%)

Query: 163 DKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSL 222
                  L  A +    + V++L+   A +    D  G T LH+A      EIV  LL  
Sbjct: 11  GSDLGKKLLEAARAGRDDEVRILMANGADV-NAEDASGWTPLHLAAFNGHLEIVEVLLKN 69

Query: 223 PDTNVNALTRDHKTALDIA 241
              +VNA+     T L +A
Sbjct: 70  -GADVNAVDHAGMTPLRLA 87

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  121 bits (306), Expect = 8e-33
 Identities = 45/196 (22%), Positives = 69/196 (35%), Gaps = 46/196 (23%)

Query: 29  GETALFTAADKGHIEVVNELLKYSTKEG--LTRKNRSGFDPLHIAAVQGHHAIVQVLLDH 86
               L  AA +G ++ V  LL    +E       NR G   L +    G  AI   LL  
Sbjct: 2   AGDRLSGAAARGDVQEVRRLL---HRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQ 57

Query: 87  DPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVD 146
                                    A  N    +D        ++G + +H AAR G +D
Sbjct: 58  G------------------------ASPNV---QD--------TSGTSPVHDAARTGFLD 82

Query: 147 VVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLE-ADAAIVMLPDKFGNTALH 205
            +K L+     +    D  G   +H+AV+     VV  L   +D   +   D  G T L 
Sbjct: 83  TLKVLVEHGADV-NVPDGTGALPIHLAVQEGHTAVVSFLAAESD---LHRRDARGLTPLE 138

Query: 206 VATRKKRTEIVTELLS 221
           +A ++   ++V  L  
Sbjct: 139 LALQRGAQDLVDILQG 154

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  114 bits (288), Expect = 3e-30
 Identities = 35/144 (24%), Positives = 64/144 (44%), Gaps = 9/144 (6%)

Query: 100 TPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSK--DPQ 157
             L  AA RG    V  LL ++    +     GK AL      G   +   LL +   P 
Sbjct: 4   DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALELLKQGASPN 62

Query: 158 LARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVT 217
           +    D  G + +H A +    + +K+L+E  A +  +PD  G   +H+A ++  T +V+
Sbjct: 63  VQ---DTSGTSPVHDAARTGFLDTLKVLVEHGADV-NVPDGTGALPIHLAVQEGHTAVVS 118

Query: 218 ELLSLPDTNVNALTRDHKTALDIA 241
            L +  +++++       T L++A
Sbjct: 119 FLAA--ESDLHRRDARGLTPLELA 140

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 97.5 bits (244), Expect = 3e-24
 Identities = 42/136 (30%), Positives = 62/136 (45%), Gaps = 14/136 (10%)

Query: 22  VNEVNELGETALFTAADKGHIEVVNELLKYSTKEG--LTRKNRSGFDPLHIAAVQGHHAI 79
            + +N  G+TAL      G   +  ELLK     G     ++ SG  P+H AA  G    
Sbjct: 29  PDALNRFGKTALQVMM-FGSTAIALELLKQ----GASPNVQDTSGTSPVHDAARTGFLDT 83

Query: 80  VQVLLDH--DPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALH 137
           ++VL++H  D ++   TG   A P+  A   GHTAVV+ L +     L    + G   L 
Sbjct: 84  LKVLVEHGADVNVPDGTG---ALPIHLAVQEGHTAVVSFLAA--ESDLHRRDARGLTPLE 138

Query: 138 FAARQGHVDVVKALLS 153
            A ++G  D+V  L  
Sbjct: 139 LALQRGAQDLVDILQG 154

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 64.7 bits (159), Expect = 1e-12
 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 3/65 (4%)

Query: 22  VNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQ 81
           VN  +  G   +  A  +GH  VV+ L   S      R++  G  PL +A  +G   +V 
Sbjct: 94  VNVPDGTGALPIHLAVQEGHTAVVSFLAAESDLH---RRDARGLTPLELALQRGAQDLVD 150

Query: 82  VLLDH 86
           +L  H
Sbjct: 151 ILQGH 155

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 58.2 bits (142), Expect = 2e-10
 Identities = 18/77 (23%), Positives = 27/77 (35%), Gaps = 2/77 (2%)

Query: 165 KGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPD 224
           +    L  A      + V+ LL  +       ++FG TAL V      T I  ELL    
Sbjct: 1   RAGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALELLKQ-G 58

Query: 225 TNVNALTRDHKTALDIA 241
            + N       + +  A
Sbjct: 59  ASPNVQDTSGTSPVHDA 75

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  121 bits (305), Expect = 6e-32
 Identities = 41/212 (19%), Positives = 70/212 (33%), Gaps = 27/212 (12%)

Query: 22  VNEVNEL---GETALFTAADKGHIEVVNELLKY------STKEGLTRKNRSGFDPLHIAA 72
             +           L  AA  G +EVV + +K         +EG+T         LH A 
Sbjct: 11  PRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGIT--------ALHNAI 62

Query: 73  VQGHHAIVQVLLDH--DPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRS 130
              +++IV  L+    + +   + G    TPL  AA+   T +   L+     +   + S
Sbjct: 63  CGANYSIVDFLITAGANVNSPDSHG---WTPLHCAASCNDTVICMALVQHGAAIFATTLS 119

Query: 131 NGKNALHFAA--RQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEA 188
           +G  A       R+G+ D    L   +  +    +     AL         E+     E 
Sbjct: 120 DGATAFEKCDPYREGYADCATYLADVEQSM-GLMNSGAVYALWDYSAEFGDEL--SFREG 176

Query: 189 DAAIVMLPDKFGNTALHVATRKKRTEIVTELL 220
           ++  V+  D    T    A    +   V    
Sbjct: 177 ESVTVLRRDGPEETDWWWAALHGQEGYVPRNY 208

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  111 bits (281), Expect = 1e-28
 Identities = 43/191 (22%), Positives = 70/191 (36%), Gaps = 18/191 (9%)

Query: 60  KNRSGFDP---LHIAAVQGHHAIVQVLLDH--DPSLSQTTGPSNATPLVSAATRGHTAVV 114
             R+  +P   L  AA+ G   +VQ  +    DPS     G    T L +A    + ++V
Sbjct: 14  ARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEG---ITALHNAICGANYSIV 70

Query: 115 NELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAV 174
           + L++  G  +    S+G   LH AA      +  AL+     +   T   G TA     
Sbjct: 71  DFLITA-GANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCD 129

Query: 175 KGQSC--EVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTR 232
             +    +    L + + ++  L +     AL   +     E   EL      +V  L R
Sbjct: 130 PYREGYADCATYLADVEQSM-GLMNSGAVYALWDYSA----EFGDELSFREGESVTVLRR 184

Query: 233 DH--KTALDIA 241
           D   +T    A
Sbjct: 185 DGPEETDWWWA 195

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 63.4 bits (155), Expect = 1e-11
 Identities = 27/96 (28%), Positives = 40/96 (41%), Gaps = 4/96 (4%)

Query: 148 VKALLSK--DPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALH 205
           ++++L K   P+ ARR        L  A      EVV+  ++        P++ G TALH
Sbjct: 1   MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQ-PNEEGITALH 59

Query: 206 VATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 241
            A       IV  L++    NVN+      T L  A
Sbjct: 60  NAICGANYSIVDFLITA-GANVNSPDSHGWTPLHCA 94

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 50.7 bits (122), Expect = 2e-07
 Identities = 17/119 (14%), Positives = 32/119 (26%), Gaps = 7/119 (5%)

Query: 22  VNEVN-ELGETALFTAAD--KGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHA 78
           +       G TA        +G+ +    L     ++ +   N      L   +      
Sbjct: 113 IFATTLSDGATAFEKCDPYREGYADCATYLA--DVEQSMGLMNSGAVYALWDYS-AEFGD 169

Query: 79  IVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALH 137
            +        ++ +  G    T    AA  G    V          ++  RS  K+  H
Sbjct: 170 ELSFREGESVTVLRRDG-PEETDWWWAALHGQEGYVPRNYFGLFPRVKPQRSKVKHHHH 227

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  117 bits (296), Expect = 2e-31
 Identities = 45/194 (23%), Positives = 68/194 (35%), Gaps = 45/194 (23%)

Query: 29  GETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDP 88
               L  AA  G  + V  L+           +  G  PLH+AA  GH +  +VLL    
Sbjct: 2   LGKKLLEAARAGQDDEVRILMANGAPF---TTDWLGTSPLHLAAQYGHFSTTEVLLRAG- 57

Query: 89  SLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVV 148
                                     +    +            +  LH AA +GH ++V
Sbjct: 58  -----------------------VSRDA---RT--------KVDRTPLHMAASEGHANIV 83

Query: 149 KALLSK--DPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHV 206
           + LL    D       D    TALH A +    EVV+LL++  A +     KF  TA  +
Sbjct: 84  EVLLKHGADVN---AKDMLKMTALHWATEHNHQEVVELLIKYGADV-HTQSKFCKTAFDI 139

Query: 207 ATRKKRTEIVTELL 220
           +      ++  E+L
Sbjct: 140 SIDNGNEDLA-EIL 152

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  108 bits (272), Expect = 4e-28
 Identities = 43/148 (29%), Positives = 62/148 (41%), Gaps = 17/148 (11%)

Query: 100 TPLVSAATRGHTAVVNELLS------KDGGLLEISRSNGKNALHFAARQGHVDVVKALLS 153
             L+ AA  G    V  L++       D          G + LH AA+ GH    + LL 
Sbjct: 4   KKLLEAARAGQDDEVRILMANGAPFTTD--------WLGTSPLHLAAQYGHFSTTEVLLR 55

Query: 154 KDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRT 213
                  R  K  +T LHMA       +V++LL+  A +    D    TALH AT     
Sbjct: 56  AGVSRDAR-TKVDRTPLHMAASEGHANIVEVLLKHGADVNA-KDMLKMTALHWATEHNHQ 113

Query: 214 EIVTELLSLPDTNVNALTRDHKTALDIA 241
           E+V  L+     +V+  ++  KTA DI+
Sbjct: 114 EVVELLIKY-GADVHTQSKFCKTAFDIS 140

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 96.3 bits (241), Expect = 9e-24
 Identities = 40/162 (24%), Positives = 61/162 (37%), Gaps = 42/162 (25%)

Query: 26  NELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLD 85
           + LG + L  AA  GH      LL+         + +    PLH+AA +GH  IV+VLL 
Sbjct: 31  DWLGTSPLHLAAQYGHFSTTEVLLRAGVS--RDARTKVDRTPLHMAASEGHANIVEVLLK 88

Query: 86  HDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHV 145
           H                         A VN    KD             ALH+A    H 
Sbjct: 89  HG------------------------ADVNA---KD--------MLKMTALHWATEHNHQ 113

Query: 146 DVVKALLSK--DPQLARRTDKKGQTALHMAVKGQSCEVVKLL 185
           +VV+ L+    D        K  +TA  +++   + ++ ++L
Sbjct: 114 EVVELLIKYGADVH---TQSKFCKTAFDISIDNGNEDLAEIL 152

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 94.0 bits (235), Expect = 6e-23
 Identities = 33/111 (29%), Positives = 46/111 (41%), Gaps = 4/111 (3%)

Query: 131 NGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADA 190
           +    L  AAR G  D V+ L++        TD  G + LH+A +       ++LL A  
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGAPFT--TDWLGTSPLHLAAQYGHFSTTEVLLRAGV 58

Query: 191 AIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 241
           +      K   T LH+A  +    IV  LL     +VNA      TAL  A
Sbjct: 59  SR-DARTKVDRTPLHMAASEGHANIVEVLLKH-GADVNAKDMLKMTALHWA 107

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 74.3 bits (184), Expect = 5e-16
 Identities = 25/132 (18%), Positives = 44/132 (33%), Gaps = 41/132 (31%)

Query: 22  VNEVNELGETALFTAADKGHIEVVNELLKYSTKEG--LTRKNRSGFDPLHIAAVQGHHAI 79
            +   ++  T L  AA +GH  +V  LLK+    G  +  K+      LH A    H  +
Sbjct: 60  RDARTKVDRTPLHMAASEGHANIVEVLLKH----GADVNAKDMLKMTALHWATEHNHQEV 115

Query: 80  VQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFA 139
           V++L+ +                         A V+    +            K A   +
Sbjct: 116 VELLIKYG------------------------ADVHT---QS--------KFCKTAFDIS 140

Query: 140 ARQGHVDVVKAL 151
              G+ D+ + L
Sbjct: 141 IDNGNEDLAEIL 152

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  113 bits (286), Expect = 6e-30
 Identities = 48/199 (24%), Positives = 66/199 (33%), Gaps = 43/199 (21%)

Query: 25  VNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLL 84
            N   +  L  AA  G +E V +L    +             PLH AA     ++V+ LL
Sbjct: 4   GNSEADRQLLEAAKAGDVETVKKLCTVQSVN-CRDIEGRQSTPLHFAAGYNRVSVVEYLL 62

Query: 85  DHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGH 144
            H                         A V+    KD          G   LH A   GH
Sbjct: 63  QHG------------------------ADVHA---KD--------KGGLVPLHNACSYGH 87

Query: 145 VDVVKALLSKDPQLA--RRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNT 202
            +V + L+      A     D    T LH A      E+ KLLL+  A      ++ GNT
Sbjct: 88  YEVAELLVKHG---AVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADP-TKKNRDGNT 143

Query: 203 ALHVATRKKRTEIVTELLS 221
            L +  +   T+I   L  
Sbjct: 144 PLDLV-KDGDTDIQDLLRG 161

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  109 bits (275), Expect = 3e-28
 Identities = 49/206 (23%), Positives = 68/206 (33%), Gaps = 46/206 (22%)

Query: 60  KNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLS 119
            N      L  AA  G    V+ L                           +    +   
Sbjct: 4   GNSEADRQLLEAAKAGDVETVKKLCTV-----------------------QSVNCRD--- 37

Query: 120 KDGGLLEISRSNGKNALHFAARQGHVDVVKALLSK--DPQLARRTDKKGQTALHMAVKGQ 177
            +G             LHFAA    V VV+ LL    D       DK G   LH A    
Sbjct: 38  IEG--------RQSTPLHFAAGYNRVSVVEYLLQHGADVH---AKDKGGLVPLHNACSYG 86

Query: 178 SCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTA 237
             EV +LL++  A + +  D +  T LH A  K + EI   LL     +     RD  T 
Sbjct: 87  HYEVAELLVKHGAVVNV-ADLWKFTPLHEAAAKGKYEICKLLLQH-GADPTKKNRDGNTP 144

Query: 238 LDIAEGLPSSEEASEIKDCLARCGAV 263
           LD+       +  ++I+D L    A+
Sbjct: 145 LDLV-----KDGDTDIQDLLRGDAAL 165

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 72.8 bits (180), Expect = 2e-15
 Identities = 29/135 (21%), Positives = 44/135 (32%), Gaps = 42/135 (31%)

Query: 22  VNEVNELGETALFTAADKGHIEVVNELLKYSTKEG--LTRKNRSGFDPLHIAAVQGHHAI 79
           V+  ++ G   L  A   GH EV   L+K+    G  +   +   F PLH AA +G + I
Sbjct: 68  VHAKDKGGLVPLHNACSYGHYEVAELLVKH----GAVVNVADLWKFTPLHEAAAKGKYEI 123

Query: 80  VQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFA 139
            ++LL H                         A   +   K+         +G   L   
Sbjct: 124 CKLLLQHG------------------------ADPTK---KN--------RDGNTPLDLV 148

Query: 140 ARQGHVDVVKALLSK 154
              G  D+   L   
Sbjct: 149 KD-GDTDIQDLLRGD 162

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  114 bits (287), Expect = 2e-29
 Identities = 57/202 (28%), Positives = 90/202 (44%), Gaps = 12/202 (5%)

Query: 22  VNEVNELGETALFTAADKGHIEVVNELLKYSTKEG--LTRKNRSGFDPLHIAAVQGHHAI 79
               ++   TAL  A   GH E+V  LL+     G  +  K+ +G+ PLHIAA  G   I
Sbjct: 33  ATRTDQDSRTALHWACSAGHTEIVEFLLQL----GVPVNDKDDAGWSPLHIAASAGXDEI 88

Query: 80  VQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFA 139
           V+ LL     ++     +  TPL  AA++    +   LL   G   +        A+H A
Sbjct: 89  VKALLVKGAHVNAVNQ-NGCTPLHYAASKNRHEIAVMLLEG-GANPDAKDHYDATAMHRA 146

Query: 140 ARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKF 199
           A +G++ +V  LL        + D +G T LH+A   +  E  K L+   A+I  + +K 
Sbjct: 147 AAKGNLKMVHILLFYKASTNIQ-DTEGNTPLHLACDEERVEEAKFLVTQGASI-YIENKE 204

Query: 200 GNTALHVATRKKRTEIVTELLS 221
             T L VA       ++ + L+
Sbjct: 205 EKTPLQVAKGGL--GLILKRLA 224

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  110 bits (277), Expect = 4e-28
 Identities = 56/217 (25%), Positives = 91/217 (41%), Gaps = 11/217 (5%)

Query: 29  GETALFTAADKGHIEVVNELLKYSTKEG--LTRKNRSGFDPLHIAAVQGHHAIVQVLLDH 86
                  A      E+   +L          TR ++     LH A   GH  IV+ LL  
Sbjct: 7   NIMICNLAYSGKLDELKERILAD----KSLATRTDQDSRTALHWACSAGHTEIVEFLLQL 62

Query: 87  DPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVD 146
              ++     +  +PL  AA+ G   +V  LL K G  +     NG   LH+AA +   +
Sbjct: 63  GVPVNDKDD-AGWSPLHIAASAGXDEIVKALLVK-GAHVNAVNQNGCTPLHYAASKNRHE 120

Query: 147 VVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHV 206
           +   LL        + D    TA+H A    + ++V +LL   A+   + D  GNT LH+
Sbjct: 121 IAVMLLEGGANPDAK-DHYDATAMHRAAAKGNLKMVHILLFYKAST-NIQDTEGNTPLHL 178

Query: 207 ATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEG 243
           A  ++R E    L++    ++    ++ KT L +A+G
Sbjct: 179 ACDEERVEEAKFLVT-QGASIYIENKEEKTPLQVAKG 214

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 98.4 bits (245), Expect = 1e-23
 Identities = 44/171 (25%), Positives = 75/171 (43%), Gaps = 7/171 (4%)

Query: 22  VNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQ 81
           VN+ ++ G + L  AA  G  E+V  LL       +   N++G  PLH AA +  H I  
Sbjct: 66  VNDKDDAGWSPLHIAASAGXDEIVKALLVKGAH--VNAVNQNGCTPLHYAASKNRHEIAV 123

Query: 82  VLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAAR 141
           +LL+   +        +AT +  AA +G+  +V+ LL        I  + G   LH A  
Sbjct: 124 MLLEGGANPDAKDH-YDATAMHRAAAKGNLKMVHILLFY-KASTNIQDTEGNTPLHLACD 181

Query: 142 QGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAI 192
           +  V+  K L+++   +    +K+ +T L +A  G    ++   L      
Sbjct: 182 EERVEEAKFLVTQGASIYIE-NKEEKTPLQVAKGGL--GLILKRLAEGEEA 229

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 87.2 bits (216), Expect = 9e-20
 Identities = 42/205 (20%), Positives = 68/205 (33%), Gaps = 46/205 (22%)

Query: 60  KNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLS 119
              S     ++A       + + +L                           ++      
Sbjct: 3   GCVSNIMICNLAYSGKLDELKERILADK------------------------SLATR--- 35

Query: 120 KDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLAR--RTDKKGQTALHMAVKGQ 177
            D         + + ALH+A   GH ++V+ LL            D  G + LH+A    
Sbjct: 36  TD--------QDSRTALHWACSAGHTEIVEFLLQLG---VPVNDKDDAGWSPLHIAASAG 84

Query: 178 SCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTA 237
             E+VK LL   A +    ++ G T LH A  K R EI   LL     N +A      TA
Sbjct: 85  XDEIVKALLVKGAHV-NAVNQNGCTPLHYAASKNRHEIAVMLLEG-GANPDAKDHYDATA 142

Query: 238 LDIAEGLPSSEEASEIKDCLARCGA 262
           +  A    +++   ++   L    A
Sbjct: 143 MHRA----AAKGNLKMVHILLFYKA 163

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score =  109 bits (275), Expect = 9e-29
 Identities = 32/135 (23%), Positives = 57/135 (42%), Gaps = 8/135 (5%)

Query: 22  VNEVNELGETALFTAADKGHIEVVNELLKYSTKEG--LTRKNRSGFDPLHIAAVQGHHAI 79
           ++ +    +  L TAA +G +E V +LL+     G      NR G  P+ +    G   +
Sbjct: 5   IHMLGGSSDAGLATAAARGQVETVRQLLEA----GADPNALNRFGRRPIQVMM-MGSAQV 59

Query: 80  VQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFA 139
            ++LL H    +     +   P+  AA  G    +  L    G  L++  + G+  +  A
Sbjct: 60  AELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRA-GARLDVCDAWGRLPVDLA 118

Query: 140 ARQGHVDVVKALLSK 154
             QGH D+ + L + 
Sbjct: 119 EEQGHRDIARYLHAA 133

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 97.9 bits (245), Expect = 1e-24
 Identities = 28/125 (22%), Positives = 47/125 (37%), Gaps = 9/125 (7%)

Query: 100 TPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSK--DPQ 157
             L +AA RG    V +LL   G         G+  +      G   V + LL    +P 
Sbjct: 14  AGLATAAARGQVETVRQLLEA-GADPNALNRFGRRPIQVMM-MGSAQVAELLLLHGAEPN 71

Query: 158 LARRTDKKGQT-ALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIV 216
            A   D    T  +H A +    + + +L  A A  + + D +G   + +A  +   +I 
Sbjct: 72  CA---DPATLTRPVHDAAREGFLDTLVVLHRAGAR-LDVCDAWGRLPVDLAEEQGHRDIA 127

Query: 217 TELLS 221
             L +
Sbjct: 128 RYLHA 132

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 93.7 bits (234), Expect = 4e-23
 Identities = 24/113 (21%), Positives = 45/113 (39%), Gaps = 5/113 (4%)

Query: 130 SNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEAD 189
            +    L  AA +G V+ V+ LL          ++ G+  + + + G S +V +LLL   
Sbjct: 10  GSSDAGLATAAARGQVETVRQLLEAGADPNAL-NRFGRRPIQVMMMG-SAQVAELLLLHG 67

Query: 190 AAIVMLPDKFGNT-ALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 241
           A      D    T  +H A R+   + +  L       ++      +  +D+A
Sbjct: 68  AE-PNCADPATLTRPVHDAAREGFLDTLVVLHRA-GARLDVCDAWGRLPVDLA 118

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 55.1 bits (134), Expect = 1e-09
 Identities = 17/80 (21%), Positives = 24/80 (30%), Gaps = 4/80 (5%)

Query: 163 DKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSL 222
                  L  A      E V+ LLEA A      ++FG   + V       ++   LL  
Sbjct: 9   GGSSDAGLATAAARGQVETVRQLLEAGAD-PNALNRFGRRPIQVMMM-GSAQVAELLLLH 66

Query: 223 PDTNVNALTRDHKT-ALDIA 241
                N       T  +  A
Sbjct: 67  -GAEPNCADPATLTRPVHDA 85

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score =  109 bits (274), Expect = 2e-28
 Identities = 31/162 (19%), Positives = 55/162 (33%), Gaps = 19/162 (11%)

Query: 60  KNRSGFDPLHIAAVQGHHAIVQVLLDH--DPSLSQTTGPSNATPLVSAATRGHTAVVNEL 117
                 D L  AA +G    V+ LL+   +P+   + G     P+      G   V   L
Sbjct: 8   SMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYG---RRPIQVMM-MGSARVAELL 63

Query: 118 LSKDGGLLEISRSNGK-NALHFAARQGHVDVVKALLSK--DPQLARRTDKKGQTALHMAV 174
           L   G     +        +H AAR+G +D +  L        +    D  G+  + +A 
Sbjct: 64  LLH-GAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVR---DAWGRLPVDLAE 119

Query: 175 KGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIV 216
           +    +V + L  A           G+    +   +  ++I 
Sbjct: 120 ELGHRDVARYLRAAAG------GTRGSNHARIDAAEGPSDIP 155

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score =  107 bits (270), Expect = 7e-28
 Identities = 33/163 (20%), Positives = 56/163 (34%), Gaps = 14/163 (8%)

Query: 22  VNEVNELGETALFTAADKGHIEVVNELLKYSTKEG--LTRKNRSGFDPLHIAAVQGHHAI 79
                E     L TAA +G +E V  LL+     G      N  G  P+ +    G   +
Sbjct: 5   AGSSMEPSADWLATAAARGRVEEVRALLEA----GANPNAPNSYGRRPIQVMM-MGSARV 59

Query: 80  VQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFA 139
            ++LL H    +     +   P+  AA  G    +  L    G  L++  + G+  +  A
Sbjct: 60  AELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRA-GARLDVRDAWGRLPVDLA 118

Query: 140 ARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVV 182
              GH DV + L +           +G     +       ++ 
Sbjct: 119 EELGHRDVARYLRAAA------GGTRGSNHARIDAAEGPSDIP 155

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score =  106 bits (268), Expect = 1e-27
 Identities = 31/150 (20%), Positives = 50/150 (33%), Gaps = 14/150 (9%)

Query: 100 TPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSK--DPQ 157
             L +AA RG    V  LL   G       S G+  +      G   V + LL    +P 
Sbjct: 14  DWLATAAARGRVEEVRALLEA-GANPNAPNSYGRRPIQVMMM-GSARVAELLLLHGAEPN 71

Query: 158 LARRTDKKGQT-ALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIV 216
            A   D    T  +H A +    + + +L  A A  + + D +G   + +A      ++ 
Sbjct: 72  CA---DPATLTRPVHDAAREGFLDTLVVLHRAGAR-LDVRDAWGRLPVDLAEELGHRDVA 127

Query: 217 TELLSLPDTNVNALTRDHKTAL----DIAE 242
             L +               A     DI +
Sbjct: 128 RYLRAA-AGGTRGSNHARIDAAEGPSDIPD 156

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 91.8 bits (229), Expect = 4e-22
 Identities = 26/114 (22%), Positives = 46/114 (40%), Gaps = 9/114 (7%)

Query: 131 NGKNALHFAARQGHVDVVKALLSK--DPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEA 188
              + L  AA +G V+ V+ALL    +P      +  G+  + + + G S  V +LLL  
Sbjct: 11  PSADWLATAAARGRVEEVRALLEAGANPN---APNSYGRRPIQVMMMG-SARVAELLLLH 66

Query: 189 DAAIVMLPDKFGNT-ALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 241
            A      D    T  +H A R+   + +  L       ++      +  +D+A
Sbjct: 67  GAE-PNCADPATLTRPVHDAAREGFLDTLVVLHRA-GARLDVRDAWGRLPVDLA 118

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score =  102 bits (256), Expect = 3e-26
 Identities = 55/122 (45%), Positives = 67/122 (54%), Gaps = 3/122 (2%)

Query: 100 TPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLA 159
           TPL  AA  GH  VV  LL   G  +     NG+  LH AAR GH++VVK LL     + 
Sbjct: 4   TPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62

Query: 160 RRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTEL 219
            + DK G+T LH+A +    EVVKLLLEA A +    DK G T LH+A R    E+V  L
Sbjct: 63  AK-DKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLL 120

Query: 220 LS 221
           L 
Sbjct: 121 LE 122

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score =  101 bits (254), Expect = 7e-26
 Identities = 54/128 (42%), Positives = 72/128 (56%), Gaps = 3/128 (2%)

Query: 63  SGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDG 122
           +G  PLH+AA  GH  +V++LL+    ++     +  TPL  AA  GH  VV  LL   G
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDK-NGRTPLHLAARNGHLEVVKLLLEA-G 58

Query: 123 GLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVV 182
             +     NG+  LH AAR GH++VVK LL     +  + DK G+T LH+A +    EVV
Sbjct: 59  ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVV 117

Query: 183 KLLLEADA 190
           KLLLEA A
Sbjct: 118 KLLLEAGA 125

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 94.3 bits (236), Expect = 2e-23
 Identities = 50/113 (44%), Positives = 64/113 (56%), Gaps = 7/113 (6%)

Query: 131 NGKNALHFAARQGHVDVVKALLSK--DPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEA 188
           NG+  LH AAR GH++VVK LL    D       DK G+T LH+A +    EVVKLLLEA
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVN---AKDKNGRTPLHLAARNGHLEVVKLLLEA 57

Query: 189 DAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 241
            A +    DK G T LH+A R    E+V  LL     +VNA  ++ +T L +A
Sbjct: 58  GADVNA-KDKNGRTPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLA 108

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 82.8 bits (206), Expect = 3e-19
 Identities = 46/135 (34%), Positives = 62/135 (45%), Gaps = 41/135 (30%)

Query: 22  VNEVNELGETALFTAADKGHIEVVNELLKYSTKEG--LTRKNRSGFDPLHIAAVQGHHAI 79
           VN  ++ G T L  AA  GH+EVV  LL+     G  +  K+++G  PLH+AA  GH  +
Sbjct: 28  VNAKDKNGRTPLHLAARNGHLEVVKLLLEA----GADVNAKDKNGRTPLHLAARNGHLEV 83

Query: 80  VQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFA 139
           V++LL+                          A VN    KD         NG+  LH A
Sbjct: 84  VKLLLEAG------------------------ADVNA---KD--------KNGRTPLHLA 108

Query: 140 ARQGHVDVVKALLSK 154
           AR GH++VVK LL  
Sbjct: 109 ARNGHLEVVKLLLEA 123

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score =  101 bits (254), Expect = 9e-26
 Identities = 39/135 (28%), Positives = 58/135 (42%), Gaps = 11/135 (8%)

Query: 60  KNRSGFDPLHIAAVQGHHAIVQVLLDH--DPSLSQTTGPSNATPLVSAATRGHTAVVNEL 117
            N  G   LHIA+++G    V+ LL +  DP++    G    TPL  A   GH  VV  L
Sbjct: 6   TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAG---WTPLHEACNHGHLKVVELL 62

Query: 118 LSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSK--DPQLARRTDKKGQTALHMAVK 175
           L     L+  +     + LH AA+ GHVD+VK LLS           +  G   +     
Sbjct: 63  LQH-KALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAV---NIFGLRPVDYTDD 118

Query: 176 GQSCEVVKLLLEADA 190
                ++ L  + ++
Sbjct: 119 ESMKSLLLLPEKNES 133

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 97.9 bits (245), Expect = 2e-24
 Identities = 36/138 (26%), Positives = 55/138 (39%), Gaps = 11/138 (7%)

Query: 131 NGKNALHFAARQGHVDVVKALLSK--DPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEA 188
            G+  LH A+ +G +  V+ LL    DP      D  G T LH A      +VV+LLL+ 
Sbjct: 9   RGETLLHIASIKGDIPSVEYLLQNGSDPN---VKDHAGWTPLHEACNHGHLKVVELLLQH 65

Query: 189 DAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSE 248
            A  V       ++ LH A +    +IV  LLS    + NA+       +D        E
Sbjct: 66  KAL-VNTTGYQNDSPLHDAAKNGHVDIVKLLLSY-GASRNAVNIFGLRPVDYT----DDE 119

Query: 249 EASEIKDCLARCGAVRAN 266
               +     +  +  A+
Sbjct: 120 SMKSLLLLPEKNESSSAS 137

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 77.5 bits (192), Expect = 2e-17
 Identities = 25/132 (18%), Positives = 41/132 (31%), Gaps = 37/132 (28%)

Query: 22  VNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQ 81
            N  +  G T L  A + GH++VV  LL++     +         PLH AA  GH  IV+
Sbjct: 36  PNVKDHAGWTPLHEACNHGHLKVVELLLQHKAL--VNTTGYQNDSPLHDAAKNGHVDIVK 93

Query: 82  VLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAAR 141
           +LL +                         A  N     +          G   + +   
Sbjct: 94  LLLSYG------------------------ASRNA---VN--------IFGLRPVDYTDD 118

Query: 142 QGHVDVVKALLS 153
           +    ++     
Sbjct: 119 ESMKSLLLLPEK 130

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 40.9 bits (97), Expect = 2e-04
 Identities = 13/45 (28%), Positives = 18/45 (40%), Gaps = 1/45 (2%)

Query: 197 DKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 241
           +  G T LH+A+ K     V  LL    ++ N       T L  A
Sbjct: 7   NHRGETLLHIASIKGDIPSVEYLLQN-GSDPNVKDHAGWTPLHEA 50

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score =  100 bits (252), Expect = 1e-25
 Identities = 32/127 (25%), Positives = 50/127 (39%), Gaps = 10/127 (7%)

Query: 95  GPSNA---TPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKAL 151
           GP  +      + A   G    V + ++K G  +  +   G+  LH+AA  G +++++ L
Sbjct: 1   GPLGSMCDKEFMWALKNGDLDEVKDYVAK-GEDVNRTLEGGRKPLHYAADCGQLEILEFL 59

Query: 152 LSK--DPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATR 209
           L K  D       DK   T L  AV       VKLLL   A   +     G TA      
Sbjct: 60  LLKGADIN---APDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVK-GPDGLTAFEATDN 115

Query: 210 KKRTEIV 216
           +    ++
Sbjct: 116 QAIKALL 122

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 95.5 bits (239), Expect = 6e-24
 Identities = 31/112 (27%), Positives = 45/112 (40%), Gaps = 3/112 (2%)

Query: 130 SNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEAD 189
           S       +A + G +D VK  ++K   +  RT + G+  LH A      E+++ LL   
Sbjct: 5   SMCDKEFMWALKNGDLDEVKDYVAKGEDV-NRTLEGGRKPLHYAADCGQLEILEFLLLKG 63

Query: 190 AAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 241
           A I   PDK   T L  A  +     V  LLS    +      D  TA +  
Sbjct: 64  ADINA-PDKHHITPLLSAVYEGHVSCVKLLLSK-GADKTVKGPDGLTAFEAT 113

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 94.8 bits (237), Expect = 1e-23
 Identities = 34/133 (25%), Positives = 52/133 (39%), Gaps = 20/133 (15%)

Query: 25  VNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLL 84
           +  + +     A   G ++ V + +  +  E + R    G  PLH AA  G   I++ LL
Sbjct: 3   LGSMCDKEFMWALKNGDLDEVKDYV--AKGEDVNRTLEGGRKPLHYAADCGQLEILEFLL 60

Query: 85  DH--DPSLSQTTGPSNA------TPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNAL 136
               D          NA      TPL+SA   GH + V  LLSK G    +   +G  A 
Sbjct: 61  LKGADI---------NAPDKHHITPLLSAVYEGHVSCVKLLLSK-GADKTVKGPDGLTAF 110

Query: 137 HFAARQGHVDVVK 149
                Q    +++
Sbjct: 111 EATDNQAIKALLQ 123

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 61.3 bits (150), Expect = 8e-12
 Identities = 18/81 (22%), Positives = 28/81 (34%), Gaps = 2/81 (2%)

Query: 161 RTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELL 220
                       A+K    + VK  +     +     + G   LH A    + EI+  LL
Sbjct: 2   PLGSMCDKEFMWALKNGDLDEVKDYVAKGEDVNR-TLEGGRKPLHYAADCGQLEILEFLL 60

Query: 221 SLPDTNVNALTRDHKTALDIA 241
                ++NA  + H T L  A
Sbjct: 61  LK-GADINAPDKHHITPLLSA 80

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 99.4 bits (248), Expect = 2e-24
 Identities = 28/176 (15%), Positives = 57/176 (32%), Gaps = 20/176 (11%)

Query: 62  RSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNA--TPLVSAATRGHTAVVNELLS 119
            S +  +  AA+ G +     L +      ++   SN     L +        +   L++
Sbjct: 4   MSEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLIN 63

Query: 120 KDGGLLEISRSNGKNALHFAARQGHVDV------VKALLSK--DPQLARRTDKKGQTALH 171
           K G  ++     G        + G  D+       K  L K  D        K  +  + 
Sbjct: 64  K-GADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADI---TALYKPYKIVVF 119

Query: 172 MAVKGQSCE------VVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLS 221
             +     +      + KL+       +++ DK+G TAL    R ++   +  +  
Sbjct: 120 KNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMED 175

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 90.9 bits (226), Expect = 2e-21
 Identities = 31/168 (18%), Positives = 51/168 (30%), Gaps = 30/168 (17%)

Query: 97  SNA----TPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKN-----ALHFAARQGHVDV 147
           SNA      + +AA  G      EL  K     E   S  K+      L     +    +
Sbjct: 1   SNAMSEYRTVSAAAMLGTYEDFLELFEKGY---EDKESVLKSNILYDVLRNNNDEARYKI 57

Query: 148 VKALLSK--DPQLARRTDKKGQTALHMAVKG------QSCEVVKLLLEADAAIVMLPDKF 199
              L++K  D +      K+G T      +G       + E+ K+ LE  A I     K 
Sbjct: 58  SMFLINKGADIKS---RTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADIT-ALYKP 113

Query: 200 GNTALHVATRK------KRTEIVTELLSLPDTNVNALTRDHKTALDIA 241
               +            +   +   + S     +    +   TAL+  
Sbjct: 114 YKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFV 161

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 77.8 bits (192), Expect = 6e-17
 Identities = 18/145 (12%), Positives = 39/145 (26%), Gaps = 23/145 (15%)

Query: 26  NELGETALFTAADKGHIEVVNELLKYSTKEG--LTRKNRSGFDPLHIAAVQGHH------ 77
           + +    L    D+   ++   L+      G  +  + + G          G +      
Sbjct: 39  SNILYDVLRNNNDEARYKISMFLINK----GADIKSRTKEGTTLFFPLFQGGGNDITGTT 94

Query: 78  AIVQVLLDH--DPSLSQTTGPSNATPLVSAATRGH------TAVVNELLSKDGGLLEISR 129
            + ++ L+   D +            +                +   + S+ G  L I  
Sbjct: 95  ELCKIFLEKGADITALYKPY---KIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKD 151

Query: 130 SNGKNALHFAARQGHVDVVKALLSK 154
             G  AL F  R      +K +   
Sbjct: 152 KWGLTALEFVKRCQKPIALKMMEDY 176

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 94.8 bits (237), Expect = 2e-23
 Identities = 36/155 (23%), Positives = 56/155 (36%), Gaps = 37/155 (23%)

Query: 67  PLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLE 126
            L  AA  G    V++L+ +                         A VN    KD     
Sbjct: 17  KLLEAARAGQDDEVRILMANG------------------------ADVNA---KD----- 44

Query: 127 ISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLL 186
                G   L+ A   GH+++V+ LL     +    D  G T LH+A      E+ ++LL
Sbjct: 45  ---EYGLTPLYLATAHGHLEIVEVLLKNGADVNAV-DAIGFTPLHLAAFIGHLEIAEVLL 100

Query: 187 EADAAIVMLPDKFGNTALHVATRKKRTEIVTELLS 221
           +  A +    DKFG TA  ++      ++   L  
Sbjct: 101 KHGADVNAQ-DKFGKTAFDISIGNGNEDLAEILQK 134

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 89.4 bits (223), Expect = 2e-21
 Identities = 39/165 (23%), Positives = 63/165 (38%), Gaps = 46/165 (27%)

Query: 29  GETALFTAADKGHIEVVNELLKYSTKEG--LTRKNRSGFDPLHIAAVQGHHAIVQVLLDH 86
               L  AA  G  + V  L+      G  +  K+  G  PL++A   GH  IV+VLL +
Sbjct: 14  LGKKLLEAARAGQDDEVRILMAN----GADVNAKDEYGLTPLYLATAHGHLEIVEVLLKN 69

Query: 87  DPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVD 146
                                    A VN     D        + G   LH AA  GH++
Sbjct: 70  G------------------------ADVNA---VD--------AIGFTPLHLAAFIGHLE 94

Query: 147 VVKALLSK--DPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEAD 189
           + + LL    D       DK G+TA  +++   + ++ ++L + +
Sbjct: 95  IAEVLLKHGADV---NAQDKFGKTAFDISIGNGNEDLAEILQKLN 136

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 89.0 bits (222), Expect = 2e-21
 Identities = 37/119 (31%), Positives = 57/119 (47%), Gaps = 6/119 (5%)

Query: 126 EISRSNGKN---ALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVV 182
                +G +    L  AAR G  D V+ L++    +  + D+ G T L++A      E+V
Sbjct: 5   HHHHHHGSDLGKKLLEAARAGQDDEVRILMANGADVNAK-DEYGLTPLYLATAHGHLEIV 63

Query: 183 KLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 241
           ++LL+  A +    D  G T LH+A      EI  E+L     +VNA  +  KTA DI+
Sbjct: 64  EVLLKNGADVNA-VDAIGFTPLHLAAFIGHLEIA-EVLLKHGADVNAQDKFGKTAFDIS 120

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 40.1 bits (95), Expect = 3e-04
 Identities = 11/43 (25%), Positives = 21/43 (48%), Gaps = 3/43 (6%)

Query: 13  EVAEIRSSV---VNEVNELGETALFTAADKGHIEVVNELLKYS 52
           E+AE+       VN  ++ G+TA   +   G+ ++   L K +
Sbjct: 94  EIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN 136

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 91.7 bits (229), Expect = 1e-22
 Identities = 40/108 (37%), Positives = 52/108 (48%), Gaps = 3/108 (2%)

Query: 131 NGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADA 190
           +G   LH AA+ GH + VK LLSK   +     K G T LH+A K    E+VKLLL   A
Sbjct: 8   DGNTPLHNAAKNGHAEEVKKLLSKGADV-NARSKDGNTPLHLAAKNGHAEIVKLLLAKGA 66

Query: 191 AIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTAL 238
            +     K GNT  H+A +    EIV  L +    +VNA +       
Sbjct: 67  DVNA-RSKDGNTPEHLAKKNGHHEIVKLLDAK-GADVNARSWGSSHHH 112

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 89.0 bits (222), Expect = 1e-21
 Identities = 39/106 (36%), Positives = 52/106 (49%), Gaps = 3/106 (2%)

Query: 100 TPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLA 159
           TPL +AA  GH   V +LLSK G  +     +G   LH AA+ GH ++VK LL+K   + 
Sbjct: 11  TPLHNAAKNGHAEEVKKLLSK-GADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVN 69

Query: 160 RRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALH 205
            R  K G T  H+A K    E+VKLL    A +        +   H
Sbjct: 70  AR-SKDGNTPEHLAKKNGHHEIVKLLDAKGADVNA-RSWGSSHHHH 113

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 86.7 bits (216), Expect = 9e-21
 Identities = 38/148 (25%), Positives = 55/148 (37%), Gaps = 42/148 (28%)

Query: 26  NELGETALFTAADKGHIEVVNELLKYSTKEG--LTRKNRSGFDPLHIAAVQGHHAIVQVL 83
           ++ G T L  AA  GH E V +LL      G  +  +++ G  PLH+AA  GH  IV++L
Sbjct: 6   SKDGNTPLHNAAKNGHAEEVKKLLSK----GADVNARSKDGNTPLHLAAKNGHAEIVKLL 61

Query: 84  LDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQG 143
           L                           A VN    +          +G    H A + G
Sbjct: 62  LAKG------------------------ADVNA---RS--------KDGNTPEHLAKKNG 86

Query: 144 HVDVVKALLSKDPQLARRTDKKGQTALH 171
           H ++VK L +K   +  R         H
Sbjct: 87  HHEIVKLLDAKGADVNAR-SWGSSHHHH 113

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 66.2 bits (163), Expect = 1e-13
 Identities = 31/79 (39%), Positives = 39/79 (49%), Gaps = 2/79 (2%)

Query: 163 DKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSL 222
            K G T LH A K    E VK LL   A +     K GNT LH+A +    EIV  LL+ 
Sbjct: 6   SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNA-RSKDGNTPLHLAAKNGHAEIVKLLLAK 64

Query: 223 PDTNVNALTRDHKTALDIA 241
              +VNA ++D  T   +A
Sbjct: 65  -GADVNARSKDGNTPEHLA 82

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 62.4 bits (153), Expect = 3e-12
 Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 6/67 (8%)

Query: 22 VNEVNELGETALFTAADKGHIEVVNELLKYSTKEG--LTRKNRSGFDPLHIAAVQGHHAI 79
          VN  ++ G T L  AA  GH E+V  LL      G  +  +++ G  P H+A   GHH I
Sbjct: 35 VNARSKDGNTPLHLAAKNGHAEIVKLLLAK----GADVNARSKDGNTPEHLAKKNGHHEI 90

Query: 80 VQVLLDH 86
          V++L   
Sbjct: 91 VKLLDAK 97

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 96.3 bits (239), Expect = 3e-22
 Identities = 41/206 (19%), Positives = 70/206 (33%), Gaps = 25/206 (12%)

Query: 22  VNE-VNELGETALFTAADKGHIEVVNELLKYSTKEG--LTRKNRSGFDPLHIAAVQGH-- 76
           +N  V+E G T L       ++E+V  L+K+    G      +  G   L  A    +  
Sbjct: 123 LNIPVDEHGNTPLHWLTSIANLELVKHLVKH----GSNRLYGDNMGESCLVKAVKSVNNY 178

Query: 77  -HAIVQVLLDHDPSLSQTTGPSNATPL-----------VSAATRGHTAVVNELLSKDGGL 124
                + LLD+           N T L            SAA + +  ++   + K    
Sbjct: 179 DSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNR 238

Query: 125 LEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARR---TDKKGQTALHMAVKGQSCEV 181
              S +N K +          D +   L     +A      D  G T L++A +  +  +
Sbjct: 239 PIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISI 298

Query: 182 VKLLLEADAAIVMLPDKFGNTALHVA 207
           V  LL+  A    + +K G   +   
Sbjct: 299 VDALLDYGADP-FIANKSGLRPVDFG 323

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 92.8 bits (230), Expect = 6e-21
 Identities = 40/251 (15%), Positives = 74/251 (29%), Gaps = 39/251 (15%)

Query: 18  RSSVVNEVNELGETAL-FTAADKGHIEVVNELLKYST-------KEGLTRKNRSGFDPLH 69
            SS  N             + D    EV +              + G T        PLH
Sbjct: 85  DSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNT--------PLH 136

Query: 70  IAAVQGHHAIVQVLLDH--DPSLSQTTGPSNATPLVSAATRGH---TAVVNELLSKDGGL 124
                 +  +V+ L+ H  +       G    + LV A    +   +     LL      
Sbjct: 137 WLTSIANLELVKHLVKHGSNRLYGDNMG---ESCLVKAVKSVNNYDSGTFEALLDYLYPC 193

Query: 125 LEISRSNGKNALHFAAR-----------QGHVDVVKALLSKDPQLARRTDKKGQTALHMA 173
           L +  S  +  LH               + ++D++   + K      ++    + +    
Sbjct: 194 LILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPND 253

Query: 174 VKGQSCEVVKLLLEADAAIVML---PDKFGNTALHVATRKKRTEIVTELLSLPDTNVNAL 230
             G+  + +   L+    I  +    D  G+T L++A R     IV  LL     +    
Sbjct: 254 KNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDY-GADPFIA 312

Query: 231 TRDHKTALDIA 241
            +     +D  
Sbjct: 313 NKSGLRPVDFG 323

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 74.7 bits (183), Expect = 7e-15
 Identities = 33/277 (11%), Positives = 70/277 (25%), Gaps = 21/277 (7%)

Query: 54  KEGLTRKNRS-GFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNA----------TPL 102
             G    N +   D      +   H +    L     + +                   L
Sbjct: 8   PSGDNENNGTDDNDRTAGPIITFTHDLTSDFLSSPLKIMKALPSPVVNDNEQKMKLEAFL 67

Query: 103 VSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRT 162
                     +   L +          S+ +   H +      +V  A  +    L    
Sbjct: 68  QRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPV 127

Query: 163 DKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRK---KRTEIVTEL 219
           D+ G T LH      + E+VK L++  +   +  D  G + L  A +      +     L
Sbjct: 128 DEHGNTPLHWLTSIANLELVKHLVKHGSNR-LYGDNMGESCLVKAVKSVNNYDSGTFEAL 186

Query: 220 LSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVRANELNQPRDELRKTV 279
           L      +      ++T L            S               +         + +
Sbjct: 187 LDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQN------RPI 240

Query: 280 TQIKKDVHTQLEQTRRTNKNVHNISKELRKLHREGIN 316
                +  ++        K+    + +L+ +    +N
Sbjct: 241 QSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLN 277

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 66.2 bits (161), Expect = 4e-12
 Identities = 25/178 (14%), Positives = 51/178 (28%), Gaps = 30/178 (16%)

Query: 1   MVGNLSGAEFDTEVAEIRSSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRK 60
              N   +     + +     +   + +  T L        +   +   KY         
Sbjct: 173 KSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKY--------- 223

Query: 61  NRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSK 120
                             ++  ++       Q+      +           +++  L  K
Sbjct: 224 --------------YLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLK 269

Query: 121 DGGLLEISR--SNGKNALHFAARQGHVDVVKALLSK--DPQLARRTDKKGQTALHMAV 174
                 ++   SNG   L+ AAR G++ +V ALL    DP +A   +K G   +    
Sbjct: 270 WIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIA---NKSGLRPVDFGA 324

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 86.5 bits (215), Expect = 8e-21
 Identities = 36/115 (31%), Positives = 54/115 (46%), Gaps = 6/115 (5%)

Query: 105 AATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDK 164
            ++  H    + L+ + G  +    S+    L  AAR G  D V+ L++    +    DK
Sbjct: 1   GSSHHHHHHSSGLVPR-GSHMG---SDLGKKLLEAARAGQDDEVRILMANGADV-AAKDK 55

Query: 165 KGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTEL 219
            G T LH+A +    EVVKLLLEA A +    DKFG TA  ++      ++   L
Sbjct: 56  NGSTPLHLAARNGHLEVVKLLLEAGADVXA-QDKFGKTAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 80.3 bits (199), Expect = 1e-18
 Identities = 32/150 (21%), Positives = 53/150 (35%), Gaps = 41/150 (27%)

Query: 36  AADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTG 95
            +   H    + L+   +              L  AA  G    V++L+ +         
Sbjct: 1   GSSHHHHHHSSGLVPRGSH-----MGSDLGKKLLEAARAGQDDEVRILMANG-------- 47

Query: 96  PSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKD 155
                           A V     KD         NG   LH AAR GH++VVK LL   
Sbjct: 48  ----------------ADVAA---KD--------KNGSTPLHLAARNGHLEVVKLLLEAG 80

Query: 156 PQLARRTDKKGQTALHMAVKGQSCEVVKLL 185
             +  + DK G+TA  +++   + ++ ++L
Sbjct: 81  ADVXAQ-DKFGKTAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 74.1 bits (183), Expect = 2e-16
 Identities = 27/116 (23%), Positives = 47/116 (40%), Gaps = 6/116 (5%)

Query: 139 AARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDK 198
            +   H      L+ +   +           L  A +    + V++L+   A +    DK
Sbjct: 1   GSSHHHHHHSSGLVPRGSHM----GSDLGKKLLEAARAGQDDEVRILMANGADVAA-KDK 55

Query: 199 FGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIK 254
            G+T LH+A R    E+V  LL     +V A  +  KTA DI+    + + A  ++
Sbjct: 56  NGSTPLHLAARNGHLEVVKLLLEA-GADVXAQDKFGKTAFDISIDNGNEDLAEILQ 110

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 67.2 bits (165), Expect = 4e-14
 Identities = 24/98 (24%), Positives = 39/98 (39%), Gaps = 11/98 (11%)

Query: 24  EVNELGETALFTAADKGHIEVVNELLKYSTKEG--LTRKNRSGFDPLHIAAVQGHHAIVQ 81
            +       L  AA  G  + V  L+      G  +  K+++G  PLH+AA  GH  +V+
Sbjct: 19  HMGSDLGKKLLEAARAGQDDEVRILMAN----GADVAAKDKNGSTPLHLAARNGHLEVVK 74

Query: 82  VLLDH--DPSLSQTTGPSNATPLVSAATRGHTAVVNEL 117
           +LL+   D       G    T    +   G+  +   L
Sbjct: 75  LLLEAGADVXAQDKFG---KTAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 50.7 bits (122), Expect = 3e-08
 Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 6/64 (9%)

Query: 22  VNEVNELGETALFTAADKGHIEVVNELLKYSTKEG--LTRKNRSGFDPLHIAAVQGHHAI 79
           V   ++ G T L  AA  GH+EVV  LL+     G  +  +++ G     I+   G+  +
Sbjct: 50  VAAKDKNGSTPLHLAARNGHLEVVKLLLEA----GADVXAQDKFGKTAFDISIDNGNEDL 105

Query: 80  VQVL 83
            ++L
Sbjct: 106 AEIL 109

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 84.7 bits (211), Expect = 2e-20
 Identities = 44/93 (47%), Positives = 53/93 (56%), Gaps = 6/93 (6%)

Query: 131 NGKNALHFAARQGHVDVVKALLSK--DPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEA 188
           NG+  LH AAR GH++VVK LL    D       DK G+T LH+A +    EVVKLLLEA
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVN---AKDKNGRTPLHLAARNGHLEVVKLLLEA 57

Query: 189 DAAIVMLPDKFGNTALHVATRKKRTEIVTELLS 221
            A +    DK G T LH+A R    E+V  LL 
Sbjct: 58  GADV-NAKDKNGRTPLHLAARNGHLEVVKLLLE 89

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 82.0 bits (204), Expect = 2e-19
 Identities = 44/93 (47%), Positives = 51/93 (54%), Gaps = 6/93 (6%)

Query: 100 TPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSK--DPQ 157
           TPL  AA  GH  VV  LL   G  +     NG+  LH AAR GH++VVK LL    D  
Sbjct: 4   TPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62

Query: 158 LARRTDKKGQTALHMAVKGQSCEVVKLLLEADA 190
                DK G+T LH+A +    EVVKLLLEA A
Sbjct: 63  ---AKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 78.9 bits (196), Expect = 2e-18
 Identities = 39/94 (41%), Positives = 50/94 (53%), Gaps = 6/94 (6%)

Query: 63  SGFDPLHIAAVQGHHAIVQVLLDH--DPSLSQTTGPSNATPLVSAATRGHTAVVNELLSK 120
           +G  PLH+AA  GH  +V++LL+   D +     G    TPL  AA  GH  VV  LL  
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNG---RTPLHLAARNGHLEVVKLLLEA 57

Query: 121 DGGLLEISRSNGKNALHFAARQGHVDVVKALLSK 154
            G  +     NG+  LH AAR GH++VVK LL  
Sbjct: 58  -GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA 90

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 63.1 bits (155), Expect = 9e-13
 Identities = 27/67 (40%), Positives = 40/67 (59%), Gaps = 6/67 (8%)

Query: 22 VNEVNELGETALFTAADKGHIEVVNELLKYSTKEG--LTRKNRSGFDPLHIAAVQGHHAI 79
          VN  ++ G T L  AA  GH+EVV  LL+     G  +  K+++G  PLH+AA  GH  +
Sbjct: 28 VNAKDKNGRTPLHLAARNGHLEVVKLLLEA----GADVNAKDKNGRTPLHLAARNGHLEV 83

Query: 80 VQVLLDH 86
          V++LL+ 
Sbjct: 84 VKLLLEA 90

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 64.2 bits (156), Expect = 1e-11
 Identities = 26/97 (26%), Positives = 38/97 (39%), Gaps = 3/97 (3%)

Query: 128 SRSNGKNALHFAARQGHVDVVKA--LLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLL 185
                + ALH A R      +     L ++     +   KG TALH      + E +KLL
Sbjct: 165 GHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLL 224

Query: 186 LEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSL 222
           L   A+I  + ++ G T L +A R K       L   
Sbjct: 225 LRGKASI-EIANESGETPLDIAKRLKHEHCEELLTQA 260

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 61.6 bits (149), Expect = 8e-11
 Identities = 28/151 (18%), Positives = 55/151 (36%), Gaps = 15/151 (9%)

Query: 50  KYSTKEGLTRKNRSGFDPLH---IAAVQGHHAIVQVLLDHDPSLSQTTGPSNA-----TP 101
           KY  +    +K+      LH    A        +         L++    +N      T 
Sbjct: 113 KYMERRYARKKHADTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETA 172

Query: 102 LVSAATRGHTAVVN--ELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSK--DPQ 157
           L  A        ++  + L ++ G L+     G  ALH+     + + +K LL      +
Sbjct: 173 LHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIE 232

Query: 158 LARRTDKKGQTALHMAVKGQSCEVVKLLLEA 188
           +    ++ G+T L +A + +     +LL +A
Sbjct: 233 I---ANESGETPLDIAKRLKHEHCEELLTQA 260

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 55.0 bits (132), Expect = 1e-08
 Identities = 22/114 (19%), Positives = 44/114 (38%), Gaps = 10/114 (8%)

Query: 160 RRTDKKGQTALHMAVKG--QSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVT 217
               +  +TALH+AV+   ++   +   L  ++  +      G+TALH        E + 
Sbjct: 163 ANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECL- 221

Query: 218 ELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVRANELNQP 271
           +LL     ++       +T LDIA+      +    ++ L +     +   N  
Sbjct: 222 KLLLRGKASIEIANESGETPLDIAK----RLKHEHCEELLTQA---LSGRFNSH 268

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 46.9 bits (111), Expect = 5e-06
 Identities = 16/63 (25%), Positives = 25/63 (39%), Gaps = 2/63 (3%)

Query: 22  VNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQ 81
           +++    G TAL       + E +  LL+      +   N SG  PL IA    H    +
Sbjct: 198 LDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIA--NESGETPLDIAKRLKHEHCEE 255

Query: 82  VLL 84
           +L 
Sbjct: 256 LLT 258

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 59.4 bits (143), Expect = 9e-10
 Identities = 30/123 (24%), Positives = 50/123 (40%), Gaps = 3/123 (2%)

Query: 68  LHIAAVQGHHAIVQVLLDHDPSLSQTTG-PSNATPLVSAATRGHTAVVNELLSKDGGLLE 126
              +        +   L H   ++   G   NATPL+ A          E L ++G  + 
Sbjct: 204 FRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLAC-EFLLQNGANVN 262

Query: 127 ISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLL 186
            + S G+  LH A   GH  +    L +   L  R D +G+  L +A++  + ++V LL 
Sbjct: 263 QADSAGRGPLHHATILGHTGLACLFLKRGADLGAR-DSEGRDPLTIAMETANADIVTLLR 321

Query: 187 EAD 189
            A 
Sbjct: 322 LAK 324

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 53.2 bits (127), Expect = 7e-08
 Identities = 24/138 (17%), Positives = 43/138 (31%), Gaps = 6/138 (4%)

Query: 26  NELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLD 85
            +   T L  A     +     LL+      + + + +G  PLH A + GH  +  + L 
Sbjct: 232 GQDNATPLIQATAANSLLACEFLLQNGAN--VNQADSAGRGPLHHATILGHTGLACLFLK 289

Query: 86  HDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHV 145
               L          PL  A    +  +V  L        E ++    +  +        
Sbjct: 290 RGADLGARD-SEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETY---LDIFR 345

Query: 146 DVVKALLSKDPQLARRTD 163
           D          +L+RR+ 
Sbjct: 346 DFSLMASDDPEKLSRRSH 363

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 47.9 bits (113), Expect = 4e-06
 Identities = 20/90 (22%), Positives = 31/90 (34%), Gaps = 2/90 (2%)

Query: 131 NGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADA 190
           +    L  A     +   + LL     + +  D  G+  LH A       +  L L+  A
Sbjct: 234 DNATPLIQATAANSLLACEFLLQNGANVNQA-DSAGRGPLHHATILGHTGLACLFLKRGA 292

Query: 191 AIVMLPDKFGNTALHVATRKKRTEIVTELL 220
             +   D  G   L +A      +IVT L 
Sbjct: 293 D-LGARDSEGRDPLTIAMETANADIVTLLR 321

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 55.8 bits (134), Expect = 8e-09
 Identities = 35/150 (23%), Positives = 55/150 (36%), Gaps = 13/150 (8%)

Query: 50  KYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNA-----TPLVS 104
           KY       R+       L  A        V     +     Q     +A       L  
Sbjct: 138 KYVEHR-FARRCTPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHL 196

Query: 105 AATRGHTAVVN--ELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSK--DPQLAR 160
           A    + A +   + + ++GG L+   ++G  ALH+AA     D +K LL          
Sbjct: 197 AVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGT-- 254

Query: 161 RTDKKGQTALHMAVKGQSCEVVKLLLEADA 190
             ++ G+TAL +A K    E  +LL +A A
Sbjct: 255 -VNEAGETALDIARKKHHKECEELLEQAQA 283

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 55.0 bits (132), Expect = 2e-08
 Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 4/101 (3%)

Query: 128 SRSNGKNALHFAARQGHVD--VVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLL 185
           +++  +  LH A +  +     +   + ++          G TALH A      + +KLL
Sbjct: 186 AQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLL 245

Query: 186 LEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTN 226
           L+  A +  + ++ G TAL +A +K   E   ELL      
Sbjct: 246 LKGRALVGTV-NEAGETALDIARKKHHKECE-ELLEQAQAG 284

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 54.2 bits (130), Expect = 3e-08
 Identities = 23/89 (25%), Positives = 36/89 (40%), Gaps = 5/89 (5%)

Query: 156 PQLARRTDKKGQTALHMAV---KGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKR 212
           P          +  LH+AV      S  +V  ++  +   +      GNTALH A    +
Sbjct: 180 PLPGPDAQAPEELVLHLAVKVANQASLPLVDFII-QNGGHLDAKAADGNTALHYAALYNQ 238

Query: 213 TEIVTELLSLPDTNVNALTRDHKTALDIA 241
            + + +LL      V  +    +TALDIA
Sbjct: 239 PDCL-KLLLKGRALVGTVNEAGETALDIA 266

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 48.8 bits (116), Expect = 2e-06
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 2/62 (3%)

Query: 22  VNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQ 81
           ++     G TAL  AA     + +  LLK      +   N +G   L IA  + H    +
Sbjct: 219 LDAKAADGNTALHYAALYNQPDCLKLLLKGRAL--VGTVNEAGETALDIARKKHHKECEE 276

Query: 82  VL 83
           +L
Sbjct: 277 LL 278

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.2 bits (124), Expect = 4e-07
 Identities = 58/368 (15%), Positives = 114/368 (30%), Gaps = 95/368 (25%)

Query: 5   LSGAEFDTEVAEIRSSVVNEVNELGET-ALF-TAADKGHIEV---VNELLK--Y------ 51
           LS  E D         ++   + +  T  LF T   K    V   V E+L+  Y      
Sbjct: 46  LSKEEID--------HIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSP 97

Query: 52  ----------------STKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTG 95
                             ++ L   N+  F   +++ +Q +  + Q LL     L     
Sbjct: 98  IKTEQRQPSMMTRMYIEQRDRLYNDNQV-FAKYNVSRLQPYLKLRQALL----ELR---- 148

Query: 96  PSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKD 155
           P+    +      G T V  ++       ++         L+      + +  + +L   
Sbjct: 149 PAKNVLIDGVLGSGKTWVALDVCLSYK--VQCKMDFKIFWLNL----KNCNSPETVLEML 202

Query: 156 PQLARRTDKKG-QTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTAL----HVATRK 210
            +L  + D      + H +        ++  L       +L  K     L    +V   K
Sbjct: 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR-----RLLKSKPYENCLLVLLNVQNAK 257

Query: 211 K--------RTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGA 262
                    +  + T    + D  ++A T  H +    +  L + +E   +   L +   
Sbjct: 258 AWNAFNLSCKILLTTRFKQVTDF-LSAATTTHISLDHHSMTL-TPDEVKSL---LLKYLD 312

