Citrus Sinensis ID: 011190

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-
MGTKIRAVPLSLFLSSLLFSLVASVSNDGLVRIGLKKMKLDPNNRLAARLESEHGEALRASVKKYGFPNNLRDSEDTDIVALKNYMDAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHSKYKSSQSSTYKKNGESASIQYGTGAIAGFFSYDSVKVGDLVVKDQEFIEATREPGVTFMVAKFDGILGLGFQEISVGNAVPVWYNMVKQGLIQDPVFSFWLNRNQQEDEGGEIVFGGVDPNHYKGKHTYVPVTQKGYWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVITMINHAIGASGVVSQQCKAVVEQYGQTILDLLLFEAHPKKICSQMGLCTFDGKRGVSMGIESVVDESNDKSSGVLNNAMCSACEMAVVWMQNQLQQNQTQENILQYVNELCDRMPSPMGESAVDCGKLSSMPIVSFTIGGKVFDLSPEEYILKVGEGPEAQCISGFTAMDVPPPRGPLWYSRI
ccccccHHHHHHHHHHHHHHHHHHHccccEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccEEEcccccccEEEEEEEEccccccEEEEcccccccccccccccccccccccccccccccccccccccEEEEEEEccEEEEEEEEEEEEEEccEEEccEEEEEEEEccccccccccccEEEccccccccccccccHHHHHHHcccccccEEEEEEccccccccccEEEEcccccccccccccEEEccccEEEEEEEccEEEccEEEEEccccEEEEEccccccccccHHHHHHHHHHHccccccccccEEEEEcccccccccEEccccccccccccccEEEccccccccccccccccccccccccccccccccccEEEEEcccccHHcccHHHHHHHHHHHHcccccccccEEEEcccccccccEEEEEccEEEEEcccccEEEEccccccEEEEccccccccccccccccccc
cccHHHHHHHHHHHHHHHHHHHHHHccccEEEEccccccHHHHHHHHcccHHHHHHHccccHHcccccccccccEccEEEEEEEEcccEEEEEEEEccccEEEEEEEEcccccEEEEEccccccHHHHccccEcHHHccccEEEEEEEEEEccccEEEEEEEEEEEEEccEEEEEEEEEEEEEEcHHHHccccccEEEEcccccccccccccHHHHHHHcccccccEEEEEEcccccccccEEEEEccccHHHEEEEEEEEEEEEEccEEEEEccEEEccEEcccccccEEEEEccccccEEEcHHHHHHHHHHccccccccccEEEEEcccccccccEEEEEEccccccccccEEccccccccccEEEEEEEccccccccccccEEcccccEEEEEccccccccccHHHHHHHHHHHHccEEcccccEEEcHHHHHHcccEEEEEccEEEEEcccccEEEEEEccEEEEEEcEEEccccccccccEEEcc
MGTKIRAVPLSLFLSSLLFSLVASVSNDglvriglkkmkldpnnRLAARLESEHGEALRASVKkygfpnnlrdsedtDIVALKNYMdaqyygeigigtppqkFTVIFdtgssnlwvpstncyfsvacyfhskykssqsstykkngesasiqygtgaiagffsydsvkvgdlvvkdqefieatrepgvTFMVAKFDGILGLGFQEISVGNAVPVWYNMVKQGLIQDPVFSFWLNrnqqedeggeivfggvdpnhykgkhtyvpvtqkgywqfnmgdvliggkptgycaggcsaiadsgtsllagpTTVITMINHAIGASGVVSQQCKAVVEQYGQTILDLLLFEahpkkicsqmglctfdgkrgvsmGIESvvdesndkssgvlnNAMCSACEMAVVWMQNQLQQNQTQENILQYVNELCdrmpspmgesavdcgklssmpivsftiggkvfdlspeEYILKvgegpeaqcisgftamdvppprgplwysri
MGTKIRAVPLSLFLSSLLFSLVASVSNDGLVRiglkkmkldpnNRLAARLESEHGEALRAsvkkygfpnnlrdSEDTDIVALKNYMDAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHSKYKSSQSSTYKKNGESASIQYGTGAIAGFFSYDSVKVGDLVVKDQEFIeatrepgvtFMVAKFDGILGLGFQEISVGNAVPVWYNMVKQGLIQDPVFSFWLNRNQQEDEGGEIVFGGVDPNHYKGKHTYVPVTQKGYWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVITMINHAIGASGVVSQQCKAVVEQYGQTILDLLLFEAHPKKICSQMGLCTFDGKRGVSMGIESVVDESNDKSSGVLNNAMCSACEMAVVWMQNQLQQNQTQENILQYVNELCDRMPSPMGESAVDCGKLSSMPIVSFTIGGKVFDLSPEEYILKVGEGPEAQCISgftamdvppprgplwysri
MGTKIRAVPlslflssllfslvasvsNDGLVRIGLKKMKLDPNNRLAARLESEHGEALRASVKKYGFPNNLRDSEDTDIVALKNYMDAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHskykssqsstykkNGESASIQYGTGAIAGFFSYDSVKVGDLVVKDQEFIEATREPGVTFMVAKFDGILGLGFQEISVGNAVPVWYNMVKQGLIQDPVFSFWLNRNQQEDEGGEIVFGGVDPNHYKGKHTYVPVTQKGYWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVITMINHAIGASGVVSQQCKAVVEQYGQTILDLLLFEAHPKKICSQMGLCTFDGKRGVSMGIESVVDESNDKSSGVLNNAMCSACEMAVVWMqnqlqqnqtqenilqYVNELCDRMPSPMGESAVDCGKLSSMPIVSFTIGGKVFDLSPEEYILKVGEGPEAQCISGFTAMDVPPPRGPLWYSRI
****IRAVPLSLFLSSLLFSLVASVSNDGLVRIGLKKMK*************************YGFP**L***EDTDIVALKNYMDAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHSKY***************SIQYGTGAIAGFFSYDSVKVGDLVVKDQEFIEATREPGVTFMVAKFDGILGLGFQEISVGNAVPVWYNMVKQGLIQDPVFSFWLNRNQQEDEGGEIVFGGVDPNHYKGKHTYVPVTQKGYWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVITMINHAIGASGVVSQQCKAVVEQYGQTILDLLLFEAHPKKICSQMGLCTFDGKRGVSMGIESV*********GVLNNAMCSACEMAVVWMQNQLQQNQTQENILQYVNELCDR********AVDCGKLSSMPIVSFTIGGKVFDLSPEEYILKVGEGPEAQCISGFTAMD*************
******A*PLSLFLSSLLFSLVASVSNDGLVRIGLKK*******************ALRAS******************VALKNYMDAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHSKYKSSQSSTYKKNGESASIQYGTGAIAGFFSYDSVKVGDLVVKDQEFIEATREPGVTFMVAKFDGILGLGFQEISVGNAVPVWYNMVKQGLIQDPVFSFWLNRNQ*EDEGGEIVFGGVDPNHYKGKHTYVPVTQKGYWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVITMINHAIGASGVVSQQCKAVVEQYGQTILDLLLFEAHPKKICSQMGLCTFDGKRGVSMGIESVVDESNDKSSGVLNNAMCSACEMAVVWMQNQLQQNQTQENILQYVNELCDRMPSPMGESAVDCGKLSSMPIVSFTIGGKVFDLSPEEYILKVGEGPEAQCISGFTAMDVPPPRGPLWYSRI
MGTKIRAVPLSLFLSSLLFSLVASVSNDGLVRIGLKKMKLDPNNRLAARLESEHGEALRASVKKYGFPNNLRDSEDTDIVALKNYMDAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHSKY************ESASIQYGTGAIAGFFSYDSVKVGDLVVKDQEFIEATREPGVTFMVAKFDGILGLGFQEISVGNAVPVWYNMVKQGLIQDPVFSFWLNRNQQEDEGGEIVFGGVDPNHYKGKHTYVPVTQKGYWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVITMINHAIGASGVVSQQCKAVVEQYGQTILDLLLFEAHPKKICSQMGLCTFDGKRGVSMGIESVVDESNDKSSGVLNNAMCSACEMAVVWMQNQLQQNQTQENILQYVNELCDRMPSPMGESAVDCGKLSSMPIVSFTIGGKVFDLSPEEYILKVGEGPEAQCISGFTAMDVPPPRGPLWYSRI
*GTKIRAVPLSLFLSSLLFSLVASVSNDGLVRIGLKKMKLDPNNRLAARLESEHGEALRASVKKYGFPNNLRDSEDTDIVALKNYMDAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHSKYKSSQSSTYKKNGESASIQYGTGAIAGFFSYDSVKVGDLVVKDQEFIEATREPGVTFMVAKFDGILGLGFQEISVGNAVPVWYNMVKQGLIQDPVFSFWLNRNQQEDEGGEIVFGGVDPNHYKGKHTYVPVTQKGYWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVITMINHAIGASGVVSQQCKAVVEQYGQTILDLLLFEAHPKKICSQMGLCTFDGKRGVSMGIESVVDESNDKSSGVLNNAMCSACEMAVVWMQNQLQQNQTQENILQYVNELCDRMPSPMGESAVDCGKLSSMPIVSFTIGGKVFDLSPEEYILKVGEGPEAQCISGFTAMDVPPPRGPLWYSRI
iiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MGTKIRAVPLSLFLSSLLFSLVASVSNDGLVRIGLKKMKLDPNNRLAARLESEHGEALRASVKKYGFPNNLRDSEDTDIVALKNYMDAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHSKYKSSQSSTYKKNGESASIQYGTGAIAGFFSYDSVKVGDLVVKDQEFIEATREPGVTFMVAKFDGILGLGFQEISVGNAVPVWYNMVKQGLIQDPVFSFWLNRNQQEDEGGEIVFGGVDPNHYKGKHTYVPVTQKGYWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVITMINHAIGASGVVSQQCKAVVEQYGQTILDLLLFEAHPKKICSQMGLCTFDGKRGVSMGIESVVDESNDKSSGVLNNAMCSACEMAVVWMQNQLQQNQTQENILQYVNELCDRMPSPMGESAVDCGKLSSMPIVSFTIGGKVFDLSPEEYILKVGEGPEAQCISGFTAMDVPPPRGPLWYSRI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query491 2.2.26 [Sep-21-2011]
O65390506 Aspartic proteinase A1 OS yes no 0.965 0.936 0.761 0.0
Q8VYL3513 Aspartic proteinase A2 OS no no 0.987 0.945 0.737 0.0
O04057513 Aspartic proteinase OS=Cu N/A no 0.977 0.935 0.786 0.0
Q42456509 Aspartic proteinase oryza yes no 0.930 0.897 0.745 0.0
Q9XEC4508 Aspartic proteinase A3 OS no no 0.975 0.942 0.674 0.0
P42210508 Phytepsin OS=Hordeum vulg N/A no 0.938 0.907 0.730 0.0
P40782473 Cyprosin (Fragment) OS=Cy N/A no 0.908 0.942 0.704 0.0
Q9XFX4506 Procardosin-B OS=Cynara c N/A no 0.973 0.944 0.614 1e-173
Q9XFX3504 Procardosin-A OS=Cynara c N/A no 0.971 0.946 0.616 1e-171
P42211496 Aspartic proteinase OS=Or no no 0.930 0.921 0.586 1e-170
>sp|O65390|APA1_ARATH Aspartic proteinase A1 OS=Arabidopsis thaliana GN=APA1 PE=1 SV=1 Back     alignment and function desciption
 Score =  775 bits (2000), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/482 (76%), Positives = 414/482 (85%), Gaps = 8/482 (1%)

Query: 6   RAVPLSLFLSSLLFSLVASVSNDGLVRIGLKKMKLDPNNRLAARLESEHGEALRASVKKY 65
           R V +SL +S LL     +  NDG  R+GLKK+KLD  NRLAAR+ES+  + LRA     
Sbjct: 6   RTVAVSLIVSFLLCFSAFAERNDGTFRVGLKKLKLDSKNRLAARVESKQEKPLRAY---- 61

Query: 66  GFPNNLRDSEDTDIVALKNYMDAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSV 125
                L DS D D+V LKNY+DAQYYGEI IGTPPQKFTV+FDTGSSNLWVPS+ CYFS+
Sbjct: 62  ----RLGDSGDADVVVLKNYLDAQYYGEIAIGTPPQKFTVVFDTGSSNLWVPSSKCYFSL 117

Query: 126 ACYFHSKYKSSQSSTYKKNGESASIQYGTGAIAGFFSYDSVKVGDLVVKDQEFIEATREP 185
           AC  H KYKSS+SSTY+KNG++A+I YGTGAIAGFFS D+V VGDLVVKDQEFIEAT+EP
Sbjct: 118 ACLLHPKYKSSRSSTYEKNGKAAAIHYGTGAIAGFFSNDAVTVGDLVVKDQEFIEATKEP 177

Query: 186 GVTFMVAKFDGILGLGFQEISVGNAVPVWYNMVKQGLIQDPVFSFWLNRNQQEDEGGEIV 245
           G+TF+VAKFDGILGLGFQEISVG A PVWYNM+KQGLI++PVFSFWLNRN  E+EGGE+V
Sbjct: 178 GITFVVAKFDGILGLGFQEISVGKAAPVWYNMLKQGLIKEPVFSFWLNRNADEEEGGELV 237

Query: 246 FGGVDPNHYKGKHTYVPVTQKGYWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSLLAGPT 305
           FGGVDPNH+KGKHTYVPVTQKGYWQF+MGDVLIGG PTG+C  GCSAIADSGTSLLAGPT
Sbjct: 238 FGGVDPNHFKGKHTYVPVTQKGYWQFDMGDVLIGGAPTGFCESGCSAIADSGTSLLAGPT 297

Query: 306 TVITMINHAIGASGVVSQQCKAVVEQYGQTILDLLLFEAHPKKICSQMGLCTFDGKRGVS 365
           T+ITMINHAIGA+GVVSQQCK VV+QYGQTILDLLL E  PKKICSQ+GLCTFDG RGVS
Sbjct: 298 TIITMINHAIGAAGVVSQQCKTVVDQYGQTILDLLLSETQPKKICSQIGLCTFDGTRGVS 357

Query: 366 MGIESVVDESNDKSSGVLNNAMCSACEMAVVWMQNQLQQNQTQENILQYVNELCDRMPSP 425
           MGIESVVD+ N K S  + +A CSACEMAVVW+Q+QL+QN TQE IL YVNELC+R+PSP
Sbjct: 358 MGIESVVDKENAKLSNGVGDAACSACEMAVVWIQSQLRQNMTQERILNYVNELCERLPSP 417

Query: 426 MGESAVDCGKLSSMPIVSFTIGGKVFDLSPEEYILKVGEGPEAQCISGFTAMDVPPPRGP 485
           MGESAVDC +LS+MP VS TIGGKVFDL+PEEY+LKVGEGP AQCISGF A+DV PPRGP
Sbjct: 418 MGESAVDCAQLSTMPTVSLTIGGKVFDLAPEEYVLKVGEGPVAQCISGFIALDVAPPRGP 477

Query: 486 LW 487
           LW
Sbjct: 478 LW 479
Involved in the breakdown of propeptides of storage proteins in protein-storage vacuoles (By similarity). Possesses aspartic protease activity in vitro.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 4EC: .EC: 2EC: 3EC: .EC: -
>sp|Q8VYL3|APA2_ARATH Aspartic proteinase A2 OS=Arabidopsis thaliana GN=APA2 PE=1 SV=1 Back     alignment and function description
>sp|O04057|ASPR_CUCPE Aspartic proteinase OS=Cucurbita pepo PE=2 SV=1 Back     alignment and function description
>sp|Q42456|ASPR1_ORYSJ Aspartic proteinase oryzasin-1 OS=Oryza sativa subsp. japonica GN=Os05g0567100 PE=2 SV=2 Back     alignment and function description
>sp|Q9XEC4|APA3_ARATH Aspartic proteinase A3 OS=Arabidopsis thaliana GN=APA3 PE=1 SV=1 Back     alignment and function description
>sp|P42210|ASPR_HORVU Phytepsin OS=Hordeum vulgare PE=1 SV=1 Back     alignment and function description
>sp|P40782|CYPR1_CYNCA Cyprosin (Fragment) OS=Cynara cardunculus GN=CYPRO1 PE=1 SV=2 Back     alignment and function description
>sp|Q9XFX4|CARDB_CYNCA Procardosin-B OS=Cynara cardunculus GN=cardB PE=1 SV=1 Back     alignment and function description
>sp|Q9XFX3|CARDA_CYNCA Procardosin-A OS=Cynara cardunculus GN=cardA PE=1 SV=1 Back     alignment and function description
>sp|P42211|ASPRX_ORYSJ Aspartic proteinase OS=Oryza sativa subsp. japonica GN=RAP PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query491
21616053514 aspartic proteinase [Theobroma cacao] 0.991 0.947 0.841 0.0
449454758514 PREDICTED: aspartic proteinase-like [Cuc 0.979 0.935 0.792 0.0
255554815511 Aspartic proteinase precursor, putative 0.932 0.896 0.815 0.0
224118038512 predicted protein [Populus trichocarpa] 0.987 0.947 0.761 0.0
20800441513 aspartic proteinase [Vigna unguiculata] 0.989 0.947 0.761 0.0
255578112514 Aspartic proteinase precursor, putative 0.985 0.941 0.771 0.0
224115794512 predicted protein [Populus trichocarpa] 0.987 0.947 0.757 0.0
223929912513 aspartic acid protease [Phaseolus vulgar 0.989 0.947 0.759 0.0
359483345514 PREDICTED: aspartic proteinase isoform 2 0.989 0.945 0.805 0.0
312282703506 unnamed protein product [Thellungiella h 0.975 0.946 0.761 0.0
>gi|21616053|emb|CAC86004.1| aspartic proteinase [Theobroma cacao] Back     alignment and taxonomy information
 Score =  847 bits (2189), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 410/487 (84%), Positives = 453/487 (93%)

Query: 1   MGTKIRAVPLSLFLSSLLFSLVASVSNDGLVRIGLKKMKLDPNNRLAARLESEHGEALRA 60
           MGT I+ V LSLF+SSLLFS+V+SVSNDGLVRIGLKKMKLDPNNRLAARL+S+ GEALRA
Sbjct: 1   MGTTIKVVVLSLFISSLLFSVVSSVSNDGLVRIGLKKMKLDPNNRLAARLDSKDGEALRA 60

Query: 61  SVKKYGFPNNLRDSEDTDIVALKNYMDAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTN 120
            +KKY F NNL DSE+TDIVALKNYMDAQYYGEIGIGTP QKFTVIFDTGSSNLWV ST 
Sbjct: 61  FIKKYRFRNNLGDSEETDIVALKNYMDAQYYGEIGIGTPTQKFTVIFDTGSSNLWVSSTK 120

Query: 121 CYFSVACYFHSKYKSSQSSTYKKNGESASIQYGTGAIAGFFSYDSVKVGDLVVKDQEFIE 180
           CYFSVACYFH KYK+S SSTYKK+G+ ASIQYGTGAI+GFFSYD V+VGDLVVKDQEFIE
Sbjct: 121 CYFSVACYFHEKYKASDSSTYKKDGKPASIQYGTGAISGFFSYDHVQVGDLVVKDQEFIE 180

Query: 181 ATREPGVTFMVAKFDGILGLGFQEISVGNAVPVWYNMVKQGLIQDPVFSFWLNRNQQEDE 240
           AT+EPG+TFMVAKFDGILGLGF+EISVG+AVPVWYNM+KQGLI++PVFSFWLNRN  E+ 
Sbjct: 181 ATKEPGLTFMVAKFDGILGLGFKEISVGDAVPVWYNMIKQGLIKEPVFSFWLNRNVDEEA 240

Query: 241 GGEIVFGGVDPNHYKGKHTYVPVTQKGYWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSL 300
           GGEIVFGGVDPNHYKGKHTYVPVTQKGYWQF+MGDVLI  KPTGYCAG C+AIADSGTSL
Sbjct: 241 GGEIVFGGVDPNHYKGKHTYVPVTQKGYWQFDMGDVLIADKPTGYCAGSCAAIADSGTSL 300

Query: 301 LAGPTTVITMINHAIGASGVVSQQCKAVVEQYGQTILDLLLFEAHPKKICSQMGLCTFDG 360
           LAGP+TVITMINHAIGA+GVVSQ+CKAVV+QYG+TI+DLL+ EA P+KICSQ+GLCTF+G
Sbjct: 301 LAGPSTVITMINHAIGATGVVSQECKAVVQQYGRTIIDLLIAEAQPQKICSQIGLCTFNG 360