Query: 263 VRANELNQPRDELRKT----VTQI---KKDVHTQLEQTRRTNKN-VHNISK--------- 305
            R  +L  PR E+  T    ++ I    +D     +  +  N + +  I +         
Sbjct: 313 CRPQDL--PR-EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPA 369

Query: 306 ELRKLHRE 313
           E RK+   
Sbjct: 370 EYRKMFDR 377

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.5 bits (99), Expect = 3e-04
 Identities = 47/306 (15%), Positives = 87/306 (28%), Gaps = 87/306 (28%)

Query: 124 LLEISRSNGKNALH-FAARQGHVDVVKALLSKD-PQLARRTDKKGQTALHMAVKGQSCEV 181
           L     S  +  +  F         V+ +L  +   L         + +    +  S   
Sbjct: 67  LFWTLLSKQEEMVQKF---------VEEVLRINYKFLM--------SPIKTEQRQPSMMT 109

Query: 182 VKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSL-PDTNVNALTRDH------ 234
              + + D  +      F     +V+  +   ++   LL L P  NV  +          
Sbjct: 110 RMYIEQRDR-LYNDNQVF--AKYNVSRLQPYLKLRQALLELRPAKNV-LI---DGVLGSG 162

Query: 235 KTALDIAEGLPSSEEASEIKDC------LARCGAVRANELNQPRDELR---KTVTQIKKD 285
           KT +   +    S +     D       L  C        N P   L    K + QI  +
Sbjct: 163 KTWV-ALDVC-LSYKVQCKMDFKIFWLNLKNC--------NSPETVLEMLQKLLYQIDPN 212

Query: 286 VHTQLEQTRRTNKNVHNISKELRKLHREGINNATNSVTVVAVLFATVAFASIFTVPGGDD 345
             ++ + +      +H+I  ELR+L +       N + V+                   +
Sbjct: 213 WTSRSDHSSNIKLRIHSIQAELRRLLKS--KPYENCLLVL------------------LN 252

Query: 346 DNGKAVVVRRASF----KIFFIFNAIALFTSL-AVVVVQITLV---RGETKAEKRVVEVI 397
                      +F    KI        +   L A     I+L       T  E +   ++
Sbjct: 253 VQNAKAW---NAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK--SLL 307

Query: 398 NKLMWL 403
            K  +L
Sbjct: 308 LK--YL 311

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	491
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
2pnn_A	273	Transient receptor potential cation channel subfa	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
2etb_A	256	Transient receptor potential cation channel subfam	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.98
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.97
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.97
2etb_A	256	Transient receptor potential cation channel subfam	99.97
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.97
2pnn_A	273	Transient receptor potential cation channel subfa	99.97
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.97
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.97
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.97
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.96
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.96
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.96
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.96
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.96
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.96
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.96
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.96
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.96
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.96
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.96
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.95
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.95
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.95
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.95
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.95
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.95
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.95
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.95
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.95
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.95
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.95
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.94
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.94
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.92
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.92
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.91
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.91
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.91
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.91
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.91
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.9
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.89
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.89
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.89
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.88
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.88
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.88
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.87
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.87
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.86
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.86
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.86
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.85
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.85
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.85
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.85
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.84
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.83
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.8
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.8
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.79
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.79
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.79
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.79
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.79
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.77
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.69
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.66

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=7.7e-40  Score=307.51  Aligned_cols=233  Identities=25%  Similarity=0.335  Sum_probs=216.9

Q ss_pred             hhhccCCCCCCHHHHHHHcCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCC
Q 011183           21 VVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNAT  100 (491)
Q Consensus        21 ~l~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~t  100 (491)
                      +++..|.+|.||||+|+..|+.+++++|++.|.+  ++..+..|.||||+|+..|+.+++++|+++|+++ +..+..|.|
T Consensus         3 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t   79 (237)
T 3b7b_A            3 NFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGAN--IDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALV-DPKDAEGST   79 (237)
T ss_dssp             CCCCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCC--TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCC-CCCCTTSCC
T ss_pred             CcccccCCCCCHHHHHHHcCcHHHHHHHHHcCCC--cCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCC-CCCCCCCCc
Confidence            4678899999999999999999999999998876  6778889999999999999999999999999987 678889999


Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCCHHHHHHhCCCHH
Q 011183          101 PLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCE  180 (491)
Q Consensus       101 pL~~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~~~~  180 (491)
                      |||+|+..|+.+++++|++.++.+.+..+..|.||||+|+..|+.+++++|+++++++ +..|..|.||||+|+..|+.+
T Consensus        80 ~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~  158 (237)
T 3b7b_A           80 CLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDI-NIRDNEENICLHWAAFSGCVD  158 (237)
T ss_dssp             HHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHCCHH
T ss_pred             HHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CccCCCCCCHHHHHHHCCCHH
Confidence            9999999999999999999977888899999999999999999999999999999987 778999999999999999999


Q ss_pred             HHHHHHhcCcccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCchhhHHHHHHHHH
Q 011183          181 VVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLAR  259 (491)
Q Consensus       181 iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~d~~G~t~L~~A~~~~~~~~~~~i~~~L~~  259 (491)
                      ++++|++.|++ ++.+|..|.||||+|+..++.+++++|++ .|++++.+|..|+||+|+|+..++.....++.+.+.+
T Consensus       159 ~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~gad~~~~d~~g~t~l~~A~~~~~~~~~~~l~~~l~d  235 (237)
T 3b7b_A          159 IAEILLAAKCD-LHAVNIHGDSPLHIAARENRYDCVVLFLS-RDSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQD  235 (237)
T ss_dssp             HHHHHHTTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHT-TTCCTTCCCTTSCCHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCC-CCCcCCCCCCHHHHHHHhCCHhHHHHHHH-cCCCCCccCCCCCCHHHHHHHHHHHHHHHHHHHHhhc
Confidence            99999999998 78899999999999999999999999999 7999999999999999999998876666666666554

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=3e-40  Score=314.09  Aligned_cols=230  Identities=22%  Similarity=0.258  Sum_probs=180.8

Q ss_pred             hhhccCCCCCCHHHHHHHcC-------------CHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhcC
Q 011183           21 VVNEVNELGETALFTAADKG-------------HIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHD   87 (491)
Q Consensus        21 ~l~~~~~~g~T~Lh~Aa~~g-------------~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~   87 (491)
                      ++|.+|.+|.||||+|+..|             +.++++.|++.+.+.. ...|..|.||||+|+..|+.+++++|+++|
T Consensus         2 dvn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g   80 (253)
T 1yyh_A            2 DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLH-NQTDRTGETALHLAARYSRSDAAKRLLEAS   80 (253)
T ss_dssp             ---------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             CCCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcc-cccCCCCCcHHHHHHHcCCHHHHHHHHHcC
Confidence            57889999999999999987             8999999999887642 456889999999999999999999999999


Q ss_pred             CCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhCCcccccccCCCCC
Q 011183           88 PSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQ  167 (491)
Q Consensus        88 ~~l~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~  167 (491)
                      +++ +..|..|.||||+|+..|+.+++++|++.++.+++..+.+|.||||+|+..|+.+++++|++.+.++ +..|..|+
T Consensus        81 ~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~  158 (253)
T 1yyh_A           81 ADA-NIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADV-NAVDDLGK  158 (253)
T ss_dssp             CCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCT-TCBCTTSC
T ss_pred             CCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCC-CCcCCCCC
Confidence            997 6788999999999999999999999999977688899999999999999999999999999999987 77899999


Q ss_pred             CHHHHHHhCCCHHHHHHHHhcCcccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCc
Q 011183          168 TALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSS  247 (491)
Q Consensus       168 t~Lh~Aa~~~~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~d~~G~t~L~~A~~~~~~  247 (491)
                      ||||+|+..|+.+++++|++.|++ ++.+|..|+||||+|+..|+.+++++|++ .|++++.+|..|+||+|+|...++.
T Consensus       159 t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~-~ga~~~~~d~~g~tpl~~A~~~g~~  236 (253)
T 1yyh_A          159 SALHWAAAVNNVDAAVVLLKNGAN-KDMQNNREETPLFLAAREGSYETAKVLLD-HFANRDITDHMDRLPRDIAQERMHH  236 (253)
T ss_dssp             BHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTCCCHHHHHHHTTCH
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHCCCHHHHHHHHH-cCCCccccccCCCCHHHHHHHcCCH
Confidence            999999999999999999999999 78899999999999999999999999999 7999999999999999999998876


Q ss_pred             hhhHHHHHHHHH
Q 011183          248 EEASEIKDCLAR  259 (491)
Q Consensus       248 ~~~~~i~~~L~~  259 (491)
                      +    +.++|..
T Consensus       237 ~----i~~~l~~  244 (253)
T 1yyh_A          237 D----IVRLLDL  244 (253)
T ss_dssp             H----HHHHHHC
T ss_pred             H----HHHHHHH
Confidence            5    5555544

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=1.5e-39  Score=313.34  Aligned_cols=221  Identities=24%  Similarity=0.250  Sum_probs=188.7

Q ss_pred             hhccCCCCCCHHHHHHHcCCHHHHHHHHhccCccc-cccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCC
Q 011183           22 VNEVNELGETALFTAADKGHIEVVNELLKYSTKEG-LTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNAT  100 (491)
Q Consensus        22 l~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~-l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~t  100 (491)
                      ++.+|.+|+||||+|+..|+.++|++|++.+.+.. ++..|..|.||||+|+..|+.+++++|+++|+++ +..|..|.|
T Consensus         2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~t   80 (282)
T 1oy3_D            2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGV-LVAERGGHT   80 (282)
T ss_dssp             CCCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-SCCCTTSCC
T ss_pred             CCccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCC
Confidence            57889999999999999999999999999887643 6778999999999999999999999999999998 678899999


Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCC----------------------------------------------cccccCCCCCc
Q 011183          101 PLVSAATRGHTAVVNELLSKDGG----------------------------------------------LLEISRSNGKN  134 (491)
Q Consensus       101 pL~~A~~~g~~~~v~~LL~~~~~----------------------------------------------~~~~~d~~g~t  134 (491)
                      |||+|+..|+.+++++|++.+..                                              .++..+..|.|
T Consensus        81 pL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t  160 (282)
T 1oy3_D           81 ALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHT  160 (282)
T ss_dssp             HHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCC
T ss_pred             HHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcC
Confidence            99999999999999999986432                                              24567889999


Q ss_pred             HHHHHHHcCCHHHHHHHHhCCcccccccCCCCCCHHHHHHhCCCHHHHHHHHhcCcccccCCCCCCChHHHHHHHcCcHH
Q 011183          135 ALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTE  214 (491)
Q Consensus       135 pLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~~~~~  214 (491)
                      |||+|+..|+.+++++|+++++++....+..|+||||+|++.|+.+++++|+++|++ ++.+|..|+||||+|+..|+.+
T Consensus       161 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad-~~~~d~~g~tpL~~A~~~~~~~  239 (282)
T 1oy3_D          161 PLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGAD-PTARMYGGRTPLGSALLRPNPI  239 (282)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHTSSCHH
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCC-CcccccCCCCHHHHHHHcCCcH
Confidence            999999999999999999999998443335699999999999999999999999998 7889999999999999999999


Q ss_pred             HHHHHhcCCCCCcccccCCCCCHHHHHhhCC
Q 011183          215 IVTELLSLPDTNVNALTRDHKTALDIAEGLP  245 (491)
Q Consensus       215 iv~~Ll~~~g~~~~~~d~~G~t~L~~A~~~~  245 (491)
                      ++++|++ .|++++.+|..|.||+++|....
T Consensus       240 ~v~~Ll~-~ga~~~~~~~~g~tpl~~a~~~~  269 (282)
T 1oy3_D          240 LARLLRA-HGAPEPEDGGDKLSPCSSSGSDS  269 (282)
T ss_dssp             HHHHHHH-TTCCCCCCC--------------
T ss_pred             HHHHHHH-cCCCcCcCCCcccccccccCCcc
Confidence            9999999 89999999999999999987654

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=3.5e-39  Score=303.50  Aligned_cols=229  Identities=24%  Similarity=0.292  Sum_probs=201.1

Q ss_pred             hhccCCCCCCHHHHHHHcCCHHHHHHHHh----ccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCC
Q 011183           22 VNEVNELGETALFTAADKGHIEVVNELLK----YSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPS   97 (491)
Q Consensus        22 l~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~----~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~   97 (491)
                      ++.+|.+|+||||+|+..|+.+++++|++    .+.  +++..|..|.||||+|+..|+.+++++|+++|+++ +..+..
T Consensus         2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~--~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~   78 (241)
T 1k1a_A            2 ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGR--ELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASP-MALDRH   78 (241)
T ss_dssp             -----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTC--CSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTT
T ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCC--CCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCCC
Confidence            57789999999999999999999999997    343  36788999999999999999999999999999997 677899


Q ss_pred             CCCHHHHHHHcCCHHHHHHHHhcCCC---cccccCCCCCcHHHHHHHcCCHHHHHHHHhCCcccccccC-CCCCCHHHHH
Q 011183           98 NATPLVSAATRGHTAVVNELLSKDGG---LLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTD-KKGQTALHMA  173 (491)
Q Consensus        98 g~tpL~~A~~~g~~~~v~~LL~~~~~---~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d-~~g~t~Lh~A  173 (491)
                      |.||||+|+..|+.+++++|++.+..   ..+..|..|.||||+|+..|+.+++++|+++++++ +..+ ..|.||||+|
T Consensus        79 g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~~g~t~L~~A  157 (241)
T 1k1a_A           79 GQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADI-DAVDIKSGRSPLIHA  157 (241)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTTCCCHHHHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCc-ccccccCCCcHHHHH
Confidence            99999999999999999999998642   67788899999999999999999999999999998 4445 8899999999


Q ss_pred             HhCCCHHHHHHHHhcCcccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCchhhHHH
Q 011183          174 VKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEI  253 (491)
Q Consensus       174 a~~~~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~d~~G~t~L~~A~~~~~~~~~~~i  253 (491)
                      ++.|+.+++++|++.|++ ++.+|..|+||||+|+..|+.+++++|++ .|++++.+|..|+||+|+|...+    ..++
T Consensus       158 ~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~tpl~~A~~~~----~~~i  231 (241)
T 1k1a_A          158 VENNSLSMVQLLLQHGAN-VNAQMYSGSSALHSASGRGLLPLVRTLVR-SGADSSLKNCHNDTPLMVARSRR----VIDI  231 (241)
T ss_dssp             HHTTCHHHHHHHHHTTCC-TTCBCTTSCBHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCTTTTCSSHH----HHHH
T ss_pred             HHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCCcCCCCCCHHHHHHhcC----cHHH
Confidence            999999999999999999 78899999999999999999999999999 89999999999999999998753    3345


Q ss_pred             HHHHHHc
Q 011183          254 KDCLARC  260 (491)
Q Consensus       254 ~~~L~~~  260 (491)
                      ++.|.+.
T Consensus       232 ~~~l~~~  238 (241)
T 1k1a_A          232 LRGKATR  238 (241)
T ss_dssp             HTC----
T ss_pred             HhhhccC
Confidence            5554443

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=9.2e-38  Score=300.65  Aligned_cols=248  Identities=27%  Similarity=0.357  Sum_probs=220.0

Q ss_pred             hhhHHHHHhhchhhhhcc-CCCCCCHHHHHHHcCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhc
Q 011183            8 AEFDTEVAEIRSSVVNEV-NELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDH   86 (491)
Q Consensus         8 ~~~~~~~~~~~~~~l~~~-~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~   86 (491)
                      .+....+++ .+.+++.. +..|.||||+|+..|+.+++++|++.+.+  ++..+..|.||||+|+..|+.+++++|+++
T Consensus        18 ~~~v~~Ll~-~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~   94 (285)
T 1wdy_A           18 VDLVQQLLE-GGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD--PVLRKKNGATPFLLAAIAGSVKLLKLFLSK   94 (285)
T ss_dssp             HHHHHHHHH-TTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC--TTCCCTTCCCHHHHHHHHTCHHHHHHHHHT
T ss_pred             HHHHHHHHH-cCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC--CcccCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            345555555 45677777 88899999999999999999999998876  567888999999999999999999999999


Q ss_pred             CCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCccccc----------CCCCCcHHHHHHHcCCHHHHHHHHhC-C
Q 011183           87 DPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEIS----------RSNGKNALHFAARQGHVDVVKALLSK-D  155 (491)
Q Consensus        87 ~~~l~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~----------d~~g~tpLh~A~~~g~~~iv~~Ll~~-~  155 (491)
                      |+++ +..|..|.||||+|+..|+.+++++|++.+ ..++..          +..|.||||.|+..|+.+++++|++. +
T Consensus        95 g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~  172 (285)
T 1wdy_A           95 GADV-NECDFYGFTAFMEAAVYGKVKALKFLYKRG-ANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMG  172 (285)
T ss_dssp             TCCT-TCBCTTCCBHHHHHHHTTCHHHHHHHHHTT-CCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSC
T ss_pred             CCCC-CccCcccCCHHHHHHHhCCHHHHHHHHHhC-CCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcC
Confidence            9997 678899999999999999999999999884 444444          77899999999999999999999998 6


Q ss_pred             cccccccCCCCCCHHHHHHhCCC----HHHHHHHHhcCcccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCccccc
Q 011183          156 PQLARRTDKKGQTALHMAVKGQS----CEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALT  231 (491)
Q Consensus       156 ~~~~~~~d~~g~t~Lh~Aa~~~~----~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~d  231 (491)
                      .++ +..|..|+||||.|+..++    .+++++|++.|++ ++.+|..|+||||+|+..|+.+++++|++..|++++.+|
T Consensus       173 ~~~-~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~  250 (285)
T 1wdy_A          173 ADV-NACDNMGRNALIHALLSSDDSDVEAITHLLLDHGAD-VNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTD  250 (285)
T ss_dssp             CCT-TCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCC-SSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCC
T ss_pred             CCC-CccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCC-CCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCCccccC
Confidence            665 7789999999999999999    8999999999998 788999999999999999999999999997899999999


Q ss_pred             CCCCCHHHHHhhCCCchhhHHHHHHHHHcCccccc
Q 011183          232 RDHKTALDIAEGLPSSEEASEIKDCLARCGAVRAN  266 (491)
Q Consensus       232 ~~G~t~L~~A~~~~~~~~~~~i~~~L~~~ga~~~~  266 (491)
                      ..|+||||+|+..++.    +++++|+++|+....
T Consensus       251 ~~g~t~l~~A~~~~~~----~i~~~Ll~~Ga~~~~  281 (285)
T 1wdy_A          251 SDGKTALLLAVELKLK----KIAELLCKRGASTDC  281 (285)
T ss_dssp             TTSCCHHHHHHHTTCH----HHHHHHHHHSSCSCC
T ss_pred             CCCCcHHHHHHHcCcH----HHHHHHHHcCCCCCc
Confidence            9999999999998764    488999999987643

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=7.1e-38  Score=303.22  Aligned_cols=228  Identities=25%  Similarity=0.296  Sum_probs=205.6

Q ss_pred             hhhhccCCCCCCHHHHHHHcCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCC
Q 011183           20 SVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNA   99 (491)
Q Consensus        20 ~~l~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~   99 (491)
                      ..++..|.+|+||||+|+..|+.+++++|++.+.+  ++..|..|.||||+|+..|+.+++++|+++++++ +..|..|.
T Consensus        50 ~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~--~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~  126 (285)
T 3d9h_A           50 NPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWA--VNIITADHVSPLHEACLGGHLSCVKILLKHGAQV-NGVTADWH  126 (285)
T ss_dssp             CTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCC--SCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCS-SCCCTTCC
T ss_pred             CcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCC--CCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCC-CCCCCCCC
Confidence            34678899999999999999999999999998766  6788999999999999999999999999999997 67889999


Q ss_pred             CHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCCHHHHHHhCCCH
Q 011183          100 TPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSC  179 (491)
Q Consensus       100 tpL~~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~~~  179 (491)
                      ||||+|+..|+.+++++|++.+. +++. +.+|.||||+|+..|+.+++++|++.+.++ +..|..|+||||+|+..|+.
T Consensus       127 t~L~~A~~~~~~~~v~~Ll~~g~-~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~  203 (285)
T 3d9h_A          127 TPLFNACVSGSWDCVNLLLQHGA-SVQP-ESDLASPIHEAARRGHVECVNSLIAYGGNI-DHKISHLGTPLYLACENQQR  203 (285)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTC-CSSC-SCTTSCHHHHHHHHTCHHHHHHHHHTTCCT-TCCBTTTBCHHHHHHHTTCH
T ss_pred             CHHHHHHHcCHHHHHHHHHHCCC-CCCC-CCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHcCcH
Confidence            99999999999999999999844 4443 456999999999999999999999999987 77899999999999999999


Q ss_pred             HHHHHHHhcCcccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCchhhHHHHHHHHH
Q 011183          180 EVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLAR  259 (491)
Q Consensus       180 ~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~d~~G~t~L~~A~~~~~~~~~~~i~~~L~~  259 (491)
                      +++++|++.|++ ++ .|..|+||||+|+..++.+++++|++ .|++++.+|.+|+||+|+|...      .++.++|++
T Consensus       204 ~~v~~Ll~~ga~-~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~-~gad~~~~d~~g~t~l~~A~~~------~~~~~~Ll~  274 (285)
T 3d9h_A          204 ACVKKLLESGAD-VN-QGKGQDSPLHAVVRTASEELACLLMD-FGADTQAKNAEGKRPVELVPPE------SPLAQLFLE  274 (285)
T ss_dssp             HHHHHHHHTTCC-TT-CCBTTBCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCGGGGSCTT------SHHHHHHHH
T ss_pred             HHHHHHHHCCCC-CC-CCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCcCCCCCCHHHHhcCc------cHHHHHHHH
Confidence            999999999998 55 48899999999999999999999999 7999999999999999999842      246777777


Q ss_pred             c-Cc
Q 011183          260 C-GA  262 (491)
Q Consensus       260 ~-ga  262 (491)
                      . |+
T Consensus       275 ~~~a  278 (285)
T 3d9h_A          275 REGA  278 (285)
T ss_dssp             HC--
T ss_pred             hhcc
Confidence            6 44

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=3.4e-37  Score=316.41  Aligned_cols=263  Identities=29%  Similarity=0.379  Sum_probs=144.5

Q ss_pred             chhhhhccCCCCCCHHHHHHHcCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCC
Q 011183           18 RSSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPS   97 (491)
Q Consensus        18 ~~~~l~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~   97 (491)
                      .+.+++..|..|.||||+|+..|+.+++++|++.+.+  ....+..|.||||+|+..|+.+++++|+++++++ +..+..
T Consensus       102 ~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~--~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~  178 (437)
T 1n11_A          102 NNANPNLATTAGHTPLHIAAREGHVETVLALLEKEAS--QACMTKKGFTPLHVAAKYGKVRVAELLLERDAHP-NAAGKN  178 (437)
T ss_dssp             HTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC--SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCSS
T ss_pred             CCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCC--CcCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-CCCCCC
Confidence            3555555666666666666666666666666655433  2334444555555555555555555555555544 334444


Q ss_pred             CCCHHHHHHHcCCHHHHHHHHhcC--------------------------------CCcccccCCCCCcHHHHHHHcCCH
Q 011183           98 NATPLVSAATRGHTAVVNELLSKD--------------------------------GGLLEISRSNGKNALHFAARQGHV  145 (491)
Q Consensus        98 g~tpL~~A~~~g~~~~v~~LL~~~--------------------------------~~~~~~~d~~g~tpLh~A~~~g~~  145 (491)
                      |.||||+|+..|+.+++++|++++                                +.+.+..+..|.||||+|+..|+.
T Consensus       179 g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~  258 (437)
T 1n11_A          179 GLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHA  258 (437)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHCCCH
Confidence            555555555555555555554442                                223444455555555555555555


Q ss_pred             HHHHHHHhCCcccccccCCCCCCHHHHHHhCCCHHHHHHHHhcCcccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCC
Q 011183          146 DVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDT  225 (491)
Q Consensus       146 ~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~~~~~iv~~Ll~~~g~  225 (491)
                      +++++|++++++. +..|..|.||||+|++.|+.+++++|+++|.+ ++.+|..|+||||+|+..|+.+++++|++ .|+
T Consensus       259 ~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~ga  335 (437)
T 1n11_A          259 EMVALLLSKQANG-NLGNKSGLTPLHLVAQEGHVPVADVLIKHGVM-VDATTRMGYTPLHVASHYGNIKLVKFLLQ-HQA  335 (437)
T ss_dssp             HHHHHHHTTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCC-TTCCCSSCCCHHHHHHHSSCSHHHHHHHH-TTC
T ss_pred             HHHHHHHhcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHhCCcc-CCCCCCCCCCHHHHHHHcCcHHHHHHHHh-cCC
Confidence            5555555555554 44455556666666666666666666666555 45556666666666666666666666666 466


Q ss_pred             CcccccCCCCCHHHHHhhCCCchhhHHHHHHHHHcCccccccCCCchHHHHHHHHHhhhhhhhhh
Q 011183          226 NVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVRANELNQPRDELRKTVTQIKKDVHTQL  290 (491)
Q Consensus       226 ~~~~~d~~G~t~L~~A~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l  290 (491)
                      +++.+|..|+||||+|+..++.    +++++|+++|+........+.+++..+......++.+.+
T Consensus       336 d~n~~~~~g~t~L~~A~~~g~~----~iv~~Ll~~ga~~~~~~~~g~t~l~~A~~~g~~~~~~~l  396 (437)
T 1n11_A          336 DVNAKTKLGYSPLHQAAQQGHT----DIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVL  396 (437)
T ss_dssp             CTTCCCTTSCCHHHHHHHTTCH----HHHHHHHHTTCCSCCCCSSSCCHHHHHHHTTCHHHHHHH
T ss_pred             CCCCCCCCCCCHHHHHHHCChH----HHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCcHHHHHHH
Confidence            6666666666666666665443    355666666665555545555555554444433333333

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=1.1e-37  Score=290.77  Aligned_cols=214  Identities=25%  Similarity=0.256  Sum_probs=195.4

Q ss_pred             CCCHHHHHHHcCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhcC--CCCcccCCCCCCCHHHHHH
Q 011183           29 GETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHD--PSLSQTTGPSNATPLVSAA  106 (491)
Q Consensus        29 g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~--~~l~~~~~~~g~tpL~~A~  106 (491)
                      |+||||.|+..|+.++++.|++.+.+. ....|..|.||||+|+..|+.+++++|++++  +++....+..|.||||+|+
T Consensus         2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~   80 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQELLHSKPSL-LLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIAC   80 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHHHHCGGG-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHH
T ss_pred             CccHHHHHHHhCCHHHHHHHHhcCccc-cccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHH
Confidence            789999999999999999999987653 3558899999999999999999999999999  6654447889999999999


Q ss_pred             HcCCHHHHHHHHhcC-CCcccccCCCCCcHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCCHHHHHHhCCCHHHHHHH
Q 011183          107 TRGHTAVVNELLSKD-GGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLL  185 (491)
Q Consensus       107 ~~g~~~~v~~LL~~~-~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~~~~iv~~L  185 (491)
                      ..|+.+++++|++.+ +.+++..+.+|.||||+|+..|+.+++++|++++.++ +..|..|+||||+|+..|+.+++++|
T Consensus        81 ~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~L  159 (228)
T 2dzn_A           81 SVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASV-RIKDKFNQIPLHRAASVGSLKLIELL  159 (228)
T ss_dssp             HHCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HcCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCCHHHHHHH
Confidence            999999999999985 2667888999999999999999999999999999987 77899999999999999999999999


Q ss_pred             HhcCcccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhC
Q 011183          186 LEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGL  244 (491)
Q Consensus       186 l~~~~~~~~~~d~~G~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~d~~G~t~L~~A~~~  244 (491)
                      ++.|+..++.+|..|+||||+|+..|+.+++++|++..|++++.+|..|+||+|+|...
T Consensus       160 l~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~A~~~  218 (228)
T 2dzn_A          160 CGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNE  218 (228)
T ss_dssp             HTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCTTSCBGGGGCSST
T ss_pred             HhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCcHHHHHHHH
Confidence            99994448899999999999999999999999999438999999999999999999753

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=7.8e-38  Score=292.63  Aligned_cols=227  Identities=26%  Similarity=0.332  Sum_probs=208.3

Q ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCCHHHHH
Q 011183           26 NELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSA  105 (491)
Q Consensus        26 ~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A  105 (491)
                      +..++||||.|+..|+.+.++.|++.+.. ..+..|..|.||||+|+..|+.+++++|+++++++ +..|..|.||||+|
T Consensus         3 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~-~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A   80 (231)
T 3aji_A            3 GCVSNIMICNLAYSGKLDELKERILADKS-LATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV-NDKDDAGWSPLHIA   80 (231)
T ss_dssp             CCCSSSHHHHHHHHTCHHHHHHHHHHCGG-GGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHH
T ss_pred             CccccchHHHHHHhCCHHHHHHHHHhchh-hhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCC-CCcCCCCCCHHHHH
Confidence            56789999999999999999999997644 35778999999999999999999999999999987 67889999999999


Q ss_pred             HHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCCHHHHHHhCCCHHHHHHH
Q 011183          106 ATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLL  185 (491)
Q Consensus       106 ~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~~~~iv~~L  185 (491)
                      +..|+.+++++|++. +.+++..|..|.||||+|+..|+.+++++|++++.++ +..|..|.||||+|+..|+.+++++|
T Consensus        81 ~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~L  158 (231)
T 3aji_A           81 ASAGXDEIVKALLVK-GAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANP-DAKDHYDATAMHRAAAKGNLKMVHIL  158 (231)
T ss_dssp             HHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             HHcCHHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHcCCHHHHHHH
Confidence            999999999999998 5667888999999999999999999999999999987 77899999999999999999999999


Q ss_pred             HhcCcccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCchhhHHHHHHHHHcCc
Q 011183          186 LEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGA  262 (491)
Q Consensus       186 l~~~~~~~~~~d~~G~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~d~~G~t~L~~A~~~~~~~~~~~i~~~L~~~ga  262 (491)
                      ++.|++ ++.+|..|+||||+|+..++.+++++|++ .|++++.+|..|+||+|+|...    ...++.++|.++|+
T Consensus       159 l~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~A~~~----~~~~i~~lL~~~~a  229 (231)
T 3aji_A          159 LFYKAS-TNIQDTEGNTPLHLACDEERVEEAKFLVT-QGASIYIENKEEKTPLQVAKGG----LGLILKRLAEGEEA  229 (231)
T ss_dssp             HHTTCC-SCCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCSCCCCTTSCCHHHHSCHH----HHHHHHHHHHHHHH
T ss_pred             HhcCCC-ccccCCCCCCHHHHHHHCCCHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHhh----HHHHHHHHHccccc
Confidence            999998 78899999999999999999999999999 7999999999999999999764    34557777777665

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=2.6e-37  Score=317.28  Aligned_cols=264  Identities=31%  Similarity=0.366  Sum_probs=215.2

Q ss_pred             chhhhhccCCCCCCHHHHHHHcCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCC
Q 011183           18 RSSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPS   97 (491)
Q Consensus        18 ~~~~l~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~   97 (491)
                      ++..++..+..|.||||+|+..|+.++|++|++.|.+  ++..+..|.||||+|+..|+.+++++|+++++++ +..+..
T Consensus         3 ~g~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~--~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~   79 (437)
T 1n11_A            3 PGISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGAS--PNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKV-NAKAKD   79 (437)
T ss_dssp             ------------CCHHHHHHHHTCHHHHHHHHHTTCC--SCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCS-SCCCTT
T ss_pred             CCCCccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCC--CCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-CCCCCC
Confidence            4667888899999999999999999999999998766  5667888999999999999999999999999887 677888


Q ss_pred             CCCHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCCHHHHHHhCC
Q 011183           98 NATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQ  177 (491)
Q Consensus        98 g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~  177 (491)
                      |.||||+|+..|+.+++++|+++ +.+++..+..|.||||+|+..|+.++++.|++++.+. ...+..|.||||+|+..|
T Consensus        80 g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~g  157 (437)
T 1n11_A           80 DQTPLHCAARIGHTNMVKLLLEN-NANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQ-ACMTKKGFTPLHVAAKYG  157 (437)
T ss_dssp             SCCHHHHHHHHTCHHHHHHHHHH-TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTT
T ss_pred             CCCHHHHHHHCCCHHHHHHHHhC-CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCC-cCCCCCCCCHHHHHHHcC
Confidence            99999999999999999999987 5667888889999999999999999999999988876 567888999999999999


Q ss_pred             CHHHHHHHHhcCcccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCchhhHHHHHHH
Q 011183          178 SCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCL  257 (491)
Q Consensus       178 ~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~d~~G~t~L~~A~~~~~~~~~~~i~~~L  257 (491)
                      +.+++++|++.+++ ++..|..|.||||+|+..++.+++++|++ .|++++..+..|.||||+|+..++.    ++.+.|
T Consensus       158 ~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~----~~~~~L  231 (437)
T 1n11_A          158 KVRVAELLLERDAH-PNAAGKNGLTPLHVAVHHNNLDIVKLLLP-RGGSPHSPAWNGYTPLHIAAKQNQV----EVARSL  231 (437)
T ss_dssp             CHHHHHHHHHTTCC-TTCCCSSCCCHHHHHHHTTCHHHHHHHGG-GTCCSCCCCTTCCCHHHHHHHTTCH----HHHHHH
T ss_pred             CHHHHHHHHhCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHh-CCCCCCCcCCCCCCHHHHHHHcCCH----HHHHHH
Confidence            99999999999888 77888899999999999999999999998 7888998999999999999887664    477888


Q ss_pred             HHcCccccccCCCchHHHHHHHHHhhhhhhhhhHH
Q 011183          258 ARCGAVRANELNQPRDELRKTVTQIKKDVHTQLEQ  292 (491)
Q Consensus       258 ~~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~  292 (491)
                      ++.|+..+.....+.+++..+......++.+.|.+
T Consensus       232 l~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~  266 (437)
T 1n11_A          232 LQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLS  266 (437)
T ss_dssp             HHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHT
T ss_pred             HHcCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHh
Confidence            88888776666667777777776666666555543

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=3.2e-37  Score=306.21  Aligned_cols=256  Identities=26%  Similarity=0.266  Sum_probs=132.9

Q ss_pred             HHHHhhchhhhhccCCCCCCHHHHHHHcCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCc
Q 011183           12 TEVAEIRSSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLS   91 (491)
Q Consensus        12 ~~~~~~~~~~l~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~   91 (491)
                      ..++...+.+++..|..|.||||+|+..|+.++|++|++.|.+  ++..|..|.||||+|+..|+.+++++|+++|+++ 
T Consensus        41 ~~ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~--~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~-  117 (351)
T 3utm_A           41 MALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGAD--VHAKDKGGLVPLHNACSYGHYEVTELLLKHGACV-  117 (351)
T ss_dssp             HHHCCTTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCC--TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-
T ss_pred             HHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC--CCccCCCCCcHHHHHHHCCCHHHHHHHHHCCCCC-
Confidence            3344444445555555555555555555555555555554433  3444555555555555555555555555555554 


Q ss_pred             ccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHH---------------------HHcCCHHHHHH
Q 011183           92 QTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFA---------------------ARQGHVDVVKA  150 (491)
Q Consensus        92 ~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A---------------------~~~g~~~iv~~  150 (491)
                      +..|..|.||||+|+..|+.+++++|++. +.+++..+..|.+|+|.|                     +..++.+.++.
T Consensus       118 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (351)
T 3utm_A          118 NAMDLWQFTPLHEAASKNRVEVCSLLLSH-GADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKK  196 (351)
T ss_dssp             TCCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHH
Confidence            34445555555555555555555555554 222332222222222211                     11111111111


Q ss_pred             HHhCCcccccccCCCCCCHHHHHHhC---CCHHHHHHHHhcCcccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCc
Q 011183          151 LLSKDPQLARRTDKKGQTALHMAVKG---QSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNV  227 (491)
Q Consensus       151 Ll~~~~~~~~~~d~~g~t~Lh~Aa~~---~~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~~~~~iv~~Ll~~~g~~~  227 (491)
                      ++...... ...+..|.||||+|+..   +..+++++|++.|++ ++.+|..|+||||+|+..|+.+++++|++ .|+++
T Consensus       197 ~l~~~~~~-~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~ga~~  273 (351)
T 3utm_A          197 TLALEIIN-FKQPQSHETALHCAVASLHPKRKQVAELLLRKGAN-VNEKNKDFMTPLHVAAERAHNDVMEVLHK-HGAKM  273 (351)
T ss_dssp             HTTTCCTT-CCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHH-TTCCT
T ss_pred             HHHhhccc-ccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCC-cCCcCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCC
Confidence            11111111 12344566666666666   445666666666666 55666666666666666666666666666 56666


Q ss_pred             ccccCCCCCHHHHHhhCCCchhhHHHHHHHHHcCccccccCCCchHHHHHH
Q 011183          228 NALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVRANELNQPRDELRKT  278 (491)
Q Consensus       228 ~~~d~~G~t~L~~A~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~l~~~  278 (491)
                      +.+|..|+||||+|+..++.    +++++|+++|+........+.++++..
T Consensus       274 n~~d~~g~t~L~~A~~~~~~----~~v~~Ll~~gad~~~~~~~g~tal~~a  320 (351)
T 3utm_A          274 NALDSLGQTALHRAALAGHL----QTCRLLLSYGSDPSIISLQGFTAAQMG  320 (351)
T ss_dssp             TCCCTTSCCHHHHHHHHTCH----HHHHHHHHTTCCTTCCCTTSCCHHHHS
T ss_pred             CCcCCCCCCHHHHHHHcCcH----HHHHHHHHcCCCCCCcCCCCCChhhhh
Confidence            66666666666666665443    366666666666555555555555544

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=2.9e-38  Score=316.59  Aligned_cols=238  Identities=21%  Similarity=0.243  Sum_probs=208.1

Q ss_pred             hhchhhhhccCCCCCCHHHHHHHcCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCC
Q 011183           16 EIRSSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTG   95 (491)
Q Consensus        16 ~~~~~~l~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~   95 (491)
                      ..++.+.+..|.+|.||||+|+..|+.++|++|++.|.+  ++..|..|.||||+|+..|+.+++++|++++++..   +
T Consensus         7 ~~~~~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~--~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~---~   81 (364)
T 3ljn_A            7 DFPKLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVS--PTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHS---L   81 (364)
T ss_dssp             ---------CCHHHHHHHHHHHHHTCHHHHHHHHHTTCC--TTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCC---C
T ss_pred             hccCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC--ccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcc---c
Confidence            345667888999999999999999999999999998866  67889999999999999999999999999998652   3


Q ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhcC---CCcccc-----------------cCCCCCcHHHHHHHcC--CHHHHHHHHh
Q 011183           96 PSNATPLVSAATRGHTAVVNELLSKD---GGLLEI-----------------SRSNGKNALHFAARQG--HVDVVKALLS  153 (491)
Q Consensus        96 ~~g~tpL~~A~~~g~~~~v~~LL~~~---~~~~~~-----------------~d~~g~tpLh~A~~~g--~~~iv~~Ll~  153 (491)
                      .+|.||||+|+..|+.+++++|++..   +...+.                 .|.+|.||||+|+..|  +.+++++|++
T Consensus        82 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~  161 (364)
T 3ljn_A           82 WHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQ  161 (364)
T ss_dssp             BTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHH
T ss_pred             cCCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHH
Confidence            57999999999999999999999872   233333                 7788999999999999  9999999999


Q ss_pred             CCcccccccCCCCCCHHHHHHhCCCHHHHHHHHhcCccc----ccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCccc
Q 011183          154 KDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAI----VMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNA  229 (491)
Q Consensus       154 ~~~~~~~~~d~~g~t~Lh~Aa~~~~~~iv~~Ll~~~~~~----~~~~d~~G~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~  229 (491)
                      ++.++ +..|..|+||||+|+..|+.+++++|++.+++.    ++.+|..|+||||+|+..|+.+++++|++ .|++++.
T Consensus       162 ~ga~~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~gad~~~  239 (364)
T 3ljn_A          162 LGASP-TAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVE-MGIDVNM  239 (364)
T ss_dssp             HTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHT-TTCCTTC
T ss_pred             cCCCC-cccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHH-cCCCCCC
Confidence            99987 778999999999999999999999999998873    67889999999999999999999999999 8999999


Q ss_pred             ccCCCCCHHHHHhhCCCchhhHHHHHHHHHcCccc
Q 011183          230 LTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVR  264 (491)
Q Consensus       230 ~d~~G~t~L~~A~~~~~~~~~~~i~~~L~~~ga~~  264 (491)
                      +|..|.||||+|+..++.+    ++++|++.|+..
T Consensus       240 ~d~~g~tpL~~A~~~g~~~----~v~~Ll~~~~~~  270 (364)
T 3ljn_A          240 EDNEHTVPLYLSVRAAMVL----LTKELLQKTDVF  270 (364)
T ss_dssp             CCTTSCCHHHHHHHTCCHH----HHHHHHHHSCHH
T ss_pred             CCCCCCCHHHHHHHhChHH----HHHHHHHcCCch
Confidence            9999999999999987654    788888887653

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=1.3e-36  Score=292.61  Aligned_cols=255  Identities=25%  Similarity=0.269  Sum_probs=227.2

Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHhccCccccccC-CCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCCHHHHHH
Q 011183           28 LGETALFTAADKGHIEVVNELLKYSTKEGLTRK-NRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAA  106 (491)
Q Consensus        28 ~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~-~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~  106 (491)
                      +|.||||.|++.|+.+++++|++.+.+  ++.. +..|.||||+|+..|+.+++++|+++|+++ +..|..|.||||+|+
T Consensus         4 ~g~~~L~~A~~~g~~~~v~~Ll~~g~~--~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~   80 (285)
T 1wdy_A            4 EDNHLLIKAVQNEDVDLVQQLLEGGAN--VNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADP-VLRKKNGATPFLLAA   80 (285)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTTCC--TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHH
T ss_pred             ccchHHHHHHHcCCHHHHHHHHHcCCC--cccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHH
Confidence            578999999999999999999998866  4444 778999999999999999999999999997 678899999999999


Q ss_pred             HcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhCCccccccc----------CCCCCCHHHHHHhC
Q 011183          107 TRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRT----------DKKGQTALHMAVKG  176 (491)
Q Consensus       107 ~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~----------d~~g~t~Lh~Aa~~  176 (491)
                      ..|+.+++++|+++ +.+++..|..|.||||+|+..|+.+++++|++++.++ +..          +..|.||||.|+..
T Consensus        81 ~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~~~~~~~~~~~g~t~L~~A~~~  158 (285)
T 1wdy_A           81 IAGSVKLLKLFLSK-GADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANV-NLRRKTKEDQERLRKGGATALMDAAEK  158 (285)
T ss_dssp             HHTCHHHHHHHHHT-TCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCT-TCCCCCCHHHHHTTCCCCCHHHHHHHH
T ss_pred             HcCCHHHHHHHHHc-CCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCc-ccccccHHHHHhhccCCCcHHHHHHHc
Confidence            99999999999998 5668889999999999999999999999999999887 333          78899999999999


Q ss_pred             CCHHHHHHHHhc-CcccccCCCCCCChHHHHHHHcCc----HHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCchhhH
Q 011183          177 QSCEVVKLLLEA-DAAIVMLPDKFGNTALHVATRKKR----TEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEAS  251 (491)
Q Consensus       177 ~~~~iv~~Ll~~-~~~~~~~~d~~G~TpLh~A~~~~~----~~iv~~Ll~~~g~~~~~~d~~G~t~L~~A~~~~~~~~~~  251 (491)
                      |+.+++++|++. +.+ ++..|..|+||||.|+..++    .+++++|++ .|++++.+|..|.||||+|+..++.+   
T Consensus       159 ~~~~~v~~Ll~~~~~~-~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~---  233 (285)
T 1wdy_A          159 GHVEVLKILLDEMGAD-VNACDNMGRNALIHALLSSDDSDVEAITHLLLD-HGADVNVRGERGKTPLILAVEKKHLG---  233 (285)
T ss_dssp             TCHHHHHHHHHTSCCC-TTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHH-TTCCSSCCCTTSCCHHHHHHHTTCHH---
T ss_pred             CCHHHHHHHHHhcCCC-CCccCCCCCCHHHHHHHccccchHHHHHHHHHH-cCCCCCCcCCCCCcHHHHHHHcCCHH---
Confidence            999999999998 776 78899999999999999999    999999999 89999999999999999999987654   


Q ss_pred             HHHHHHHH-cCccccccCCCchHHHHHHHHHhhhhhhhhhHHh
Q 011183          252 EIKDCLAR-CGAVRANELNQPRDELRKTVTQIKKDVHTQLEQT  293 (491)
Q Consensus       252 ~i~~~L~~-~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~  293 (491)
                       +++.|++ .|+..+.....+.+++..+......++.+.|.+.
T Consensus       234 -~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~  275 (285)
T 1wdy_A          234 -LVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKR  275 (285)
T ss_dssp             -HHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred             -HHHHHHhccCCCccccCCCCCcHHHHHHHcCcHHHHHHHHHc
Confidence             7777887 8888777777788888888777666666665543

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=3.1e-38  Score=302.99  Aligned_cols=217  Identities=27%  Similarity=0.365  Sum_probs=173.0

Q ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHhccCcc------ccccCCCCCChHHHHHHHcCcH-HHHHHHHhcCCCCcccCCC
Q 011183           24 EVNELGETALFTAADKGHIEVVNELLKYSTKE------GLTRKNRSGFDPLHIAAVQGHH-AIVQVLLDHDPSLSQTTGP   96 (491)
Q Consensus        24 ~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~------~l~~~~~~g~TpLh~A~~~g~~-~iv~~Ll~~~~~l~~~~~~   96 (491)
                      ..|.++.|||+.||..|+.++|++||+.+.+.      .++..+..|.||||.|+..++. .+++.|++.|+++ +..|.
T Consensus         6 kkd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadv-n~~d~   84 (269)
T 4b93_B            6 KKDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGV-NVTSQ   84 (269)
T ss_dssp             -CCCHHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCCT-TCCCT
T ss_pred             ccCccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCC-CCcCC
Confidence            35777889999999999999999999987643      2456778899999999988876 4889999999998 78899


Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCCHHHHHHhC
Q 011183           97 SNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKG  176 (491)
Q Consensus        97 ~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~  176 (491)
                      +|+||||+|+..|+.+++++|++. +.+++..+.+|.||+|.|+..++.++++.|++.++++ +..|..|+||||+|+..
T Consensus        85 ~G~TpLh~A~~~g~~~~v~~Ll~~-~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~-n~~d~~g~TpL~~A~~~  162 (269)
T 4b93_B           85 DGSSPLHVAALHGRADLIPLLLKH-GANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKP-NKKDLSGNTPLIYACSG  162 (269)
T ss_dssp             TSCCHHHHHHHTTCTTHHHHHHHT-TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTCCCHHHHHHHT
T ss_pred             CCCCHHHHHHHcCcHHHHHHHHhc-CCCcCccCCCCCCccccccccChHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHC
Confidence            999999999999999999999988 5678889999999999999999999999999999997 77899999999999999


Q ss_pred             CCHHHHHHHHhcCcccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCC
Q 011183          177 QSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLP  245 (491)
Q Consensus       177 ~~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~d~~G~t~L~~A~~~~  245 (491)
                      |+.+++++|++.|++ ++.+|..|+||||+|+..|+.++|++|++ .|+|++.+|..|+||||+|++.+
T Consensus       163 g~~~~v~~Ll~~gad-vn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~-~Gad~~~~d~~G~TpL~~A~~~~  229 (269)
T 4b93_B          163 GHHELVALLLQHGAS-INASNNKGNTALHEAVIEKHVFVVELLLL-HGASVQVLNKRQRTAVDCAEQNS  229 (269)
T ss_dssp             TCGGGHHHHHHTTCC-TTCBCTTSCBHHHHHHHTTCHHHHHHHHH-TTCCSCCCCTTSCCSGGGSCTTC
T ss_pred             CCHHHHHHHHHCCCC-CCccccCCCcHHHHHHHcCCHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHhCC
Confidence            999999999999999 88999999999999999999999999999 79999999999999999997643

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=1.1e-37  Score=313.54  Aligned_cols=237  Identities=23%  Similarity=0.291  Sum_probs=199.1

Q ss_pred             hhhhhccC-CCCCCHHHHHHHcCCHHHHHHHH--------hccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhcCCC
Q 011183           19 SSVVNEVN-ELGETALFTAADKGHIEVVNELL--------KYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPS   89 (491)
Q Consensus        19 ~~~l~~~~-~~g~T~Lh~Aa~~g~~~~v~~Ll--------~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~   89 (491)
                      ...+|..| ..|.||||+|+..|+.+++++|+        +.|.+  ++..|..|.||||+|+..|+.+++++|+++|++
T Consensus       114 ~~~~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~--vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~  191 (373)
T 2fo1_E          114 RESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGAD--VNAMDCDENTPLMLAVLARRRRLVAYLMKAGAD  191 (373)
T ss_dssp             TTTTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCC--TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred             cccccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCC--CcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCC
Confidence            35677788 68999999999999988887776        55555  677888899999999999999999999999988


Q ss_pred             CcccCCCCCCCHHHHHHHcCCHHHHHHHHhcCC--CcccccCCCCCcHHHHHHHcC---CHHHHHHHHhCCccccc----
Q 011183           90 LSQTTGPSNATPLVSAATRGHTAVVNELLSKDG--GLLEISRSNGKNALHFAARQG---HVDVVKALLSKDPQLAR----  160 (491)
Q Consensus        90 l~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~--~~~~~~d~~g~tpLh~A~~~g---~~~iv~~Ll~~~~~~~~----  160 (491)
                      + +..|..|.||||+|+..|+.+++++|++.+.  .+++..|.+|.||||+|+..|   +.+++++|++++.++..    
T Consensus       192 ~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~  270 (373)
T 2fo1_E          192 P-TIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAA  270 (373)
T ss_dssp             S-CCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGG
T ss_pred             C-cccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCccccccc
Confidence            7 6778889999999999999999999998742  466778889999999999887   88999999998887632    


Q ss_pred             ---ccCCCCCCHHHHHHhCCCHHHHHHHHhcCcccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCH
Q 011183          161 ---RTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTA  237 (491)
Q Consensus       161 ---~~d~~g~t~Lh~Aa~~~~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~d~~G~t~  237 (491)
                         ..|..|+||||+|+..|+.+++++|++.+...++.+|..|+||||+|+..|+.+++++|++ .|++++.+|..|+||
T Consensus       271 ~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~-~gad~~~~d~~g~t~  349 (373)
T 2fo1_E          271 RKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQ-QGASVEAVDATDHTA  349 (373)
T ss_dssp             GTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHH-TTCCSSCCCSSSCCH
T ss_pred             ccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCccCCCCCCCCH
Confidence               2567899999999999999999999988733388889999999999999999999999998 799999999999999


Q ss_pred             HHHHhhCCCchhhHHHHHHHHHcCcc
Q 011183          238 LDIAEGLPSSEEASEIKDCLARCGAV  263 (491)
Q Consensus       238 L~~A~~~~~~~~~~~i~~~L~~~ga~  263 (491)
                      ||+|+..++.+    ++++|.++++.
T Consensus       350 l~~A~~~g~~~----iv~~Ll~~~a~  371 (373)
T 2fo1_E          350 RQLAQANNHHN----IVDIFDRCRPE  371 (373)
T ss_dssp             HHHHHHTTCHH----HHHHHHTTC--
T ss_pred             HHHHHHcCCHH----HHHHHHhcCcc
Confidence            99999877644    77888887764

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=3.1e-36  Score=298.56  Aligned_cols=261  Identities=26%  Similarity=0.319  Sum_probs=155.0

Q ss_pred             hhhhhccCCC-CCCHHHHHHHcCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCC
Q 011183           19 SSVVNEVNEL-GETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPS   97 (491)
Q Consensus        19 ~~~l~~~~~~-g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~   97 (491)
                      ++++|.++.+ |.||||+|+..|+.++|++|+++|++  ++..+..+.+|++.++..++..++..+++.++++ +..|..
T Consensus        48 Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~d~~  124 (337)
T 4g8k_A           48 GANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD--PVLRKKNGATPFILAAIAGSVKLLKLFLSKGADV-NECDFY  124 (337)
T ss_dssp             TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC--TTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCBCTT
T ss_pred             CCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCc--hhhhccCCCchhHHHHhcccchhhHHhhhccchh-hhhccC
Confidence            4455544432 55555555555555555555554443  1222333333333333333333333333333333 445667


Q ss_pred             CCCHHHHHHHcCCHHHHHHHHhcCCCc---------ccccCCCCCcHHHHHHHcCCHHHHHHHHhC-CcccccccCCCCC
Q 011183           98 NATPLVSAATRGHTAVVNELLSKDGGL---------LEISRSNGKNALHFAARQGHVDVVKALLSK-DPQLARRTDKKGQ  167 (491)
Q Consensus        98 g~tpL~~A~~~g~~~~v~~LL~~~~~~---------~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~-~~~~~~~~d~~g~  167 (491)
                      |.||||+|+..|+.+++++|++.+...         ....+..|.||||+|+..|+.+++++|+++ +.++ +..|..|.
T Consensus       125 g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~-n~~d~~g~  203 (337)
T 4g8k_A          125 GFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADV-NACDNMGR  203 (337)
T ss_dssp             CCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCT-TCCCTTSC
T ss_pred             CCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCc-CccCCCCC
Confidence            777777777777777777777663221         123345677777777777777777777753 5554 66677777


Q ss_pred             CHHHHHHhCCC----HHHHHHHHhcCcccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhh
Q 011183          168 TALHMAVKGQS----CEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEG  243 (491)
Q Consensus       168 t~Lh~Aa~~~~----~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~d~~G~t~L~~A~~  243 (491)
                      |+||.++..+.    .+++++|+++|++ ++.+|..|+||||+|+..|+.++++.|++..|++++.+|.+|+||||+|+.
T Consensus       204 t~l~~~~~~~~~~~~~~i~~lLl~~gad-~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~  282 (337)
T 4g8k_A          204 NALIHALLSSDDSDVEAITHLLLDHGAD-VNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVE  282 (337)
T ss_dssp             CHHHHHHHHSCTTTHHHHHHHHHHTTCC-TTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHH
T ss_pred             cHHHHHHHHcCcccHHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHHH
Confidence            77776664332    3466777777777 667777777777777777777777777776677777777777777777777


Q ss_pred             CCCchhhHHHHHHHHHcCccccccCCCchHHHHHHHHHhhhhhhhhhHHh
Q 011183          244 LPSSEEASEIKDCLARCGAVRANELNQPRDELRKTVTQIKKDVHTQLEQT  293 (491)
Q Consensus       244 ~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~  293 (491)
                      .++.    +++++|+++|+..+...     ++..+......++.+.|.+.
T Consensus       283 ~g~~----~iv~~Ll~~GAd~n~~~-----~L~~A~~~~~~~iv~~Ll~~  323 (337)
T 4g8k_A          283 LKLK----KIAELLCKRGASTDCGD-----LVMTARRNYDHSLVKVLLSH  323 (337)
T ss_dssp             TTCH----HHHHHHHTTSCSSTTCC-----HHHHHHHTTCHHHHHHHHHT
T ss_pred             cCCH----HHHHHHHHCCCCCCCCC-----HHHHHHHcCCHHHHHHHHHC
Confidence            6553    36677777777654332     45555555555555555543

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=6.5e-37  Score=303.97  Aligned_cols=267  Identities=25%  Similarity=0.263  Sum_probs=232.6

Q ss_pred             chhhhhccCCCCCCHHHHHHHcCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCC
Q 011183           18 RSSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPS   97 (491)
Q Consensus        18 ~~~~l~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~   97 (491)
                      +....+..+..|.|+||.|++.|+.+.++.|+... +.+++..|..|.||||+|+..|+.+++++|+++|+++ +..|..
T Consensus        13 ~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~ll~~~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~   90 (351)
T 3utm_A           13 PSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPL-NVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADV-HAKDKG   90 (351)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHCCTT-TTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTT
T ss_pred             CceeeeeeccccchhHHHHHHcCCHHHHHHHHHhc-CCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCC
Confidence            45566677888999999999999999999999852 3446788999999999999999999999999999997 678899


Q ss_pred             CCCHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCCHHHHHH---
Q 011183           98 NATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAV---  174 (491)
Q Consensus        98 g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa---  174 (491)
                      |.||||+|+..|+.+++++|++. +.+++..|..|.||||+|+..|+.+++++|++++.++ +..+..|.||+|+|+   
T Consensus        91 g~t~L~~A~~~g~~~iv~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~~~l~~a~~~~  168 (351)
T 3utm_A           91 GLVPLHNACSYGHYEVTELLLKH-GACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADP-TLVNCHGKSAVDMAPTPE  168 (351)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHCSSHH
T ss_pred             CCcHHHHHHHCCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-ccccCCCCcchHHHhhhh
Confidence            99999999999999999999998 6678889999999999999999999999999999987 778999999988764   


Q ss_pred             ------------------hCCCHHHHHHHHhcCcccccCCCCCCChHHHHHHHc---CcHHHHHHHhcCCCCCcccccCC
Q 011183          175 ------------------KGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRK---KRTEIVTELLSLPDTNVNALTRD  233 (491)
Q Consensus       175 ------------------~~~~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~---~~~~iv~~Ll~~~g~~~~~~d~~  233 (491)
                                        ..++.+.++.++..... ....+..|.||||+|+..   ++.+++++|++ .|++++.+|..
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~-~g~~~~~~~~~  246 (351)
T 3utm_A          169 LRERLTYEFKGHSLLQAAREADLAKVKKTLALEII-NFKQPQSHETALHCAVASLHPKRKQVAELLLR-KGANVNEKNKD  246 (351)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCT-TCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHH-TTCCTTCCCTT
T ss_pred             hHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcc-cccCCCCCCCHHHHHHHHhCccHHHHHHHHHH-cCCCcCCcCCC
Confidence                              45666666666666544 445678899999999999   66899999999 89999999999


Q ss_pred             CCCHHHHHhhCCCchhhHHHHHHHHHcCccccccCCCchHHHHHHHHHhhhhhhhhhHHhh
Q 011183          234 HKTALDIAEGLPSSEEASEIKDCLARCGAVRANELNQPRDELRKTVTQIKKDVHTQLEQTR  294 (491)
Q Consensus       234 G~t~L~~A~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~  294 (491)
                      |.||||+|+..++.    ++++.|++.|+..+.....+.+++..+......++.+.|.+.+
T Consensus       247 g~t~L~~A~~~g~~----~~v~~Ll~~ga~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g  303 (351)
T 3utm_A          247 FMTPLHVAAERAHN----DVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYG  303 (351)
T ss_dssp             CCCHHHHHHHTTCH----HHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred             CCCHHHHHHHcCCH----HHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcC
Confidence            99999999998765    4888999999998877778888999998888888877776653

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=1.3e-36  Score=285.22  Aligned_cols=233  Identities=26%  Similarity=0.364  Sum_probs=210.7

Q ss_pred             hhccCCCCCCHHHHHHHcCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCCH
Q 011183           22 VNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATP  101 (491)
Q Consensus        22 l~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~tp  101 (491)
                      ++..|..|.||||.|+..|+.+++++|++.+.+  ++..+..|.||||+|+..|+.+++++|++++++.....+..|.||
T Consensus         2 ~~~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~   79 (240)
T 3eu9_A            2 MTHIDDYSTWDIVKATQYGIYERCRELVEAGYD--VRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTP   79 (240)
T ss_dssp             CCCCSCGGGCCHHHHHHTTCHHHHHHHHHTTCC--TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCH
T ss_pred             ccccccccchHHHHHHHcCChHHHHHHHHcCCC--cCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCCh
Confidence            466799999999999999999999999998866  677889999999999999999999999999999877777789999


Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCCHHHHHHhCCC-HH
Q 011183          102 LVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQS-CE  180 (491)
Q Consensus       102 L~~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~~-~~  180 (491)
                      ||+|+..|+.+++++|++. +.+++..+..|.||||.|+..|+.+++++|++++.++ +..|..|.||||+|+..++ .+
T Consensus        80 L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~-~~~~~~g~t~l~~a~~~~~~~~  157 (240)
T 3eu9_A           80 LHWATRQGHLSMVVQLMKY-GADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDV-DMMDQNGMTPLMWAAYRTHSVD  157 (240)
T ss_dssp             HHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHCCSST
T ss_pred             hHHHHHcCCHHHHHHHHHc-CCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCc-cccCCCCCcHHHHHHHhCChHH
Confidence            9999999999999999988 6667888999999999999999999999999999987 7789999999999996555 89


Q ss_pred             HHHHHHhcCcccccCCCC-CCChHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCchhhHHHHHHHHH
Q 011183          181 VVKLLLEADAAIVMLPDK-FGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLAR  259 (491)
Q Consensus       181 iv~~Ll~~~~~~~~~~d~-~G~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~d~~G~t~L~~A~~~~~~~~~~~i~~~L~~  259 (491)
                      ++++|++.+++ ++..+. .|+||||+|+..|+.+++++|++ .|++++.+|..|.||+|+|...++.+    +++.|.+
T Consensus       158 ~~~~L~~~~~~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~l~~A~~~~~~~----~v~~L~~  231 (240)
T 3eu9_A          158 PTRLLLTFNVS-VNLGDKYHKNTALHWAVLAGNTTVISLLLE-AGANVDAQNIKGESALDLAKQRKNVW----MINHLQE  231 (240)
T ss_dssp             THHHHHHTTCC-TTCCCTTTCCCHHHHHHHHTCHHHHHHHHH-HTCCTTCBCTTSCBHHHHHHHTTCHH----HHHHHHH
T ss_pred             HHHHHHhcCCC-cchhhccCCCcHHHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHcCcHH----HHHHHHH
Confidence            99999999999 666665 89999999999999999999999 79999999999999999999987655    7777777


Q ss_pred             cCccc
Q 011183          260 CGAVR  264 (491)
Q Consensus       260 ~ga~~  264 (491)
                      .++..
T Consensus       232 ~~~~~  236 (240)
T 3eu9_A          232 ARQAK  236 (240)
T ss_dssp             HC---
T ss_pred             hhhcc
Confidence            76643

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=7.8e-36  Score=295.69  Aligned_cols=259  Identities=25%  Similarity=0.270  Sum_probs=222.7

Q ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHhccCccccccCC-CCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCCHHHH
Q 011183           26 NELGETALFTAADKGHIEVVNELLKYSTKEGLTRKN-RSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVS  104 (491)
Q Consensus        26 ~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~-~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~  104 (491)
                      +.+|+||||.||+.|++++|++||+.|++  ++..+ ..|.||||+|+..|+.++|++|+++|+++ +..+..+.+|++.
T Consensus        22 ~~~~~t~L~~Av~~g~~~~V~~LL~~Gad--vn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~-~~~~~~~~~~~~~   98 (337)
T 4g8k_A           22 AVEDNHLLIKAVQNEDVDLVQQLLEGGAN--VNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADP-VLRKKNGATPFIL   98 (337)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHTCC--TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHH
T ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHCCCC--CCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCch-hhhccCCCchhHH
Confidence            33578999999999999999999999877  45555 45999999999999999999999999998 6788999999999


Q ss_pred             HHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhCCcccc---------cccCCCCCCHHHHHHh
Q 011183          105 AATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLA---------RRTDKKGQTALHMAVK  175 (491)
Q Consensus       105 A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~---------~~~d~~g~t~Lh~Aa~  175 (491)
                      ++..++.+++..+++. +.+++..|..|.||||+|+..|+.+++++|+++++++.         ...+..|.||||+|++
T Consensus        99 ~~~~~~~~~~~~~~~~-~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~  177 (337)
T 4g8k_A           99 AAIAGSVKLLKLFLSK-GADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAE  177 (337)
T ss_dssp             HHHHTCHHHHHHHHTT-TCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHH
T ss_pred             HHhcccchhhHHhhhc-cchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHH
Confidence            9999999999999987 56788899999999999999999999999999987653         2345679999999999


Q ss_pred             CCCHHHHHHHHhc-CcccccCCCCCCChHHHHHHHcCc----HHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCchhh
Q 011183          176 GQSCEVVKLLLEA-DAAIVMLPDKFGNTALHVATRKKR----TEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEA  250 (491)
Q Consensus       176 ~~~~~iv~~Ll~~-~~~~~~~~d~~G~TpLh~A~~~~~----~~iv~~Ll~~~g~~~~~~d~~G~t~L~~A~~~~~~~~~  250 (491)
                      .|+.+++++|++. |++ ++.+|..|.||||.++..+.    ..++++|++ .|+++|.+|..|+||||+|+..+..+  
T Consensus       178 ~g~~~~v~~LL~~~gad-~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~-~gad~n~~d~~g~t~L~~a~~~~~~~--  253 (337)
T 4g8k_A          178 KGHVEVLKILLDEMGAD-VNACDNMGRNALIHALLSSDDSDVEAITHLLLD-HGADVNVRGERGKTPLILAVEKKHLG--  253 (337)
T ss_dssp             HTCHHHHHHHHHHSCCC-TTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHH-TTCCTTCCCGGGCCHHHHHHHTTCHH--
T ss_pred             CCCHHHHHHHHhccCCC-cCccCCCCCcHHHHHHHHcCcccHHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHHhhhhH--
Confidence            9999999999965 777 88999999999999886543    467888888 89999999999999999999987654  


Q ss_pred             HHHHHHHHH-cCccccccCCCchHHHHHHHHHhhhhhhhhhHHhh
Q 011183          251 SEIKDCLAR-CGAVRANELNQPRDELRKTVTQIKKDVHTQLEQTR  294 (491)
Q Consensus       251 ~~i~~~L~~-~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~  294 (491)
                        +++.|+. .|+..+.....+++++..+......++.+.|.+.+
T Consensus       254 --~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~G  296 (337)
T 4g8k_A          254 --LVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRG  296 (337)
T ss_dssp             --HHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTS
T ss_pred             --HHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence              5555665 46777667777888999998888888887776543

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=5.9e-36  Score=289.71  Aligned_cols=244  Identities=19%  Similarity=0.231  Sum_probs=192.3

Q ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHhccCc---------cccccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCC
Q 011183           25 VNELGETALFTAADKGHIEVVNELLKYSTK---------EGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTG   95 (491)
Q Consensus        25 ~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~---------~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~   95 (491)
                      -...|.|+||+|+..|+.+.+..++..+..         ..+...|..|.||||+|+..|+.+++++|+++++++ +..|
T Consensus        11 ~~~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~-~~~~   89 (285)
T 3d9h_A           11 SSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAV-NIIT   89 (285)
T ss_dssp             -------------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCS-CEEC
T ss_pred             cchHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCcC
Confidence            356799999999999998877777654321         225668889999999999999999999999999997 6788


Q ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCCHHHHHHh
Q 011183           96 PSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVK  175 (491)
Q Consensus        96 ~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~  175 (491)
                      ..|.||||+|+..|+.+++++|++. +.+++..|.+|.||||+|+..|+.+++++|+++++++.  .+..|.||||+|+.
T Consensus        90 ~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~g~t~L~~A~~  166 (285)
T 3d9h_A           90 ADHVSPLHEACLGGHLSCVKILLKH-GAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQ--PESDLASPIHEAAR  166 (285)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHT-TCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSS--CSCTTSCHHHHHHH
T ss_pred             CCCCCHHHHHHHCCcHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCC--CCCCCCCHHHHHHH
Confidence            9999999999999999999999998 67788899999999999999999999999999998873  34569999999999


Q ss_pred             CCCHHHHHHHHhcCcccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCchhhHHHHH
Q 011183          176 GQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKD  255 (491)
Q Consensus       176 ~~~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~d~~G~t~L~~A~~~~~~~~~~~i~~  255 (491)
                      .|+.+++++|++.+++ ++.+|..|+||||+|+..|+.+++++|++ .|++++. |..|.||||+|+..++.    ++++
T Consensus       167 ~g~~~~v~~Ll~~g~~-~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~-~~~g~t~L~~A~~~~~~----~~v~  239 (285)
T 3d9h_A          167 RGHVECVNSLIAYGGN-IDHKISHLGTPLYLACENQQRACVKKLLE-SGADVNQ-GKGQDSPLHAVVRTASE----ELAC  239 (285)
T ss_dssp             HTCHHHHHHHHHTTCC-TTCCBTTTBCHHHHHHHTTCHHHHHHHHH-TTCCTTC-CBTTBCHHHHHHHTTCH----HHHH
T ss_pred             cCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHcCcHHHHHHHHH-CCCCCCC-CCCCCCHHHHHHHcCCH----HHHH
Confidence            9999999999999998 78899999999999999999999999999 7999995 89999999999998765    4888


Q ss_pred             HHHHcCccccccCCCchHHHHHHH
Q 011183          256 CLARCGAVRANELNQPRDELRKTV  279 (491)
Q Consensus       256 ~L~~~ga~~~~~~~~~~~~l~~~~  279 (491)
                      +|++.|+........+.+++..+.
T Consensus       240 ~Ll~~gad~~~~d~~g~t~l~~A~  263 (285)
T 3d9h_A          240 LLMDFGADTQAKNAEGKRPVELVP  263 (285)
T ss_dssp             HHHHTTCCTTCCCTTSCCGGGGSC
T ss_pred             HHHHCCCCCCCcCCCCCCHHHHhc
Confidence            999999987766666666665443

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=7.5e-36  Score=277.61  Aligned_cols=216  Identities=21%  Similarity=0.268  Sum_probs=143.4

Q ss_pred             CCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHh
Q 011183           40 GHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLS  119 (491)
Q Consensus        40 g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~~g~~~~v~~LL~  119 (491)
                      |+.+++++|++.+.+.+ ...|..|.||||+|+..|+.+++++|+++++++ +..|..|.||||+|+..|+.+++++|++
T Consensus         2 g~~~~i~~Ll~~g~~~~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~   79 (223)
T 2f8y_A            2 DAPAVISDFIYQGASLH-NQTDRTGETALHLAARYSRSDAAKRLLEASADA-NIQDNMGRTPLHAAVSADAQGVFQILIR   79 (223)
T ss_dssp             ---CCEETTEETTCCTT-CCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             CcHHHHHHHHHcCCCcc-cccCCCCCchHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            55666666666655421 233566777777777777777777777776665 4556667777777777777777777776


Q ss_pred             cCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCCHHHHHHhCCCHHHHHHHHhcCcccccCCCCC
Q 011183          120 KDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKF  199 (491)
Q Consensus       120 ~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~~~~iv~~Ll~~~~~~~~~~d~~  199 (491)
                      .++...+..+..|.||||+|+..|+.+++++|+++++++ +..|..|+||||+|+..++.+++++|++.|++ ++.+|..
T Consensus        80 ~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~  157 (223)
T 2f8y_A           80 NRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADV-NAVDDLGKSALHWAAAVNNVDAAVVLLKNGAN-KDMQNNR  157 (223)
T ss_dssp             BTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTT
T ss_pred             cCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCC-cCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCC
Confidence            655556666667777777777777777777777766665 55566677777777777777777777777666 5666677


Q ss_pred             CChHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCchhhHHHHHHHHHcCccc
Q 011183          200 GNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVR  264 (491)
Q Consensus       200 G~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~d~~G~t~L~~A~~~~~~~~~~~i~~~L~~~ga~~  264 (491)
                      |.||||+|+..++.+++++|++ .|++++.+|..|.||+|+|...++.    +++++|.++|+..
T Consensus       158 g~t~L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~A~~~~~~----~i~~~L~~~g~~~  217 (223)
T 2f8y_A          158 EETPLFLAAREGSYETAKVLLD-HFANRDITDHMDRLPRDIAQERMHH----DIVRLLDEYNLVR  217 (223)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTCCCHHHHHHHTTCH----HHHHHHHHTTCSS
T ss_pred             CcCHHHHHHHcCCHHHHHHHHH-cCCCCccccccCCCHHHHHHHhcch----HHHHHHHHcCCCc
Confidence            7777777777777777777776 5677777777777777777665543    3666666666654

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=1.2e-36  Score=306.01  Aligned_cols=261  Identities=20%  Similarity=0.209  Sum_probs=220.8

Q ss_pred             hhhhccCCCCCCHHHHHHHcCCHHHHHHHHhccCccccccCC-CCCChHHHHHHHcCcHHHHHHHH--------hcCCCC
Q 011183           20 SVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKN-RSGFDPLHIAAVQGHHAIVQVLL--------DHDPSL   90 (491)
Q Consensus        20 ~~l~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~-~~g~TpLh~A~~~g~~~iv~~Ll--------~~~~~l   90 (491)
                      ...+..|..|.||||.|+..|+ ++++.|+..    .++..| ..|.||||+|+..|+.+++++|+        +.|+++
T Consensus        85 ~~~~~~~~~g~t~L~~Aa~~~~-~~~~~L~~~----~~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~v  159 (373)
T 2fo1_E           85 QIPTEPEPESPIKLHTEAAGSY-AITEPITRE----SVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADV  159 (373)
T ss_dssp             ---------CCCHHHHHHHSSS-CCCSCCSTT----TTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCT
T ss_pred             ccccCCCCCCccHHHHHhcCCc-hHHHHhccc----cccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCC
Confidence            3456789999999999999665 787777652    356666 78999999999999998888776        788887


Q ss_pred             cccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhCC---cccccccCCCCC
Q 011183           91 SQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKD---PQLARRTDKKGQ  167 (491)
Q Consensus        91 ~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~---~~~~~~~d~~g~  167 (491)
                       +..|..|.||||+|+..|+.+++++|++. +.+++..|.+|.||||+|+..|+.+++++|++++   .++ +..|..|.
T Consensus       160 -n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~-ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~-~~~d~~g~  236 (373)
T 2fo1_E          160 -NAMDCDENTPLMLAVLARRRRLVAYLMKA-GADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDI-EELDRNGM  236 (373)
T ss_dssp             -TCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTT-SCCCTTSC
T ss_pred             -cCCCCCCCCHHHHHHHcChHHHHHHHHHC-CCCCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccCh-hhcCCCCC
Confidence             67899999999999999999999999998 6678889999999999999999999999999987   454 77899999


Q ss_pred             CHHHHHHhCC---CHHHHHHHHhcCcccccC--------CCCCCChHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCC
Q 011183          168 TALHMAVKGQ---SCEVVKLLLEADAAIVML--------PDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKT  236 (491)
Q Consensus       168 t~Lh~Aa~~~---~~~iv~~Ll~~~~~~~~~--------~d~~G~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~d~~G~t  236 (491)
                      ||||+|+..+   +.+++++|++.|++ ++.        .|..|+||||+|+..|+.+++++|++..+++++.+|..|.|
T Consensus       237 t~L~~A~~~~~~~~~~~v~~Ll~~g~~-~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~T  315 (373)
T 2fo1_E          237 TALMIVAHNEGRDQVASAKLLVEKGAK-VDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKT  315 (373)
T ss_dssp             CHHHHHHHSCSTTHHHHHHHHHHHTCC-SSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCC
T ss_pred             CHHHHHHHhCCcchHHHHHHHHHCCCC-cccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCC
Confidence            9999999988   89999999999988 443        67799999999999999999999998667999999999999


Q ss_pred             HHHHHhhCCCchhhHHHHHHHHHcCccccccCCCchHHHHHHHHHhhhhhhhhhHHh
Q 011183          237 ALDIAEGLPSSEEASEIKDCLARCGAVRANELNQPRDELRKTVTQIKKDVHTQLEQT  293 (491)
Q Consensus       237 ~L~~A~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~  293 (491)
                      |||+|+..++.    +++++|++.|+..+.....+.+++..+....+.++.+.|.+.
T Consensus       316 pL~~A~~~g~~----~iv~~Ll~~gad~~~~d~~g~t~l~~A~~~g~~~iv~~Ll~~  368 (373)
T 2fo1_E          316 PIMLAAQEGRI----EVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRC  368 (373)
T ss_dssp             HHHHHHHHTCH----HHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHTT
T ss_pred             HHHHHHHcCCH----HHHHHHHHcCCCccCCCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence            99999987664    488999999998887777888889888887777777666543

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=2.2e-36  Score=294.11  Aligned_cols=212  Identities=25%  Similarity=0.346  Sum_probs=193.0

Q ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCCHHHHH
Q 011183           26 NELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSA  105 (491)
Q Consensus        26 ~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A  105 (491)
                      +.+|.||||.|+..|+.++|++|++.|.+  ++..|..|.||||+|+..|+.+++++|+++|+++ +..|..|.||||+|
T Consensus        37 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~--~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~tpL~~A  113 (299)
T 1s70_B           37 KFDDGAVFLAACSSGDTEEVLRLLERGAD--INYANVDGLTALHQACIDDNVDMVKFLVENGANI-NQPDNEGWIPLHAA  113 (299)
T ss_dssp             EECHHHHHHHHHHHTCHHHHHHHHHHCCC--TTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHH
T ss_pred             ccCCccHHHHHHHcCCHHHHHHHHHcCCC--CcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCcHHHHH
Confidence            44678999999999999999999998876  6778999999999999999999999999999997 67889999999999


Q ss_pred             HHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhCCc-c-------------------------cc
Q 011183          106 ATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDP-Q-------------------------LA  159 (491)
Q Consensus       106 ~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~-~-------------------------~~  159 (491)
                      +..|+.+++++|++. +.+++..|.+|.||||+|+..|+.++++.++.... +                         ..
T Consensus       114 ~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  192 (299)
T 1s70_B          114 ASCGYLDIAEYLISQ-GAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHIND  192 (299)
T ss_dssp             HHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred             HHcCCHHHHHHHHhC-CCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcch
Confidence            999999999999998 56788899999999999999999999988776422 1                         12


Q ss_pred             cccCCCCCCHHHHHHhCCCHHHHHHHHhcCcccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHH
Q 011183          160 RRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALD  239 (491)
Q Consensus       160 ~~~d~~g~t~Lh~Aa~~~~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~d~~G~t~L~  239 (491)
                      ...+..|.||||+|+..|+.+++++|++.|++ ++.+|..|+||||+|+..|+.+++++|++ .|++++.+|..|+||+|
T Consensus       193 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d-~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~-~gad~~~~d~~g~t~l~  270 (299)
T 1s70_B          193 VRHAKSGGTALHVAAAKGYTEVLKLLIQARYD-VNIKDYDGWTPLHAAAHWGKEEACRILVE-NLCDMEAVNKVGQTAFD  270 (299)
T ss_dssp             CCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCTTT
T ss_pred             hhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCC-CCCcCCCCCcHHHHHHhcCCHHHHHHHHH-cCCCCCCcCCCCCCHHH
Confidence            23567899999999999999999999999998 88899999999999999999999999999 79999999999999999


Q ss_pred             HHhh
Q 011183          240 IAEG  243 (491)
Q Consensus       240 ~A~~  243 (491)
                      +|..
T Consensus       271 ~A~~  274 (299)
T 1s70_B          271 VADE  274 (299)
T ss_dssp             SCCS
T ss_pred             HHHH
Confidence            9964

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=9e-36  Score=288.43  Aligned_cols=225  Identities=20%  Similarity=0.181  Sum_probs=201.5

Q ss_pred             hhhccCCCCCCHHHHHHHcCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCC
Q 011183           21 VVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNAT  100 (491)
Q Consensus        21 ~l~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~t  100 (491)
                      .++.+|.+|.||||+|+..|+.+++++|++.|.+.  +..  +|.||||+|+..|+.+++++|+++|+++ +..|..|.|
T Consensus        23 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~--~~~--~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~d~~g~t   97 (285)
T 3kea_A           23 DTFKADVHGHSASYYAIADNNVRLVCTLLNAGALK--NLL--ENEFPLHQAATLEDTKIVKILLFSGLDD-SQFDDKGNT   97 (285)
T ss_dssp             TTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGG--SCC--TTCCHHHHHTTSSSCHHHHHHHHTTCCT-TCCCTTSCC
T ss_pred             CCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC--CCC--CCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCc
Confidence            68999999999999999999999999999998763  434  4899999999999999999999999997 678899999


Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCcccccCCCC-CcHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCCHHHHHHhCCCH
Q 011183          101 PLVSAATRGHTAVVNELLSKDGGLLEISRSNG-KNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSC  179 (491)
Q Consensus       101 pL~~A~~~g~~~~v~~LL~~~~~~~~~~d~~g-~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~~~  179 (491)
                      |||+|+..|+.+++++|++. +.+++..+..| .||||+|+..|+.+++++|++++++...  ...|+||||+|+..|+.
T Consensus        98 ~L~~A~~~g~~~~v~~Ll~~-ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--~~~g~t~L~~A~~~g~~  174 (285)
T 3kea_A           98 ALYYAVDSGNMQTVKLFVKK-NWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFD--LAILLSCIHITIKNGHV  174 (285)
T ss_dssp             HHHHHHHTTCHHHHHHHHHH-CGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCC--CSTHHHHHHHHHHTTCH
T ss_pred             HHHHHHHcCCHHHHHHHHhc-CCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCcccc--ccCCccHHHHHHHcChH
Confidence            99999999999999999998 67788999999 8999999999999999999999987622  12899999999999999


Q ss_pred             HHHHHHHhcCcccccCCCCCCChH-HHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCchhhHHHHHHHH
Q 011183          180 EVVKLLLEADAAIVMLPDKFGNTA-LHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLA  258 (491)
Q Consensus       180 ~iv~~Ll~~~~~~~~~~d~~G~Tp-Lh~A~~~~~~~iv~~Ll~~~g~~~~~~d~~G~t~L~~A~~~~~~~~~~~i~~~L~  258 (491)
                      +++++|+++|++ ++.+|..|+|| ||+|+..++.+++++|++ .|++++..|.       .|...+    ..+++++|+
T Consensus       175 ~~v~~Ll~~gad-~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~-~gad~~~~~~-------~a~~~~----~~~iv~~Ll  241 (285)
T 3kea_A          175 DMMILLLDYMTS-TNTNNSLLFIPDIKLAIDNKDIEMLQALFK-YDINIYSANL-------ENVLLD----DAEIAKMII  241 (285)
T ss_dssp             HHHHHHHHHHHH-TCTTCCCBCCTTHHHHHHHTCHHHHHHHTT-SCBCSTTTTG-------GGGTTT----CHHHHHHHH
T ss_pred             HHHHHHHHcCCC-CCcccCCCCChHHHHHHHcCCHHHHHHHHH-cCCCCCCCCh-------hhhhcC----CHHHHHHHH
Confidence            999999999999 88899999998 999999999999999999 7999999884       233333    356888999


Q ss_pred             HcCccccc
Q 011183          259 RCGAVRAN  266 (491)
Q Consensus       259 ~~ga~~~~  266 (491)
                      ++|+....
T Consensus       242 ~~g~~~~~  249 (285)
T 3kea_A          242 EKHVEYKS  249 (285)
T ss_dssp             HHHHHHTT
T ss_pred             HcCCCCCC
Confidence            98886543

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=8.8e-37  Score=286.80  Aligned_cols=218  Identities=23%  Similarity=0.282  Sum_probs=190.5

Q ss_pred             hccCCCCCCHHHHHHHcCCHHHHHHHHhccCcc--ccccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCC
Q 011183           23 NEVNELGETALFTAADKGHIEVVNELLKYSTKE--GLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNAT  100 (491)
Q Consensus        23 ~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~--~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~t  100 (491)
                      +.+|.+|.||||+|+..|+.+++++|++.+...  +++..|..|.||||+|+..|+.+++++|+++|+++ +..|..|.|
T Consensus         2 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t   80 (236)
T 1ikn_D            2 QQLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDP-ELRDFRGNT   80 (236)
T ss_dssp             -----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCS-CCCCTTCCC
T ss_pred             CcCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCC
Confidence            457899999999999999999999999987542  47888999999999999999999999999999997 678899999


Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCC-----cccccCCCCCcHHHHHHHcCCHHHHHHHHhCCcccccccCC-CCCCHHHHHH
Q 011183          101 PLVSAATRGHTAVVNELLSKDGG-----LLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDK-KGQTALHMAV  174 (491)
Q Consensus       101 pL~~A~~~g~~~~v~~LL~~~~~-----~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~-~g~t~Lh~Aa  174 (491)
                      |||+|+..|+.+++++|++.+..     ..+..+..|.||||+|+..|+.+++++|+++++++ +..+. .|+||||+|+
T Consensus        81 ~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~~g~tpL~~A~  159 (236)
T 1ikn_D           81 PLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADV-NAQEPCNGRTALHLAV  159 (236)
T ss_dssp             HHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTTCCCHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCCHHHHHH
Confidence            99999999999999999998542     35678889999999999999999999999999998 56666 9999999999


Q ss_pred             hCCCHHHHHHHHhcCcccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCcc--cccCCCCCHHHHHhhC
Q 011183          175 KGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVN--ALTRDHKTALDIAEGL  244 (491)
Q Consensus       175 ~~~~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~~~~~iv~~Ll~~~g~~~~--~~d~~G~t~L~~A~~~  244 (491)
                      ..|+.+++++|+++|++ ++.+|..|.||||+|+..++.+++++|++ .|++..  ..+..|.||.+.+...
T Consensus       160 ~~~~~~~v~~Ll~~ga~-~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~-~ga~~~~~~~~~~~~~~~~~~~~~  229 (236)
T 1ikn_D          160 DLQNPDLVSLLLKCGAD-VNRVTYQGYSPYQLTWGRPSTRIQQQLGQ-LTLENLQMLPESEDEESYDTESEF  229 (236)
T ss_dssp             HTTCHHHHHHHHTTTCC-SCCCCTTCCCGGGGCTTSSCHHHHHHHHT-TSCGGGSSCCCCCTTTCCCCC---
T ss_pred             HcCCHHHHHHHHHcCCC-CCcccCCCCCHHHHHHccCchHHHHHHHH-cchhhhhcCCccchHHHHhhhccc
Confidence            99999999999999999 88899999999999999999999999999 788776  7899999998876554

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=1.6e-35  Score=281.38  Aligned_cols=230  Identities=22%  Similarity=0.239  Sum_probs=177.7

Q ss_pred             cccCCCCCChHHHHHHHcC-------------cHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCC
Q 011183           57 LTRKNRSGFDPLHIAAVQG-------------HHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGG  123 (491)
Q Consensus        57 l~~~~~~g~TpLh~A~~~g-------------~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~  123 (491)
                      ++.+|.+|.||||+|+..|             +.+++++|+++|+++....|..|.||||+|+..|+.+++++|++. +.
T Consensus         3 vn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-g~   81 (253)
T 1yyh_A            3 VNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEA-SA   81 (253)
T ss_dssp             -------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHT-TC
T ss_pred             CCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHc-CC
Confidence            5678999999999999987             899999999999999777899999999999999999999999998 66


Q ss_pred             cccccCCCCCcHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCCHHHHHHhCCCHHHHHHHHhcCcccccCCCCCCChH
Q 011183          124 LLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTA  203 (491)
Q Consensus       124 ~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~~~~iv~~Ll~~~~~~~~~~d~~G~Tp  203 (491)
                      +++..|..|.||||+|+..|+.+++++|++.++...+..|..|.||||+|+..++.+++++|++.|++ ++.+|..|+||
T Consensus        82 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~d~~g~t~  160 (253)
T 1yyh_A           82 DANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHAD-VNAVDDLGKSA  160 (253)
T ss_dssp             CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCC-TTCBCTTSCBH
T ss_pred             CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCC-CCCcCCCCCCH
Confidence            78889999999999999999999999999999855588899999999999999999999999999998 78899999999


Q ss_pred             HHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCchhhHHHHHHHHHcCccccccCCCchHHHHHHHHHhh
Q 011183          204 LHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVRANELNQPRDELRKTVTQIK  283 (491)
Q Consensus       204 Lh~A~~~~~~~iv~~Ll~~~g~~~~~~d~~G~t~L~~A~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~l~~~~~~~~  283 (491)
                      ||+|+..|+.+++++|++ .|++++.+|..|.||||+|+..++.    ++++.|++.|+........+.+++..+....+
T Consensus       161 L~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~tpL~~A~~~~~~----~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~  235 (253)
T 1yyh_A          161 LHWAAAVNNVDAAVVLLK-NGANKDMQNNREETPLFLAAREGSY----ETAKVLLDHFANRDITDHMDRLPRDIAQERMH  235 (253)
T ss_dssp             HHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHHTCH----HHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred             HHHHHHcCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHCCCH----HHHHHHHHcCCCccccccCCCCHHHHHHHcCC
Confidence            999999999999999999 7999999999999999999987654    48899999999988777788889988888888


Q ss_pred             hhhhhhhHHh
Q 011183          284 KDVHTQLEQT  293 (491)
Q Consensus       284 ~~~~~~l~~~  293 (491)
                      .++.+.+.+.
T Consensus       236 ~~i~~~l~~~  245 (253)
T 1yyh_A          236 HDIVRLLDLE  245 (253)
T ss_dssp             HHHHHHHHC-
T ss_pred             HHHHHHHHHH
Confidence            8777766543

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=5.8e-35  Score=273.11  Aligned_cols=212  Identities=26%  Similarity=0.343  Sum_probs=196.4

Q ss_pred             hhhhHHHHHhhchhhhhccCCCCCCHHHHHHHcCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhc
Q 011183            7 GAEFDTEVAEIRSSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDH   86 (491)
Q Consensus         7 ~~~~~~~~~~~~~~~l~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~   86 (491)
                      ..+....+++..+..++..|.+|.||||+|+..|+.+++++|++.+.+  ++..|..|.||||+|+..|+.+++++|+++
T Consensus        18 ~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~   95 (231)
T 3aji_A           18 KLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP--VNDKDDAGWSPLHIAASAGXDEIVKALLVK   95 (231)
T ss_dssp             CHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC--SCCCCTTSCCHHHHHHHHTCHHHHHHHHHT
T ss_pred             CHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCC--CCCcCCCCCCHHHHHHHcCHHHHHHHHHHc
Confidence            345677788888889999999999999999999999999999998765  677899999999999999999999999999


Q ss_pred             CCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhCCcccccccCCCC
Q 011183           87 DPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKG  166 (491)
Q Consensus        87 ~~~l~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g  166 (491)
                      ++++ +..|..|.||||+|+..|+.+++++|++. +.+++..|..|.||||+|+..|+.+++++|++.+.++ +..|..|
T Consensus        96 g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g  172 (231)
T 3aji_A           96 GAHV-NAVNQNGCTPLHYAASKNRHEIAVMLLEG-GANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKAST-NIQDTEG  172 (231)
T ss_dssp             TCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTS
T ss_pred             CCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCc-cccCCCC
Confidence            9997 67889999999999999999999999988 5667889999999999999999999999999999987 7789999


Q ss_pred             CCHHHHHHhCCCHHHHHHHHhcCcccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCC
Q 011183          167 QTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDT  225 (491)
Q Consensus       167 ~t~Lh~Aa~~~~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~~~~~iv~~Ll~~~g~  225 (491)
                      +||||+|+..++.+++++|+++|++ ++.+|..|.||||+|+..++.+++++|++ .|+
T Consensus       173 ~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~i~~lL~~-~~a  229 (231)
T 3aji_A          173 NTPLHLACDEERVEEAKFLVTQGAS-IYIENKEEKTPLQVAKGGLGLILKRLAEG-EEA  229 (231)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHSCHHHHHHHHHHHHH-HHH
T ss_pred             CCHHHHHHHCCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHhhHHHHHHHHHcc-ccc
Confidence            9999999999999999999999999 78899999999999999999999999987 443

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=6.9e-35  Score=271.06  Aligned_cols=203  Identities=24%  Similarity=0.311  Sum_probs=187.0

Q ss_pred             hhhhh-ccCCCCCCHHHHHHHcCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCC
Q 011183           19 SSVVN-EVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPS   97 (491)
Q Consensus        19 ~~~l~-~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~   97 (491)
                      +..++ ..|.+|.||||+|+..|+.+++++|++.+.+  ++..|..|.||||+|+..|+.+++++|+++++......+..
T Consensus        14 g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~   91 (223)
T 2f8y_A           14 GASLHNQTDRTGETALHLAARYSRSDAAKRLLEASAD--ANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHD   91 (223)
T ss_dssp             TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC--TTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTT
T ss_pred             CCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCC--CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCC
Confidence            34444 4589999999999999999999999998766  57789999999999999999999999999998555788999


Q ss_pred             CCCHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCCHHHHHHhCC
Q 011183           98 NATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQ  177 (491)
Q Consensus        98 g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~  177 (491)
                      |.||||+|+..|+.+++++|++. +.+++..|..|.||||+|+..|+.+++++|++++.++ +..|..|.||||+|++.+
T Consensus        92 g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~  169 (223)
T 2f8y_A           92 GTTPLILAARLAVEGMLEDLINS-HADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANK-DMQNNREETPLFLAAREG  169 (223)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHT-TCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHT
T ss_pred             CCcHHHHHHHhCcHHHHHHHHHc-CCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCcCHHHHHHHcC
Confidence            99999999999999999999997 5678889999999999999999999999999999987 778999999999999999


Q ss_pred             CHHHHHHHHhcCcccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCc
Q 011183          178 SCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNV  227 (491)
Q Consensus       178 ~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~~~~~iv~~Ll~~~g~~~  227 (491)
                      +.+++++|+++|++ ++.+|..|.||||+|+..++.+++++|++ .|+..
T Consensus       170 ~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~i~~~L~~-~g~~~  217 (223)
T 2f8y_A          170 SYETAKVLLDHFAN-RDITDHMDRLPRDIAQERMHHDIVRLLDE-YNLVR  217 (223)
T ss_dssp             CHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHH-TTCSS
T ss_pred             CHHHHHHHHHcCCC-CccccccCCCHHHHHHHhcchHHHHHHHH-cCCCc
Confidence            99999999999998 78899999999999999999999999999 56653

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=1.2e-34  Score=278.83  Aligned_cols=217  Identities=24%  Similarity=0.311  Sum_probs=186.2

Q ss_pred             cccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCC--cccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCc
Q 011183           57 LTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSL--SQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKN  134 (491)
Q Consensus        57 l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l--~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~t  134 (491)
                      ++..|..|.||||+|+..|+.+++++|++++++.  .+..|..|.||||+|+..|+.+++++|+++ +.+++..|..|.|
T Consensus         2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~~~~g~t   80 (282)
T 1oy3_D            2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAA-GAGVLVAERGGHT   80 (282)
T ss_dssp             CCCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCSSCCCTTSCC
T ss_pred             CCccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCC
Confidence            4567899999999999999999999999998773  467889999999999999999999999998 6678889999999


Q ss_pred             HHHHHHHcCCHHHHHHHHhCCccc----------------------------------------------ccccCCCCCC
Q 011183          135 ALHFAARQGHVDVVKALLSKDPQL----------------------------------------------ARRTDKKGQT  168 (491)
Q Consensus       135 pLh~A~~~g~~~iv~~Ll~~~~~~----------------------------------------------~~~~d~~g~t  168 (491)
                      |||+|+..|+.+++++|++++++.                                              .+..|..|.|
T Consensus        81 pL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t  160 (282)
T 1oy3_D           81 ALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHT  160 (282)
T ss_dssp             HHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCC
T ss_pred             HHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcC
Confidence            999999999999999999987541                                              2556889999


Q ss_pred             HHHHHHhCCCHHHHHHHHhcCcccccCCCC-CCChHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCc
Q 011183          169 ALHMAVKGQSCEVVKLLLEADAAIVMLPDK-FGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSS  247 (491)
Q Consensus       169 ~Lh~Aa~~~~~~iv~~Ll~~~~~~~~~~d~-~G~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~d~~G~t~L~~A~~~~~~  247 (491)
                      |||+|+..|+.+++++|++.|++ ++.++. .|+||||+|+..|+.+++++|++ .|++++.+|..|+||||+|+..++.
T Consensus       161 ~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~-~gad~~~~d~~g~tpL~~A~~~~~~  238 (282)
T 1oy3_D          161 PLHVAVIHKDAEMVRLLRDAGAD-LNKPEPTCGRTPLHLAVEAQAASVLELLLK-AGADPTARMYGGRTPLGSALLRPNP  238 (282)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHTCC-TTCCCTTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHTSSCH
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCcCHHHHHHHcCCHHHHHHHHH-cCCCCcccccCCCCHHHHHHHcCCc
Confidence            99999999999999999999999 566664 59999999999999999999999 7999999999999999999988764


Q ss_pred             hhhHHHHHHHHHcCccccccCCCchHHHHHHHH
Q 011183          248 EEASEIKDCLARCGAVRANELNQPRDELRKTVT  280 (491)
Q Consensus       248 ~~~~~i~~~L~~~ga~~~~~~~~~~~~l~~~~~  280 (491)
                          +++++|+++|+..+.....+.+++.....
T Consensus       239 ----~~v~~Ll~~ga~~~~~~~~g~tpl~~a~~  267 (282)
T 1oy3_D          239 ----ILARLLRAHGAPEPEDGGDKLSPCSSSGS  267 (282)
T ss_dssp             ----HHHHHHHHTTCCCCCCC------------
T ss_pred             ----HHHHHHHHcCCCcCcCCCcccccccccCC
Confidence                48999999999988777777777765544

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=3.3e-35  Score=294.35  Aligned_cols=230  Identities=18%  Similarity=0.164  Sum_probs=202.5

Q ss_pred             hhhHHHHHhhchhhhhccCCCCCCHHHHHHHcCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhc-
Q 011183            8 AEFDTEVAEIRSSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDH-   86 (491)
Q Consensus         8 ~~~~~~~~~~~~~~l~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~-   86 (491)
                      .+.+..+++ .+.++|..|..|.||||+|+..|+.++|++|++.+++    ..+.+|.||||+|+..|+.+++++|+++ 
T Consensus        33 ~~~v~~Ll~-~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~----~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~  107 (364)
T 3ljn_A           33 TDEVRRLIE-TGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEV----HSLWHGQKPIHLAVMANKTDLVVALVEGA  107 (364)
T ss_dssp             HHHHHHHHH-TTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCC----CCCBTTBCHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHH-cCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCC----ccccCCCCHHHHHHHcCCHHHHHHHHHhc
Confidence            345555554 5789999999999999999999999999999998874    2345799999999999999999999998 


Q ss_pred             ---CCCCccc-----------------CCCCCCCHHHHHHHcC--CHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCC
Q 011183           87 ---DPSLSQT-----------------TGPSNATPLVSAATRG--HTAVVNELLSKDGGLLEISRSNGKNALHFAARQGH  144 (491)
Q Consensus        87 ---~~~l~~~-----------------~~~~g~tpL~~A~~~g--~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~  144 (491)
                         +.+. ..                 .|..|.||||+|+..|  +.+++++|++. +.+++..|..|.||||+|+..|+
T Consensus       108 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~-ga~~~~~d~~g~t~L~~A~~~g~  185 (364)
T 3ljn_A          108 KERGQMP-ESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQL-GASPTAKDKADETPLMRAMEFRN  185 (364)
T ss_dssp             HHHTCCH-HHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHH-TCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             cccCCCH-HHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHc-CCCCcccCCCCCCHHHHHHHcCC
Confidence               6654 23                 6778999999999999  99999999998 67788999999999999999999


Q ss_pred             HHHHHHHHhCCccc----ccccCCCCCCHHHHHHhCCCHHHHHHHHhcCcccccCCCCCCChHHHHHHHcCcHHHHHHHh
Q 011183          145 VDVVKALLSKDPQL----ARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELL  220 (491)
Q Consensus       145 ~~iv~~Ll~~~~~~----~~~~d~~g~t~Lh~Aa~~~~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~~~~~iv~~Ll  220 (491)
                      .+++++|++++++.    .+..|..|+||||+|+..|+.+++++|+++|++ ++.+|..|.||||+|+..|+.+++++|+
T Consensus       186 ~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad-~~~~d~~g~tpL~~A~~~g~~~~v~~Ll  264 (364)
T 3ljn_A          186 REALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGID-VNMEDNEHTVPLYLSVRAAMVLLTKELL  264 (364)
T ss_dssp             HHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCC-TTCCCTTSCCHHHHHHHTCCHHHHHHHH
T ss_pred             HHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHhChHHHHHHHH
Confidence            99999999998882    377899999999999999999999999999999 7899999999999999999999999999


Q ss_pred             cCCCCCccc------------ccCCCCCHHHHHhhCCC
Q 011183          221 SLPDTNVNA------------LTRDHKTALDIAEGLPS  246 (491)
Q Consensus       221 ~~~g~~~~~------------~d~~G~t~L~~A~~~~~  246 (491)
                      + .|++++.            .+..|+||++.|+..+.
T Consensus       265 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~~  301 (364)
T 3ljn_A          265 Q-KTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPS  301 (364)
T ss_dssp             H-HSCHHHHHTCTTBSSSSBCGGGCCCCTTSCSSCCHH
T ss_pred             H-cCCchhhhcCcccCcccccccccccccchhhhhccC
Confidence            9 5655432            56788888888876543

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=1.7e-33  Score=264.20  Aligned_cols=216  Identities=25%  Similarity=0.334  Sum_probs=197.2

Q ss_pred             ccccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcH
Q 011183           56 GLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNA  135 (491)
Q Consensus        56 ~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tp  135 (491)
                      +++..|..|.||||+|+..|+.+++++|+++|+++ +..+..|.||||+|+..|+.+++++|++. +..++..+..|.||
T Consensus         3 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~   80 (237)
T 3b7b_A            3 NFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANI-DTCSEDQRTPLMEAAENNHLEAVKYLIKA-GALVDPKDAEGSTC   80 (237)
T ss_dssp             CCCCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHTT-TCCCCCCCTTSCCH
T ss_pred             CcccccCCCCCHHHHHHHcCcHHHHHHHHHcCCCc-CccCCCCCCHHHHHHHhCCHHHHHHHHhC-CCCCCCCCCCCCcH
Confidence            36778999999999999999999999999999997 67788999999999999999999999987 56678889999999


Q ss_pred             HHHHHHcCCHHHHHHHHhCCcccccccCCCCCCHHHHHHhCCCHHHHHHHHhcCcccccCCCCCCChHHHHHHHcCcHHH
Q 011183          136 LHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEI  215 (491)
Q Consensus       136 Lh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~~~~~i  215 (491)
                      ||+|+..|+.+++++|++.++...+..|..|.||||+|+..++.+++++|++.|++ ++.+|..|+||||+|+..|+.++
T Consensus        81 L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~  159 (237)
T 3b7b_A           81 LHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSD-INIRDNEENICLHWAAFSGCVDI  159 (237)
T ss_dssp             HHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHCCHHH
T ss_pred             HHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCccCCCCCCHHHHHHHCCCHHH
Confidence            99999999999999999999655588899999999999999999999999999998 78899999999999999999999


Q ss_pred             HHHHhcCCCCCcccccCCCCCHHHHHhhCCCchhhHHHHHHHHHcCccccccCCCchHHHHHHH
Q 011183          216 VTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVRANELNQPRDELRKTV  279 (491)
Q Consensus       216 v~~Ll~~~g~~~~~~d~~G~t~L~~A~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~l~~~~  279 (491)
                      +++|++ .|++++.+|..|.||||+|+..++.    ++++.|++.|+........+.+++..+.
T Consensus       160 ~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~----~~v~~Ll~~gad~~~~d~~g~t~l~~A~  218 (237)
T 3b7b_A          160 AEILLA-AKCDLHAVNIHGDSPLHIAARENRY----DCVVLFLSRDSDVTLKNKEGETPLQCAS  218 (237)
T ss_dssp             HHHHHT-TTCCTTCCCTTCCCHHHHHHHTTCH----HHHHHHHTTTCCTTCCCTTSCCHHHHSC
T ss_pred             HHHHHH-cCCCCCCcCCCCCCHHHHHHHhCCH----hHHHHHHHcCCCCCccCCCCCCHHHHHH
Confidence            999999 7999999999999999999998764    4888999999988776666777766543

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=100.00  E-value=1.8e-33  Score=257.14  Aligned_cols=193  Identities=30%  Similarity=0.355  Sum_probs=179.0

Q ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCCHHHHH
Q 011183           26 NELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSA  105 (491)
Q Consensus        26 ~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A  105 (491)
                      +..+.||||.|+..|+.+.++.|++.+. .+++..|..|.||||+|+..|+.+++++|+++|+++ +..|..|.||||+|
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~ll~~~~-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A   79 (201)
T 3hra_A            2 KTYEVGALLEAANQRDTKKVKEILQDTT-YQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADI-NLQNSISDSPYLYA   79 (201)
T ss_dssp             -CCCTTHHHHHHHTTCHHHHHHHHTCTT-CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHH
T ss_pred             CcccccHHHHHHHhccHHHHHHHHHcCC-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHH
Confidence            5678999999999999999999999765 246788999999999999999999999999999997 67889999999999


Q ss_pred             HHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCCHHHHHHhCCC-----HH
Q 011183          106 ATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQS-----CE  180 (491)
Q Consensus       106 ~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~~-----~~  180 (491)
                      +..|+.+++++|++..+.+++..|..|.||||+|+..|+.+++++|+++++...+..|..|+||||+|+..++     .+
T Consensus        80 ~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~  159 (201)
T 3hra_A           80 GAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQD  159 (201)
T ss_dssp             HHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHH
T ss_pred             HHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHH
Confidence            9999999999999887888899999999999999999999999999999944458889999999999999988     99


Q ss_pred             HHHHHHhcCcccccCCCCCCChHHHHHHHcCcHHHHHHHhc
Q 011183          181 VVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLS  221 (491)
Q Consensus       181 iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~~~~~iv~~Ll~  221 (491)
                      ++++|+++|++ ++.+|..|+||||+|+..|+.+++++|++
T Consensus       160 ~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~  199 (201)
T 3hra_A          160 IVKLLMENGAD-QSIKDNSGRTAMDYANQKGYTEISKILAQ  199 (201)
T ss_dssp             HHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHT
T ss_pred             HHHHHHHCCCC-CCccCCCCCCHHHHHHHcCCHhHHHHHHh
Confidence            99999999999 78899999999999999999999999998

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=1.3e-33  Score=265.33  Aligned_cols=222  Identities=30%  Similarity=0.330  Sum_probs=191.2

Q ss_pred             ccCCCCCChHHHHHHHcCcHHHHHHHHh----cCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCC
Q 011183           58 TRKNRSGFDPLHIAAVQGHHAIVQVLLD----HDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGK  133 (491)
Q Consensus        58 ~~~~~~g~TpLh~A~~~g~~~iv~~Ll~----~~~~l~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~  133 (491)
                      +..|.+|.||||+|+..|+.+++++|++    .+.++ +..|..|.||||+|+..|+.+++++|++. +.+++..|.+|.
T Consensus         3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~   80 (241)
T 1k1a_A            3 TRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGREL-DIYNNLRQTPLHLAVITTLPSVVRLLVTA-GASPMALDRHGQ   80 (241)
T ss_dssp             ----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSC
T ss_pred             cccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCC-CcccccCCCHHHHHHHcCCHHHHHHHHHc-CCCccccCCCCC
Confidence            4578899999999999999999999997    56666 67889999999999999999999999987 567788899999


Q ss_pred             cHHHHHHHcCCHHHHHHHHhCCc----ccccccCCCCCCHHHHHHhCCCHHHHHHHHhcCcccccCCC-CCCChHHHHHH
Q 011183          134 NALHFAARQGHVDVVKALLSKDP----QLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPD-KFGNTALHVAT  208 (491)
Q Consensus       134 tpLh~A~~~g~~~iv~~Ll~~~~----~~~~~~d~~g~t~Lh~Aa~~~~~~iv~~Ll~~~~~~~~~~d-~~G~TpLh~A~  208 (491)
                      ||||+|+..|+.+++++|++.++    ++ +..|..|.||||+|+..++.+++++|++.|++ ++..| ..|.||||+|+
T Consensus        81 t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~~g~t~L~~A~  158 (241)
T 1k1a_A           81 TAAHLACEHRSPTCLRALLDSAAPGTLDL-EARNYDGLTALHVAVNTECQETVQLLLERGAD-IDAVDIKSGRSPLIHAV  158 (241)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHHSCTTSCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTTCCCHHHHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCccccc-cccCcCCCcHHHHHHHcCCHHHHHHHHHcCCC-cccccccCCCcHHHHHH
Confidence            99999999999999999999987    44 67789999999999999999999999999999 56666 88999999999


Q ss_pred             HcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCchhhHHHHHHHHHcCccccccCCCchHHHHHHHHHhhhhhhh
Q 011183          209 RKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVRANELNQPRDELRKTVTQIKKDVHT  288 (491)
Q Consensus       209 ~~~~~~iv~~Ll~~~g~~~~~~d~~G~t~L~~A~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~  288 (491)
                      ..|+.+++++|++ .|++++.+|..|.||||+|+..++.    ++++.|++.|+..+.....+.+++..+......++.+
T Consensus       159 ~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~----~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~i~~  233 (241)
T 1k1a_A          159 ENNSLSMVQLLLQ-HGANVNAQMYSGSSALHSASGRGLL----PLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILR  233 (241)
T ss_dssp             HTTCHHHHHHHHH-TTCCTTCBCTTSCBHHHHHHHHTCH----HHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHHHHHHT
T ss_pred             HcCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHHHHcCCH----HHHHHHHhcCCCCCCcCCCCCCHHHHHHhcCcHHHHh
Confidence            9999999999999 7999999999999999999987664    4888999999987766656666655444443334333

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=3.5e-33  Score=260.30  Aligned_cols=209  Identities=23%  Similarity=0.256  Sum_probs=188.6

Q ss_pred             hhhhHHHHHhhchhhhhccCCCCCCHHHHHHHcCCHHHHHHHHhccCcccccc-CCCCCChHHHHHHHcCcHHHHHHHHh
Q 011183            7 GAEFDTEVAEIRSSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTR-KNRSGFDPLHIAAVQGHHAIVQVLLD   85 (491)
Q Consensus         7 ~~~~~~~~~~~~~~~l~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~-~~~~g~TpLh~A~~~g~~~iv~~Ll~   85 (491)
                      ..+....+++..+...+..|.+|.||||+|+..|+.+++++|++.+++.++.. .+..|.||||+|+..|+.+++++|++
T Consensus        14 ~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~   93 (228)
T 2dzn_A           14 EFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYD   93 (228)
T ss_dssp             CHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHHHCCHHHHHHHHS
T ss_pred             CHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            45677788888888888899999999999999999999999999986666666 88999999999999999999999999


Q ss_pred             cC--CCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhCCcccccccC
Q 011183           86 HD--PSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTD  163 (491)
Q Consensus        86 ~~--~~l~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d  163 (491)
                      ++  +++ +..+..|.||||+|+..|+.+++++|++. +.+++..|..|.||||+|+..|+.+++++|++.++...+..|
T Consensus        94 ~g~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~d  171 (228)
T 2dzn_A           94 RPLKPDL-NKITNQGVTCLHLAVGKKWFEVSQFLIEN-GASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQD  171 (228)
T ss_dssp             SSSCCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCSCCCC
T ss_pred             CCCCccc-ccCCcCCCCHHHHHHHcCCHhHHHHHHHc-CCCccccCCCCCCHHHHHHHcCCHHHHHHHHhcCcccccCcC
Confidence            98  666 67788999999999999999999999998 677889999999999999999999999999999944448889


Q ss_pred             CCCCCHHHHHHhCCCHHHHHHHH-hcCcccccCCCCCCChHHHHHHHcCcHHHHHHHhc
Q 011183          164 KKGQTALHMAVKGQSCEVVKLLL-EADAAIVMLPDKFGNTALHVATRKKRTEIVTELLS  221 (491)
Q Consensus       164 ~~g~t~Lh~Aa~~~~~~iv~~Ll-~~~~~~~~~~d~~G~TpLh~A~~~~~~~iv~~Ll~  221 (491)
                      ..|+||||+|+..|+.+++++|+ +.|++ ++.+|.+|.||||+|+..   +++++|++
T Consensus       172 ~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~-~~~~~~~g~t~l~~A~~~---~~~~~l~~  226 (228)
T 2dzn_A          172 KQGWTPLFHALAEGHGDAAVLLVEKYGAE-YDLVDNKGAKAEDVALNE---QVKKFFLN  226 (228)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHHHCCC-SCCBCTTSCBGGGGCSST---THHHHHHT
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHhcCCC-CCccCCCCCcHHHHHHHH---HHHHHHHh
Confidence            99999999999999999999999 88998 889999999999999765   45666655

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=100.00  E-value=2.6e-34  Score=276.10  Aligned_cols=217  Identities=19%  Similarity=0.253  Sum_probs=169.9

Q ss_pred             hhhhhccCCCCCCHHHHHHHcCCHHHHHHHHhccCcc--ccc----cCCCCCChHHHHHHHc---CcHHHHHHHHhcCCC
Q 011183           19 SSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKE--GLT----RKNRSGFDPLHIAAVQ---GHHAIVQVLLDHDPS   89 (491)
Q Consensus        19 ~~~l~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~--~l~----~~~~~g~TpLh~A~~~---g~~~iv~~Ll~~~~~   89 (491)
                      ++..+..|..|.||||.|+..|+.++|+.|++.+.+.  .+.    ..|..|.||||+|+..   |+.+++++|+++|++
T Consensus         3 ~a~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~   82 (273)
T 2pnn_A            3 SAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARK   82 (273)
T ss_dssp             --------CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHH
T ss_pred             cccCCCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhcc
Confidence            4456778999999999999999999999999854221  122    3578999999999987   999999999998764


Q ss_pred             Cc----------ccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccCC--------------CCCcHHHHHHHcCCH
Q 011183           90 LS----------QTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRS--------------NGKNALHFAARQGHV  145 (491)
Q Consensus        90 l~----------~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~d~--------------~g~tpLh~A~~~g~~  145 (491)
                      ..          ...|..|.||||+|+..|+.+++++|++. +.+++..+.              .|.||||+|+..|+.
T Consensus        83 ~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~-ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~  161 (273)
T 2pnn_A           83 TDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVEN-GADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQL  161 (273)
T ss_dssp             TTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCH
T ss_pred             ccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHC-CCCcCccccccccccccccccccCCCCHHHHHHHcCCH
Confidence            21          22566899999999999999999999998 566777776              799999999999999


Q ss_pred             HHHHHHHh---CCcccccccCCCCCCHHHHHHhCCC---------HHHHHHHHhcCcccc------cCCCCCCChHHHHH
Q 011183          146 DVVKALLS---KDPQLARRTDKKGQTALHMAVKGQS---------CEVVKLLLEADAAIV------MLPDKFGNTALHVA  207 (491)
Q Consensus       146 ~iv~~Ll~---~~~~~~~~~d~~g~t~Lh~Aa~~~~---------~~iv~~Ll~~~~~~~------~~~d~~G~TpLh~A  207 (491)
                      +++++|++   .+.++ +.+|..|+||||+|++.++         .+++++|++.|+++.      +.+|..|+||||+|
T Consensus       162 ~~v~~Ll~~~~~gad~-~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A  240 (273)
T 2pnn_A          162 AIVKFLLQNSWQPADI-SARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALA  240 (273)
T ss_dssp             HHHHHHHHCSSCCCCT-TCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHH
T ss_pred             HHHHHHHhcccCCCCc-eeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHH
Confidence            99999999   88887 7889999999999999888         799999999999843      35899999999999


Q ss_pred             HHcCcHHHHHHHhcCCCC-CcccccCCCCCHH
Q 011183          208 TRKKRTEIVTELLSLPDT-NVNALTRDHKTAL  238 (491)
Q Consensus       208 ~~~~~~~iv~~Ll~~~g~-~~~~~d~~G~t~L  238 (491)
                      +..|+.+++++|++ .|+ |+......+.+|-
T Consensus       241 ~~~g~~~iv~~Ll~-~ga~dp~~~~~~~~~~~  271 (273)
T 2pnn_A          241 ASSGKIGVLAYILQ-REIHEPECRHAAAHHHH  271 (273)
T ss_dssp             HHTTCHHHHHHHHH-HHTC-------------
T ss_pred             HHhChHHHHHHHHH-CCCCCchhhhhhhhhcc
Confidence            99999999999999 677 8887777776654

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.7e-33  Score=269.96  Aligned_cols=204  Identities=26%  Similarity=0.343  Sum_probs=155.1

Q ss_pred             hhhHHHHHhhch-------hhhhccCCCCCCHHHHHHHcCCH-HHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHH
Q 011183            8 AEFDTEVAEIRS-------SVVNEVNELGETALFTAADKGHI-EVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAI   79 (491)
Q Consensus         8 ~~~~~~~~~~~~-------~~l~~~~~~g~T~Lh~Aa~~g~~-~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~i   79 (491)
                      .+.+..+++...       ..++..|..|.||||.|+..++. .+++.|++.|.+  ++..|.+|.||||+|+..|+.++
T Consensus        24 ~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gad--vn~~d~~G~TpLh~A~~~g~~~~  101 (269)
T 4b93_B           24 LEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLG--VNVTSQDGSSPLHVAALHGRADL  101 (269)
T ss_dssp             HHHHHHHHTCC----------------------------------------CCCC--TTCCCTTSCCHHHHHHHTTCTTH
T ss_pred             HHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCC--CCCcCCCCCCHHHHHHHcCcHHH
Confidence            445555555432       23677888999999999998875 488999998876  67889999999999999999999


Q ss_pred             HHHHHhcCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhCCcccc
Q 011183           80 VQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLA  159 (491)
Q Consensus        80 v~~Ll~~~~~l~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~  159 (491)
                      +++|++.++++ ...+..|.||+++|+..++.++++.|++. +.+++..|.+|.||||+|+..|+.+++++|+++++++ 
T Consensus       102 v~~Ll~~~a~~-~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~-g~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadv-  178 (269)
T 4b93_B          102 IPLLLKHGANA-GARNADQAVPLHLACQQGHFQVVKCLLDS-NAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASI-  178 (269)
T ss_dssp             HHHHHHTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCSCCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCCT-
T ss_pred             HHHHHhcCCCc-CccCCCCCCccccccccChHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCC-
Confidence            99999999997 67889999999999999999999999988 6678899999999999999999999999999999997 


Q ss_pred             cccCCCCCCHHHHHHhCCCHHHHHHHHhcCcccccCCCCCCChHHHHHHHcCcHHHHHHH
Q 011183          160 RRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTEL  219 (491)
Q Consensus       160 ~~~d~~g~t~Lh~Aa~~~~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~~~~~iv~~L  219 (491)
                      +..|..|+||||+|+..|+.+++++|+++|++ ++.+|.+|+||||+|+++++  ++++|
T Consensus       179 n~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad-~~~~d~~G~TpL~~A~~~~~--i~~lL  235 (269)
T 4b93_B          179 NASNNKGNTALHEAVIEKHVFVVELLLLHGAS-VQVLNKRQRTAVDCAEQNSK--IMELL  235 (269)
T ss_dssp             TCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCC-SCCCCTTSCCSGGGSCTTCH--HHHHT
T ss_pred             CccccCCCcHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHhCCc--HHHHH
Confidence            78899999999999999999999999999999 88999999999999988775  44443

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=100.00  E-value=2.8e-32  Score=255.07  Aligned_cols=194  Identities=24%  Similarity=0.237  Sum_probs=172.9

Q ss_pred             CCChHHHHHHHcCcHHHHHHHHhc-CCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcc----cccCCCCCcHHH
Q 011183           63 SGFDPLHIAAVQGHHAIVQVLLDH-DPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLL----EISRSNGKNALH  137 (491)
Q Consensus        63 ~g~TpLh~A~~~g~~~iv~~Ll~~-~~~l~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~----~~~d~~g~tpLh  137 (491)
                      .|+||||.|+..|+.++++.|++. +.++ +..|..|.||||+|+..|+.+++++|++.+....    +..|.+|.||||
T Consensus         2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~   80 (232)
T 2rfa_A            2 IWESPLLLAAKENDVQALSKLLKFEGCEV-HQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALH   80 (232)
T ss_dssp             CTTCHHHHHHHTTCHHHHHHHHTTTCSCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhcCCCc-ccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHH
Confidence            489999999999999999999998 7776 7789999999999999999999999999854322    556779999999


Q ss_pred             HHHHcCCHHHHHHHHhCCcccccccCC-------------CCCCHHHHHHhCCCHHHHHHHHhcCcccccCCCCCCChHH
Q 011183          138 FAARQGHVDVVKALLSKDPQLARRTDK-------------KGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTAL  204 (491)
Q Consensus       138 ~A~~~g~~~iv~~Ll~~~~~~~~~~d~-------------~g~t~Lh~Aa~~~~~~iv~~Ll~~~~~~~~~~d~~G~TpL  204 (491)
                      +|+..|+.+++++|+++++++ +..+.             .|+||||+|+..|+.+++++|+++|++ ++.+|..|+|||
T Consensus        81 ~A~~~~~~~~v~~Ll~~g~~~-~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~d~~g~t~L  158 (232)
T 2rfa_A           81 IAVINQNVNLVRALLARGASV-SARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGAD-IRAQDSLGNTVL  158 (232)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCT-TCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHH
T ss_pred             HHHHcCCHHHHHHHHhCCCCC-CcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCCHH
Confidence            999999999999999999887 44433             799999999999999999999999998 888999999999


Q ss_pred             HHHHHcCcHHHH----HHHhcCCCCCc------ccccCCCCCHHHHHhhCCCchhhHHHHHHHHHcCccc
Q 011183          205 HVATRKKRTEIV----TELLSLPDTNV------NALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVR  264 (491)
Q Consensus       205 h~A~~~~~~~iv----~~Ll~~~g~~~------~~~d~~G~t~L~~A~~~~~~~~~~~i~~~L~~~ga~~  264 (491)
                      |+|+..++.+++    ++|++ .|+++      +.+|..|+||||+|+..++.+    +++.|+++|+..
T Consensus       159 ~~A~~~~~~~~~~~i~~~Ll~-~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~----~v~~Ll~~g~~~  223 (232)
T 2rfa_A          159 HILILQPNKTFACQMYNLLLS-YDGGDHLKSLELVPNNQGLTPFKLAGVEGNIV----MFQHLMQKRKHI  223 (232)
T ss_dssp             HHHHTCSCHHHHHHHHHHHHH-TTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHH----HHHHHHHHHHHC
T ss_pred             HHHHHcCChHHHHHHHHHHHh-cCCchhhhhhhccCCCCCCCHHHHHHHcCCHH----HHHHHHhcCccc
Confidence            999999999988    89998 78887      689999999999999877654    778888877654

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=3.9e-33  Score=261.86  Aligned_cols=200  Identities=25%  Similarity=0.319  Sum_probs=176.8

Q ss_pred             cCCCCCChHHHHHHHcCcHHHHHHHHhcCCC---CcccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcH
Q 011183           59 RKNRSGFDPLHIAAVQGHHAIVQVLLDHDPS---LSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNA  135 (491)
Q Consensus        59 ~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~---l~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tp  135 (491)
                      ..|.+|.||||+|+..|+.++++.|++.++.   ..+..|..|.||||+|+..|+.+++++|++. +.+++..|..|.||
T Consensus         3 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~   81 (236)
T 1ikn_D            3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGA-GCDPELRDFRGNTP   81 (236)
T ss_dssp             ----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSC-CCCSCCCCTTCCCH
T ss_pred             cCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCH
Confidence            4678899999999999999999999998763   2467888999999999999999999999987 66788899999999


Q ss_pred             HHHHHHcCCHHHHHHHHhCCcc-----cccccCCCCCCHHHHHHhCCCHHHHHHHHhcCcccccCCCC-CCChHHHHHHH
Q 011183          136 LHFAARQGHVDVVKALLSKDPQ-----LARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDK-FGNTALHVATR  209 (491)
Q Consensus       136 Lh~A~~~g~~~iv~~Ll~~~~~-----~~~~~d~~g~t~Lh~Aa~~~~~~iv~~Ll~~~~~~~~~~d~-~G~TpLh~A~~  209 (491)
                      ||+|+..|+.+++++|++.+++     ..+..|..|.||||+|+..|+.+++++|++.|++ ++.+|. .|+||||+|+.
T Consensus        82 L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~~g~tpL~~A~~  160 (236)
T 1ikn_D           82 LHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGAD-VNAQEPCNGRTALHLAVD  160 (236)
T ss_dssp             HHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCC-TTCCCTTTCCCHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCCHHHHHHH
Confidence            9999999999999999999864     2467788999999999999999999999999999 677787 99999999999


Q ss_pred             cCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCchhhHHHHHHHHHcCcccc
Q 011183          210 KKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVRA  265 (491)
Q Consensus       210 ~~~~~iv~~Ll~~~g~~~~~~d~~G~t~L~~A~~~~~~~~~~~i~~~L~~~ga~~~  265 (491)
                      .|+.+++++|++ .|++++.+|..|.||+|+|+..++.    +++++|+++|+...
T Consensus       161 ~~~~~~v~~Ll~-~ga~~~~~~~~g~tpl~~A~~~~~~----~~~~~Ll~~ga~~~  211 (236)
T 1ikn_D          161 LQNPDLVSLLLK-CGADVNRVTYQGYSPYQLTWGRPST----RIQQQLGQLTLENL  211 (236)
T ss_dssp             TTCHHHHHHHHT-TTCCSCCCCTTCCCGGGGCTTSSCH----HHHHHHHTTSCGGG
T ss_pred             cCCHHHHHHHHH-cCCCCCcccCCCCCHHHHHHccCch----HHHHHHHHcchhhh
Confidence            999999999999 7999999999999999999987664    48899999999654

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=100.00  E-value=8.6e-32  Score=245.94  Aligned_cols=195  Identities=23%  Similarity=0.282  Sum_probs=176.2

Q ss_pred             CCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHH
Q 011183           61 NRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAA  140 (491)
Q Consensus        61 ~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~  140 (491)
                      +..+.||||.|+..|+.+.++.|++.++...+..|..|.||||+|+..|+.+++++|++. +.+++..|..|.||||+|+
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~l~~A~   80 (201)
T 3hra_A            2 KTYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDR-GADINLQNSISDSPYLYAG   80 (201)
T ss_dssp             -CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHH
T ss_pred             CcccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCCHHHHHH
Confidence            346889999999999999999999998844578899999999999999999999999998 6678889999999999999


Q ss_pred             HcCCHHHHHHHHhCCcccccccCCCCCCHHHHHHhCCCHHHHHHHHhcCcccccCCCCCCChHHHHHHHcCc-----HHH
Q 011183          141 RQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKR-----TEI  215 (491)
Q Consensus       141 ~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~~~-----~~i  215 (491)
                      ..|+.+++++|++.+....+..|..|.||||+|+..|+.+++++|++.+...++.+|..|+||||+|+..++     .++
T Consensus        81 ~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~  160 (201)
T 3hra_A           81 AQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDI  160 (201)
T ss_dssp             HTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHH
T ss_pred             HcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHH
Confidence            999999999999665544588899999999999999999999999999944488999999999999999998     999


Q ss_pred             HHHHhcCCCCCcccccCCCCCHHHHHhhCCCchhhHHHHHHHHHcC
Q 011183          216 VTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCG  261 (491)
Q Consensus       216 v~~Ll~~~g~~~~~~d~~G~t~L~~A~~~~~~~~~~~i~~~L~~~g  261 (491)
                      +++|++ .|++++.+|..|+||+|+|+..++.+    +++.|+++|
T Consensus       161 v~~Ll~-~ga~~~~~~~~g~t~l~~A~~~~~~~----~~~~Ll~~G  201 (201)
T 3hra_A          161 VKLLME-NGADQSIKDNSGRTAMDYANQKGYTE----ISKILAQYN  201 (201)
T ss_dssp             HHHHHH-TTCCTTCCCTTSCCHHHHHHHHTCHH----HHHHHHTCC
T ss_pred             HHHHHH-CCCCCCccCCCCCCHHHHHHHcCCHh----HHHHHHhcC
Confidence            999999 79999999999999999999876654    777777765