Query: 361 KRGVSMGIESVVDESNDKSSGVLNNAMCSACEMAVVWMQNQLQQNQTQENILQYVNELCD 420
             GVS GIESVVDESN KSSGVL +AMC ACEMAVVWMQNQ++QNQTQ+ IL YVNELCD
Sbjct: 361 AHGVSTGIESVVDESNGKSSGVLRDAMCPACEMAVVWMQNQVRQNQTQDRILSYVNELCD 420

Query: 421 RMPSPMGESAVDCGKLSSMPIVSFTIGGKVFDLSPEEYILKVGEGPEAQCISGFTAMDVP 480
           R+P+PMGESAVDCG LSSMP +SFTIGGKVFDL+PEEYILKVGEG EAQCISGFTA+D+P
Sbjct: 421 RVPNPMGESAVDCGSLSSMPTISFTIGGKVFDLTPEEYILKVGEGSEAQCISGFTALDIP 480

Query: 481 PPRGPLW 487
           PPRGPLW
Sbjct: 481 PPRGPLW 487

Source: Theobroma cacao

Species: Theobroma cacao

Genus: Theobroma

Family: Malvaceae

Order: Malvales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449454758|ref|XP_004145121.1| PREDICTED: aspartic proteinase-like [Cucumis sativus] gi|449472326|ref|XP_004153558.1| PREDICTED: aspartic proteinase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|255554815|ref|XP_002518445.1| Aspartic proteinase precursor, putative [Ricinus communis] gi|223542290|gb|EEF43832.1| Aspartic proteinase precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224118038|ref|XP_002331542.1| predicted protein [Populus trichocarpa] gi|222873766|gb|EEF10897.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|20800441|gb|AAB03843.2| aspartic proteinase [Vigna unguiculata] gi|33339734|gb|AAQ14346.1| aspartic proteinase [Vigna unguiculata] Back     alignment and taxonomy information
>gi|255578112|ref|XP_002529926.1| Aspartic proteinase precursor, putative [Ricinus communis] gi|223530603|gb|EEF32480.1| Aspartic proteinase precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224115794|ref|XP_002317126.1| predicted protein [Populus trichocarpa] gi|222860191|gb|EEE97738.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|223929912|gb|ACN24614.1| aspartic acid protease [Phaseolus vulgaris] Back     alignment and taxonomy information
>gi|359483345|ref|XP_003632941.1| PREDICTED: aspartic proteinase isoform 2 [Vitis vinifera] gi|359483347|ref|XP_002262915.2| PREDICTED: aspartic proteinase isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|312282703|dbj|BAJ34217.1| unnamed protein product [Thellungiella halophila] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query491
UNIPROTKB|B9RXH6511 RCOM_0903730 "Aspartic protein 0.985 0.947 0.735 1.6e-198
TAIR|locus:2008940506 APA1 "aspartic proteinase A1" 0.922 0.895 0.739 2.7e-187
TAIR|locus:2018037513 AT1G62290 [Arabidopsis thalian 0.987 0.945 0.682 1.2e-184
TAIR|locus:2137189508 AT4G04460 [Arabidopsis thalian 0.920 0.889 0.660 2.2e-169
FB|FBgn0029093392 cathD "cathD" [Drosophila mela 0.490 0.614 0.528 4.5e-84
UNIPROTKB|O93428396 ctsd "Cathepsin D" [Chionodrac 0.574 0.712 0.447 7.3e-84
UNIPROTKB|Q05744398 CTSD "Cathepsin D" [Gallus gal 0.592 0.731 0.456 1.5e-83
RGD|621511407 Ctsd "cathepsin D" [Rattus nor 0.649 0.783 0.416 6.5e-83
UNIPROTKB|Q4LAL9410 CTSD "Cathepsin D" [Canis lupu 0.525 0.629 0.459 3.2e-79
WB|WBGene00000217444 asp-4 [Caenorhabditis elegans 0.484 0.536 0.518 6.6e-79
UNIPROTKB|B9RXH6 RCOM_0903730 "Aspartic proteinase, putative" [Ricinus communis (taxid:3988)] Back     alignment and assigned GO terms
 Score = 1922 (681.6 bits), Expect = 1.6e-198, P = 1.6e-198
 Identities = 358/487 (73%), Positives = 404/487 (82%)

Query:     1 MGTKIRAVPXXXXXXXXXXXXXXXXXNDGLVRIGLKKMKLDPNNRLAARLESEHGEALRA 60
             MGT  + +                  NDGLVR+GLKKMKLD N+RLAARLES++ EALRA
Sbjct:     1 MGTNFKPLVLFLFLSSLLSSLVSSAPNDGLVRLGLKKMKLDENSRLAARLESKNAEALRA 60

Query:    61 SVKKYGFPNNLRDSEDTDIVALKNYMDAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTN 120
             SV+KYG      DS+DTDIVALKNY+DAQYYGEIGIGTPPQKFTV+FDTGSSNLWVPS+ 
Sbjct:    61 SVRKYGLRG---DSKDTDIVALKNYLDAQYYGEIGIGTPPQKFTVVFDTGSSNLWVPSSK 117

Query:   121 CYFSVACYFHXXXXXXXXXXXXXNGESASIQYGTGAIAGFFSYDSVKVGDLVVKDQEFIE 180
             C FSVAC+FH             NG+SA I YG+GAI+GFFS D+V VG+LVVKDQEFIE
Sbjct:   118 CIFSVACFFHSRYKSGQSSTYKKNGKSAEIHYGSGAISGFFSSDNVVVGNLVVKDQEFIE 177

Query:   181 ATREPGVTFMVAKFDGILGLGFQEISVGNAVPVWYNMVKQGLIQDPVFSFWLNRNQQEDE 240
             AT+EPGVTF+ AKFDGILGLGFQEISVGNAVPVWYNM+KQGLI++PVFSFWLNRN Q +E
Sbjct:   178 ATKEPGVTFVAAKFDGILGLGFQEISVGNAVPVWYNMIKQGLIKEPVFSFWLNRNTQGEE 237

Query:   241 GGEIVFGGVDPNHYKGKHTYVPVTQKGYWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSL 300
             GGEIVFGGVD NHYKGKHTYVPVTQKGYWQF MGDVLIG KPT YCAGGCSAIADSGTSL
Sbjct:   238 GGEIVFGGVDLNHYKGKHTYVPVTQKGYWQFEMGDVLIGHKPTEYCAGGCSAIADSGTSL 297

Query:   301 LAGPTTVITMINHAIGASGVVSQQCKAVVEQYGQTILDLLLFEAHPKKICSQMGLCTFDG 360
             LAGPTTV+T+IN AIGA+GV SQ+CK V+ QYG+TI+DLL+ EA PKKICSQ+GLCTFDG
Sbjct:   298 LAGPTTVVTLINEAIGATGVASQECKTVIAQYGETIMDLLIAEAQPKKICSQIGLCTFDG 357

Query:   361 KRGVSMGIESVVDESNDKSSGVLNNAMCSACEMAVVWMXXXXXXXXXXXXXXXYVNELCD 420
              RGVSMGI+SVVD++NDKSSG++ +AMCSACEM VVWM               YVNELCD
Sbjct:   358 TRGVSMGIQSVVDDNNDKSSGIVRDAMCSACEMTVVWMQNQLRENQTQDRILNYVNELCD 417

Query:   421 RMPSPMGESAVDCGKLSSMPIVSFTIGGKVFDLSPEEYILKVGEGPEAQCISGFTAMDVP 480
             R+P+P+GES VDCG +SSMP+VSFTIGGKVFDLSP+EYILKVGEG +AQCISGF A+DVP
Sbjct:   418 RIPNPLGESIVDCGSISSMPVVSFTIGGKVFDLSPQEYILKVGEGAQAQCISGFMALDVP 477

Query:   481 PPRGPLW 487
             PPRGPLW
Sbjct:   478 PPRGPLW 484
GO:0005783 "endoplasmic reticulum" evidence=IDA
TAIR|locus:2008940 APA1 "aspartic proteinase A1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2018037 AT1G62290 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2137189 AT4G04460 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
FB|FBgn0029093 cathD "cathD" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|O93428 ctsd "Cathepsin D" [Chionodraco hamatus (taxid:36188)] Back     alignment and assigned GO terms
UNIPROTKB|Q05744 CTSD "Cathepsin D" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
RGD|621511 Ctsd "cathepsin D" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q4LAL9 CTSD "Cathepsin D" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
WB|WBGene00000217 asp-4 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O04057ASPR_CUCPE3, ., 4, ., 2, 3, ., -0.78630.97750.9356N/Ano
Q42456ASPR1_ORYSJ3, ., 4, ., 2, 3, ., -0.74560.93070.8978yesno
Q9XFX3CARDA_CYNCA3, ., 4, ., 2, 3, ., -0.61600.97140.9464N/Ano
O65390APA1_ARATH3, ., 4, ., 2, 3, ., -0.76140.96530.9367yesno
Q9XFX4CARDB_CYNCA3, ., 4, ., 2, 3, ., -0.61470.97350.9446N/Ano
P42210ASPR_HORVU3, ., 4, ., 2, 3, ., 4, 00.73010.93890.9074N/Ano
Q8VYL3APA2_ARATH3, ., 4, ., 2, 3, ., -0.73770.98770.9454nono
P40782CYPR1_CYNCA3, ., 4, ., 2, 3, ., -0.70410.90830.9429N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.230.976
3rd Layer3.4.23.41LOW CONFIDENCE prediction!
3rd Layer3.4.23.400.991

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pg.C_1660009
hypothetical protein (512 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query491
cd06098317 cd06098, phytepsin, Phytepsin, a plant homolog of 0.0
cd05485329 cd05485, Cathepsin_D_like, Cathepsin_D_like, pepsi 1e-114
pfam00026316 pfam00026, Asp, Eukaryotic aspartyl protease 1e-110
cd05488320 cd05488, Proteinase_A_fungi, Fungal Proteinase A , 3e-99
cd05490325 cd05490, Cathepsin_D2, Cathepsin_D2, pepsin family 7e-99
cd05478317 cd05478, pepsin_A, Pepsin A, aspartic protease pro 6e-96
cd05471283 cd05471, pepsin_like, Pepsin-like aspartic proteas 3e-90
cd05487326 cd05487, renin_like, Renin stimulates production o 1e-88
cd05477318 cd05477, gastricsin, Gastricsins, asparate proteas 5e-88
cd05486316 cd05486, Cathespin_E, Cathepsin E, non-lysosomal a 1e-84
PTZ00165482 PTZ00165, PTZ00165, aspartyl protease; Provisional 7e-62
PTZ00013450 PTZ00013, PTZ00013, plasmepsin 4 (PM4); Provisiona 5e-43
cd05470109 cd05470, pepsin_retropepsin_like, Cellular and ret 1e-41
PTZ00147453 PTZ00147, PTZ00147, plasmepsin-1; Provisional 1e-40
cd06097278 cd06097, Aspergillopepsin_like, Aspergillopepsin_l 6e-38
cd06098317 cd06098, phytepsin, Phytepsin, a plant homolog of 2e-32
cd05474295 cd05474, SAP_like, SAPs, pepsin-like proteinases s 2e-29
cd05473364 cd05473, beta_secretase_like, Beta-secretase, aspa 7e-26
cd05490325 cd05490, Cathepsin_D2, Cathepsin_D2, pepsin family 5e-22
cd05485329 cd05485, Cathepsin_D_like, Cathepsin_D_like, pepsi 3e-18
cd06096326 cd06096, Plasmepsin_5, Plasmepsins are a class of 7e-15
cd05486316 cd05486, Cathespin_E, Cathepsin E, non-lysosomal a 8e-15
cd05487326 cd05487, renin_like, Renin stimulates production o 2e-13
cd05488320 cd05488, Proteinase_A_fungi, Fungal Proteinase A , 3e-13
pfam0518439 pfam05184, SapB_1, Saposin-like type B, region 1 3e-13
cd05476265 cd05476, pepsin_A_like_plant, Chroloplast Nucleoid 3e-11
PTZ00165482 PTZ00165, PTZ00165, aspartyl protease; Provisional 4e-11
pfam0348935 pfam03489, SapB_2, Saposin-like type B, region 2 2e-10
pfam00026316 pfam00026, Asp, Eukaryotic aspartyl protease 6e-10
cd05472299 cd05472, cnd41_like, Chloroplast Nucleoids DNA-bin 3e-07
cd05478317 cd05478, pepsin_A, Pepsin A, aspartic protease pro 2e-06
smart0074176 smart00741, SapB, Saposin (B) Domains 2e-06
smart0074176 smart00741, SapB, Saposin (B) Domains 1e-05
PLN03146431 PLN03146, PLN03146, aspartyl protease family prote 1e-05
cd05475273 cd05475, nucellin_like, Nucellins, plant aspartic 7e-05
cd05477318 cd05477, gastricsin, Gastricsins, asparate proteas 0.004
>gnl|CDD|133162 cd06098, phytepsin, Phytepsin, a plant homolog of mammalian lysosomal pepsins Back     alignment and domain information 
 Score =  519 bits (1338), Expect = 0.0
 Identities = 198/243 (81%), Positives = 226/243 (93%)

Query: 80  VALKNYMDAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHSKYKSSQSS 139
           VALKNY+DAQY+GEIGIGTPPQKFTVIFDTGSSNLWVPS+ CYFS+ACYFHSKYKSS+SS
Sbjct: 1   VALKNYLDAQYFGEIGIGTPPQKFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYKSSKSS 60

Query: 140 TYKKNGESASIQYGTGAIAGFFSYDSVKVGDLVVKDQEFIEATREPGVTFMVAKFDGILG 199
           TYKKNG SASIQYGTG+I+GFFS DSV VGDLVVK+Q FIEAT+EPG+TF++AKFDGILG
Sbjct: 61  TYKKNGTSASIQYGTGSISGFFSQDSVTVGDLVVKNQVFIEATKEPGLTFLLAKFDGILG 120

Query: 200 LGFQEISVGNAVPVWYNMVKQGLIQDPVFSFWLNRNQQEDEGGEIVFGGVDPNHYKGKHT 259
           LGFQEISVG AVPVWYNMV+QGL+++PVFSFWLNRN  E+EGGE+VFGGVDP H+KG+HT
Sbjct: 121 LGFQEISVGKAVPVWYNMVEQGLVKEPVFSFWLNRNPDEEEGGELVFGGVDPKHFKGEHT 180

Query: 260 YVPVTQKGYWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVITMINHAIGASG 319
           YVPVT+KGYWQF MGDVLIGGK TG+CAGGC+AIADSGTSLLAGPTT++T IN A+  + 
Sbjct: 181 YVPVTRKGYWQFEMGDVLIGGKSTGFCAGGCAAIADSGTSLLAGPTTIVTQINSAVDCNS 240

Query: 320 VVS 322
           + S
Sbjct: 241 LSS 243

Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. This family of aspartate proteases is classified by MEROPS as the peptidase family A1 (pepsin A, clan AA). Length = 317
>gnl|CDD|133152 cd05485, Cathepsin_D_like, Cathepsin_D_like, pepsin family of proteinases Back     alignment and domain information
>gnl|CDD|215663 pfam00026, Asp, Eukaryotic aspartyl protease Back     alignment and domain information
>gnl|CDD|133155 cd05488, Proteinase_A_fungi, Fungal Proteinase A , aspartic proteinase superfamily Back     alignment and domain information
>gnl|CDD|133157 cd05490, Cathepsin_D2, Cathepsin_D2, pepsin family of proteinases Back     alignment and domain information
>gnl|CDD|133145 cd05478, pepsin_A, Pepsin A, aspartic protease produced in gastric mucosa of mammals Back     alignment and domain information
>gnl|CDD|133138 cd05471, pepsin_like, Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH Back     alignment and domain information
>gnl|CDD|133154 cd05487, renin_like, Renin stimulates production of angiotensin and thus affects blood pressure Back     alignment and domain information
>gnl|CDD|133144 cd05477, gastricsin, Gastricsins, asparate proteases produced in gastric mucosa Back     alignment and domain information
>gnl|CDD|133153 cd05486, Cathespin_E, Cathepsin E, non-lysosomal aspartic protease Back     alignment and domain information
>gnl|CDD|240300 PTZ00165, PTZ00165, aspartyl protease; Provisional Back     alignment and domain information
>gnl|CDD|140051 PTZ00013, PTZ00013, plasmepsin 4 (PM4); Provisional Back     alignment and domain information
>gnl|CDD|133137 cd05470, pepsin_retropepsin_like, Cellular and retroviral pepsin-like aspartate proteases Back     alignment and domain information
>gnl|CDD|140176 PTZ00147, PTZ00147, plasmepsin-1; Provisional Back     alignment and domain information
>gnl|CDD|133161 cd06097, Aspergillopepsin_like, Aspergillopepsin_like, aspartic proteases of fungal origin Back     alignment and domain information
>gnl|CDD|133162 cd06098, phytepsin, Phytepsin, a plant homolog of mammalian lysosomal pepsins Back     alignment and domain information
>gnl|CDD|133141 cd05474, SAP_like, SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins Back     alignment and domain information
>gnl|CDD|133140 cd05473, beta_secretase_like, Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease Back     alignment and domain information
>gnl|CDD|133157 cd05490, Cathepsin_D2, Cathepsin_D2, pepsin family of proteinases Back     alignment and domain information
>gnl|CDD|133152 cd05485, Cathepsin_D_like, Cathepsin_D_like, pepsin family of proteinases Back     alignment and domain information
>gnl|CDD|133160 cd06096, Plasmepsin_5, Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite Back     alignment and domain information
>gnl|CDD|133153 cd05486, Cathespin_E, Cathepsin E, non-lysosomal aspartic protease Back     alignment and domain information
>gnl|CDD|133154 cd05487, renin_like, Renin stimulates production of angiotensin and thus affects blood pressure Back     alignment and domain information
>gnl|CDD|133155 cd05488, Proteinase_A_fungi, Fungal Proteinase A , aspartic proteinase superfamily Back     alignment and domain information
>gnl|CDD|191220 pfam05184, SapB_1, Saposin-like type B, region 1 Back     alignment and domain information
>gnl|CDD|133143 cd05476, pepsin_A_like_plant, Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants Back     alignment and domain information
>gnl|CDD|240300 PTZ00165, PTZ00165, aspartyl protease; Provisional Back     alignment and domain information
>gnl|CDD|112314 pfam03489, SapB_2, Saposin-like type B, region 2 Back     alignment and domain information
>gnl|CDD|215663 pfam00026, Asp, Eukaryotic aspartyl protease Back     alignment and domain information
>gnl|CDD|133139 cd05472, cnd41_like, Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase Back     alignment and domain information
>gnl|CDD|133145 cd05478, pepsin_A, Pepsin A, aspartic protease produced in gastric mucosa of mammals Back     alignment and domain information
>gnl|CDD|214797 smart00741, SapB, Saposin (B) Domains Back     alignment and domain information
>gnl|CDD|214797 smart00741, SapB, Saposin (B) Domains Back     alignment and domain information
>gnl|CDD|178691 PLN03146, PLN03146, aspartyl protease family protein; Provisional Back     alignment and domain information
>gnl|CDD|133142 cd05475, nucellin_like, Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation Back     alignment and domain information
>gnl|CDD|133144 cd05477, gastricsin, Gastricsins, asparate proteases produced in gastric mucosa Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 491
PTZ00165482 aspartyl protease; Provisional 100.0
cd05490325 Cathepsin_D2 Cathepsin_D2, pepsin family of protei 100.0
cd06098317 phytepsin Phytepsin, a plant homolog of mammalian 100.0
cd05486316 Cathespin_E Cathepsin E, non-lysosomal aspartic pr 100.0
cd05487326 renin_like Renin stimulates production of angioten 100.0
cd05485329 Cathepsin_D_like Cathepsin_D_like, pepsin family o 100.0
cd05488320 Proteinase_A_fungi Fungal Proteinase A , aspartic 100.0
cd05478317 pepsin_A Pepsin A, aspartic protease produced in g 100.0
cd05477318 gastricsin Gastricsins, asparate proteases produce 100.0
PTZ00147453 plasmepsin-1; Provisional 100.0
PTZ00013450 plasmepsin 4 (PM4); Provisional 100.0
PF00026317 Asp: Eukaryotic aspartyl protease The Prosite entr 100.0
KOG1339398 consensus Aspartyl protease [Posttranslational mod 100.0
cd06097278 Aspergillopepsin_like Aspergillopepsin_like, aspar 100.0
cd05473364 beta_secretase_like Beta-secretase, aspartic-acid 100.0
PLN03146431 aspartyl protease family protein; Provisional 100.0
cd05474295 SAP_like SAPs, pepsin-like proteinases secreted fr 100.0
cd06096326 Plasmepsin_5 Plasmepsins are a class of aspartic p 100.0
cd05472299 cnd41_like Chloroplast Nucleoids DNA-binding Prote 100.0
cd05471283 pepsin_like Pepsin-like aspartic proteases, biloba 100.0
cd05475273 nucellin_like Nucellins, plant aspartic proteases 100.0
cd05476265 pepsin_A_like_plant Chroloplast Nucleoids DNA-bind 100.0
cd05489362 xylanase_inhibitor_I_like TAXI-I inhibits degradat 100.0
cd05470109 pepsin_retropepsin_like Cellular and retroviral pe 99.88
PF14543164 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 99.85
PF14541161 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 99.04
PF0518439 SapB_1: Saposin-like type B, region 1; InterPro: I 98.33
cd0548396 retropepsin_like_bacteria Bacterial aspartate prot 98.06
TIGR02281121 clan_AA_DTGA clan AA aspartic protease, TIGR02281 97.37
PF1365090 Asp_protease_2: Aspartyl protease 96.55
PF0348935 SapB_2: Saposin-like type B, region 2; InterPro: I 95.6
PF11925370 DUF3443: Protein of unknown function (DUF3443); In 95.39
cd05479124 RP_DDI RP_DDI; retropepsin-like domain of DNA dama 95.17
COG3577215 Predicted aspartyl protease [General function pred 94.89
smart0074176 SapB Saposin (B) Domains. Present in multiple copi 94.62
cd0548491 retropepsin_like_LTR_2 Retropepsins_like_LTR, peps 94.27
cd0609586 RP_RTVL_H_like Retropepsin of the RTVL_H family of 92.82
KOG1340218 consensus Prosaposin [Lipid transport and metaboli 91.88
KOG1340218 consensus Prosaposin [Lipid transport and metaboli 87.67
PF0717295 GRP: Glycine rich protein family; InterPro: IPR010 87.53
PF1397572 gag-asp_proteas: gag-polyprotein putative aspartyl 85.96
PF0796629 A1_Propeptide: A1 Propeptide ; InterPro: IPR012848 80.54
>PTZ00165 aspartyl protease; Provisional Back     alignment and domain information 
Probab=100.00  E-value=6.1e-58  Score=481.14  Aligned_cols=343  Identities=38%  Similarity=0.678  Sum_probs=283.6

Q ss_pred             ceEEEeeeecCCChhhhhhhcchhhhhHHHHhhhhccCCCCCCCCCCCcceeeeeecCCceEEEEEEEcCCCceEEEEEe
Q 011190           29 GLVRIGLKKMKLDPNNRLAARLESEHGEALRASVKKYGFPNNLRDSEDTDIVALKNYMDAQYYGEIGIGTPPQKFTVIFD  108 (491)
Q Consensus        29 ~~~~ipl~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~n~~~~~Y~~~i~iGtP~Q~~~v~lD  108 (491)
                      .++|+||+|..+.++++.+.+...-..+.+.  .+++...+. ........+||.|+.|.+|+++|+||||||+|.|++|
T Consensus        63 ~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~l~n~~d~~Y~~~I~IGTPpQ~f~Vv~D  139 (482)
T PTZ00165         63 PAHKVELHRFALLKKKRKKNSEKGYISRVLT--KHKYLETKD-PNGLQYLQQDLLNFHNSQYFGEIQVGTPPKSFVVVFD  139 (482)
T ss_pred             heEEeeeEEcchHHHhhhhHHHHHhhhhhhh--ccccccccc-cccccccceecccccCCeEEEEEEeCCCCceEEEEEe
Confidence            5899999998777655443311000000000  111111000 0001346799999999999999999999999999999


Q ss_pred             CCCCceeeeCCCCCCCccccCCCCCCCCCCCccee--cCc---eEEEEecCceEEEEEEEEEEEECcEeecccEEEEEEe
Q 011190          109 TGSSNLWVPSTNCYFSVACYFHSKYKSSQSSTYKK--NGE---SASIQYGTGAIAGFFSYDSVKVGDLVVKDQEFIEATR  183 (491)
Q Consensus       109 TGSs~lWV~~~~C~~~~~C~~~~~f~p~~SsT~~~--~~~---~~~~~Yg~gs~~G~~~~D~v~ig~~~i~~~~fg~~~~  183 (491)
                      |||+++||++..|. ..+|..|+.|||++|+||+.  .+.   .+.+.||+|++.|.+++|+|++|+..+++|.||+++.
T Consensus       140 TGSS~lWVps~~C~-~~~C~~~~~yd~s~SSTy~~~~~~~~~~~~~i~YGsGs~~G~l~~DtV~ig~l~i~~q~FG~a~~  218 (482)
T PTZ00165        140 TGSSNLWIPSKECK-SGGCAPHRKFDPKKSSTYTKLKLGDESAETYIQYGTGECVLALGKDTVKIGGLKVKHQSIGLAIE  218 (482)
T ss_pred             CCCCCEEEEchhcC-cccccccCCCCccccCCcEecCCCCccceEEEEeCCCcEEEEEEEEEEEECCEEEccEEEEEEEe
Confidence            99999999999997 56899999999999999998  555   6789999999999999999999999999999999998


Q ss_pred             cCCcccccccccccccCccccc---cCCCCcchHHHHHHcCCCCCCeEEEEeCCCCCCCCCeeEEECccCCCCC--ccce
Q 011190          184 EPGVTFMVAKFDGILGLGFQEI---SVGNAVPVWYNMVKQGLIQDPVFSFWLNRNQQEDEGGEIVFGGVDPNHY--KGKH  258 (491)
Q Consensus       184 ~~~~~~~~~~~~GIlGLg~~~~---s~~~~~~~~~~L~~~g~i~~~~FSl~l~~~~~~~~~G~L~fGgiD~~~~--~G~l  258 (491)
                      .++..|....+|||||||++..   +.....|++++|++||+|++++||+||.+..+  .+|+|+|||+|++++  .|++
T Consensus       219 ~s~~~f~~~~~DGILGLg~~~~s~~s~~~~~p~~~~l~~qgli~~~~FS~yL~~~~~--~~G~l~fGGiD~~~~~~~g~i  296 (482)
T PTZ00165        219 ESLHPFADLPFDGLVGLGFPDKDFKESKKALPIVDNIKKQNLLKRNIFSFYMSKDLN--QPGSISFGSADPKYTLEGHKI  296 (482)
T ss_pred             ccccccccccccceeecCCCcccccccCCCCCHHHHHHHcCCcccceEEEEeccCCC--CCCEEEeCCcCHHHcCCCCce
Confidence            7665676678899999999877   33457889999999999999999999986532  379999999999877  5789


Q ss_pred             eEEeecccceeEEEEeeEEECCeeceeecCCceEEEcCCCCcccccHHHHHHHHHHhCCCceeecccchhhhccchhhhh
Q 011190          259 TYVPVTQKGYWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVITMINHAIGASGVVSQQCKAVVEQYGQTILD  338 (491)
Q Consensus       259 ~~~pv~~~~~w~v~l~~i~vgg~~~~~~~~~~~aiiDTGTt~i~lP~~~~~~l~~~l~a~~~~~~~C~~~~~~~g~~~i~  338 (491)
                      .|+|+.+..||+|.+++|.||++.+..+...+.|++||||+++++|.+++++|.+++++.                    
T Consensus       297 ~~~Pv~~~~yW~i~l~~i~vgg~~~~~~~~~~~aIiDTGTSli~lP~~~~~~i~~~i~~~--------------------  356 (482)
T PTZ00165        297 WWFPVISTDYWEIEVVDILIDGKSLGFCDRKCKAAIDTGSSLITGPSSVINPLLEKIPLE--------------------  356 (482)
T ss_pred             EEEEccccceEEEEeCeEEECCEEeeecCCceEEEEcCCCccEeCCHHHHHHHHHHcCCc--------------------
Confidence            999999999999999999999988766667789999999999999999999999998765                    


Q ss_pred             hhhhccCcccccccCcccccCCCccccccccccccccCccccCccCcccchhhHHHHHHHHHHhhhchhHHHHHHHHHhh
Q 011190          339 LLLFEAHPKKICSQMGLCTFDGKRGVSMGIESVVDESNDKSSGVLNNAMCSACEMAVVWMQNQLQQNQTQENILQYVNEL  418 (491)
Q Consensus       339 ~~~~~~~~~~~~~~~g~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  418 (491)
                                                                                                      
T Consensus       357 --------------------------------------------------------------------------------  356 (482)
T PTZ00165        357 --------------------------------------------------------------------------------  356 (482)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hccCCCCCCceeecCcCCCCCCcEEEEECCE-----EEeeCcCccEEEeC--CCCcceeeeceeeccCCCCCCCeeEE
Q 011190          419 CDRMPSPMGESAVDCGKLSSMPIVSFTIGGK-----VFDLSPEEYILKVG--EGPEAQCISGFTAMDVPPPRGPLWYS  489 (491)
Q Consensus       419 ~~~~~~~~g~~~~~C~~~~~~p~i~f~~~g~-----~~~l~~~~yi~~~~--~~~~~~C~~~~~~~~~~~~~~~~~~~  489 (491)
                                  .+|+++..+|+|+|+|+|.     +|+|+|++|+++..  ..+...|+++|+++|.|.+.||.||-
T Consensus       357 ------------~~C~~~~~lP~itf~f~g~~g~~v~~~l~p~dYi~~~~~~~~~~~~C~~g~~~~d~~~~~g~~~IL  422 (482)
T PTZ00165        357 ------------EDCSNKDSLPRISFVLEDVNGRKIKFDMDPEDYVIEEGDSEEQEHQCVIGIIPMDVPAPRGPLFVL  422 (482)
T ss_pred             ------------ccccccccCCceEEEECCCCCceEEEEEchHHeeeecccCCCCCCeEEEEEEECCCCCCCCceEEE
Confidence                        1898888999999999864     89999999999852  33457899999999999888999973

>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases Back     alignment and domain information
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins Back     alignment and domain information
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease Back     alignment and domain information
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure Back     alignment and domain information
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases Back     alignment and domain information
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily Back     alignment and domain information
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals Back     alignment and domain information
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa Back     alignment and domain information
>PTZ00147 plasmepsin-1; Provisional Back     alignment and domain information
>PTZ00013 plasmepsin 4 (PM4); Provisional Back     alignment and domain information
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077 Back     alignment and domain information
>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin Back     alignment and domain information
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease Back     alignment and domain information
>PLN03146 aspartyl protease family protein; Provisional Back     alignment and domain information
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins Back     alignment and domain information
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite Back     alignment and domain information
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase Back     alignment and domain information
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH Back     alignment and domain information
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation Back     alignment and domain information
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants Back     alignment and domain information
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall Back     alignment and domain information
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases Back     alignment and domain information
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A Back     alignment and domain information
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A Back     alignment and domain information
>PF05184 SapB_1: Saposin-like type B, region 1; InterPro: IPR007856 Synonym(s):cerebroside sulphate activator, CSAct Saposin B is a small non-enzymatic glycoprotein required for the breakdown of cerebroside sulphates (sulphatides) in lysosomes Back     alignment and domain information
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family Back     alignment and domain information
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family Back     alignment and domain information
>PF13650 Asp_protease_2: Aspartyl protease Back     alignment and domain information
>PF03489 SapB_2: Saposin-like type B, region 2; InterPro: IPR008138 Saposins are small lysosomal proteins that serve as activators of various lysosomal lipid-degrading enzymes [] Back     alignment and domain information
>PF11925 DUF3443: Protein of unknown function (DUF3443); InterPro: IPR021847 This family of proteins are functionally uncharacterised Back     alignment and domain information
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein Back     alignment and domain information
>COG3577 Predicted aspartyl protease [General function prediction only] Back     alignment and domain information
>smart00741 SapB Saposin (B) Domains Back     alignment and domain information
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases Back     alignment and domain information
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements Back     alignment and domain information
>KOG1340 consensus Prosaposin [Lipid transport and metabolism; Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG1340 consensus Prosaposin [Lipid transport and metabolism; Carbohydrate transport and metabolism] Back     alignment and domain information
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins Back     alignment and domain information
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease Back     alignment and domain information
>PF07966 A1_Propeptide: A1 Propeptide ; InterPro: IPR012848 Most eukaryotic endopeptidases (MEROPS peptidase family A1) are synthesised with signal and propeptides Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query491
1qdm_A478 Crystal Structure Of Prophytepsin, A Zymogen Of A B 0.0
1b5f_A239 Native Cardosin A From Cynara Cardunculus L. Length 1e-85
1tzs_A351 Crystal Structure Of An Activation Intermediate Of 3e-58
1tzs_A351 Crystal Structure Of An Activation Intermediate Of 2e-08
1htr_B329 Crystal And Molecular Structures Of Human Progastri 3e-58
2x0b_A383 Crystal Structure Of Human Angiotensinogen Complexe 3e-57
2x0b_A383 Crystal Structure Of Human Angiotensinogen Complexe 1e-06
2bks_A340 Crystal Structure Of Renin-Pf00074777 Complex Lengt 8e-57
2bks_A340 Crystal Structure Of Renin-Pf00074777 Complex Lengt 9e-07
2i4q_A336 Human ReninPF02342674 COMPLEX Length = 336 8e-57
2i4q_A336 Human ReninPF02342674 COMPLEX Length = 336 9e-07
3d91_A341 Human Renin In Complex With Remikiren Length = 341 9e-57
3d91_A341 Human Renin In Complex With Remikiren Length = 341 8e-07
1hrn_A337 High Resolution Crystal Structures Of Recombinant H 1e-56
1hrn_A337 High Resolution Crystal Structures Of Recombinant H 9e-07
2g24_A333 Ketopiperazine-Based Renin Inhibitors: Optimization 1e-56
2g24_A333 Ketopiperazine-Based Renin Inhibitors: Optimization 9e-07
3vcm_A335 Crystal Structure Of Human Prorenin Length = 335 6e-56
3vcm_A335 Crystal Structure Of Human Prorenin Length = 335 9e-07
1g0v_A329 The Structure Of Proteinase A Complexed With A Ia3 7e-56
1g0v_A329 The Structure Of Proteinase A Complexed With A Ia3 8e-05
1dp5_A329 The Structure Of Proteinase A Complexed With A Ia3 1e-55
1dp5_A329 The Structure Of Proteinase A Complexed With A Ia3 7e-05
2jxr_A329 Structure Of Yeast Proteinase A Length = 329 1e-55
2jxr_A329 Structure Of Yeast Proteinase A Length = 329 7e-05
1smr_A335 The 3-D Structure Of Mouse Submaxillary Renin Compl 6e-55
1smr_A335 The 3-D Structure Of Mouse Submaxillary Renin Compl 6e-09
3psg_A370 The High Resolution Crystal Structure Of Porcine Pe 6e-54
3psg_A370 The High Resolution Crystal Structure Of Porcine Pe 3e-07
3pep_A326 Revised 2.3 Angstroms Structure Of Porcine Pepsin. 8e-54
3pep_A326 Revised 2.3 Angstroms Structure Of Porcine Pepsin. 3e-07
2psg_A370 Refined Structure Of Porcine Pepsinogen At 1.8 Angs 8e-54
2psg_A370 Refined Structure Of Porcine Pepsinogen At 1.8 Angs 3e-07
1psa_A326 Structure Of A Pepsin(Slash)renin Inhibitor Complex 8e-54
1psa_A326 Structure Of A Pepsin(Slash)renin Inhibitor Complex 2e-07
5pep_A326 X-Ray Analyses Of Aspartic Proteases. Ii. Three-Dim 9e-54
5pep_A326 X-Ray Analyses Of Aspartic Proteases. Ii. Three-Dim 1e-07
1f34_A326 Crystal Structure Of Ascaris Pepsin Inhibitor-3 Bou 1e-53
1f34_A326 Crystal Structure Of Ascaris Pepsin Inhibitor-3 Bou 2e-07
4pep_A326 The Molecular And Crystal Structures Of Monoclinic 1e-53
4pep_A326 The Molecular And Crystal Structures Of Monoclinic 3e-07
1pso_E326 The Crystal Structure Of Human Pepsin And Its Compl 3e-53
1pso_E326 The Crystal Structure Of Human Pepsin And Its Compl 8e-07
1flh_A326 Crystal Structure Of Human Uropepsin At 2.45 A Reso 3e-53
1flh_A326 Crystal Structure Of Human Uropepsin At 2.45 A Reso 4e-07
4aa9_A320 Camel Chymosin At 1.6a Resolution Length = 320 5e-51
1czi_E323 Chymosin Complex With The Inhibitor Cp-113972 Lengt 1e-50
3cms_A323 Engineering Enzyme Sub-Site Specificity: Preparatio 2e-50
1am5_A324 The Crystal Structure And Proposed Amino Acid Seque 9e-45
3oad_A166 Design And Optimization Of New Piperidines As Renin 3e-39
1lya_B241 Crystal Structures Of Native And Inhibited Forms Of 1e-33
1lya_B241 Crystal Structures Of Native And Inhibited Forms Of 4e-14
1ls5_A328 Crystal Structure Of Plasmepsin Iv From P. Falcipar 1e-32
2anl_A327 X-Ray Crystal Structure Of The Aspartic Protease Pl 7e-31
3qrv_A336 Crystal Structure Of Plasmepsin I (Pmi) From Plasmo 1e-30
1miq_A375 Crystal Structure Of Proplasmepsin From The Human M 9e-30
1qs8_B329 Crystal Structure Of The P. Vivax Aspartic Proteina 7e-29
2bju_A453 Plasmepsin Ii Complexed With A Highly Active Achira 2e-28
1pfz_A380 Proplasmepsin Ii From Plasmodium Falciparum Length 2e-28
1m43_A331 Crystal Structure Of Pmii In Complex With Pepstatin 8e-28
1lf3_A331 Crystal Structure Of Plasmepsin Ii From P Falciparu 9e-28
3f9q_A329 Re-Refinement Of Uncomplexed Plasmepsin Ii From Pla 1e-27
1sme_A329 Plasmepsin Ii, A Hemoglobin-Degrading Enzyme From P 1e-27
1uh7_A325 Crystal Structure Of Rhizopuspepsin At Ph 4.6 Lengt 5e-25
3apr_E325 Binding Of A Reduced Peptide Inhibitor To The Aspar 1e-24
1lyw_A97 Cathepsin D At Ph 7.5 Length = 97 2e-23
3fns_A332 Crystal Structure Of Histo-Aspartic Protease (Hap) 4e-19
3qvc_A451 Crystal Structure Of Histo-Aspartic Protease (Hap) 5e-19
3rfi_A108 Crystal Structure Of The Saposin-Like Domain Of Pla 7e-19
2rmp_A361 Rmp-Pepstatin A Complex Length = 361 2e-18
2qzx_A342 Secreted Aspartic Proteinase (Sap) 5 From Candida A 4e-16
1b5f_B87 Native Cardosin A From Cynara Cardunculus L. Length 4e-16
1wkr_A340 Crystal Structure Of Aspartic Proteinase From Irpex 6e-16
1j71_A334 Structure Of The Extracellular Aspartic Proteinase 6e-16
1zap_A342 Secreted Aspartic Protease From C. Albicans Length 2e-15
1eag_A342 Secreted Aspartic Proteinase (Sap2) From Candida Al 2e-15
2ewy_A383 Crystal Structure Of Human Bace2 In Complex With A 3e-15
1yg9_A330 The Structure Of Mutant (N93q) Of Bla G 2 Length = 5e-15
3liz_A334 Crystal Structure Of Bla G 2 Complexed With Fab 4c3 5e-15
1mpp_A361 X-Ray Analyses Of Aspartic Proteinases. V. Structur 7e-15
2h6s_A340 Secreted Aspartic Proteinase (sap) 3 From Candida A 1e-14
3fv3_A339 Secreted Aspartic Protease 1 From Candida Parapsilo 1e-13
2qzw_A341 Secreted Aspartic Proteinase (Sap) 1 From Candida A 3e-12
1ppl_E323 Crystallographic Analysis Of Transition-State Mimic 1e-11
3oad_B176 Design And Optimization Of New Piperidines As Renin 5e-11
3oad_B176 Design And Optimization Of New Piperidines As Renin 1e-06
1epr_E330 Endothia Aspartic Proteinase (Endothiapepsin) Compl 6e-11
1er8_E330 The Active Site Of Aspartic Proteinases Length = 33 6e-11
1gkt_A329 Neutron Laue Diffraction Structure Of Endothiapepsi 7e-11
1gvt_A329 Endothiapepsin Complex With Cp-80,794 Length = 329 7e-11
3c9x_A329 Crystal Structure Of Trichoderma Reesei Aspartic Pr 2e-10
3exo_A413 Crystal Structure Of Bace1 Bound To Inhibitor Lengt 2e-10
3qi1_A408 Design And Synthesis Of Hydroxyethylamine (Hea) Bac 2e-10
1tqf_A405 Crystal Structure Of Human Beta Secretase Complexed 2e-10
2qzl_A411 Crystal Structure Of Human Beta Secretase Complexed 2e-10
3tpj_A433 Apo Structure Of Bace1 Length = 433 2e-10
2zjj_A405 Crystal Structure Of The Human Bace1 Catalytic Doma 8e-10
3dm6_A406 Beta-Secretase 1 Complexed With Statine-Based Inhib 2e-09
3l58_A414 Structure Of Bace Bound To Sch589432 Length = 414 2e-09
1w50_A411 Apo Structure Of Bace (beta Secretase) Length = 411 2e-09
2zjh_A405 Crystal Structure Of The Human Bace1 Catalytic Doma 2e-09
3hvg_A411 Structure Of Bace (Beta Secretase) In Complex With 2e-09
3ixk_A405 Potent Beta-Secretase 1 Inhibitor Length = 405 2e-09
2zji_A405 Crystal Structure Of The Human Bace1 Catalytic Doma 2e-09
3ckp_A412 Crystal Structure Of Bace-1 In Complex With Inhibit 2e-09
2zjn_A405 Crystal Structure Of The Human Bace1 Catalytic Doma 2e-09
1ym4_A408 Crystal Structure Of Human Beta Secretase Complexed 2e-09
2zhr_A411 Crystal Structure Of Bace1 In Complex With Om99-2 A 2e-09
2qu2_A415 Bace1 With Compound 1 Length = 415 2e-09
3vv6_A416 Crystal Structure Of Beta Secetase In Complex With 2e-09
3tpr_A433 Crystal Structure Of Bace1 Complexed With An Inhibi 2e-09
1ym2_A402 Crystal Structure Of Human Beta Secretase Complexed 3e-09
2hiz_A455 Crystal Structure Of Human Beta-Secretase (Bace) In 3e-09
2hm1_A406 Crystal Structure Of Human Beta-Secretase (Bace) In 3e-09
2of0_A402 X-Ray Crystal Structure Of Beta Secretase Complexed 3e-09
3lpi_A455 Structure Of Bace Bound To Sch745132 Length = 455 3e-09
2va5_A455 X-Ray Crystal Structure Of Beta Secretase Complexed 3e-09
2qk5_A395 Structure Of Bace1 Bound To Sch626485 Length = 395 3e-09
3kmx_A395 Structure Of Bace Bound To Sch346572 Length = 395 3e-09
2zjk_A405 Crystal Structure Of The Human Bace1 Catalytic Doma 3e-09
4ewo_A386 Design And Synthesis Of Potent Hydroxyethylamine (H 3e-09
2wjo_A412 Human Bace (Beta Secretase) In Complex With Cyclohe 3e-09
3bra_A409 Bace-1 Complexed With Compound 1 Length = 409 3e-09
3udh_A404 Crystal Structure Of Bace With Compound 1 Length = 3e-09
1fkn_A391 Structure Of Beta-Secretase Complexed With Inhibito 3e-09
2fdp_A388 Crystal Structure Of Beta-Secretase Complexed With 3e-09
3cib_A390 Structure Of Bace Bound To Sch727596 Length = 390 3e-09
1sgz_A389 Crystal Structure Of Unbound Beta-Secretase Catalyt 3e-09
3r1g_B402 Structure Basis Of Allosteric Inhibition Of Bace1 B 3e-09
4dpf_A391 Bace-1 In Complex With A Hea-Macrocyclic Type Inhib 3e-09
3u6a_A390 Rational Design And Synthesis Of Aminopiperazinones 3e-09
4b1d_A388 New Aminoimidazoles As Bace-1 Inhibitors: From Rati 4e-09
2vie_A392 Human Bace-1 In Complex With N-((1s,2r)-1-Benzyl-2- 4e-09
2q15_A385 Structure Of Bace Complexed To Compound 3a Length = 5e-09
2q11_A388 Structure Of Bace Complexed To Compound 1 Length = 5e-09
1izd_A323 Crystal Structure Of Aspergillus Oryzae Aspartic Pr 3e-07
1ibq_A325 Aspergillopepsin From Aspergillus Phoenicis Length 4e-07
4b1c_A375 New Aminoimidazoles As Bace-1 Inhibitors: From Rati 5e-05
1m12_A84 Nmr Solution Structure Of Human Saposin C Length = 5e-04
2z9a_A88 Crystal Structure Of Human Saposin C Dimer In Open 5e-04
2qyp_A91 Orthorhombic Crystal Structure Of Human Saposin C D 5e-04
2gtg_A83 Crystal Structure Of Human Saposin C Length = 83 5e-04
>pdb|1QDM|A Chain A, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley Vacuolar Aspartic Proteinase. Length = 478 Back     alignment and structure 
Iteration: 1