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=1.1e-32  Score=266.62  Aligned_cols=215  Identities=19%  Similarity=0.164  Sum_probs=187.8

Q ss_pred             HcCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCCHHHHHHH
Q 011183           38 DKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNEL  117 (491)
Q Consensus        38 ~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~~g~~~~v~~L  117 (491)
                      ...+.+.+..||..+   +++..|..|.||||+|+..|+.+++++|+++|+++. ..  +|.||||+|+..|+.+++++|
T Consensus         8 ~~~~~~~v~~lL~~~---~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~--~g~t~L~~A~~~g~~~~v~~L   81 (285)
T 3kea_A            8 NTWKSKQLKSFLSSK---DTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKN-LL--ENEFPLHQAATLEDTKIVKIL   81 (285)
T ss_dssp             GGCCHHHHHHHHHST---TTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGS-CC--TTCCHHHHHTTSSSCHHHHHH
T ss_pred             HhcCHHHHHHHHHhC---CCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCC-CC--CCCCHHHHHHHcCCHHHHHHH
Confidence            344444455555433   267889999999999999999999999999998874 33  489999999999999999999


Q ss_pred             HhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhCCcccccccCCCC-CCHHHHHHhCCCHHHHHHHHhcCcccccCC
Q 011183          118 LSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKG-QTALHMAVKGQSCEVVKLLLEADAAIVMLP  196 (491)
Q Consensus       118 L~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g-~t~Lh~Aa~~~~~~iv~~Ll~~~~~~~~~~  196 (491)
                      ++. +.+++..|..|.||||+|+..|+.+++++|+++++++ +..|..| .||||+|+..|+.+++++|++.+++..+  
T Consensus        82 l~~-ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--  157 (285)
T 3kea_A           82 LFS-GLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRL-MFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFD--  157 (285)
T ss_dssp             HHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGG-GGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCC--
T ss_pred             HHC-CCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCC-CccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCcccc--
Confidence            998 6678889999999999999999999999999999997 7788888 8999999999999999999999987422  


Q ss_pred             CCCCChHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCH-HHHHhhCCCchhhHHHHHHHHHcCcccccc
Q 011183          197 DKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTA-LDIAEGLPSSEEASEIKDCLARCGAVRANE  267 (491)
Q Consensus       197 d~~G~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~d~~G~t~-L~~A~~~~~~~~~~~i~~~L~~~ga~~~~~  267 (491)
                      ...|.||||+|+..|+.+++++|++ .|++++.+|..|+|| ||+|+..++.    +++++|+++|+..+..
T Consensus       158 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~gad~n~~~~~g~t~~L~~A~~~~~~----~~v~~Ll~~gad~~~~  224 (285)
T 3kea_A          158 LAILLSCIHITIKNGHVDMMILLLD-YMTSTNTNNSLLFIPDIKLAIDNKDI----EMLQALFKYDINIYSA  224 (285)
T ss_dssp             CSTHHHHHHHHHHTTCHHHHHHHHH-HHHHTCTTCCCBCCTTHHHHHHHTCH----HHHHHHTTSCBCSTTT
T ss_pred             ccCCccHHHHHHHcChHHHHHHHHH-cCCCCCcccCCCCChHHHHHHHcCCH----HHHHHHHHcCCCCCCC
Confidence            2289999999999999999999999 799999999999998 9999987654    5889999999876544

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=9.8e-32  Score=251.89  Aligned_cols=213  Identities=28%  Similarity=0.309  Sum_probs=188.1

Q ss_pred             hhhHHHHHhhchhhhhccCCCCCCHHHHHHHcCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhcC
Q 011183            8 AEFDTEVAEIRSSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHD   87 (491)
Q Consensus         8 ~~~~~~~~~~~~~~l~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~   87 (491)
                      .+....+++ .+.+++..|..|.||||+|+..|+.+++++|++.+.+.. ...+..|.||||+|+..|+.+++++|++.+
T Consensus        22 ~~~~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~-~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g   99 (240)
T 3eu9_A           22 YERCRELVE-AGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVD-QLGGDLNSTPLHWATRQGHLSMVVQLMKYG   99 (240)
T ss_dssp             HHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCBTTTTBCHHHHHHHHTCHHHHHHHHHTT
T ss_pred             hHHHHHHHH-cCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcch-hhcCCcCCChhHHHHHcCCHHHHHHHHHcC
Confidence            445555554 568899999999999999999999999999999887642 345566999999999999999999999999


Q ss_pred             CCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCC-HHHHHHHHhCCcccccccCC-C
Q 011183           88 PSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGH-VDVVKALLSKDPQLARRTDK-K  165 (491)
Q Consensus        88 ~~l~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~-~~iv~~Ll~~~~~~~~~~d~-~  165 (491)
                      +++ +..+..|.||||+|+..|+.+++++|++. +.+++..+.+|.||||.|+..++ .++++.|++.+.++ +..+. .
T Consensus       100 ~~~-~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~-~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~~-~~~~~~~  176 (240)
T 3eu9_A          100 ADP-SLIDGEGCSCIHLAAQFGHTSIVAYLIAK-GQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSV-NLGDKYH  176 (240)
T ss_dssp             CCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHCCSSTTHHHHHHTTCCT-TCCCTTT
T ss_pred             CCC-cccCCCCCCHHHHHHHcCHHHHHHHHHhc-CCCccccCCCCCcHHHHHHHhCChHHHHHHHHhcCCCc-chhhccC
Confidence            997 67789999999999999999999999998 56788899999999999997766 89999999999998 44554 9


Q ss_pred             CCCHHHHHHhCCCHHHHHHHHhcCcccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCc
Q 011183          166 GQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNV  227 (491)
Q Consensus       166 g~t~Lh~Aa~~~~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~~~~~iv~~Ll~~~g~~~  227 (491)
                      |.||||+|+..|+.+++++|+++|++ ++.+|..|.||||+|+..|+.+++++|++ .+.+.
T Consensus       177 g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~~~~v~~L~~-~~~~~  236 (240)
T 3eu9_A          177 KNTALHWAVLAGNTTVISLLLEAGAN-VDAQNIKGESALDLAKQRKNVWMINHLQE-ARQAK  236 (240)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHHTCC-TTCBCTTSCBHHHHHHHTTCHHHHHHHHH-HC---
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCcHHHHHHHHH-hhhcc
Confidence            99999999999999999999999998 78899999999999999999999999998 45443

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=100.00  E-value=1.3e-32  Score=261.56  Aligned_cols=194  Identities=26%  Similarity=0.304  Sum_probs=159.7

Q ss_pred             CCCCHHHHHHHcCCHH----HHHHHHhccCcccccc----CCCCCChHHHHHHHc---CcHHHHHHHHhcCCCCcc----
Q 011183           28 LGETALFTAADKGHIE----VVNELLKYSTKEGLTR----KNRSGFDPLHIAAVQ---GHHAIVQVLLDHDPSLSQ----   92 (491)
Q Consensus        28 ~g~T~Lh~Aa~~g~~~----~v~~Ll~~~~~~~l~~----~~~~g~TpLh~A~~~---g~~~iv~~Ll~~~~~l~~----   92 (491)
                      .|.||||.|+..|+.+    ++++|++.+.+  ++.    .|..|.||||+|+..   |+.+++++|+++|++...    
T Consensus         1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~--i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~   78 (256)
T 2etb_A            1 FDRDRLFSVVSRGVPEELTGLLEYLRWNSKY--LTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPL   78 (256)
T ss_dssp             CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCC--TTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCG
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHcCCC--cccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhh
Confidence            3789999999999997    55666667665  555    788999999999999   999999999998776532    


Q ss_pred             ------cCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccCCC-------------CCcHHHHHHHcCCHHHHHHHHh
Q 011183           93 ------TTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSN-------------GKNALHFAARQGHVDVVKALLS  153 (491)
Q Consensus        93 ------~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~d~~-------------g~tpLh~A~~~g~~~iv~~Ll~  153 (491)
                            ..|..|.||||+|+..|+.+++++|++. +.+++..+..             |.||||+|+..|+.+++++|++
T Consensus        79 ~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~  157 (256)
T 2etb_A           79 VNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVEN-GADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLE  157 (256)
T ss_dssp             GGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHH
T ss_pred             cccccccccccCCCHHHHHHHcCCHHHHHHHHHc-CCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHh
Confidence                  2346789999999999999999999988 5567777765             8899999999999999999998


Q ss_pred             ---CCcccccccCCCCCCHHHHHHh--CCCHH-------HHHHHHhcCcccc------cCCCCCCChHHHHHHHcCcHHH
Q 011183          154 ---KDPQLARRTDKKGQTALHMAVK--GQSCE-------VVKLLLEADAAIV------MLPDKFGNTALHVATRKKRTEI  215 (491)
Q Consensus       154 ---~~~~~~~~~d~~g~t~Lh~Aa~--~~~~~-------iv~~Ll~~~~~~~------~~~d~~G~TpLh~A~~~~~~~i  215 (491)
                         .+.++ +.+|..|+||||+|+.  .++.+       ++++|+++|+++.      +.+|..|+||||+|+..|+.++
T Consensus       158 ~~~~ga~~-n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~  236 (256)
T 2etb_A          158 NPHQPASL-EATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEI  236 (256)
T ss_dssp             CSSCCCCT-TCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHH
T ss_pred             ccccCCCc-CccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCCHHH
Confidence               77776 6778888999999888  77877       8888888888832      7788888899999998888888


Q ss_pred             HHHHhcCCCCC
Q 011183          216 VTELLSLPDTN  226 (491)
Q Consensus       216 v~~Ll~~~g~~  226 (491)
                      +++|++ .|.+
T Consensus       237 v~~Ll~-~g~~  246 (256)
T 2etb_A          237 FRHILQ-REFS  246 (256)
T ss_dssp             HHHHHH-HHHH
T ss_pred             HHHHHh-CCCC
Confidence            888887 3443

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=1.5e-32  Score=267.07  Aligned_cols=237  Identities=21%  Similarity=0.179  Sum_probs=200.4

Q ss_pred             HHHHcCCHHHHHHHHhccCccc-------cccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCCHHHHHHH
Q 011183           35 TAADKGHIEVVNELLKYSTKEG-------LTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAAT  107 (491)
Q Consensus        35 ~Aa~~g~~~~v~~Ll~~~~~~~-------l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~  107 (491)
                      .++..++.+.++.++.......       ....+..|.||||.|+..|+.+++++|+++|+++ +..|..|.||||+|+.
T Consensus         4 ~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~   82 (299)
T 1s70_B            4 ADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGADI-NYANVDGLTALHQACI   82 (299)
T ss_dssp             HHHHHHHHHHHHHHHHTTTSSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHHHCCCT-TCBCTTCCBHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHccccccccccccCcccccccCCccHHHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHH
Confidence            4677788888888887543311       1122345789999999999999999999999997 6788999999999999


Q ss_pred             cCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCCHHHHHHhCCCHHHHHHHHh
Q 011183          108 RGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLE  187 (491)
Q Consensus       108 ~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~~~~iv~~Ll~  187 (491)
                      .|+.+++++|++. +.+++..|..|.||||+|+..|+.+++++|+++++++ +..|..|.||||+|+..++.++++.++.
T Consensus        83 ~g~~~~v~~Ll~~-ga~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~ll~  160 (299)
T 1s70_B           83 DDNVDMVKFLVEN-GANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHV-GAVNSEGDTPLDIAEEEAMEELLQNEVN  160 (299)
T ss_dssp             TTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHCCSHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHC-CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCC-CCcCCCCCCHHHHHHhcchHHHHHHHHh
Confidence            9999999999997 6678889999999999999999999999999999987 7789999999999999999999887765


Q ss_pred             cC--------------------------cccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHH
Q 011183          188 AD--------------------------AAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA  241 (491)
Q Consensus       188 ~~--------------------------~~~~~~~d~~G~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~d~~G~t~L~~A  241 (491)
                      ..                          .......+..|.||||+|+..|+.+++++|++ .|++++.+|..|.||||+|
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~g~d~~~~d~~g~tpL~~A  239 (299)
T 1s70_B          161 RQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQ-ARYDVNIKDYDGWTPLHAA  239 (299)
T ss_dssp             HHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHT-TTCCTTCCCTTCCCHHHHH
T ss_pred             hcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHH-cCCCCCCcCCCCCcHHHHH
Confidence            32                          22223467789999999999999999999998 8999999999999999999


Q ss_pred             hhCCCchhhHHHHHHHHHcCccccccCCCchHHHHHHH
Q 011183          242 EGLPSSEEASEIKDCLARCGAVRANELNQPRDELRKTV  279 (491)
Q Consensus       242 ~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~l~~~~  279 (491)
                      +..++.+    ++++|++.|+........+.+++..+.
T Consensus       240 ~~~~~~~----~v~~Ll~~gad~~~~d~~g~t~l~~A~  273 (299)
T 1s70_B          240 AHWGKEE----ACRILVENLCDMEAVNKVGQTAFDVAD  273 (299)
T ss_dssp             HHTTCHH----HHHHHHHTTCCTTCCCTTSCCTTTSCC
T ss_pred             HhcCCHH----HHHHHHHcCCCCCCcCCCCCCHHHHHH
Confidence            9987654    888999999987766666666555443

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.98  E-value=2.3e-32  Score=269.84  Aligned_cols=200  Identities=19%  Similarity=0.200  Sum_probs=168.4

Q ss_pred             CHHHHHHHcCCHHHHHHHHhccCcccccc-CCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcC
Q 011183           31 TALFTAADKGHIEVVNELLKYSTKEGLTR-KNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRG  109 (491)
Q Consensus        31 T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~-~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~~g  109 (491)
                      +.+|+|+..+..++++.|++.+.+  ++. .|..|.||||+|+..|+.+++++|+++|+++ +..|..|+||||+|+..|
T Consensus        99 ~~~~~a~~~~~~~~~~~l~~~g~d--vn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~-n~~d~~g~TpLh~A~~~g  175 (327)
T 1sw6_A           99 QQQHVSFDSLLQEVNDAFPNTQLN--LNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNR-LYGDNMGESCLVKAVKSV  175 (327)
T ss_dssp             -----CHHHHHHHHHHHCTTSCCC--SCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TBCCTTCCCHHHHHHHSS
T ss_pred             chhHHHHHhhHHHHHHHHHhcCCC--cccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHhc
Confidence            345888888889999999998766  566 7999999999999999999999999999998 688999999999999999


Q ss_pred             C---HHHHHHHHhcCCCcccccCCCCCcHHHHHHH----cCCHHHHHHHHhC--------------------Cccccccc
Q 011183          110 H---TAVVNELLSKDGGLLEISRSNGKNALHFAAR----QGHVDVVKALLSK--------------------DPQLARRT  162 (491)
Q Consensus       110 ~---~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~----~g~~~iv~~Ll~~--------------------~~~~~~~~  162 (491)
                      +   .++++.|++....+++..|.+|+||||+|+.    .|+.++++.|++.                    +.++ +..
T Consensus       176 ~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~-~~~  254 (327)
T 1sw6_A          176 NNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKP-NDK  254 (327)
T ss_dssp             HHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC------------
T ss_pred             ccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCc-ccc
Confidence            8   6888888887666788999999999999999    8999999999987                    5554 677


Q ss_pred             CCCCCCHHHHHHhCCCHHHHHHHHhcCcccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHh
Q 011183          163 DKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAE  242 (491)
Q Consensus       163 d~~g~t~Lh~Aa~~~~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~d~~G~t~L~~A~  242 (491)
                      |..|.||||.|+.      +++|++.+   ++.+|..|+||||+|+..|+.+++++|++ .|++++.+|..|+||||+|+
T Consensus       255 ~~~g~t~L~~a~~------~~~Ll~~~---~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~-~Gad~~~~d~~G~TpL~~A~  324 (327)
T 1sw6_A          255 NGERKDSILENLD------LKWIIANM---LNAQDSNGDTCLNIAARLGNISIVDALLD-YGADPFIANKSGLRPVDFGA  324 (327)
T ss_dssp             -----CHHHHHCS------HHHHHHHT---TTCCCTTSCCHHHHHHHHCCHHHHHHHHH-TTCCTTCCCTTSCCGGGGTC
T ss_pred             cccCCChhHHHHH------HHHHHHhC---CCCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCcccCCCCCCHHHHHH
Confidence            8999999999985      89999983   77899999999999999999999999999 79999999999999999997


Q ss_pred             hC
Q 011183          243 GL  244 (491)
Q Consensus       243 ~~  244 (491)
                      ..
T Consensus       325 ~~  326 (327)
T 1sw6_A          325 GL  326 (327)
T ss_dssp             C-
T ss_pred             hc
Confidence            64

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.97  E-value=4.3e-31  Score=234.81  Aligned_cols=157  Identities=35%  Similarity=0.473  Sum_probs=82.8

Q ss_pred             HHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHH
Q 011183           67 PLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVD  146 (491)
Q Consensus        67 pLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~  146 (491)
                      +|+.||+.|+.++|+.|+++|+++ +.+|..|+||||+|+..++.++++.|++. +.+++..|.+|+||||+|+..|+.+
T Consensus         7 ~L~~Aa~~G~~~~v~~Ll~~Gadv-n~~d~~g~t~l~~a~~~~~~~~~~~ll~~-gad~~~~d~~g~TpLh~A~~~g~~~   84 (169)
T 4gpm_A            7 RLIEAAENGNKDRVKDLIENGADV-NASDSDGRTPLHHAAENGHKEVVKLLISK-GADVNAKDSDGRTPLHHAAENGHKE   84 (169)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHhc-ccchhhhccCCCCHHHHHHHcCCHH
Confidence            455555555555555555555554 34455555555555555555555555544 3344455555555555555555555


Q ss_pred             HHHHHHhCCcccccccCCCCCCHHHHHHhCCCHHHHHHHHhcCcccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCC
Q 011183          147 VVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTN  226 (491)
Q Consensus       147 iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~~~~~iv~~Ll~~~g~~  226 (491)
                      ++++|+++++++ +.+|.+|+||||+|++.|+.+++++|++.|++ ++.+|.+|+||||+|+..|+.+++++|++ .|++
T Consensus        85 ~v~~Ll~~gadv-n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad-~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~-~GA~  161 (169)
T 4gpm_A           85 VVKLLISKGADV-NAKDSDGRTPLHHAAENGHKEVVKLLISKGAD-VNTSDSDGRTPLDLAREHGNEEVVKLLEK-QGGW  161 (169)
T ss_dssp             HHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHT-C---
T ss_pred             HHHHHHHCcCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-ccccCCCCCCHHHHHHHcCCHHHHHHHHH-CCCC
Confidence            555555555554 44555555555555555555555555555555 45555555555555555555555555555 4555


Q ss_pred             cc
Q 011183          227 VN  228 (491)
Q Consensus       227 ~~  228 (491)
                      ++
T Consensus       162 ie  163 (169)
T 4gpm_A          162 LE  163 (169)
T ss_dssp             --
T ss_pred             cC
Confidence            43

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.97  E-value=9e-31  Score=232.76  Aligned_cols=157  Identities=34%  Similarity=0.548  Sum_probs=146.0

Q ss_pred             CHHHHHHHcCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCC
Q 011183           31 TALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGH  110 (491)
Q Consensus        31 T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~~g~  110 (491)
                      ++|+.||+.|+.++|+.||+.|++  ++.+|..|.||||+|+..++.+++++|+++|+++ +.+|..|+||||+|+..|+
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~Gad--vn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~-~~~d~~g~TpLh~A~~~g~   82 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIENGAD--VNASDSDGRTPLHHAAENGHKEVVKLLISKGADV-NAKDSDGRTPLHHAAENGH   82 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCC--TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTC
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCC--CCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccch-hhhccCCCCHHHHHHHcCC
Confidence            479999999999999999999876  6788999999999999999999999999999998 6889999999999999999


Q ss_pred             HHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCCHHHHHHhCCCHHHHHHHHhcCc
Q 011183          111 TAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADA  190 (491)
Q Consensus       111 ~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~~~~iv~~Ll~~~~  190 (491)
                      .+++++|++. +.+++.+|.+|+||||+|+..|+.+++++|+++++++ +.+|.+|+||||+|++.|+.+++++|+++|+
T Consensus        83 ~~~v~~Ll~~-gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~-~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA  160 (169)
T 4gpm_A           83 KEVVKLLISK-GADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADV-NTSDSDGRTPLDLAREHGNEEVVKLLEKQGG  160 (169)
T ss_dssp             HHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHTC--
T ss_pred             HHHHHHHHHC-cCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHHCCC
Confidence            9999999988 6778999999999999999999999999999999997 7889999999999999999999999999999


Q ss_pred             cc
Q 011183          191 AI  192 (491)
Q Consensus       191 ~~  192 (491)
                      ++
T Consensus       161 ~i  162 (169)
T 4gpm_A          161 WL  162 (169)
T ss_dssp             --
T ss_pred             Cc
Confidence            84

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.97  E-value=1.2e-31  Score=254.94  Aligned_cols=195  Identities=24%  Similarity=0.250  Sum_probs=170.3

Q ss_pred             CCChHHHHHHHcCcHH----HHHHHHhcCCCCcc---cCCCCCCCHHHHHHHc---CCHHHHHHHHhcCCCcc-------
Q 011183           63 SGFDPLHIAAVQGHHA----IVQVLLDHDPSLSQ---TTGPSNATPLVSAATR---GHTAVVNELLSKDGGLL-------  125 (491)
Q Consensus        63 ~g~TpLh~A~~~g~~~----iv~~Ll~~~~~l~~---~~~~~g~tpL~~A~~~---g~~~~v~~LL~~~~~~~-------  125 (491)
                      .|+||||.|+..|+.+    ++++|+++++++..   ..|..|.||||+|+..   |+.+++++|++.+....       
T Consensus         1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~   80 (256)
T 2etb_A            1 FDRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVN   80 (256)
T ss_dssp             CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGG
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcc
Confidence            4889999999999997    66777778998843   3789999999999999   99999999998743211       


Q ss_pred             ---cccCCCCCcHHHHHHHcCCHHHHHHHHhCCcccccccCCC-------------CCCHHHHHHhCCCHHHHHHHHh--
Q 011183          126 ---EISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKK-------------GQTALHMAVKGQSCEVVKLLLE--  187 (491)
Q Consensus       126 ---~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~-------------g~t~Lh~Aa~~~~~~iv~~Ll~--  187 (491)
                         ...|.+|.||||+|+..|+.+++++|+++++++ +..|..             |.||||+|+..|+.+++++|++  
T Consensus        81 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~  159 (256)
T 2etb_A           81 AQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADV-HLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENP  159 (256)
T ss_dssp             CCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCS
T ss_pred             cccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence               123467999999999999999999999999987 556665             9999999999999999999999  


Q ss_pred             -cCcccccCCCCCCChHHHHHHH--cCcHH-------HHHHHhcCCCCCc-------ccccCCCCCHHHHHhhCCCchhh
Q 011183          188 -ADAAIVMLPDKFGNTALHVATR--KKRTE-------IVTELLSLPDTNV-------NALTRDHKTALDIAEGLPSSEEA  250 (491)
Q Consensus       188 -~~~~~~~~~d~~G~TpLh~A~~--~~~~~-------iv~~Ll~~~g~~~-------~~~d~~G~t~L~~A~~~~~~~~~  250 (491)
                       .|++ ++.+|..|+||||+|+.  .++.+       ++++|++ .|+++       +.+|..|+||||+|+..++.+  
T Consensus       160 ~~ga~-~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~-~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~--  235 (256)
T 2etb_A          160 HQPAS-LEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQ-MGARLCPTVQLEEISNHQGLTPLKLAAKEGKIE--  235 (256)
T ss_dssp             SCCCC-TTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHH-HHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHH--
T ss_pred             ccCCC-cCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHH-cCCCcccccccccccCCCCCCHHHHHHHhCCHH--
Confidence             8888 88999999999999999  88888       9999999 79999       999999999999999987654  


Q ss_pred             HHHHHHHHHcCccc
Q 011183          251 SEIKDCLARCGAVR  264 (491)
Q Consensus       251 ~~i~~~L~~~ga~~  264 (491)
                        +++.|+++|...
T Consensus       236 --~v~~Ll~~g~~~  247 (256)
T 2etb_A          236 --IFRHILQREFSG  247 (256)
T ss_dssp             --HHHHHHHHHHHH
T ss_pred             --HHHHHHhCCCCC
Confidence              777888877653

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.97  E-value=3.2e-31  Score=252.46  Aligned_cols=198  Identities=23%  Similarity=0.269  Sum_probs=158.1

Q ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHh----ccCccccc--cCCCCCChHHHHHH---HcCcHHHHHHHHhcCCCC------
Q 011183           26 NELGETALFTAADKGHIEVVNELLK----YSTKEGLT--RKNRSGFDPLHIAA---VQGHHAIVQVLLDHDPSL------   90 (491)
Q Consensus        26 ~~~g~T~Lh~Aa~~g~~~~v~~Ll~----~~~~~~l~--~~~~~g~TpLh~A~---~~g~~~iv~~Ll~~~~~l------   90 (491)
                      |..|.||||.|++.|+.+.++.|++    .+.+.+..  ..+..|.||||+|+   ..|+.+++++|++.+++.      
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~   81 (260)
T 3jxi_A            2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREF   81 (260)
T ss_dssp             CCCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHH
T ss_pred             ccchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhh
Confidence            5678999999999999996555555    66553222  12377999999999   779999999999986432      


Q ss_pred             ----cccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccC--------------CCCCcHHHHHHHcCCHHHHHHHH
Q 011183           91 ----SQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISR--------------SNGKNALHFAARQGHVDVVKALL  152 (491)
Q Consensus        91 ----~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~d--------------~~g~tpLh~A~~~g~~~iv~~Ll  152 (491)
                          ....|..|.||||+|+..|+.+++++|++. +.+++..+              ..|.||||+|+..|+.+++++|+
T Consensus        82 ~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll  160 (260)
T 3jxi_A           82 INSPFRDVYYRGQTALHIAIERRCKHYVELLVEK-GADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLT  160 (260)
T ss_dssp             HTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHH
T ss_pred             hcccccccccCCCCHHHHHHHcCCHHHHHHHHhC-CCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHH
Confidence                134455788999999999999999999987 55667666              57889999999999999999999


Q ss_pred             h---CCcccccccCCCCCCHHHHHHhCCC---------HHHHHHHHhcCcccc------cCCCCCCChHHHHHHHcCcHH
Q 011183          153 S---KDPQLARRTDKKGQTALHMAVKGQS---------CEVVKLLLEADAAIV------MLPDKFGNTALHVATRKKRTE  214 (491)
Q Consensus       153 ~---~~~~~~~~~d~~g~t~Lh~Aa~~~~---------~~iv~~Ll~~~~~~~------~~~d~~G~TpLh~A~~~~~~~  214 (491)
                      +   ++.++ +.+|..|+||||+|+..++         .+++++|+++|+++.      +.+|..|+||||+|+..|+.+
T Consensus       161 ~~~~~ga~~-~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~  239 (260)
T 3jxi_A          161 ENGHKQADL-RRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIG  239 (260)
T ss_dssp             HCSSCCCCT-TCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHH
T ss_pred             hccccCCCC-cccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCCHH
Confidence            8   77776 7778889999999997776         688888998888732      678888999999999999999


Q ss_pred             HHHHHhcCCCCC
Q 011183          215 IVTELLSLPDTN  226 (491)
Q Consensus       215 iv~~Ll~~~g~~  226 (491)
                      ++++|++ .|.+
T Consensus       240 ~v~~Ll~-~g~~  250 (260)
T 3jxi_A          240 IFQHIIR-REIA  250 (260)
T ss_dssp             HHHHHHH-HHHH
T ss_pred             HHHHHHH-hCCC
Confidence            9999888 3443

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.97  E-value=5.4e-31  Score=252.93  Aligned_cols=199  Identities=20%  Similarity=0.233  Sum_probs=170.7

Q ss_pred             ccCCCCCChHHHHHHHcCcHHHHHHHHh----cCCCCcc---cCCCCCCCHHHHHHHc---CCHHHHHHHHhcCCC----
Q 011183           58 TRKNRSGFDPLHIAAVQGHHAIVQVLLD----HDPSLSQ---TTGPSNATPLVSAATR---GHTAVVNELLSKDGG----  123 (491)
Q Consensus        58 ~~~~~~g~TpLh~A~~~g~~~iv~~Ll~----~~~~l~~---~~~~~g~tpL~~A~~~---g~~~~v~~LL~~~~~----  123 (491)
                      ...|..|.||||.|+..|+.++++.|++    .++++..   ..|..|.||||+|+..   |+.+++++|++.+..    
T Consensus         7 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~   86 (273)
T 2pnn_A            7 KPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSL   86 (273)
T ss_dssp             ----CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCH
T ss_pred             CCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccch
Confidence            4578889999999999999999999887    4555422   4578999999999987   999999999987421    


Q ss_pred             ------cccccCCCCCcHHHHHHHcCCHHHHHHHHhCCcccccccCC--------------CCCCHHHHHHhCCCHHHHH
Q 011183          124 ------LLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDK--------------KGQTALHMAVKGQSCEVVK  183 (491)
Q Consensus       124 ------~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~--------------~g~t~Lh~Aa~~~~~~iv~  183 (491)
                            .....|..|.||||+|+..|+.+++++|+++++++ +..+.              .|.||||+|+..|+.++++
T Consensus        87 ~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~  165 (273)
T 2pnn_A           87 KQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADV-QAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVK  165 (273)
T ss_dssp             HHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHH
T ss_pred             hHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCc-CccccccccccccccccccCCCCHHHHHHHcCCHHHHH
Confidence                  12225678999999999999999999999999987 55565              7999999999999999999


Q ss_pred             HHHh---cCcccccCCCCCCChHHHHHHHcCc---------HHHHHHHhcCCCCCcc-------cccCCCCCHHHHHhhC
Q 011183          184 LLLE---ADAAIVMLPDKFGNTALHVATRKKR---------TEIVTELLSLPDTNVN-------ALTRDHKTALDIAEGL  244 (491)
Q Consensus       184 ~Ll~---~~~~~~~~~d~~G~TpLh~A~~~~~---------~~iv~~Ll~~~g~~~~-------~~d~~G~t~L~~A~~~  244 (491)
                      +|++   .|++ ++.+|.+|+||||+|+..++         .+++++|++ .|++++       .+|..|+||||+|+..
T Consensus       166 ~Ll~~~~~gad-~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~-~ga~~n~~~~~~~~~d~~g~TpL~~A~~~  243 (273)
T 2pnn_A          166 FLLQNSWQPAD-ISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILI-LGAKLHPTLKLEEITNRKGLTPLALAASS  243 (273)
T ss_dssp             HHHHCSSCCCC-TTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHH-HHHHHCTTCCGGGCCCTTSCCHHHHHHHT
T ss_pred             HHHhcccCCCC-ceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHH-hhhhcccccccccccCCCCCCHHHHHHHh
Confidence            9999   8888 88999999999999999988         799999999 799986       5999999999999998


Q ss_pred             CCchhhHHHHHHHHHcCcc
Q 011183          245 PSSEEASEIKDCLARCGAV  263 (491)
Q Consensus       245 ~~~~~~~~i~~~L~~~ga~  263 (491)
                      ++.+    ++++|+++|+.
T Consensus       244 g~~~----iv~~Ll~~ga~  258 (273)
T 2pnn_A          244 GKIG----VLAYILQREIH  258 (273)
T ss_dssp             TCHH----HHHHHHHHHTC
T ss_pred             ChHH----HHHHHHHCCCC
Confidence            7654    88899999984

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.97  E-value=4.6e-31  Score=254.13  Aligned_cols=193  Identities=25%  Similarity=0.313  Sum_probs=151.9

Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCCHHHHHH-
Q 011183           28 LGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAA-  106 (491)
Q Consensus        28 ~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~-  106 (491)
                      .+.+++|.|+..|+.+.++.+++.+.+..++..|.+|.||||+|+..|+.+++++|++.|+...+..|..|.||||+|+ 
T Consensus        75 ~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~  154 (276)
T 4hbd_A           75 ACRSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTAL  154 (276)
T ss_dssp             HHSTTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGG
T ss_pred             HhccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHH
Confidence            4567778888888888888888766555567778888888888888888888888888887334677788888888888 


Q ss_pred             ----HcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCCHHHHHHhCCCHHHH
Q 011183          107 ----TRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVV  182 (491)
Q Consensus       107 ----~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~~~~iv  182 (491)
                          ..++.++++.|++.+ ...+..+..|.||||+|+..|+.+++++|+++++++ +.+|..|+||||+|+..|+.+++
T Consensus       155 ~~~~~~~~~~~v~~Ll~~g-~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~-n~~d~~G~TpLh~A~~~g~~~iv  232 (276)
T 4hbd_A          155 ATLKTQDDIETVLQLFRLG-NINAKASQAGQTALMLAVSHGRVDVVKALLACEADV-NVQDDDGSTALMCACEHGHKEIA  232 (276)
T ss_dssp             CCCCSHHHHHHHHHHHHHS-CTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHH
T ss_pred             HHhhhhhhHHHHHHHHHcC-CCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-CCCCCCCCCHHHHHHHCCCHHHH
Confidence                557788888888773 555667777888888888888888888888888876 66788888888888888888888


Q ss_pred             HHHHh-cCcccccCCCCCCChHHHHHHHcCcHHHHHHHhcCC
Q 011183          183 KLLLE-ADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLP  223 (491)
Q Consensus       183 ~~Ll~-~~~~~~~~~d~~G~TpLh~A~~~~~~~iv~~Ll~~~  223 (491)
                      ++|++ .|++ ++.+|..|+||||+|+..|+.+++++|++..
T Consensus       233 ~~Ll~~~gad-~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~  273 (276)
T 4hbd_A          233 GLLLAVPSCD-ISLTDRDGSTALMVALDAGQSEIASMLYSRM  273 (276)
T ss_dssp             HHHHTSTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHHC
T ss_pred             HHHHhcCCCC-CcCcCCCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence            88888 6776 6778888888888888888888888888743

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.97  E-value=1.8e-29  Score=229.09  Aligned_cols=171  Identities=24%  Similarity=0.260  Sum_probs=128.4

Q ss_pred             HHhhchhhhhccCCCCCCHHHHHHHcCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCccc
Q 011183           14 VAEIRSSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQT   93 (491)
Q Consensus        14 ~~~~~~~~l~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~   93 (491)
                      +.+..+.++|.+|..|.||||+|+..|+.+++++|++.+.+  ++..|..|.||||+|+..|+.+++++|+++++++ +.
T Consensus        20 i~~~~~~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~   96 (192)
T 2rfm_A           20 INQNLDFLRNYRDSYNRTPLMVACMLGMENAIDKLVENFDK--LEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNV-NT   96 (192)
T ss_dssp             HHHTHHHHHTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCC--TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT-TC
T ss_pred             hhhhhHHHHhCcCCCCCCHHHHHHHcCCHHHHHHHHHhccc--cccccccCccHHHHHHHcCCHHHHHHHHHCCCCC-CC
Confidence            33344566777888888888888888888888888887654  5667777888888888888888888888887776 56


Q ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCCHHHHH
Q 011183           94 TGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMA  173 (491)
Q Consensus        94 ~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A  173 (491)
                      .|..|.||||+|+..|+.+++++|++. +.+++..|.+|.||||+|+..|+.+++++|+++++++ +..|..|.||||+|
T Consensus        97 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A  174 (192)
T 2rfm_A           97 KDFSGKTPLMWSIIFGYSEMSYFLLEH-GANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADI-SARDLTGLTAEASA  174 (192)
T ss_dssp             CCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCBCTTSCBHHHHH
T ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHH
Confidence            677777888888877777777777776 4556677777777777777777777777777777765 56677777777777


Q ss_pred             HhCCCHHHHHHHHhcC
Q 011183          174 VKGQSCEVVKLLLEAD  189 (491)
Q Consensus       174 a~~~~~~iv~~Ll~~~  189 (491)
                      +..|+.+++++|++.+
T Consensus       175 ~~~~~~~~v~~Ll~~~  190 (192)
T 2rfm_A          175 RIFGRQEVIKIFTEVR  190 (192)
T ss_dssp             HHTTCHHHHHHHHHHH
T ss_pred             HHhCcHHHHHHHHhcc
Confidence            7777777777777654

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.97  E-value=1.3e-30  Score=248.27  Aligned_cols=198  Identities=22%  Similarity=0.193  Sum_probs=169.6

Q ss_pred             CCCCChHHHHHHHcCcHHHHHHHHh----cCCCCccc---CCCCCCCHHHHHH---HcCCHHHHHHHHhcCC--------
Q 011183           61 NRSGFDPLHIAAVQGHHAIVQVLLD----HDPSLSQT---TGPSNATPLVSAA---TRGHTAVVNELLSKDG--------  122 (491)
Q Consensus        61 ~~~g~TpLh~A~~~g~~~iv~~Ll~----~~~~l~~~---~~~~g~tpL~~A~---~~g~~~~v~~LL~~~~--------  122 (491)
                      +..|+||||.|++.|+.+.++.|++    .++++...   .|..|.||||+|+   ..|+.+++++|++.+.        
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~   81 (260)
T 3jxi_A            2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREF   81 (260)
T ss_dssp             CCCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHH
T ss_pred             ccchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhh
Confidence            5678999999999999996555555    88887422   2477999999999   7799999999998742        


Q ss_pred             --CcccccCCCCCcHHHHHHHcCCHHHHHHHHhCCcccccccC--------------CCCCCHHHHHHhCCCHHHHHHHH
Q 011183          123 --GLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTD--------------KKGQTALHMAVKGQSCEVVKLLL  186 (491)
Q Consensus       123 --~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d--------------~~g~t~Lh~Aa~~~~~~iv~~Ll  186 (491)
                        ......|.+|.||||+|+..|+.+++++|+++++++ +..|              ..|+||||+|+..|+.+++++|+
T Consensus        82 ~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll  160 (260)
T 3jxi_A           82 INSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADV-HAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLT  160 (260)
T ss_dssp             HTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHH
T ss_pred             hcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCc-CccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHH
Confidence              223445568999999999999999999999999987 5556              68999999999999999999999


Q ss_pred             h---cCcccccCCCCCCChHHHHHHHcCc---------HHHHHHHhcCCCCCc-------ccccCCCCCHHHHHhhCCCc
Q 011183          187 E---ADAAIVMLPDKFGNTALHVATRKKR---------TEIVTELLSLPDTNV-------NALTRDHKTALDIAEGLPSS  247 (491)
Q Consensus       187 ~---~~~~~~~~~d~~G~TpLh~A~~~~~---------~~iv~~Ll~~~g~~~-------~~~d~~G~t~L~~A~~~~~~  247 (491)
                      +   .|++ ++.+|..|+||||+|+..++         .+++++|++ .|+++       +.+|..|+||||+|+..++.
T Consensus       161 ~~~~~ga~-~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~-~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~  238 (260)
T 3jxi_A          161 ENGHKQAD-LRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLI-KCAKLFPDTNLEALLNNDGLSPLMMAAKTGKI  238 (260)
T ss_dssp             HCSSCCCC-TTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHH-HHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCH
T ss_pred             hccccCCC-CcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHH-hCcccccccchhhcccCCCCCHHHHHHHcCCH
Confidence            9   8888 88999999999999998887         799999999 78988       78999999999999998765


Q ss_pred             hhhHHHHHHHHHcCcccc
Q 011183          248 EEASEIKDCLARCGAVRA  265 (491)
Q Consensus       248 ~~~~~i~~~L~~~ga~~~  265 (491)
                      +    +++.|++.|....
T Consensus       239 ~----~v~~Ll~~g~~~~  252 (260)
T 3jxi_A          239 G----IFQHIIRREIADA  252 (260)
T ss_dssp             H----HHHHHHHHHHHHH
T ss_pred             H----HHHHHHHhCCCcc
Confidence            4    7888888877543

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.96  E-value=1.3e-29  Score=225.68  Aligned_cols=169  Identities=23%  Similarity=0.320  Sum_probs=89.0

Q ss_pred             CCHHHHHHHcCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcC
Q 011183           30 ETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRG  109 (491)
Q Consensus        30 ~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~~g  109 (491)
                      .||||.|+..|+.++++.|++.+.. .++..|..|.||||+|+..|+.+++++|+++|+++ +..|..|.||||+|+..|
T Consensus         3 ~~~L~~A~~~g~~~~v~~ll~~~~~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~   80 (172)
T 3v30_A            3 SLSIHQLAAQGELDQLKEHLRKGDN-LVNKPDERGFTPLIWASAFGEIETVRFLLEWGADP-HILAKERESALSLASTGG   80 (172)
T ss_dssp             -CCHHHHHHTTCHHHHHHHHTTCSG-GGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHTT
T ss_pred             hhhHHHHHHcCCHHHHHHHHHcCcc-cccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-hhhcccCCCHHHHHHHCC
Confidence            4566666666666666666665432 23445555666666666666666666666665554 444555555555555555


Q ss_pred             CHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCCHHHHHHhCCCHHHHHHHHhcC
Q 011183          110 HTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEAD  189 (491)
Q Consensus       110 ~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~~~~iv~~Ll~~~  189 (491)
                      +.+++++|++. +.+++..|..|.||||+|+..|+.+++++|++++.++ +..|..|.||||+|+..++.+++++|++++
T Consensus        81 ~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~  158 (172)
T 3v30_A           81 YTDIVGLLLER-DVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADL-TTEADSGYTPMDLAVALGYRKVQQVIENHI  158 (172)
T ss_dssp             CHHHHHHHHTT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHhCcHHHHHHHHHHH
Confidence            55555555554 3344455555555555555555555555555555544 444555555555555555555555555555


Q ss_pred             cccccCCCCCCChH
Q 011183          190 AAIVMLPDKFGNTA  203 (491)
Q Consensus       190 ~~~~~~~d~~G~Tp  203 (491)
                      ++ ...++..|.||
T Consensus       159 ~~-~~~~~~~~~~p  171 (172)
T 3v30_A          159 LK-LFQSNLVPADP  171 (172)
T ss_dssp             HH-HSCC-------
T ss_pred             HH-HhcccCCCCCC
Confidence            54 33334444443

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.96  E-value=1.7e-30  Score=256.46  Aligned_cols=241  Identities=14%  Similarity=0.063  Sum_probs=187.7

Q ss_pred             hhchhhhhccCCCCCCHHHHHHHcCCHHHHHHHHhccCcccccc---------------CCCCCChHHHHHHHcCcHHHH
Q 011183           16 EIRSSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTR---------------KNRSGFDPLHIAAVQGHHAIV   80 (491)
Q Consensus        16 ~~~~~~l~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~---------------~~~~g~TpLh~A~~~g~~~iv   80 (491)
                      -.++++++..|..|.|+++     |+.++|+.|++.|.++....               ......+.+|+|+..+..+++
T Consensus        39 l~~ga~i~~~~~~g~~~~~-----g~~~~v~~Ll~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  113 (327)
T 1sw6_A           39 LSSPLKIMKALPSPVVNDN-----EQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVN  113 (327)
T ss_dssp             TTSSCCCEECBCCCCCCCH-----HHHHHHHHHHHHHHC-------------------------------CHHHHHHHHH
T ss_pred             hhCCcccccCCCCCCcccC-----chhHHHHHHHHhccCCccccchHhhhcccccccccccCCccchhHHHHHhhHHHHH
Confidence            3468899999999999988     99999999999886543210               011112346889999999999


Q ss_pred             HHHHhcCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCC---HHHHHHHHhCCcc
Q 011183           81 QVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGH---VDVVKALLSKDPQ  157 (491)
Q Consensus        81 ~~Ll~~~~~l~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~---~~iv~~Ll~~~~~  157 (491)
                      ++|++.|+++....|..|+||||+|+..|+.+++++|+++ +++++..|.+|+||||+|+..|+   .++++.|++.+..
T Consensus       114 ~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~-Gad~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~  192 (327)
T 1sw6_A          114 DAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKH-GSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYP  192 (327)
T ss_dssp             HHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGG
T ss_pred             HHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhc
Confidence            9999999998544899999999999999999999999998 67789999999999999999998   6888888887644


Q ss_pred             cccccCCCCCCHHHHHHh----CCCHHHHHHHHhc--------------------CcccccCCCCCCChHHHHHHHcCcH
Q 011183          158 LARRTDKKGQTALHMAVK----GQSCEVVKLLLEA--------------------DAAIVMLPDKFGNTALHVATRKKRT  213 (491)
Q Consensus       158 ~~~~~d~~g~t~Lh~Aa~----~~~~~iv~~Ll~~--------------------~~~~~~~~d~~G~TpLh~A~~~~~~  213 (491)
                      ..+..|..|+||||+|++    .|+.+++++|++.                    +++ ++.+|..|.||||.|+.    
T Consensus       193 ~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~-~~~~~~~g~t~L~~a~~----  267 (327)
T 1sw6_A          193 CLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESK-PNDKNGERKDSILENLD----  267 (327)
T ss_dssp             GGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC-----------------CHHHHHCS----
T ss_pred             cccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCC-cccccccCCChhHHHHH----
Confidence            457889999999999999    8999999999987                    555 77889999999999985    


Q ss_pred             HHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCchhhHHHHHHHHHcCccccccCCCchHHHH
Q 011183          214 EIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVRANELNQPRDELR  276 (491)
Q Consensus       214 ~iv~~Ll~~~g~~~~~~d~~G~t~L~~A~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~l~  276 (491)
                        +++|++.   +++.+|..|+||||+|+..++.    +++++|+++|+..+.....+.+++.
T Consensus       268 --~~~Ll~~---~~n~~d~~G~TpLh~A~~~g~~----~~v~~Ll~~Gad~~~~d~~G~TpL~  321 (327)
T 1sw6_A          268 --LKWIIAN---MLNAQDSNGDTCLNIAARLGNI----SIVDALLDYGADPFIANKSGLRPVD  321 (327)
T ss_dssp             --HHHHHHH---TTTCCCTTSCCHHHHHHHHCCH----HHHHHHHHTTCCTTCCCTTSCCGGG
T ss_pred             --HHHHHHh---CCCCCCCCCCCHHHHHHHcCCH----HHHHHHHHcCCCCcccCCCCCCHHH
Confidence              8888883   7999999999999999997764    5889999999987766655555543

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.96  E-value=6.8e-29  Score=221.11  Aligned_cols=170  Identities=23%  Similarity=0.229  Sum_probs=153.9

Q ss_pred             CChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcC
Q 011183           64 GFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQG  143 (491)
Q Consensus        64 g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g  143 (491)
                      +.||||.|+..|+.++++.|++.++...+..|..|.||||+|+..|+.+++++|++. +.+++..|..|.||||+|+..|
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~   80 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEW-GADPHILAKERESALSLASTGG   80 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHH-TCCTTCCCTTCCCHHHHHHHTT
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCchhhcccCCCHHHHHHHCC
Confidence            568999999999999999999999987788899999999999999999999999988 5678889999999999999999


Q ss_pred             CHHHHHHHHhCCcccccccCCCCCCHHHHHHhCCCHHHHHHHHhcCcccccCCCCCCChHHHHHHHcCcHHHHHHHhcCC
Q 011183          144 HVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLP  223 (491)
Q Consensus       144 ~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~~~~~iv~~Ll~~~  223 (491)
                      +.+++++|++++.++ +..|..|+||||+|+..++.+++++|++.|++ ++.+|..|.||||+|+..++.+++++|++ .
T Consensus        81 ~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~~~~~L~~-~  157 (172)
T 3v30_A           81 YTDIVGLLLERDVDI-NIYDWNGGTPLLYAVRGNHVKCVEALLARGAD-LTTEADSGYTPMDLAVALGYRKVQQVIEN-H  157 (172)
T ss_dssp             CHHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHH-H
T ss_pred             CHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-ccccCCCCCCHHHHHHHhCcHHHHHHHHH-H
Confidence            999999999999987 77899999999999999999999999999998 78899999999999999999999999999 7


Q ss_pred             CCCcccccCCCCCH
Q 011183          224 DTNVNALTRDHKTA  237 (491)
Q Consensus       224 g~~~~~~d~~G~t~  237 (491)
                      ++++...+..|.||
T Consensus       158 ~~~~~~~~~~~~~p  171 (172)
T 3v30_A          158 ILKLFQSNLVPADP  171 (172)
T ss_dssp             HHHHSCC-------
T ss_pred             HHHHhcccCCCCCC
Confidence            99999999999887

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.96  E-value=8.4e-29  Score=218.05  Aligned_cols=157  Identities=25%  Similarity=0.335  Sum_probs=79.2

Q ss_pred             CCCHHHHHHHcCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHc
Q 011183           29 GETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATR  108 (491)
Q Consensus        29 g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~~  108 (491)
                      ..||||.|+..|+.+++++|++.+.+  ++..|..|.||||+|+. |+.+++++|+++++++ +..|..|.||||+|+..
T Consensus         5 ~~~~L~~A~~~g~~~~v~~Ll~~~~~--~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~   80 (162)
T 1ihb_A            5 WGNELASAAARGDLEQLTSLLQNNVN--VNAQNGFGRTALQVMKL-GNPEIARRLLLRGANP-DLKDRTGFAVIHDAARA   80 (162)
T ss_dssp             CHHHHHHHHHHTCHHHHHHHTTSCCC--TTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHH
T ss_pred             HhhHHHHHHHcCCHHHHHHHHhCCCC--ccccCccCccHHHHHHc-CcHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHc
Confidence            34555555555555555555554433  34445555555555555 5555555555555554 34444555555555555


Q ss_pred             CCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCCHHHHHHhCCCHHHHHHHHhc
Q 011183          109 GHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEA  188 (491)
Q Consensus       109 g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~~~~iv~~Ll~~  188 (491)
                      |+.+++++|++. +.+++..|.+|.||||+|+..|+.+++++|++++++..+..|..|.||||+|+..|+.+++++|+++
T Consensus        81 ~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~  159 (162)
T 1ihb_A           81 GFLDTLQTLLEF-QADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQAN  159 (162)
T ss_dssp             TCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             CCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHh
Confidence            555555555544 2334444445555555555555555555555544443344444444555555554555555555444


Q ss_pred             Cc
Q 011183          189 DA  190 (491)
Q Consensus       189 ~~  190 (491)
                      |+
T Consensus       160 GA  161 (162)
T 1ihb_A          160 GA  161 (162)
T ss_dssp             C-
T ss_pred             CC
Confidence            43

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.96  E-value=1.1e-28  Score=223.90  Aligned_cols=161  Identities=24%  Similarity=0.289  Sum_probs=149.6

Q ss_pred             cccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHH
Q 011183           57 LTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNAL  136 (491)
Q Consensus        57 l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpL  136 (491)
                      ++.+|..|.||||+|+..|+.+++++|+++++++ +..|..|.||||+|+..|+.+++++|++. +.+++..|..|.|||
T Consensus        28 ~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L  105 (192)
T 2rfm_A           28 RNYRDSYNRTPLMVACMLGMENAIDKLVENFDKL-EDKDIEGSTALIWAVKNNRLGIAEKLLSK-GSNVNTKDFSGKTPL  105 (192)
T ss_dssp             HTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHH-TCCTTCCCTTSCCHH
T ss_pred             HhCcCCCCCCHHHHHHHcCCHHHHHHHHHhcccc-ccccccCccHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCcHH
Confidence            4567889999999999999999999999999887 67788999999999999999999999988 566888899999999


Q ss_pred             HHHHHcCCHHHHHHHHhCCcccccccCCCCCCHHHHHHhCCCHHHHHHHHhcCcccccCCCCCCChHHHHHHHcCcHHHH
Q 011183          137 HFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIV  216 (491)
Q Consensus       137 h~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~~~~~iv  216 (491)
                      |+|+..|+.+++++|+++++++ +..|..|.||||+|+..|+.+++++|++.|++ ++.+|..|.||||+|+..|+.+++
T Consensus       106 ~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~~v  183 (192)
T 2rfm_A          106 MWSIIFGYSEMSYFLLEHGANV-NDRNLEGETPLIVASKYGRSEIVKKLLELGAD-ISARDLTGLTAEASARIFGRQEVI  183 (192)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-TTCBCTTSCBHHHHHHHTTCHHHH
T ss_pred             HHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHhCcHHHH
Confidence            9999999999999999999987 77899999999999999999999999999998 788999999999999999999999


Q ss_pred             HHHhc
Q 011183          217 TELLS  221 (491)
Q Consensus       217 ~~Ll~  221 (491)
                      ++|++
T Consensus       184 ~~Ll~  188 (192)
T 2rfm_A          184 KIFTE  188 (192)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            99987

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.96  E-value=1.4e-28  Score=216.72  Aligned_cols=159  Identities=25%  Similarity=0.325  Sum_probs=147.7

Q ss_pred             CCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHc
Q 011183           63 SGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQ  142 (491)
Q Consensus        63 ~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~  142 (491)
                      ...||||.|+..|+.+++++|+++++++ +..|..|.||||+|+. |+.+++++|++. +.+++..|..|.||||+|+..
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~   80 (162)
T 1ihb_A            4 PWGNELASAAARGDLEQLTSLLQNNVNV-NAQNGFGRTALQVMKL-GNPEIARRLLLR-GANPDLKDRTGFAVIHDAARA   80 (162)
T ss_dssp             -CHHHHHHHHHHTCHHHHHHHTTSCCCT-TCCCTTSCCHHHHCCS-SCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHH
T ss_pred             hHhhHHHHHHHcCCHHHHHHHHhCCCCc-cccCccCccHHHHHHc-CcHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHc
Confidence            3569999999999999999999999987 6788999999999999 999999999998 667888999999999999999


Q ss_pred             CCHHHHHHHHhCCcccccccCCCCCCHHHHHHhCCCHHHHHHHHhcCcccccCCCCCCChHHHHHHHcCcHHHHHHHhcC
Q 011183          143 GHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSL  222 (491)
Q Consensus       143 g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~~~~~iv~~Ll~~  222 (491)
                      |+.+++++|++++.++ +..|..|+||||+|++.|+.+++++|++.|++.++.+|..|.||||+|+..|+.+++++|++ 
T Consensus        81 ~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~-  158 (162)
T 1ihb_A           81 GFLDTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQA-  158 (162)
T ss_dssp             TCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-
T ss_pred             CCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHH-
Confidence            9999999999999887 77899999999999999999999999999998778999999999999999999999999999 


Q ss_pred             CCCC
Q 011183          223 PDTN  226 (491)
Q Consensus       223 ~g~~  226 (491)
                      .|+|
T Consensus       159 ~GAd  162 (162)
T 1ihb_A          159 NGAG  162 (162)
T ss_dssp             TC--
T ss_pred             hCCC
Confidence            6764

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.96  E-value=2.4e-28  Score=216.42  Aligned_cols=160  Identities=23%  Similarity=0.311  Sum_probs=124.5

Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCCHHHHHHH
Q 011183           28 LGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAAT  107 (491)
Q Consensus        28 ~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~  107 (491)
                      .|.||||.|+..|+.+++++|++.+.+  ++..|..|.||||+|+..|+.+++++|+++++++ +..|..|.||||+|+.
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~   78 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQENV--INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADP-QLLGKGRESALSLACS   78 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHSSC--TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHH
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcCCC--cCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHH
Confidence            577888888888888888888887644  5667778888888888888888888888887776 5667778888888888


Q ss_pred             cCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCCHHHHHHhCCCHHHHHHHHh
Q 011183          108 RGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLE  187 (491)
Q Consensus       108 ~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~~~~iv~~Ll~  187 (491)
                      .|+.+++++|++. +.+++..|.+|.||||+|+..|+.+++++|++++.++ +..|..|.||||+|+..|+.+++++|++
T Consensus        79 ~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~L~~  156 (167)
T 3v31_A           79 KGYTDIVKMLLDC-GVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADP-TIETDSGYNSMDLAVALGYRSVQQVIES  156 (167)
T ss_dssp             HTCHHHHHHHHHH-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred             cCCHHHHHHHHHC-CCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHH
Confidence            8888888888876 4556677777888888888888888888888777776 5667777788888887778888887777


Q ss_pred             cCccc
Q 011183          188 ADAAI  192 (491)
Q Consensus       188 ~~~~~  192 (491)
                      ++.+.
T Consensus       157 ~~~~~  161 (167)
T 3v31_A          157 HLLKL  161 (167)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            76653

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.96  E-value=3.1e-29  Score=241.26  Aligned_cols=192  Identities=26%  Similarity=0.280  Sum_probs=173.9

Q ss_pred             CChHHHHHHHcCcHHHHHHHHhcCCC-CcccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHH--
Q 011183           64 GFDPLHIAAVQGHHAIVQVLLDHDPS-LSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAA--  140 (491)
Q Consensus        64 g~TpLh~A~~~g~~~iv~~Ll~~~~~-l~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~--  140 (491)
                      +.+++|.|+..|+.+.++.+++.+.+ ..+..|.+|.||||+|+..|+.+++++|++.+..+++..|..|.||||+|+  
T Consensus        76 ~~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~  155 (276)
T 4hbd_A           76 CRSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALA  155 (276)
T ss_dssp             HSTTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGC
T ss_pred             hccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHH
Confidence            45789999999999999999887554 236788999999999999999999999999976688999999999999999  


Q ss_pred             ---HcCCHHHHHHHHhCCcccccccCCCCCCHHHHHHhCCCHHHHHHHHhcCcccccCCCCCCChHHHHHHHcCcHHHHH
Q 011183          141 ---RQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVT  217 (491)
Q Consensus       141 ---~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~~~~~iv~  217 (491)
                         ..++.++++.|++.+... ...|..|+||||+|+..|+.+++++|++.|++ ++.+|..|+||||+|+..|+.++++
T Consensus       156 ~~~~~~~~~~v~~Ll~~g~~~-~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad-~n~~d~~G~TpLh~A~~~g~~~iv~  233 (276)
T 4hbd_A          156 TLKTQDDIETVLQLFRLGNIN-AKASQAGQTALMLAVSHGRVDVVKALLACEAD-VNVQDDDGSTALMCACEHGHKEIAG  233 (276)
T ss_dssp             CCCSHHHHHHHHHHHHHSCTT-CCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred             HhhhhhhHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHhCCCC-CCCCCCCCCCHHHHHHHCCCHHHHH
Confidence               668999999999999765 67788999999999999999999999999999 8899999999999999999999999


Q ss_pred             HHhcCCCCCcccccCCCCCHHHHHhhCCCchhhHHHHHHHHHcC
Q 011183          218 ELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCG  261 (491)
Q Consensus       218 ~Ll~~~g~~~~~~d~~G~t~L~~A~~~~~~~~~~~i~~~L~~~g  261 (491)
                      +|++..|++++.+|..|+||||+|+..++.+    ++++|++.+
T Consensus       234 ~Ll~~~gad~~~~d~~g~TpL~~A~~~g~~~----iv~~Ll~~~  273 (276)
T 4hbd_A          234 LLLAVPSCDISLTDRDGSTALMVALDAGQSE----IASMLYSRM  273 (276)
T ss_dssp             HHHTSTTCCTTCCCTTSCCHHHHHHHHTCHH----HHHHHHHHC
T ss_pred             HHHhcCCCCCcCcCCCCCCHHHHHHHcCCHH----HHHHHHhcc
Confidence            9999789999999999999999999987654    666666554

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.96  E-value=6.3e-28  Score=213.74  Aligned_cols=155  Identities=27%  Similarity=0.344  Sum_probs=138.6

Q ss_pred             CCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHc
Q 011183           63 SGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQ  142 (491)
Q Consensus        63 ~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~  142 (491)
                      .|.||||.|+..|+.+++++|++.++++ +..|..|.||||+|+..|+.+++++|++. +.+++..|..|.||||+|+..
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~   79 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQENVI-NHTDEEGFTPLMWAAAHGQIAVVEFLLQN-GADPQLLGKGRESALSLACSK   79 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHSSCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHH
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcCCCc-CCCCCCCCCHHHHHHHCCCHHHHHHHHHc-CCCCCCcCCCCCcHHHHHHHc
Confidence            4789999999999999999999998876 67788999999999999999999999988 566788888999999999999


Q ss_pred             CCHHHHHHHHhCCcccccccCCCCCCHHHHHHhCCCHHHHHHHHhcCcccccCCCCCCChHHHHHHHcCcHHHHHHHhc
Q 011183          143 GHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLS  221 (491)
Q Consensus       143 g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~~~~~iv~~Ll~  221 (491)
                      |+.+++++|+++++++ +..|..|.||||+|+..|+.+++++|+++|++ ++.+|..|.||||+|+..|+.+++++|++
T Consensus        80 ~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~~~~~~~L~~  156 (167)
T 3v31_A           80 GYTDIVKMLLDCGVDV-NEYDWNGGTPLLYAVHGNHVKCVKMLLESGAD-PTIETDSGYNSMDLAVALGYRSVQQVIES  156 (167)
T ss_dssp             TCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred             CCHHHHHHHHHCCCCC-CcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCcHHHHHHHHH
Confidence            9999999999998887 67788899999999999999999999999888 67888999999999999999999999887

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.96  E-value=8.1e-28  Score=213.67  Aligned_cols=157  Identities=29%  Similarity=0.407  Sum_probs=102.2

Q ss_pred             CCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHH
Q 011183           61 NRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAA  140 (491)
Q Consensus        61 ~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~  140 (491)
                      ...+.||||.|+..|+.+++++|+++|+++ +..|..|.||||+|+..|+.+++++|++. +.+++..|..|.||||+|+
T Consensus        11 ~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~   88 (169)
T 2y1l_E           11 GSDLGKKLLEAARAGRDDEVRILMANGADV-NAEDASGWTPLHLAAFNGHLEIVEVLLKN-GADVNAVDHAGMTPLRLAA   88 (169)
T ss_dssp             --CHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHH
T ss_pred             CCcccchHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCccCCCCCCHHHHHH
Confidence            334456666666666666666666666665 44555666666666666666666666655 3445556666666666666


Q ss_pred             HcCCHHHHHHHHhCCcccccccCCCCCCHHHHHHhCCCHHHHHHHHhcCcccccCCCCCCChHHHHHHHcCcHHHHHHHh
Q 011183          141 RQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELL  220 (491)
Q Consensus       141 ~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~~~~~iv~~Ll  220 (491)
                      ..|+.+++++|+++++++ +..|..|+||||+|+..++.+++++|+++|++ ++.+|..|.||||+|+..++.+++++|+
T Consensus        89 ~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~~~~~~~L~  166 (169)
T 2y1l_E           89 LFGHLEIVEVLLKNGADV-NANDMEGHTPLHLAAMFGHLEIVEVLLKNGAD-VNAQDKFGKTAFDISIDNGNEDLAEILQ  166 (169)
T ss_dssp             HTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             HcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHhCCHHHHHHHH
Confidence            666666666666666665 55566677777777777777777777777666 5666667777777777777777777766


Q ss_pred             c
Q 011183          221 S  221 (491)
Q Consensus       221 ~  221 (491)
                      +
T Consensus       167 ~  167 (169)
T 2y1l_E          167 K  167 (169)
T ss_dssp             T
T ss_pred             H
Confidence            5

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.96  E-value=1.1e-27  Score=212.79  Aligned_cols=160  Identities=29%  Similarity=0.472  Sum_probs=142.5