 Score =  640 bits (1652), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 318/457 (69%), Positives = 361/457 (78%), Gaps = 6/457 (1%)
Query: 31  VRIGLKKMKLDPNNRLAARLESEHGEALRASVKKYGFPNNLRDSEDTDIVALKNYMDAQY 90
           VRI LKK  +D N+R+A  L     + L +        N LR  E+ DIVALKNYM+AQY
Sbjct: 1   VRIALKKRPIDRNSRVATGLSGGEEQPLLSGA------NPLRSEEEGDIVALKNYMNAQY 54
Query: 91  YGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHXXXXXXXXXXXXXNGESASI 150
           +GEIG+GTPPQKFTVIFDTGSSNLWVPS  CYFS+ACY H             NG+ A+I
Sbjct: 55  FGEIGVGTPPQKFTVIFDTGSSNLWVPSAKCYFSIACYLHSRYKAGASSTYKKNGKPAAI 114
Query: 151 QYGTGAIAGFFSYDSVKVGDLVVKDQEFIEATREPGVTFMVAKFDGILGLGFQEISVGNA 210
           QYGTG+IAG+FS DSV VGDLVVKDQEFIEAT+EPG+TF+VAKFDGILGLGF+EISVG A
Sbjct: 115 QYGTGSIAGYFSEDSVTVGDLVVKDQEFIEATKEPGITFLVAKFDGILGLGFKEISVGKA 174
Query: 211 VPVWYNMVKQGLIQDPVFSFWLNRNQQEDEGGEIVFGGVDPNHYKGKHTYVPVTQKGYWQ 270
           VPVWY M++QGL+ DPVFSFWLNR+  E EGGEI+FGG+DP HY G+HTYVPVTQKGYWQ
Sbjct: 175 VPVWYKMIEQGLVSDPVFSFWLNRHVDEGEGGEIIFGGMDPKHYVGEHTYVPVTQKGYWQ 234
Query: 271 FNMGDVLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVITMINHAIGASGVVSQQCKAVVE 330
           F+MGDVL+GGK TG+CAGGC+AIADSGTSLLAGPT +IT IN  IGA+GVVSQ+CK +V 
Sbjct: 235 FDMGDVLVGGKSTGFCAGGCAAIADSGTSLLAGPTAIITEINEKIGAAGVVSQECKTIVS 294
Query: 331 QYGQTILDLLLFEAHPKKICSQMGLCTFDGKRGVSMGIESVVDESNDKSSGVLNNAMCSA 390
           QYGQ ILDLLL E  PKKICSQ+GLCTFDG RGVS GI SVVD+   KS+G+  + MCSA
Sbjct: 295 QYGQQILDLLLAETQPKKICSQVGLCTFDGTRGVSAGIRSVVDDEPVKSNGLRADPMCSA 354
Query: 391 CEMAVVWMXXXXXXXXXXXXXXXYVNELCDRMPSPMGESAVDCGKLSSMPIVSFTIGGKV 450
           CEMAVVWM               YVN+LC+R+PSPMGESAVDCG L SMP + FTIGGK 
Sbjct: 355 CEMAVVWMQNQLAQNKTQDLILDYVNQLCNRLPSPMGESAVDCGSLGSMPDIEFTIGGKK 414
Query: 451 FDLSPEEYILKVGEGPEAQCISGFTAMDVPPPRGPLW 487
           F L PEEYILKVGEG  AQCISGFTAMD+PPPRGPLW
Sbjct: 415 FALKPEEYILKVGEGAAAQCISGFTAMDIPPPRGPLW 451
>pdb|1B5F|A Chain A, Native Cardosin A From Cynara Cardunculus L. Length = 239 Back     alignment and structure
>pdb|1TZS|A Chain A, Crystal Structure Of An Activation Intermediate Of Cathepsin E Length = 351 Back     alignment and structure
>pdb|1TZS|A Chain A, Crystal Structure Of An Activation Intermediate Of Cathepsin E Length = 351 Back     alignment and structure
>pdb|1HTR|B Chain B, Crystal And Molecular Structures Of Human Progastricsin At 1.62 Angstroms Resolution Length = 329 Back     alignment and structure
>pdb|2X0B|A Chain A, Crystal Structure Of Human Angiotensinogen Complexed With Renin Length = 383 Back     alignment and structure
>pdb|2X0B|A Chain A, Crystal Structure Of Human Angiotensinogen Complexed With Renin Length = 383 Back     alignment and structure
>pdb|2BKS|A Chain A, Crystal Structure Of Renin-Pf00074777 Complex Length = 340 Back     alignment and structure
>pdb|2BKS|A Chain A, Crystal Structure Of Renin-Pf00074777 Complex Length = 340 Back     alignment and structure
>pdb|2I4Q|A Chain A, Human ReninPF02342674 COMPLEX Length = 336 Back     alignment and structure
>pdb|2I4Q|A Chain A, Human ReninPF02342674 COMPLEX Length = 336 Back     alignment and structure
>pdb|3D91|A Chain A, Human Renin In Complex With Remikiren Length = 341 Back     alignment and structure
>pdb|3D91|A Chain A, Human Renin In Complex With Remikiren Length = 341 Back     alignment and structure
>pdb|1HRN|A Chain A, High Resolution Crystal Structures Of Recombinant Human Renin In Complex With Polyhydroxymonoamide Inhibitors Length = 337 Back     alignment and structure
>pdb|1HRN|A Chain A, High Resolution Crystal Structures Of Recombinant Human Renin In Complex With Polyhydroxymonoamide Inhibitors Length = 337 Back     alignment and structure
>pdb|2G24|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The "c" Ring Length = 333 Back     alignment and structure
>pdb|2G24|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The "c" Ring Length = 333 Back     alignment and structure
>pdb|3VCM|A Chain A, Crystal Structure Of Human Prorenin Length = 335 Back     alignment and structure
>pdb|3VCM|A Chain A, Crystal Structure Of Human Prorenin Length = 335 Back     alignment and structure
>pdb|1G0V|A Chain A, The Structure Of Proteinase A Complexed With A Ia3 Mutant, Mvv Length = 329 Back     alignment and structure
>pdb|1G0V|A Chain A, The Structure Of Proteinase A Complexed With A Ia3 Mutant, Mvv Length = 329 Back     alignment and structure
>pdb|1DP5|A Chain A, The Structure Of Proteinase A Complexed With A Ia3 Mutant Inhibitor Length = 329 Back     alignment and structure
>pdb|1DP5|A Chain A, The Structure Of Proteinase A Complexed With A Ia3 Mutant Inhibitor Length = 329 Back     alignment and structure
>pdb|2JXR|A Chain A, Structure Of Yeast Proteinase A Length = 329 Back     alignment and structure
>pdb|2JXR|A Chain A, Structure Of Yeast Proteinase A Length = 329 Back     alignment and structure
>pdb|1SMR|A Chain A, The 3-D Structure Of Mouse Submaxillary Renin Complexed With A Decapeptide Inhibitor Ch-66 Based On The 4-16 Fragment Of Rat Angiotensinogen Length = 335 Back     alignment and structure
>pdb|1SMR|A Chain A, The 3-D Structure Of Mouse Submaxillary Renin Complexed With A Decapeptide Inhibitor Ch-66 Based On The 4-16 Fragment Of Rat Angiotensinogen Length = 335 Back     alignment and structure
>pdb|3PSG|A Chain A, The High Resolution Crystal Structure Of Porcine Pepsinogen Length = 370 Back     alignment and structure
>pdb|3PSG|A Chain A, The High Resolution Crystal Structure Of Porcine Pepsinogen Length = 370 Back     alignment and structure
>pdb|3PEP|A Chain A, Revised 2.3 Angstroms Structure Of Porcine Pepsin. Evidence For A Flexible Subdomain Length = 326 Back     alignment and structure
>pdb|3PEP|A Chain A, Revised 2.3 Angstroms Structure Of Porcine Pepsin. Evidence For A Flexible Subdomain Length = 326 Back     alignment and structure
>pdb|2PSG|A Chain A, Refined Structure Of Porcine Pepsinogen At 1.8 Angstroms Resolution Length = 370 Back     alignment and structure
>pdb|2PSG|A Chain A, Refined Structure Of Porcine Pepsinogen At 1.8 Angstroms Resolution Length = 370 Back     alignment and structure
>pdb|1PSA|A Chain A, Structure Of A Pepsin(Slash)renin Inhibitor Complex Reveals A Novel Crystal Packing Induced By Minor Chemical Alterations In The Inhibitor Length = 326 Back     alignment and structure
>pdb|1PSA|A Chain A, Structure Of A Pepsin(Slash)renin Inhibitor Complex Reveals A Novel Crystal Packing Induced By Minor Chemical Alterations In The Inhibitor Length = 326 Back     alignment and structure
>pdb|5PEP|A Chain A, X-Ray Analyses Of Aspartic Proteases. Ii. Three-Dimensional Structure Of The Hexagonal Crystal Form Of Porcine Pepsin At 2.3 Angstroms Resolution Length = 326 Back     alignment and structure
>pdb|5PEP|A Chain A, X-Ray Analyses Of Aspartic Proteases. Ii. Three-Dimensional Structure Of The Hexagonal Crystal Form Of Porcine Pepsin At 2.3 Angstroms Resolution Length = 326 Back     alignment and structure
>pdb|1F34|A Chain A, Crystal Structure Of Ascaris Pepsin Inhibitor-3 Bound To Porcine Pepsin Length = 326 Back     alignment and structure
>pdb|1F34|A Chain A, Crystal Structure Of Ascaris Pepsin Inhibitor-3 Bound To Porcine Pepsin Length = 326 Back     alignment and structure
>pdb|4PEP|A Chain A, The Molecular And Crystal Structures Of Monoclinic Porcine Pepsin Refined At 1.8 Angstroms Resolution Length = 326 Back     alignment and structure
>pdb|4PEP|A Chain A, The Molecular And Crystal Structures Of Monoclinic Porcine Pepsin Refined At 1.8 Angstroms Resolution Length = 326 Back     alignment and structure
>pdb|1PSO|E Chain E, The Crystal Structure Of Human Pepsin And Its Complex With Pepstatin Length = 326 Back     alignment and structure
>pdb|1PSO|E Chain E, The Crystal Structure Of Human Pepsin And Its Complex With Pepstatin Length = 326 Back     alignment and structure
>pdb|1FLH|A Chain A, Crystal Structure Of Human Uropepsin At 2.45 A Resolution Length = 326 Back     alignment and structure
>pdb|1FLH|A Chain A, Crystal Structure Of Human Uropepsin At 2.45 A Resolution Length = 326 Back     alignment and structure
>pdb|4AA9|A Chain A, Camel Chymosin At 1.6a Resolution Length = 320 Back     alignment and structure
>pdb|1CZI|E Chain E, Chymosin Complex With The Inhibitor Cp-113972 Length = 323 Back     alignment and structure
>pdb|3CMS|A Chain A, Engineering Enzyme Sub-Site Specificity: Preparation, Kinetic Characterization And X-Ray Analysis At 2.0-Angstroms Resolution Of Val111phe Site-Mutated Calf Chymosin Length = 323 Back     alignment and structure
>pdb|1AM5|A Chain A, The Crystal Structure And Proposed Amino Acid Sequence Of A Pepsin From Atlantic Cod (Gadus Morhua) Length = 324 Back     alignment and structure
>pdb|3OAD|A Chain A, Design And Optimization Of New Piperidines As Renin Inhibitors Length = 166 Back     alignment and structure
>pdb|1LYA|B Chain B, Crystal Structures Of Native And Inhibited Forms Of Human Cathepsin D: Implications For Lysosomal Targeting And Drug Design Length = 241 Back     alignment and structure
>pdb|1LYA|B Chain B, Crystal Structures Of Native And Inhibited Forms Of Human Cathepsin D: Implications For Lysosomal Targeting And Drug Design Length = 241 Back     alignment and structure
>pdb|1LS5|A Chain A, Crystal Structure Of Plasmepsin Iv From P. Falciparum In Complex With Pepstatin A Length = 328 Back     alignment and structure
>pdb|2ANL|A Chain A, X-Ray Crystal Structure Of The Aspartic Protease Plasmepsin 4 From The Malarial Parasite Plasmodium Malariae Bound To An Allophenylnorstatine Based Inhibitor Length = 327 Back     alignment and structure
>pdb|3QRV|A Chain A, Crystal Structure Of Plasmepsin I (Pmi) From Plasmodium Falciparum Length = 336 Back     alignment and structure
>pdb|1MIQ|A Chain A, Crystal Structure Of Proplasmepsin From The Human Malarial Pathogen Plasmodium Vivax Length = 375 Back     alignment and structure
>pdb|2BJU|A Chain A, Plasmepsin Ii Complexed With A Highly Active Achiral Inhibitor Length = 453 Back     alignment and structure
>pdb|1PFZ|A Chain A, Proplasmepsin Ii From Plasmodium Falciparum Length = 380 Back     alignment and structure
>pdb|1M43|A Chain A, Crystal Structure Of Pmii In Complex With Pepstatin A To 2.4 A Length = 331 Back     alignment and structure
>pdb|1LF3|A Chain A, Crystal Structure Of Plasmepsin Ii From P Falciparum In Complex With Inhibitor Eh58 Length = 331 Back     alignment and structure
>pdb|3F9Q|A Chain A, Re-Refinement Of Uncomplexed Plasmepsin Ii From Plasmodium Falciparum Length = 329 Back     alignment and structure
>pdb|1SME|A Chain A, Plasmepsin Ii, A Hemoglobin-Degrading Enzyme From Plasmodium Falciparum, In Complex With Pepstatin A Length = 329 Back     alignment and structure
>pdb|1UH7|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 4.6 Length = 325 Back     alignment and structure
>pdb|3APR|E Chain E, Binding Of A Reduced Peptide Inhibitor To The Aspartic Proteinase From Rhizopus Chinensis. Implications For A Mechanism Of Action Length = 325 Back     alignment and structure
>pdb|1LYW|A Chain A, Cathepsin D At Ph 7.5 Length = 97 Back     alignment and structure
>pdb|3FNS|A Chain A, Crystal Structure Of Histo-Aspartic Protease (Hap) From Plasmodium Falciparum Length = 332 Back     alignment and structure
>pdb|3QVC|A Chain A, Crystal Structure Of Histo-Aspartic Protease (Hap) Zymogen From Plasmodium Falciparum Length = 451 Back     alignment and structure
>pdb|3RFI|A Chain A, Crystal Structure Of The Saposin-Like Domain Of Plant Aspartic Protease From Solanum Tuberosum Length = 108 Back     alignment and structure
>pdb|2RMP|A Chain A, Rmp-Pepstatin A Complex Length = 361 Back     alignment and structure
>pdb|2QZX|A Chain A, Secreted Aspartic Proteinase (Sap) 5 From Candida Albicans Length = 342 Back     alignment and structure
>pdb|1B5F|B Chain B, Native Cardosin A From Cynara Cardunculus L. Length = 87 Back     alignment and structure
>pdb|1WKR|A Chain A, Crystal Structure Of Aspartic Proteinase From Irpex Lacteus Length = 340 Back     alignment and structure
>pdb|1J71|A Chain A, Structure Of The Extracellular Aspartic Proteinase From Candida Tropicalis Yeast Length = 334 Back     alignment and structure
>pdb|1ZAP|A Chain A, Secreted Aspartic Protease From C. Albicans Length = 342 Back     alignment and structure
>pdb|1EAG|A Chain A, Secreted Aspartic Proteinase (Sap2) From Candida Albicans Complexed With A70450 Length = 342 Back     alignment and structure
>pdb|2EWY|A Chain A, Crystal Structure Of Human Bace2 In Complex With A Hydroxyethylenamine Transition-State Inhibitor Length = 383 Back     alignment and structure
>pdb|1YG9|A Chain A, The Structure Of Mutant (N93q) Of Bla G 2 Length = 330 Back     alignment and structure
>pdb|3LIZ|A Chain A, Crystal Structure Of Bla G 2 Complexed With Fab 4c3 Length = 334 Back     alignment and structure
>pdb|1MPP|A Chain A, X-Ray Analyses Of Aspartic Proteinases. V. Structure And Refinement At 2.0 Angstroms Resolution Of The Aspartic Proteinase From Mucor Pusillus Length = 361 Back     alignment and structure
>pdb|2H6S|A Chain A, Secreted Aspartic Proteinase (sap) 3 From Candida Albicans Length = 340 Back     alignment and structure
>pdb|3FV3|A Chain A, Secreted Aspartic Protease 1 From Candida Parapsilosis In Complex With Pepstatin A Length = 339 Back     alignment and structure
>pdb|2QZW|A Chain A, Secreted Aspartic Proteinase (Sap) 1 From Candida Albicans Length = 341 Back     alignment and structure
>pdb|1PPL|E Chain E, Crystallographic Analysis Of Transition-State Mimics Bound To Penicillopepsin: Phosphorus-Containing Peptide Analogues Length = 323 Back     alignment and structure
>pdb|3OAD|B Chain B, Design And Optimization Of New Piperidines As Renin Inhibitors Length = 176 Back     alignment and structure
>pdb|3OAD|B Chain B, Design And Optimization Of New Piperidines As Renin Inhibitors Length = 176 Back     alignment and structure
>pdb|1EPR|E Chain E, Endothia Aspartic Proteinase (Endothiapepsin) Complexed With Pd-135, 040 Length = 330 Back     alignment and structure
>pdb|1ER8|E Chain E, The Active Site Of Aspartic Proteinases Length = 330 Back     alignment and structure
>pdb|1GKT|A Chain A, Neutron Laue Diffraction Structure Of Endothiapepsin Complexed With Transition State Analogue Inhibitor H261 Length = 329 Back     alignment and structure
>pdb|1GVT|A Chain A, Endothiapepsin Complex With Cp-80,794 Length = 329 Back     alignment and structure
>pdb|3C9X|A Chain A, Crystal Structure Of Trichoderma Reesei Aspartic Proteinase Length = 329 Back     alignment and structure
>pdb|3EXO|A Chain A, Crystal Structure Of Bace1 Bound To Inhibitor Length = 413 Back     alignment and structure
>pdb|3QI1|A Chain A, Design And Synthesis Of Hydroxyethylamine (Hea) Bace-1 Inhibitors: Prime Side Chromane-Containing Inhibitors Length = 408 Back     alignment and structure
>pdb|1TQF|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With Inhibitor Length = 405 Back     alignment and structure
>pdb|2QZL|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With Ixs Length = 411 Back     alignment and structure
>pdb|3TPJ|A Chain A, Apo Structure Of Bace1 Length = 433 Back     alignment and structure
>pdb|2ZJJ|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic Acid (2-Mercapto-Ethyl)- Amide Length = 405 Back     alignment and structure
>pdb|3DM6|A Chain A, Beta-Secretase 1 Complexed With Statine-Based Inhibitor Length = 406 Back     alignment and structure
>pdb|3L58|A Chain A, Structure Of Bace Bound To Sch589432 Length = 414 Back     alignment and structure
>pdb|1W50|A Chain A, Apo Structure Of Bace (beta Secretase) Length = 411 Back     alignment and structure
>pdb|2ZJH|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In Complex With N-(1-Benzyl-Piperidin-4-Yl)-4-Mercapto-Butyramide Length = 405 Back     alignment and structure
>pdb|3HVG|A Chain A, Structure Of Bace (Beta Secretase) In Complex With Ev0 Length = 411 Back     alignment and structure
>pdb|3IXK|A Chain A, Potent Beta-Secretase 1 Inhibitor Length = 405 Back     alignment and structure
>pdb|2ZJI|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In Complex With N-[1-(2, 6-Dimethoxy-Benzyl)-Piperidin-4-Yl]-4-Mercapto- Butyramide Length = 405 Back     alignment and structure
>pdb|3CKP|A Chain A, Crystal Structure Of Bace-1 In Complex With Inhibitor Length = 412 Back     alignment and structure
>pdb|2ZJN|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In Complex With N-[1-(5-Chloro-2-Isopropoxy-3-Methoxy-Benzyl)- Piperidin-4-Yl]-2-(2-Methyl-4-Sulfamoyl-Phenoxy)- Acetamide Length = 405 Back     alignment and structure
>pdb|1YM4|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With Nvp-Amk640 Length = 408 Back     alignment and structure
>pdb|2ZHR|A Chain A, Crystal Structure Of Bace1 In Complex With Om99-2 At Ph 5.0 Length = 411 Back     alignment and structure
>pdb|2QU2|A Chain A, Bace1 With Compound 1 Length = 415 Back     alignment and structure
>pdb|3VV6|A Chain A, Crystal Structure Of Beta Secetase In Complex With 2-Amino-3-Methyl-6- ((1s, 2r)-2-Phenylcyclopropyl)pyrimidin-4(3h)-One Length = 416 Back     alignment and structure
>pdb|3TPR|A Chain A, Crystal Structure Of Bace1 Complexed With An Inhibitor Length = 433 Back     alignment and structure
>pdb|1YM2|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With Nvp-Aur200 Length = 402 Back     alignment and structure
>pdb|2HIZ|A Chain A, Crystal Structure Of Human Beta-Secretase (Bace) In The Presence Of An Inhibitor Length = 455 Back     alignment and structure
>pdb|2HM1|A Chain A, Crystal Structure Of Human Beta-Secretase (Bace) In The Presence Of An Inhibitor (2) Length = 406 Back     alignment and structure
>pdb|2OF0|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With Compound 5 Length = 402 Back     alignment and structure
>pdb|3LPI|A Chain A, Structure Of Bace Bound To Sch745132 Length = 455 Back     alignment and structure
>pdb|2VA5|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With Compound 8c Length = 455 Back     alignment and structure
>pdb|2QK5|A Chain A, Structure Of Bace1 Bound To Sch626485 Length = 395 Back     alignment and structure
>pdb|3KMX|A Chain A, Structure Of Bace Bound To Sch346572 Length = 395 Back     alignment and structure
>pdb|2ZJK|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic Acid(3-Mercapto-Propyl)-Amide Length = 405 Back     alignment and structure
>pdb|4EWO|A Chain A, Design And Synthesis Of Potent Hydroxyethylamine (Hea) Bace-1 Inhibitors Length = 386 Back     alignment and structure
>pdb|2WJO|A Chain A, Human Bace (Beta Secretase) In Complex With Cyclohexanecarboxylic Acid (2-(2-Am Ino-6-Phenoxy-4h- Quinazolin-3-Yl)-2-Cyclohexyl-Ethyl)-Amide Length = 412 Back     alignment and structure
>pdb|3BRA|A Chain A, Bace-1 Complexed With Compound 1 Length = 409 Back     alignment and structure
>pdb|3UDH|A Chain A, Crystal Structure Of Bace With Compound 1 Length = 404 Back     alignment and structure
>pdb|1FKN|A Chain A, Structure Of Beta-Secretase Complexed With Inhibitor Length = 391 Back     alignment and structure
>pdb|2FDP|A Chain A, Crystal Structure Of Beta-Secretase Complexed With An Amino- Ethylene Inhibitor Length = 388 Back     alignment and structure
>pdb|3CIB|A Chain A, Structure Of Bace Bound To Sch727596 Length = 390 Back     alignment and structure
>pdb|1SGZ|A Chain A, Crystal Structure Of Unbound Beta-Secretase Catalytic Domain. Length = 389 Back     alignment and structure
>pdb|3R1G|B Chain B, Structure Basis Of Allosteric Inhibition Of Bace1 By An Exosite- Binding Antibody Length = 402 Back     alignment and structure
>pdb|4DPF|A Chain A, Bace-1 In Complex With A Hea-Macrocyclic Type Inhibitor Length = 391 Back     alignment and structure
>pdb|3U6A|A Chain A, Rational Design And Synthesis Of Aminopiperazinones As Beta Secretase (Bace) Inhibitors Length = 390 Back     alignment and structure
>pdb|4B1D|A Chain A, New Aminoimidazoles As Bace-1 Inhibitors: From Rational Design To Ab-Lowering In Brain Length = 388 Back     alignment and structure
>pdb|2VIE|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-1-Benzyl-2-Hydroxy- 3-((1,1, 5-Trimethylhexyl)amino)propyl)-3-(Ethylamino)-5-(2- Oxopyrrolidin-1-Yl)benzamide Length = 392 Back     alignment and structure
>pdb|2Q15|A Chain A, Structure Of Bace Complexed To Compound 3a Length = 385 Back     alignment and structure
>pdb|2Q11|A Chain A, Structure Of Bace Complexed To Compound 1 Length = 388 Back     alignment and structure
>pdb|1IZD|A Chain A, Crystal Structure Of Aspergillus Oryzae Aspartic Proteinase Length = 323 Back     alignment and structure
>pdb|1IBQ|A Chain A, Aspergillopepsin From Aspergillus Phoenicis Length = 325 Back     alignment and structure
>pdb|4B1C|A Chain A, New Aminoimidazoles As Bace-1 Inhibitors: From Rational Design To Ab-Lowering In Brain Length = 375 Back     alignment and structure
>pdb|1M12|A Chain A, Nmr Solution Structure Of Human Saposin C Length = 84 Back     alignment and structure
>pdb|2Z9A|A Chain A, Crystal Structure Of Human Saposin C Dimer In Open Conformation Length = 88 Back     alignment and structure
>pdb|2QYP|A Chain A, Orthorhombic Crystal Structure Of Human Saposin C Dimer In Open Conformation Length = 91 Back     alignment and structure
>pdb|2GTG|A Chain A, Crystal Structure Of Human Saposin C Length = 83 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query491
1qdm_A478 Prophytepsin; aspartic proteinases, saposin-like d 0.0
1b5f_A239 Protein (cardosin A); hydrolase, aspartic proteina 1e-150
1tzs_A351 Cathepsin E; hydrolase, aspartic protease, activat 1e-144
1tzs_A351 Cathepsin E; hydrolase, aspartic protease, activat 8e-18
2x0b_A383 Renin; hydrolase-hormone complex, hydrolase hormon 1e-143
2x0b_A383 Renin; hydrolase-hormone complex, hydrolase hormon 1e-18
1htr_B329 Gastricsin; aspartyl protease; 1.62A {Homo sapiens 1e-142
1htr_B329 Gastricsin; aspartyl protease; 1.62A {Homo sapiens 3e-16
3cms_A323 Chymosin B; hydrolase, acid proteinase; 2.00A {Bos 1e-141
3cms_A323 Chymosin B; hydrolase, acid proteinase; 2.00A {Bos 7e-11
1dpj_A329 Proteinase A; proteinase A, hydrolase-hydrolase in 1e-141
1dpj_A329 Proteinase A; proteinase A, hydrolase-hydrolase in 6e-17
3psg_A370 Pepsinogen; hydrolase(acid proteinase zymogen); 1. 1e-139
3psg_A370 Pepsinogen; hydrolase(acid proteinase zymogen); 1. 2e-17
1am5_A324 Pepsin, acid proteinase; aspartyl protease, hydrol 1e-138
1am5_A324 Pepsin, acid proteinase; aspartyl protease, hydrol 4e-15
3k1w_A341 Renin; protease, alternative splicing, aspartyl pr 1e-137
3k1w_A341 Renin; protease, alternative splicing, aspartyl pr 2e-18
2bju_A453 Plasmepsin II; aspartic proteinase, drug design, m 1e-135
2bju_A453 Plasmepsin II; aspartic proteinase, drug design, m 1e-15
3qvc_A451 Histo-aspartic protease; HAP, plasmepsin, zymogen, 1e-135
3qvc_A451 Histo-aspartic protease; HAP, plasmepsin, zymogen, 8e-13
1miq_A375 Plasmepsin; aspartic proteinase zymogen, domain op 1e-134
1miq_A375 Plasmepsin; aspartic proteinase zymogen, domain op 1e-14
1mpp_A361 Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomu 1e-133
1mpp_A361 Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomu 4e-07
2apr_A325 Rhizopuspepsin; hydrolase (aspartic proteinase); 1 1e-127
2apr_A325 Rhizopuspepsin; hydrolase (aspartic proteinase); 1 7e-09
2ewy_A383 Beta-secretase 2; BACE2, aspartic protease, hydrol 1e-126
2ewy_A383 Beta-secretase 2; BACE2, aspartic protease, hydrol 2e-06
1yg9_A330 Aspartic protease BLA G 2; allegren, hydrolase, al 1e-125
1yg9_A330 Aspartic protease BLA G 2; allegren, hydrolase, al 1e-11
3c9x_A329 Trichoderma reesei aspartic protease; aspartic pro 1e-120
3c9x_A329 Trichoderma reesei aspartic protease; aspartic pro 3e-08
3lpj_A455 Beta-secretase 1; alzheimer'S, aspartyl protease, 1e-120
3lpj_A455 Beta-secretase 1; alzheimer'S, aspartyl protease, 4e-06
2qp8_A395 Beta-secretase 1; BACE1, protease, alternative spl 1e-118
2qp8_A395 Beta-secretase 1; BACE1, protease, alternative spl 3e-06
1oew_A329 Endothiapepsin; hydrolase, aspartic proteinase mec 1e-116
1oew_A329 Endothiapepsin; hydrolase, aspartic proteinase mec 1e-08
1wkr_A340 Polyporopepsin; hydrolase, hydrolase-hydrolase inh 1e-115
1wkr_A340 Polyporopepsin; hydrolase, hydrolase-hydrolase inh 4e-12
3pvk_A342 Candidapepsin-2; hydrolase; 1.27A {Candida albican 1e-112
3pvk_A342 Candidapepsin-2; hydrolase; 1.27A {Candida albican 5e-09
1j71_A334 Candidapepsin, aspartic proteinase; candida tropic 1e-111
1j71_A334 Candidapepsin, aspartic proteinase; candida tropic 2e-04
3fv3_A339 SAPP1P-secreted aspartic protease 1; secreted aspa 1e-111
3fv3_A339 SAPP1P-secreted aspartic protease 1; secreted aspa 2e-11
2qzx_A342 Candidapepsin-5; aspartic proteinase, aspartyl pro 1e-110
2qzx_A342 Candidapepsin-5; aspartic proteinase, aspartyl pro 1e-10
1ibq_A325 Aspergillopepsin; aspartic proteinase, hydrolase; 1e-105
1ibq_A325 Aspergillopepsin; aspartic proteinase, hydrolase; 5e-08
1izd_A323 Aspartic proteinase; sugar binding, acid protease, 1e-104
1izd_A323 Aspartic proteinase; sugar binding, acid protease, 3e-07
1bxo_A323 Protein (penicillopepsin); hydrolase, phosphonate 1e-102
1bxo_A323 Protein (penicillopepsin); hydrolase, phosphonate 2e-06
1lya_B241 Cathepsin D; lysosomal aspartic protease; HET: NAG 2e-80
1lya_B241 Cathepsin D; lysosomal aspartic protease; HET: NAG 2e-19
1lya_A97 Cathepsin D; lysosomal aspartic protease; HET: NAG 5e-48
3rfi_A108 Asp; PSI, saposin, hydrolase; 1.90A {Solanum tuber 3e-45
3aup_A403 SBG7S, BG, basic 7S globulin; pepsin-like fold, pl 3e-27
1b5f_B87 Protein (cardosin A); hydrolase, aspartic proteina 4e-21
3bqp_A80 Proactivator polypeptide; saposin, sphingolipid ac 2e-14
3bqp_A80 Proactivator polypeptide; saposin, sphingolipid ac 1e-10
2qyp_A91 Proactivator polypeptide; saposin, activator prote 1e-12
2qyp_A91 Proactivator polypeptide; saposin, activator prote 2e-11
2gtg_A83 Proactivator polypeptide; saposin, sphingolipid ac 2e-12
2gtg_A83 Proactivator polypeptide; saposin, sphingolipid ac 8e-11
4ddj_A83 Saposin-A, protein A; saposin fold, sphingolipid a 2e-11
4ddj_A83 Saposin-A, protein A; saposin fold, sphingolipid a 2e-07
1t6e_X381 Xylanase inhibitor; two beta-barrel domain structu 4e-11
3vla_A413 EDGP; extracellular, inhibitor, plant protein; HET 1e-10
1nkl_A78 NK-lysin; saposin fold, antibacterial peptide, tum 4e-08
1nkl_A78 NK-lysin; saposin fold, antibacterial peptide, tum 2e-05
1n69_A81 Saposin B; lipid binding protein, glycosphingolipi 4e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-05
>1qdm_A Prophytepsin; aspartic proteinases, saposin-like domain, zymogen structure, hydrolase; 2.30A {Hordeum vulgare} SCOP: a.64.1.2 b.50.1.2 Length = 478 Back     alignment and structure
 Score =  594 bits (1533), Expect = 0.0
 Identities = 336/457 (73%), Positives = 382/457 (83%), Gaps = 6/457 (1%)