Q ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCCHHHH
Q 011183           25 VNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVS  104 (491)
Q Consensus        25 ~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~  104 (491)
                      ....+.||||.|++.|+.+++++|++.+.+  ++..|..|.||||+|+..|+.+++++|+++++++ +..|..|.||||+
T Consensus        10 ~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~   86 (169)
T 2y1l_E           10 HGSDLGKKLLEAARAGRDDEVRILMANGAD--VNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADV-NAVDHAGMTPLRL   86 (169)
T ss_dssp             ---CHHHHHHHHHHHTCHHHHHHHHHTTCC--TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHH
T ss_pred             CCCcccchHHHHHHcCCHHHHHHHHHCCCC--CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHH
Confidence            455678899999999999999999998765  6778889999999999999999999999999887 6778899999999


Q ss_pred             HHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCCHHHHHHhCCCHHHHHH
Q 011183          105 AATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKL  184 (491)
Q Consensus       105 A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~~~~iv~~  184 (491)
                      |+..|+.+++++|++. +.+++..|.+|.||||+|+..|+.+++++|++++.++ +..|..|.||||+|++.++.+++++
T Consensus        87 A~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~  164 (169)
T 2y1l_E           87 AALFGHLEIVEVLLKN-GADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADV-NAQDKFGKTAFDISIDNGNEDLAEI  164 (169)
T ss_dssp             HHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             HHHcCCHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHhCCHHHHHH
Confidence            9999999999999987 5667888999999999999999999999999999887 7788999999999999999999999


Q ss_pred             HHhcC
Q 011183          185 LLEAD  189 (491)
Q Consensus       185 Ll~~~  189 (491)
                      |++.|
T Consensus       165 L~~~G  169 (169)
T 2y1l_E          165 LQKLN  169 (169)
T ss_dssp             HHTC-
T ss_pred             HHHcC
Confidence            98865

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.95  E-value=6.2e-28  Score=216.49  Aligned_cols=167  Identities=23%  Similarity=0.327  Sum_probs=98.8

Q ss_pred             CChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcC
Q 011183           64 GFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQG  143 (491)
Q Consensus        64 g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g  143 (491)
                      +.+|||.|+..|+.++++.|++.++...+..|..|.||||+|+..|+.+++++|++. +.+++..|.+|.||||+|+..|
T Consensus         5 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~   83 (179)
T 3f6q_A            5 FMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMR-GARINVMNRGDDTPLHLAASHG   83 (179)
T ss_dssp             --CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHcC
Confidence            445555555555555555555554433344555555555555555555555555554 3444555555666666666666


Q ss_pred             CHHHHHHHHhCCcccccccCCCCCCHHHHHHhCCCHHHHHHHHhcCcccccCCCCCCChHHHHHHHcCcHHHHHHHhcCC
Q 011183          144 HVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLP  223 (491)
Q Consensus       144 ~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~~~~~iv~~Ll~~~  223 (491)
                      +.+++++|+++++++ +..|..|.||||+|+..++.+++++|+++|++ ++.+|..|.||||+|+..++.+++++|++ .
T Consensus        84 ~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~tpl~~A~~~~~~~~~~~L~~-~  160 (179)
T 3f6q_A           84 HRDIVQKLLQYKADI-NAVNEHGNVPLHYACFWGQDQVAEDLVANGAL-VSICNKYGEMPVDKAKAPLRELLRERAEK-M  160 (179)
T ss_dssp             CHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-SSBCCTTSCCGGGGSCHHHHHHHHHHHHH-T
T ss_pred             CHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-cchhccCCCCcHHHHHHHHHHHHHHHHHH-h
Confidence            666666666666554 55566666666666666666666666666666 55666666666666666666666666666 5


Q ss_pred             CCCcccccCCC
Q 011183          224 DTNVNALTRDH  234 (491)
Q Consensus       224 g~~~~~~d~~G  234 (491)
                      |++++..+..+
T Consensus       161 g~~~~~~~~~~  171 (179)
T 3f6q_A          161 GQNLNRIPYKD  171 (179)
T ss_dssp             TCCCSCBCCCC
T ss_pred             hcCcccCCccc
Confidence            66666554443

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.95  E-value=1.9e-27  Score=207.59  Aligned_cols=149  Identities=29%  Similarity=0.386  Sum_probs=88.4

Q ss_pred             hHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCH
Q 011183           66 DPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHV  145 (491)
Q Consensus        66 TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~  145 (491)
                      ||||.|+..|+.+++++|++++++..  .+..|.||||+|+..|+.+++++|++. +.+++..|..|.||||+|+..|+.
T Consensus         4 ~~L~~A~~~g~~~~v~~Ll~~g~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~   80 (153)
T 1awc_B            4 KKLLEAARAGQDDEVRILMANGAPFT--TDWLGTSPLHLAAQYGHFSTTEVLLRA-GVSRDARTKVDRTPLHMAASEGHA   80 (153)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHTCCCC--CCTTCCCHHHHHHHHTCHHHHHHHHTT-TCCTTCCCTTCCCHHHHHHHHTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCCC--cCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHcChH
Confidence            55555555555555555555555442  344555555555555555555555554 334455555566666666666666


Q ss_pred             HHHHHHHhCCcccccccCCCCCCHHHHHHhCCCHHHHHHHHhcCcccccCCCCCCChHHHHHHHcCcHHHHHHH
Q 011183          146 DVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTEL  219 (491)
Q Consensus       146 ~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~~~~~iv~~L  219 (491)
                      +++++|+++++++ +..|..|+||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|
T Consensus        81 ~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B           81 NIVEVLLKHGADV-NAKDMLKMTALHWATEHNHQEVVELLIKYGAD-VHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHHHHTTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-ccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence            6666666665554 45566666666666666666666666666665 555666666666666666666666654

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.95  E-value=7.3e-30  Score=238.72  Aligned_cols=197  Identities=17%  Similarity=0.115  Sum_probs=160.6

Q ss_pred             HHHHHhccCccc-cccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCC
Q 011183           45 VNELLKYSTKEG-LTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGG  123 (491)
Q Consensus        45 v~~Ll~~~~~~~-l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~  123 (491)
                      ++.|++.+.+.+ .+..+..|.||||.|+..|+.+++++|+++|+++ +..|..|.||||+|+..|+.+++++|++. +.
T Consensus         1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~-ga   78 (229)
T 2vge_A            1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDP-SQPNEEGITALHNAICGANYSIVDFLITA-GA   78 (229)
T ss_dssp             ---------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TC
T ss_pred             CeehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHC-CC
Confidence            456777776543 3445667788999999999999999999999987 67888999999999999999999999988 66


Q ss_pred             cccccCCCCCcHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCCHHHHH--HhCCCHHHHHHHHhcCcccccCCCCCCC
Q 011183          124 LLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMA--VKGQSCEVVKLLLEADAAIVMLPDKFGN  201 (491)
Q Consensus       124 ~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A--a~~~~~~iv~~Ll~~~~~~~~~~d~~G~  201 (491)
                      +++..|.+|.||||+|+..|+.+++++|+++++++....+..|+||||+|  +..++.+++++|++.|++ ++.+|..|.
T Consensus        79 ~~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~-~~~~~~~~~  157 (229)
T 2vge_A           79 NVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQS-MGLMNSGAV  157 (229)
T ss_dssp             CTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHH-TTTSGGGEE
T ss_pred             CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCC-cccccCCch
Confidence            78889999999999999999999999999999998444457999999999  999999999999999998 788899999


Q ss_pred             hHHHHHHHcCcHHHHHHHhcCCCCC--cccccCCCCCHHHHHhhCCCch
Q 011183          202 TALHVATRKKRTEIVTELLSLPDTN--VNALTRDHKTALDIAEGLPSSE  248 (491)
Q Consensus       202 TpLh~A~~~~~~~iv~~Ll~~~g~~--~~~~d~~G~t~L~~A~~~~~~~  248 (491)
                      ||+|.++.....   +.|++ .|++  ++.+|..|+||||+|+..++.+
T Consensus       158 ~~l~~~~~~~~~---~~ll~-~ga~~~~~~~d~~G~TpL~~A~~~g~~~  202 (229)
T 2vge_A          158 YALWDYSAEFGD---ELSFR-EGESVTVLRRDGPEETDWWWAALHGQEG  202 (229)
T ss_dssp             EESSCBCCSSTT---BCCBC-TTCEEEEEESSCTTCSSEEEEEETTEEE
T ss_pred             HHHHHHhhcccc---ccCcc-ccccccccccCCCcccHHHHHHHcCCcc
Confidence            999976555432   45666 6877  7788999999999999887655

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.95  E-value=8.6e-28  Score=212.43  Aligned_cols=157  Identities=24%  Similarity=0.375  Sum_probs=64.9

Q ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCCHHHHH
Q 011183           26 NELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSA  105 (491)
Q Consensus        26 ~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A  105 (491)
                      |.+|+||||.|+..|+.++++.|++.+. .+....+..|.||||+|+..|+.+++++|+++++++ +..|..|.||||+|
T Consensus         5 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A   82 (165)
T 3twr_A            5 NSEADRQLLEAAKAGDVETVKKLCTVQS-VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADV-HAKDKGGLVPLHNA   82 (165)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHCCTTT-TTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHH
T ss_pred             cchhhHHHHHHHHhCCHHHHHHHHHcCC-CCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCC-CccCCCCCCHHHHH
Confidence            3344444444444444444444444321 123333444444444444444444444444444443 33334444444444


Q ss_pred             HHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCCHHHHHHhCCCHHHHHHH
Q 011183          106 ATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLL  185 (491)
Q Consensus       106 ~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~~~~iv~~L  185 (491)
                      +..|+.+++++|++. +.+++..|..|.||||+|+..|+.+++++|++++.++ +.+|..|+||||+|++ ++.+++++|
T Consensus        83 ~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~a~~-~~~~i~~~L  159 (165)
T 3twr_A           83 CSYGHYEVAELLVKH-GAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADP-TKKNRDGNTPLDLVKD-GDTDIQDLL  159 (165)
T ss_dssp             HHTTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCTGGGSCT-TCHHHHHHH
T ss_pred             HHcCcHHHHHHHHhC-CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCChhHhHhc-CChHHHHHH
Confidence            444444444444433 2233333334444444444444444444444443333 3333334444443322 333444433


Q ss_pred             Hh
Q 011183          186 LE  187 (491)
Q Consensus       186 l~  187 (491)
                      ++
T Consensus       160 ~~  161 (165)
T 3twr_A          160 RG  161 (165)
T ss_dssp             HT
T ss_pred             hh
Confidence            33

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.95  E-value=9.3e-28  Score=212.19  Aligned_cols=161  Identities=27%  Similarity=0.256  Sum_probs=147.0

Q ss_pred             CCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHH
Q 011183           60 KNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFA  139 (491)
Q Consensus        60 ~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A  139 (491)
                      .|.+|.||||.|+..|+.++++.|++.++......+..|.||||+|+..|+.+++++|++. +.+++..|.+|.||||+|
T Consensus         4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A   82 (165)
T 3twr_A            4 GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQH-GADVHAKDKGGLVPLHNA   82 (165)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHH
T ss_pred             CcchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhc-CCCCCccCCCCCCHHHHH
Confidence            4677899999999999999999999987766678888999999999999999999999998 567888999999999999


Q ss_pred             HHcCCHHHHHHHHhCCcccccccCCCCCCHHHHHHhCCCHHHHHHHHhcCcccccCCCCCCChHHHHHHHcCcHHHHHHH
Q 011183          140 ARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTEL  219 (491)
Q Consensus       140 ~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~~~~~iv~~L  219 (491)
                      +..|+.+++++|++++.++ +..|..|+||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+. ++.+++++|
T Consensus        83 ~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~a~~-~~~~i~~~L  159 (165)
T 3twr_A           83 CSYGHYEVAELLVKHGAVV-NVADLWKFTPLHEAAAKGKYEICKLLLQHGAD-PTKKNRDGNTPLDLVKD-GDTDIQDLL  159 (165)
T ss_dssp             HHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCTGGGSCT-TCHHHHHHH
T ss_pred             HHcCcHHHHHHHHhCCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CcccCCCCCChhHhHhc-CChHHHHHH
Confidence            9999999999999999997 77899999999999999999999999999998 78899999999999877 899999999


Q ss_pred             hcCCCC
Q 011183          220 LSLPDT  225 (491)
Q Consensus       220 l~~~g~  225 (491)
                      ++ .|+
T Consensus       160 ~~-~gA  164 (165)
T 3twr_A          160 RG-DAA  164 (165)
T ss_dssp             HT-C--
T ss_pred             hh-ccc
Confidence            98 443

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.95  E-value=3.6e-27  Score=205.86  Aligned_cols=151  Identities=28%  Similarity=0.385  Sum_probs=140.9

Q ss_pred             CCCHHHHHHHcCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHc
Q 011183           29 GETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATR  108 (491)
Q Consensus        29 g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~~  108 (491)
                      +.||||.|+..|+.+++++|++.+.+.  . .+..|.||||+|+..|+.+++++|+++++++ +..|..|.||||+|+..
T Consensus         2 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~--~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~   77 (153)
T 1awc_B            2 LGKKLLEAARAGQDDEVRILMANGAPF--T-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR-DARTKVDRTPLHMAASE   77 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTCCC--C-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHH
T ss_pred             ccHHHHHHHHcCCHHHHHHHHHcCCCC--C-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHc
Confidence            468999999999999999999988763  2 5888999999999999999999999999997 67889999999999999


Q ss_pred             CCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCCHHHHHHhCCCHHHHHHH
Q 011183          109 GHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLL  185 (491)
Q Consensus       109 g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~~~~iv~~L  185 (491)
                      |+.+++++|++. +.+++..|.+|.||||+|+..|+.+++++|+++++++ +..|..|.||||+|+..|+.+++++|
T Consensus        78 ~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B           78 GHANIVEVLLKH-GADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADV-HTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             TCHHHHHHHHTT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             ChHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCCHHHHHHh
Confidence            999999999987 6678889999999999999999999999999999987 77899999999999999999999987

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.95  E-value=2.3e-29  Score=236.87  Aligned_cols=210  Identities=16%  Similarity=0.145  Sum_probs=148.3

Q ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCCHHHHH
Q 011183           26 NELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSA  105 (491)
Q Consensus        26 ~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A  105 (491)
                      +..|.||||.|++.|+.+.++.|+++|.+.+   .+..|.||||.|+..|+.+++++|+++++++ +..|..|.||||+|
T Consensus         2 ~~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~---~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A   77 (239)
T 1ycs_B            2 EITGQVSLPPGKRTNLRKTGSERIAHGMRVK---FNPLPLALLLDSSLEGEFDLVQRIIYEVDDP-SLPNDEGITALHNA   77 (239)
T ss_dssp             --------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSC-CCCCTTSCCHHHHH
T ss_pred             CccccccCchhhhhhhHHHHHHHhccCCCcc---cCchhhHHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHH
Confidence            4569999999999999999999999988754   3467899999999999999999999999987 77899999999999


Q ss_pred             HHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhCCcccccccCCCCC-CHHHHH--HhCCCHHHH
Q 011183          106 ATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQ-TALHMA--VKGQSCEVV  182 (491)
Q Consensus       106 ~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~-t~Lh~A--a~~~~~~iv  182 (491)
                      +..|+.+++++|++. +.+++..|.+|.||||+|+..|+.+++++|+++++++ +..|..|. ||||+|  +..|+.+++
T Consensus        78 ~~~g~~~~v~~Ll~~-ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~~~~t~l~~a~~~~~g~~~~~  155 (239)
T 1ycs_B           78 VCAGHTEIVKFLVQF-GVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAV-FAMTYSDMQTAADKCEEMEEGYTQCS  155 (239)
T ss_dssp             HHHTCHHHHHHHHHH-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCSSSCCCHHHHCCSSSTTCCCHH
T ss_pred             HHcCCHHHHHHHHHc-CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-ceecCCCCcchHHHHHHhhhccHHHH
Confidence            999999999999988 6778999999999999999999999999999999998 55666555 999999  788999999


Q ss_pred             HHHHhcCcccccCC---------CCCCChHHHHHHHcCcHHHHHHHhcCCCCC------cccccCCCCCHHHHHhhCC
Q 011183          183 KLLLEADAAIVMLP---------DKFGNTALHVATRKKRTEIVTELLSLPDTN------VNALTRDHKTALDIAEGLP  245 (491)
Q Consensus       183 ~~Ll~~~~~~~~~~---------d~~G~TpLh~A~~~~~~~iv~~Ll~~~g~~------~~~~d~~G~t~L~~A~~~~  245 (491)
                      ++|++.+++ .+..         |..+.++++++...|.  +++.|.+ .+.+      ....+..|.+|.++....+
T Consensus       156 ~~Ll~~~a~-~~~~~~~~~~al~d~~~~~~~eLa~~~G~--~i~vl~~-~~~~~~~Ww~~~~~~~~G~~P~~yv~~~~  229 (239)
T 1ycs_B          156 QFLYGVQEK-MGIMNKGVIYALWDYEPQNDDELPMKEGD--CMTIIHR-EDEDEIEWWWARLNDKEGYVPRNLLGLYP  229 (239)
T ss_dssp             HHHHHHHHH-TTTTGGGEEEESSCBCCSSTTBCCBCSSC--EEEECCC-CTTSCSSEEEEEETTEEEEEEGGGEECCC
T ss_pred             HHHHHhhhc-ccccccceEEEEeccCCCCCCcccccCCC--EEEEEEe-cCCCCCCEEEEEECCcEEEeehHHeeECC
Confidence            999999887 3333         6778999999988886  3444433 3333      2345677888988876553

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.95  E-value=3.9e-27  Score=206.08  Aligned_cols=153  Identities=27%  Similarity=0.396  Sum_probs=88.1

Q ss_pred             CCCHHHHHHHcCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHc
Q 011183           29 GETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATR  108 (491)
Q Consensus        29 g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~~  108 (491)
                      |.||||.|+..|+.++++.|++. ...+++..|..|.||||+ +..|+.+++++|+++|+++ +..|..|.||||+|+..
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~-~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~   78 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHR-ELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASP-NVQDTSGTSPVHDAART   78 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHT-TCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHT
T ss_pred             cchHHHHHHHhCCHHHHHHHHHh-hCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHc
Confidence            34566666666666666666665 322345556666666666 6666666666666666655 44555566666666666


Q ss_pred             CCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCCHHHHHHhCCCHHHHHHHHh
Q 011183          109 GHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLE  187 (491)
Q Consensus       109 g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~~~~iv~~Ll~  187 (491)
                      |+.+++++|++. +.+++..|.+|.||||+|+..|+.+++++|++. .++ +..|..|.||||+|++.|+.+++++|++
T Consensus        79 ~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~-~~~~~~g~t~l~~A~~~~~~~~v~~Ll~  154 (156)
T 1bd8_A           79 GFLDTLKVLVEH-GADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDL-HRRDARGLTPLELALQRGAQDLVDILQG  154 (156)
T ss_dssp             TCHHHHHHHHHT-TCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCT-TCCCTTSCCHHHHHHHSCCHHHHHHHHT
T ss_pred             CcHHHHHHHHHc-CCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHh
Confidence            666666666654 344555555555555555555555555555555 333 4445555555555555555555555544

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.95  E-value=1.3e-30  Score=243.82  Aligned_cols=191  Identities=20%  Similarity=0.208  Sum_probs=167.0

Q ss_pred             hccCCCCCCHHHHHHHcCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCCHH
Q 011183           23 NEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPL  102 (491)
Q Consensus        23 ~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL  102 (491)
                      +..+.+|.||||+|+..|+.+++++|++.|.+  ++..|..|.||||+|+..|+.+++++|+++|+++ +..|..|.|||
T Consensus        15 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~--~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~-n~~d~~g~tpL   91 (229)
T 2vge_A           15 RRARLNPLVLLLDAALTGELEVVQQAVKEMND--PSQPNEEGITALHNAICGANYSIVDFLITAGANV-NSPDSHGWTPL   91 (229)
T ss_dssp             CCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSC--TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHH
T ss_pred             cccccchhHHHHHHHHcCCHHHHHHHHhcCCC--CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHH
Confidence            44555677889999999999999999998876  6778999999999999999999999999999997 67889999999


Q ss_pred             HHHHHcCCHHHHHHHHhcCCCcccccC-CCCCcHHHHH--HHcCCHHHHHHHHhCCcccccccCCCCCCHHHHHHhCCCH
Q 011183          103 VSAATRGHTAVVNELLSKDGGLLEISR-SNGKNALHFA--ARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSC  179 (491)
Q Consensus       103 ~~A~~~g~~~~v~~LL~~~~~~~~~~d-~~g~tpLh~A--~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~~~  179 (491)
                      |+|+..|+.+++++|++. +.+++..+ .+|.||||+|  +..|+.+++++|+++++++ +..|..|.|++|.++..+..
T Consensus        92 h~A~~~g~~~~v~~Ll~~-ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~-~~~~~~~~~~l~~~~~~~~~  169 (229)
T 2vge_A           92 HCAASCNDTVICMALVQH-GAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSM-GLMNSGAVYALWDYSAEFGD  169 (229)
T ss_dssp             HHHHHTTCHHHHHHHHTT-TCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHT-TTSGGGEEEESSCBCCSSTT
T ss_pred             HHHHHcCCHHHHHHHHHc-CCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCc-ccccCCchHHHHHHhhcccc
Confidence            999999999999999988 55666665 6999999999  9999999999999999987 67788899999976655433


Q ss_pred             HHHHHHHhcCccc-ccCCCCCCChHHHHHHHcCcHHHHHHHhc
Q 011183          180 EVVKLLLEADAAI-VMLPDKFGNTALHVATRKKRTEIVTELLS  221 (491)
Q Consensus       180 ~iv~~Ll~~~~~~-~~~~d~~G~TpLh~A~~~~~~~iv~~Ll~  221 (491)
                         ++|++.|+++ ++.+|.+|+||||+|+..|+.++|+.++-
T Consensus       170 ---~~ll~~ga~~~~~~~d~~G~TpL~~A~~~g~~~~v~~~~l  209 (229)
T 2vge_A          170 ---ELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPRNYF  209 (229)
T ss_dssp             ---BCCBCTTCEEEEEESSCTTCSSEEEEEETTEEEEEEGGGE
T ss_pred             ---ccCccccccccccccCCCcccHHHHHHHcCCcceeehhhh
Confidence               6778888874 57789999999999999999998876543

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.95  E-value=2.7e-27  Score=212.29  Aligned_cols=168  Identities=21%  Similarity=0.286  Sum_probs=151.3

Q ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCCHHHHHH
Q 011183           27 ELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAA  106 (491)
Q Consensus        27 ~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~  106 (491)
                      .++.||||.|+..|+.+++++|++.+. .+++..|..|.||||+|+..|+.+++++|+++|+++ +..|..|.||||+|+
T Consensus         3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~   80 (179)
T 3f6q_A            3 PEFMDDIFTQCREGNAVAVRLWLDNTE-NDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARI-NVMNRGDDTPLHLAA   80 (179)
T ss_dssp             ----CCHHHHHHHTCHHHHHHHHHCTT-SCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhcCc-ccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC-CCcCCCCCCHHHHHH
Confidence            467899999999999999999999753 346788999999999999999999999999999997 678899999999999


Q ss_pred             HcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCCHHHHHHhCCCHHHHHHHH
Q 011183          107 TRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLL  186 (491)
Q Consensus       107 ~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~~~~iv~~Ll  186 (491)
                      ..|+.+++++|++. +.+++..|.+|.||||+|+..|+.+++++|++++.++ +..|..|.||||+|+..++.+++++|+
T Consensus        81 ~~~~~~~v~~Ll~~-g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~tpl~~A~~~~~~~~~~~L~  158 (179)
T 3f6q_A           81 SHGHRDIVQKLLQY-KADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALV-SICNKYGEMPVDKAKAPLRELLRERAE  158 (179)
T ss_dssp             HTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCS-SBCCTTSCCGGGGSCHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHc-CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCc-chhccCCCCcHHHHHHHHHHHHHHHHH
Confidence            99999999999998 6678899999999999999999999999999999997 788999999999999999999999999


Q ss_pred             hcCcccccCCCCC
Q 011183          187 EADAAIVMLPDKF  199 (491)
Q Consensus       187 ~~~~~~~~~~d~~  199 (491)
                      +.|++ ++..+..
T Consensus       159 ~~g~~-~~~~~~~  170 (179)
T 3f6q_A          159 KMGQN-LNRIPYK  170 (179)
T ss_dssp             HTTCC-CSCBCCC
T ss_pred             HhhcC-cccCCcc
Confidence            99998 4544443

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.95  E-value=6.9e-27  Score=204.49  Aligned_cols=153  Identities=27%  Similarity=0.341  Sum_probs=138.2

Q ss_pred             CChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcC
Q 011183           64 GFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQG  143 (491)
Q Consensus        64 g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g  143 (491)
                      |.||||.|+..|+.++++.|+++.+...+..|..|.||||+ +..|+.+++++|++. +.+++..|..|.||||+|+..|
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~   79 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQ-GASPNVQDTSGTSPVHDAARTG   79 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTT
T ss_pred             cchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHHcC
Confidence            56899999999999999999998433347788899999999 999999999999988 6678889999999999999999


Q ss_pred             CHHHHHHHHhCCcccccccCCCCCCHHHHHHhCCCHHHHHHHHhcCcccccCCCCCCChHHHHHHHcCcHHHHHHHhc
Q 011183          144 HVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLS  221 (491)
Q Consensus       144 ~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~~~~~iv~~Ll~  221 (491)
                      +.+++++|+++++++ +..|..|+||||+|+..|+.+++++|++. ++ ++.+|.+|.||||+|+..|+.+++++|++
T Consensus        80 ~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~-~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~  154 (156)
T 1bd8_A           80 FLDTLKVLVEHGADV-NVPDGTGALPIHLAVQEGHTAVVSFLAAE-SD-LHRRDARGLTPLELALQRGAQDLVDILQG  154 (156)
T ss_dssp             CHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SC-TTCCCTTSCCHHHHHHHSCCHHHHHHHHT
T ss_pred             cHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHhChHHHHHHHHhc-cC-CCCcCCCCCCHHHHHHHcCcHHHHHHHHh
Confidence            999999999999887 77889999999999999999999999998 66 78889999999999999999999999987

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.94  E-value=1.3e-27  Score=224.95  Aligned_cols=178  Identities=19%  Similarity=0.197  Sum_probs=129.5

Q ss_pred             CCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHH
Q 011183           62 RSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAAR  141 (491)
Q Consensus        62 ~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~  141 (491)
                      ..|.||||.|+..|+.+.++.|+++|+++.  .+..|.||||.|+..|+.+++++|++. +.+++..|.+|.||||+|+.
T Consensus         3 ~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~--~~~~~~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~d~~g~t~L~~A~~   79 (239)
T 1ycs_B            3 ITGQVSLPPGKRTNLRKTGSERIAHGMRVK--FNPLPLALLLDSSLEGEFDLVQRIIYE-VDDPSLPNDEGITALHNAVC   79 (239)
T ss_dssp             ------------------------------------CHHHHHHHHHHTCHHHHHHHTST-TSSCCCCCTTSCCHHHHHHH
T ss_pred             ccccccCchhhhhhhHHHHHHHhccCCCcc--cCchhhHHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHH
Confidence            458999999999999999999999999984  347889999999999999999999988 45788999999999999999


Q ss_pred             cCCHHHHHHHHhCCcccccccCCCCCCHHHHHHhCCCHHHHHHHHhcCcccccCCCCCCC-hHHHHH--HHcCcHHHHHH
Q 011183          142 QGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGN-TALHVA--TRKKRTEIVTE  218 (491)
Q Consensus       142 ~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~~~~iv~~Ll~~~~~~~~~~d~~G~-TpLh~A--~~~~~~~iv~~  218 (491)
                      .|+.+++++|+++++++ +..|..|+||||+|+..|+.+++++|+++|++ ++.+|..|. ||||+|  +..|+.+++++
T Consensus        80 ~g~~~~v~~Ll~~ga~~-~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~~~~t~l~~a~~~~~g~~~~~~~  157 (239)
T 1ycs_B           80 AGHTEIVKFLVQFGVNV-NAADSDGWTPLHCAASCNNVQVCKFLVESGAA-VFAMTYSDMQTAADKCEEMEEGYTQCSQF  157 (239)
T ss_dssp             HTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCSSSCCCHHHHCCSSSTTCCCHHHH
T ss_pred             cCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-cceecCCCCcchHHHHHHhhhccHHHHHH
Confidence            99999999999999987 78899999999999999999999999999999 677777776 999999  78899999999


Q ss_pred             HhcCCCCCcccc---------cCCCCCHHHHHhhCC
Q 011183          219 LLSLPDTNVNAL---------TRDHKTALDIAEGLP  245 (491)
Q Consensus       219 Ll~~~g~~~~~~---------d~~G~t~L~~A~~~~  245 (491)
                      |++ .|++++..         +..+.++++++...+
T Consensus       158 Ll~-~~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G  192 (239)
T 1ycs_B          158 LYG-VQEKMGIMNKGVIYALWDYEPQNDDELPMKEG  192 (239)
T ss_dssp             HHH-HHHHTTTTGGGEEEESSCBCCSSTTBCCBCSS
T ss_pred             HHH-hhhcccccccceEEEEeccCCCCCCcccccCC
Confidence            998 68877765         566778877776544

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.94  E-value=1.5e-28  Score=245.82  Aligned_cols=227  Identities=19%  Similarity=0.159  Sum_probs=167.4

Q ss_pred             hhccCCCCCCHHHHHHHcCCHHHHHHHHhccCccc-cccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCc--ccCCCCC
Q 011183           22 VNEVNELGETALFTAADKGHIEVVNELLKYSTKEG-LTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLS--QTTGPSN   98 (491)
Q Consensus        22 l~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~-l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~--~~~~~~g   98 (491)
                      +...+.+++||||+|++.|+.++|++|++.+.+.. ....|..|.||||+|+..|+.++|++|+++|++..  +..+.+ 
T Consensus        85 l~~~g~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-  163 (376)
T 2aja_A           85 AHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-  163 (376)
T ss_dssp             HHHHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-
T ss_pred             HHHcCCCcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-
Confidence            34456778899999999999999999999876321 22345678899999999999999999999997521  122222 


Q ss_pred             CCHHHHHHHcCCHHHHHHHHhcCCCcccc--cCCCCCcHHHHHH-HcCCHHHHHHHHhCCcccccccCCCCCCHHHHHHh
Q 011183           99 ATPLVSAATRGHTAVVNELLSKDGGLLEI--SRSNGKNALHFAA-RQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVK  175 (491)
Q Consensus        99 ~tpL~~A~~~g~~~~v~~LL~~~~~~~~~--~d~~g~tpLh~A~-~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~  175 (491)
                      .||||+|+..|+.+++++|+++ +.+++.  .|.+|.||||+|+ ..|+.+++++|++.+.        .|.||||.|++
T Consensus       164 ~TpLh~Aa~~G~~eiv~~Ll~~-ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga--------~~~taL~~Aa~  234 (376)
T 2aja_A          164 YHAFRLAAENGHLHVLNRLCEL-APTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV--------MLAYAEIHEFE  234 (376)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHS-CGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH--------HHHHHHHCTTT
T ss_pred             CCHHHHHHHCCCHHHHHHHHHc-CCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCC--------ccchHHHHHHH
Confidence            8999999999999999999998 445554  7788999999999 9999999999999653        27899999999


Q ss_pred             CCCHHHHHHHHhcCcccccCCCCCCChHHHHHHHc---------------------------CcHHHHHHHhcCCCCCc-
Q 011183          176 GQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRK---------------------------KRTEIVTELLSLPDTNV-  227 (491)
Q Consensus       176 ~~~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~---------------------------~~~~iv~~Ll~~~g~~~-  227 (491)
                      +|+.+++++|++.|+++ +..|    ++++.|+..                           +..+.+++|++...++. 
T Consensus       235 ~g~~evv~lL~~~ga~~-~~~~----~~l~~A~~~g~~~vv~~~~~~~~~~~~~~li~~~~~~~~~~~~~Ll~~~~vk~l  309 (376)
T 2aja_A          235 YGEKYVNPFIARHVNRL-KEMH----DAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKAL  309 (376)
T ss_dssp             TTTTTHHHHHHHHHHHH-HHHH----TTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGG
T ss_pred             CCCHHHHHHHHhcCccc-cccc----HHHHHHHHCCChhhhcHHhhhhhHHHHHHHHHcchhhHHHHHHHHHhChhhhhh
Confidence            99999999999988763 2221    122222222                           23455666665322211 


Q ss_pred             ---ccccCCCCCHHHHHhhCCCchhhHHHHHHHHHcCcccccc
Q 011183          228 ---NALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVRANE  267 (491)
Q Consensus       228 ---~~~d~~G~t~L~~A~~~~~~~~~~~i~~~L~~~ga~~~~~  267 (491)
                         ....+.+.||||+|+..++.+    ++++|++.|.++...
T Consensus       310 ~~~g~~~n~~~~~L~~A~~~g~~e----~v~lLl~~~~v~~~~  348 (376)
T 2aja_A          310 APTATIPGDANELLRLALRLGNQG----ACALLLSIPSVLALT  348 (376)
T ss_dssp             SSCCSSTTCCCHHHHHHHHHTCTT----HHHHHTTSHHHHHSC
T ss_pred             hccCCCCCCccHHHHHHHHcCcHH----HHHHHHcChHHHHHH
Confidence               122345668899998877655    778888877665443

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.92  E-value=5.6e-25  Score=187.95  Aligned_cols=132  Identities=24%  Similarity=0.392  Sum_probs=87.9

Q ss_pred             hhhhccCCCCCCHHHHHHHcCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCC-C
Q 011183           20 SVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPS-N   98 (491)
Q Consensus        20 ~~l~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~-g   98 (491)
                      .+++..|..|.||||+|+..|+.+++++|++.+.+  ++..|..|.||||+|+. |+.+++++|+++++++ +..|.. |
T Consensus         3 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~--~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~-~~~~~~~g   78 (136)
T 1d9s_A            3 PGIHMLGGSSDAGLATAAARGQVETVRQLLEAGAD--PNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEP-NCADPATL   78 (136)
T ss_dssp             CCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCC--TTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCS-SCCBTTTT
T ss_pred             CCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCC--cCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCC-CCcCCCCC
Confidence            45666677777777777777777777777776544  45566667777777777 7777777777777665 455555 6


Q ss_pred             CCHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhCCc
Q 011183           99 ATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDP  156 (491)
Q Consensus        99 ~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~  156 (491)
                      .||||+|+..|+.+++++|++. +.+++..|..|.||||+|+..|+.+++++|+++|+
T Consensus        79 ~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Ga  135 (136)
T 1d9s_A           79 TRPVHDAAREGFLDTLVVLHRA-GARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATG  135 (136)
T ss_dssp             BCHHHHHHHHTCHHHHHHHHHT-CCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHC
T ss_pred             CCHHHHHHHcCCHHHHHHHHHc-CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            6666666666666666666665 34556666666666666666666666666666544

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.92  E-value=6e-25  Score=192.42  Aligned_cols=142  Identities=20%  Similarity=0.228  Sum_probs=80.6

Q ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCC-HHHHH
Q 011183           95 GPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQT-ALHMA  173 (491)
Q Consensus        95 ~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t-~Lh~A  173 (491)
                      +..|.||||+|+..|+.+++++|++. +.+++..|..|.||||+|+ .|+.+++++|++++.++ +..|..|+| |||+|
T Consensus         9 ~~~~~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~-~~~d~~g~ttpL~~A   85 (156)
T 1bi7_B            9 MEPSADWLATAAARGRVEEVRALLEA-GANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEP-NCADPATLTRPVHDA   85 (156)
T ss_dssp             -CCSTTHHHHHHHHTCHHHHHHHHTT-TCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCC-CCCCTTTCCCHHHHH
T ss_pred             CccchHHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCC-CCcCCCCCcHHHHHH
Confidence            44455555555555555555555554 3445555556666666653 56666666666666554 555666666 77777


Q ss_pred             HhCCCHHHHHHHHhcCcccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHH
Q 011183          174 VKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA  241 (491)
Q Consensus       174 a~~~~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~d~~G~t~L~~A  241 (491)
                      +..|+.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|++ .|++++.+|..|.||.+-+
T Consensus        86 ~~~~~~~~v~~Ll~~ga~-~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~~~~~  151 (156)
T 1bi7_B           86 AREGFLDTLVVLHRAGAR-LDVRDAWGRLPVDLAEELGHRDVARYLRA-AAGGTRGSNHARIDAAEGP  151 (156)
T ss_dssp             HHHTCHHHHHHHHHHTCC-SSCCCTTCCCHHHHHHHHTCHHHHHHHSS-CC-----------------
T ss_pred             HHCCCHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHhCHHHHHHHHHH-cCCCCCccCcCcCcccccC
Confidence            777777777777777766 66677777777777777777777777777 6777777777777776643

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.91  E-value=1.1e-24  Score=190.74  Aligned_cols=143  Identities=24%  Similarity=0.331  Sum_probs=63.2

Q ss_pred             hccCCCCCCHHHHHHHcCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCC-H
Q 011183           23 NEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNAT-P  101 (491)
Q Consensus        23 ~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~t-p  101 (491)
                      +..+..|.||||+|+..|+.+++++|++.+.+  ++..|..|.||||+|+ .|+.+++++|+++|+++ +..|..|.| |
T Consensus         6 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~--~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~-~~~d~~g~ttp   81 (156)
T 1bi7_B            6 GSSMEPSADWLATAAARGRVEEVRALLEAGAN--PNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEP-NCADPATLTRP   81 (156)
T ss_dssp             ----CCSTTHHHHHHHHTCHHHHHHHHTTTCC--TTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCC-CCCCTTTCCCH
T ss_pred             cCCCccchHHHHHHHHcCCHHHHHHHHHcCCC--CCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCC-CCcCCCCCcHH
Confidence            34445555555555555555555555554433  3444555555555553 55555555555555554 344444554 5


Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCCHHH
Q 011183          102 LVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALH  171 (491)
Q Consensus       102 L~~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh  171 (491)
                      ||+|+..|+.+++++|++. +.+++..|.+|.||||+|+..|+.+++++|++++.++ +..|..|.||.+
T Consensus        82 L~~A~~~~~~~~v~~Ll~~-ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~~~  149 (156)
T 1bi7_B           82 VHDAAREGFLDTLVVLHRA-GARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGT-RGSNHARIDAAE  149 (156)
T ss_dssp             HHHHHHHTCHHHHHHHHHH-TCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC----------------
T ss_pred             HHHHHHCCCHHHHHHHHHc-CCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCC-CccCcCcCcccc
Confidence            5555555555555555544 3334444444555555555555555555555444443 334444444433

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.91  E-value=2.4e-24  Score=183.96  Aligned_cols=132  Identities=21%  Similarity=0.251  Sum_probs=104.0

Q ss_pred             ccccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccCCC-CCc
Q 011183           56 GLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSN-GKN  134 (491)
Q Consensus        56 ~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~d~~-g~t  134 (491)
                      +++..+..|.||||.|+..|+.+++++|+++++++ +..|..|.||||+|+. |+.+++++|++. +.+++..|.. |.|
T Consensus         4 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~-g~~~~~~~~~~g~t   80 (136)
T 1d9s_A            4 GIHMLGGSSDAGLATAAARGQVETVRQLLEAGADP-NALNRFGRRPIQVMMM-GSAQVAELLLLH-GAEPNCADPATLTR   80 (136)
T ss_dssp             CCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCTTTTTSTT-SCHHHHHHHHHH-TCCSSCCBTTTTBC
T ss_pred             CccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCc-CCcCCCCCCHHHHHHc-CCHHHHHHHHHC-CCCCCCcCCCCCCC
Confidence            46677888888888888888888888888888776 5667788888888888 888888888876 4556777777 788


Q ss_pred             HHHHHHHcCCHHHHHHHHhCCcccccccCCCCCCHHHHHHhCCCHHHHHHHHhcCcc
Q 011183          135 ALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAA  191 (491)
Q Consensus       135 pLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~~~~iv~~Ll~~~~~  191 (491)
                      |||+|+..|+.+++++|+++++++ +..|..|+||||+|++.++.+++++|+++|++
T Consensus        81 ~L~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad  136 (136)
T 1d9s_A           81 PVHDAAREGFLDTLVVLHRAGARL-DVCDAWGRLPVDLAEEQGHRDIARYLHAATGD  136 (136)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTCCCC-CCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            888888888888888888887776 66677788888888888888888888777653

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.91  E-value=6e-25  Score=198.34  Aligned_cols=155  Identities=19%  Similarity=0.112  Sum_probs=106.4

Q ss_pred             CCCHHHHHHHcCCHHHHHHHHhccCccccccCC-CCCChHHHHHHHcCcH----HHHHHHHhcCCCCcccCCCCCCCHHH
Q 011183           29 GETALFTAADKGHIEVVNELLKYSTKEGLTRKN-RSGFDPLHIAAVQGHH----AIVQVLLDHDPSLSQTTGPSNATPLV  103 (491)
Q Consensus        29 g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~-~~g~TpLh~A~~~g~~----~iv~~Ll~~~~~l~~~~~~~g~tpL~  103 (491)
                      +.++|+.|++.|+.+.++.+++.+.    +..+ ..|+||||+|+..|+.    +++++|+++|+++ +.+|..|+||||
T Consensus         6 ~~~~l~~Aa~~g~~~~~~~l~~~~~----~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadv-n~~d~~g~TpLh   80 (186)
T 3t8k_A            6 EYRTVSAAAMLGTYEDFLELFEKGY----EDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADI-KSRTKEGTTLFF   80 (186)
T ss_dssp             HCSSHHHHHHHSCHHHHHHHHHHSS----SCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCS-SCCCTTCCCTHH
T ss_pred             cccHHHHHHHcCCHHHHHHHHhcCc----ccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCC-CCCCCCCCcHHH
Confidence            4678888888888888888887543    2233 6688888888888864    4888888888887 677788888888


Q ss_pred             HHHHcCC------HHHHHHHHhcCCCcccccCCCCC-cHHHHHHHcC-----CHHHHHHHHh-CCcccccccCCCCCCHH
Q 011183          104 SAATRGH------TAVVNELLSKDGGLLEISRSNGK-NALHFAARQG-----HVDVVKALLS-KDPQLARRTDKKGQTAL  170 (491)
Q Consensus       104 ~A~~~g~------~~~v~~LL~~~~~~~~~~d~~g~-tpLh~A~~~g-----~~~iv~~Ll~-~~~~~~~~~d~~g~t~L  170 (491)
                      +|+..|+      .+++++|+++ +++++..|.+|. ||||+|+..+     +.+++++|++ +++++ +.+|..|+|||
T Consensus        81 ~a~~~~~~~~~~~~~iv~~Ll~~-Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~-~~~d~~G~TpL  158 (186)
T 3t8k_A           81 PLFQGGGNDITGTTELCKIFLEK-GADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQL-LIKDKWGLTAL  158 (186)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHT-TCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCT-TCCCTTSCCHH
T ss_pred             HHHHcCCcchhhHHHHHHHHHHC-CCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCC-cccCCCCCCHH
Confidence            8888776      4566666665 455666666666 6666666633     2345666666 55554 55566666666


Q ss_pred             HHHHhCCCHHHHHHHHhcCc
Q 011183          171 HMAVKGQSCEVVKLLLEADA  190 (491)
Q Consensus       171 h~Aa~~~~~~iv~~Ll~~~~  190 (491)
                      |+|++.++.+++++|.+...
T Consensus       159 ~~A~~~~~~~~v~~L~~~~~  178 (186)
T 3t8k_A          159 EFVKRCQKPIALKMMEDYIK  178 (186)
T ss_dssp             HHHHTTTCHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHH
Confidence            66666666666666655443

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.91  E-value=5.4e-26  Score=227.25  Aligned_cols=195  Identities=18%  Similarity=0.122  Sum_probs=155.5

Q ss_pred             CCHHHHHHH-cCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCc--ccCCCCCCCHHHHHH
Q 011183           30 ETALFTAAD-KGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLS--QTTGPSNATPLVSAA  106 (491)
Q Consensus        30 ~T~Lh~Aa~-~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~--~~~~~~g~tpL~~A~  106 (491)
                      .++++.|.. .++.++++++++.+.+         +.||||.|+..|+.+++++|+++++...  ...+..|.||||+|+
T Consensus        66 ll~~~~a~~~~~~~~~~~~l~~~g~~---------~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa  136 (376)
T 2aja_A           66 LLCLYYAHYNRNAKQLWSDAHKKGIK---------SEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAA  136 (376)
T ss_dssp             HHHHHHHHTTTTCTTHHHHHHHHTCC---------HHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHcCCC---------cCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHH
Confidence            467787776 5788899999886543         4599999999999999999999987321  233456789999999


Q ss_pred             HcCCHHHHHHHHhcCCCc--ccccCCCCCcHHHHHHHcCCHHHHHHHHhCCccccc-ccCCCCCCHHHHHH-hCCCHHHH
Q 011183          107 TRGHTAVVNELLSKDGGL--LEISRSNGKNALHFAARQGHVDVVKALLSKDPQLAR-RTDKKGQTALHMAV-KGQSCEVV  182 (491)
Q Consensus       107 ~~g~~~~v~~LL~~~~~~--~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~-~~d~~g~t~Lh~Aa-~~~~~~iv  182 (491)
                      ..|+.+++++|++++...  .+..+.+ .||||+|+..|+.+++++|+++++++.. ..|..|.||||+|+ .+|+.+++
T Consensus       137 ~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv  215 (376)
T 2aja_A          137 ENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVI  215 (376)
T ss_dssp             HTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHH
T ss_pred             HcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHH
Confidence            999999999999986421  1222223 8999999999999999999999998632 26788999999999 99999999


Q ss_pred             HHHHhcCcccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCc
Q 011183          183 KLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSS  247 (491)
Q Consensus       183 ~~Ll~~~~~~~~~~d~~G~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~d~~G~t~L~~A~~~~~~  247 (491)
                      ++|++.|++        |.||||+|+..|+.+++++|++ .|++++..|.    +++.|...+..
T Consensus       216 ~~Ll~~ga~--------~~taL~~Aa~~g~~evv~lL~~-~ga~~~~~~~----~l~~A~~~g~~  267 (376)
T 2aja_A          216 NFLLDCPVM--------LAYAEIHEFEYGEKYVNPFIAR-HVNRLKEMHD----AFKLSNPDGVF  267 (376)
T ss_dssp             HHHTTSHHH--------HHHHHHCTTTTTTTTHHHHHHH-HHHHHHHHHT----TTTTTSSSSCC
T ss_pred             HHHHhCCCc--------cchHHHHHHHCCCHHHHHHHHh-cCcccccccH----HHHHHHHCCCh
Confidence            999997643        8999999999999999999998 6888776653    45555544443

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.91  E-value=1.7e-24  Score=195.40  Aligned_cols=146  Identities=18%  Similarity=0.118  Sum_probs=77.3

Q ss_pred             CHHHHHHHcCCHHHHHHHHhcCCCcccccC-CCCCcHHHHHHHcCCH----HHHHHHHhCCcccccccCCCCCCHHHHHH
Q 011183          100 TPLVSAATRGHTAVVNELLSKDGGLLEISR-SNGKNALHFAARQGHV----DVVKALLSKDPQLARRTDKKGQTALHMAV  174 (491)
Q Consensus       100 tpL~~A~~~g~~~~v~~LL~~~~~~~~~~d-~~g~tpLh~A~~~g~~----~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa  174 (491)
                      ++|+.|+..|+.+.++.++..+.   +..+ ..|+||||+|+..|+.    +++++|+++|+++ +.+|..|+||||+|+
T Consensus         8 ~~l~~Aa~~g~~~~~~~l~~~~~---~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadv-n~~d~~g~TpLh~a~   83 (186)
T 3t8k_A            8 RTVSAAAMLGTYEDFLELFEKGY---EDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADI-KSRTKEGTTLFFPLF   83 (186)
T ss_dssp             SSHHHHHHHSCHHHHHHHHHHSS---SCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCS-SCCCTTCCCTHHHHH
T ss_pred             cHHHHHHHcCCHHHHHHHHhcCc---ccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCC-CCCCCCCCcHHHHHH
Confidence            44555555555555555544321   1122 3455555555555543    3555555555554 444555555555555


Q ss_pred             hCCC------HHHHHHHHhcCcccccCCCCCCC-hHHHHHHHcC-----cHHHHHHHhcCCCCCcccccCCCCCHHHHHh
Q 011183          175 KGQS------CEVVKLLLEADAAIVMLPDKFGN-TALHVATRKK-----RTEIVTELLSLPDTNVNALTRDHKTALDIAE  242 (491)
Q Consensus       175 ~~~~------~~iv~~Ll~~~~~~~~~~d~~G~-TpLh~A~~~~-----~~~iv~~Ll~~~g~~~~~~d~~G~t~L~~A~  242 (491)
                      ..++      .+++++|+++|++ +|.+|..|+ ||||+|+..+     +.+++++|++..|++++.+|..|+||||+|.
T Consensus        84 ~~~~~~~~~~~~iv~~Ll~~Gad-in~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~  162 (186)
T 3t8k_A           84 QGGGNDITGTTELCKIFLEKGAD-ITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVK  162 (186)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCC-SSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHH
T ss_pred             HcCCcchhhHHHHHHHHHHCCCC-CCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHH
Confidence            5443      3556666666665 555666666 6666666532     2345566655456666666666666666666


Q ss_pred             hCCCchhh
Q 011183          243 GLPSSEEA  250 (491)
Q Consensus       243 ~~~~~~~~  250 (491)
                      ..+..+.+
T Consensus       163 ~~~~~~~v  170 (186)
T 3t8k_A          163 RCQKPIAL  170 (186)
T ss_dssp             TTTCHHHH
T ss_pred             HcCCHHHH
Confidence            55554433

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.90  E-value=9e-23  Score=170.91  Aligned_cols=125  Identities=40%  Similarity=0.623  Sum_probs=75.9

Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCCHHHHHHH
Q 011183           28 LGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAAT  107 (491)
Q Consensus        28 ~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~  107 (491)
                      +|.||||.|+..|+.+++++|++.+.+  ++..+..|.||||+|+..|+.+++++|+++++++ +..|..|.||||+|+.
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~--~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~l~~A~~   77 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGAD--VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAAR   77 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCC--TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHH
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCC--CCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCC-cccCCCCCcHHHHHHH
Confidence            366666666666666666666665544  4455666666666666666666666666666655 4455556666666666


Q ss_pred             cCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhCCc
Q 011183          108 RGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDP  156 (491)
Q Consensus       108 ~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~  156 (491)
                      .|+.+++++|++. +.+++..|.+|.||||+|+..|+.+++++|+++|+
T Consensus        78 ~~~~~~~~~Ll~~-g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Ga  125 (126)
T 1n0r_A           78 NGHLEVVKLLLEA-GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA  125 (126)
T ss_dssp             TTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTC
T ss_pred             cChHHHHHHHHHc-CCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCC
Confidence            6666666666655 33445555556666666666666666666555544

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.89  E-value=1.3e-22  Score=169.98  Aligned_cols=126  Identities=43%  Similarity=0.652  Sum_probs=88.1

Q ss_pred             CCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHc
Q 011183           63 SGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQ  142 (491)
Q Consensus        63 ~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~  142 (491)
                      +|.||||.|+..|+.+++++|+++++++ +..+..|.||||+|+..|+.+++++|++. +.+++..|..|.||||+|+..
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~l~~A~~~   78 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLAARN   78 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHT
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHcCcHHHHHHHHHc-CCCCcccCCCCCcHHHHHHHc
Confidence            3677777777777777777777777765 45566777777777777777777777765 445566666677777777777


Q ss_pred             CCHHHHHHHHhCCcccccccCCCCCCHHHHHHhCCCHHHHHHHHhcCcc
Q 011183          143 GHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAA  191 (491)
Q Consensus       143 g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~~~~iv~~Ll~~~~~  191 (491)
                      |+.+++++|+++++++ +..|..|.||||+|+..++.+++++|+++|++
T Consensus        79 ~~~~~~~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           79 GHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             TCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred             ChHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence            7777777777776665 55566677777777777777777777766653

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.89  E-value=4.8e-23  Score=175.87  Aligned_cols=123  Identities=28%  Similarity=0.383  Sum_probs=63.8

Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCCHHHHHHH
Q 011183           28 LGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAAT  107 (491)
Q Consensus        28 ~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~  107 (491)
                      .|.||||+|+..|+.+++++|++.+.+  ++..|..|.||||+|+..|+.+++++|+++++++ +..|..|.||||+|+.
T Consensus        13 ~~~t~l~~A~~~g~~~~v~~Ll~~g~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~   89 (136)
T 2jab_A           13 DLGKKLLEAARAGQDDEVRILMANGAD--VNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADV-NAVDAIGFTPLHLAAF   89 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHTTCC--TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHH
T ss_pred             cccHHHHHHHHhCCHHHHHHHHHcCCC--CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHHHHH
Confidence            345555555555555555555555433  3444555555555555555555555555555554 3444455555555555


Q ss_pred             cCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhC
Q 011183          108 RGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSK  154 (491)
Q Consensus       108 ~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~  154 (491)
                      .|+.+++++|++. +.+++..|.+|.||||+|+..|+.+++++|++.
T Consensus        90 ~~~~~~v~~Ll~~-g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~  135 (136)
T 2jab_A           90 IGHLEIAEVLLKH-GADVNAQDKFGKTAFDISIGNGNEDLAEILQKL  135 (136)
T ss_dssp             HTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC
T ss_pred             cCCHHHHHHHHHc-CCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHc
Confidence            5555555555544 333444455555555555555555555555443

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.89  E-value=1e-22  Score=173.88  Aligned_cols=126  Identities=25%  Similarity=0.379  Sum_probs=89.2

Q ss_pred             CCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHH
Q 011183           61 NRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAA  140 (491)
Q Consensus        61 ~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~  140 (491)
                      ...|.||||+|+..|+.+++++|+++++++ +..|..|.||||+|+..|+.+++++|++. +.+++..|.+|.||||+|+
T Consensus        11 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~d~~g~t~L~~A~   88 (136)
T 2jab_A           11 GSDLGKKLLEAARAGQDDEVRILMANGADV-NAKDEYGLTPLYLATAHGHLEIVEVLLKN-GADVNAVDAIGFTPLHLAA   88 (136)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHH
T ss_pred             cccccHHHHHHHHhCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCcCCCCCCCHHHHHH
Confidence            445667777777777777777777777776 55667777777777777777777777766 4556666777777777777


Q ss_pred             HcCCHHHHHHHHhCCcccccccCCCCCCHHHHHHhCCCHHHHHHHHhcC
Q 011183          141 RQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEAD  189 (491)
Q Consensus       141 ~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~~~~iv~~Ll~~~  189 (491)
                      ..|+.+++++|+++++++ +..|..|+||||+|+..++.+++++|++.|
T Consensus        89 ~~~~~~~v~~Ll~~g~~~-~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           89 FIGHLEIAEVLLKHGADV-NAQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             HHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             HcCCHHHHHHHHHcCCCC-cCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            777777777777776665 556667777777777777777777776654

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.88  E-value=4.1e-23  Score=194.75  Aligned_cols=111  Identities=25%  Similarity=0.291  Sum_probs=59.6

Q ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCCHHHHHH
Q 011183           27 ELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAA  106 (491)
Q Consensus        27 ~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~  106 (491)
                      .+|.||||+|+..|+.++++.|++ +.+  ++..|..|.||||+|+..|+.+++++|+++|+++....+..|.||||+|+
T Consensus        43 ~~g~t~L~~A~~~g~~~~v~~Ll~-~~~--~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~  119 (244)
T 3ui2_A           43 SEYETPWWTAARKADEQALSQLLE-DRD--VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAA  119 (244)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHTTT-TCC--TTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHH
T ss_pred             cCCCCHHHHHHHcCCHHHHHHHHc-CCC--CCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHH
Confidence            345555555555555555555555 332  34455555555555555555555555555555553222244555555555


Q ss_pred             HcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHH
Q 011183          107 TRGHTAVVNELLSKDGGLLEISRSNGKNALHFAAR  141 (491)
Q Consensus       107 ~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~  141 (491)
                      ..|+.+++++|++. +.+++..|..|.||||+|+.
T Consensus       120 ~~g~~~~v~~Ll~~-ga~~~~~d~~g~t~l~~A~~  153 (244)
T 3ui2_A          120 GYVRPEVVEALVEL-GADIEVEDERGLTALELARE  153 (244)
T ss_dssp             HTTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHH
T ss_pred             HcCCHHHHHHHHHC-CCCCCCCCCCCCcHHHHHHH
Confidence            55555555555554 34445555555555555553

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.88  E-value=5.4e-23  Score=184.98  Aligned_cols=142  Identities=22%  Similarity=0.229  Sum_probs=107.8

Q ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCCHHHH
Q 011183           25 VNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVS  104 (491)
Q Consensus        25 ~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~  104 (491)
                      .|.+|.||||+|+..|+.++++.|++ +.+  ++..|..|.||||+|+..|+.+++++|+++|+++....+..|.||||+
T Consensus        40 ~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~--~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~  116 (183)
T 3deo_A           40 VVSEYETPWWTAARKADEQALSQLLE-DRD--VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHM  116 (183)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHTT-TSC--TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHH
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHh-cCC--CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHH
Confidence            45677888888888888888888888 544  566788888888888888888888888888888743333778888888


Q ss_pred             HHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCCHHHHHHhCCCHHHHHH
Q 011183          105 AATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKL  184 (491)
Q Consensus       105 A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~~~~iv~~  184 (491)
                      |+..|+.+++++|++. +.+++..|.+|.||||+|+..++                  ...+.++|++|++.|..+++++
T Consensus       117 A~~~~~~~~v~~Ll~~-ga~~~~~d~~g~tpl~~A~~~~~------------------~~~~~~~l~~a~~~~~~~i~~~  177 (183)
T 3deo_A          117 AAGYVRPEVVEALVEL-GADIEVEDERGLTALELAREILK------------------TTPKGNPMQFGRRIGLEKVINV  177 (183)
T ss_dssp             HHHTTCHHHHHHHHHH-TCCTTCCCTTSCCHHHHHHHHHH------------------TCCCCSHHHHHHHHHHHHHHHH
T ss_pred             HHhcCcHHHHHHHHHc-CCCCcCCCCCCCCHHHHHHHhcc------------------CcccccHHHHHHHcCHHHHHHH
Confidence            8888888888888877 56677778888888888876432                  1345677777777777777777


Q ss_pred             HHhc
Q 011183          185 LLEA  188 (491)
Q Consensus       185 Ll~~  188 (491)
                      |.++
T Consensus       178 L~~~  181 (183)
T 3deo_A          178 LEGQ  181 (183)
T ss_dssp             HHTC
T ss_pred             HHHh
Confidence            7653

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.88  E-value=5.7e-23  Score=175.54  Aligned_cols=127  Identities=31%  Similarity=0.430  Sum_probs=90.6

Q ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCCHHH
Q 011183           24 EVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLV  103 (491)
Q Consensus        24 ~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~  103 (491)
                      .+|.+|.||||+|+..|+.+++++|++.+.+  ++..|..|.||||+|+..|+.+++++|+++++++ +..|..|.||||
T Consensus         5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~--~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~   81 (137)
T 3c5r_A            5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSD--PNVKDHAGWTPLHEACNHGHLKVVELLLQHKALV-NTTGYQNDSPLH   81 (137)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC--SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCGGGCCHHH
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC--CCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcc-cCcCCCCCCHHH
Confidence            4577777777777777777777777776654  4566777777777777777777777777777775 556667777777


Q ss_pred             HHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhC
Q 011183          104 SAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSK  154 (491)
Q Consensus       104 ~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~  154 (491)
                      +|+..|+.+++++|++. +.+++..|.+|.||||+|+..+..+++++|.+.
T Consensus        82 ~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~  131 (137)
T 3c5r_A           82 DAAKNGHVDIVKLLLSY-GASRNAVNIFGLRPVDYTDDESMKSLLLLPEKN  131 (137)
T ss_dssp             HHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCGGGGCCCHHHHHHHSCC---
T ss_pred             HHHHcCCHHHHHHHHHc-CCCCCCCCCCCCCHHHHHhhccHHHHHhhcccc
Confidence            77777777777777766 555666777777777777776666666655544

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.87  E-value=3.2e-22  Score=179.93  Aligned_cols=163  Identities=20%  Similarity=0.230  Sum_probs=133.8

Q ss_pred             HHcCCHHHHHHHHhccCccc---------cccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCCHHHHHHH
Q 011183           37 ADKGHIEVVNELLKYSTKEG---------LTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAAT  107 (491)
Q Consensus        37 a~~g~~~~v~~Ll~~~~~~~---------l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~  107 (491)
                      ++.|..+.+++|++.+....         ....+..|.||||.|+..|+.++++.|++ ++++ +..|..|+||||+|+.
T Consensus         8 a~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~-~~~d~~g~t~L~~A~~   85 (183)
T 3deo_A            8 SRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSEYETPWWTAARKADEQALSQLLE-DRDV-DAVDENGRTALLFVAG   85 (183)
T ss_dssp             EEEETTTEEEEEEEETTCCCCEEEEGGGSCHHHHHHHHHHHHHHHHTTCHHHHHHHTT-TSCT-TCCCTTSCCHHHHHHH
T ss_pred             HHhcCCchhHHHHHHhCCCCccccchhcccccCCCCCCCHHHHHHHcCCHHHHHHHHh-cCCC-CCcCCCCCCHHHHHHH
Confidence            44455555666664432211         11235578999999999999999999999 7776 6788999999999999


Q ss_pred             cCCHHHHHHHHhcCCCcccccC-CCCCcHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCCHHHHHHhCCCHHHHHHHH
Q 011183          108 RGHTAVVNELLSKDGGLLEISR-SNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLL  186 (491)
Q Consensus       108 ~g~~~~v~~LL~~~~~~~~~~d-~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~~~~iv~~Ll  186 (491)
                      .|+.+++++|++. +.+++..| .+|.||||+|+..|+.+++++|+++++++ +.+|..|+||||+|++.++        
T Consensus        86 ~~~~~~v~~Ll~~-ga~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~--------  155 (183)
T 3deo_A           86 LGSDKCVRLLAEA-GADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADI-EVEDERGLTALELAREILK--------  155 (183)
T ss_dssp             HTCHHHHHHHHHT-TCCTTCCCSSSSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHHHH--------
T ss_pred             cCCHHHHHHHHHc-CCCCCcCCCCCCCCHHHHHHhcCcHHHHHHHHHcCCCC-cCCCCCCCCHHHHHHHhcc--------
Confidence            9999999999988 55677677 88999999999999999999999999987 7789999999999986321        


Q ss_pred             hcCcccccCCCCCCChHHHHHHHcCcHHHHHHHhc
Q 011183          187 EADAAIVMLPDKFGNTALHVATRKKRTEIVTELLS  221 (491)
Q Consensus       187 ~~~~~~~~~~d~~G~TpLh~A~~~~~~~iv~~Ll~  221 (491)
                                ...+.+||++|+..|..+++++|.+
T Consensus       156 ----------~~~~~~~l~~a~~~~~~~i~~~L~~  180 (183)
T 3deo_A          156 ----------TTPKGNPMQFGRRIGLEKVINVLEG  180 (183)
T ss_dssp             ----------TCCCCSHHHHHHHHHHHHHHHHHHT
T ss_pred             ----------CcccccHHHHHHHcCHHHHHHHHHH
Confidence                      2357899999999999999999876

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.87  E-value=2.7e-22  Score=189.13  Aligned_cols=167  Identities=21%  Similarity=0.209  Sum_probs=136.6

Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCCHHHHHHH
Q 011183           28 LGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAAT  107 (491)
Q Consensus        28 ~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~  107 (491)
                      .+.+++.+++..|+.+.+..+...+     ...+..|.||||.|+..|+.++++.|++ ++++ +..|..|.||||+|+.
T Consensus        14 ~~~~~~l~~~~~g~~~~~~~~~~~~-----~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~-~~~d~~g~t~L~~A~~   86 (244)
T 3ui2_A           14 EGAMEYLIEWKDGHSPSWVPSSYIA-----ADVVSEYETPWWTAARKADEQALSQLLE-DRDV-DAVDENGRTALLFVAG   86 (244)
T ss_dssp             TTEEEEEEEESSCCCCEEEEGGGSC-----HHHHHHHHHHHHHHHTTTCHHHHHHTTT-TCCT-TCBCTTSCBHHHHHHH
T ss_pred             CCccHHHHHHHcCCCcccccccccc-----cccccCCCCHHHHHHHcCCHHHHHHHHc-CCCC-CCcCCCCCCHHHHHHH
Confidence            3455555666666555444333322     1234568999999999999999999999 8776 6788999999999999


Q ss_pred             cCCHHHHHHHHhcCCCcccccC-CCCCcHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCCHHHHHHhCCCHHHHHHHH
Q 011183          108 RGHTAVVNELLSKDGGLLEISR-SNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLL  186 (491)
Q Consensus       108 ~g~~~~v~~LL~~~~~~~~~~d-~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~~~~iv~~Ll  186 (491)
                      .|+.+++++|++. +.+++..+ ..|.||||+|+..|+.+++++|+++++++ +..|..|+||||+|+..+         
T Consensus        87 ~g~~~~v~~Ll~~-ga~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~d~~g~t~l~~A~~~~---------  155 (244)
T 3ui2_A           87 LGSDKCVRLLAEA-GADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADI-EVEDERGLTALELAREIL---------  155 (244)
T ss_dssp             HTCHHHHHHHHHT-TCCTTCCCSSSCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHH---------
T ss_pred             CCCHHHHHHHHHc-CCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCcHHHHHHHHH---------
Confidence            9999999999988 56677677 78999999999999999999999999987 778999999999998521         


Q ss_pred             hcCcccccCCCCCCChHHHHHHHcCcHHHHHHHhc
Q 011183          187 EADAAIVMLPDKFGNTALHVATRKKRTEIVTELLS  221 (491)
Q Consensus       187 ~~~~~~~~~~d~~G~TpLh~A~~~~~~~iv~~Ll~  221 (491)
                               .+..+.||||+|+..|+.+++++|++
T Consensus       156 ---------~~~~~~~~l~~a~~~g~~~iv~~L~~  181 (244)
T 3ui2_A          156 ---------KTTPKGNPMQFGRRIGLEKVINVLEG  181 (244)
T ss_dssp             ---------TTCCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred             ---------hccCCCCHHHHHHHcChHHHHHHHHH
Confidence                     23568999999999999999999987

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.86  E-value=2.5e-22  Score=171.50  Aligned_cols=111  Identities=29%  Similarity=0.347  Sum_probs=49.4

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCCHHHHHHhCCCHHHHHHHHhcCcccccCCCCCCChHHHHHH
Q 011183          129 RSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVAT  208 (491)
Q Consensus       129 d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~  208 (491)
                      |.+|.||||+|+..|+.+++++|++.+.++ +..|..|+||||+|+..++.+++++|++.+++ ++.+|..|+||||+|+
T Consensus         7 ~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~   84 (137)
T 3c5r_A            7 NHRGETLLHIASIKGDIPSVEYLLQNGSDP-NVKDHAGWTPLHEACNHGHLKVVELLLQHKAL-VNTTGYQNDSPLHDAA   84 (137)
T ss_dssp             CTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCGGGCCHHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCc-ccCcCCCCCCHHHHHH
Confidence            344444444444444444444444444433 33344444444444444444444444444444 3344444444444444


Q ss_pred             HcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHh
Q 011183          209 RKKRTEIVTELLSLPDTNVNALTRDHKTALDIAE  242 (491)
Q Consensus       209 ~~~~~~iv~~Ll~~~g~~~~~~d~~G~t~L~~A~  242 (491)
                      ..++.+++++|++ .|++++.+|..|.||+|+|.
T Consensus        85 ~~~~~~~v~~Ll~-~ga~~~~~~~~g~tpl~~A~  117 (137)
T 3c5r_A           85 KNGHVDIVKLLLS-YGASRNAVNIFGLRPVDYTD  117 (137)
T ss_dssp             HTTCHHHHHHHHH-TTCCTTCCCTTSCCGGGGCC
T ss_pred             HcCCHHHHHHHHH-cCCCCCCCCCCCCCHHHHHh
Confidence            4444444444444 34444444444444444443

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.86  E-value=1.2e-21  Score=190.58  Aligned_cols=139  Identities=22%  Similarity=0.234  Sum_probs=109.5

Q ss_pred             CCCHHHHHHHcCCHHHHHHHHhcCCCcccc------cCCCCCcHHHHHHHc---CCHHHHHHHHhCCcccccccCCCCCC
Q 011183           98 NATPLVSAATRGHTAVVNELLSKDGGLLEI------SRSNGKNALHFAARQ---GHVDVVKALLSKDPQLARRTDKKGQT  168 (491)
Q Consensus        98 g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~------~d~~g~tpLh~A~~~---g~~~iv~~Ll~~~~~~~~~~d~~g~t  168 (491)
                      +.++|+.|+..|+.+.++.|++.+ .+++.      .+..|.||||+|+..   |+.+++++|+++++++ +..|..|+|
T Consensus       151 ~~~~L~~A~~~g~~~~v~~ll~~g-~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadv-n~~d~~G~T  228 (301)
T 2b0o_E          151 EPQRLWTAICNRDLLSVLEAFANG-QDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHL-DAKAADGNT  228 (301)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHHHTT-CCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCT-TCCCTTCCC
T ss_pred             hHHHHhhhhhccCHHHHHHHHhcC-CcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCC-CCCCCCCCC
Confidence            446788888888888888888764 44444      577888999998886   7888999999888886 677888899


Q ss_pred             HHHHHHhCCCHHHHHHHHhcCcccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCC
Q 011183          169 ALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPS  246 (491)
Q Consensus       169 ~Lh~Aa~~~~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~d~~G~t~L~~A~~~~~  246 (491)
                      |||+|+..|+.+++++|++.|++ ++.+|..|.||||+|+..++.+++++|++ .|++      .|.||||+|+..+.
T Consensus       229 pLh~A~~~g~~~~v~~Ll~~gad-~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~-~ga~------~g~tpLh~A~~~g~  298 (301)
T 2b0o_E          229 ALHYAALYNQPDCLKLLLKGRAL-VGTVNEAGETALDIARKKHHKECEELLEQ-AQAG------TFAFPLHVDYSWVI  298 (301)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCC-CSCCCTTSCCHHHHHHHHTCHHHHHHHHH-HHHH------TTSSCCC-------
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHH-hcCC------CCCChhHHHHhcCC
Confidence            99999998999999999988888 77888889999999998888999888888 5665      47889998887654

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.86  E-value=3.8e-22  Score=185.04  Aligned_cols=132  Identities=25%  Similarity=0.326  Sum_probs=76.4

Q ss_pred             hhccCCCCCCHHHHHHHcCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhc-CCCCcccCCCCCCC
Q 011183           22 VNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDH-DPSLSQTTGPSNAT  100 (491)
Q Consensus        22 l~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~-~~~l~~~~~~~g~t  100 (491)
                      ++..|.+|.||||+|+..|+.++++.|++.+.+  ++..|..|.||||+|+..|+.+++++|+++ ++++ +..|..|.|
T Consensus        66 v~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~-~~~d~~g~t  142 (222)
T 3ehr_A           66 VAEQAESIDNPLHEAAKRGNLSWLRECLDNRVG--VNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIEL-NQQNKLGDT  142 (222)
T ss_dssp             HHHHEEEESCHHHHHHHHTCHHHHHHHHHTTCC--TTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCC-CCCCTTSCC
T ss_pred             ccccccccccccccccccCcHHHHHHHHhCCCC--ccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCc-cccCCCCCC
Confidence            444555666666666666666666666665544  455566666666666666666666666666 5554 455566666


Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhCCcc
Q 011183          101 PLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQ  157 (491)
Q Consensus       101 pL~~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~  157 (491)
                      |||+|+..|+.+++++|++. +++++..|.+|.||||+|+..|+.++++.|++.+..
T Consensus       143 pL~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~  198 (222)
T 3ehr_A          143 ALHAAAWKGYADIVQLLLAK-GARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAV  198 (222)
T ss_dssp             HHHHHHHHTCHHHHHHHHHH-TCCSCCCCTTSCCHHHHCCSHHHHHHHC--------
T ss_pred             HHHHHHHcCCHHHHHHHHHc-CCCCccccCCCCCHHHHhcchhHHHHHHHHhccchh
Confidence            66666666666666666655 444555666666666666666666666666655544

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.85  E-value=1.2e-21  Score=164.01  Aligned_cols=110  Identities=26%  Similarity=0.407  Sum_probs=62.2

Q ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCCHHHHH
Q 011183           26 NELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSA  105 (491)
Q Consensus        26 ~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A  105 (491)
                      +..|.||||+|+..|+.+++++|++.+.+  ++..|..|.||||+|+..|+.+++++|+++++++ +..|..|.||||+|
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~tpL~~A   80 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAKGED--VNRTLEGGRKPLHYAADCGQLEILEFLLLKGADI-NAPDKHHITPLLSA   80 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHTTCC--TTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCT-TCCCTTSCCHHHHH
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHcCCC--cCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHHH
Confidence            34455666666666666666666665443  4455555666666666666666666666665554 44555555666666


Q ss_pred             HHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHH
Q 011183          106 ATRGHTAVVNELLSKDGGLLEISRSNGKNALHFA  139 (491)
Q Consensus       106 ~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A  139 (491)
                      +..|+.+++++|++. +.+++..|.+|.||||+|
T Consensus        81 ~~~~~~~~v~~Ll~~-ga~~~~~~~~g~t~l~~A  113 (123)
T 3aaa_C           81 VYEGHVSCVKLLLSK-GADKTVKGPDGLTAFEAT  113 (123)
T ss_dssp             HHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHC
T ss_pred             HHcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHh
Confidence            666666666555555 344555555555555555

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.85  E-value=1.3e-21  Score=190.24  Aligned_cols=145  Identities=23%  Similarity=0.247  Sum_probs=124.0

Q ss_pred             CCCCCChHHHHHHHcCcHHHHHHHHhcCCCCccc-----CCCCCCCHHHHHHHc---CCHHHHHHHHhcCCCcccccCCC
Q 011183           60 KNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQT-----TGPSNATPLVSAATR---GHTAVVNELLSKDGGLLEISRSN  131 (491)
Q Consensus        60 ~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~-----~~~~g~tpL~~A~~~---g~~~~v~~LL~~~~~~~~~~d~~  131 (491)
                      ....+.++||.|+..|+.+.++.|++.++++...     .+..|.||||+|+..   |+.+++++|++. +.+++..|.+
T Consensus       147 ~~~~~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~-gadvn~~d~~  225 (301)
T 2b0o_E          147 RCTPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQN-GGHLDAKAAD  225 (301)
T ss_dssp             CCC-CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHH-SSCTTCCCTT
T ss_pred             ccCchHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhc-CCCCCCCCCC
Confidence            3444668999999999999999999999998442     688999999999997   899999999998 6678889999


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCCHHHHHHhCCCHHHHHHHHhcCcccccCCCCCCChHHHHHHHcC
Q 011183          132 GKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKK  211 (491)
Q Consensus       132 g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~~  211 (491)
                      |.||||+|+..|+.+++++|+++++++ +..|..|.||||+|+..++.+++++|++++++       .|.||||+|+..|
T Consensus       226 G~TpLh~A~~~g~~~~v~~Ll~~gad~-~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~-------~g~tpLh~A~~~g  297 (301)
T 2b0o_E          226 GNTALHYAALYNQPDCLKLLLKGRALV-GTVNEAGETALDIARKKHHKECEELLEQAQAG-------TFAFPLHVDYSWV  297 (301)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHTTCCC-SCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH-------TTSSCCC------
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC-------CCCChhHHHHhcC
Confidence            999999999999999999999999997 78899999999999999999999999999987       4899999999988


Q ss_pred             cH
Q 011183          212 RT  213 (491)
Q Consensus       212 ~~  213 (491)
                      +.
T Consensus       298 ~~  299 (301)
T 2b0o_E          298 IS  299 (301)
T ss_dssp             --
T ss_pred             Cc
Confidence            64

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.85  E-value=8.2e-22  Score=182.82  Aligned_cols=134  Identities=27%  Similarity=0.323  Sum_probs=60.7

Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhC-CcccccccCCCCCCHHHHHHh
Q 011183           97 SNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSK-DPQLARRTDKKGQTALHMAVK  175 (491)
Q Consensus        97 ~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~-~~~~~~~~d~~g~t~Lh~Aa~  175 (491)
                      .|.||||+|+..|+.+++++|++. +.+++..|..|.||||+|+..|+.+++++|++. +.++ +..|..|+||||+|+.
T Consensus        72 ~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~-~~~d~~g~tpL~~A~~  149 (222)
T 3ehr_A           72 SIDNPLHEAAKRGNLSWLRECLDN-RVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIEL-NQQNKLGDTALHAAAW  149 (222)
T ss_dssp             EESCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCC-CCCCTTSCCHHHHHHH
T ss_pred             ccccccccccccCcHHHHHHHHhC-CCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCc-cccCCCCCCHHHHHHH
Confidence            344455555544555555444443 233444444555555555555555555555554 3333 4445555555555555


Q ss_pred             CCCHHHHHHHHhcCcccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCcccccCCC
Q 011183          176 GQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDH  234 (491)
Q Consensus       176 ~~~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~d~~G  234 (491)
                      .|+.+++++|+++|++ ++.+|..|.||||+|+..++.++++.|++ .+++.+..|.+|
T Consensus       150 ~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~~l~~l~~-~~~~~~~~~~~~  206 (222)
T 3ehr_A          150 KGYADIVQLLLAKGAR-TDLRNIEKKLAFDMATNAACASLLKKKQG-TDAVRTLSNAED  206 (222)
T ss_dssp             HTCHHHHHHHHHHTCC-SCCCCTTSCCHHHHCCSHHHHHHHC-----------------
T ss_pred             cCCHHHHHHHHHcCCC-CccccCCCCCHHHHhcchhHHHHHHHHhc-cchhhhccchhh
Confidence            5555555555555555 44555555555555555555555555555 455444444433

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.85  E-value=5e-21  Score=160.23  Aligned_cols=111  Identities=27%  Similarity=0.330  Sum_probs=92.7

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCCHHHHHHhCCCHHHHHHHHhcCcccccCCCCCCChHHHHHH
Q 011183          129 RSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVAT  208 (491)
Q Consensus       129 d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~  208 (491)
                      +..|.||||.|+..|+.++++.|++.++++ +..|..|+||||+|+..++.+++++|++.|++ ++.+|..|+||||+|+
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~d~~g~tpL~~A~   81 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDV-NRTLEGGRKPLHYAADCGQLEILEFLLLKGAD-INAPDKHHITPLLSAV   81 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHTTCCT-TSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCC-TTCCCTTSCCHHHHHH
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHcCCCc-CccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-CCcCCCCCCCHHHHHH
Confidence            456778888888888888888888888776 66788888888888888888888888888888 7778888888888888


Q ss_pred             HcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHh
Q 011183          209 RKKRTEIVTELLSLPDTNVNALTRDHKTALDIAE  242 (491)
Q Consensus       209 ~~~~~~iv~~Ll~~~g~~~~~~d~~G~t~L~~A~  242 (491)
                      ..++.+++++|++ .|++++.+|..|.||+|+|.
T Consensus        82 ~~~~~~~v~~Ll~-~ga~~~~~~~~g~t~l~~A~  114 (123)
T 3aaa_C           82 YEGHVSCVKLLLS-KGADKTVKGPDGLTAFEATD  114 (123)
T ss_dssp             HHTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHCC
T ss_pred             HcCCHHHHHHHHH-cCCCCCCcCCCCCCHHHHhC
Confidence            8888888888888 68888888888888888884

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.84  E-value=7.2e-21  Score=182.84  Aligned_cols=120  Identities=26%  Similarity=0.342  Sum_probs=62.5

Q ss_pred             CHHHHHHHcCCHHHHHHHHhcCCCc-----ccccCCCCCcHHHHHHHc---CCHHHHHHHHhCCcccccccCCCCCCHHH
Q 011183          100 TPLVSAATRGHTAVVNELLSKDGGL-----LEISRSNGKNALHFAARQ---GHVDVVKALLSKDPQLARRTDKKGQTALH  171 (491)
Q Consensus       100 tpL~~A~~~g~~~~v~~LL~~~~~~-----~~~~d~~g~tpLh~A~~~---g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh  171 (491)
                      ++|+.|+..|+.+.+..+++.+...     ++..|..|.||||+|+..   |+.+++++|+++++++ +..|..|+||||
T Consensus       132 ~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~i-n~~d~~g~TpLh  210 (278)
T 1dcq_A          132 HSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNL-DKQTGKGSTALH  210 (278)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCT-TCCCTTCCCHHH
T ss_pred             hhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCc-cccCCCCCCHHH
Confidence            4555555555555555555443221     222344555555555555   4555555555555554 444555555555


Q ss_pred             HHHhCCCHHHHHHHHhcCcccccCCCCCCChHHHHHHHcCcHHHHHHHhc
Q 011183          172 MAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLS  221 (491)
Q Consensus       172 ~Aa~~~~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~~~~~iv~~Ll~  221 (491)
                      +|+..|+.+++++|+++|++ ++.+|.+|.||||+|+..|+.+++++|++
T Consensus       211 ~A~~~g~~~~v~~Ll~~gad-~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~  259 (278)
T 1dcq_A          211 YCCLTDNAECLKLLLRGKAS-IEIANESGETPLDIAKRLKHEHCEELLTQ  259 (278)
T ss_dssp             HHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHcCCC-CCCccCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            55555555555555555555 44555555555555555555555555554

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.83  E-value=3.2e-20  Score=178.28  Aligned_cols=196  Identities=18%  Similarity=0.182  Sum_probs=147.5

Q ss_pred             cCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHH
Q 011183           59 RKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHF  138 (491)
Q Consensus        59 ~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~  138 (491)
                      ..|..+.++|+.+...|+..+.+++...-+.........+...    ....+.-..+++...........+....++|+.
T Consensus        61 ~~d~~~~~~l~~~~~~GN~~~n~i~e~~l~~~~~~kP~~~s~~----~~~~~fI~aKYl~~~f~~~~~~~~~~~l~~l~~  136 (278)
T 1dcq_A           61 TLDVLGTSELLLAKNIGNAGFNEIMECCLPSEDPVKPNPGSDM----IARKDYITAKYMERRYARKKHADTAAKLHSLCE  136 (278)
T ss_dssp             TTSCCCGGGGHHHHHSCHHHHHHHHTTTCCSSSCCSCCTTCCH----HHHHHHHHHHHTTCTTSCCCSSSHHHHHHHHHH
T ss_pred             ecCCCCHHHHHHHHHcCcHHHHHHHHhhCChhhcCCCCCCCCH----HHHHHHHHHHHHHhhcccccccccchhhhhhhh
Confidence            3577888999999999998887776554333211011111111    111111222233333222222222334579999


Q ss_pred             HHHcCCHHHHHHHHhCCcccc-----cccCCCCCCHHHHHHhC---CCHHHHHHHHhcCcccccCCCCCCChHHHHHHHc
Q 011183          139 AARQGHVDVVKALLSKDPQLA-----RRTDKKGQTALHMAVKG---QSCEVVKLLLEADAAIVMLPDKFGNTALHVATRK  210 (491)
Q Consensus       139 A~~~g~~~iv~~Ll~~~~~~~-----~~~d~~g~t~Lh~Aa~~---~~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~  210 (491)
                      |+..|+.+.++.+++.+++..     +..|..|+||||+|+..   ++.+++++|+++|++ ++.+|..|+||||+|+..
T Consensus       137 a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~-in~~d~~g~TpLh~A~~~  215 (278)
T 1dcq_A          137 AVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGN-LDKQTGKGSTALHYCCLT  215 (278)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSC-TTCCCTTCCCHHHHHHHT
T ss_pred             HhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCC-ccccCCCCCCHHHHHHHc
Confidence            999999999999999998863     34488999999999998   899999999999999 889999999999999999


Q ss_pred             CcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCchhhHHHHHHHHHcCccc
Q 011183          211 KRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVR  264 (491)
Q Consensus       211 ~~~~iv~~Ll~~~g~~~~~~d~~G~t~L~~A~~~~~~~~~~~i~~~L~~~ga~~  264 (491)
                      |+.+++++|++ .|++++.+|..|+||||+|+..++.    +++++|+++|+.+
T Consensus       216 g~~~~v~~Ll~-~gad~~~~d~~g~tpL~~A~~~~~~----~~v~~Ll~~ga~~  264 (278)
T 1dcq_A          216 DNAECLKLLLR-GKASIEIANESGETPLDIAKRLKHE----HCEELLTQALSGR  264 (278)
T ss_dssp             TCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCH----HHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHH-cCCCCCCccCCCCCHHHHHHHcCCH----HHHHHHHHcCCCC
Confidence            99999999999 8999999999999999999998764    4788888888754

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.80  E-value=1.6e-19  Score=179.74  Aligned_cols=147  Identities=22%  Similarity=0.244  Sum_probs=94.2

Q ss_pred             CCCCChHHHHHHHc-CcHHHHHHHHhcCCCCcccCC--CCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHH
Q 011183           61 NRSGFDPLHIAAVQ-GHHAIVQVLLDHDPSLSQTTG--PSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALH  137 (491)
Q Consensus        61 ~~~g~TpLh~A~~~-g~~~iv~~Ll~~~~~l~~~~~--~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh  137 (491)
                      +..+.|+||.|+.. |+.++++.|+++|+++ +..+  ..|.||||+|+..|+.+++++|++. +.+++..|.+|.||||
T Consensus       196 ~~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadv-n~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~-Gadvn~~d~~G~TpLh  273 (368)
T 3jue_A          196 SLHPGALLFRASGHPPSLPTMADALAHGADV-NWVNGGQDNATPLIQATAANSLLACEFLLQN-GANVNQADSAGRGPLH  273 (368)
T ss_dssp             -CCHHHHHHHHTSSSCCHHHHHHHHHTTCCT-TCCCTTTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHH
T ss_pred             cCCCCcHHHHHHHccCCHHHHHHHHHcCCCC-CccccccCCCCHHHHHHHCCCHHHHHHHHHc-CCCCCCCCCCCCCHHH
Confidence            33456777777777 7777777777777776 3444  6677777777777777777777776 5566777777778888


Q ss_pred             HHHHcCCHHHHHHHHhCCcccccccCCCCCCHHHHHHhCCCHHHHHHHHhcCccc--ccCCCCCCChHHHHHHHc
Q 011183          138 FAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAI--VMLPDKFGNTALHVATRK  210 (491)
Q Consensus       138 ~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~~~~iv~~Ll~~~~~~--~~~~d~~G~TpLh~A~~~  210 (491)
                      +|+..|+.+++++|+++++++ +..|..|.||||+|+..++.+++++|++.+...  ....+..+.|+++++...
T Consensus       274 ~A~~~g~~~~v~~LL~~Gad~-~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~~  347 (368)
T 3jue_A          274 HATILGHTGLACLFLKRGADL-GARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDF  347 (368)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC----------------------
T ss_pred             HHHHcCcHHHHHHHHHCcCCC-CCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHHH
Confidence            888777888888888777776 667777888888888888888887777665321  223455677777777654

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.80  E-value=2.9e-19  Score=177.90  Aligned_cols=149  Identities=19%  Similarity=0.198  Sum_probs=114.1

Q ss_pred             CCCCCCCHHHHHHHc-CCHHHHHHHHhcCCCcccccC--CCCCcHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCCHH
Q 011183           94 TGPSNATPLVSAATR-GHTAVVNELLSKDGGLLEISR--SNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTAL  170 (491)
Q Consensus        94 ~~~~g~tpL~~A~~~-g~~~~v~~LL~~~~~~~~~~d--~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~L  170 (491)
                      .+..+.||||.|+.. |+.++++.|++. +.+++..+  .+|.||||+|+..|+.+++++|++++.++ +..|..|+|||
T Consensus       195 ~~~~~~t~L~~Aa~~~g~~~~v~~LL~~-Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadv-n~~d~~G~TpL  272 (368)
T 3jue_A          195 GSLHPGALLFRASGHPPSLPTMADALAH-GADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANV-NQADSAGRGPL  272 (368)
T ss_dssp             --CCHHHHHHHHTSSSCCHHHHHHHHHT-TCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHH
T ss_pred             ccCCCCcHHHHHHHccCCHHHHHHHHHc-CCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCCCCCCCCHH
Confidence            334567899999999 999999999987 56677777  88999999999999999999999999987 78899999999


Q ss_pred             HHHHhCCCHHHHHHHHhcCcccccCCCCCCChHHHHHHHcCcHHHHHHHhcC--CCCCcccccCCCCCHHHHHhhCC
Q 011183          171 HMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSL--PDTNVNALTRDHKTALDIAEGLP  245 (491)
Q Consensus       171 h~Aa~~~~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~~~~~iv~~Ll~~--~g~~~~~~d~~G~t~L~~A~~~~  245 (491)
                      |+|+..|+.+++++|+++|++ ++.+|.+|.||||+|+..++.+++++|++.  .+.+....+..+.|+++++....
T Consensus       273 h~A~~~g~~~~v~~LL~~Gad-~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~~~  348 (368)
T 3jue_A          273 HHATILGHTGLACLFLKRGAD-LGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDFS  348 (368)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC-----------------------
T ss_pred             HHHHHcCcHHHHHHHHHCcCC-CCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHHHH
Confidence            999999999999999999999 788999999999999999999999999862  23455567788899999987654

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.79  E-value=1.6e-19  Score=149.02  Aligned_cols=109  Identities=38%  Similarity=0.481  Sum_probs=96.4

Q ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCCHHHHHHhCCCHHHHHHHHhcCcccccCCCCCCChHHHH
Q 011183          127 ISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHV  206 (491)
Q Consensus       127 ~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~  206 (491)
                      ..|.+|.||||+|+..|+.+++++|+++++++ +..|..|+||||+|+..++.+++++|++.|++ ++.+|..|+||||+
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~d~~g~tpl~~   81 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADV-NARSKDGNTPLHLAAKNGHAEIVKLLLAKGAD-VNARSKDGNTPEHL   81 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCS-SCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCC-TTCCCTTCCCTTHH
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCC-CcccCCCCCCHHHH
Confidence            46788999999999999999999999998886 67788999999999999999999999999988 78889999999999


Q ss_pred             HHHcCcHHHHHHHhcCCCCCcccccCCCCCHH
Q 011183          207 ATRKKRTEIVTELLSLPDTNVNALTRDHKTAL  238 (491)
Q Consensus       207 A~~~~~~~iv~~Ll~~~g~~~~~~d~~G~t~L  238 (491)
                      |+..++.+++++|++ .|+++|.++..|.+|-
T Consensus        82 A~~~~~~~~~~~Ll~-~ga~~n~~~~~~~~~~  112 (115)
T 2l6b_A           82 AKKNGHHEIVKLLDA-KGADVNARSWGSSHHH  112 (115)
T ss_dssp             HHTTTCHHHHHHHHT-TSSSHHHHSCCCC---
T ss_pred             HHHCCCHHHHHHHHH-cCCCCCcCCccccccc
Confidence            999999999999998 7999999999998874

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.79  E-value=4.6e-19  Score=140.44  Aligned_cols=91  Identities=47%  Similarity=0.685  Sum_probs=61.9

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCCHHHHHHhCCCHHHHHHHHhcCcccccCCCCCCChHHHHHHHcC
Q 011183          132 GKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKK  211 (491)
Q Consensus       132 g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~~  211 (491)
                      |+||||+|+..|+.+++++|++.++++ +.+|..|+||||+|+..++.+++++|++.|++ ++.+|.+|+||||+|+..|
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~~g~~~-n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~d~~g~t~l~~A~~~~   79 (93)
T 1n0q_A            2 GRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNG   79 (93)
T ss_dssp             -CCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTT
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcC
Confidence            666777777777777777777766665 55666677777777777777777777777666 5666667777777777777


Q ss_pred             cHHHHHHHhcCCCC
Q 011183          212 RTEIVTELLSLPDT  225 (491)
Q Consensus       212 ~~~iv~~Ll~~~g~  225 (491)
                      +.+++++|++ .|+
T Consensus        80 ~~~~~~~Ll~-~ga   92 (93)
T 1n0q_A           80 HLEVVKLLLE-AGA   92 (93)
T ss_dssp             CHHHHHHHHH-TTC
T ss_pred             CHHHHHHHHH-cCC
Confidence            7777777766 444

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.79  E-value=6.7e-19  Score=139.51  Aligned_cols=91  Identities=38%  Similarity=0.582  Sum_probs=65.3

Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCCHHHHHHH
Q 011183           28 LGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAAT  107 (491)
Q Consensus        28 ~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~  107 (491)
                      +|+||||+|+..|+.+++++|++.+.+  ++.+|..|.||||+|+..|+.+++++|+++|+++ +..|..|.||||+|+.
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~--~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~t~l~~A~~   77 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGAD--VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAAR   77 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCC--TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHH
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCC--CcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHH
Confidence            467777777777777777777776654  5666777777777777777777777777777776 5666777777777777


Q ss_pred             cCCHHHHHHHHhcC
Q 011183          108 RGHTAVVNELLSKD  121 (491)
Q Consensus       108 ~g~~~~v~~LL~~~  121 (491)
                      .|+.+++++|++.+
T Consensus        78 ~~~~~~~~~Ll~~g   91 (93)
T 1n0q_A           78 NGHLEVVKLLLEAG   91 (93)
T ss_dssp             TTCHHHHHHHHHTT
T ss_pred             cCCHHHHHHHHHcC
Confidence            77777777777653

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.77  E-value=8.5e-19  Score=144.64  Aligned_cols=108  Identities=30%  Similarity=0.428  Sum_probs=76.8

Q ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCCHHH
Q 011183           24 EVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLV  103 (491)
Q Consensus        24 ~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~  103 (491)
                      .+|.+|.||||+|+..|+.+++++|++.+.+  ++..|..|.||||+|+..|+.+++++|+++|+++ +..|..|.||||
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~--~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~d~~g~tpl~   80 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGAD--VNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADV-NARSKDGNTPEH   80 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCC--SSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCT-TCCCTTCCCTTH
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC--CCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC-cccCCCCCCHHH
Confidence            3567777777777777777777777776654  5566777777777777777777777777777776 556667777777


Q ss_pred             HHHHcCCHHHHHHHHhcCCCcccccCCCCCcH
Q 011183          104 SAATRGHTAVVNELLSKDGGLLEISRSNGKNA  135 (491)
Q Consensus       104 ~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tp  135 (491)
                      +|+..|+.+++++|+++ +++++..+..|.+|
T Consensus        81 ~A~~~~~~~~~~~Ll~~-ga~~n~~~~~~~~~  111 (115)
T 2l6b_A           81 LAKKNGHHEIVKLLDAK-GADVNARSWGSSHH  111 (115)
T ss_dssp             HHHTTTCHHHHHHHHTT-SSSHHHHSCCCC--
T ss_pred             HHHHCCCHHHHHHHHHc-CCCCCcCCcccccc
Confidence            77777777777777766 45566666666665

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.69  E-value=5.4e-17  Score=132.79  Aligned_cols=96  Identities=22%  Similarity=0.319  Sum_probs=66.5

Q ss_pred             hhhhhccCCCCCCHHHHHHHcCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCC
Q 011183           19 SSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSN   98 (491)
Q Consensus        19 ~~~l~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g   98 (491)
                      +......|.+|.||||+|+..|+.+++++|++.+.+  ++..|..|.||||+|+..|+.+++++|+++|+++ +..|..|
T Consensus        14 ~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~--i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g   90 (110)
T 2zgd_A           14 VPRGSHMGSDLGKKLLEAARAGQDDEVRILMANGAD--VAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADV-XAQDKFG   90 (110)
T ss_dssp             --------CCHHHHHHHHHHHTCHHHHHHHHHTTCC--TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTS
T ss_pred             CCcccccCCccchHHHHHHHcCCHHHHHHHHHcCCC--CCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccccCC
Confidence            444556677777888888888888888888776654  5666777778888888878888888887777776 5667777


Q ss_pred             CCHHHHHHHcCCHHHHHHH
Q 011183           99 ATPLVSAATRGHTAVVNEL  117 (491)
Q Consensus        99 ~tpL~~A~~~g~~~~v~~L  117 (491)
                      .||||+|+..|+.+++++|
T Consensus        91 ~tpl~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           91 KTAFDISIDNGNEDLAEIL  109 (110)
T ss_dssp             CCHHHHHHHHTCHHHHHHH
T ss_pred             CcHHHHHHHcCCHHHHHHh
Confidence            7777777777777777655

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.66  E-value=2.2e-16  Score=129.09  Aligned_cols=93  Identities=37%  Similarity=0.463  Sum_probs=73.1

Q ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCCHHHHHHhCCCHHHHHHHHhcCcccccCCCCCCChHH
Q 011183          125 LEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTAL  204 (491)
Q Consensus       125 ~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~~~~iv~~Ll~~~~~~~~~~d~~G~TpL  204 (491)
                      ....|.+|.||||+|+..|+.+++++|++.++++ +..|..|+||||+|+..|+.+++++|+++|++ ++.+|..|+|||
T Consensus        17 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i-~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~-~~~~d~~g~tpl   94 (110)
T 2zgd_A           17 GSHMGSDLGKKLLEAARAGQDDEVRILMANGADV-AAKDKNGSTPLHLAARNGHLEVVKLLLEAGAD-VXAQDKFGKTAF   94 (110)
T ss_dssp             -----CCHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHH
T ss_pred             ccccCCccchHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-ccccccCCCcHH
Confidence            3456677888888888888888888888888776 66678888888888888888888888888887 677888888888


Q ss_pred             HHHHHcCcHHHHHHH
Q 011183          205 HVATRKKRTEIVTEL  219 (491)
Q Consensus       205 h~A~~~~~~~iv~~L  219 (491)
                      |+|+..++.+++++|
T Consensus        95 ~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           95 DISIDNGNEDLAEIL  109 (110)
T ss_dssp             HHHHHHTCHHHHHHH
T ss_pred             HHHHHcCCHHHHHHh
Confidence            888888888888765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	491
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	2e-28
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	1e-18
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	4e-07
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	6e-04
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	6e-28
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-26
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-24
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	4e-24
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-20
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-09
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	3e-27
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	3e-22
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-17
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	1e-09
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	6e-08
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	4e-23
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-19
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	1e-20
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	4e-13
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	0.001
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-19
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	4e-06
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	5e-18
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	2e-17
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	2e-09
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	5e-09
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	9e-09
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	1e-07
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	1e-17
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	1e-13
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	6e-10
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	1e-09
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	3e-08
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	1e-07
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	9e-04
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	6e-17
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-12
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	4e-05
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-04
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	7e-17
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	1e-08
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	4e-07
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	8e-17
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	2e-11
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	2e-09
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	1e-08
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	0.003
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	4e-14
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	6e-09
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	2e-07
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	4e-09
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	6e-08
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	2e-05
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	4e-04
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	1e-08
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	1e-06
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	2e-06
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	6e-08
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	1e-07
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	2e-05
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	4e-05
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	0.003
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	7e-08
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	4e-07
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	8e-08
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	2e-07
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	0.001
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	9e-08
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	6e-07
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	4e-06
d1myoa_	118	d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus)	5e-06
d1myoa_	118	d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus)	4e-05
d1myoa_	118	d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus)	4e-04

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score =  113 bits (283), Expect = 2e-28
 Identities = 41/243 (16%), Positives = 68/243 (27%), Gaps = 46/243 (18%)

Query: 21  VVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIV 80
           +V  +      A   AA+ GH+ V+N L + +  E +       +    +AA  GH  ++
Sbjct: 118 IVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVL 177

Query: 81  QVLLDHDPSLSQTT----------------------------GPSNATPLVSAATRGHTA 112
             L +  P+ +                                   A   +     G   
Sbjct: 178 NRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKY 237

Query: 113 VVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHM 172
           V   +      L E       +A   +   G  D+V        +            L  
Sbjct: 238 VNPFIARHVNRLKE-----MHDAFKLSNPDGVFDLVT-------KSECLQGFYMLRNLIR 285

Query: 173 AVKGQSCEVVKLLLEADAAIVMLPD----KFGNTALHVATRKKRTEIVTELLSLPDTNVN 228
                  + ++ LL       + P        N  L +A R         LLS+P   V 
Sbjct: 286 RNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPS--VL 343

Query: 229 ALT 231
           ALT
Sbjct: 344 ALT 346

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 84.9 bits (209), Expect = 1e-18
 Identities = 29/189 (15%), Positives = 62/189 (32%), Gaps = 15/189 (7%)

Query: 57  LTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTT----------GPSNATPLVSAA 106
           L   +      + +   +    + Q+L  +    ++            G  +      AA
Sbjct: 39  LMTLSYKEAIHIFLPGTKNMEQVRQLLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAA 98

Query: 107 TRGHTAVVN--ELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDP-QLARRTD 163
             G ++ ++   LL     ++++ ++    A   AA  GH+ V+  L    P ++     
Sbjct: 99  ITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQ 158

Query: 164 KKGQTALHMAVKGQSCEVVKLLLE--ADAAIVMLPDKFGNTALHVATRKKRTEIVTELLS 221
            +   A  +A +     V+  L E     A  M+  +        A  +    ++  LL 
Sbjct: 159 AENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLD 218

Query: 222 LPDTNVNAL 230
            P     A 
Sbjct: 219 CPVMLAYAE 227

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 49.5 bits (117), Expect = 4e-07
 Identities = 11/74 (14%), Positives = 22/74 (29%), Gaps = 3/74 (4%)

Query: 16  EIRSSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFD---PLHIAA 72
           ++ +             L    D+  ++ +  LL     + L        D    L +A 
Sbjct: 266 DLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLAL 325

Query: 73  VQGHHAIVQVLLDH 86
             G+     +LL  
Sbjct: 326 RLGNQGACALLLSI 339

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 39.5 bits (91), Expect = 6e-04
 Identities = 15/118 (12%), Positives = 30/118 (25%), Gaps = 12/118 (10%)

Query: 136 LHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAI--- 192
           L         ++ +  +S +         K    + +       +V +LL    A     
Sbjct: 16  LRLIPWILWENLFQHFISANELSLMTLSYKEAIHIFLPGTKNMEQVRQLLCLYYAHYNRN 75

Query: 193 -------VMLPDKFGNTALHVATRKKRTEIV--TELLSLPDTNVNALTRDHKTALDIA 241
                               VA     +  +    LL   D  V  +  ++  A  +A
Sbjct: 76  AKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLA 133

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  113 bits (282), Expect = 6e-28
 Identities = 65/220 (29%), Positives = 95/220 (43%), Gaps = 7/220 (3%)

Query: 22  VNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQ 81
            N  N   ET L  AA  GH EV   LL+   K  +  K +    PLH AA  GH  +V+
Sbjct: 26  PNVSNVKVETPLHMAARAGHTEVAKYLLQNKAK--VNAKAKDDQTPLHCAARIGHTNMVK 83

Query: 82  VLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAAR 141
           +LL+++ + +     +     +  A R         L +           G   LH AA+
Sbjct: 84  LLLENNANPNLA--TTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAK 141

Query: 142 QGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGN 201
            G V V + LL +D        K G T LH+AV   + ++VKLLL    +    P   G 
Sbjct: 142 YGKVRVAELLLERDAHP-NAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGS-PHSPAWNGY 199

Query: 202 TALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 241
           T LH+A ++ + E+   LL     + NA +    T L +A
Sbjct: 200 TPLHIAAKQNQVEVARSLLQ-YGGSANAESVQGVTPLHLA 238

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  109 bits (272), Expect = 1e-26
 Identities = 66/252 (26%), Positives = 96/252 (38%), Gaps = 38/252 (15%)

Query: 22  VNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQ 81
              + + G T L  AA  G + V   LL+           ++G  PLH+A    +  IV+
Sbjct: 125 QACMTKKGFTPLHVAAKYGKVRVAELLLERDAH--PNAAGKNGLTPLHVAVHHNNLDIVK 182

Query: 82  VLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAAR 141
           +LL    S       +  TPL  AA +    V   LL   G     S   G   LH AA+
Sbjct: 183 LLLPRGGSPHSPAW-NGYTPLHIAAKQNQVEVARSLLQYGGSANAESV-QGVTPLHLAAQ 240

Query: 142 QGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAI--------- 192
           +GH ++V  LLSK        +K G T LH+  +     V  +L++    +         
Sbjct: 241 EGHAEMVALLLSKQANGNLG-NKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYT 299

Query: 193 -----------------------VMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNA 229
                                  V    K G + LH A ++  T+IVT LL     + N 
Sbjct: 300 PLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKN-GASPNE 358

Query: 230 LTRDHKTALDIA 241
           ++ D  T L IA
Sbjct: 359 VSSDGTTPLAIA 370

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  103 bits (257), Expect = 1e-24
 Identities = 58/212 (27%), Positives = 90/212 (42%), Gaps = 6/212 (2%)

Query: 22  VNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQ 81
            +     G T L  AA +  +EV   LL+Y        ++  G  PLH+AA +GH  +V 
Sbjct: 191 PHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSA--NAESVQGVTPLHLAAQEGHAEMVA 248

Query: 82  VLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAAR 141
           +LL    + +     S  TPL   A  GH  V + L+   G +++ +   G   LH A+ 
Sbjct: 249 LLLSKQANGNLGNK-SGLTPLHLVAQEGHVPVADVLIKH-GVMVDATTRMGYTPLHVASH 306

Query: 142 QGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGN 201
            G++ +VK  L +         K G + LH A +    ++V LLL+  A+        G 
Sbjct: 307 YGNIKLVK-FLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASP-NEVSSDGT 364

Query: 202 TALHVATRKKRTEIVTELLSLPDTNVNALTRD 233
           T L +A R     +   L  + D     L  D
Sbjct: 365 TPLAIAKRLGYISVTDVLKVVTDETSFVLVSD 396

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (253), Expect = 4e-24
 Identities = 62/206 (30%), Positives = 80/206 (38%), Gaps = 36/206 (17%)

Query: 67  PLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLE 126
           PLH+A+  GH  IV+ LL    S + +      TPL  AA  GHT V   LL      + 
Sbjct: 3   PLHVASFMGHLPIVKNLLQRGASPNVSNV-KVETPLHMAARAGHTEVAKYLLQN-KAKVN 60

Query: 127 ISRSNGKNALHFAARQGHVDVVKALLSKDPQLARR------------------------- 161
               + +  LH AAR GH ++VK LL  +                               
Sbjct: 61  AKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLE 120

Query: 162 -------TDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTE 214
                    KKG T LH+A K     V +LLLE DA       K G T LHVA      +
Sbjct: 121 KEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHP-NAAGKNGLTPLHVAVHHNNLD 179

Query: 215 IVTELLSLPDTNVNALTRDHKTALDI 240
           IV  LL     + ++   +  T L I
Sbjct: 180 IVKLLLPR-GGSPHSPAWNGYTPLHI 204

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.0 bits (227), Expect = 1e-20
 Identities = 51/174 (29%), Positives = 70/174 (40%), Gaps = 35/174 (20%)

Query: 100 TPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLA 159
           TPL  A+  GH  +V  LL + G    +S    +  LH AAR GH +V K LL    ++ 
Sbjct: 2   TPLHVASFMGHLPIVKNLLQR-GASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVN 60

Query: 160 RRTDKKGQTALHMAVKGQSCEVVKLLLEADA----------------------------- 190
            +  K  QT LH A +     +VKLLLE +A                             
Sbjct: 61  AK-AKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALL 119

Query: 191 ---AIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 241
              A      K G T LHVA +  +  +   LL   D + NA  ++  T L +A
Sbjct: 120 EKEASQACMTKKGFTPLHVAAKYGKVRVAELLLER-DAHPNAAGKNGLTPLHVA 172

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.9 bits (136), Expect = 2e-09
 Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 2/83 (2%)

Query: 1   MVGNLSGAEFDTEVAEIRSSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRK 60
            V +  G     +      + VN   +LG + L  AA +GH ++V  LLK          
Sbjct: 302 HVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGAS--PNEV 359

Query: 61  NRSGFDPLHIAAVQGHHAIVQVL 83
           +  G  PL IA   G+ ++  VL
Sbjct: 360 SSDGTTPLAIAKRLGYISVTDVL 382

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  108 bits (270), Expect = 3e-27
 Identities = 63/278 (22%), Positives = 94/278 (33%), Gaps = 49/278 (17%)

Query: 29  GETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDP 88
               L  A     +++V +LL+        ++   G+ PLH A       IV++LL H  
Sbjct: 5   DNHLLIKAVQNEDVDLVQQLLEGGANVN-FQEEEGGWTPLHNAVQMSREDIVELLLRHGA 63

Query: 89  SL--------------------------------SQTTGPSNATPLVSAATRGHTAVVNE 116
                                                      T  + AA  G    +  
Sbjct: 64  DPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKF 123

Query: 117 LLSKDGGL---------LEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQ 167
           L  +   +          E  R  G  AL  AA +GHV+V+K LL +        D  G+
Sbjct: 124 LYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGR 183

Query: 168 TALHM---AVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPD 224
            AL     +      E +  LL    A V +  + G T L +A  KK   +V  LL    
Sbjct: 184 NALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEH 243

Query: 225 TNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGA 262
             +N    D KTAL +A       +  +I + L + GA
Sbjct: 244 IEINDTDSDGKTALLLA----VELKLKKIAELLCKRGA 277

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.6 bits (234), Expect = 3e-22
 Identities = 52/250 (20%), Positives = 87/250 (34%), Gaps = 50/250 (20%)

Query: 26  NELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLD 85
            E G T L  A      ++V  LL++        + ++G  P  +AA+ G   ++++ L 
Sbjct: 36  EEGGWTPLHNAVQMSREDIVELLLRHGADP--VLRKKNGATPFLLAAIAGSVKLLKLFLS 93

Query: 86  HDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGL---------LEISRSNGKNAL 136
                         T  + AA  G    +  L  +   +          E  R  G  AL
Sbjct: 94  KGAD-VNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATAL 152

Query: 137 HFAARQGHVDVVKALLSKDP-------------------------------QLARR---- 161
             AA +GHV+V+K LL +                                  L       
Sbjct: 153 MDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADV 212

Query: 162 --TDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTEL 219
               ++G+T L +AV+ +   +V+ LLE +   +   D  G TAL +A   K  +I   L
Sbjct: 213 NVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELL 272

Query: 220 LSLPDTNVNA 229
                 + + 
Sbjct: 273 CKR-GASTDC 281

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.4 bits (197), Expect = 2e-17
 Identities = 37/137 (27%), Positives = 61/137 (44%), Gaps = 6/137 (4%)

Query: 22  VNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHH---- 77
              + + G TAL  AA+KGH+EV+  LL     + +   +  G + L  A +        
Sbjct: 141 QERLRKGGATALMDAAEKGHVEVLKILLDEMGAD-VNACDNMGRNALIHALLSSDDSDVE 199

Query: 78  AIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALH 137
           AI  +LLDH   ++        TPL+ A  + H  +V  LL ++   +  + S+GK AL 
Sbjct: 200 AITHLLLDHGADVNVRGE-RGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALL 258

Query: 138 FAARQGHVDVVKALLSK 154
            A       + + L  +
Sbjct: 259 LAVELKLKKIAELLCKR 275

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.9 bits (136), Expect = 1e-09
 Identities = 17/59 (28%), Positives = 30/59 (50%)

Query: 128 SRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLL 186
           +     + L  A +   VD+V+ LL     +  + ++ G T LH AV+    ++V+LLL
Sbjct: 1   AAVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLL 59

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.9 bits (123), Expect = 6e-08
 Identities = 16/52 (30%), Positives = 27/52 (51%)

Query: 165 KGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIV 216
           +    L  AV+ +  ++V+ LLE  A +    ++ G T LH A +  R +IV
Sbjct: 4   EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIV 55

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 95.4 bits (236), Expect = 4e-23
 Identities = 47/211 (22%), Positives = 80/211 (37%), Gaps = 6/211 (2%)

Query: 33  LFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQ 92
           +   A  G +E + E +  + K   TR ++     LH A   GH  IV+        +  
Sbjct: 7   VCNLAYSGKLEELKESIL-ADKSLATRTDQDSRTALHWACSAGHTEIVEF--LLQLGVPV 63

Query: 93  TTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALL 152
                     +  A       + + L   G  +     NG   LH+AA +   ++   LL
Sbjct: 64  NDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLL 123

Query: 153 SKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKR 212
                   + D    TA+H     +    +  +L    A   + D  GNT LH+A  ++R
Sbjct: 124 EGGANPDAK-DHYEATAMHR-AAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEER 181

Query: 213 TEIVTELLSLPDTNVNALTRDHKTALDIAEG 243
            E    L+S    ++    ++ KT L +A+G
Sbjct: 182 VEEAKLLVSQ-GASIYIENKEEKTPLQVAKG 211

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.4 bits (210), Expect = 1e-19
 Identities = 54/201 (26%), Positives = 89/201 (44%), Gaps = 7/201 (3%)

Query: 20  SVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAI 79
           S+    ++   TAL  A   GH E+V           +  K+ +G+ PLHIAA  G   I
Sbjct: 28  SLATRTDQDSRTALHWACSAGHTEIVEF--LLQLGVPVNDKDDAGWSPLHIAASAGRDEI 85

Query: 80  VQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFA 139
           V+ LL     ++     +  TPL  AA++    +   LL   G   +        A+H A
Sbjct: 86  VKALLGKGAQVNAVNQ-NGCTPLHYAASKNRHEIAVMLLEG-GANPDAKDHYEATAMHRA 143

Query: 140 ARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKF 199
           A +G++ ++  LL        + D +G T LH+A   +  E  KLL+   A+ + + +K 
Sbjct: 144 AAKGNLKMIHILLYYKASTNIQ-DTEGNTPLHLACDEERVEEAKLLVSQGAS-IYIENKE 201

Query: 200 GNTALHVATRKKRTEIVTELL 220
             T L VA +     I+  ++
Sbjct: 202 EKTPLQVA-KGGLGLILKRMV 221

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 89.4 bits (220), Expect = 1e-20
 Identities = 55/247 (22%), Positives = 82/247 (33%), Gaps = 47/247 (19%)

Query: 21  VVNEVNELGETALFTAADKGHIEVVNELLKY-STKEGLTRKNRSGFDPLHIAAVQGH--- 76
           V   V E G+TAL  A    H   ++ LL + +  E L  +N  G   LH+AA+ G    
Sbjct: 1   VFGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEAST 60

Query: 77  ------------------------------HAIVQVLLDHDPSLSQT------------T 94
                                         H    VLL   PS  +             T
Sbjct: 61  VEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCT 120

Query: 95  GPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSK 154
             ++  P    +                  LE    +G   LH A      ++V+ L   
Sbjct: 121 PDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDA 180

Query: 155 DPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTE 214
              L +     G+T LH+AV+ Q+  V++LLL+A A         G T L  A  +    
Sbjct: 181 GADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGAD-PTARMYGGRTPLGSALLRPNPI 239

Query: 215 IVTELLS 221
           +   L +
Sbjct: 240 LARLLRA 246

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 67.0 bits (162), Expect = 4e-13
 Identities = 42/217 (19%), Positives = 63/217 (29%), Gaps = 49/217 (22%)

Query: 21  VVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIV 80
            ++  N+LG+TAL  AA  G    V +   Y+   G+    R G   LH+A     H   
Sbjct: 37  YLDLQNDLGQTALHLAAILGEASTVEK--LYAAGAGVLVAERGGHTALHLACRVRAHTCA 94

Query: 81  QVLLDHDPSLSQT------------TGPSNATPLVSAATRGHTAVVNELLSKDGGLLEIS 128
            VLL   PS  +             T  ++  P    +                  LE  
Sbjct: 95  CVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAE 154

Query: 129 RSNG----------------------------------KNALHFAARQGHVDVVKALLSK 154
             +G                                  +  LH A       V++ LL  
Sbjct: 155 NYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKA 214

Query: 155 DPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAA 191
                 R    G+T L  A+   +  + +LL    A 
Sbjct: 215 GADPTAR-MYGGRTPLGSALLRPNPILARLLRAHGAP 250

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.5 bits (88), Expect = 0.001
 Identities = 6/34 (17%), Positives = 11/34 (32%)

Query: 22  VNEVNELGETALFTAADKGHIEVVNELLKYSTKE 55
                  G T L +A  + +  +   L  +   E
Sbjct: 218 PTARMYGGRTPLGSALLRPNPILARLLRAHGAPE 251

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 85.3 bits (209), Expect = 2e-19
 Identities = 44/234 (18%), Positives = 72/234 (30%), Gaps = 10/234 (4%)

Query: 31  TALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSL 90
             L  A  +     V ELL  S    L +K++ G  PLH +     H I   LL    ++
Sbjct: 2   YPLHQACMENEFFKVQELLH-SKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENV 60

Query: 91  SQTTGPSNATPLVSAATRGHTAVVNELLS--KDGGLLEISRSNGKNALHFAARQGHVDVV 148
           +    P ++             +        +         +N        A       V
Sbjct: 61  NLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEV 120

Query: 149 KALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVAT 208
              L ++    R  DK  Q  LH A    S ++++LL     + V   DK G T L  A 
Sbjct: 121 SQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHAL 180

Query: 209 RKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGA 262
            +   +    L+       + +      A D+A          ++K        
Sbjct: 181 AEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVA-------LNEQVKKFFLNNVV 227

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.0 bits (107), Expect = 4e-06
 Identities = 10/41 (24%), Positives = 16/41 (39%)

Query: 201 NTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA 241
           N  LH A  +     V ELL    + +    +D +  L  +
Sbjct: 1   NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWS 41

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 82.4 bits (202), Expect = 5e-18
 Identities = 29/201 (14%), Positives = 65/201 (32%), Gaps = 20/201 (9%)

Query: 24  EVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVL 83
            V+E G T L       ++E+V  L+K+ +       +  G   L  A    ++      
Sbjct: 102 PVDEHGNTPLHWLTSIANLELVKHLVKHGSN--RLYGDNMGESCLVKAVKSVNNYDSGTF 159

Query: 84  LDHDPSLSQTTGPSNA---TPLVSAATRGH------------TAVVNELLSKDGGLLEIS 128
                 L       ++   T L                      ++  ++ K    ++  
Sbjct: 160 EALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSG 219

Query: 129 RSNGKNALHFAARQGHVDVVKALLSKD--PQLARRTDKKGQTALHMAVKGQSCEVVKLLL 186
            +  ++  +    +    +++ L  K     +    D  G T L++A +  +  +V  LL
Sbjct: 220 TNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALL 279

Query: 187 EADAAIVMLPDKFGNTALHVA 207
           +  A    + +K G   +   
Sbjct: 280 DYGAD-PFIANKSGLRPVDFG 299

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 80.5 bits (197), Expect = 2e-17
 Identities = 31/197 (15%), Positives = 65/197 (32%), Gaps = 17/197 (8%)

Query: 63  SGFDPLHIAAVQGHHAIVQVLLDHDPSLSQT-----TGPSNATPLVSAATRGHTAVVNEL 117
            G  PLH      +  +V+ L+ H  +         +    A   V+    G    + + 
Sbjct: 106 HGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDY 165

Query: 118 LSKDG---------GLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQT 168
           L              L  I  ++G      AA+     ++  ++ K  +  +    + ++
Sbjct: 166 LYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKES 225

Query: 169 ALHMAVKGQSCEVVKLLLEAD--AAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTN 226
             +     +   +++ L      A ++   D  G+T L++A R     IV  LL     +
Sbjct: 226 KPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDY-GAD 284

Query: 227 VNALTRDHKTALDIAEG 243
                +     +D   G
Sbjct: 285 PFIANKSGLRPVDFGAG 301

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.2 bits (134), Expect = 2e-09
 Identities = 24/145 (16%), Positives = 44/145 (30%), Gaps = 4/145 (2%)

Query: 100 TPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLA 159
             L          +   L +          S+ +   H +      +V  A  +    L 
Sbjct: 41  AFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLN 100

Query: 160 RRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKR---TEIV 216
              D+ G T LH      + E+VK L++  +   +  D  G + L  A +      +   
Sbjct: 101 IPVDEHGNTPLHWLTSIANLELVKHLVKHGSN-RLYGDNMGESCLVKAVKSVNNYDSGTF 159

Query: 217 TELLSLPDTNVNALTRDHKTALDIA 241
             LL      +      ++T L   
Sbjct: 160 EALLDYLYPCLILEDSMNRTILHHI 184

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.4 bits (132), Expect = 5e-09
 Identities = 34/236 (14%), Positives = 69/236 (29%), Gaps = 19/236 (8%)

Query: 23  NEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQV 82
           NE     E  L         E+   L   S+         S     H++       +   
Sbjct: 33  NEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSE-GGSSNQQQQHVSFDSLLQEVNDA 91

Query: 83  LLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQ 142
             +   +L+        TPL    +  +  +V  L+   G       + G++ L  A + 
Sbjct: 92  FPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKH-GSNRLYGDNMGESCLVKAVKS 150

Query: 143 ---GHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCE------------VVKLLLE 187
                    +ALL          D   +T LH  +                  ++  +++
Sbjct: 151 VNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVK 210

Query: 188 ADAAIVMLPDKFGNTALHVATRKKRTEIVTELLS--LPDTNVNALTRDHKTALDIA 241
                +        +  +    +++  I+  L    +    +NA   +  T L+IA
Sbjct: 211 KQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIA 266

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.3 bits (129), Expect = 9e-09
 Identities = 23/147 (15%), Positives = 45/147 (30%), Gaps = 1/147 (0%)

Query: 129 RSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEA 188
           +   +  L         ++  +L +             Q   H++      EV       
Sbjct: 36  KMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNT 95

Query: 189 DAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSE 248
              + +  D+ GNT LH  T     E+V  L+    +N        ++ L  A    ++ 
Sbjct: 96  QLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKH-GSNRLYGDNMGESCLVKAVKSVNNY 154

Query: 249 EASEIKDCLARCGAVRANELNQPRDEL 275
           ++   +  L         E +  R  L
Sbjct: 155 DSGTFEALLDYLYPCLILEDSMNRTIL 181

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.8 bits (120), Expect = 1e-07
 Identities = 21/96 (21%), Positives = 42/96 (43%), Gaps = 6/96 (6%)

Query: 14  VAEIRSSVVNEVNELGETALFTAADKGHIEVVNEL-LKYSTKEGLTRKNRSGFDPLHIAA 72
           + + ++  +       E+       +    ++  L LK+     L  ++ +G   L+IAA
Sbjct: 208 IVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAA 267

Query: 73  VQGHHAIVQVLLDH--DPSLSQTTGPSNATPLVSAA 106
             G+ +IV  LLD+  DP ++  +G     P+   A
Sbjct: 268 RLGNISIVDALLDYGADPFIANKSG---LRPVDFGA 300

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 80.5 bits (197), Expect = 1e-17
 Identities = 39/259 (15%), Positives = 77/259 (29%), Gaps = 54/259 (20%)

Query: 14  VAEIRSSVVNEV-NELGETALFTAADKGHIEVVNELLKYSTKEGLTR------KNRSGFD 66
              I    VN +      T L   A     E   +L+ +  KE +         +     
Sbjct: 17  TEPITRESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENT 76

Query: 67  PLHIAAV---------------------------------QGHHAIVQVLLDHDPSLSQT 93
           PL +A +                                      ++  +L+        
Sbjct: 77  PLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDI 136

Query: 94  TGPSNATPLVS--AATRGHTAV----------VNELLSKDGGLLEISRSNGKNALHFAAR 141
                         A                   ++        +  +  G+ ALH+AA+
Sbjct: 137 EELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQ 196

Query: 142 QGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGN 201
             ++ +VK L+ +      + D+ G+T + +A +    EVV  L++  A++    D   +
Sbjct: 197 VSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASV-EAVDATDH 255

Query: 202 TALHVATRKKRTEIVTELL 220
           TA  +A       IV ++ 
Sbjct: 256 TARQLAQANNHHNIV-DIF 273

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 69.0 bits (167), Expect = 1e-13
 Identities = 20/89 (22%), Positives = 37/89 (41%), Gaps = 1/89 (1%)

Query: 100 TPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLA 159
           T L  AA   +  +V  L+ + G   +    +GK  +  AA++G ++VV  L+ +   + 
Sbjct: 189 TALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVE 248

Query: 160 RRTDKKGQTALHMAVKGQSCEVVKLLLEA 188
              D    TA  +A       +V +    
Sbjct: 249 AV-DATDHTARQLAQANNHHNIVDIFDRC 276

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 57.8 bits (138), Expect = 6e-10
 Identities = 20/99 (20%), Positives = 40/99 (40%), Gaps = 3/99 (3%)

Query: 22  VNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQ 81
            +     G TAL  AA   ++ +V + L         +++  G  P+ +AA +G   +V 
Sbjct: 180 KDSEKYKGRTALHYAAQVSNMPIV-KYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVM 238

Query: 82  VLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSK 120
            L+    S+      ++ T    A    H  +V ++  +
Sbjct: 239 YLIQQGASVEAVDA-TDHTARQLAQANNHHNIV-DIFDR 275

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 56.7 bits (135), Expect = 1e-09
 Identities = 19/86 (22%), Positives = 31/86 (36%), Gaps = 10/86 (11%)

Query: 136 LHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADA----- 190
           LH  A  G   + + +  +   +     +  +T LH      S E  + L+  +A     
Sbjct: 6   LHTEA-AGSYAITEPITRES--VNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIA 62

Query: 191 --AIVMLPDKFGNTALHVATRKKRTE 214
             A V   D   NT L +A   +R  
Sbjct: 63  AGADVNAMDCDENTPLMLAVLARRRR 88

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 52.8 bits (125), Expect = 3e-08
 Identities = 13/89 (14%), Positives = 30/89 (33%), Gaps = 10/89 (11%)

Query: 100 TPL-VSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQL 158
           +P+ +     G  A+   +  +   +  I   + +  LH+ A     +  + L+  + + 
Sbjct: 2   SPIKLHTEAAGSYAITEPITRE--SVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKE 59

Query: 159 A-------RRTDKKGQTALHMAVKGQSCE 180
                      D    T L +AV  +   
Sbjct: 60  CIAAGADVNAMDCDENTPLMLAVLARRRR 88

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 50.9 bits (120), Expect = 1e-07
 Identities = 47/285 (16%), Positives = 78/285 (27%), Gaps = 63/285 (22%)

Query: 30  ETAL-FTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDP 88
           E+ +       G   +   + + S         R     LH  A        + L+ H+ 
Sbjct: 1   ESPIKLHTEAAGSYAITEPITRESVN---IIDPRHNRTVLHWIASNSSAEKSEDLIVHEA 57

Query: 89  SLSQTTG-------PSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAAR 141
                 G           TPL+ A       +V   L K G    I   + ++ALH AA 
Sbjct: 58  KECIAAGADVNAMDCDENTPLMLAVLARRRRLVAY-LMKAGADPTIYNKSERSALHQAAA 116

Query: 142 QGHVDVVKALLSKDPQLARRTDKKGQTALHM---AVKGQSCEVVKLLLEADAAIVM---- 194
                ++  +L+         +        +   A      +V    L  +    +    
Sbjct: 117 NRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDG 176

Query: 195 -----LPDKFGNTALH----------------------------------VATRKKRTEI 215
                     G TALH                                  +A ++ R E+
Sbjct: 177 AARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEV 236

Query: 216 VTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARC 260
           V  L+     +V A+     TA  +A     +     I D   RC
Sbjct: 237 VMYLIQQ-GASVEAVDATDHTARQLA----QANNHHNIVDIFDRC 276