Query: 31  VRIGLKKMKLDPNNRLAARLESEHGEALRASVKKYGFPNNLRDSEDTDIVALKNYMDAQY 90
           VRI LKK  +D N+R+A  L     +            N LR  E+ DIVALKNYM+AQY
Sbjct: 1   VRIALKKRPIDRNSRVATGLSGGEEQP------LLSGANPLRSEEEGDIVALKNYMNAQY 54

Query: 91  YGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHSKYKSSQSSTYKKNGESASI 150
           +GEIG+GTPPQKFTVIFDTGSSNLWVPS  CYFS+ACY HS+YK+  SSTYKKNG+ A+I
Sbjct: 55  FGEIGVGTPPQKFTVIFDTGSSNLWVPSAKCYFSIACYLHSRYKAGASSTYKKNGKPAAI 114

Query: 151 QYGTGAIAGFFSYDSVKVGDLVVKDQEFIEATREPGVTFMVAKFDGILGLGFQEISVGNA 210
           QYGTG+IAG+FS DSV VGDLVVKDQEFIEAT+EPG+TF+VAKFDGILGLGF+EISVG A
Sbjct: 115 QYGTGSIAGYFSEDSVTVGDLVVKDQEFIEATKEPGITFLVAKFDGILGLGFKEISVGKA 174

Query: 211 VPVWYNMVKQGLIQDPVFSFWLNRNQQEDEGGEIVFGGVDPNHYKGKHTYVPVTQKGYWQ 270
           VPVWY M++QGL+ DPVFSFWLNR+  E EGGEI+FGG+DP HY G+HTYVPVTQKGYWQ
Sbjct: 175 VPVWYKMIEQGLVSDPVFSFWLNRHVDEGEGGEIIFGGMDPKHYVGEHTYVPVTQKGYWQ 234

Query: 271 FNMGDVLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVITMINHAIGASGVVSQQCKAVVE 330
           F+MGDVL+GGK TG+CAGGC+AIADSGTSLLAGPT +IT IN  IGA+GVVSQ+CK +V 
Sbjct: 235 FDMGDVLVGGKSTGFCAGGCAAIADSGTSLLAGPTAIITEINEKIGAAGVVSQECKTIVS 294

Query: 331 QYGQTILDLLLFEAHPKKICSQMGLCTFDGKRGVSMGIESVVDESNDKSSGVLNNAMCSA 390
           QYGQ ILDLLL E  PKKICSQ+GLCTFDG RGVS GI SVVD+   KS+G+  + MCSA
Sbjct: 295 QYGQQILDLLLAETQPKKICSQVGLCTFDGTRGVSAGIRSVVDDEPVKSNGLRADPMCSA 354

Query: 391 CEMAVVWMQNQLQQNQTQENILQYVNELCDRMPSPMGESAVDCGKLSSMPIVSFTIGGKV 450
           CEMAVVWMQNQL QN+TQ+ IL YVN+LC+R+PSPMGESAVDCG L SMP + FTIGGK 
Sbjct: 355 CEMAVVWMQNQLAQNKTQDLILDYVNQLCNRLPSPMGESAVDCGSLGSMPDIEFTIGGKK 414