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 38.9 bits (89), Expect = 9e-04
 Identities = 7/30 (23%), Positives = 11/30 (36%)

Query: 22  VNEVNELGETALFTAADKGHIEVVNELLKY 51
           V  V+    TA   A    H  +V+   + 
Sbjct: 247 VEAVDATDHTARQLAQANNHHNIVDIFDRC 276

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 79.0 bits (193), Expect = 6e-17
 Identities = 50/240 (20%), Positives = 82/240 (34%), Gaps = 32/240 (13%)

Query: 29  GETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDP 88
                  A   G  E V  LL+      +   N  G   LH A +  +  +V+ L+++  
Sbjct: 40  DGAVFLAACSSGDTEEVLRLLERGAD--INYANVDGLTALHQACIDDNVDMVKFLVENGA 97

Query: 89  SLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVV 148
             +     +     + AA       + E L   G  +    S G   L  A  +   +++
Sbjct: 98  --NINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELL 155

Query: 149 K--------------------------ALLSKDPQLARRTDKKGQTALHMAVKGQSCEVV 182
           +                            L+       R  K G TALH+A      EV+
Sbjct: 156 QNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVL 215

Query: 183 KLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAE 242
           K LL      V + D  G T LH A    + E    L+     ++ A+ +  +TA D+A+
Sbjct: 216 K-LLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVE-NLCDMEAVNKVGQTAFDVAD 273

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 65.1 bits (157), Expect = 2e-12
 Identities = 39/224 (17%), Positives = 67/224 (29%), Gaps = 29/224 (12%)

Query: 22  VNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGH----- 76
           +N  N  G TAL  A    ++++V  L++                    +          
Sbjct: 66  INYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYL 125

Query: 77  ------------------HAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELL 118
                                 +  ++            +         R       + L
Sbjct: 126 ISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWL 185

Query: 119 SKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQS 178
           +           +G  ALH AA +G+ +V+K L+     +    D  G T LH A     
Sbjct: 186 NSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDV-NIKDYDGWTPLHAAAHWGK 244

Query: 179 CEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSL 222
            E  ++L+E    +    +K G TA  VA      +I+  L  L
Sbjct: 245 EEACRILVENLCDM-EAVNKVGQTAFDVADE----DILGYLEEL 283

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 43.2 bits (100), Expect = 4e-05
 Identities = 13/56 (23%), Positives = 22/56 (39%), Gaps = 1/56 (1%)

Query: 129 RSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKL 184
           + +       A   G  + V  LL +   +    +  G TALH A    + ++VK 
Sbjct: 37  KFDDGAVFLAACSSGDTEEVLRLLERGADINYA-NVDGLTALHQACIDDNVDMVKF 91

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 41.2 bits (95), Expect = 2e-04
 Identities = 18/85 (21%), Positives = 28/85 (32%), Gaps = 9/85 (10%)

Query: 139 AARQGHVDVVKALLSKDPQLARRTDKK--------GQTALHMAVKGQSCEVVKLLLEADA 190
            A+Q   + +K  +  +  L     K+               A      E V  LLE  A
Sbjct: 5   DAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGA 64

Query: 191 AIVMLPDKFGNTALHVATRKKRTEI 215
             +   +  G TALH A      ++
Sbjct: 65  D-INYANVDGLTALHQACIDDNVDM 88

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.2 bits (188), Expect = 7e-17
 Identities = 43/213 (20%), Positives = 82/213 (38%), Gaps = 7/213 (3%)

Query: 29  GETALFTAADKGHIEVVNELLKYSTKEG--LTRKNRSGFDPLHIAA----VQGHHAIVQV 82
           G++ L  A       +  E+++    +   L  +N     PLH+A      +   A++  
Sbjct: 2   GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGA 61

Query: 83  LLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQ 142
             D +    +   P +                +        +L+ +  NG   LH A+  
Sbjct: 62  GCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIH 121

Query: 143 GHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNT 202
           G++ +V+ L+S    +  +    G+TALH+AV  Q+ ++V LLL+  A +       G +
Sbjct: 122 GYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADV-NRVTYQGYS 180

Query: 203 ALHVATRKKRTEIVTELLSLPDTNVNALTRDHK 235
              +   +  T I  +L  L   N+  L     
Sbjct: 181 PYQLTWGRPSTRIQQQLGQLTLENLQMLPESED 213

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.0 bits (125), Expect = 1e-08
 Identities = 39/218 (17%), Positives = 71/218 (32%), Gaps = 12/218 (5%)

Query: 64  GFDPLHIAAVQGHHAIVQVLLDH---DPSLSQTTGPSNATPLVSAA----TRGHTAVVNE 116
           G   LH+A +    A+   ++     D +          TPL  A          A++  
Sbjct: 2   GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGA 61

Query: 117 LLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKG 176
               +      +                V            + + T+  G T LH+A   
Sbjct: 62  GCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIH 121

Query: 177 QSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKT 236
               +V+LL+   A +       G TALH+A   +  ++V+ LL     +VN +T    +
Sbjct: 122 GYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLK-CGADVNRVTYQGYS 180

Query: 237 ALDIAEGLPSSEEASEIKDCLARCGAVRANELNQPRDE 274
              +         ++ I+  L +        L +  DE
Sbjct: 181 PYQLT----WGRPSTRIQQQLGQLTLENLQMLPESEDE 214

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.7 bits (114), Expect = 4e-07
 Identities = 11/52 (21%), Positives = 19/52 (36%), Gaps = 3/52 (5%)

Query: 131 NGKNALHFAARQGHVDVVKALLSK---DPQLARRTDKKGQTALHMAVKGQSC 179
           +G + LH A       +   ++ +   D       +   QT LH+AV     
Sbjct: 1   DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQP 52

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.6 bits (189), Expect = 8e-17
 Identities = 41/226 (18%), Positives = 75/226 (33%), Gaps = 40/226 (17%)

Query: 29  GETALFTAADKGHIEVVNELLKYSTKEG--LTRKNRSGFDPLHIAAVQGHHAIVQ----- 81
           G+T L  A  +G++  V+ L+    + G  L   N     PLH+A +    ++V+     
Sbjct: 3   GDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTA 62

Query: 82  -------------------------------VLLDHDPSLSQTTGPSNATPLVSAATRGH 110
                                                    +       T L  A     
Sbjct: 63  GASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTEC 122

Query: 111 TAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTAL 170
              V  LL +   +  +   +G++ L  A     + +V+ LL +           G +AL
Sbjct: 123 QETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQ-LLLQHGANVNAQMYSGSSAL 181

Query: 171 HMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIV 216
           H A       +V+ L+ + A    L +   +T L VA  ++  +I+
Sbjct: 182 HSASGRGLLPLVRTLVRSGADS-SLKNCHNDTPLMVARSRRVIDIL 226

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.8 bits (148), Expect = 2e-11
 Identities = 28/122 (22%), Positives = 55/122 (45%), Gaps = 6/122 (4%)

Query: 64  GFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGG 123
           G   LH+A        VQ+LL+    +      S  +PL+ A    ++  + +LL + G 
Sbjct: 110 GLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAV-ENNSLSMVQLLLQHGA 168

Query: 124 LLEISRSNGKNALHFAARQGHVDVVKALLSK--DPQLARRTDKKGQTALHMAVKGQSCEV 181
            +     +G +ALH A+ +G + +V+ L+    D  L    +    T L +A   +  ++
Sbjct: 169 NVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSL---KNCHNDTPLMVARSRRVIDI 225

Query: 182 VK 183
           ++
Sbjct: 226 LR 227

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.2 bits (131), Expect = 2e-09
 Identities = 24/109 (22%), Positives = 44/109 (40%), Gaps = 2/109 (1%)

Query: 41  HIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNAT 100
             +   +LL     +      +SG  PL  A      ++VQ+LL H  +       S ++
Sbjct: 121 ECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGAN-VNAQMYSGSS 179

Query: 101 PLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVK 149
            L SA+ RG   +V  L+   G    +   +    L  A  +  +D+++
Sbjct: 180 ALHSASGRGLLPLVRTLVRS-GADSSLKNCHNDTPLMVARSRRVIDILR 227

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.3 bits (126), Expect = 1e-08
 Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 3/52 (5%)

Query: 131 NGKNALHFAARQGHVDVVKALLSKDPQLAR---RTDKKGQTALHMAVKGQSC 179
           +G   LH A  QG++  V  L++   Q  R     +   QT LH+AV     
Sbjct: 2   DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLP 53

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (84), Expect = 0.003
 Identities = 5/24 (20%), Positives = 11/24 (45%)

Query: 22  VNEVNELGETALFTAADKGHIEVV 45
            +  N   +T L  A  +  I+++
Sbjct: 203 SSLKNCHNDTPLMVARSRRVIDIL 226

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 69.0 bits (167), Expect = 4e-14
 Identities = 42/200 (21%), Positives = 70/200 (35%), Gaps = 7/200 (3%)

Query: 22  VNE-VNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIV 80
           +N  +++ GET+L  AA     +    LL                    +AA       +
Sbjct: 15  LNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQI 74

Query: 81  QVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAA 140
            +        ++    +        A R     + E L      +  + ++GK ALH+AA
Sbjct: 75  LLRNRATNLNARMHDGTTPLI---LAARLAIEGMVEDLITADADINAADNSGKTALHWAA 131

Query: 141 RQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFG 200
              + + V  L           D K +T L +A +  S E  K LL+  A    + D   
Sbjct: 132 AVNNTEAVNIL-LMHHANRDAQDDKDETPLFLAAREGSYEASKALLDNFANR-EITDHMD 189

Query: 201 NTALHVATRKKRTEIVTELL 220
                VA+ +   +IV  LL
Sbjct: 190 RLPRDVASERLHHDIV-RLL 208

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 54.0 bits (128), Expect = 6e-09
 Identities = 49/202 (24%), Positives = 76/202 (37%), Gaps = 11/202 (5%)

Query: 43  EVVNELLKYSTKEGL---TRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNA 99
           +V+++LL      G       +++G   LH+AA        +  L    + + +   +  
Sbjct: 3   QVISDLLAQ----GAELNATMDKTGETSLHLAARFARADAAK-RLLDAGADANSQDNTGR 57

Query: 100 TPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLA 159
           TPL +A       V   LL      L     +G   L  AAR     +V+ L++ D  + 
Sbjct: 58  TPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADIN 117

Query: 160 RRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTEL 219
              D  G+TALH A    + E V +LL   A      D    T L +A R+   E    L
Sbjct: 118 AA-DNSGKTALHWAAAVNNTEAVNILLMHHANRDA-QDDKDETPLFLAAREGSYEASKAL 175

Query: 220 LSLPDTNVNALTRDHKTALDIA 241
           L     N        +   D+A
Sbjct: 176 LDN-FANREITDHMDRLPRDVA 196

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 49.4 bits (116), Expect = 2e-07
 Identities = 14/42 (33%), Positives = 21/42 (50%)

Query: 178 SCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTEL 219
           + +V+  LL   A +    DK G T+LH+A R  R +    L
Sbjct: 1   TAQVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRL 42

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.3 bits (126), Expect = 4e-09
 Identities = 26/159 (16%), Positives = 52/159 (32%), Gaps = 7/159 (4%)

Query: 27  ELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDH 86
           +LG   L  AA  G  + V  L+             S               ++      
Sbjct: 1   DLG-KKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVS 59

Query: 87  DPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVD 146
             + ++                   A + E+L K G  +         ALH+A    H +
Sbjct: 60  RDARTKVDRTPLHMA-----ASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQE 114

Query: 147 VVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLL 185
           VV+ L+     +  +  K  +TA  +++   + ++ ++L
Sbjct: 115 VVELLIKYGADVHTQ-SKFCKTAFDISIDNGNEDLAEIL 152

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.9 bits (117), Expect = 6e-08
 Identities = 32/154 (20%), Positives = 51/154 (33%), Gaps = 6/154 (3%)

Query: 67  PLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLE 126
            L  AA  G    V++L+ +    +     ++   L +      T  V            
Sbjct: 5   KLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVS----R 60

Query: 127 ISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLL 186
            +R+         A       +  +L K        D    TALH A +    EVV+LL 
Sbjct: 61  DARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELL- 119

Query: 187 EADAAIVMLPDKFGNTALHVATRKKRTEIVTELL 220
               A V    KF  TA  ++      ++  E+L
Sbjct: 120 IKYGADVHTQSKFCKTAFDISIDNGNEDLA-EIL 152

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.5 bits (98), Expect = 2e-05
 Identities = 37/142 (26%), Positives = 56/142 (39%), Gaps = 5/142 (3%)

Query: 100 TPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLA 159
             L+ AA  G    V  L++        +      +    A Q        +L +     
Sbjct: 4   KKLLEAARAGQDDEVRILMANGA---PFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR 60

Query: 160 RRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTEL 219
               K  +T LHMA       +V++LL+  A +    D    TALH AT     E+V EL
Sbjct: 61  DARTKVDRTPLHMAASEGHANIVEVLLKHGADVNA-KDMLKMTALHWATEHNHQEVV-EL 118

Query: 220 LSLPDTNVNALTRDHKTALDIA 241
           L     +V+  ++  KTA DI+
Sbjct: 119 LIKYGADVHTQSKFCKTAFDIS 140

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.7 bits (88), Expect = 4e-04
 Identities = 7/29 (24%), Positives = 17/29 (58%), Gaps = 1/29 (3%)

Query: 22  VNEVNELGETALFTAADKGHIEVVNELLK 50
           V+  ++  +TA   + D G+ ++  E+L+
Sbjct: 126 VHTQSKFCKTAFDISIDNGNEDLA-EILQ 153

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.1 bits (120), Expect = 1e-08
 Identities = 31/127 (24%), Positives = 48/127 (37%), Gaps = 4/127 (3%)

Query: 27  ELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDH 86
           E     L TAA +G +E V  LL+     G      + +    I  +    A V  LL  
Sbjct: 1   EPSADWLATAAARGRVEEVRALLEA----GANPNAPNSYGRRPIQVMMMGSARVAELLLL 56

Query: 87  DPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVD 146
             +      P+  T  V  A R        +L + G  L++  + G+  +  A   GH D
Sbjct: 57  HGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRD 116

Query: 147 VVKALLS 153
           V + L +
Sbjct: 117 VARYLRA 123

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (106), Expect = 1e-06
 Identities = 19/123 (15%), Positives = 35/123 (28%), Gaps = 3/123 (2%)

Query: 66  DPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLL 125
           D L  AA +G    V+ LL+   + +           V        A +  L   +    
Sbjct: 5   DWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSARVAELLLLHGAEPNCA 64

Query: 126 EISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLL 185
           + +                  VV     +        D  G+  + +A +    +V + L
Sbjct: 65  DPATLTRPVHDAAREGFLDTLVVL---HRAGARLDVRDAWGRLPVDLAEELGHRDVARYL 121

Query: 186 LEA 188
             A
Sbjct: 122 RAA 124

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.6 bits (103), Expect = 2e-06
 Identities = 17/121 (14%), Positives = 32/121 (26%), Gaps = 31/121 (25%)

Query: 132 GKNALHFAARQGHVDVVKALLS-------------------------------KDPQLAR 160
             + L  AA +G V+ V+ALL                                       
Sbjct: 3   SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSARVAELLLLHGAEPN 62

Query: 161 RTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELL 220
             D    T        +      ++L    A + + D +G   + +A      ++   L 
Sbjct: 63  CADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLR 122

Query: 221 S 221
           +
Sbjct: 123 A 123

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.8 bits (117), Expect = 6e-08
 Identities = 33/159 (20%), Positives = 59/159 (37%), Gaps = 6/159 (3%)

Query: 29  GETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDP 88
               L  AA +G ++ V  LL           NR G   L +         +++L     
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLH-RELVHPDALNRFGKTALQVMMFGSTAIALELLKQGAS 60

Query: 89  SLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVV 148
              Q T  ++     +      T  V     + G  + +    G   +H A ++GH  VV
Sbjct: 61  PNVQDTSGTSPVHDAARTGFLDTLKVLV---EHGADVNVPDGTGALPIHLAVQEGHTAVV 117

Query: 149 KALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLE 187
             L ++     R  D +G T L +A++  + ++V +L  
Sbjct: 118 SFLAAESDLHRR--DARGLTPLELALQRGAQDLVDILQG 154

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.0 bits (115), Expect = 1e-07
 Identities = 30/160 (18%), Positives = 50/160 (31%), Gaps = 6/160 (3%)

Query: 62  RSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKD 121
           R+G D L  AA +G    V+ LL  +            T L           +  L    
Sbjct: 1   RAG-DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGA 59

Query: 122 GGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEV 181
                  +     +    A +        +L +        D  G   +H+AV+     V
Sbjct: 60  S---PNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAV 116

Query: 182 VKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLS 221
           V  L     + +   D  G T L +A ++   ++V  L  
Sbjct: 117 VSFLAAE--SDLHRRDARGLTPLELALQRGAQDLVDILQG 154

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.9 bits (99), Expect = 2e-05
 Identities = 10/30 (33%), Positives = 16/30 (53%)

Query: 57  LTRKNRSGFDPLHIAAVQGHHAIVQVLLDH 86
           L R++  G  PL +A  +G   +V +L  H
Sbjct: 126 LHRRDARGLTPLELALQRGAQDLVDILQGH 155

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.7 bits (96), Expect = 4e-05
 Identities = 29/141 (20%), Positives = 56/141 (39%), Gaps = 33/141 (23%)

Query: 132 GKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADA- 190
             + L  AA +G V  V+ LL ++       ++ G+TAL + + G +   ++LL +  + 
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASP 61

Query: 191 ------------------------------AIVMLPDKFGNTALHVATRKKRTEIVTELL 220
                                         A V +PD  G   +H+A ++  T +V+ L 
Sbjct: 62  NVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA 121

Query: 221 SLPDTNVNALTRDHKTALDIA 241
           +  D  ++       T L++A
Sbjct: 122 AESD--LHRRDARGLTPLELA 140

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.3 bits (82), Expect = 0.003
 Identities = 7/28 (25%), Positives = 14/28 (50%)

Query: 22  VNEVNELGETALFTAADKGHIEVVNELL 49
           ++  +  G T L  A  +G  ++V+ L 
Sbjct: 126 LHRRDARGLTPLELALQRGAQDLVDILQ 153

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.6 bits (117), Expect = 7e-08
 Identities = 19/128 (14%), Positives = 38/128 (29%), Gaps = 40/128 (31%)

Query: 134 NALHFAARQGHVDVVKALLSK-----DPQLARRTDKKGQTALHMAVK---GQSCEVVKLL 185
           ++L  A +   +  +    +      +        +  +TALH+AV+     S  +V  L
Sbjct: 8   HSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFL 67

Query: 186 LEADA--------------------------------AIVMLPDKFGNTALHVATRKKRT 213
           ++                                   A + + ++ G T L +A R K  
Sbjct: 68  VQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHE 127

Query: 214 EIVTELLS 221
                L  
Sbjct: 128 HCEELLTQ 135

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.3 bits (111), Expect = 4e-07
 Identities = 19/145 (13%), Positives = 41/145 (28%), Gaps = 10/145 (6%)

Query: 61  NRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNA-----TPL---VSAATRGHTA 112
             +    L  A        +         L++    +N      T L   V +  R    
Sbjct: 3   TAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLH 62

Query: 113 VVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHM 172
           +V+ L+          ++   +                LL +        ++ G+T L +
Sbjct: 63  IVDFLVQN--SGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDI 120

Query: 173 AVKGQSCEVVKLLLEADAAIVMLPD 197
           A + +     +LL +A +       
Sbjct: 121 AKRLKHEHCEELLTQALSGRFNSHV 145

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.5 bits (116), Expect = 8e-08
 Identities = 32/158 (20%), Positives = 57/158 (36%), Gaps = 5/158 (3%)

Query: 31  TALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSL 90
             L +AA +G +E +  LL+ +    +  +N  G   L +  +       ++      + 
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVN--VNAQNGFGRTALQVMKLGNPEIARRL--LLRGAN 58

Query: 91  SQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKA 150
                 +    +  AA  G    +  LL     +            H AA++GH+ VV+ 
Sbjct: 59  PDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPL-HLAAKEGHLRVVEF 117

Query: 151 LLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEA 188
           L+          + KG TA  +A      EVV L+   
Sbjct: 118 LVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQAN 155

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.7 bits (114), Expect = 2e-07
 Identities = 32/156 (20%), Positives = 61/156 (39%), Gaps = 4/156 (2%)

Query: 66  DPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLL 125
           + L  AA +G    +  LL ++ +++   G       V        A    L   +    
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRGANP--- 59

Query: 126 EISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLL 185
           ++    G   +H AAR G +D ++ LL     +    ++        A +G    V  L+
Sbjct: 60  DLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLV 119

Query: 186 LEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLS 221
            +  A+ V   +  G+TA  +A    R E+V+ + +
Sbjct: 120 -KHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQA 154

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (85), Expect = 0.001
 Identities = 10/30 (33%), Positives = 13/30 (43%)

Query: 22  VNEVNELGETALFTAADKGHIEVVNELLKY 51
           V   N  G+TA   A   G  EVV+ +   
Sbjct: 126 VGHRNHKGDTACDLARLYGRNEVVSLMQAN 155

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.9 bits (115), Expect = 9e-08
 Identities = 18/130 (13%), Positives = 40/130 (30%), Gaps = 5/130 (3%)

Query: 31  TALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSL 90
             L  ++ +G  ++V  ++    +                 AV   H  +   L      
Sbjct: 3   ALLLDSSLEGEFDLVQRIIY---EVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVN 59

Query: 91  SQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNA--LHFAARQGHVDVV 148
                    TPL  AA+  +  V   L+     +  ++ S+ + A        +G+    
Sbjct: 60  VNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCS 119

Query: 149 KALLSKDPQL 158
           + L     ++
Sbjct: 120 QFLYGVQEKM 129

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.6 bits (109), Expect = 6e-07
 Identities = 21/128 (16%), Positives = 40/128 (31%), Gaps = 4/128 (3%)

Query: 67  PLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLE 126
            L  ++++G   +VQ ++      S            +        V   +         
Sbjct: 4   LLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNV--N 61

Query: 127 ISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTA--LHMAVKGQSCEVVKL 184
            + S+G   LH AA   +V V K L+     +   T    QTA      ++    +  + 
Sbjct: 62  AADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQF 121

Query: 185 LLEADAAI 192
           L      +
Sbjct: 122 LYGVQEKM 129

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.3 bits (103), Expect = 4e-06
 Identities = 20/121 (16%), Positives = 37/121 (30%), Gaps = 34/121 (28%)

Query: 136 LHFAARQGHVDVVKALLSK--------------------------------DPQLARRTD 163
           L  ++ +G  D+V+ ++ +                                        D
Sbjct: 5   LLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAAD 64

Query: 164 KKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTA--LHVATRKKRTEIVTELLS 221
             G T LH A    + +V K L+E+ AA+  +      TA        +  T+    L  
Sbjct: 65  SDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYG 124

Query: 222 L 222
           +
Sbjct: 125 V 125

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 118

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.4 bits (100), Expect = 5e-06
 Identities = 24/121 (19%), Positives = 38/121 (31%), Gaps = 7/121 (5%)

Query: 67  PLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLE 126
               A   G    V+  +     +++T          +A       +        G  + 
Sbjct: 5   EFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFL--LLKGADIN 62

Query: 127 ISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLL 186
               +    L  A  +GHV  VK LLSK      +    G TAL         + +K LL
Sbjct: 63  APDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVK-GPDGLTALEAT----DNQAIKALL 117

Query: 187 E 187
           +
Sbjct: 118 Q 118

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 118

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.0 bits (94), Expect = 4e-05
 Identities = 19/125 (15%), Positives = 33/125 (26%), Gaps = 8/125 (6%)

Query: 28  LGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHD 87
           + +     A   G ++ V + +        T +             Q       +L   D
Sbjct: 1   MCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGAD 60

Query: 88  PSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDV 147
            +       +     V            +LL   G    +   +G  AL     Q     
Sbjct: 61  INAPDKHHITPLLSAVYEGHVSC----VKLLLSKGADKTVKGPDGLTALEATDNQ----A 112

Query: 148 VKALL 152
           +KALL
Sbjct: 113 IKALL 117

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 118

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.0 bits (86), Expect = 4e-04
 Identities = 20/118 (16%), Positives = 34/118 (28%), Gaps = 35/118 (29%)

Query: 134 NALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKL--------- 184
               +A + G +D VK  ++K   + R  +   +   + A  GQ   +  L         
Sbjct: 4   KEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINA 63

Query: 185 ----------------------LLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELL 220
                                 LL +  A   +    G TAL         + +  LL
Sbjct: 64  PDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALEAT----DNQAIKALL 117

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	491
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	100.0
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.97
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.97
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.97
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.97
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.97
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.96
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.96
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.96
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.95
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.95
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.95
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.94
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.94
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.93
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.93
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.93
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.93
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.92
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.92
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.91
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.9
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.9
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.88
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.87
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.86
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.85
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.84
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.83
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.81
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.8

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.3e-36  Score=284.79  Aligned_cols=237  Identities=22%  Similarity=0.214  Sum_probs=187.3

Q ss_pred             hccCCCCCCHHHHHHHcCCHHHHHHHHhccCccc-cccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCCH
Q 011183           23 NEVNELGETALFTAADKGHIEVVNELLKYSTKEG-LTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATP  101 (491)
Q Consensus        23 ~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~-l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~tp  101 (491)
                      +.+|++|+||||+||+.|+.+++++|++.+++.. ++.+|..|.||||+|+..|+.+++++|+++|+++ +..|.+|.||
T Consensus         3 ~~i~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i-~~~d~~g~tp   81 (255)
T d1oy3d_           3 GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGV-LVAERGGHTA   81 (255)
T ss_dssp             CCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-SCCCTTSCCH
T ss_pred             ccCCcCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhhcccccccccccccccc-cccccccchh
Confidence            5689999999999999999999999999886543 6788999999999999999999999999999997 6789999999


Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCcccccC---------CCCCc---HHHHHHHcCCHHHHHHHHhCCcccccccCCCCCCH
Q 011183          102 LVSAATRGHTAVVNELLSKDGGLLEISR---------SNGKN---ALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTA  169 (491)
Q Consensus       102 L~~A~~~g~~~~v~~LL~~~~~~~~~~d---------~~g~t---pLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~  169 (491)
                      ||+|+..++.++++.|++..........         ..+.+   ++..............+........+.+|..|+||
T Consensus        82 L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~Tp  161 (255)
T d1oy3d_          82 LHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTP  161 (255)
T ss_dssp             HHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCH
T ss_pred             hhhhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCccc
Confidence            9999999999999999986443211100         01111   11111111111112222222222236788999999


Q ss_pred             HHHHHhCCCHHHHHHHHhcCcccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCchh
Q 011183          170 LHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEE  249 (491)
Q Consensus       170 Lh~Aa~~~~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~d~~G~t~L~~A~~~~~~~~  249 (491)
                      ||+|++.++.+++++|++.+++....++..|.||||+|++.++.+++++|++ .|++++.+|..|+||||+|+..++.  
T Consensus       162 Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~-~gadin~~d~~g~t~L~~A~~~~~~--  238 (255)
T d1oy3d_         162 LHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLK-AGADPTARMYGGRTPLGSALLRPNP--  238 (255)
T ss_dssp             HHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHTSSCH--
T ss_pred             ccccccccccccccchhcccccccccccccccccccccccccHHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHHCCCH--
Confidence            9999999999999999999999777778899999999999999999999999 7999999999999999999998764  


Q ss_pred             hHHHHHHHHHcCcccc
Q 011183          250 ASEIKDCLARCGAVRA  265 (491)
Q Consensus       250 ~~~i~~~L~~~ga~~~  265 (491)
                        +++++|+++||..+
T Consensus       239 --~i~~~Ll~~Ga~~~  252 (255)
T d1oy3d_         239 --ILARLLRAHGAPEP  252 (255)
T ss_dssp             --HHHHHHHHTTCCCC
T ss_pred             --HHHHHHHHcCCCCC
Confidence              48899999999643

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.1e-35  Score=268.73  Aligned_cols=219  Identities=26%  Similarity=0.360  Sum_probs=197.8

Q ss_pred             CCCHHHHHHHcCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHc
Q 011183           29 GETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATR  108 (491)
Q Consensus        29 g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~~  108 (491)
                      ++++||.+|..|+.+.|+.+++.. +..++.+|..|+||||+|+..|+.+++++|++.+... ...+..+.++++.++..
T Consensus         3 ~~~~~~~~a~~G~~~~v~~~l~~~-~~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~   80 (223)
T d1uoha_           3 SNLMVCNLAYSGKLEELKESILAD-KSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV-NDKDDAGWSPLHIAASA   80 (223)
T ss_dssp             SSSHHHHHHHTTCHHHHHHHHHHC-GGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCS-CCCCTTCCCHHHHHHHH
T ss_pred             CHHHHHHHHHhCCHHHHHHHHHhC-CCcCcCcCCCCCCHHHHHHHhhhhccccccccccccc-ccccccccccccccccc
Confidence            578999999999999998888754 3447889999999999999999999999999998887 45667889999999999


Q ss_pred             CCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCCHHHHHHhCCCHHHHHHHHhc
Q 011183          109 GHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEA  188 (491)
Q Consensus       109 g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~~~~iv~~Ll~~  188 (491)
                      |+.+++++|++++ .+++..|.+|.||||+|+..|+.+++++|++++.++ +..|..|.||||+|+..++.+++++|.+.
T Consensus        81 ~~~~i~~~Ll~~~-~d~~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~-~~~~~~~~t~L~~a~~~~~~~~~~~L~~~  158 (223)
T d1uoha_          81 GRDEIVKALLGKG-AQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANP-DAKDHYEATAMHRAAAKGNLKMIHILLYY  158 (223)
T ss_dssp             TCHHHHHHHHHTT-CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             cccchhHHHhccC-ceeEeeCCCCCchhhHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCccchhhhhcCCcchhhhhccc
Confidence            9999999999984 678889999999999999999999999999999887 77899999999999999999999999999


Q ss_pred             CcccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCchhhHHHHHHHH
Q 011183          189 DAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLA  258 (491)
Q Consensus       189 ~~~~~~~~d~~G~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~d~~G~t~L~~A~~~~~~~~~~~i~~~L~  258 (491)
                      +.+ ++.+|.+|+||||+|+..|+.+++++|++ .|+|++.+|.+|+||||+|.. +    ..++++.|+
T Consensus       159 ~~~-i~~~d~~g~TpL~~Aa~~g~~~~v~~LL~-~Gad~~~~d~~g~tpl~~A~~-~----~~~i~~~Ll  221 (223)
T d1uoha_         159 KAS-TNIQDTEGNTPLHLACDEERVEEAKLLVS-QGASIYIENKEEKTPLQVAKG-G----LGLILKRMV  221 (223)
T ss_dssp             TCC-SCCCCTTCCCHHHHHHHTTCHHHHHHHHH-TTCCSCCCCTTSCCHHHHCCT-T----HHHHHHHHH
T ss_pred             cce-eeeccCCCCceeccccccCcHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHC-C----CHHHHhccc
Confidence            998 88999999999999999999999999998 799999999999999999843 2    233555554

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=9.2e-35  Score=269.11  Aligned_cols=225  Identities=24%  Similarity=0.242  Sum_probs=202.2

Q ss_pred             CCHHHHHHHcCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCc--ccCCCCCCCHHHHHHH
Q 011183           30 ETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLS--QTTGPSNATPLVSAAT  107 (491)
Q Consensus        30 ~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~--~~~~~~g~tpL~~A~~  107 (491)
                      +||||+||..|+.++|+.|++... ..++.+|.+|.||||+|+..|+.+++++|+++|+++.  ...+..|.+|+|+++.
T Consensus         1 n~pLh~A~~~g~~~~v~~Ll~~~~-~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~   79 (229)
T d1ixva_           1 NYPLHQACMENEFFKVQELLHSKP-SLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS   79 (229)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHCG-GGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred             CHhHHHHHHcCCHHHHHHHHHcCC-CcccccCCCCCCHHHHHHHcCCccccchhhhhhcccccccccccccccccccccc
Confidence            589999999999999999998643 3578899999999999999999999999999988763  4567789999999999


Q ss_pred             cCCHHHHHHHHhcCCC-cccccCCCCCcHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCCHHHHHHhCCCHHHHHHHH
Q 011183          108 RGHTAVVNELLSKDGG-LLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLL  186 (491)
Q Consensus       108 ~g~~~~v~~LL~~~~~-~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~~~~iv~~Ll  186 (491)
                      .+..++++.++..+.. .....+..+.+|++.++..++.++++.|++.+... ...|..|+||||.|+..|+.+++++|+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~~Ll  158 (229)
T d1ixva_          80 VGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASV-RIKDKFNQIPLHRAASVGSLKLIELLC  158 (229)
T ss_dssp             HTCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccchhhhhhhhhhhcccc-cccCCCCCCccchhhhccccccccccc
Confidence            9999999998877533 34456778999999999999999999999998886 678999999999999999999999999


Q ss_pred             hcCcccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCchhhHHHHHHHHHcCcc
Q 011183          187 EADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAV  263 (491)
Q Consensus       187 ~~~~~~~~~~d~~G~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~d~~G~t~L~~A~~~~~~~~~~~i~~~L~~~ga~  263 (491)
                      +.+...++.+|.+|+||||+|+..|+.+++++|++..|+|++.+|.+|+||||+|..       .+++++|++.|++
T Consensus       159 ~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad~~~~d~~g~t~l~~A~~-------~~~~~~Ll~~g~d  228 (229)
T d1ixva_         159 GLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALN-------EQVKKFFLNNVVD  228 (229)
T ss_dssp             TTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCCCTTSCCTGGGCSC-------HHHHHHHHHHCCC
T ss_pred             ccccccccccccccCCchhhhcccccHHHHHHHHHhcCCCCCCcCCCCCCHHHHHhh-------HHHHHHHHHcCCC
Confidence            999777899999999999999999999999999975799999999999999999874       2588999998874

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.7e-34  Score=262.86  Aligned_cols=208  Identities=28%  Similarity=0.391  Sum_probs=193.3

Q ss_pred             hhhhHHHHHhhchhhhhccCCCCCCHHHHHHHcCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhc
Q 011183            7 GAEFDTEVAEIRSSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDH   86 (491)
Q Consensus         7 ~~~~~~~~~~~~~~~l~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~   86 (491)
                      ..+...++++..+.+++.+|.+|+||||+|+..|+.+++++|++.+..  ....+..+.++++.|+..|+.+++++|+++
T Consensus        15 ~~~~v~~~l~~~~~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~   92 (223)
T d1uoha_          15 KLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP--VNDKDDAGWSPLHIAASAGRDEIVKALLGK   92 (223)
T ss_dssp             CHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCC--SCCCCTTCCCHHHHHHHHTCHHHHHHHHHT
T ss_pred             CHHHHHHHHHhCCCcCcCcCCCCCCHHHHHHHhhhhcccccccccccc--cccccccccccccccccccccchhHHHhcc
Confidence            346778888999999999999999999999999999999999998765  456677889999999999999999999999


Q ss_pred             CCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhCCcccccccCCCC
Q 011183           87 DPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKG  166 (491)
Q Consensus        87 ~~~l~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g  166 (491)
                      ++++ +..|..|.||||+|+..|+.+++++|++. +.+++..+.+|.||||+|+..++.++++.|++.+.++ +..|..|
T Consensus        93 ~~d~-~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~-g~d~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~~~~i-~~~d~~g  169 (223)
T d1uoha_          93 GAQV-NAVNQNGCTPLHYAASKNRHEIAVMLLEG-GANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKAST-NIQDTEG  169 (223)
T ss_dssp             TCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCS-CCCCTTC
T ss_pred             Ccee-EeeCCCCCchhhHHHHcCCHHHHHHHHHC-CCCCCCcCCCCCccchhhhhcCCcchhhhhcccccee-eeccCCC
Confidence            9987 68899999999999999999999999987 5678889999999999999999999999999999986 7889999


Q ss_pred             CCHHHHHHhCCCHHHHHHHHhcCcccccCCCCCCChHHHHHHHcCcHHHHHHHhc
Q 011183          167 QTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLS  221 (491)
Q Consensus       167 ~t~Lh~Aa~~~~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~~~~~iv~~Ll~  221 (491)
                      +||||.|+..|+.+++++|++.|++ ++.+|.+|+||||+| ..|+.+++++|++
T Consensus       170 ~TpL~~Aa~~g~~~~v~~LL~~Gad-~~~~d~~g~tpl~~A-~~~~~~i~~~Ll~  222 (223)
T d1uoha_         170 NTPLHLACDEERVEEAKLLVSQGAS-IYIENKEEKTPLQVA-KGGLGLILKRMVE  222 (223)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHC-CTTHHHHHHHHHC
T ss_pred             CceeccccccCcHHHHHHHHHCCCC-CCCCCCCCCCHHHHH-HCCCHHHHhcccC
Confidence            9999999999999999999999998 889999999999998 5799999999987

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.3e-32  Score=271.38  Aligned_cols=277  Identities=27%  Similarity=0.317  Sum_probs=203.9

Q ss_pred             hhhhHHHHHhhchhhhhccCCCCCCHHHHHHHcCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhc
Q 011183            7 GAEFDTEVAEIRSSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDH   86 (491)
Q Consensus         7 ~~~~~~~~~~~~~~~l~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~   86 (491)
                      ..+.+..+++ .++++|..|..|+||||+|+..|+.++|++|+++|++  ++..|.+|.||||+|+..|+.+++++|+..
T Consensus        12 ~~~~v~~Ll~-~g~~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad--i~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~   88 (408)
T d1n11a_          12 HLPIVKNLLQ-RGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAK--VNAKAKDDQTPLHCAARIGHTNMVKLLLEN   88 (408)
T ss_dssp             CHHHHHHHHH-TTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCC--SSCCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred             CHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCcCC--CCCCCCCCCCHHHHHHHcCCHHHHHHHHHh
Confidence            3455666665 5788999999999999999999999999999999876  677889999999999999999888888765


Q ss_pred             CCCCc--------------------------------ccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCc
Q 011183           87 DPSLS--------------------------------QTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKN  134 (491)
Q Consensus        87 ~~~l~--------------------------------~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~t  134 (491)
                      .++..                                ...+..+.++++.|+..++.++++.|+++ +..++..+.+|.+
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~-~~~~~~~~~~~~~  167 (408)
T d1n11a_          89 NANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLER-DAHPNAAGKNGLT  167 (408)
T ss_dssp             TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCSSCCC
T ss_pred             hhccccccccccchhhhhhhhcccccccccccccccccccccccchHHHHHHHcCCHHHHHHHHHc-CCCCCcCCCcCch
Confidence            43221                                12234455555555555555555555554 3344455555555


Q ss_pred             HHHHHHHcCCHHHHHHHHhCCcccc-------------------------------------------------------
Q 011183          135 ALHFAARQGHVDVVKALLSKDPQLA-------------------------------------------------------  159 (491)
Q Consensus       135 pLh~A~~~g~~~iv~~Ll~~~~~~~-------------------------------------------------------  159 (491)
                      |||.|+..|+.+++++|+++++++.                                                       
T Consensus       168 ~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~  247 (408)
T d1n11a_         168 PLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMV  247 (408)
T ss_dssp             HHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcchhhhccchhhhhhhhhhccccccccCCCCCCHHHHHHHhCcHhHh
Confidence            6666665555555555555443321                                                       


Q ss_pred             ----------cccCCCCCCHHHHHHhCCCHHHHHHHHhcCcccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCccc
Q 011183          160 ----------RRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNA  229 (491)
Q Consensus       160 ----------~~~d~~g~t~Lh~Aa~~~~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~  229 (491)
                                +..|..|.||||.|++.++.+++++|++.|++ ++..+..+.||||.|+..++.++++++++ .|++++.
T Consensus       248 ~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~-~~~~~~~~~t~L~~~~~~~~~~~~~~ll~-~g~~in~  325 (408)
T d1n11a_         248 ALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVM-VDATTRMGYTPLHVASHYGNIKLVKFLLQ-HQADVNA  325 (408)
T ss_dssp             HHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCC-TTCCCSSCCCHHHHHHHSSCSHHHHHHHH-TTCCTTC
T ss_pred             hhhhccccccccccCCCCChhhhhhhcCcHHHHHHHHHCCCc-cccccccccccchhhcccCcceeeeeecc-ccccccc
Confidence                      23355566667777777777888888888877 67777788888888888888888888888 7899999


Q ss_pred             ccCCCCCHHHHHhhCCCchhhHHHHHHHHHcCccccccCCCchHHHHHHHHHhhhhhhhhhHHh
Q 011183          230 LTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVRANELNQPRDELRKTVTQIKKDVHTQLEQT  293 (491)
Q Consensus       230 ~d~~G~t~L~~A~~~~~~~~~~~i~~~L~~~ga~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~  293 (491)
                      +|.+|+||||+|++.++.    ++++.|+++|+..+...+.+.+++..+....+.++.+.|+..
T Consensus       326 ~d~~G~T~Lh~A~~~g~~----~iv~~Ll~~GAd~n~~d~~G~t~L~~A~~~~~~~iv~~L~~~  385 (408)
T d1n11a_         326 KTKLGYSPLHQAAQQGHT----DIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVV  385 (408)
T ss_dssp             CCTTSCCHHHHHHHTTCH----HHHHHHHHTTCCSCCCCSSSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred             cCCCCCCHHHHHHHcCCH----HHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHH
Confidence            999999999999987664    488899999998887777788888888777777776666554

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=100.00  E-value=1.3e-32  Score=264.08  Aligned_cols=210  Identities=25%  Similarity=0.350  Sum_probs=190.1

Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCCHHHHHHH
Q 011183           28 LGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAAT  107 (491)
Q Consensus        28 ~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~  107 (491)
                      +|.|||+.||..|+.++|++||+.|++  ++..|.+|.||||+|+..|+.+++++|++++++. ...+..+.+||++|+.
T Consensus        39 ~~~t~l~~A~~~G~~~~v~~Ll~~Gad--vn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~-~~~~~~~~~~L~~a~~  115 (291)
T d1s70b_          39 DDGAVFLAACSSGDTEEVLRLLERGAD--INYANVDGLTALHQACIDDNVDMVKFLVENGANI-NQPDNEGWIPLHAAAS  115 (291)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHHCCC--TTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHH
T ss_pred             CCchHHHHHHHcCCHHHHHHHHHCCCC--CCccCCCCCcHHHHHHhcCCceeeeeeccccccc-cccccccccccccccc
Confidence            356999999999999999999999876  6788999999999999999999999999999886 5677889999999999


Q ss_pred             cCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhCCcc--------------------------cccc
Q 011183          108 RGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQ--------------------------LARR  161 (491)
Q Consensus       108 ~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~--------------------------~~~~  161 (491)
                      .++.++++.|++. +...+..|.+|.+|+++|+..++.+.++.++.....                          ....
T Consensus       116 ~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (291)
T d1s70b_         116 CGYLDIAEYLISQ-GAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVR  194 (291)
T ss_dssp             HTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCC
T ss_pred             ccccchhhccccc-CcccccccccCccccccccccccchhccccccccccccccccccccccccccchhhhccccccccc
Confidence            9999999999987 456778899999999999999999999888864211                          1234


Q ss_pred             cCCCCCCHHHHHHhCCCHHHHHHHHhcCcccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHH
Q 011183          162 TDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIA  241 (491)
Q Consensus       162 ~d~~g~t~Lh~Aa~~~~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~d~~G~t~L~~A  241 (491)
                      .+..|.||||.|+..|+.++++.|++.|++ ++.+|.+|+||||+|+..|+.++|++|++ .|+|++.+|..|+||||+|
T Consensus       195 ~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~d-in~~~~~g~TpL~~A~~~g~~~iv~lLl~-~Gadv~~~d~~G~TaL~~A  272 (291)
T d1s70b_         195 HAKSGGTALHVAAAKGYTEVLKLLIQARYD-VNIKDYDGWTPLHAAAHWGKEEACRILVE-NLCDMEAVNKVGQTAFDVA  272 (291)
T ss_dssp             CTTTCCCHHHHHHHHTCHHHHHHHHTTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCTTTSC
T ss_pred             ccCCCCChhhHHHHcCChhhhcccccceec-ccccccCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCcCCCCCCHHHHH
Confidence            577899999999999999999999999998 78899999999999999999999999999 8999999999999999999


Q ss_pred             hh
Q 011183          242 EG  243 (491)
Q Consensus       242 ~~  243 (491)
                      ++
T Consensus       273 ~e  274 (291)
T d1s70b_         273 DE  274 (291)
T ss_dssp             CS
T ss_pred             HH
Confidence            64

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.97  E-value=1.1e-31  Score=255.10  Aligned_cols=233  Identities=24%  Similarity=0.288  Sum_probs=193.3

Q ss_pred             hhhhccC-CCCCCHHHHHHHcCCHHHHHHHHhc--------cCccccccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCC
Q 011183           20 SVVNEVN-ELGETALFTAADKGHIEVVNELLKY--------STKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSL   90 (491)
Q Consensus        20 ~~l~~~~-~~g~T~Lh~Aa~~g~~~~v~~Ll~~--------~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l   90 (491)
                      ..+|..| ..|.||||+||..|+.++|+.|+.+        |++  ++..|.+|+||||+|+..|+.+++++|+++|+++
T Consensus        23 ~~~n~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gad--vn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~  100 (277)
T d2fo1e1          23 ESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGAD--VNAMDCDENTPLMLAVLARRRRLVAYLMKAGADP  100 (277)
T ss_dssp             TTTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCC--TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS
T ss_pred             cCCCcCCCCCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCC--ccccCCCCCeeecccccccccccccccccccccc
Confidence            4455566 3599999999999999999888643        444  6788999999999999999999999999999997


Q ss_pred             cccCCCCCCCHHHHHHHcCCHHHHHHHHhcCC--CcccccCCCCCcHHHHHHHcCCHH---HHHHHHhCCc-------cc
Q 011183           91 SQTTGPSNATPLVSAATRGHTAVVNELLSKDG--GLLEISRSNGKNALHFAARQGHVD---VVKALLSKDP-------QL  158 (491)
Q Consensus        91 ~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~--~~~~~~d~~g~tpLh~A~~~g~~~---iv~~Ll~~~~-------~~  158 (491)
                       +..|..|.|||++|+..++.+++..+.....  ...+..+..+.++.+.+...+..+   .+..+.+...       ..
T Consensus       101 -n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (277)
T d2fo1e1         101 -TIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAAR  179 (277)
T ss_dssp             -CCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGG
T ss_pred             -ccccccccccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhccccccccccccccccccccccccccc
Confidence             6788999999999999999999998876532  234566788999999999877543   4444443321       11


Q ss_pred             ccccCCCCCCHHHHHHhCCCHHHHHHHHhcCcccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHH
Q 011183          159 ARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTAL  238 (491)
Q Consensus       159 ~~~~d~~g~t~Lh~Aa~~~~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~d~~G~t~L  238 (491)
                      ....+..|+||||.++..++.+++++++.......+.+|..|+||||+|+..|+.+++++|++ .|+|++.+|.+|+|||
T Consensus       180 ~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~-~gadin~~d~~G~T~L  258 (277)
T d2fo1e1         180 KDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQ-QGASVEAVDATDHTAR  258 (277)
T ss_dssp             TSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHH-TTCCSSCCCSSSCCHH
T ss_pred             ccccccCCCCccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHH-CcCCCCCcCCCCCCHH
Confidence            234567899999999999999999987776665588899999999999999999999999999 7999999999999999


Q ss_pred             HHHhhCCCchhhHHHHHHHHHc
Q 011183          239 DIAEGLPSSEEASEIKDCLARC  260 (491)
Q Consensus       239 ~~A~~~~~~~~~~~i~~~L~~~  260 (491)
                      |+|+..++.+    ++++|.++
T Consensus       259 ~~A~~~~~~~----iv~lL~~c  276 (277)
T d2fo1e1         259 QLAQANNHHN----IVDIFDRC  276 (277)
T ss_dssp             HHHHHTTCHH----HHHHHHTT
T ss_pred             HHHHHcCCHH----HHHHHHHh
Confidence            9999988754    77777664

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.6e-30  Score=259.43  Aligned_cols=238  Identities=30%  Similarity=0.393  Sum_probs=204.5

Q ss_pred             hchhhhhccCCCCCCHHHHHHHcCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCC
Q 011183           17 IRSSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGP   96 (491)
Q Consensus        17 ~~~~~l~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~   96 (491)
                      ..+..++..+.+|.+|||.|+..|+.+++++|+++|.+  ++..+..|.||||.++...+.++...++...... ...+.
T Consensus       153 ~~~~~~~~~~~~~~~~L~~A~~~~~~~~~~~Ll~~g~~--~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~-~~~~~  229 (408)
T d1n11a_         153 ERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGS--PHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSA-NAESV  229 (408)
T ss_dssp             HTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCC--SCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCT
T ss_pred             HcCCCCCcCCCcCchHHHHHHHcCCHHHHHHHHhcCCc--ccccCCCCCCcchhhhccchhhhhhhhhhccccc-cccCC
Confidence            45677788888888888888888888888888887765  4667778888888888888888888888877665 45677


Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCCHHHHHHhC
Q 011183           97 SNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKG  176 (491)
Q Consensus        97 ~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~  176 (491)
                      .+.|||++|+..++.++++.+++. ....+..+..|.||++.|+..++.+++++|++++.++ +..+..+.||||.++..
T Consensus       230 ~~~t~l~~a~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~~-~~~~~~~~t~L~~~~~~  307 (408)
T d1n11a_         230 QGVTPLHLAAQEGHAEMVALLLSK-QANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMV-DATTRMGYTPLHVASHY  307 (408)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHTT-TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCSSCCCHHHHHHHS
T ss_pred             CCCCHHHHHHHhCcHhHhhhhhcc-ccccccccCCCCChhhhhhhcCcHHHHHHHHHCCCcc-ccccccccccchhhccc
Confidence            889999999999999999999877 5567778999999999999999999999999999887 67788999999999999


Q ss_pred             CCHHHHHHHHhcCcccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCchhhHHHHHH
Q 011183          177 QSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDC  256 (491)
Q Consensus       177 ~~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~d~~G~t~L~~A~~~~~~~~~~~i~~~  256 (491)
                      ++.++++++++.|++ ++.+|.+|+||||+|++.|+.++|++|++ .|+|++.+|.+|+||||+|...++.+.+ ++.+.
T Consensus       308 ~~~~~~~~ll~~g~~-in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~-~GAd~n~~d~~G~t~L~~A~~~~~~~iv-~~L~~  384 (408)
T d1n11a_         308 GNIKLVKFLLQHQAD-VNAKTKLGYSPLHQAAQQGHTDIVTLLLK-NGASPNEVSSDGTTPLAIAKRLGYISVT-DVLKV  384 (408)
T ss_dssp             SCSHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCSCCCCSSSCCHHHHHHHTTCHHHH-HHHHH
T ss_pred             Ccceeeeeecccccc-ccccCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHHcCCHHHH-HHHHH
Confidence            999999999999998 78999999999999999999999999999 8999999999999999999998876533 23344


Q ss_pred             HHHcCc
Q 011183          257 LARCGA  262 (491)
Q Consensus       257 L~~~ga  262 (491)
                      +.+.+.
T Consensus       385 ~~~~~~  390 (408)
T d1n11a_         385 VTDETS  390 (408)
T ss_dssp             HCCCCS
T ss_pred             HHhccc
Confidence            444443

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=2.3e-30  Score=239.18  Aligned_cols=213  Identities=22%  Similarity=0.211  Sum_probs=189.7

Q ss_pred             hhhHHHHHhhchhhhhccCCCCCCHHHHHHHcCCHHHHHHHHhccCccc-cccCCCCCChHHHHHHHcCcHHHHHHHHhc
Q 011183            8 AEFDTEVAEIRSSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEG-LTRKNRSGFDPLHIAAVQGHHAIVQVLLDH   86 (491)
Q Consensus         8 ~~~~~~~~~~~~~~l~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~-l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~   86 (491)
                      .+...++++..+.+++.+|.+|.||||+|+..|+.+++++|++.|++.+ ....+..|.||+|+|+..+..++++.++..
T Consensus        13 ~~~v~~Ll~~~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (229)
T d1ixva_          13 FFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDR   92 (229)
T ss_dssp             HHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHSS
T ss_pred             HHHHHHHHHcCCCcccccCCCCCCHHHHHHHcCCccccchhhhhhccccccccccccccccccccccccccccccccccc
Confidence            4566778888899999999999999999999999999999999987654 346788899999999999999999999998


Q ss_pred             CCCC-cccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhCCcccccccCCC
Q 011183           87 DPSL-SQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKK  165 (491)
Q Consensus        87 ~~~l-~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~  165 (491)
                      +... ....+..+.||++.++..++.++++.|++. +......|.+|+||||+|+..|+.++++.|++.++...+.+|.+
T Consensus        93 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~-~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~in~~d~~  171 (229)
T d1ixva_          93 PLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIEN-GASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQ  171 (229)
T ss_dssp             SSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTTTCCCSCCCCTT
T ss_pred             cccccccccccccccccccccccchhhhhhhhhhh-cccccccCCCCCCccchhhhcccccccccccccccccccccccc
Confidence            7654 345667889999999999999999999987 55567789999999999999999999999999987777889999


Q ss_pred             CCCHHHHHHhCCCHHHHHHHHhc-CcccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCC
Q 011183          166 GQTALHMAVKGQSCEVVKLLLEA-DAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTN  226 (491)
Q Consensus       166 g~t~Lh~Aa~~~~~~iv~~Ll~~-~~~~~~~~d~~G~TpLh~A~~~~~~~iv~~Ll~~~g~~  226 (491)
                      |+||||+|++.|+.+++++|++. |++ ++.+|.+|+||||+|+.   .+++++|++ .|+|
T Consensus       172 g~TpLh~A~~~~~~~~v~~Ll~~~gad-~~~~d~~g~t~l~~A~~---~~~~~~Ll~-~g~d  228 (229)
T d1ixva_         172 GWTPLFHALAEGHGDAAVLLVEKYGAE-YDLVDNKGAKAEDVALN---EQVKKFFLN-NVVD  228 (229)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHHHCCC-SCCCCTTSCCTGGGCSC---HHHHHHHHH-HCCC
T ss_pred             cCCchhhhcccccHHHHHHHHHhcCCC-CCCcCCCCCCHHHHHhh---HHHHHHHHH-cCCC
Confidence            99999999999999999999974 788 78999999999999984   579999998 6775

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=1.1e-30  Score=245.48  Aligned_cols=215  Identities=24%  Similarity=0.256  Sum_probs=167.1

Q ss_pred             hhhHHHHHhh--chhhhhccCCCCCCHHHHHHHcCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHh
Q 011183            8 AEFDTEVAEI--RSSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLD   85 (491)
Q Consensus         8 ~~~~~~~~~~--~~~~l~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~   85 (491)
                      .++...+++.  ....++..|.+|+||||+|+..|+.++++.|++.|++  ++..|.+|.||||+|+..|+.++++.|++
T Consensus        22 ~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~--i~~~d~~g~tpL~~A~~~~~~~~~~~Ll~   99 (255)
T d1oy3d_          22 EPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAG--VLVAERGGHTALHLACRVRAHTCACVLLQ   99 (255)
T ss_dssp             HHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC--SSCCCTTSCCHHHHHTTTTCHHHHHHHSS
T ss_pred             HHHHHHHHHcCCCcccccCcCCCCCCccchHHhhccccccccccccccc--ccccccccchhhhhhhccCchHHHHHHHh
Confidence            4455555553  2345888999999999999999999999999999876  67789999999999999999999999998


Q ss_pred             cCCCCcccCCC---------CCCC---HHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHh
Q 011183           86 HDPSLSQTTGP---------SNAT---PLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLS  153 (491)
Q Consensus        86 ~~~~l~~~~~~---------~g~t---pL~~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~  153 (491)
                      ...........         ...+   ++..............+....+...+..|.+|.||||+|+..|+.+++++|++
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~  179 (255)
T d1oy3d_         100 PRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRD  179 (255)
T ss_dssp             SCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             hccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCcccccccccccccccccchhc
Confidence            76543211111         0111   11111111112222222233344567788999999999999999999999999


Q ss_pred             CCcccccccCCCCCCHHHHHHhCCCHHHHHHHHhcCcccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCC
Q 011183          154 KDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTN  226 (491)
Q Consensus       154 ~~~~~~~~~d~~g~t~Lh~Aa~~~~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~~~~~iv~~Ll~~~g~~  226 (491)
                      .+.+.....+..|.||||+|++.++.+++++|+++|++ ++.+|..|+||||+|+..++.+++++|++ .|++
T Consensus       180 ~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gad-in~~d~~g~t~L~~A~~~~~~~i~~~Ll~-~Ga~  250 (255)
T d1oy3d_         180 AGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGAD-PTARMYGGRTPLGSALLRPNPILARLLRA-HGAP  250 (255)
T ss_dssp             HTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHTSSCHHHHHHHHH-TTCC
T ss_pred             ccccccccccccccccccccccccHHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHCCCHHHHHHHHH-cCCC
Confidence            99998777788999999999999999999999999998 78999999999999999999999999999 7886

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.4e-30  Score=236.31  Aligned_cols=216  Identities=25%  Similarity=0.289  Sum_probs=191.3

Q ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhcc--CccccccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCCHHHH
Q 011183           27 ELGETALFTAADKGHIEVVNELLKYS--TKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVS  104 (491)
Q Consensus        27 ~~g~T~Lh~Aa~~g~~~~v~~Ll~~~--~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~  104 (491)
                      ++|+||||+||..|+.++|+.|++..  ...+++..|..|+||||+|+..|+.++++.|++++++. +..+..+.++++.
T Consensus         1 ~dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~-~~~~~~~~~~~~~   79 (228)
T d1k1aa_           1 EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASP-MALDRHGQTAAHL   79 (228)
T ss_dssp             CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHH
T ss_pred             CCCccHHHHHHHcCCHHHHHHHHHHHHHCCCCCCccCCCCCccceehhcccccccccccccccccc-ccccccccccccc
Confidence            47999999999999999999998632  12236788999999999999999999999999999887 5677889999999


Q ss_pred             HHHcCCHHHHHHHHhcCCC---cccccCCCCCcHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCCHHHHHHhCCCHHH
Q 011183          105 AATRGHTAVVNELLSKDGG---LLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEV  181 (491)
Q Consensus       105 A~~~g~~~~v~~LL~~~~~---~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~~~~i  181 (491)
                      |...++.++++.+......   ..+.......++||.+.........+.|.....+.....+..|.++||.|+..+..++
T Consensus        80 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~  159 (228)
T d1k1aa_          80 ACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSM  159 (228)
T ss_dssp             HHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHH
T ss_pred             ccccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhhh
Confidence            9999999999887764322   2344556788999999999999999999999888777778899999999999999999


Q ss_pred             HHHHHhcCcccccCCCCCCChHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCC
Q 011183          182 VKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLP  245 (491)
Q Consensus       182 v~~Ll~~~~~~~~~~d~~G~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~d~~G~t~L~~A~~~~  245 (491)
                      ++.+++.+.. .+.+|..|+||||+|+..|+.+++++|++ .|+|++.+|.+|+||||+|++.+
T Consensus       160 ~~~~~~~~~~-~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~-~Gad~n~~d~~G~TpL~~A~~~~  221 (228)
T d1k1aa_         160 VQLLLQHGAN-VNAQMYSGSSALHSASGRGLLPLVRTLVR-SGADSSLKNCHNDTPLMVARSRR  221 (228)
T ss_dssp             HHHHHHTTCC-TTCBCTTSCBHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCTTTTCSSHH
T ss_pred             hhhhhhhccc-cccccccCcchHHHHHHcCCHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHhCC
Confidence            9999999987 77889999999999999999999999998 79999999999999999998643

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=6.5e-30  Score=243.86  Aligned_cols=232  Identities=28%  Similarity=0.361  Sum_probs=170.7

Q ss_pred             CCCHHHHHHHcCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCc-----------------
Q 011183           29 GETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLS-----------------   91 (491)
Q Consensus        29 g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~-----------------   91 (491)
                      ++|+||.|++.|+.++|++|++.|++.+ ...+..|.||||+|+..|+.+++++|++.++...                 
T Consensus         5 ~~~~L~~Ai~~~~~e~vk~Ll~~G~din-~~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~~~~~~~~~~~~~~~~~~~~   83 (285)
T d1wdya_           5 DNHLLIKAVQNEDVDLVQQLLEGGANVN-FQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAG   83 (285)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred             CcHHHHHHHHcCCHHHHHHHHHCCCCcC-ccCCCCCCCHHHHHHHcCCHHHhhhhccccccccccccccchhhHHHhhcC
Confidence            3456666666666666666666554422 1223346666666666666666666665554331                 


Q ss_pred             ---------------ccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCC---------cccccCCCCCcHHHHHHHcCCHHH
Q 011183           92 ---------------QTTGPSNATPLVSAATRGHTAVVNELLSKDGG---------LLEISRSNGKNALHFAARQGHVDV  147 (491)
Q Consensus        92 ---------------~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~---------~~~~~d~~g~tpLh~A~~~g~~~i  147 (491)
                                     ...+..+.++++.|+..|+...+..++.....         .....+..|.||||+|+..|+.++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~  163 (285)
T d1wdya_          84 SVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEV  163 (285)
T ss_dssp             CHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHH
T ss_pred             CccccchhhhhcccccccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCCHHH
Confidence                           23345566777777777777777777654322         112345678999999999999999


Q ss_pred             HHHHHhC-CcccccccCCCCCCHHHHHHhC----CCHHHHHHHHhcCcccccCCCCCCChHHHHHHHcCcHHHHHHHhcC
Q 011183          148 VKALLSK-DPQLARRTDKKGQTALHMAVKG----QSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLSL  222 (491)
Q Consensus       148 v~~Ll~~-~~~~~~~~d~~g~t~Lh~Aa~~----~~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~~~~~iv~~Ll~~  222 (491)
                      +++|+++ +.++ +..+..|.++++.+...    +..+++++|+++|++ ++.+|..|.||||.|+..|+.+++++|++.
T Consensus       164 ~~~Ll~~~~~~i-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~-~n~~~~~g~t~L~~a~~~~~~~~v~~lL~~  241 (285)
T d1wdya_         164 LKILLDEMGADV-NACDNMGRNALIHALLSSDDSDVEAITHLLLDHGAD-VNVRGERGKTPLILAVEKKHLGLVQRLLEQ  241 (285)
T ss_dssp             HHHHHHTSCCCT-TCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCC-SSCCCTTSCCHHHHHHHTTCHHHHHHHHHS
T ss_pred             HHHHHhccCCCc-ccccCCCCcccccccccccchHHHHHHHHHHHCCCC-CCccCCCCCCccchhhhcCcHHHHHHHHHc
Confidence            9999976 4454 77888888888776543    335789999999998 788999999999999999999999999987


Q ss_pred             CCCCcccccCCCCCHHHHHhhCCCchhhHHHHHHHHHcCcccccc
Q 011183          223 PDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAVRANE  267 (491)
Q Consensus       223 ~g~~~~~~d~~G~t~L~~A~~~~~~~~~~~i~~~L~~~ga~~~~~  267 (491)
                      .|++++.+|.+|.||||+|++.++.    +++++|+++||..+..
T Consensus       242 ~g~din~~d~~G~TpL~~A~~~~~~----eiv~~Ll~~GAd~n~~  282 (285)
T d1wdya_         242 EHIEINDTDSDGKTALLLAVELKLK----KIAELLCKRGASTDCG  282 (285)
T ss_dssp             SSCCTTCCCTTSCCHHHHHHHTTCH----HHHHHHHHHSSCSCCS
T ss_pred             CCCCCcCCCCCCCCHHHHHHHcCCH----HHHHHHHHCCCCCCcc
Confidence            8999999999999999999998764    4899999999986543