Query: 451 FDLSPEEYILKVGEGPEAQCISGFTAMDVPPPRGPLW 487
           F L PEEYILKVGEG  AQCISGFTAMD+PPPRGPLW
Sbjct: 415 FALKPEEYILKVGEGAAAQCISGFTAMDIPPPRGPLW 451
>1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2 Length = 239 Back     alignment and structure
>1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens} Length = 351 Back     alignment and structure
>1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens} Length = 351 Back     alignment and structure
>2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex, vasoconstrictor, glycoprotein, hypertension, serpins; 4.33A {Homo sapiens} Length = 383 Back     alignment and structure
>2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex, vasoconstrictor, glycoprotein, hypertension, serpins; 4.33A {Homo sapiens} Length = 383 Back     alignment and structure
>1htr_B Gastricsin; aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_A Length = 329 Back     alignment and structure
>1htr_B Gastricsin; aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_A Length = 329 Back     alignment and structure
>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A Length = 323 Back     alignment and structure
>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A Length = 323 Back     alignment and structure
>1dpj_A Proteinase A; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: b.50.1.2 PDB: 1dp5_A* 1fmu_A* 1fmx_A* 1fq5_A* 1fq4_A* 1fq6_A* 1fq7_A* 1fq8_A* 2jxr_A* 1g0v_A* Length = 329 Back     alignment and structure
>1dpj_A Proteinase A; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: b.50.1.2 PDB: 1dp5_A* 1fmu_A* 1fmx_A* 1fq5_A* 1fq4_A* 1fq6_A* 1fq7_A* 1fq8_A* 2jxr_A* 1g0v_A* Length = 329 Back     alignment and structure
>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa} SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A* 1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E* 3utl_A Length = 370 Back     alignment and structure
>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa} SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A* 1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E* 3utl_A Length = 370 Back     alignment and structure
>1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus morhua} SCOP: b.50.1.2 Length = 324 Back     alignment and structure
>1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus morhua} SCOP: b.50.1.2 Length = 324 Back     alignment and structure
>3k1w_A Renin; protease, alternative splicing, aspartyl protease, cleavage on PAIR of basic residues, disease mutation, disulfide bond, glycoprotein; HET: BFX NDG HSQ; 1.50A {Homo sapiens} PDB: 3d91_A* 3g70_A* 3g6z_A* 3own_A* 2iko_A* 1bbs_A* 1rne_A* 2bkt_A* 2bks_A* 2iku_A* 2il2_A* 2ren_A* 2v0z_C* 2v10_C* 2v11_C* 2v12_C* 2v13_A* 2v16_C* 3g72_A* 3oot_A* ... Length = 341 Back     alignment and structure
>3k1w_A Renin; protease, alternative splicing, aspartyl protease, cleavage on PAIR of basic residues, disease mutation, disulfide bond, glycoprotein; HET: BFX NDG HSQ; 1.50A {Homo sapiens} PDB: 3d91_A* 3g70_A* 3g6z_A* 3own_A* 2iko_A* 1bbs_A* 1rne_A* 2bkt_A* 2bks_A* 2iku_A* 2il2_A* 2ren_A* 2v0z_C* 2v10_C* 2v11_C* 2v12_C* 2v13_A* 2v16_C* 3g72_A* 3oot_A* ... Length = 341 Back     alignment and structure
>2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl protease, glycoprotein, hydrolase, signal, zymogen; HET: IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB: 1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A* 1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A* 2igy_A* 2r9b_A 3f9q_A 3qrv_A 3qs1_A* 2anl_A* ... Length = 453 Back     alignment and structure
>2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl protease, glycoprotein, hydrolase, signal, zymogen; HET: IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB: 1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A* 1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A* 2igy_A* 2r9b_A 3f9q_A 3qrv_A 3qs1_A* 2anl_A* ... Length = 453 Back     alignment and structure
>3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A {Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A* 3fnu_A* Length = 451 Back     alignment and structure
>3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A {Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A* 3fnu_A* Length = 451 Back     alignment and structure
>1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase; 2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A* Length = 375 Back     alignment and structure
>1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase; 2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A* Length = 375 Back     alignment and structure
>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A* Length = 361 Back     alignment and structure
>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A* Length = 361 Back     alignment and structure
>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A Length = 325 Back     alignment and structure
>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A Length = 325 Back     alignment and structure
>2ewy_A Beta-secretase 2; BACE2, aspartic protease, hydrolase; HET: DBO; 3.10A {Homo sapiens} Length = 383 Back     alignment and structure
>2ewy_A Beta-secretase 2; BACE2, aspartic protease, hydrolase; HET: DBO; 3.10A {Homo sapiens} Length = 383 Back     alignment and structure
>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG; 1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A* Length = 330 Back     alignment and structure
>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG; 1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A* Length = 330 Back     alignment and structure
>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A* Length = 329 Back     alignment and structure
>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A* Length = 329 Back     alignment and structure
>3lpj_A Beta-secretase 1; alzheimer'S, aspartyl protease, hydrolase; HET: TLA Z75; 1.79A {Homo sapiens} PDB: 3lpi_A* 3lpk_A* 3ohf_A* 3ohh_A* 3r2f_A* 3skf_A* 3skg_A* 2hiz_A* 2p83_A* 2va7_A* 2va5_A* 2va6_A* Length = 455 Back     alignment and structure
>3lpj_A Beta-secretase 1; alzheimer'S, aspartyl protease, hydrolase; HET: TLA Z75; 1.79A {Homo sapiens} PDB: 3lpi_A* 3lpk_A* 3ohf_A* 3ohh_A* 3r2f_A* 3skf_A* 3skg_A* 2hiz_A* 2p83_A* 2va7_A* 2va5_A* 2va6_A* Length = 455 Back     alignment and structure
>2qp8_A Beta-secretase 1; BACE1, protease, alternative splicing, aspartyl protease, glycoprotein, hydrolase, membrane, transmembrane, zymogen; HET: TAR SC7; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 2qk5_A* 2qmf_A* 2qmg_A* 2qmd_A* 4djx_A* 3l59_A* 3l5b_A* 3l5c_A* 3l58_A* 3l5d_A* 3l5f_A* 4dju_A* 4djv_A* 4djw_A* 3l5e_A* 4djy_A* 2zhv_A 2zhs_A 2zhr_A 2zhu_A ... Length = 395 Back     alignment and structure
>2qp8_A Beta-secretase 1; BACE1, protease, alternative splicing, aspartyl protease, glycoprotein, hydrolase, membrane, transmembrane, zymogen; HET: TAR SC7; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 2qk5_A* 2qmf_A* 2qmg_A* 2qmd_A* 4djx_A* 3l59_A* 3l5b_A* 3l5c_A* 3l58_A* 3l5d_A* 3l5f_A* 4dju_A* 4djv_A* 4djw_A* 3l5e_A* 4djy_A* 2zhv_A 2zhs_A 2zhr_A 2zhu_A ... Length = 395 Back     alignment and structure
>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ... Length = 329 Back     alignment and structure
>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ... Length = 329 Back     alignment and structure
>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2 Length = 340 Back     alignment and structure
>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2 Length = 340 Back     alignment and structure
>3pvk_A Candidapepsin-2; hydrolase; 1.27A {Candida albicans} PDB: 1eag_A 3q70_A* 1zap_A* 2qzw_A 2h6t_A* 2h6s_A* Length = 342 Back     alignment and structure
>3pvk_A Candidapepsin-2; hydrolase; 1.27A {Candida albicans} PDB: 1eag_A 3q70_A* 1zap_A* 2qzw_A 2h6t_A* 2h6s_A* Length = 342 Back     alignment and structure
>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2 Length = 334 Back     alignment and structure
>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2 Length = 334 Back     alignment and structure
>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} PDB: 3tne_A* Length = 339 Back     alignment and structure
>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} PDB: 3tne_A* Length = 339 Back     alignment and structure
>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of basic residues, glycoprotein, protease, secreted; HET: STA; 2.50A {Candida albicans} Length = 342 Back     alignment and structure
>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of basic residues, glycoprotein, protease, secreted; HET: STA; 2.50A {Candida albicans} Length = 342 Back     alignment and structure
>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2 Length = 325 Back     alignment and structure
>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2 Length = 325 Back     alignment and structure
>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A* Length = 323 Back     alignment and structure
>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A* Length = 323 Back     alignment and structure
>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A Length = 323 Back     alignment and structure
>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A Length = 323 Back     alignment and structure
>1lya_B Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_B* 1lyw_B* Length = 241 Back     alignment and structure
>1lya_B Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_B* 1lyw_B* Length = 241 Back     alignment and structure
>1lya_A Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_A* 1lyw_A* Length = 97 Back     alignment and structure
>3rfi_A Asp; PSI, saposin, hydrolase; 1.90A {Solanum tuberosum} Length = 108 Back     alignment and structure
>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max} Length = 403 Back     alignment and structure
>1b5f_B Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2 Length = 87 Back     alignment and structure
>3bqp_A Proactivator polypeptide; saposin, sphingolipid activator protein, lipid binding protein, acid ceramidase,farber disease, lipid metabolism; 1.30A {Homo sapiens} PDB: 3bqq_C 2rb3_A 2r1q_A 2r0r_A Length = 80 Back     alignment and structure
>3bqp_A Proactivator polypeptide; saposin, sphingolipid activator protein, lipid binding protein, acid ceramidase,farber disease, lipid metabolism; 1.30A {Homo sapiens} PDB: 3bqq_C 2rb3_A 2r1q_A 2r0r_A Length = 80 Back     alignment and structure
>2qyp_A Proactivator polypeptide; saposin, activator protein, alternative splicing, disease mutation, gaucher disease, glycoprotein, GM2- gangliosidosis; 2.45A {Homo sapiens} SCOP: a.64.1.1 PDB: 2z9a_A Length = 91 Back     alignment and structure
>2qyp_A Proactivator polypeptide; saposin, activator protein, alternative splicing, disease mutation, gaucher disease, glycoprotein, GM2- gangliosidosis; 2.45A {Homo sapiens} SCOP: a.64.1.1 PDB: 2z9a_A Length = 91 Back     alignment and structure
>2gtg_A Proactivator polypeptide; saposin, sphingolipid activator protein, lipid-binding prote binding protein; 2.40A {Homo sapiens} SCOP: a.64.1.1 PDB: 1m12_A 1sn6_A Length = 83 Back     alignment and structure
>2gtg_A Proactivator polypeptide; saposin, sphingolipid activator protein, lipid-binding prote binding protein; 2.40A {Homo sapiens} SCOP: a.64.1.1 PDB: 1m12_A 1sn6_A Length = 83 Back     alignment and structure
>4ddj_A Saposin-A, protein A; saposin fold, sphingolipid activator protein, galactosylcera lauryldimethylamine-N-oxide, lipid, detergent, lysosome; HET: LDA; 1.90A {Homo sapiens} PDB: 2dob_A* Length = 83 Back     alignment and structure
>4ddj_A Saposin-A, protein A; saposin fold, sphingolipid activator protein, galactosylcera lauryldimethylamine-N-oxide, lipid, detergent, lysosome; HET: LDA; 1.90A {Homo sapiens} PDB: 2dob_A* Length = 83 Back     alignment and structure
>1t6e_X Xylanase inhibitor; two beta-barrel domain structure, hydrolase inhibitor; 1.70A {Triticum aestivum} SCOP: b.50.1.2 PDB: 1t6g_A 2b42_A 3hd8_A Length = 381 Back     alignment and structure
>3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A {Daucus carota} PDB: 3vlb_A Length = 413 Back     alignment and structure
>1nkl_A NK-lysin; saposin fold, antibacterial peptide, tumourolytic peptide; NMR {Sus scrofa} SCOP: a.64.1.1 Length = 78 Back     alignment and structure
>1nkl_A NK-lysin; saposin fold, antibacterial peptide, tumourolytic peptide; NMR {Sus scrofa} SCOP: a.64.1.1 Length = 78 Back     alignment and structure
>1n69_A Saposin B; lipid binding protein, glycosphingolipid activator protein; HET: PEH; 2.20A {Homo sapiens} SCOP: a.64.1.3 Length = 81 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query491
1qdm_A478 Prophytepsin; aspartic proteinases, saposin-like d 100.0
3psg_A370 Pepsinogen; hydrolase(acid proteinase zymogen); 1. 100.0
2x0b_A383 Renin; hydrolase-hormone complex, hydrolase hormon 100.0
1tzs_A351 Cathepsin E; hydrolase, aspartic protease, activat 100.0
1dpj_A329 Proteinase A; proteinase A, hydrolase-hydrolase in 100.0
3k1w_A341 Renin; protease, alternative splicing, aspartyl pr 100.0
3cms_A323 Chymosin B; hydrolase, acid proteinase; 2.00A {Bos 100.0
1am5_A324 Pepsin, acid proteinase; aspartyl protease, hydrol 100.0
1htr_B329 Gastricsin; aspartyl protease; 1.62A {Homo sapiens 100.0
4aa9_A320 Chymosin; hydrolase, aspartic peptidase, rennet; H 100.0
1miq_A375 Plasmepsin; aspartic proteinase zymogen, domain op 100.0
3qvc_A451 Histo-aspartic protease; HAP, plasmepsin, zymogen, 100.0
2bju_A453 Plasmepsin II; aspartic proteinase, drug design, m 100.0
1mpp_A361 Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomu 100.0
1yg9_A330 Aspartic protease BLA G 2; allegren, hydrolase, al 100.0
3c9x_A329 Trichoderma reesei aspartic protease; aspartic pro 100.0
2apr_A325 Rhizopuspepsin; hydrolase (aspartic proteinase); 1 100.0
1oew_A329 Endothiapepsin; hydrolase, aspartic proteinase mec 100.0
3fv3_A339 SAPP1P-secreted aspartic protease 1; secreted aspa 100.0
1j71_A334 Candidapepsin, aspartic proteinase; candida tropic 100.0
2qzx_A342 Candidapepsin-5; aspartic proteinase, aspartyl pro 100.0
1izd_A323 Aspartic proteinase; sugar binding, acid protease, 100.0
1ibq_A325 Aspergillopepsin; aspartic proteinase, hydrolase; 100.0
3pvk_A342 Candidapepsin-2; hydrolase; 1.27A {Candida albican 100.0
1b5f_A239 Protein (cardosin A); hydrolase, aspartic proteina 100.0
1wkr_A340 Polyporopepsin; hydrolase, hydrolase-hydrolase inh 100.0
1bxo_A323 Protein (penicillopepsin); hydrolase, phosphonate 100.0
3lpj_A455 Beta-secretase 1; alzheimer'S, aspartyl protease, 100.0
2ewy_A383 Beta-secretase 2; BACE2, aspartic protease, hydrol 100.0
3vf3_A402 Beta-secretase 1; structure-based drug design, hyd 100.0
2qp8_A395 Beta-secretase 1; BACE1, protease, alternative spl 100.0
3aup_A403 SBG7S, BG, basic 7S globulin; pepsin-like fold, pl 100.0
3vla_A413 EDGP; extracellular, inhibitor, plant protein; HET 100.0
1t6e_X381 Xylanase inhibitor; two beta-barrel domain structu 100.0
1lya_B241 Cathepsin D; lysosomal aspartic protease; HET: NAG 100.0
1lya_A97 Cathepsin D; lysosomal aspartic protease; HET: NAG 99.89
3rfi_A108 Asp; PSI, saposin, hydrolase; 1.90A {Solanum tuber 99.67
1b5f_B87 Protein (cardosin A); hydrolase, aspartic proteina 99.1
2qyp_A91 Proactivator polypeptide; saposin, activator prote 97.94
3bqp_A80 Proactivator polypeptide; saposin, sphingolipid ac 97.84
1l9l_A74 Granulysin; saposin fold, membrane-lytic, antimicr 97.82
4ddj_A83 Saposin-A, protein A; saposin fold, sphingolipid a 97.76
2gtg_A83 Proactivator polypeptide; saposin, sphingolipid ac 97.57
1nkl_A78 NK-lysin; saposin fold, antibacterial peptide, tum 97.55
1of9_A77 Pore-forming peptide ameobapore A; toxin, saplip, 97.55
1n69_A81 Saposin B; lipid binding protein, glycosphingolipi 97.34
2js9_A99 Saposin-like protein family protein 5; caenopore-5 97.25
2i1a_A148 DNA damage-inducible protein DDI1; acid protease f 94.01
2qyp_A91 Proactivator polypeptide; saposin, activator prote 93.81
3bqp_A80 Proactivator polypeptide; saposin, sphingolipid ac 92.58
1nkl_A78 NK-lysin; saposin fold, antibacterial peptide, tum 90.65
1of9_A77 Pore-forming peptide ameobapore A; toxin, saplip, 90.42
2gtg_A83 Proactivator polypeptide; saposin, sphingolipid ac 90.37
2js9_A99 Saposin-like protein family protein 5; caenopore-5 90.23
3s8i_A148 Protein DDI1 homolog 1; protease, structural genom 89.81
1n69_A81 Saposin B; lipid binding protein, glycosphingolipi 89.19
4ddj_A83 Saposin-A, protein A; saposin fold, sphingolipid a 87.3
3s64_A87 AC-SLP-1, saposin-like protein 1; lipid-binding, l 83.31
2hs1_A99 HIV-1 protease; ultra-high resolution active site 80.23
1l9l_A74 Granulysin; saposin fold, membrane-lytic, antimicr 80.14
>1qdm_A Prophytepsin; aspartic proteinases, saposin-like domain, zymogen structure, hydrolase; 2.30A {Hordeum vulgare} SCOP: a.64.1.2 b.50.1.2 Back     alignment and structure
Probab=100.00  E-value=6.2e-80  Score=651.76  Aligned_cols=453  Identities=74%  Similarity=1.274  Sum_probs=377.8

Q ss_pred             EEEeeeecCCChhhhhhhcchhhhhHHHHhhhhccCCCCCCCCCCCcceeeeeecCCceEEEEEEEcCCCceEEEEEeCC
Q 011190           31 VRIGLKKMKLDPNNRLAARLESEHGEALRASVKKYGFPNNLRDSEDTDIVALKNYMDAQYYGEIGIGTPPQKFTVIFDTG  110 (491)
Q Consensus        31 ~~ipl~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~n~~~~~Y~~~i~iGtP~Q~~~v~lDTG  110 (491)
                      +||||+|++..++.+.+.+......+.+   .+++.   ..++..+...+||.|+.+.+|+++|+||||||++.|+||||
T Consensus         1 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~---~~~~~~~~~~~~l~n~~~~~Y~~~i~IGTP~Q~~~v~~DTG   74 (478)
T 1qdm_A            1 VRIALKKRPIDRNSRVATGLSGGEEQPL---LSGAN---PLRSEEEGDIVALKNYMNAQYFGEIGVGTPPQKFTVIFDTG   74 (478)
T ss_dssp             CEEEEEECCCCHHHHHHHHTC----------------------CCSSCSGGGCCGGGCCEEEEEEETTTTEEEEEEEETT
T ss_pred             CeeeeeeccchHHHHHhcchhhhhHHHH---Hhhcc---cccCcCCCceEEeEeccCCEEEEEEEECCCCeEEEEEEcCC
Confidence            4899999999998887765432211101   11111   01122245669999999999999999999999999999999


Q ss_pred             CCceeeeCCCCCCCccccCCCCCCCCCCCcceecCceEEEEecCceEEEEEEEEEEEECcEeecccEEEEEEecCCcccc
Q 011190          111 SSNLWVPSTNCYFSVACYFHSKYKSSQSSTYKKNGESASIQYGTGAIAGFFSYDSVKVGDLVVKDQEFIEATREPGVTFM  190 (491)
Q Consensus       111 Ss~lWV~~~~C~~~~~C~~~~~f~p~~SsT~~~~~~~~~~~Yg~gs~~G~~~~D~v~ig~~~i~~~~fg~~~~~~~~~~~  190 (491)
                      |+++||++..|..+..|..|+.|+|++|+||+..++.|.+.|++|+++|.+++|+|++|+..++++.||++....+..|.
T Consensus        75 Ss~lWV~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs~~G~~~~Dtv~ig~~~v~~~~Fg~a~~~~~~~f~  154 (478)
T 1qdm_A           75 SSNLWVPSAKCYFSIACYLHSRYKAGASSTYKKNGKPAAIQYGTGSIAGYFSEDSVTVGDLVVKDQEFIEATKEPGITFL  154 (478)
T ss_dssp             CCCCEEEBTTCCSCGGGGGSCCBCGGGCTTCBCCCCEEEEEETTEEEEEEEEEEEEEETTEEEEEEEEEEEEECCBSHHH
T ss_pred             CcceEEecCCCCCCccccCCCCCCcccCCCeeeCCcEEEEEcCCCCeEEEEEEEEEEECCeEECCEEEEEEEecCCcccc
Confidence            99999999999645689999999999999999999999999999999999999999999999999999999987665566


Q ss_pred             cccccccccCccccccCCCCcchHHHHHHcCCCCCCeEEEEeCCCCCCCCCeeEEECccCCCCCccceeEEeecccceeE
Q 011190          191 VAKFDGILGLGFQEISVGNAVPVWYNMVKQGLIQDPVFSFWLNRNQQEDEGGEIVFGGVDPNHYKGKHTYVPVTQKGYWQ  270 (491)
Q Consensus       191 ~~~~~GIlGLg~~~~s~~~~~~~~~~L~~~g~i~~~~FSl~l~~~~~~~~~G~L~fGgiD~~~~~G~l~~~pv~~~~~w~  270 (491)
                      ...++||||||++..+.....|++++|++||+|++++||+||.+..+....|+|+|||+|+++|.|++.|+|+...++|.
T Consensus       155 ~~~~dGIlGLg~~~~s~~~~~p~~~~l~~qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~~~G~l~~~pv~~~~~w~  234 (478)
T 1qdm_A          155 VAKFDGILGLGFKEISVGKAVPVWYKMIEQGLVSDPVFSFWLNRHVDEGEGGEIIFGGMDPKHYVGEHTYVPVTQKGYWQ  234 (478)
T ss_dssp             HCSSSEEEECSCGGGCGGGCCCHHHHHTTTTCCSSSEEEEECCCC-----CEEEEETCCCTTSEEEEEEEEEEEEETTEE
T ss_pred             cccccceecccccccccCCCCcHHHHHHHCCCCCCCEEEEEeecCCCCCCCeEEEeCCcCHhhcCCCceEEeccCCCeEE
Confidence            67789999999998887777889999999999999999999988643334899999999999999999999999889999