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=6.1e-31  Score=242.33  Aligned_cols=192  Identities=26%  Similarity=0.293  Sum_probs=138.4

Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHhcc--CccccccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCCHHHHH
Q 011183           28 LGETALFTAADKGHIEVVNELLKYS--TKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSA  105 (491)
Q Consensus        28 ~g~T~Lh~Aa~~g~~~~v~~Ll~~~--~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A  105 (491)
                      +|+||||+|+..|+.++++.|++..  ....++.+|.+|+||||+|+..|+.+++++|+++|+++ ...|..|.|||+.|
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~-~~~d~~g~t~l~~~   79 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDP-ELRDFRGNTPLHLA   79 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCS-CCCCTTCCCHHHHH
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhCCCCcccCCCCCCccccccccccccccccccccccccc-cccccccccccccc
Confidence            5888999998888865555544421  11236778888888888888888888888888888887 66788888888888


Q ss_pred             HHcCCHHHHHHHHhcCCC-----cccccCCCCCcHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCCHHHHHHhCCCHH
Q 011183          106 ATRGHTAVVNELLSKDGG-----LLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCE  180 (491)
Q Consensus       106 ~~~g~~~~v~~LL~~~~~-----~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~~~~  180 (491)
                      +..|+.++++.|++....     .......+|.||||.|+..++.++++.|++.++......+.+|.||||+|++.|+.+
T Consensus        80 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~~~  159 (221)
T d1iknd_          80 CEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPD  159 (221)
T ss_dssp             HHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHH
T ss_pred             cccccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheeeecccCcccccccccCCCCccccccccccHH
Confidence            888888888888865321     223334456777777777777777777777766665555566777777777777777


Q ss_pred             HHHHHHhcCcccccCCCCCCChHHHHHHHcCcHHHHHHHhc
Q 011183          181 VVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLS  221 (491)
Q Consensus       181 iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~~~~~iv~~Ll~  221 (491)
                      ++++|+++|++ ++.+|.+|+||||+|+..++.+++++|++
T Consensus       160 ~v~~Ll~~gad-~~~~~~~G~tpl~~A~~~~~~~~~~~l~~  199 (221)
T d1iknd_         160 LVSLLLKCGAD-VNRVTYQGYSPYQLTWGRPSTRIQQQLGQ  199 (221)
T ss_dssp             HHHHHHTTTCC-SCCCCTTCCCGGGGCTTSSCHHHHHHHHT
T ss_pred             HHHHHHhcCCc-ccccCCCCCCHHHHHHHCCCHHHHHHHHH
Confidence            77777777776 66677777777777777777777777766

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.3e-29  Score=233.22  Aligned_cols=194  Identities=25%  Similarity=0.320  Sum_probs=165.0

Q ss_pred             CCChHHHHHHHcCcHHH----HHHHHhcCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHH
Q 011183           63 SGFDPLHIAAVQGHHAI----VQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHF  138 (491)
Q Consensus        63 ~g~TpLh~A~~~g~~~i----v~~Ll~~~~~l~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~  138 (491)
                      +|.||||+|+..|+.++    ++.+...++++ +..|.+|+||||+|+..|+.+++++|++. +.+++..|.+|.||||.
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~~~~i-n~~d~~g~TpLh~A~~~~~~~iv~~L~~~-g~d~~~~d~~g~t~l~~   78 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFL-NFQNNLQQTPLHLAVITNQPEIAEALLGA-GCDPELRDFRGNTPLHL   78 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-----CCCC-CCCCTTCCCHHHHHHHTTCHHHHHCCCSC-CCCSCCCCTTCCCHHHH
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhCCCCc-ccCCCCCCccccccccccccccccccccc-ccccccccccccccccc
Confidence            59999999999999655    45555667776 67899999999999999999999999987 56788899999999999


Q ss_pred             HHHcCCHHHHHHHHhCCcc-----cccccCCCCCCHHHHHHhCCCHHHHHHHHhcCcccccCCCCCCChHHHHHHHcCcH
Q 011183          139 AARQGHVDVVKALLSKDPQ-----LARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRT  213 (491)
Q Consensus       139 A~~~g~~~iv~~Ll~~~~~-----~~~~~d~~g~t~Lh~Aa~~~~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~~~~  213 (491)
                      ++..|+.++++.|++.+..     ........|.||||.|+..++.+.+++|++.++.+....+.+|+||||+|+..|+.
T Consensus        79 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~~  158 (221)
T d1iknd_          79 ACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNP  158 (221)
T ss_dssp             HHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCH
T ss_pred             ccccccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheeeecccCcccccccccCCCCccccccccccH
Confidence            9999999999999987543     23445567899999999999999999999999986666678899999999999999


Q ss_pred             HHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCchhhHHHHHHHHHcCcc
Q 011183          214 EIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSEEASEIKDCLARCGAV  263 (491)
Q Consensus       214 ~iv~~Ll~~~g~~~~~~d~~G~t~L~~A~~~~~~~~~~~i~~~L~~~ga~  263 (491)
                      +++++|++ .|+|++.+|.+|+||||+|+..++.+    +.+.|.+.+..
T Consensus       159 ~~v~~Ll~-~gad~~~~~~~G~tpl~~A~~~~~~~----~~~~l~~~~~~  203 (221)
T d1iknd_         159 DLVSLLLK-CGADVNRVTYQGYSPYQLTWGRPSTR----IQQQLGQLTLE  203 (221)
T ss_dssp             HHHHHHHT-TTCCSCCCCTTCCCGGGGCTTSSCHH----HHHHHHTTSCG
T ss_pred             HHHHHHHh-cCCcccccCCCCCCHHHHHHHCCCHH----HHHHHHHcCCc
Confidence            99999998 89999999999999999999876654    66666665543

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.96  E-value=1.9e-28  Score=222.86  Aligned_cols=206  Identities=25%  Similarity=0.359  Sum_probs=156.7

Q ss_pred             hhhHHHHHhhchhhhhc-cCCCCCCHHHHHHHcCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhc
Q 011183            8 AEFDTEVAEIRSSVVNE-VNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDH   86 (491)
Q Consensus         8 ~~~~~~~~~~~~~~l~~-~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~   86 (491)
                      +|.+..+++ ++.++|. .|.+|.||||+||..|+.+++++|++.+++  ++..+..+.++++.++..++..........
T Consensus         2 ~~~v~~Ll~-~g~din~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~--~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (209)
T d1ot8a_           2 AQVISDLLA-QGAELNATMDKTGETSLHLAARFARADAAKRLLDAGAD--ANSQDNTGRTPLHAAVAADAMGVFQILLRN   78 (209)
T ss_dssp             HHHHHHHHH-HHHHHHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCC--TTCCCTTSCCHHHHHHHTTCHHHHHHHHTC
T ss_pred             HHHHHHHHH-CCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhccc--cccccccccccccccccccccccccccccc
Confidence            355556665 5666776 578888888888888888888888887665  466777788888888888887777777766


Q ss_pred             CCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhCCcccccccCCCC
Q 011183           87 DPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKG  166 (491)
Q Consensus        87 ~~~l~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g  166 (491)
                      ...........+.++.+.+.........+.|.+. +.+++..+..|.|||+.++..+..++++.+++.+.++ +..|..|
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~-~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~-~~~d~~g  156 (209)
T d1ot8a_          79 RATNLNARMHDGTTPLILAARLAIEGMVEDLITA-DADINAADNSGKTALHWAAAVNNTEAVNILLMHHANR-DAQDDKD  156 (209)
T ss_dssp             TTCCTTCCCTTCCCHHHHHHHTTCTTHHHHHHHT-TCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTC
T ss_pred             cccccccccccccccccccccccchhhhhhhhhh-cccccccCCCCCCcchhhcccCcceeeeeeccccccc-ccccccc
Confidence            6555555666677788877777777777777765 4556677778888888888888888888888887775 6667788


Q ss_pred             CCHHHHHHhCCCHHHHHHHHhcCcccccCCCCCCChHHHHHHHcCcHHHHHHH
Q 011183          167 QTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTEL  219 (491)
Q Consensus       167 ~t~Lh~Aa~~~~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~~~~~iv~~L  219 (491)
                      .||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+++|+.++|++|
T Consensus       157 ~TpL~~A~~~g~~~~v~~Ll~~gad-~n~~d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         157 ETPLFLAAREGSYEASKALLDNFAN-REITDHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             ccccchhccccHHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHcCCHHHHhhc
Confidence            8888888888888888888888887 677788888888888888888888765

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.96  E-value=3e-28  Score=221.57  Aligned_cols=201  Identities=25%  Similarity=0.314  Sum_probs=183.9

Q ss_pred             HHHHHHHHhccCcccccc-CCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhc
Q 011183           42 IEVVNELLKYSTKEGLTR-KNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSK  120 (491)
Q Consensus        42 ~~~v~~Ll~~~~~~~l~~-~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~  120 (491)
                      .|+|++|+++|++  ++. .|.+|.||||+||..|+.+++++|++.++++ +..+..+.++++.++..++..........
T Consensus         2 ~~~v~~Ll~~g~d--in~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~-n~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (209)
T d1ot8a_           2 AQVISDLLAQGAE--LNATMDKTGETSLHLAARFARADAAKRLLDAGADA-NSQDNTGRTPLHAAVAADAMGVFQILLRN   78 (209)
T ss_dssp             HHHHHHHHHHHHH--HHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHTC
T ss_pred             HHHHHHHHHCCCC--cCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhcccc-ccccccccccccccccccccccccccccc
Confidence            4899999999876  554 5889999999999999999999999999997 67889999999999999999988888777


Q ss_pred             CCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCCHHHHHHhCCCHHHHHHHHhcCcccccCCCCCC
Q 011183          121 DGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFG  200 (491)
Q Consensus       121 ~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~~~~iv~~Ll~~~~~~~~~~d~~G  200 (491)
                      ...........|.++.+.+.........+.|...+.++ +..+..|+||||.++..+..++++.+++.+.+ ++..|..|
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~-~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~-~~~~d~~g  156 (209)
T d1ot8a_          79 RATNLNARMHDGTTPLILAARLAIEGMVEDLITADADI-NAADNSGKTALHWAAAVNNTEAVNILLMHHAN-RDAQDDKD  156 (209)
T ss_dssp             TTCCTTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCCT-TCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTC
T ss_pred             cccccccccccccccccccccccchhhhhhhhhhcccc-cccCCCCCCcchhhcccCcceeeeeecccccc-cccccccc
Confidence            66666667778999999999999999999999998886 67799999999999999999999999999988 78899999


Q ss_pred             ChHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHhhCCCch
Q 011183          201 NTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAEGLPSSE  248 (491)
Q Consensus       201 ~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~d~~G~t~L~~A~~~~~~~  248 (491)
                      +||||+|+..|+.+++++|++ .|+|++.+|..|+||||+|++.++.+
T Consensus       157 ~TpL~~A~~~g~~~~v~~Ll~-~gad~n~~d~~g~Tpl~~A~~~~~~~  203 (209)
T d1ot8a_         157 ETPLFLAAREGSYEASKALLD-NFANREITDHMDRLPRDVASERLHHD  203 (209)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             ccccchhccccHHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHHcCCHH
Confidence            999999999999999999999 89999999999999999999988765

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=2.9e-27  Score=225.22  Aligned_cols=222  Identities=24%  Similarity=0.292  Sum_probs=187.0

Q ss_pred             hhhhHHHHHhhchhhhhccCC-CCCCHHHHHHHcCCHHHHHHHHhccCcc------------------------------
Q 011183            7 GAEFDTEVAEIRSSVVNEVNE-LGETALFTAADKGHIEVVNELLKYSTKE------------------------------   55 (491)
Q Consensus         7 ~~~~~~~~~~~~~~~l~~~~~-~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~------------------------------   55 (491)
                      ..|.+..+++ .+.++|.++. .|.||||+|+..|+.+++++|++.+...                              
T Consensus        17 ~~e~vk~Ll~-~G~din~~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (285)
T d1wdya_          17 DVDLVQQLLE-GGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKG   95 (285)
T ss_dssp             CHHHHHHHHH-TTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred             CHHHHHHHHH-CCCCcCccCCCCCCCHHHHHHHcCCHHHhhhhccccccccccccccchhhHHHhhcCCccccchhhhhc
Confidence            3455555554 6788887654 6999999999999999999999875421                              


Q ss_pred             -ccccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCc---------ccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcc
Q 011183           56 -GLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLS---------QTTGPSNATPLVSAATRGHTAVVNELLSKDGGLL  125 (491)
Q Consensus        56 -~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~---------~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~  125 (491)
                       .....+..|.|+++.|+..|+...++.++....+..         ...+..|.||||+|+.+|+.+++++|+++.+.++
T Consensus        96 ~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~i  175 (285)
T d1wdya_          96 ADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADV  175 (285)
T ss_dssp             CCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCT
T ss_pred             ccccccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCCHHHHHHHHhccCCCc
Confidence             122345668899999999999999999988765542         1334568999999999999999999999888889


Q ss_pred             cccCCCCCcHHHHHHHcC----CHHHHHHHHhCCcccccccCCCCCCHHHHHHhCCCHHHHHHHHhc-CcccccCCCCCC
Q 011183          126 EISRSNGKNALHFAARQG----HVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEA-DAAIVMLPDKFG  200 (491)
Q Consensus       126 ~~~d~~g~tpLh~A~~~g----~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~~~~iv~~Ll~~-~~~~~~~~d~~G  200 (491)
                      +..+..|.++++.+...+    ..+++++|+++++++ +.+|..|.||||.|++.|+.+++++|++. |.+ ++.+|.+|
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~-n~~~~~g~t~L~~a~~~~~~~~v~~lL~~~g~d-in~~d~~G  253 (285)
T d1wdya_         176 NACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADV-NVRGERGKTPLILAVEKKHLGLVQRLLEQEHIE-INDTDSDG  253 (285)
T ss_dssp             TCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCS-SCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCC-TTCCCTTS
T ss_pred             ccccCCCCcccccccccccchHHHHHHHHHHHCCCCC-CccCCCCCCccchhhhcCcHHHHHHHHHcCCCC-CcCCCCCC
Confidence            999999999988776543    457999999999997 77899999999999999999999999986 556 88999999


Q ss_pred             ChHHHHHHHcCcHHHHHHHhcCCCCCcccccC
Q 011183          201 NTALHVATRKKRTEIVTELLSLPDTNVNALTR  232 (491)
Q Consensus       201 ~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~d~  232 (491)
                      +||||+|++.|+.+++++|++ .|+|+|++|.
T Consensus       254 ~TpL~~A~~~~~~eiv~~Ll~-~GAd~n~~d~  284 (285)
T d1wdya_         254 KTALLLAVELKLKKIAELLCK-RGASTDCGDL  284 (285)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHH-HSSCSCCSSC
T ss_pred             CCHHHHHHHcCCHHHHHHHHH-CCCCCCcccC
Confidence            999999999999999999999 8999999884

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.95  E-value=1.3e-28  Score=235.94  Aligned_cols=205  Identities=26%  Similarity=0.321  Sum_probs=179.1

Q ss_pred             hhhhHHHHHhhchhhhhccCCCCCCHHHHHHHcCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhc
Q 011183            7 GAEFDTEVAEIRSSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDH   86 (491)
Q Consensus         7 ~~~~~~~~~~~~~~~l~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~   86 (491)
                      ..+.+..+++ .|.++|..|.+|.||||+|+..|+.++|++|++++.+  ....+..+.|||+.|+..|+.++++.|+++
T Consensus        52 ~~~~v~~Ll~-~Gadvn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~--~~~~~~~~~~~L~~a~~~~~~~~~~~l~~~  128 (291)
T d1s70b_          52 DTEEVLRLLE-RGADINYANVDGLTALHQACIDDNVDMVKFLVENGAN--INQPDNEGWIPLHAAASCGYLDIAEYLISQ  128 (291)
T ss_dssp             CHHHHHHHHH-HCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCC--TTCCCTTSCCHHHHHHHHTCHHHHHHHHHT
T ss_pred             CHHHHHHHHH-CCCCCCccCCCCCcHHHHHHhcCCceeeeeecccccc--cccccccccccccccccccccchhhccccc
Confidence            3455666665 6788999999999999999999999999999998876  466788899999999999999999999999


Q ss_pred             CCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCC--------------------------cccccCCCCCcHHHHHH
Q 011183           87 DPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGG--------------------------LLEISRSNGKNALHFAA  140 (491)
Q Consensus        87 ~~~l~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~--------------------------~~~~~d~~g~tpLh~A~  140 (491)
                      ++.. ...|..+.+|+++|+..++.+.+..++...+.                          .....+.+|.||||.|+
T Consensus       129 ~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~  207 (291)
T d1s70b_         129 GAHV-GAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAA  207 (291)
T ss_dssp             TCCT-TCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHH
T ss_pred             Cccc-ccccccCccccccccccccchhccccccccccccccccccccccccccchhhhcccccccccccCCCCChhhHHH
Confidence            9876 67788999999999999999998888864332                          23445678999999999


Q ss_pred             HcCCHHHHHHHHhCCcccccccCCCCCCHHHHHHhCCCHHHHHHHHhcCcccccCCCCCCChHHHHHHHcCcHHHHHHHh
Q 011183          141 RQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELL  220 (491)
Q Consensus       141 ~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~~~~~iv~~Ll  220 (491)
                      ..|+.++++.|++.++++ +.+|..|+||||+|++.|+.+++++|+++|++ ++.+|.+|+||||+|++    +++++|.
T Consensus       208 ~~~~~~~~~~Ll~~g~di-n~~~~~g~TpL~~A~~~g~~~iv~lLl~~Gad-v~~~d~~G~TaL~~A~e----~~~~~L~  281 (291)
T d1s70b_         208 AKGYTEVLKLLIQARYDV-NIKDYDGWTPLHAAAHWGKEEACRILVENLCD-MEAVNKVGQTAFDVADE----DILGYLE  281 (291)
T ss_dssp             HHTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCTTTSCCS----GGGHHHH
T ss_pred             HcCChhhhcccccceecc-cccccCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHH----HHHHHHH
Confidence            999999999999999987 77899999999999999999999999999999 78999999999999975    3555554


Q ss_pred             c
Q 011183          221 S  221 (491)
Q Consensus       221 ~  221 (491)
                      +
T Consensus       282 ~  282 (291)
T d1s70b_         282 E  282 (291)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.95  E-value=2.8e-27  Score=224.45  Aligned_cols=202  Identities=23%  Similarity=0.249  Sum_probs=171.9

Q ss_pred             hchhhhhccCCCCCCHHHHHHHcCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhcCCC--CcccC
Q 011183           17 IRSSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPS--LSQTT   94 (491)
Q Consensus        17 ~~~~~l~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~--l~~~~   94 (491)
                      ..|+++|.+|.+|+||||+|+..|+.++|++|+++|++  ++.+|.+|.||||.|+..++.++++.+......  .....
T Consensus        62 ~~Gadvn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad--~n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~  139 (277)
T d2fo1e1          62 AAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGAD--PTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEEL  139 (277)
T ss_dssp             HTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC--SCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCC
T ss_pred             HcCCCccccCCCCCeeeccccccccccccccccccccc--cccccccccccccchhhhcchhhhhhhhhccccccccccc
Confidence            35789999999999999999999999999999999877  677899999999999999999999999876421  22456


Q ss_pred             CCCCCCHHHHHHHcCCHH---HHHHHHhcCC-------CcccccCCCCCcHHHHHHHcCCHHHHHHHHhCCcccccccCC
Q 011183           95 GPSNATPLVSAATRGHTA---VVNELLSKDG-------GLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDK  164 (491)
Q Consensus        95 ~~~g~tpL~~A~~~g~~~---~v~~LL~~~~-------~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~  164 (491)
                      +..+.++.+.+...+..+   .+..+.+...       ...+..+..|.||||.++..++.++++.++.......+..|.
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~  219 (277)
T d2fo1e1         140 DRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDE  219 (277)
T ss_dssp             CTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCT
T ss_pred             ccccchhHHHHHhcccccccccccccccccccccccccccccccccCCCCccccccccccccccccccccccccccccCC
Confidence            778889999999877644   3333333211       123456678999999999999999999877665555578899


Q ss_pred             CCCCHHHHHHhCCCHHHHHHHHhcCcccccCCCCCCChHHHHHHHcCcHHHHHHHhc
Q 011183          165 KGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLS  221 (491)
Q Consensus       165 ~g~t~Lh~Aa~~~~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~~~~~iv~~Ll~  221 (491)
                      .|+||||+|++.|+.+++++|++.|++ ++.+|.+|+||||+|++.|+.++|++|++
T Consensus       220 ~g~tpL~~A~~~g~~~iv~~Ll~~gad-in~~d~~G~T~L~~A~~~~~~~iv~lL~~  275 (277)
T d2fo1e1         220 DGKTPIMLAAQEGRIEVVMYLIQQGAS-VEAVDATDHTARQLAQANNHHNIVDIFDR  275 (277)
T ss_dssp             TCCCHHHHHHHHTCHHHHHHHHHTTCC-SSCCCSSSCCHHHHHHHTTCHHHHHHHHT
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHCcCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            999999999999999999999999999 78999999999999999999999999987

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.7e-26  Score=200.00  Aligned_cols=152  Identities=26%  Similarity=0.357  Sum_probs=82.4

Q ss_pred             hHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCH
Q 011183           66 DPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHV  145 (491)
Q Consensus        66 TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~  145 (491)
                      +|||.||..|+.++++.|+++|+++ +..|..|.||||+|+ .|+.+++++|+++ +.+++..+.+|.+|++.++..++.
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~-n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~-~a~~~~~~~~~~~~l~~~~~~~~~   79 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNV-NAQNGFGRTALQVMK-LGNPEIARRLLLR-GANPDLKDRTGFAVIHDAARAGFL   79 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCT-TCCCTTSCCHHHHCC-SSCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCc-CccCCcccccccccc-ccccccccccccc-ccccccccccCccccccccccccc
Confidence            4555555555555555555555554 344555555555443 4455555555544 333445555555555555555555


Q ss_pred             HHHHHHHhCCcccccccCCCCCCHHHHHHhCCCHHHHHHHHhcCcccccCCCCCCChHHHHHHHcCcHHHHHHHhc
Q 011183          146 DVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLS  221 (491)
Q Consensus       146 ~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~~~~~iv~~Ll~  221 (491)
                      +.++.+++.+.+. +..|..|.+|||+|++.++.+++++|+++++...+.+|.+|.||||+|++.++.+++++|++
T Consensus        80 ~~~~~l~~~~~~~-~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~~~~~iv~~Ll~  154 (156)
T d1ihba_          80 DTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQA  154 (156)
T ss_dssp             HHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             ccccccccccccc-cccccccccccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            5555555555544 44455555555555555555555555555554355555555566666655555555555554

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=2.8e-26  Score=198.57  Aligned_cols=154  Identities=25%  Similarity=0.340  Sum_probs=143.3

Q ss_pred             CHHHHHHHcCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCC
Q 011183           31 TALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGH  110 (491)
Q Consensus        31 T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~~g~  110 (491)
                      +|||+||..|+.++|+.|++.|.+  ++.+|.+|.||||+|+ .|+.+++++|+++++++ ...+..+.+|++.++..++
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d--~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~-~~~~~~~~~~l~~~~~~~~   78 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVN--VNAQNGFGRTALQVMK-LGNPEIARRLLLRGANP-DLKDRTGFAVIHDAARAGF   78 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCC--TTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTC
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCC--cCccCCcccccccccc-ccccccccccccccccc-ccccccCcccccccccccc
Confidence            799999999999999999999876  6778999999999886 79999999999999997 6788899999999999999


Q ss_pred             HHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCCHHHHHHhCCCHHHHHHHHhcC
Q 011183          111 TAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEAD  189 (491)
Q Consensus       111 ~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~~~~iv~~Ll~~~  189 (491)
                      .+.++.|++. +...+..|..|.+|+|.|+..++.++++.|+++++...+.+|.+|+||||+|++.++.+++++|+++|
T Consensus        79 ~~~~~~l~~~-~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~~~~~iv~~Ll~~G  156 (156)
T d1ihba_          79 LDTLQTLLEF-QADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG  156 (156)
T ss_dssp             HHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred             cccccccccc-cccccccccccccccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            9999999987 45578889999999999999999999999999998666888999999999999999999999999876

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.93  E-value=3.5e-28  Score=239.19  Aligned_cols=235  Identities=19%  Similarity=0.134  Sum_probs=164.4

Q ss_pred             hhhhccCCCCCCHHHHHHHcCCHHHHHH---HHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCccc-CC
Q 011183           20 SVVNEVNELGETALFTAADKGHIEVVNE---LLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQT-TG   95 (491)
Q Consensus        20 ~~l~~~~~~g~T~Lh~Aa~~g~~~~v~~---Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~-~~   95 (491)
                      ..++.++.+|.||||+||+.|+.+++++   |++.+++  ++..|.+|.||||+||..||.++|++|+++|+++... .+
T Consensus        81 ~~~~~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~--in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~  158 (346)
T d2ajaa1          81 SDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEI--VKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQ  158 (346)
T ss_dssp             HHHHHHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSS--CC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHS
T ss_pred             hHHHhccCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCc--ccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccc
Confidence            3456778899999999999999887776   6676654  6778999999999999999999999999999987432 23


Q ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhcCCCc--ccccCCCCCcHHHHHHHcCCHHHHHHHHhCCccccc------ccCCCCC
Q 011183           96 PSNATPLVSAATRGHTAVVNELLSKDGGL--LEISRSNGKNALHFAARQGHVDVVKALLSKDPQLAR------RTDKKGQ  167 (491)
Q Consensus        96 ~~g~tpL~~A~~~g~~~~v~~LL~~~~~~--~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~------~~d~~g~  167 (491)
                      .+|.||||+|+..||.+++++|++.++..  .+..+.+|.||+|.|+.+|+.+++++|++.+++...      .....+.
T Consensus       159 ~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~  238 (346)
T d2ajaa1         159 AENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYV  238 (346)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHHHHHHHHCTTTTTTTTH
T ss_pred             cCCCChhHHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHHHHHHHHhCCCCcchHHHHHHHcCcHhh
Confidence            46899999999999999999999985432  234455678888999999999999999999876521      1122233


Q ss_pred             CHHHHHHhCCCHHHHHHHHhcCccc-ccCCC-------CCCChHHHHHHHcCcHHHHHHHhcCCCC----CcccccCCCC
Q 011183          168 TALHMAVKGQSCEVVKLLLEADAAI-VMLPD-------KFGNTALHVATRKKRTEIVTELLSLPDT----NVNALTRDHK  235 (491)
Q Consensus       168 t~Lh~Aa~~~~~~iv~~Ll~~~~~~-~~~~d-------~~G~TpLh~A~~~~~~~iv~~Ll~~~g~----~~~~~d~~G~  235 (491)
                      ++++.+...+..+....+.....+. .+..+       ..+.++|+.|+..++.+++++|++....    +.+..+.+|+
T Consensus       239 ~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~ld~v~~Ll~~~~~~~~~~~~~~~~~g~  318 (346)
T d2ajaa1         239 NPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDAN  318 (346)
T ss_dssp             HHHHHHHHHHHHHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCC
T ss_pred             hHHHHHhhccchHHHHHHHHhcccccHhHHhcccccccchhhhHHHHHhcCChHHHHHHHHhCcChhhhcccccCCCCCC
Confidence            4444444433333333332222110 11111       1234788888888889999999874332    2334556788


Q ss_pred             CHHHHHhhCCCchhhHHHHHHHHHc
Q 011183          236 TALDIAEGLPSSEEASEIKDCLARC  260 (491)
Q Consensus       236 t~L~~A~~~~~~~~~~~i~~~L~~~  260 (491)
                      ||||+|++.++.+    ++++|+..
T Consensus       319 T~LhlA~~~Gn~e----~v~lLL~~  339 (346)
T d2ajaa1         319 ELLRLALRLGNQG----ACALLLSI  339 (346)
T ss_dssp             HHHHHHHHHTCTT----HHHHHTTS
T ss_pred             cHHHHHHHcCcHH----HHHHHhCC
Confidence            9999999888766    56666554

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=2e-25  Score=203.13  Aligned_cols=205  Identities=20%  Similarity=0.221  Sum_probs=179.3

Q ss_pred             hhHHHHHh---hchhhhhccCCCCCCHHHHHHHcCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHh
Q 011183            9 EFDTEVAE---IRSSVVNEVNELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLD   85 (491)
Q Consensus         9 ~~~~~~~~---~~~~~l~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~   85 (491)
                      +.+..+++   ..+.++|.+|.+|+||||+|+..|+.++++.|++++++  .+..+..|.++++.|...++.++++.+..
T Consensus        17 ~~v~~Ll~~~~~~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~--~~~~~~~~~~~~~~a~~~~~~~~~~~~~~   94 (228)
T d1k1aa_          17 PAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGAS--PMALDRHGQTAAHLACEHRSPTCLRALLD   94 (228)
T ss_dssp             HHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC--TTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCCCCccCCCCCccceehhccccccccccccccccc--ccccccccccccccccccccccchhhhhh
Confidence            44444443   46788999999999999999999999999999998876  46678889999999999999999998877


Q ss_pred             cCCC---CcccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhCCccccccc
Q 011183           86 HDPS---LSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRT  162 (491)
Q Consensus        86 ~~~~---l~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~  162 (491)
                      ....   ..........+||+.+...........|...........+..|.+||+.|+..+..++++.+++.+... +..
T Consensus        95 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~-~~~  173 (228)
T d1k1aa_          95 SAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANV-NAQ  173 (228)
T ss_dssp             HSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCB
T ss_pred             ccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhhhhhhhhhhcccc-ccc
Confidence            6432   223445667899999999999999999998877666677888999999999999999999999998876 678


Q ss_pred             CCCCCCHHHHHHhCCCHHHHHHHHhcCcccccCCCCCCChHHHHHHHcCcHHHHH
Q 011183          163 DKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVT  217 (491)
Q Consensus       163 d~~g~t~Lh~Aa~~~~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~~~~~iv~  217 (491)
                      |..|.||||+|+..|+.+++++|+++|++ ++.+|.+|+||||+|+++|+.++|+
T Consensus       174 d~~g~t~L~~A~~~g~~~~v~~Ll~~Gad-~n~~d~~G~TpL~~A~~~~~~divk  227 (228)
T d1k1aa_         174 MYSGSSALHSASGRGLLPLVRTLVRSGAD-SSLKNCHNDTPLMVARSRRVIDILR  227 (228)
T ss_dssp             CTTSCBHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCTTTTCSSHHHHHHHT
T ss_pred             cccCcchHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHhCCCccccC
Confidence            99999999999999999999999999998 8899999999999999999988874

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=3.6e-25  Score=190.84  Aligned_cols=149  Identities=28%  Similarity=0.377  Sum_probs=96.9

Q ss_pred             hHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCH
Q 011183           66 DPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHV  145 (491)
Q Consensus        66 TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~  145 (491)
                      ||||.||+.|+.+++++|+++|++..  .|..|+||||+|+..++.+++..++..... ....+..+.++++.++...+.
T Consensus         4 t~L~~Aa~~g~~~~v~~LL~~ga~~~--~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~   80 (153)
T d1awcb_           4 KKLLEAARAGQDDEVRILMANGAPFT--TDWLGTSPLHLAAQYGHFSTTEVLLRAGVS-RDARTKVDRTPLHMAASEGHA   80 (153)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHTCCCC--CCTTCCCHHHHHHHHTCHHHHHHHHTTTCC-TTCCCTTCCCHHHHHHHHTCH
T ss_pred             HHHHHHHHCCCHHHHHHHHHcCCCcc--cccCCCcccccccccccccccccccccccc-ccccccccccccccccccccc
Confidence            66666666666666666666666542  456666666666666666666666655332 334455566666666666666


Q ss_pred             HHHHHHHhCCcccccccCCCCCCHHHHHHhCCCHHHHHHHHhcCcccccCCCCCCChHHHHHHHcCcHHHHHHH
Q 011183          146 DVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTEL  219 (491)
Q Consensus       146 ~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~~~~~iv~~L  219 (491)
                      ++++.+..++.+. ..+|.+|+||||+|+..|+.+++++|++.|++ ++.+|.+|.||||+|+.+|+.+++++|
T Consensus        81 ~~~~~l~~~~~~~-~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad-~~~~d~~g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_          81 NIVEVLLKHGADV-NAKDMLKMTALHWATEHNHQEVVELLIKYGAD-VHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHHHHTTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             eeeecccccCCcc-ccccccCchHHHhhhhcchhheeeeccccccC-CcccCCCCCCHHHHHHHcCCHHHHHhC
Confidence            6666666666655 45566777777777777777777777777766 566677777777777777777776654

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=5.8e-25  Score=190.50  Aligned_cols=150  Identities=27%  Similarity=0.358  Sum_probs=85.1

Q ss_pred             HHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHH
Q 011183           67 PLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVD  146 (491)
Q Consensus        67 pLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~  146 (491)
                      .||.||..|+.++|+.|+++++...+..|..|+||||+|+ .|+.+++++|++. +.+++..+..|.+|++.++..++.+
T Consensus         5 ~L~~Aa~~g~~~~vk~lL~~~~~~~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~-~~~~~~~~~~~~~~l~~~~~~~~~~   82 (156)
T d1bd8a_           5 RLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQ-GASPNVQDTSGTSPVHDAARTGFLD   82 (156)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHHSC-TTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             HHHHHHHcCCHHHHHHHHHhCCCCCCccCCCCCccccccc-ccccccccccccc-ccccccccccccccccccccccccc
Confidence            3555555555555555555433223455555555555554 3555555555554 2334555555566666666666666


Q ss_pred             HHHHHHhCCcccccccCCCCCCHHHHHHhCCCHHHHHHHHhcCcccccCCCCCCChHHHHHHHcCcHHHHHHHhc
Q 011183          147 VVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLS  221 (491)
Q Consensus       147 iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~~~~~iv~~Ll~  221 (491)
                      +++.++++++++ +.+|..|.||||+|++.|+.+++++|+ .+++ ++.+|.+|+||||+|++.|+.+++++|++
T Consensus        83 ~~~~~l~~~~~~-n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~-~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~  154 (156)
T d1bd8a_          83 TLKVLVEHGADV-NVPDGTGALPIHLAVQEGHTAVVSFLA-AESD-LHRRDARGLTPLELALQRGAQDLVDILQG  154 (156)
T ss_dssp             HHHHHHHTTCCS-CCCCTTSCCHHHHHHHHTCHHHHHHHH-TTSC-TTCCCTTSCCHHHHHHHSCCHHHHHHHHT
T ss_pred             cccccccccccc-ccccCCCCeeecccccccccccccccc-cccc-ccccCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            666666665554 445566666666666666666666554 3444 45566666666666666666666666654

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.92  E-value=8.6e-25  Score=188.42  Aligned_cols=150  Identities=28%  Similarity=0.397  Sum_probs=137.6

Q ss_pred             CCHHHHHHHcCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcC
Q 011183           30 ETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRG  109 (491)
Q Consensus        30 ~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~~g  109 (491)
                      .||||.||+.|+.++|+.||++|++.  . .|..|.||||+|+..++.++++.++...... ...+..+.++++.++...
T Consensus         3 ~t~L~~Aa~~g~~~~v~~LL~~ga~~--~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~   78 (153)
T d1awcb_           3 GKKLLEAARAGQDDEVRILMANGAPF--T-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR-DARTKVDRTPLHMAASEG   78 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCC--C-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHHT
T ss_pred             CHHHHHHHHCCCHHHHHHHHHcCCCc--c-cccCCCccccccccccccccccccccccccc-cccccccccccccccccc
Confidence            49999999999999999999998763  3 6889999999999999999999999988776 566678889999999999


Q ss_pred             CHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCCHHHHHHhCCCHHHHHHH
Q 011183          110 HTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLL  185 (491)
Q Consensus       110 ~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~~~~iv~~L  185 (491)
                      +.+.++.++.. +.+.+..|.+|.||||+|+..|+.+++++|++.++++ +..|.+|.||||+|+.+|+.+++++|
T Consensus        79 ~~~~~~~l~~~-~~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~-~~~d~~g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_          79 HANIVEVLLKH-GADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADV-HTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             CHHHHHHHHTT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             cceeeeccccc-CCccccccccCchHHHhhhhcchhheeeeccccccCC-cccCCCCCCHHHHHHHcCCHHHHHhC
Confidence            99999999987 4567889999999999999999999999999999987 67899999999999999999999876

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.1e-24  Score=188.75  Aligned_cols=152  Identities=27%  Similarity=0.395  Sum_probs=136.8

Q ss_pred             CHHHHHHHcCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCC
Q 011183           31 TALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGH  110 (491)
Q Consensus        31 T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~~g~  110 (491)
                      +.||.||..|+.++|+.|++.+. .+++..|..|+||||+|+ .|+.+++++|+++++++ +..+..|.+|++.++..++
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~~-~~~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~~-~~~~~~~~~~l~~~~~~~~   80 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHREL-VHPDALNRFGKTALQVMM-FGSTAIALELLKQGASP-NVQDTSGTSPVHDAARTGF   80 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTC-CCTTCCCTTSCCHHHHSC-TTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTC
T ss_pred             HHHHHHHHcCCHHHHHHHHHhCC-CCCCccCCCCCccccccc-ccccccccccccccccc-ccccccccccccccccccc
Confidence            46999999999999999998643 346888999999999987 58899999999999997 6678899999999999999


Q ss_pred             HHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCCHHHHHHhCCCHHHHHHHHhc
Q 011183          111 TAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEA  188 (491)
Q Consensus       111 ~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~~~~iv~~Ll~~  188 (491)
                      .++++.++++ +.+++..|.+|.||||+|+..|+.+++++|+ .+.++ +.+|.+|+||||+|++.|+.+++++|+++
T Consensus        81 ~~~~~~~l~~-~~~~n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~~-~~~d~~G~TpL~~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_          81 LDTLKVLVEH-GADVNVPDGTGALPIHLAVQEGHTAVVSFLA-AESDL-HRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             HHHHHHHHHT-TCCSCCCCTTSCCHHHHHHHHTCHHHHHHHH-TTSCT-TCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             cccccccccc-ccccccccCCCCeeecccccccccccccccc-ccccc-cccCCCCCCHHHHHHHcCCHHHHHHHHhh
Confidence            9999999998 4567889999999999999999999999887 56766 77899999999999999999999999875

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=2.7e-25  Score=214.18  Aligned_cols=184  Identities=17%  Similarity=0.156  Sum_probs=127.6

Q ss_pred             cccC-CCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCCH---HHHHHHHhcCCCcccccCCCC
Q 011183           57 LTRK-NRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHT---AVVNELLSKDGGLLEISRSNG  132 (491)
Q Consensus        57 l~~~-~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~~g~~---~~v~~LL~~~~~~~~~~d~~g  132 (491)
                      ++.. |.+|+||||+||..|+.++|++|+++|+++ +.+|..|+||||.||..++.   +.+..+++.........|..|
T Consensus        99 vn~~~D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~-~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~~~~~~d~~g  177 (301)
T d1sw6a_          99 LNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNR-LYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMN  177 (301)
T ss_dssp             SCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTC
T ss_pred             cCcCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CcCCcccccHHHHhhhcccchhhhhHHHHHHHHhhhhhhccccc
Confidence            4433 888999999999999999999999999998 67899999999999987752   122223322223456778999


Q ss_pred             CcHHHHHHHcCC----HH--------HHHHHHhCCcccccccCCCCCCHHHHHHhCCCHHHHHHHHh--cCcccccCCCC
Q 011183          133 KNALHFAARQGH----VD--------VVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLE--ADAAIVMLPDK  198 (491)
Q Consensus       133 ~tpLh~A~~~g~----~~--------iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~~~~iv~~Ll~--~~~~~~~~~d~  198 (491)
                      +||||.++..+.    ..        ++..+++.+..........+.++++.+...........+..  .....+|.+|.
T Consensus       178 ~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~D~  257 (301)
T d1sw6a_         178 RTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDS  257 (301)
T ss_dssp             CCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTCCCT
T ss_pred             CCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcCccCCCC
Confidence            999999886543    22        34455565555555566677777777765555444433211  11123688999


Q ss_pred             CCChHHHHHHHcCcHHHHHHHhcCCCCCcccccCCCCCHHHHHh
Q 011183          199 FGNTALHVATRKKRTEIVTELLSLPDTNVNALTRDHKTALDIAE  242 (491)
Q Consensus       199 ~G~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~d~~G~t~L~~A~  242 (491)
                      +|+||||+|++.|+.++|++|++ .|+|++.+|+.|.||||+|+
T Consensus       258 ~G~TpLh~A~~~g~~~iv~~Ll~-~GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         258 NGDTCLNIAARLGNISIVDALLD-YGADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             TSCCHHHHHHHHCCHHHHHHHHH-TTCCTTCCCTTSCCGGGGTC
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCCCCCCCCHHHHcC
Confidence            99999999999999999999999 79999999999999999986

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.90  E-value=5.7e-25  Score=211.86  Aligned_cols=182  Identities=18%  Similarity=0.181  Sum_probs=127.3

Q ss_pred             hhhhcc-CCCCCCHHHHHHHcCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcH-------HHHHHHHhcCCCCc
Q 011183           20 SVVNEV-NELGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHH-------AIVQVLLDHDPSLS   91 (491)
Q Consensus        20 ~~l~~~-~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~-------~iv~~Ll~~~~~l~   91 (491)
                      .++|.. |.+|+||||+||..|+.++|+.|++.|++  ++.+|..|+||||.||..++.       ++++++.+   . .
T Consensus        97 ~dvn~~~D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad--~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~---~-~  170 (301)
T d1sw6a_          97 LNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSN--RLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYP---C-L  170 (301)
T ss_dssp             CCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCC--TTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGG---G-G
T ss_pred             CCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCC--CCcCCcccccHHHHhhhcccchhhhhHHHHHHHHhh---h-h
Confidence            356654 89999999999999999999999999876  678899999999999987762       44555443   2 2


Q ss_pred             ccCCCCCCCHHHHHHHcCC----HH--------HHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhC--Ccc
Q 011183           92 QTTGPSNATPLVSAATRGH----TA--------VVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSK--DPQ  157 (491)
Q Consensus        92 ~~~~~~g~tpL~~A~~~g~----~~--------~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~--~~~  157 (491)
                      ...|..|+||||+++..+.    .+        ++..++.............+.++++.+........+..+...  ...
T Consensus       171 ~~~d~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (301)
T d1sw6a_         171 ILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIAN  250 (301)
T ss_dssp             GEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHH
T ss_pred             hhcccccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhc
Confidence            5568899999999986554    22        344555555555556666677777776655443333322110  011


Q ss_pred             cccccCCCCCCHHHHHHhCCCHHHHHHHHhcCcccccCCCCCCChHHHHHH
Q 011183          158 LARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVAT  208 (491)
Q Consensus       158 ~~~~~d~~g~t~Lh~Aa~~~~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~  208 (491)
                      ..+.+|.+|+||||+|+++|+.+++++|++.|++ ++.+|..|.||||+|+
T Consensus       251 ~in~~D~~G~TpLh~A~~~g~~~iv~~Ll~~GAd-~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         251 MLNAQDSNGDTCLNIAARLGNISIVDALLDYGAD-PFIANKSGLRPVDFGA  300 (301)
T ss_dssp             TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCC-TTCCCTTSCCGGGGTC
T ss_pred             CccCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHcC
Confidence            2367899999999999999999999999999999 8999999999999985

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.90  E-value=3.2e-25  Score=217.78  Aligned_cols=259  Identities=17%  Similarity=0.125  Sum_probs=177.6

Q ss_pred             CCCHHHHHHHcCCHHHHHHHHhccCcc---------ccccCCCCCChHHHHHHHcCcHHHHHH---HHhcCCCCcccCCC
Q 011183           29 GETALFTAADKGHIEVVNELLKYSTKE---------GLTRKNRSGFDPLHIAAVQGHHAIVQV---LLDHDPSLSQTTGP   96 (491)
Q Consensus        29 g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~---------~l~~~~~~g~TpLh~A~~~g~~~iv~~---Ll~~~~~l~~~~~~   96 (491)
                      +.++++.+...+..++.+.+...+...         .+..++..|.||||+|+.+|+.+++++   |++.|+++ +..|.
T Consensus        46 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~i-n~~~~  124 (346)
T d2ajaa1          46 EAIHIFLPGTKNMEQVRQLLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIV-KVIQA  124 (346)
T ss_dssp             HHHHHCCCCSSHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSC-C--CH
T ss_pred             hHHHHHHHhhccHHHHHHHHHHcchhhccchhhhhhHHHhccCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCcc-cccCC
Confidence            334444444455566666665443221         134567789999999999999887765   78888887 67888


Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHhcCCCcccccC--CCCCcHHHHHHHcCCHHHHHHHHhCCcccc--cccCCCCCCHHHH
Q 011183           97 SNATPLVSAATRGHTAVVNELLSKDGGLLEISR--SNGKNALHFAARQGHVDVVKALLSKDPQLA--RRTDKKGQTALHM  172 (491)
Q Consensus        97 ~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~d--~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~--~~~d~~g~t~Lh~  172 (491)
                      +|+||||+||..||.+++++|++.+ .+.+..+  .+|.||||+|+..|+.+++++|++.++...  +..+.+|.||+|.
T Consensus       125 ~g~taL~~Aa~~G~~~~v~~Ll~~g-~~~~~~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~  203 (346)
T d2ajaa1         125 ENYQAFRLAAENGHLHVLNRLCELA-PTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWA  203 (346)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHSC-TTTHHHHHSHHHHHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHCCCHHHHHHHHHcC-CCccccccccCCCChhHHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhH
Confidence            9999999999999999999999984 4455443  469999999999999999999999987652  3344567788889


Q ss_pred             HHhCCCHHHHHHHHhcCccccc------CCCCCCChHHHHHHHcCcHHHHHHHhcC-CCCCcccccC-------CCCCHH
Q 011183          173 AVKGQSCEVVKLLLEADAAIVM------LPDKFGNTALHVATRKKRTEIVTELLSL-PDTNVNALTR-------DHKTAL  238 (491)
Q Consensus       173 Aa~~~~~~iv~~Ll~~~~~~~~------~~d~~G~TpLh~A~~~~~~~iv~~Ll~~-~g~~~~~~d~-------~G~t~L  238 (491)
                      |+++|+.+++++|++.|++...      .....+.++++.+...+..+....+... .....+..+.       .+.+++
T Consensus       204 A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~l  283 (346)
T d2ajaa1         204 AVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNL  283 (346)
T ss_dssp             HSTTCCHHHHHHHTTSHHHHHHHHHCTTTTTTTTHHHHHHHHHHHHHHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHH
T ss_pred             HhhcCHHHHHHHHHhCCCCcchHHHHHHHcCcHhhhHHHHHhhccchHHHHHHHHhcccccHhHHhcccccccchhhhHH
Confidence            9999999999999999876311      1233445777777766666655444431 1122222222       234567


Q ss_pred             HHHhhCCCchhhHHHHHHHHHcCcc-----ccccCCCchHHHHHHHHHhhhhhhhhhHHh
Q 011183          239 DIAEGLPSSEEASEIKDCLARCGAV-----RANELNQPRDELRKTVTQIKKDVHTQLEQT  293 (491)
Q Consensus       239 ~~A~~~~~~~~~~~i~~~L~~~ga~-----~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~  293 (491)
                      +.+...+    ..+++++|.+.+..     .......+.+++..+....+.++.+.|-..
T Consensus       284 ~~a~~~~----~ld~v~~Ll~~~~~~~~~~~~~~~~~g~T~LhlA~~~Gn~e~v~lLL~~  339 (346)
T d2ajaa1         284 IRRNDEV----LLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSI  339 (346)
T ss_dssp             HHHCCGG----GHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHHHHTCTTHHHHHTTS
T ss_pred             HHHhcCC----hHHHHHHHHhCcChhhhcccccCCCCCCcHHHHHHHcCcHHHHHHHhCC
Confidence            7766543    34567777776542     233344567899999998888888877543

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=8.4e-23  Score=169.79  Aligned_cols=121  Identities=26%  Similarity=0.381  Sum_probs=92.7

Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCC-CCHHHHHH
Q 011183           28 LGETALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSN-ATPLVSAA  106 (491)
Q Consensus        28 ~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g-~tpL~~A~  106 (491)
                      .+.++||+|+..|+.++|++|+++|.+  ++..|..|.||||.|+ .|+.+++++|+++|+++ +..+..+ .||||+|+
T Consensus         2 p~~~~L~~Aa~~G~~~~v~~Ll~~gad--~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~L~~A~   77 (125)
T d1bi7b_           2 PSADWLATAAARGRVEEVRALLEAGAN--PNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEP-NCADPATLTRPVHDAA   77 (125)
T ss_dssp             CSTTHHHHHHHHTCHHHHHHHHTTTCC--TTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCC-CCCCTTTCCCHHHHHH
T ss_pred             CChhHHHHHHHCCCHHHHHHHHHcCCc--cccccccccccccccc-ccccccccccccccccc-cccccccccccccccc
Confidence            356788888888888888888887765  5667778888888664 68888888888888877 3444444 46888888


Q ss_pred             HcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHh
Q 011183          107 TRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLS  153 (491)
Q Consensus       107 ~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~  153 (491)
                      ..|+.+++++|++. +.+++..|.+|+||||+|++.|+.+++++|+.
T Consensus        78 ~~g~~~~v~~Ll~~-ga~~~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          78 REGFLDTLVVLHRA-GARLDVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             HHTCHHHHHHHHHH-TCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             cccccccccccccc-ccccccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            88888888888876 56677778888888888888888888887764

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=2.7e-22  Score=166.68  Aligned_cols=118  Identities=21%  Similarity=0.275  Sum_probs=60.4

Q ss_pred             CHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhCCcccccccCCCCC-CHHHHHHhCCC
Q 011183          100 TPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQ-TALHMAVKGQS  178 (491)
Q Consensus       100 tpL~~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~-t~Lh~Aa~~~~  178 (491)
                      ++||+|+..|+.+++++|+++ +.+++..|.+|.||+|.|+ .|+.+++++|+++++++ +..|..|. ||||+|++.|+
T Consensus         5 ~~L~~Aa~~G~~~~v~~Ll~~-gad~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~L~~A~~~g~   81 (125)
T d1bi7b_           5 DWLATAAARGRVEEVRALLEA-GANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEP-NCADPATLTRPVHDAAREGF   81 (125)
T ss_dssp             THHHHHHHHTCHHHHHHHHTT-TCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCC-CCCCTTTCCCHHHHHHHHTC
T ss_pred             hHHHHHHHCCCHHHHHHHHHc-CCccccccccccccccccc-ccccccccccccccccc-cccccccccccccccccccc
Confidence            444444444444444444443 2334444444555554332 34555555555555444 33333332 45555555555


Q ss_pred             HHHHHHHHhcCcccccCCCCCCChHHHHHHHcCcHHHHHHHhc
Q 011183          179 CEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRTEIVTELLS  221 (491)
Q Consensus       179 ~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~~~~~iv~~Ll~  221 (491)
                      .+++++|+++|++ ++.+|.+|+||||+|+++|+.+++++|+.
T Consensus        82 ~~~v~~Ll~~ga~-~~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          82 LDTLVVLHRAGAR-LDVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             HHHHHHHHHHTCC-SSCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             ccccccccccccc-cccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            5555555555555 45555556666666666666666655543

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.86  E-value=1.4e-22  Score=166.70  Aligned_cols=106  Identities=28%  Similarity=0.359  Sum_probs=91.5

Q ss_pred             cHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCCHHHHHHhCCCHHHHHHHHhcCcccccCCCCCCChHHHHHHHcCcH
Q 011183          134 NALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAAIVMLPDKFGNTALHVATRKKRT  213 (491)
Q Consensus       134 tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~~~~iv~~Ll~~~~~~~~~~d~~G~TpLh~A~~~~~~  213 (491)
                      |||++|++.|+.++++.|+++|.++ +..|..|+||||+|+..|+.+++++|++.|++ ++.+|.+|+||||+|+..|+.
T Consensus         4 tpL~~A~~~g~~~~v~~Ll~~g~d~-n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~d-in~~d~~g~tpLh~A~~~~~~   81 (118)
T d1myoa_           4 KEFMWALKNGDLDEVKDYVAKGEDV-NRTLEGGRKPLHYAADCGQLEILEFLLLKGAD-INAPDKHHITPLLSAVYEGHV   81 (118)
T ss_dssp             HHHHHHHHTTCHHHHHHHHTTTCCC-CCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCT-TTCCSSSCSCHHHHHHTTTCC
T ss_pred             hHHHHHHHCCCHHHHHHHHHhhhcc-ccccccccccccccccccccccccccccccce-eeecccccccchhhhhhcCch
Confidence            7888888888888888888888876 67788888888888888888888888888888 778888888999999988888


Q ss_pred             HHHHHHhcCCCCCcccccCCCCCHHHHHh
Q 011183          214 EIVTELLSLPDTNVNALTRDHKTALDIAE  242 (491)
Q Consensus       214 ~iv~~Ll~~~g~~~~~~d~~G~t~L~~A~  242 (491)
                      +++++|++ .|+|++.+|.+|+||||+|.
T Consensus        82 ~~v~~Ll~-~Gad~~~~d~~G~t~l~~a~  109 (118)
T d1myoa_          82 SCVKLLLS-KGADKTVKGPDGLTALEATD  109 (118)
T ss_dssp             HHHHHHHT-TCCCSSSSSSSTCCCCCTCS
T ss_pred             hhhhhhhc-ccccceeeCCCCCCHHHHHh
Confidence            88888888 68888888889999888874

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.85  E-value=8.8e-23  Score=167.84  Aligned_cols=105  Identities=29%  Similarity=0.368  Sum_probs=67.3

Q ss_pred             CHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhCCcccccccCCCCCCHHHHHHhCCCH
Q 011183          100 TPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSC  179 (491)
Q Consensus       100 tpL~~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~~~  179 (491)
                      |||++|++.|+.+++++|+++ +.+++..|.+|+||||+|+..|+.+++++|+++++++ +.+|..|+||||+|+.+|+.
T Consensus         4 tpL~~A~~~g~~~~v~~Ll~~-g~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~di-n~~d~~g~tpLh~A~~~~~~   81 (118)
T d1myoa_           4 KEFMWALKNGDLDEVKDYVAK-GEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADI-NAPDKHHITPLLSAVYEGHV   81 (118)
T ss_dssp             HHHHHHHHTTCHHHHHHHHTT-TCCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTT-TCCSSSCSCHHHHHHTTTCC
T ss_pred             hHHHHHHHCCCHHHHHHHHHh-hhcccccccccccccccccccccccccccccccccee-eecccccccchhhhhhcCch
Confidence            456666666666666666654 3445555666666666666666666666666666665 55566677777777777777


Q ss_pred             HHHHHHHhcCcccccCCCCCCChHHHHH
Q 011183          180 EVVKLLLEADAAIVMLPDKFGNTALHVA  207 (491)
Q Consensus       180 ~iv~~Ll~~~~~~~~~~d~~G~TpLh~A  207 (491)
                      +++++|+++|++ ++.+|.+|+||||+|
T Consensus        82 ~~v~~Ll~~Gad-~~~~d~~G~t~l~~a  108 (118)
T d1myoa_          82 SCVKLLLSKGAD-KTVKGPDGLTALEAT  108 (118)
T ss_dssp             HHHHHHHTTCCC-SSSSSSSTCCCCCTC
T ss_pred             hhhhhhhccccc-ceeeCCCCCCHHHHH
Confidence            777777777666 566677777777666

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=3.4e-21  Score=161.03  Aligned_cols=119  Identities=24%  Similarity=0.240  Sum_probs=53.2

Q ss_pred             HHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHH
Q 011183           67 PLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVD  146 (491)
Q Consensus        67 pLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~  146 (491)
                      +|+.|+..|+.++++.|+++|+++ +.+|.+|+||||+|+..|+.+++++|++. +.+.+..|.+|+||||+|+..|+.+
T Consensus         4 lL~~A~~~G~~~~v~~Ll~~g~d~-n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~-g~~~~~~d~~g~tpLh~A~~~g~~~   81 (130)
T d1ycsb1           4 LLLDSSLEGEFDLVQRIIYEVDDP-SLPNDEGITALHNAVCAGHTEIVKFLVQF-GVNVNAADSDGWTPLHCAASCNNVQ   81 (130)
T ss_dssp             HHHHHHHHTCHHHHHHHTSTTSSC-CCCCTTSCCHHHHHHHHTCHHHHHHHHHH-TCCTTCCCTTCCCHHHHHHHTTCHH
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCc-ccccccccccccccccccccccccccccc-ccccccccccCcccccccchhhHHH
Confidence            444444444444444444444443 33444444444444444444444444443 2334444444444444444444444


Q ss_pred             HHHHHHhCCcccccccCCCCCCHHHHH--HhCCCHHHHHHHHh
Q 011183          147 VVKALLSKDPQLARRTDKKGQTALHMA--VKGQSCEVVKLLLE  187 (491)
Q Consensus       147 iv~~Ll~~~~~~~~~~d~~g~t~Lh~A--a~~~~~~iv~~Ll~  187 (491)
                      ++++|+++|+++....+..|+|+++++  ++.|+.+++++|+.
T Consensus        82 ~v~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~  124 (130)
T d1ycsb1          82 VCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYG  124 (130)
T ss_dssp             HHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHH
T ss_pred             HHHHHHHcCCCcccccCCCCCCHHHHHHHHHcChHHHHHHHHh
Confidence            444444444444222222344444333  23344445554443

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=5.2e-21  Score=159.90  Aligned_cols=121  Identities=21%  Similarity=0.288  Sum_probs=107.0

Q ss_pred             CHHHHHHHcCCHHHHHHHHhccCccccccCCCCCChHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCCHHHHHHHcCC
Q 011183           31 TALFTAADKGHIEVVNELLKYSTKEGLTRKNRSGFDPLHIAAVQGHHAIVQVLLDHDPSLSQTTGPSNATPLVSAATRGH  110 (491)
Q Consensus        31 T~Lh~Aa~~g~~~~v~~Ll~~~~~~~l~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~~g~  110 (491)
                      ++|+.|+..|+.++|+.|++.|.+  ++.+|.+|+||||+|+..|+.+++++|++.++++ +..|.+|+||||+|+..|+
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d--~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~-~~~d~~g~tpLh~A~~~g~   79 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDD--PSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNV-NAADSDGWTPLHCAASCNN   79 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSS--CCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHTTC
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCC--cccccccccccccccccccccccccccccccccc-ccccccCcccccccchhhH
Confidence            579999999999999999999876  6788999999999999999999999999999997 7889999999999999999


Q ss_pred             HHHHHHHHhcCCCcccccC-CCCCcHHHHH--HHcCCHHHHHHHHhCC
Q 011183          111 TAVVNELLSKDGGLLEISR-SNGKNALHFA--ARQGHVDVVKALLSKD  155 (491)
Q Consensus       111 ~~~v~~LL~~~~~~~~~~d-~~g~tpLh~A--~~~g~~~iv~~Ll~~~  155 (491)
                      .+++++|+++ +++++..+ .+|.||++.+  +..|+.+++++|++..
T Consensus        80 ~~~v~~Ll~~-ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~~  126 (130)
T d1ycsb1          80 VQVCKFLVES-GAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQ  126 (130)
T ss_dssp             HHHHHHHHHT-TCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHH
T ss_pred             HHHHHHHHHc-CCCcccccCCCCCCHHHHHHHHHcChHHHHHHHHhHH
Confidence            9999999998 45555444 4588887765  5779999999998753

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.81  E-value=1.6e-19  Score=155.06  Aligned_cols=125  Identities=18%  Similarity=0.177  Sum_probs=90.3

Q ss_pred             HHHHHHHcCCHHHHHHHHhccCccc----cccCCCCCChHHHHHHHc---CcHHHHHHHHhcCCCCcccCCCCCCCHHHH
Q 011183           32 ALFTAADKGHIEVVNELLKYSTKEG----LTRKNRSGFDPLHIAAVQ---GHHAIVQVLLDHDPSLSQTTGPSNATPLVS  104 (491)
Q Consensus        32 ~Lh~Aa~~g~~~~v~~Ll~~~~~~~----l~~~~~~g~TpLh~A~~~---g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~  104 (491)
                      .|+.|++.+++..+..++..|.+..    ....+..|+||||+|+..   |+.+++++|+++|+++ +.+|..|+||||+
T Consensus         9 ~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadi-n~~d~~g~TpLh~   87 (154)
T d1dcqa1           9 SLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNL-DKQTGKGSTALHY   87 (154)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCT-TCCCTTCCCHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCCh-hhhhhhhcccccc
Confidence            4567888888888888887665421    223356677888888864   5677888888887776 5677778888888


Q ss_pred             HHHcCCHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHhCCccc
Q 011183          105 AATRGHTAVVNELLSKDGGLLEISRSNGKNALHFAARQGHVDVVKALLSKDPQL  158 (491)
Q Consensus       105 A~~~g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~  158 (491)
                      |+..|+.+++++|+++ +.+++..|.+|+||||+|++.|+.+++++|++.+...
T Consensus        88 A~~~~~~~~v~~Ll~~-gad~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~~~  140 (154)
T d1dcqa1          88 CCLTDNAECLKLLLRG-KASIEIANESGETPLDIAKRLKHEHCEELLTQALSGR  140 (154)
T ss_dssp             HHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred             cccccccccccccccc-CccccccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCC
Confidence            8888888888877776 5566777777777777777777777777777765433

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.80  E-value=4.1e-19  Score=152.42  Aligned_cols=123  Identities=20%  Similarity=0.232  Sum_probs=76.6

Q ss_pred             HHHHHHHcCcHHHHHHHHhcCCCCccc-----CCCCCCCHHHHHHHc---CCHHHHHHHHhcCCCcccccCCCCCcHHHH
Q 011183           67 PLHIAAVQGHHAIVQVLLDHDPSLSQT-----TGPSNATPLVSAATR---GHTAVVNELLSKDGGLLEISRSNGKNALHF  138 (491)
Q Consensus        67 pLh~A~~~g~~~iv~~Ll~~~~~l~~~-----~~~~g~tpL~~A~~~---g~~~~v~~LL~~~~~~~~~~d~~g~tpLh~  138 (491)
                      .|+.|++.++...+..++..|.++...     .+..|+||||+|+..   |+.+++++|++. +.+++..|.+|+||||+
T Consensus         9 ~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~-gadin~~d~~g~TpLh~   87 (154)
T d1dcqa1           9 SLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQN-SGNLDKQTGKGSTALHY   87 (154)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHH-CSCTTCCCTTCCCHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHc-CCChhhhhhhhcccccc
Confidence            455778888888888888877665321     244566666666643   455666666655 34455666666666666


Q ss_pred             HHHcCCHHHHHHHHhCCcccccccCCCCCCHHHHHHhCCCHHHHHHHHhcCcc
Q 011183          139 AARQGHVDVVKALLSKDPQLARRTDKKGQTALHMAVKGQSCEVVKLLLEADAA  191 (491)
Q Consensus       139 A~~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~Aa~~~~~~iv~~Ll~~~~~  191 (491)
                      |+..|+.+++++|+++++++ +.+|.+|+||||+|++.|+.+++++|++.++.
T Consensus        88 A~~~~~~~~v~~Ll~~gad~-~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~~  139 (154)
T d1dcqa1          88 CCLTDNAECLKLLLRGKASI-EIANESGETPLDIAKRLKHEHCEELLTQALSG  139 (154)
T ss_dssp             HHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             ccccccccccccccccCccc-cccCCCCCCHHHHHHHcCCHHHHHHHHHhCCC
Confidence            66666666666666666655 45566666666666666666666666665543