Q ss_pred             EEEeeEEECCeeceeecCCceEEEcCCCCcccccHHHHHHHHHHhCCCceeecccchhhhccchhhhhhhhhccCccccc
Q 011190          271 FNMGDVLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVITMINHAIGASGVVSQQCKAVVEQYGQTILDLLLFEAHPKKIC  350 (491)
Q Consensus       271 v~l~~i~vgg~~~~~~~~~~~aiiDTGTt~i~lP~~~~~~l~~~l~a~~~~~~~C~~~~~~~g~~~i~~~~~~~~~~~~~  350 (491)
                      |.+++|.|+++.+.++..+..+||||||+++++|.+++++|.+++++.+.++.+|+..+.+||+.++++++++++|+.+|
T Consensus       235 v~l~~i~v~g~~~~~~~~~~~aiiDTGTs~~~lP~~~~~~i~~~i~a~~~~s~~Ck~~v~~yg~~ii~~l~~~~~p~~vC  314 (478)
T 1qdm_A          235 FDMGDVLVGGKSTGFCAGGCAAIADSGTSLLAGPTAIITEINEKIGAAGVVSQECKTIVSQYGQQILDLLLAETQPKKIC  314 (478)
T ss_dssp             EEECCEEETTEECSTTTTCEEEEECSSCCSEEECHHHHHHHHHHHTCCCBCCHHHHHHHHHTHHHHHHHHHTTCCHHHHH
T ss_pred             EEEeEEEECCEEEeecCCCceEEEcCCCCceeCCHHHHHHHHHHhCccccccccccchhhhhhhHHHHhhhhccChhhhh
Confidence            99999999999876666778999999999999999999999999999998999999999999999999999999999999


Q ss_pred             ccCcccccCCCccccccccccccccCccccCccCcccchhhHHHHHHHHHHhhhchhHHHHHHHHHhhhccCCCCCCcee
Q 011190          351 SQMGLCTFDGKRGVSMGIESVVDESNDKSSGVLNNAMCSACEMAVVWMQNQLQQNQTQENILQYVNELCDRMPSPMGESA  430 (491)
Q Consensus       351 ~~~g~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  430 (491)
                      +.+|+|..+++...++...+++++++++++...++..|.+|||++.|++++|.+|.|+|+|+++++++|.++|...|.|.
T Consensus       315 ~~iglC~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~C~~Ce~~v~~~~~~l~~n~t~~~I~~~~~~~C~~~~~~~g~~~  394 (478)
T 1qdm_A          315 SQVGLCTFDGTRGVSAGIRSVVDDEPVKSNGLRADPMCSACEMAVVWMQNQLAQNKTQDLILDYVNQLCNRLPSPMGESA  394 (478)
T ss_dssp             HHTTCC---------------------------CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTCBCCSSSCCE
T ss_pred             ccccccccCccccccccccccccccccccccccccccchHHHHHHHHHHHHHhccccHHHHHHHHHHHhhccCCCCCeEE
Confidence            99999999999888899999999998888889999999999999999999999999999999999999999999999999


Q ss_pred             ecCcCCCCCCcEEEEECCEEEeeCcCccEEEeCCCCcceeeeceeeccCCCCCCCeeEE
Q 011190          431 VDCGKLSSMPIVSFTIGGKVFDLSPEEYILKVGEGPEAQCISGFTAMDVPPPRGPLWYS  489 (491)
Q Consensus       431 ~~C~~~~~~p~i~f~~~g~~~~l~~~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~  489 (491)
                      ++|+.++.+|.|+|+|+|+.|+|+|++|+++.++++...|+++|+++|+|++.++.||-
T Consensus       395 v~C~~~~~lP~i~f~~gg~~~~l~p~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~IL  453 (478)
T 1qdm_A          395 VDCGSLGSMPDIEFTIGGKKFALKPEEYILKVGEGAAAQCISGFTAMDIPPPRGPLWIL  453 (478)
T ss_dssp             ECGGGGTTCCCEEEEETTEEEEECHHHHEEECSCGGGCCEEESEEECCCCTTSCSEEEE
T ss_pred             eecccccccccEEEEECCEEEEEChHHhEEEccCCCCCeEEEEEEeccCCCCCCCcEEE
Confidence            99999999999999999999999999999998765457899999999999888999984
>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa} SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A* 1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E* 3utl_A Back     alignment and structure
>2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex, vasoconstrictor, glycoprotein, hypertension, serpins; 4.33A {Homo sapiens} Back     alignment and structure
>1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens} Back     alignment and structure
>1dpj_A Proteinase A; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: b.50.1.2 PDB: 1dp5_A* 1fmu_A* 1fmx_A* 1fq5_A* 1fq4_A* 1fq6_A* 1fq7_A* 1fq8_A* 2jxr_A* 1g0v_A* Back     alignment and structure
>3k1w_A Renin; protease, alternative splicing, aspartyl protease, cleavage on PAIR of basic residues, disease mutation, disulfide bond, glycoprotein; HET: BFX NDG HSQ; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 3d91_A* 3g70_A* 3g6z_A* 3own_A* 2iko_A* 1bbs_A* 1rne_A* 2bkt_A* 2bks_A* 2iku_A* 2il2_A* 2ren_A* 2v0z_C* 2v10_C* 2v11_C* 2v12_C* 2v13_A* 2v16_C* 3g72_A* 3oot_A* ... Back     alignment and structure
>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A Back     alignment and structure
>1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus morhua} SCOP: b.50.1.2 Back     alignment and structure
>1htr_B Gastricsin; aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_A Back     alignment and structure
>4aa9_A Chymosin; hydrolase, aspartic peptidase, rennet; HET: NAG; 1.60A {Camelus dromedarius} PDB: 4aa8_A 1czi_E* 1cms_A 4cms_A 3cms_A Back     alignment and structure
>1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase; 2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A* Back     alignment and structure
>3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A {Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A* 3fnu_A* Back     alignment and structure
>2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl protease, glycoprotein, hydrolase, signal, zymogen; HET: IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB: 1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A* 1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A* 2igy_A* 2r9b_A 3f9q_A 3qrv_A 3qs1_A* 2anl_A* ... Back     alignment and structure
>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A* Back     alignment and structure
>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG; 1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A* Back     alignment and structure
>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A* Back     alignment and structure
>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A Back     alignment and structure
>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ... Back     alignment and structure
>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} SCOP: b.50.1.0 PDB: 3tne_A* Back     alignment and structure
>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2 Back     alignment and structure
>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of basic residues, glycoprotein, protease, secreted; HET: STA; 2.50A {Candida albicans} Back     alignment and structure
>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A* Back     alignment and structure
>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2 Back     alignment and structure
>3pvk_A Candidapepsin-2; hydrolase; 1.27A {Candida albicans} SCOP: b.50.1.2 PDB: 1eag_A 3q70_A* 1zap_A* 2qzw_A 2h6t_A* 2h6s_A* Back     alignment and structure
>1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2 Back     alignment and structure
>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2 Back     alignment and structure
>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A Back     alignment and structure
>3lpj_A Beta-secretase 1; alzheimer'S, aspartyl protease, hydrolase; HET: TLA Z75; 1.79A {Homo sapiens} PDB: 3lpi_A* 3lpk_A* 3ohf_A* 3ohh_A* 3r2f_A* 3skf_A* 3skg_A* 4fse_A* 2hiz_A* 2p83_A* 2va7_A* 2va5_A* 2va6_A* Back     alignment and structure
>2ewy_A Beta-secretase 2; BACE2, aspartic protease, hydrolase; HET: DBO; 3.10A {Homo sapiens} Back     alignment and structure
>3vf3_A Beta-secretase 1; structure-based drug design, hydrolase-hydrolase inhibitor C; HET: 0GS; 1.48A {Homo sapiens} PDB: 2f3e_A* 2f3f_A* 1ym2_A* 3dv1_A* 3dv5_A* 3k5c_A* 3k5f_A* 3k5g_A* 3pi5_A* 3qbh_A* 3duy_A* 3veu_A* 3vg1_A* 4d83_A* 4d88_A* 4d89_A* 4d8c_A* 3msk_A* 3k5d_A* 1ym4_A* ... Back     alignment and structure
>2qp8_A Beta-secretase 1; BACE1, protease, alternative splicing, aspartyl protease, glycoprotein, hydrolase, membrane, transmembrane, zymogen; HET: TAR SC7; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 2qk5_A* 2qmf_A* 2qmg_A* 2qmd_A* 4djx_A* 3l59_A* 3l5b_A* 3l5c_A* 3l58_A* 3l5d_A* 3l5f_A* 4dju_A* 4djv_A* 4djw_A* 3l5e_A* 4djy_A* 2zhv_A 2zhs_A 2zhr_A 2zhu_A ... Back     alignment and structure
>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max} Back     alignment and structure
>3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A {Daucus carota} PDB: 3vlb_A Back     alignment and structure
>1t6e_X Xylanase inhibitor; two beta-barrel domain structure, hydrolase inhibitor; 1.70A {Triticum aestivum} SCOP: b.50.1.2 PDB: 1t6g_A 2b42_A 3hd8_A Back     alignment and structure
>1lya_B Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_B* 1lyw_B* Back     alignment and structure
>1lya_A Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_A* 1lyw_A* Back     alignment and structure
>3rfi_A Asp; PSI, saposin, hydrolase; 1.90A {Solanum tuberosum} Back     alignment and structure
>1b5f_B Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2 Back     alignment and structure
>2qyp_A Proactivator polypeptide; saposin, activator protein, alternative splicing, disease mutation, gaucher disease, glycoprotein, GM2- gangliosidosis; 2.45A {Homo sapiens} SCOP: a.64.1.1 PDB: 2z9a_A Back     alignment and structure
>3bqp_A Proactivator polypeptide; saposin, sphingolipid activator protein, lipid binding protein, acid ceramidase,farber disease, lipid metabolism; 1.30A {Homo sapiens} PDB: 3bqq_C 2rb3_A 2r1q_A 2r0r_A Back     alignment and structure
>1l9l_A Granulysin; saposin fold, membrane-lytic, antimicrobial protein; HET: MPO; 0.92A {Homo sapiens} SCOP: a.64.1.1 Back     alignment and structure
>4ddj_A Saposin-A, protein A; saposin fold, sphingolipid activator protein, galactosylcera lauryldimethylamine-N-oxide, lipid, detergent, lysosome; HET: LDA; 1.90A {Homo sapiens} PDB: 2dob_A* Back     alignment and structure
>2gtg_A Proactivator polypeptide; saposin, sphingolipid activator protein, lipid-binding prote binding protein; 2.40A {Homo sapiens} SCOP: a.64.1.1 PDB: 1m12_A 1sn6_A Back     alignment and structure
>1nkl_A NK-lysin; saposin fold, antibacterial peptide, tumourolytic peptide; NMR {Sus scrofa} SCOP: a.64.1.1 Back     alignment and structure
>1of9_A Pore-forming peptide ameobapore A; toxin, saplip, amoebapore A; NMR {Entamoeba histolytica} SCOP: a.64.1.4 Back     alignment and structure
>1n69_A Saposin B; lipid binding protein, glycosphingolipid activator protein; HET: PEH; 2.20A {Homo sapiens} SCOP: a.64.1.3 Back     alignment and structure
>2js9_A Saposin-like protein family protein 5; caenopore-5, saposin-like fold, antimicrobial protein; NMR {Caenorhabditis elegans} PDB: 2jsa_A Back     alignment and structure
>2i1a_A DNA damage-inducible protein DDI1; acid protease fold, dimer, retroviral protease domain, protein turnover; HET: DNA; 2.30A {Saccharomyces cerevisiae} Back     alignment and structure
>2qyp_A Proactivator polypeptide; saposin, activator protein, alternative splicing, disease mutation, gaucher disease, glycoprotein, GM2- gangliosidosis; 2.45A {Homo sapiens} SCOP: a.64.1.1 PDB: 2z9a_A Back     alignment and structure
>3bqp_A Proactivator polypeptide; saposin, sphingolipid activator protein, lipid binding protein, acid ceramidase,farber disease, lipid metabolism; 1.30A {Homo sapiens} PDB: 3bqq_C 2rb3_A 2r1q_A 2r0r_A Back     alignment and structure
>1nkl_A NK-lysin; saposin fold, antibacterial peptide, tumourolytic peptide; NMR {Sus scrofa} SCOP: a.64.1.1 Back     alignment and structure
>1of9_A Pore-forming peptide ameobapore A; toxin, saplip, amoebapore A; NMR {Entamoeba histolytica} SCOP: a.64.1.4 Back     alignment and structure
>2gtg_A Proactivator polypeptide; saposin, sphingolipid activator protein, lipid-binding prote binding protein; 2.40A {Homo sapiens} SCOP: a.64.1.1 PDB: 1m12_A 1sn6_A Back     alignment and structure
>2js9_A Saposin-like protein family protein 5; caenopore-5, saposin-like fold, antimicrobial protein; NMR {Caenorhabditis elegans} PDB: 2jsa_A Back     alignment and structure
>3s8i_A Protein DDI1 homolog 1; protease, structural genomics, structural genomics consortiu retropepsin-like domain, protein turnover, hydrolase; 1.70A {Homo sapiens} Back     alignment and structure
>1n69_A Saposin B; lipid binding protein, glycosphingolipid activator protein; HET: PEH; 2.20A {Homo sapiens} SCOP: a.64.1.3 Back     alignment and structure
>4ddj_A Saposin-A, protein A; saposin fold, sphingolipid activator protein, galactosylcera lauryldimethylamine-N-oxide, lipid, detergent, lysosome; HET: LDA; 1.90A {Homo sapiens} PDB: 2dob_A* Back     alignment and structure
>3s64_A AC-SLP-1, saposin-like protein 1; lipid-binding, lipid binding protein; HET: CIT EPE; 2.30A {Ancylostoma caninum} Back     alignment and structure
>2hs1_A HIV-1 protease; ultra-high resolution active site surface binding site, HYDR; HET: 017; 0.84A {Human immunodeficiency virus 1} PDB: 3nu4_A* 3tl9_A* 3tkw_A* 3tkg_A* 3ndu_A* 3ndt_A* 3k4v_A* 3a2o_A* 1fgc_C* 2a1e_A* 2aod_A* 2aoi_A* 2aoj_A* 2hb3_A* 2ien_A* 1sdt_A* 2z4o_A* 2zye_A* 2nmw_A* 3b7v_A* ... Back     alignment and structure
>1l9l_A Granulysin; saposin fold, membrane-lytic, antimicrobial protein; HET: MPO; 0.92A {Homo sapiens} SCOP: a.64.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 491
d1qdma2337 b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase 4e-78
d1qdma2337 b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase 2e-13
g1htr.1372 b.50.1.2 (P:,B:) Pepsin(ogen) {Human (Homo sapiens 2e-74
g1htr.1372 b.50.1.2 (P:,B:) Pepsin(ogen) {Human (Homo sapiens 3e-08
d1dpja_329 b.50.1.2 (A:) Acid protease {Baker's yeast (Saccha 4e-73
d1dpja_329 b.50.1.2 (A:) Acid protease {Baker's yeast (Saccha 3e-09
g1b5f.1326 b.50.1.2 (A:,B:) Plant acid proteinase, phytepsin 1e-71
g1b5f.1326 b.50.1.2 (A:,B:) Plant acid proteinase, phytepsin 1e-10
d1smra_335 b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mu 1e-70
d1smra_335 b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mu 5e-11
d1hrna_337 b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Ho 4e-70
d1hrna_337 b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Ho 2e-10
d1am5a_324 b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus mo 1e-69
d1am5a_324 b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus mo 1e-07
d1mppa_357 b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840] 8e-69
g1lya.1338 b.50.1.2 (A:,B:) Cathepsin D {Human (Homo sapiens) 4e-67
g1lya.1338 b.50.1.2 (A:,B:) Cathepsin D {Human (Homo sapiens) 7e-11
d3psga_370 b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxI 4e-65
d3psga_370 b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxI 5e-11
d3cmsa_323 b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos 1e-63
d3cmsa_323 b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos 9e-06
d2qp8a1387 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Hum 1e-63
d2bjua1329 b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrad 1e-62
d2bjua1329 b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrad 3e-08
d1miqa_373 b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading e 9e-60
d1miqa_373 b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading e 6e-09
d1eaga_342 b.50.1.2 (A:) Acid protease {Yeast (Candida albica 4e-59
d2apra_325 b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus 7e-58
d2apra_325 b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus 4e-05
d1j71a_334 b.50.1.2 (A:) Acid protease {Yeast (Candida tropic 4e-57
d1wkra_340 b.50.1.2 (A:) Acid protease {Irpex lacteus (Polypo 4e-56
d1wkra_340 b.50.1.2 (A:) Acid protease {Irpex lacteus (Polypo 7e-05
d1oewa_330 b.50.1.2 (A:) Endothiapepsin {Chestnut blight fung 2e-55
d1oewa_330 b.50.1.2 (A:) Endothiapepsin {Chestnut blight fung 0.004
d1izea_323 b.50.1.2 (A:) Acid protease {Fungus (Aspergillus o 6e-48
d1bxoa_323 b.50.1.2 (A:) Acid protease {Fungus (Penicillium j 5e-43
d1qdma1104 a.64.1.2 (A:1S-104S) (Pro)phytepsin {Barley (Horde 5e-42
d1t6ex_381 b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Tr 2e-36
d1t6ex_381 b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Tr 3e-04
d1of9a_77 a.64.1.4 (A:) Ameobapore A {Entamoeba histolytica 3e-12
d1of9a_77 a.64.1.4 (A:) Ameobapore A {Entamoeba histolytica 2e-04
d2gtga178 a.64.1.1 (A:2-79) Saposin C {Human (Homo sapiens) 6e-12
d2gtga178 a.64.1.1 (A:2-79) Saposin C {Human (Homo sapiens) 5e-09
d1nkla_78 a.64.1.1 (A:) NK-lysin, NKL {Pig (Sus scrofa) [Tax 7e-12
d1nkla_78 a.64.1.1 (A:) NK-lysin, NKL {Pig (Sus scrofa) [Tax 2e-06
d1n69a_78 a.64.1.3 (A:) Saposin B {Human (Homo sapiens) [Tax 8e-07
d1n69a_78 a.64.1.3 (A:) Saposin B {Human (Homo sapiens) [Tax 3e-05
d1l9la_74 a.64.1.1 (A:) Granulysin, NKG5 protein {Human (Hom 2e-05
d1l9la_74 a.64.1.1 (A:) Granulysin, NKG5 protein {Human (Hom 2e-04
>d1qdma2 b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase, phytepsin {Barley (Hordeum vulgare) [TaxId: 4513]} Length = 337 Back     information, alignment and structure

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Plant acid proteinase, phytepsin
species: Barley (Hordeum vulgare) [TaxId: 4513]

 Score =  245 bits (626), Expect = 4e-78
 Identities = 194/244 (79%), Positives = 222/244 (90%)

Query: 75  EDTDIVALKNYMDAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTNCYFSVACYFHSKYK 134
           E+ DIVALKNYM+AQY+GEIG+GTPPQKFTVIFDTGSSNLWVPS  CYFS+ACY HS+YK
Sbjct: 2   EEGDIVALKNYMNAQYFGEIGVGTPPQKFTVIFDTGSSNLWVPSAKCYFSIACYLHSRYK 61

Query: 135 SSQSSTYKKNGESASIQYGTGAIAGFFSYDSVKVGDLVVKDQEFIEATREPGVTFMVAKF 194
           +  SSTYKKNG+ A+IQYGTG+IAG+FS DSV VGDLVVKDQEFIEAT+EPG+TF+VAKF
Sbjct: 62  AGASSTYKKNGKPAAIQYGTGSIAGYFSEDSVTVGDLVVKDQEFIEATKEPGITFLVAKF 121

Query: 195 DGILGLGFQEISVGNAVPVWYNMVKQGLIQDPVFSFWLNRNQQEDEGGEIVFGGVDPNHY 254
           DGILGLGF+EISVG AVPVWY M++QGL+ DPVFSFWLNR+  E EGGEI+FGG+DP HY
Sbjct: 122 DGILGLGFKEISVGKAVPVWYKMIEQGLVSDPVFSFWLNRHVDEGEGGEIIFGGMDPKHY 181

Query: 255 KGKHTYVPVTQKGYWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVITMINHA 314
            G+HTYVPVTQKGYWQF+MGDVL+GGK TG+CAGGC+AIADSGTSLLAGPT +IT IN  
Sbjct: 182 VGEHTYVPVTQKGYWQFDMGDVLVGGKSTGFCAGGCAAIADSGTSLLAGPTAIITEINEK 241

Query: 315 IGAS 318
           IGA+
Sbjct: 242 IGAA 245
>d1qdma2 b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase, phytepsin {Barley (Hordeum vulgare) [TaxId: 4513]} Length = 337 Back     information, alignment and structure
>d1dpja_ b.50.1.2 (A:) Acid protease {Baker's yeast (Saccharomyces cerevisiae), proteinase A [TaxId: 4932]} Length = 329 Back     information, alignment and structure
>d1dpja_ b.50.1.2 (A:) Acid protease {Baker's yeast (Saccharomyces cerevisiae), proteinase A [TaxId: 4932]} Length = 329 Back     information, alignment and structure
>d1smra_ b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mus musculus) [TaxId: 10090]} Length = 335 Back     information, alignment and structure
>d1smra_ b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mus musculus) [TaxId: 10090]} Length = 335 Back     information, alignment and structure
>d1hrna_ b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Homo sapiens) [TaxId: 9606]} Length = 337 Back     information, alignment and structure
>d1hrna_ b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Homo sapiens) [TaxId: 9606]} Length = 337 Back     information, alignment and structure
>d1am5a_ b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId: 8049]} Length = 324 Back     information, alignment and structure
>d1am5a_ b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId: 8049]} Length = 324 Back     information, alignment and structure
>d1mppa_ b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840]} Length = 357 Back     information, alignment and structure
>d3psga_ b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]} Length = 370 Back     information, alignment and structure
>d3psga_ b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]} Length = 370 Back     information, alignment and structure
>d3cmsa_ b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId: 9913]} Length = 323 Back     information, alignment and structure
>d3cmsa_ b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId: 9913]} Length = 323 Back     information, alignment and structure
>d2qp8a1 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Human (Homo sapiens) [TaxId: 9606]} Length = 387 Back     information, alignment and structure
>d2bjua1 b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium falciparum, plasmepsin II [TaxId: 5833]} Length = 329 Back     information, alignment and structure
>d2bjua1 b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium falciparum, plasmepsin II [TaxId: 5833]} Length = 329 Back     information, alignment and structure
>d1miqa_ b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium vivax [TaxId: 5855]} Length = 373 Back     information, alignment and structure
>d1miqa_ b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium vivax [TaxId: 5855]} Length = 373 Back     information, alignment and structure
>d1eaga_ b.50.1.2 (A:) Acid protease {Yeast (Candida albicans) [TaxId: 5476]} Length = 342 Back     information, alignment and structure
>d2apra_ b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus chinensis) [TaxId: 4843]} Length = 325 Back     information, alignment and structure
>d2apra_ b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus chinensis) [TaxId: 4843]} Length = 325 Back     information, alignment and structure
>d1j71a_ b.50.1.2 (A:) Acid protease {Yeast (Candida tropicalis) [TaxId: 5482]} Length = 334 Back     information, alignment and structure
>d1wkra_ b.50.1.2 (A:) Acid protease {Irpex lacteus (Polyporus tulipiferae), Polyporopepsin [TaxId: 5319]} Length = 340 Back     information, alignment and structure
>d1wkra_ b.50.1.2 (A:) Acid protease {Irpex lacteus (Polyporus tulipiferae), Polyporopepsin [TaxId: 5319]} Length = 340 Back     information, alignment and structure
>d1oewa_ b.50.1.2 (A:) Endothiapepsin {Chestnut blight fungus (Endothia parasitica) [TaxId: 5116]} Length = 330 Back     information, alignment and structure
>d1izea_ b.50.1.2 (A:) Acid protease {Fungus (Aspergillus oryzae) [TaxId: 5062]} Length = 323 Back     information, alignment and structure
>d1bxoa_ b.50.1.2 (A:) Acid protease {Fungus (Penicillium janthinellum), penicillopepsin [TaxId: 5079]} Length = 323 Back     information, alignment and structure
>d1qdma1 a.64.1.2 (A:1S-104S) (Pro)phytepsin {Barley (Hordeum vulgare) [TaxId: 4513]} Length = 104 Back     information, alignment and structure
>d1t6ex_ b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Triticum aestivum) [TaxId: 4565]} Length = 381 Back     information, alignment and structure
>d1t6ex_ b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Triticum aestivum) [TaxId: 4565]} Length = 381 Back     information, alignment and structure
>d1of9a_ a.64.1.4 (A:) Ameobapore A {Entamoeba histolytica [TaxId: 5759]} Length = 77 Back     information, alignment and structure
>d1of9a_ a.64.1.4 (A:) Ameobapore A {Entamoeba histolytica [TaxId: 5759]} Length = 77 Back     information, alignment and structure
>d2gtga1 a.64.1.1 (A:2-79) Saposin C {Human (Homo sapiens) [TaxId: 9606]} Length = 78 Back     information, alignment and structure
>d2gtga1 a.64.1.1 (A:2-79) Saposin C {Human (Homo sapiens) [TaxId: 9606]} Length = 78 Back     information, alignment and structure
>d1nkla_ a.64.1.1 (A:) NK-lysin, NKL {Pig (Sus scrofa) [TaxId: 9823]} Length = 78 Back     information, alignment and structure
>d1nkla_ a.64.1.1 (A:) NK-lysin, NKL {Pig (Sus scrofa) [TaxId: 9823]} Length = 78 Back     information, alignment and structure
>d1n69a_ a.64.1.3 (A:) Saposin B {Human (Homo sapiens) [TaxId: 9606]} Length = 78 Back     information, alignment and structure
>d1n69a_ a.64.1.3 (A:) Saposin B {Human (Homo sapiens) [TaxId: 9606]} Length = 78 Back     information, alignment and structure
>d1l9la_ a.64.1.1 (A:) Granulysin, NKG5 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 74 Back     information, alignment and structure
>d1l9la_ a.64.1.1 (A:) Granulysin, NKG5 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 74 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query491
d3psga_370 Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]} 100.0
g1htr.1372 Pepsin(ogen) {Human (Homo sapiens), progastricsin 100.0
d1dpja_329 Acid protease {Baker's yeast (Saccharomyces cerevi 100.0
d1smra_335 Chymosin (synonym: renin) {Mouse (Mus musculus) [T 100.0
d1miqa_373 Plasmepsin (a hemoglobin-degrading enzyme) {Plasmo 100.0
d1am5a_324 Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId: 100.0
d1hrna_337 Chymosin (synonym: renin) {Human (Homo sapiens) [T 100.0
d2apra_325 Acid protease {Bread mold (Rhizopus chinensis) [Ta 100.0
d1qdma2337 Plant acid proteinase, phytepsin {Barley (Hordeum 100.0
d1oewa_330 Endothiapepsin {Chestnut blight fungus (Endothia p 100.0
g1lya.1338 Cathepsin D {Human (Homo sapiens) [TaxId: 9606]} 100.0
g1b5f.1326 Plant acid proteinase, phytepsin {Cynara carduncul 100.0
d1j71a_334 Acid protease {Yeast (Candida tropicalis) [TaxId: 100.0
d1mppa_357 Pepsin {Mucor pusillus [TaxId: 4840]} 100.0
d2bjua1329 Plasmepsin (a hemoglobin-degrading enzyme) {Plasmo 100.0
d3cmsa_323 Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId 100.0
d1eaga_342 Acid protease {Yeast (Candida albicans) [TaxId: 54 100.0
d1wkra_340 Acid protease {Irpex lacteus (Polyporus tulipifera 100.0
d1izea_323 Acid protease {Fungus (Aspergillus oryzae) [TaxId: 100.0
d1bxoa_323 Acid protease {Fungus (Penicillium janthinellum), 100.0
d2qp8a1387 beta-secretase (memapsin) {Human (Homo sapiens) [T 100.0
d1t6ex_381 Xylanase inhibitor TAXI-I {Wheat (Triticum aestivu 99.97
d1qdma1104 (Pro)phytepsin {Barley (Hordeum vulgare) [TaxId: 4 99.44
d2gtga178 Saposin C {Human (Homo sapiens) [TaxId: 9606]} 97.36
d1nkla_78 NK-lysin, NKL {Pig (Sus scrofa) [TaxId: 9823]} 97.24
d1of9a_77 Ameobapore A {Entamoeba histolytica [TaxId: 5759]} 97.12
d1n69a_78 Saposin B {Human (Homo sapiens) [TaxId: 9606]} 97.07
d1l9la_74 Granulysin, NKG5 protein {Human (Homo sapiens) [Ta 96.75
d1nkla_78 NK-lysin, NKL {Pig (Sus scrofa) [TaxId: 9823]} 89.91
d1of9a_77 Ameobapore A {Entamoeba histolytica [TaxId: 5759]} 89.49
d1n69a_78 Saposin B {Human (Homo sapiens) [TaxId: 9606]} 87.08
d2gtga178 Saposin C {Human (Homo sapiens) [TaxId: 9606]} 84.36
>d3psga_ b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Pepsin(ogen)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=3e-56  Score=455.41  Aligned_cols=342  Identities=42%  Similarity=0.780  Sum_probs=295.1

Q ss_pred             eEEEeeeecCCChhhhhhhcchhhhhHHHHhhhhccCCCCCC--CCCCCcceeeeeecCCceEEEEEEEcCCCceEEEEE
Q 011190           30 LVRIGLKKMKLDPNNRLAARLESEHGEALRASVKKYGFPNNL--RDSEDTDIVALKNYMDAQYYGEIGIGTPPQKFTVIF  107 (491)
Q Consensus        30 ~~~ipl~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~l~n~~~~~Y~~~i~iGtP~Q~~~v~l  107 (491)
                      ++||||+|++..|+.+.+.+..++   .++  .|++.+..+.  ........+||.|+.|.+|+++|+||||||++.|++
T Consensus         1 ~v~ipl~k~~~~r~~~~~~~~~~~---~~~--~~~~~~~~~~~~~~~~~~~~~~l~n~~d~~Y~~~i~iGtP~Q~~~vi~   75 (370)
T d3psga_           1 LVKVPLVRKKSLRQNLIKDGKLKD---FLK--THKHNPASKYFPEAAALIGDEPLENYLDTEYFGTIGIGTPAQDFTVIF   75 (370)
T ss_dssp             CEEEEEEECCCHHHHHHHTTCHHH---HHH--HCCCCGGGGTCTTSCCSSCCCTTGGGTTCCEEEEEEETTTTEEEEEEE
T ss_pred             CEEEecccCccHHHHHHHcCcHHH---HHH--hcccchhhhhcccccCcccccccccccCCEEEEEEEEcCCCeEEEEEE
Confidence            489999999988888777665544   333  2222222221  122344567999999999999999999999999999


Q ss_pred             eCCCCceeeeCCCCCCCccccCCCCCCCCCCCcceecCceEEEEecCceEEEEEEEEEEEECcEeecccEEEEEEecCCc
Q 011190          108 DTGSSNLWVPSTNCYFSVACYFHSKYKSSQSSTYKKNGESASIQYGTGAIAGFFSYDSVKVGDLVVKDQEFIEATREPGV  187 (491)
Q Consensus       108 DTGSs~lWV~~~~C~~~~~C~~~~~f~p~~SsT~~~~~~~~~~~Yg~gs~~G~~~~D~v~ig~~~i~~~~fg~~~~~~~~  187 (491)
                      ||||+++||+|..|. ...|..++.|+|++|+||+..++.|.+.|++|+++|.++.|++.+++..++++.|+++....+.
T Consensus        76 DTGSs~~Wv~~~~C~-~~~~~~~~~yd~~~Sst~~~~~~~~~~~Yg~Gs~~G~~~~d~~~~~~~~~~~~~f~~~~~~~~~  154 (370)
T d3psga_          76 DTGSSNLWVPSVYCS-SLACSDHNQFNPDDSSTFEATSQELSITYGTGSMTGILGYDTVQVGGISDTNQIFGLSETEPGS  154 (370)
T ss_dssp             ETTCCCEEEEBTTCC-SGGGTTSCCBCGGGCTTCEEEEEEEEEESSSCEEEEEEEEEEEEETTEEEEEEEEEEECSCCCG
T ss_pred             eCCCCCeEEECccCC-CcccccccccCCCcccccccCCCcEEEEeCCceEEEEEEEEEEeeeceeeeeeEEEEEeeccCc
Confidence            999999999999997 5567788999999999999999999999999999999999999999999999999999887765


Q ss_pred             ccccccccccccCccccccCCCCcchHHHHHHcCCCCCCeEEEEeCCCCCCCCCeeEEECccCCCCCccceeEEeecccc
Q 011190          188 TFMVAKFDGILGLGFQEISVGNAVPVWYNMVKQGLIQDPVFSFWLNRNQQEDEGGEIVFGGVDPNHYKGKHTYVPVTQKG  267 (491)
Q Consensus       188 ~~~~~~~~GIlGLg~~~~s~~~~~~~~~~L~~~g~i~~~~FSl~l~~~~~~~~~G~L~fGgiD~~~~~G~l~~~pv~~~~  267 (491)
                      .+.....+||+|||++..+.....+++++|+.+|+|+.++||+|+.+..+  .+|.|+|||+|++++.|+++|+|+...+
T Consensus       155 ~~~~~~~~Gi~gl~~~~~~~~~~~~~~~~l~~~~~i~~~~fs~~l~~~~~--~~g~l~~Gg~d~~~~~~~l~~~p~~~~~  232 (370)
T d3psga_         155 FLYYAPFDGILGLAYPSISASGATPVFDNLWDQGLVSQDLFSVYLSSNDD--SGSVVLLGGIDSSYYTGSLNWVPVSVEG  232 (370)
T ss_dssp             GGGGCSCSEEEECSCGGGCGGGCCCHHHHHHHTTCSSSSEEEEEEC-------CEEEEETCCCGGGBSSCCEEEECSEET
T ss_pred             eecccccccccccccCcccccCCCchhhhhhhhcccccceeEEEeecCCC--CCceEecCCcCchhcccceeEEeecccc
Confidence            56667789999999998887788889999999999999999999987643  3799999999999999999999999999


Q ss_pred             eeEEEEeeEEECCeeceeecCCceEEEcCCCCcccccHHHHHHHHHHhCCCceeecccchhhhccchhhhhhhhhccCcc
Q 011190          268 YWQFNMGDVLIGGKPTGYCAGGCSAIADSGTSLLAGPTTVITMINHAIGASGVVSQQCKAVVEQYGQTILDLLLFEAHPK  347 (491)
Q Consensus       268 ~w~v~l~~i~vgg~~~~~~~~~~~aiiDTGTt~i~lP~~~~~~l~~~l~a~~~~~~~C~~~~~~~g~~~i~~~~~~~~~~  347 (491)
                      +|.+.++++.+++..+. ...+..++|||||+++++|.+++++|++++++.                             
T Consensus       233 ~w~v~~~~i~v~g~~~~-~~~~~~aiiDSGTs~~~lp~~~~~~i~~~l~~~-----------------------------  282 (370)
T d3psga_         233 YWQITLDSITMDGETIA-CSGGCQAIVDTGTSLLTGPTSAIANIQSDIGAS-----------------------------  282 (370)
T ss_dssp             TEEEEECEEESSSSEEE-CTTCEEEEECTTCCSEEEEHHHHHHHHHHTTCE-----------------------------
T ss_pred             eEEEEEeeEEeCCeEEe-cCCCccEEEecCCceEeCCHHHHHHHHHHhCCe-----------------------------
Confidence            99999999999998775 346789999999999999999999999999876                             


Q ss_pred             cccccCcccccCCCccccccccccccccCccccCccCcccchhhHHHHHHHHHHhhhchhHHHHHHHHHhhhccCCCCCC
Q 011190          348 KICSQMGLCTFDGKRGVSMGIESVVDESNDKSSGVLNNAMCSACEMAVVWMQNQLQQNQTQENILQYVNELCDRMPSPMG  427 (491)
Q Consensus       348 ~~~~~~g~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  427 (491)
                                                                                                 ....|
T Consensus       283 ---------------------------------------------------------------------------~~~~~  287 (370)
T d3psga_         283 ---------------------------------------------------------------------------ENSDG  287 (370)
T ss_dssp             ---------------------------------------------------------------------------ECTTC
T ss_pred             ---------------------------------------------------------------------------eecCC
Confidence                                                                                       12367


Q ss_pred             ceeecCcCCCCCCcEEEEECCEEEeeCcCccEEEeCCCCcceeeeceeeccCCCCCCCeeE
Q 011190          428 ESAVDCGKLSSMPIVSFTIGGKVFDLSPEEYILKVGEGPEAQCISGFTAMDVPPPRGPLWY  488 (491)
Q Consensus       428 ~~~~~C~~~~~~p~i~f~~~g~~~~l~~~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~~  488 (491)
                      .|.++|...+.+|+|+|+|+|++|.|+|++|+++.+    ..|+++|..++.++..++.||
T Consensus       288 ~~~~~C~~~~~~P~l~f~f~g~~~~l~~~~yi~~~~----~~c~~~~~~~~~~~~~~~~~I  344 (370)
T d3psga_         288 EMVISCSSIDSLPDIVFTIDGVQYPLSPSAYILQDD----DSCTSGFEGMDVPTSSGELWI  344 (370)
T ss_dssp             CEECCGGGGGGCCCEEEEETTEEEEECHHHHEEECS----SCEEESEEEECCCTTSCCEEE
T ss_pred             cEEEeccccCCCceEEEEECCEEEEEChHHeEEEcC----CeEEEEEEEcccCCCCCCcEE
Confidence            789999998899999999999999999999999854    459999999999988889997
>d1dpja_ b.50.1.2 (A:) Acid protease {Baker's yeast (Saccharomyces cerevisiae), proteinase A [TaxId: 4932]} Back     information, alignment and structure
>d1smra_ b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1miqa_ b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium vivax [TaxId: 5855]} Back     information, alignment and structure
>d1am5a_ b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId: 8049]} Back     information, alignment and structure
>d1hrna_ b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2apra_ b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus chinensis) [TaxId: 4843]} Back     information, alignment and structure
>d1qdma2 b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase, phytepsin {Barley (Hordeum vulgare) [TaxId: 4513]} Back     information, alignment and structure
>d1j71a_ b.50.1.2 (A:) Acid protease {Yeast (Candida tropicalis) [TaxId: 5482]} Back     information, alignment and structure
>d1mppa_ b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840]} Back     information, alignment and structure
>d2bjua1 b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium falciparum, plasmepsin II [TaxId: 5833]} Back     information, alignment and structure
>d3cmsa_ b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1eaga_ b.50.1.2 (A:) Acid protease {Yeast (Candida albicans) [TaxId: 5476]} Back     information, alignment and structure
>d1wkra_ b.50.1.2 (A:) Acid protease {Irpex lacteus (Polyporus tulipiferae), Polyporopepsin [TaxId: 5319]} Back     information, alignment and structure
>d1izea_ b.50.1.2 (A:) Acid protease {Fungus (Aspergillus oryzae) [TaxId: 5062]} Back     information, alignment and structure
>d1bxoa_ b.50.1.2 (A:) Acid protease {Fungus (Penicillium janthinellum), penicillopepsin [TaxId: 5079]} Back     information, alignment and structure
>d2qp8a1 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1t6ex_ b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Triticum aestivum) [TaxId: 4565]} Back     information, alignment and structure
>d1qdma1 a.64.1.2 (A:1S-104S) (Pro)phytepsin {Barley (Hordeum vulgare) [TaxId: 4513]} Back     information, alignment and structure
>d2gtga1 a.64.1.1 (A:2-79) Saposin C {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nkla_ a.64.1.1 (A:) NK-lysin, NKL {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1of9a_ a.64.1.4 (A:) Ameobapore A {Entamoeba histolytica [TaxId: 5759]} Back     information, alignment and structure
>d1n69a_ a.64.1.3 (A:) Saposin B {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1l9la_ a.64.1.1 (A:) Granulysin, NKG5 protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nkla_ a.64.1.1 (A:) NK-lysin, NKL {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1of9a_ a.64.1.4 (A:) Ameobapore A {Entamoeba histolytica [TaxId: 5759]} Back     information, alignment and structure
>d1n69a_ a.64.1.3 (A:) Saposin B {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2gtga1 a.64.1.1 (A:2-79) Saposin C {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure