Citrus Sinensis ID: 011198

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-
MSATKIGYLVPLDNNLREDNSLPKLPLSQGPNVIGRTNIPVSDKRLSRKHITLTASADGSASLVVDGTNPVVVKSGDQRKKLSSNEHVSIADGDIIELIPGHHFFKYVTLSRSQKRVSNDGATNGELSSKKMRQQDEQDNENGKNSEEALCNFHVSRDKLPSTFRLLRVQGLPAWANTSCVSIRDVIQGDIIVAILSNYMVDIDWLLPACPVLAKIPHVLVIHGESDGTLEHMKRNKPANWILHKPPLPISFGTHHSKAMLLIYPRGVRIIVHTANLIHVDWNNKSQGLWMQDFPLKDQNNLSEECGFENDLIDYLSTLKWPEFSANLPAHGNFKINPSFFKKFNFSSAAVRLIASVPGYHTGSSLKKWGHMKLRTVLQECTFEKGFKKSPLVYQFSSLGSLDEKWMAELSSSMSSGFSEDKTPLGIGEPLIVWPTVEDVRCSLEGYAAGNAIPSPQKNVDKDFLKKYWAKWKASHTGRRYNIDLYLPPPY
ccccccEEEEEcccccccccccccccccccccccccccccccccccccccEEEEEccccccccccccccccEEcccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccccccccccccHHcHHHHHHHHHHHHHccHHHHHHHccccccccEEEEEEccccHHHHHHHHcccccEEEccccccccccccEEEEEEEEEcccEEEEEEcccccHHHHcccccEEEEEcccccccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccEEEEEccccccccccccHHHHHHHHHHHHcccccccccccEEEEEcccccccHHHHHHHHHHHccccccccccccccccEEEcccHHHHHHccccccccccEEccccccHHHHHHHHHHHcccccccccccccccccccc
ccccEEEEEEEccccccccccccccEccccccEEcccccEccccEccccEEEEEEcccccEEEEEEccccEEEEccccEEEEccccEEEEEccccHHccccccEEEEEEccccccccccccccccccHHHHccccccccccccccccHHHcccccccccccccEEEEEEccccccccccccEHHHHHcccHHHHEHHHHHEcHHHHHHHccHHccccEEEEEEccccHHHHHHcccccccEEEEEccccccccccccEEEEEEEccccEEEEEEccccHHHHHHcccEEEEccccccccccccccccHHHHHHHHHHHccccHHHHHHccccccccHHHHHHHccccccEEEEEEcccccccccccccccHHHHHHHHHHcccccccccccEEEEEccHccccHHHHHHHHHHHHHccccccccccccccEEEEccHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHcccccccccEEEcccccc
msatkigylvpldnnlrednslpklplsqgpnvigrtnipvsdkrlsrkhitltasadgsaslvvdgtnpvvvksgdqrkklssnehvsiadgdiielipghhffKYVTLSrsqkrvsndgatngelssKKMRQQDeqdnengknsEEALCNFhvsrdklpSTFRLLRvqglpawantscvsiRDVIQGDIIVAILSNYMVDidwllpacpvlakiphvlvihgesdgtlehmkrnkpanwilhkpplpisfgthhsKAMLLIYPRGVRIIVHTANLIHvdwnnksqglwmqdfplkdqnnlseecgfeNDLIDYLstlkwpefsanlpahgnfkinpsffkkfnfSSAAVRLIAsvpgyhtgsslkkwgHMKLRTVLQEctfekgfkksplvyqfsslgslDEKWMAELSSsmssgfsedktplgigeplivwptvedvrcslegyaagnaipspqknvdKDFLKKYWAKWKashtgrrynidlylpppy
MSATKIGYLVPLDNNLREDNSlpklplsqgpnvigrtnipvsdkrlsRKHITLtasadgsaslvvdgTNPVVVksgdqrkklssnehvsiadgdiieliPGHHFFKYVTLsrsqkrvsndgatngelsskkmrqQDEQDNENGKNSEEALCNFHVSRDKLPSTFRLLRVQGLpawantscvsiRDVIQGDIIVAILSNYMVDIDWLLPACPVLAKIPHVLVIHGESDGTLEHMKRNKPANWILHKPPLPISFGTHHSKAMLLIYPRGVRIIVHTANLIHVDWNNKSQGLWMQDFPLKDQNNLSEECGFENDLIDYLSTLKWPEFSANLPAHGNFKINPSFFKKFNFSSAAVRLIASVPGYHTGSSLKKWGHMKLRTVLQECTFEKGFKKSPLVYQFSSLGSLDEKWMAELSSSMSSGFSEDKTPLGIGEPLIVWPTVEDVRCSLEGyaagnaipspqknvdKDFLKKYWAKwkashtgrrynidlylpppy
MSATKIGYLVPLDNNLREDNSLPKLPLSQGPNVIGRTNIPVSDKRLSRKHITLTASADGSASLVVDGTNPVVVKSGDQRKKLSSNEHVSIADGDIIELIPGHHFFKYVTLSRSQKRVSNDGATNGELSSKKMRQQDEQDNENGKNSEEALCNFHVSRDKLPSTFRLLRVQGLPAWANTSCVSIRDVIQGDIIVAILSNYMVDIDWLLPACPVLAKIPHVLVIHGESDGTLEHMKRNKPANWILHKPPLPISFGTHHSKAMLLIYPRGVRIIVHTANLIHVDWNNKSQGLWMQDFPLKDQNNLSEECGFENDLIDYLSTLKWPEFSANLPAHGnfkinpsffkkfnfssAAVRLIASVPGYHTGSSLKKWGHMKLRTVLQECTFEKGFKKSPLVYQFSSLGSLDEKWMAELsssmssgfsEDKTPLGIGEPLIVWPTVEDVRCSLEGYAAGNAIPSPQKNVDKDFLKKYWAKWKASHTGRRYNIDLYLPPPY
*******YLV*****************************************************************************VSIADGDIIELIPGHHFFKYVTL***************************************LCNFHVSRDKLPSTFRLLRVQGLPAWANTSCVSIRDVIQGDIIVAILSNYMVDIDWLLPACPVLAKIPHVLVIHGESDGTLEHMKRNKPANWILHKPPLPISFGTHHSKAMLLIYPRGVRIIVHTANLIHVDWNNKSQGLWMQDFPLKDQNNLSEECGFENDLIDYLSTLKWPEFSANLPAHGNFKINPSFFKKFNFSSAAVRLIASVPGYHTGSSLKKWGHMKLRTVLQECTFEKGFKKSPLVYQFSSLGSLDEKW******************LGIGEPLIVWPTVEDVRCSLEGYAAGNAIPSPQKNVDKDFLKKYWAKWKASHTGRRYNIDLYL****
****KIG*********************QGPNVIGRTN*************************************************************************************************************************LPSTFRLLRVQGLPAWANTSCVSIRDVIQGDIIVAILSNYMVDIDWLLPACPVLAKIPHVLVIHGESDG***HMKRNKPANWILHKPPLPISFGTHHSKAMLLIYPRGVRIIVHTANLIHVDWNNKSQGLWMQ*******************LIDYLSTLKWPEFSANLPAHGNFKINPSFFKKFNFSSAAVRLIASVPGYHTGSSLKKWGHMKLRTVLQECT***GFKKSPLVYQFSSLGSLDEKWMAELSS******************LIVWPTVEDVRCSLEGYAAGNAIPSPQKNVDKDFLKKYWAKWKASHTGRRYNIDLYLPPP*
MSATKIGYLVPLDNNLREDNSLPKLPLSQGPNVIGRTNIPVSDKRLSRKHITLTASADGSASLVVDGTNPVVVKSGDQRKKLSSNEHVSIADGDIIELIPGHHFFKYVTLSR*********************************SEEALCNFHVSRDKLPSTFRLLRVQGLPAWANTSCVSIRDVIQGDIIVAILSNYMVDIDWLLPACPVLAKIPHVLVIHGESDGTLEHMKRNKPANWILHKPPLPISFGTHHSKAMLLIYPRGVRIIVHTANLIHVDWNNKSQGLWMQDFPLKDQNNLSEECGFENDLIDYLSTLKWPEFSANLPAHGNFKINPSFFKKFNFSSAAVRLIASVPGYHTGSSLKKWGHMKLRTVLQECTFEKGFKKSPLVYQFSSLGSLDEKWMAEL**********DKTPLGIGEPLIVWPTVEDVRCSLEGYAAGNAIPSPQKNVDKDFLKKYWAKWKASHTGRRYNIDLYLPPPY
**ATKIGYLVPLDNNL*EDNSLPKLPLSQGPNVIGRTNIPVSDKRLSRKHITLTASADGSASLVVDGTNPVVVKSGDQRKKLSSNEHVSIADGDIIELIPGHHFFKYVTLS*******************************************VSRDKLPSTFRLLRVQGLPAWANTSCVSIRDVIQGDIIVAILSNYMVDIDWLLPACPVLAKIPHVLVIHGESDGTLEHMKRNKPANWILHKPPLPISFGTHHSKAMLLIYPRGVRIIVHTANLIHVDWNNKSQGLWMQDFPLK******EECGFENDLIDYLSTLKWPEFSANLPAHGNFKINPSFFKKFNFSSAAVRLIASVPGYHTGSSLKKWGHMKLRTVLQECTFEKGFKKSPLVYQFSSLGSLDEKWMAELSSSMSSGFSEDKTPLGIGEPLIVWPTVEDVRCSLEGYAAGNAIPSPQKNVDKDFLKKYWAKWKASHTGRRYNIDLYLPPP*
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MSATKIGYLVPLDNNLREDNSLPKLPLSQGPNVIGRTNIPVSDKRLSRKHITLTASADGSASLVVDGTNPVVVKSGDQRKKLSSNEHVSIADGDIIELIPGHHFFKYVTLSRSQKRVSNDGATNGELSSKKMRQQDEQDNENGKNSEEALCNFHVSRDKLPSTFRLLRVQGLPAWANTSCVSIRDVIQGDIIVAILSNYMVDIDWLLPACPVLAKIPHVLVIHGESDGTLEHMKRNKPANWILHKPPLPISFGTHHSKAMLLIYPRGVRIIVHTANLIHVDWNNKSQGLWMQDFPLKDQNNLSEECGFENDLIDYLSTLKWPEFSANLPAHGNFKINPSFFKKFNFSSAAVRLIASVPGYHTGSSLKKWGHMKLRTVLQECTFEKGFKKSPLVYQFSSLGSLDEKWMAELSSSMSSGFSEDKTPLGIGEPLIVWPTVEDVRCSLEGYAAGNAIPSPQKNVDKDFLKKYWAKWKASHTGRRYNIDLYLPPPY
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query491 2.2.26 [Sep-21-2011]
Q9NUW8 608 Tyrosyl-DNA phosphodieste yes no 0.790 0.638 0.313 2e-45
Q8BJ37 609 Tyrosyl-DNA phosphodieste yes no 0.625 0.504 0.347 2e-43
Q4G056 609 Tyrosyl-DNA phosphodieste yes no 0.610 0.492 0.340 9e-43
Q9VQM4580 Probable tyrosyl-DNA phos yes no 0.576 0.487 0.303 2e-23
Q9TXV7451 Probable tyrosyl-DNA phos yes no 0.572 0.623 0.301 6e-22
Q9USG9 536 Probable tyrosyl-DNA phos yes no 0.641 0.587 0.235 4e-11
>sp|Q9NUW8|TYDP1_HUMAN Tyrosyl-DNA phosphodiesterase 1 OS=Homo sapiens GN=TDP1 PE=1 SV=2 Back     alignment and function desciption
 Score =  184 bits (466), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 134/427 (31%), Positives = 217/427 (50%), Gaps = 39/427 (9%)

Query: 78  QRKKLSSNEHV----SIADGDIIELIPGHHFFKYVTLSRSQKRVSNDGAT-----NGELS 128
           +R+K  S E +    S +D ++   +P     K V          NDG       +G  +
Sbjct: 75  KRQKSGSQEDLGWCLSSSDDELQPEMPQKQAEKVVIKKEKDISAPNDGTAQRTENHGAPA 134

Query: 129 SKKMRQQDEQDNENGKNSEEALCNFHVSRDKLPSTFRLLRVQGLPAWANTSCVSIRDVIQ 188
             ++++++++   +G+  +     + +     P  F L RV G+    N+  + I+D++ 
Sbjct: 135 CHRLKEEEDEYETSGEGQD----IWDMLDKGNPFQFYLTRVSGVKPKYNSGALHIKDILS 190

Query: 189 ---GDIIVAILSNYMVDIDWLLPACPVLAKIPHVLVIHGESDGTLEHM-KRNKP-ANWIL 243
              G ++ +   NY  D+DWL+   P   +   +L++HG+      H+  + KP  N  L
Sbjct: 191 PLFGTLVSSAQFNYCFDVDWLVKQYPPEFRKKPILLVHGDKREAKAHLHAQAKPYENISL 250

Query: 244 HKPPLPISFGTHHSKAMLLIYPRGVRIIVHTANLIHVDWNNKSQGLWMQD-FP-LKDQNN 301
            +  L I+FGTHH+K MLL+Y  G+R+++HT+NLIH DW+ K+QG+W+   +P + D  +
Sbjct: 251 CQAKLDIAFGTHHTKMMLLLYEEGLRVVIHTSNLIHADWHQKTQGIWLSPLYPRIADGTH 310

Query: 302 LSEE--CGFENDLIDYLSTLKWPEFSANLPAHGNFKINPSFFKKFNFSSAAVRLIASVPG 359
            S E    F+ DLI YL     P     +              K + S   V LI S PG
Sbjct: 311 KSGESPTHFKADLISYLMAYNAPSLKEWI----------DVIHKHDLSETNVYLIGSTPG 360

Query: 360 YHTGSSLKKWGHMKLRTVLQECTFEKGFKKS-PLVYQFSSLGSL---DEKWM-AELSSSM 414
              GS    WGH +L+ +L++        +S P+V QFSS+GSL   + KW+ +E   SM
Sbjct: 361 RFQGSQKDNWGHFRLKKLLKDHASSMPNAESWPVVGQFSSVGSLGADESKWLCSEFKESM 420

Query: 415 SSGFSEDKTPLGIGEPL-IVWPTVEDVRCSLEGYAAGNAIP-SPQKNVDKDFLKKYWAKW 472
            +   E KTP     PL +++P+VE+VR SLEGY AG ++P S Q    +++L  Y+ KW
Sbjct: 421 LTLGKESKTPGKSSVPLYLIYPSVENVRTSLEGYPAGGSLPYSIQTAEKQNWLHSYFHKW 480

Query: 473 KASHTGR 479
            A  +GR
Sbjct: 481 SAETSGR 487
DNA repair enzyme that can remove a variety of covalent adducts from DNA through hydrolysis of a 3'-phosphodiester bond, giving rise to DNA with a free 3' phosphate. Catalyzes the hydrolysis of dead-end complexes between DNA and the topoisomerase I active site tyrosine residue. Hydrolyzes 3'-phosphoglycolates on protruding 3' ends on DNA double-strand breaks due to DNA damage by radiation and free radicals. Acts on blunt-ended double-strand DNA breaks and on single-stranded DNA. Has low 3'exonuclease activity and can remove a single nucleoside from the 3'end of DNA and RNA molecules with 3'hydroxyl groups. Has no exonuclease activity towards DNA or RNA with a 3'phosphate.
Homo sapiens (taxid: 9606)
EC: 3EC: .EC: 1EC: .EC: 4EC: .EC: -
>sp|Q8BJ37|TYDP1_MOUSE Tyrosyl-DNA phosphodiesterase 1 OS=Mus musculus GN=Tdp1 PE=2 SV=2 Back     alignment and function description
>sp|Q4G056|TYDP1_RAT Tyrosyl-DNA phosphodiesterase 1 OS=Rattus norvegicus GN=Tdp1 PE=2 SV=1 Back     alignment and function description
>sp|Q9VQM4|TYDP1_DROME Probable tyrosyl-DNA phosphodiesterase OS=Drosophila melanogaster GN=gkt PE=2 SV=1 Back     alignment and function description
>sp|Q9TXV7|TYDP1_CAEEL Probable tyrosyl-DNA phosphodiesterase OS=Caenorhabditis elegans GN=F52C12.1 PE=3 SV=1 Back     alignment and function description
>sp|Q9USG9|TYDP1_SCHPO Probable tyrosyl-DNA phosphodiesterase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCP31B10.05 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query491
255554997 665 tyrosyl-DNA phosphodiesterase, putative 0.912 0.673 0.722 0.0
359483320 621 PREDICTED: tyrosyl-DNA phosphodiesterase 0.945 0.747 0.728 0.0
302144065 678 unnamed protein product [Vitis vinifera] 0.975 0.706 0.685 0.0
356507524 610 PREDICTED: tyrosyl-DNA phosphodiesterase 0.926 0.745 0.72 0.0
449479663 959 PREDICTED: tyrosyl-DNA phosphodiesterase 0.967 0.495 0.697 0.0
356507526 599 PREDICTED: tyrosyl-DNA phosphodiesterase 0.904 0.741 0.717 0.0
449434370 613 PREDICTED: tyrosyl-DNA phosphodiesterase 0.947 0.758 0.699 0.0
297811655 612 hypothetical protein ARALYDRAFT_488358 [ 0.945 0.758 0.663 0.0
7671486 627 putative protein [Arabidopsis thaliana] 0.930 0.728 0.657 0.0
22326821 605 tyrosyl-DNA phosphodiesterase 1 [Arabido 0.930 0.755 0.657 0.0
>gi|255554997|ref|XP_002518536.1| tyrosyl-DNA phosphodiesterase, putative [Ricinus communis] gi|223542381|gb|EEF43923.1| tyrosyl-DNA phosphodiesterase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  726 bits (1874), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/475 (72%), Positives = 395/475 (83%), Gaps = 27/475 (5%)

Query: 5   KIGYLVPLDNNLREDNSLPKLPLSQGPNVIGRTNIPVSDKRLSRKHITLTASADGSASLV 64
           KIG+LVPL  NL ED S+PK+ LS+GPN IGR+++ VSDKRLSR H++LT S DGSA L 
Sbjct: 62  KIGFLVPLKLNLEEDTSIPKISLSEGPNAIGRSHVSVSDKRLSRNHLSLTTSVDGSAFLT 121

Query: 65  VDGTNPVVVKSGDQRKKLSSNEHVSIADGDIIELIPGHHFFKYVTLSRSQKRVSNDGATN 124
            +GTNPVV+KSGDQRKKLS  E  SI  GD+IELIPGHHFFKY            +G  N
Sbjct: 122 PEGTNPVVIKSGDQRKKLSPGEKASINSGDVIELIPGHHFFKY----------EGEGECN 171

Query: 125 GELSSKKMRQQDEQDNENGKNSEEALCNFHVSRDKLPSTFRLLRVQGLPAWANTSCVSIR 184
           G                  KNSEEA+  F+V+ DKLP TFRL++V+GLPAWANTSCVSI 
Sbjct: 172 G-----------------AKNSEEAIGKFNVNDDKLPLTFRLMKVKGLPAWANTSCVSIT 214

Query: 185 DVIQGDIIVAILSNYMVDIDWLLPACPVLAKIPHVLVIHGESDGTLEHMKRNKPANWILH 244
           DVIQGDI+ A+LSNYMVDIDWL+ ACP LAK+P+VLV+HGE DGTLEHMKR KPANWILH
Sbjct: 215 DVIQGDIVFAVLSNYMVDIDWLMSACPALAKVPNVLVLHGEGDGTLEHMKRTKPANWILH 274

Query: 245 KPPLPISFGTHHSKAMLLIYPRGVRIIVHTANLIHVDWNNKSQGLWMQDFPLKDQNNLSE 304
           KPPLPISFGTHHSKAMLL+YPRG+RIIVHTANLI+VDWNNK+QGLWMQDFP KD+ + ++
Sbjct: 275 KPPLPISFGTHHSKAMLLVYPRGMRIIVHTANLIYVDWNNKTQGLWMQDFPWKDEKSQTK 334

Query: 305 ECGFENDLIDYLSTLKWPEFSANLPAHGNFKINPSFFKKFNFSSAAVRLIASVPGYHTGS 364
            CGFENDL+DYL+TLKWPEF+  LPA G+F INPSFFKKF++S+AAVRLIASVPGYHTG 
Sbjct: 335 GCGFENDLVDYLNTLKWPEFTVKLPALGSFTINPSFFKKFDYSTAAVRLIASVPGYHTGP 394

Query: 365 SLKKWGHMKLRTVLQECTFEKGFKKSPLVYQFSSLGSLDEKWMAELSSSMSSGFSEDKTP 424
           +LKKWGHMKLR+VLQECTF K FK SPL YQFSSLGSLD KWM EL++S+SSG SED+TP
Sbjct: 395 NLKKWGHMKLRSVLQECTFRKEFKNSPLAYQFSSLGSLDAKWMTELATSLSSGLSEDRTP 454

Query: 425 LGIGEPLIVWPTVEDVRCSLEGYAAGNAIPSPQKNVDKDFLKKYWAKWKASHTGR 479
           LG+GEP I+WPTVEDVRCSLEGYAAGNAIPSP KNV+KD LKKYW+KWKA+H+GR
Sbjct: 455 LGLGEPRIIWPTVEDVRCSLEGYAAGNAIPSPLKNVEKDILKKYWSKWKATHSGR 509

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359483320|ref|XP_002265078.2| PREDICTED: tyrosyl-DNA phosphodiesterase 1-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|302144065|emb|CBI23170.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356507524|ref|XP_003522514.1| PREDICTED: tyrosyl-DNA phosphodiesterase 1-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|449479663|ref|XP_004155668.1| PREDICTED: tyrosyl-DNA phosphodiesterase 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356507526|ref|XP_003522515.1| PREDICTED: tyrosyl-DNA phosphodiesterase 1-like isoform 2 [Glycine max] Back     alignment and taxonomy information
>gi|449434370|ref|XP_004134969.1| PREDICTED: tyrosyl-DNA phosphodiesterase 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297811655|ref|XP_002873711.1| hypothetical protein ARALYDRAFT_488358 [Arabidopsis lyrata subsp. lyrata] gi|297319548|gb|EFH49970.1| hypothetical protein ARALYDRAFT_488358 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|7671486|emb|CAB89327.1| putative protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|22326821|ref|NP_197021.2| tyrosyl-DNA phosphodiesterase 1 [Arabidopsis thaliana] gi|23297734|gb|AAN13014.1| unknown protein [Arabidopsis thaliana] gi|226511716|gb|ACO60340.1| tyrosyl-DNA phosphodiesterase I [Arabidopsis thaliana] gi|332004741|gb|AED92124.1| tyrosyl-DNA phosphodiesterase 1 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query491
TAIR|locus:2150931 605 TDP1 "tyrosyl-DNA phosphodiest 0.676 0.548 0.696 6.4e-166
UNIPROTKB|E7EPD8589 TDP1 "Tyrosyl-DNA phosphodiest 0.808 0.674 0.308 2.7e-45
UNIPROTKB|G3V2F4578 TDP1 "Tyrosyl-DNA phosphodiest 0.808 0.686 0.308 2.7e-45
UNIPROTKB|Q9NUW8 608 TDP1 "Tyrosyl-DNA phosphodiest 0.808 0.652 0.308 2.7e-45
UNIPROTKB|E2REL5 609 TDP1 "Uncharacterized protein" 0.627 0.505 0.351 2.4e-44
UNIPROTKB|F1MST1 612 TDP1 "Uncharacterized protein" 0.647 0.519 0.347 1.7e-43
MGI|MGI:1920036 609 Tdp1 "tyrosyl-DNA phosphodiest 0.647 0.522 0.343 1.2e-42
UNIPROTKB|F1SDA7 607 LOC100625067 "Uncharacterized 0.641 0.518 0.346 4e-42
RGD|1309618 609 Tdp1 "tyrosyl-DNA phosphodiest 0.704 0.568 0.322 4e-42
UNIPROTKB|F1NSQ5 602 TDP1 "Uncharacterized protein" 0.706 0.576 0.311 9.6e-41
TAIR|locus:2150931 TDP1 "tyrosyl-DNA phosphodiesterase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1279 (455.3 bits), Expect = 6.4e-166, Sum P(2) = 6.4e-166
 Identities = 232/333 (69%), Positives = 264/333 (79%)

Query:   148 EALCNFHVSRDKLPSTFRLLRVQGLPAWANTSCVSIRDVIQGDIIVAILSNYMVDIDWLL 207
             EA+  F    +KLPSTFRLL V  LP WANTSCVSI DVI+GD++ AILSNYMVDIDWL+
Sbjct:   128 EAIRRFCPPNEKLPSTFRLLSVDALPDWANTSCVSINDVIEGDVVAAILSNYMVDIDWLM 187

Query:   208 PACPVLAKIPHVLVIHGESDGTLEHMKRNKPANWILHKPPLPISFGTHHSKAMLLIYPRG 267
              ACP LA IP V+VIHGE DG  E+++R KPANWILHKP LPISFGTHHSKA+ L+YPRG
Sbjct:   188 SACPKLANIPQVMVIHGEGDGRQEYIQRKKPANWILHKPRLPISFGTHHSKAIFLVYPRG 247

Query:   268 VRIIVHTANLIHVDWNNKSQGLWMQDFPLKDQN-NLSEECGFENDLIDYLSTLKWPEFSA 326
             VR++VHTANLIHVDWNNKSQGLWMQDFP KD + +  + CGFE DLIDYL+ LKWPEF+A
Sbjct:   248 VRVVVHTANLIHVDWNNKSQGLWMQDFPWKDDDKDPPKGCGFEGDLIDYLNVLKWPEFTA 307

Query:   327 NLPAHGXXXXXXXXXXXXXXXXAAVRLIASVPGYHTGSSLKKWGHMKLRTVLQECTFEKG 386
             NLP  G                A VRLIASVPGYHTG +L KWGHMKLRT+LQEC F++ 
Sbjct:   308 NLPGRGNVKINAAFFKKFDYSDATVRLIASVPGYHTGFNLNKWGHMKLRTILQECIFDRE 367

Query:   387 FKKSPLVYQFSSLGSLDEKWMAELXXXXXXXXXEDKTPLGIGEPLIVWPTVEDVRCSLEG 446
             F++SPL+YQFSSLGSLDEKW+AE          EDKTPLG G+ LI+WPTVEDVRCSLEG
Sbjct:   368 FRRSPLIYQFSSLGSLDEKWLAEFGNSLSSGITEDKTPLGPGDSLIIWPTVEDVRCSLEG 427

Query:   447 YAAGNAIPSPQKNVDKDFLKKYWAKWKASHTGR 479
             YAAGNAIPSP KNV+K FLKKYWA+WKA H+ R
Sbjct:   428 YAAGNAIPSPLKNVEKPFLKKYWARWKADHSAR 460
GO:0005634 "nucleus" evidence=IEA
GO:0006281 "DNA repair" evidence=IEA
GO:0008081 "phosphoric diester hydrolase activity" evidence=IEA
GO:0017005 "3'-tyrosyl-DNA phosphodiesterase activity" evidence=IDA
GO:0009616 "virus induced gene silencing" evidence=RCA
GO:0010050 "vegetative phase change" evidence=RCA
UNIPROTKB|E7EPD8 TDP1 "Tyrosyl-DNA phosphodiesterase 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|G3V2F4 TDP1 "Tyrosyl-DNA phosphodiesterase 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q9NUW8 TDP1 "Tyrosyl-DNA phosphodiesterase 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E2REL5 TDP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1MST1 TDP1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
MGI|MGI:1920036 Tdp1 "tyrosyl-DNA phosphodiesterase 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1SDA7 LOC100625067 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
RGD|1309618 Tdp1 "tyrosyl-DNA phosphodiesterase 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1NSQ5 TDP1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00006918001
SubName- Full=Chromosome chr10 scaffold_179, whole genome shotgun sequence; (584 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query491
pfam06087433 pfam06087, Tyr-DNA_phospho, Tyrosyl-DNA phosphodie 1e-63
cd09122145 cd09122, PLDc_Tdp1_1, Catalytic domain, repeat 1, 3e-53
cd09195191 cd09195, PLDc_mTdp1_2, Catalytic domain, repeat 2, 2e-33
cd09193169 cd09193, PLDc_mTdp1_1, Catalytic domain, repeat 1, 3e-31
cd09194166 cd09194, PLDc_yTdp1_1, Catalytic domain, repeat 1, 2e-26
cd09123182 cd09123, PLDc_Tdp1_2, Catalytic domain, repeat 2, 4e-26
cd00060102 cd00060, FHA, Forkhead associated domain (FHA); fo 3e-07
pfam0049867 pfam00498, FHA, FHA domain 0.003
>gnl|CDD|218888 pfam06087, Tyr-DNA_phospho, Tyrosyl-DNA phosphodiesterase Back     alignment and domain information 
 Score =  212 bits (542), Expect = 1e-63
 Identities = 96/328 (29%), Positives = 161/328 (49%), Gaps = 34/328 (10%)

Query: 177 NTSCVSIRDVIQ-GDIIVAILSNYMVDIDWLLPACPVLAKIPHVLVIHGESDG--TLEHM 233
           N   +++ D++   D+  +   N+M D+D+LL       +   + ++ G  +     E +
Sbjct: 19  NPDTITLEDILGDPDLEESWQFNFMFDLDFLLDQFDPSGRENKITIVTGTDNLLEKREII 78

Query: 234 KRNKPANWILHKPPLPISFGTHHSKAMLLIYPRG-VRIIVHTANLIHVDWNNKSQGLWMQ 292
           +     N  + K  +P  FGTHH+K M+L Y  G  R+++ TANL   DW N +QGLW+ 
Sbjct: 79  EDCGYPNVTVIKAKMPGPFGTHHTKMMILFYEDGSCRVVIPTANLTPGDWGNMTQGLWIS 138

Query: 293 DFPLKDQNNLSEE-CGFENDLIDYLSTLKWPEFSANLPAHGNFKINPSFFKKFNFSSAAV 351
                 ++ L E    F+ DL++YLS          L             +K++FSS  V
Sbjct: 139 PLLKIGKSELEESSTRFKRDLLEYLSEYGAKTLLEPLID---------RLRKYDFSSVNV 189

Query: 352 RLIASVPGYHTGSSLKKWGHMKLRTVLQE---CTFEKGFKKSPLVYQFSSLGSLD--EKW 406
            L+ASVPG HTG+   KWG  +L +VL+     T ++  ++  +V Q SS+GSL    K 
Sbjct: 190 ELVASVPGKHTGNK-DKWGLPRLGSVLRANPLLTKDEKDEQVHVVCQSSSIGSLGVTPKD 248

Query: 407 ------MAELSSSMSSGFSEDKTPLGIGE----PLIVWPTVEDVRCSLEGYAAGNAIP-- 454
                 +  L  +  S   ++ +     E    P I++PTV++VR SL+GY +G ++   
Sbjct: 249 WLKSNFLGSLYPASFSSEGQESSINQQKERKPKPRIIYPTVDEVRTSLDGYDSGGSLHFK 308

Query: 455 --SPQKNVDKDFLKKYWAKWKASHTGRR 480
             S      +++L+ Y  KWK+S+  + 
Sbjct: 309 KQSYATKFPQEWLRPYLHKWKSSNADKG 336

Covalent intermediates between topoisomerase I and DNA can become dead-end complexes that lead to cell death. Tyrosyl-DNA phosphodiesterase can hydrolyse the bond between topoisomerase I and DNA. Length = 433
>gnl|CDD|197221 cd09122, PLDc_Tdp1_1, Catalytic domain, repeat 1, of Tyrosyl-DNA phosphodiesterase Back     alignment and domain information
>gnl|CDD|197291 cd09195, PLDc_mTdp1_2, Catalytic domain, repeat 2, of metazoan tyrosyl-DNA phosphodiesterase Back     alignment and domain information
>gnl|CDD|197289 cd09193, PLDc_mTdp1_1, Catalytic domain, repeat 1, of metazoan tyrosyl-DNA phosphodiesterase Back     alignment and domain information
>gnl|CDD|197290 cd09194, PLDc_yTdp1_1, Catalytic domain, repeat 1, of yeast tyrosyl-DNA phosphodiesterase Back     alignment and domain information
>gnl|CDD|197222 cd09123, PLDc_Tdp1_2, Catalytic domain, repeat 2, of tyrosyl-DNA phosphodiesterase Back     alignment and domain information
>gnl|CDD|238017 cd00060, FHA, Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins Back     alignment and domain information
>gnl|CDD|215951 pfam00498, FHA, FHA domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 491
KOG2031 519 consensus Tyrosyl-DNA phosphodiesterase [Replicati 100.0
PF06087443 Tyr-DNA_phospho: Tyrosyl-DNA phosphodiesterase; In 100.0
cd00060102 FHA Forkhead associated domain (FHA); found in euk 97.82
PF0049868 FHA: FHA domain; InterPro: IPR000253 The forkhead- 97.35
TIGR01663526 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase 97.1
PLN02927668 antheraxanthin epoxidase/zeaxanthin epoxidase 93.05
TIGR03354396 VI_FHA type VI secretion system FHA domain protein 92.82
smart0024052 FHA Forkhead associated domain. Found in eukaryoti 91.33
COG1716191 FOG: FHA domain [Signal transduction mechanisms] 89.12
PF0061428 PLDc: Phospholipase D Active site motif; InterPro: 85.34
smart0015528 PLDc Phospholipase D. Active site motifs. Phosphat 81.22
>KOG2031 consensus Tyrosyl-DNA phosphodiesterase [Replication, recombination and repair] Back     alignment and domain information 
Probab=100.00  E-value=6.7e-73  Score=586.22  Aligned_cols=386  Identities=33%  Similarity=0.564  Sum_probs=306.8

Q ss_pred             EEEecCCceEeecCC--cccccccccccccccCCcccccCCCccceeeeecccccccccCCCCccchhhhhhhhhcccCC
Q 011198           63 LVVDGTNPVVVKSGD--QRKKLSSNEHVSIADGDIIELIPGHHFFKYVTLSRSQKRVSNDGATNGELSSKKMRQQDEQDN  140 (491)
Q Consensus        63 ~~~~~~~~~~~~~~~--~~~k~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (491)
                      +++.++++..++|+.  ++.+.-...+....+++.++..+++++.+.+.+...       .              .....
T Consensus         3 ~ss~~~~~~p~~s~~~~~~s~~~~~~~isa~~~~~~~~~~n~~~~~~~~l~g~-------~--------------~~~~t   61 (519)
T KOG2031|consen    3 LSSNFNGLKPERSDVAEEKSQRKKSSRISAENDNAAPVTENHHKDDCVILKGS-------R--------------DIKLT   61 (519)
T ss_pred             cccCCCCcccccccccchhcccccCccccccCcccccccccccchhhhhcCCC-------c--------------ccccC
Confidence            567778888888754  455566678888899999999999999777766221       1              00111


Q ss_pred             CCCCCCcccccccccCCCCCCCceEEEEecC--CCCCCCCCceeechhcc---ccHhhhhhhhcccCHhhhhccCCCCCC
Q 011198          141 ENGKNSEEALCNFHVSRDKLPSTFRLLRVQG--LPAWANTSCVSIRDVIQ---GDIIVAILSNYMVDIDWLLPACPVLAK  215 (491)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~s~FrLtrv~g--~p~~~n~~~Isl~DlL~---~~L~~allfnF~~Dl~WLl~~~p~~~~  215 (491)
                      ...+...|+....+     .|.-+.++.+.+  .|.......+++.+|+.   |+++.++|||||+|++||+.+||....
T Consensus        62 ~~e~~~~~~~~~~~-----~p~~~~ft~v~~~s~~~~~s~~s~sl~~il~~i~g~~v~silfsfmvdid~Lv~~y~~~~~  136 (519)
T KOG2031|consen   62 NQEKDDSERILTND-----NPKGAVFTTVKGDSVPRYDSMGSVSLMEILADIFGTPVNSILFSFMVDIDWLVGQYPPSVR  136 (519)
T ss_pred             ccccccHHHHhccC-----CcccccccccccccccccCcccchHHHHHHHHhhCCchhheEEEEEeEHHHHHhhCcchhc
Confidence            11122223333333     334455555554  33333336677777764   589999999999999999999986445


Q ss_pred             CCeEEEEeCCCCchhhhhhhcCCCceEEecCCCCCCCCCccceeEEEEeCCccEEEEeCCCCChhcccccCCeEEeeccC
Q 011198          216 IPHVLVIHGESDGTLEHMKRNKPANWILHKPPLPISFGTHHSKAMLLIYPRGVRIIVHTANLIHVDWNNKSQGLWMQDFP  295 (491)
Q Consensus       216 ~p~v~Vvhge~~~~~~~~~~~~~~n~~l~~ppmp~~fGtHHSKmmLL~Y~dglRVVI~TANLi~~DW~~~tQ~vWiqDfP  295 (491)
                      .+.|+++||+.++.........+.+++++.+.||++|||||+|||+|+|++|+|||||||||++.||+++||++|+++++
T Consensus       137 ~~~i~l~~G~~d~~~~~~~~K~~~l~~~~~~~LpipF~thHtKm~~l~y~~G~rvvv~taNl~~~Dw~~ktQ~~w~sp~~  216 (519)
T KOG2031|consen  137 IKPITLVHGEPDEARLLAQTKAPILVTVKLASLPIPFGTHHTKMIILFYEEGCRVVVHTANLIHDDWNNKTQGFWCSPLL  216 (519)
T ss_pred             cCceEEEecCCchHHHHhhhhccceeeeecccccccccccccceEEEeccCccEEEEecCCcceecccccccceeecCCc
Confidence            55688889988733222233456789999999999999999999999999999999999999999999999999999988


Q ss_pred             CCCCCCCCCCCChHHHHHHHHHhCCCCccccCCCCCCCcccCccccccccccccceEEEEecCCCccCCCcchhcHHHHH
Q 011198          296 LKDQNNLSEECGFENDLIDYLSTLKWPEFSANLPAHGNFKINPSFFKKFNFSSAAVRLIASVPGYHTGSSLKKWGHMKLR  375 (491)
Q Consensus       296 ~~~~~s~~~~s~Fk~dL~~YL~ay~~p~~~~~~p~lg~~~i~~~~L~~yDFS~a~v~LVaSVPG~H~g~~~~~~Gh~rL~  375 (491)
                      ++.......++.|+.||++||++|++|.+.          +|+++|++||||.++|+||+||||++.|+....|||+||+
T Consensus       217 ~~~~~~g~~~~~Fk~DLi~YL~~Y~~~~l~----------~~i~~lkk~DfS~i~v~fIgStPG~f~gs~~~~WGh~kL~  286 (519)
T KOG2031|consen  217 KIGDKKGVSPTGFKQDLIEYLNSYRLPQLK----------EWIASLKKVDFSAINVRFIGSTPGKFQGSGLLSWGHNKLK  286 (519)
T ss_pred             ccccCCCCCCCchHHHHHHHHHHhccchhH----------HHHHHHHhcchhhceEEEEeecCCcccCcccccccHHHHH
Confidence            877656788999999999999999987543          3478999999999999999999999888777779999999


Q ss_pred             HHHHhccccCCCCccCEEEEecCCCcCChhHHHHHHHhccCCCCCCCCCCC--CCCCEEEcCChhhHhcCccCccCCccc
Q 011198          376 TVLQECTFEKGFKKSPLVYQFSSLGSLDEKWMAELSSSMSSGFSEDKTPLG--IGEPLIVWPTVEDVRCSLEGYAAGNAI  453 (491)
Q Consensus       376 ~vLk~~~~~~~~~~~~iv~Q~SSIGSl~~~WL~ef~~sl~~~~~~~~~~~~--~~~~~IIFPTveeVr~S~~G~~~GGsi  453 (491)
                      ++|+++......++++++||+||+|||+..|...|...+.....++..+.+  .++++||||||||||+|.+||++||||
T Consensus       287 kiL~~~~~~~~~~r~~~v~q~sS~gsl~~~~~~~~~~~f~~~l~kdt~~~gk~~~~~yiIfPTveeVrtS~~G~~~Ggsi  366 (519)
T KOG2031|consen  287 KILKEHAASPYLERTPVVGQSSSIGSLGSLWSAWFIGDFVESLAKDTTPPGKLRPPFYIIFPTVEEVRTSLLGYAGGGSL  366 (519)
T ss_pred             HHHHhhccCcccccCceeeeeeccccccchhhhhhhhhhccchhhccCCCCCCCCCeeEEcccHHHhhccccccccCcee
Confidence            999998765556889999999999999998887777777665555544443  356899999999999999999999999


Q ss_pred             cCccccch-HHhHHHHhccccCCCcCCccCCc
Q 011198          454 PSPQKNVD-KDFLKKYWAKWKASHTGRRYNID  484 (491)
Q Consensus       454 p~~~~~~~-~~~l~~~l~kW~a~~~gR~~~~~  484 (491)
                      ||..++.+ |.||++|||||+|..+||+|+|-
T Consensus       367 py~~~~~~kq~~lk~y~~kW~A~~s~R~ramP  398 (519)
T KOG2031|consen  367 PYGKNTNEKQPWLKKYLCKWKAMDSRRSRAMP  398 (519)
T ss_pred             cccchhhhhhHHHHHHHHhhhhhhhhccccCC
Confidence            99877765 57999999999999999999873

>PF06087 Tyr-DNA_phospho: Tyrosyl-DNA phosphodiesterase; InterPro: IPR010347 Covalent intermediates between topoisomerase I and DNA can become dead-end complexes that lead to cell death Back     alignment and domain information
>cd00060 FHA Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins Back     alignment and domain information
>PF00498 FHA: FHA domain; InterPro: IPR000253 The forkhead-associated (FHA) domain [] is a phosphopeptide recognition domain found in many regulatory proteins Back     alignment and domain information
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase Back     alignment and domain information
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase Back     alignment and domain information
>TIGR03354 VI_FHA type VI secretion system FHA domain protein Back     alignment and domain information
>smart00240 FHA Forkhead associated domain Back     alignment and domain information
>COG1716 FOG: FHA domain [Signal transduction mechanisms] Back     alignment and domain information
>PF00614 PLDc: Phospholipase D Active site motif; InterPro: IPR001736 Phosphatidylcholine-hydrolysing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs) Back     alignment and domain information
>smart00155 PLDc Phospholipase D Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query491
1qzq_A 483 Human Tyrosyl Dna Phosphodiesterase Length = 483 6e-43
1mu7_A 485 Crystal Structure Of A Human Tyrosyl-dna Phosphodie 1e-42
1jy1_A 464 Crystal Structure Of Human Tyrosyl-Dna Phosphodiest 2e-40
>pdb|1QZQ|A Chain A, Human Tyrosyl Dna Phosphodiesterase Length = 483 Back     alignment and structure 
Iteration: 1

 Score =  171 bits (434), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 116/335 (34%), Positives = 175/335 (52%), Gaps = 26/335 (7%)
Query: 161 PSTFRLLRVQGLPAWANTSCVSIRDVIQ---GDIIVAILSNYMVDIDWLLPACPVLAKIP 217
           P  F L RV G+    N+  + I+D++    G ++ +   NY  D+DWL+   P   +  
Sbjct: 38  PFQFYLTRVSGVKPKYNSGALHIKDILSPLFGTLVSSAQFNYCFDVDWLVKQYPPEFRKK 97
Query: 218 HVLVIHGESDGTLEHM-KRNKP-ANWILHKPPLPISFGTHHSKAMLLIYPRGVRIIVHTA 275
            +L++HG+      H+  + KP  N  L +  L I+FGTHH+K MLL+Y  G+R+++HT+
Sbjct: 98  PILLVHGDKREAKAHLHAQAKPYENISLCQAKLDIAFGTHHTKMMLLLYEEGLRVVIHTS 157
Query: 276 NLIHVDWNNKSQGLWMQD-FP-LKDQNNLSEE--CGFENDLIDYLSTLKWPEFSANLPAH 331
           NLIH DW+ K+QG+W+   +P + D  + S E    F+ DLI YL     P     +   
Sbjct: 158 NLIHADWHQKTQGIWLSPLYPRIADGTHKSGESPTHFKADLISYLMAYNAPSLKEWIDV- 216
Query: 332 GXXXXXXXXXXXXXXXXAAVRLIASVPGYHTGSSLKKWGHMKLRTVLQECTFEKGFKKS- 390
                              V LI S PG   GS    WGH +L+ +L++        +S 
Sbjct: 217 ---------IHKHDLSETNVYLIGSTPGRFQGSQKDNWGHFRLKKLLKDHASSMPNAESW 267
Query: 391 PLVYQFSSLGSL---DEKWM-AELXXXXXXXXXEDKTPLGIGEPL-IVWPTVEDVRCSLE 445
           P+V QFSS+GSL   + KW+ +E          E KTP     PL +++P+VE+VR SLE
Sbjct: 268 PVVGQFSSVGSLGADESKWLCSEFKESMLTLGKESKTPGKSSVPLYLIYPSVENVRTSLE 327
Query: 446 GYAAGNAIP-SPQKNVDKDFLKKYWAKWKASHTGR 479
           GY AG ++P S Q    +++L  Y+ KW A  +GR
Sbjct: 328 GYPAGGSLPYSIQTAEKQNWLHSYFHKWSAETSGR 362
>pdb|1MU7|A Chain A, Crystal Structure Of A Human Tyrosyl-dna Phosphodiesterase (tdp1)- Tungstate Complex Length = 485 Back     alignment and structure
>pdb|1JY1|A Chain A, Crystal Structure Of Human Tyrosyl-Dna Phosphodiesterase (Tdp1) Length = 464 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query491
1jy1_A 464 TDP1, tyrosyl-DNA phosphodiesterase; PLD superfami 4e-92
3sq7_A 470 Tyrosyl-DNA phosphodiesterase 1; DNA binding, nucl 6e-65
1q32_A 544 TDP1P;, tyrosyl-DNA phosphodiesterase; DNA repair, 3e-63
3kt9_A102 Aprataxin; FHA domain, beta sandwich, beta sheet, 3e-15
1yj5_C143 5' polynucleotide kinase-3' phosphatase FHA domai; 6e-14
2brf_A110 Bifunctional polynucleotide phosphatase/kinase; hy 9e-14
1ujx_A119 Polynucleotide kinase 3'-phosphatase; DNA repair, 2e-13
3va4_A132 Mediator of DNA damage checkpoint protein 1; cell 9e-08
1r21_A128 Antigen KI-67; beta sandwich, cell cycle; NMR {Hom 3e-05
1mzk_A139 Kinase associated protein phosphatase; beta sandwi 5e-05
1g6g_A127 Protein kinase RAD53; beta-sandwich, phosphopeptid 7e-05
3oun_A157 Putative uncharacterized protein TB39.8; peptidogl 7e-05
1g3g_A164 Protien kinase SPK1; FHA domain, RAD53, phosphopep 2e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
>1jy1_A TDP1, tyrosyl-DNA phosphodiesterase; PLD superfamily, hydrolase; 1.69A {Homo sapiens} SCOP: d.136.1.3 d.136.1.3 PDB: 1rff_A* 1mu9_A 1nop_A 1mu7_A* 1rfi_A* 1rg1_A* 1rg2_A* 1rgt_A* 1rgu_A* 1rh0_A* 1qzq_A Length = 464 Back     alignment and structure
 Score =  287 bits (734), Expect = 4e-92
 Identities = 112/353 (31%), Positives = 179/353 (50%), Gaps = 26/353 (7%)

Query: 144 KNSEEALCNFHVSRDKLPSTFRLLRVQGLPAWANTSCVSIRDVIQ---GDIIVAILSNYM 200
           ++  E    + +     P  F L RV G+    N+  + I+D++    G ++ +   NY 
Sbjct: 2   EDPGEGQDIWDMLDKGNPFQFYLTRVSGVKPKYNSGALHIKDILSPLFGTLVSSAQFNYC 61

Query: 201 VDIDWLLPACPVLAKIPHVLVIHGESDGTLEHMKRNKPA--NWILHKPPLPISFGTHHSK 258
            D+DWL+   P   +   +L++HG+      H+        N  L +  L I+FGTHH+K
Sbjct: 62  FDVDWLVKQYPPEFRKKPILLVHGDKREAKAHLHAQAKPYENISLCQAKLDIAFGTHHTK 121

Query: 259 AMLLIYPRGVRIIVHTANLIHVDWNNKSQGLWMQDFPLKDQNNLSEE----CGFENDLID 314
            MLL+Y  G+R+++HT+NLIH DW+ K+QG+W+     +  +   +       F+ +LI 
Sbjct: 122 MMLLLYEEGLRVVIHTSNLIHADWHQKTQGIWLSPLYPRIADGTHKSGESPTHFKANLIS 181

Query: 315 YLSTLKWPEFSANLPAHGNFKINPSFFKKFNFSSAAVRLIASVPGYHTGSSLKKWGHMKL 374
           YL+    P     +              K + S   V LI S PG   GS    WGH +L
Sbjct: 182 YLTAYNAPSLKEWI----------DVIHKHDLSETNVYLIGSTPGRFQGSQKDNWGHFRL 231

Query: 375 RTVLQECTFEKGF-KKSPLVYQFSSLGSL---DEKWM-AELSSSMSSGFSEDKTPLGIGE 429
           + +L++        +  P+V QFSS+GSL   + KW+ +E   SM +   E KTP     
Sbjct: 232 KKLLKDHASSMPNAESWPVVGQFSSVGSLGADESKWLCSEFKESMLTLGKESKTPGKSSV 291

Query: 430 PL-IVWPTVEDVRCSLEGYAAGNAIPSPQKNVDK-DFLKKYWAKWKASHTGRR 480
           PL +++P+VE+VR SLEGY AG ++P   +  +K ++L  Y+ KW A  +GR 
Sbjct: 292 PLYLIYPSVENVRTSLEGYPAGGSLPYSIQTAEKQNWLHSYFHKWSAETSGRS 344
>3sq7_A Tyrosyl-DNA phosphodiesterase 1; DNA binding, nuclear, hydrolase; 2.00A {Saccharomyces cerevisiae} PDB: 3sq5_A 3sq8_A* 3sq3_A Length = 470 Back     alignment and structure
>1q32_A TDP1P;, tyrosyl-DNA phosphodiesterase; DNA repair, replication, transcription, hydrolase, replication,transcription, hydrolase; 2.03A {Saccharomyces cerevisiae} SCOP: d.136.1.3 d.136.1.3 Length = 544 Back     alignment and structure
>3kt9_A Aprataxin; FHA domain, beta sandwich, beta sheet, AMP hydrolase, alternative splicing, disease mutation, DNA damage, DNA repair, DNA-binding; 1.65A {Homo sapiens} Length = 102 Back     alignment and structure
>1yj5_C 5' polynucleotide kinase-3' phosphatase FHA domai; beta sandwich, P-loop, transferase; 2.80A {Mus musculus} SCOP: b.26.1.2 Length = 143 Back     alignment and structure
>2brf_A Bifunctional polynucleotide phosphatase/kinase; hydrolase/transferase, FHA, forkhead-associated, PNKP, PNK, polynucleotide kinase 3' phosphatase; 1.40A {Homo sapiens} SCOP: b.26.1.2 PDB: 2w3o_A* 1yjm_A* Length = 110 Back     alignment and structure
>1ujx_A Polynucleotide kinase 3'-phosphatase; DNA repair, FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif; NMR {Mus musculus} SCOP: b.26.1.2 Length = 119 Back     alignment and structure
>3va4_A Mediator of DNA damage checkpoint protein 1; cell cycle, FHA domain, DNA-damage, CHK2 and MDC1 dimerizati; HET: TPO; 1.54A {Mus musculus} PDB: 3va1_A* 3umz_A 3unm_A 3unn_A* 3uot_A* 3un0_B Length = 132 Back     alignment and structure
>1r21_A Antigen KI-67; beta sandwich, cell cycle; NMR {Homo sapiens} SCOP: b.26.1.2 PDB: 2aff_A* Length = 128 Back     alignment and structure
>1g6g_A Protein kinase RAD53; beta-sandwich, phosphopeptide complex, cell cycle; HET: TPO; 1.60A {Saccharomyces cerevisiae} SCOP: b.26.1.2 Length = 127 Back     alignment and structure
>3oun_A Putative uncharacterized protein TB39.8; peptidoglycan, Ser/Thr kinase, pseudokinase, FHA domain, REG phosphorylation; HET: TPO; 2.71A {Mycobacterium tuberculosis} Length = 157 Back     alignment and structure
>1g3g_A Protien kinase SPK1; FHA domain, RAD53, phosphopeptide, phosphoprotein, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1j4o_A 1j4p_A* 1j4q_A* 1k3j_A 1k3n_A* 1k3q_A* 2a0t_A* 2jqi_A* Length = 164 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query491
1jy1_A 464 TDP1, tyrosyl-DNA phosphodiesterase; PLD superfami 100.0
1q32_A 544 TDP1P;, tyrosyl-DNA phosphodiesterase; DNA repair, 100.0
3sq7_A 470 Tyrosyl-DNA phosphodiesterase 1; DNA binding, nucl 100.0
2brf_A110 Bifunctional polynucleotide phosphatase/kinase; hy 99.65
1ujx_A119 Polynucleotide kinase 3'-phosphatase; DNA repair, 99.61
1yj5_C143 5' polynucleotide kinase-3' phosphatase FHA domai; 99.59
3kt9_A102 Aprataxin; FHA domain, beta sandwich, beta sheet, 99.44
1lgp_A116 Cell cycle checkpoint protein CHFR; FHA, tungstate 98.02
1g6g_A127 Protein kinase RAD53; beta-sandwich, phosphopeptid 97.44
1gxc_A149 CHK2, CDS1, serine/threonine-protein kinase CHK2; 97.27
3va4_A132 Mediator of DNA damage checkpoint protein 1; cell 97.11
2jqj_A151 DNA damage response protein kinase DUN1; protein/p 97.0
1dmz_A158 Protein (protein kinase SPK1); beta-sandwich, anti 96.87
2jpe_A140 Nuclear inhibitor of protein phosphatase 1; FHA do 96.71
2xt9_B115 Putative signal transduction protein GARA; lyase-s 96.64
1wln_A120 Afadin; beta sandwich, FHA domain, structural geno 96.59
3fm8_A124 Kinesin-like protein KIF13B; kinesin, GAP, GTPase 96.58
1uht_A118 Expressed protein; FHA domain, beta-sandwich, anti 96.51
2pie_A138 E3 ubiquitin-protein ligase RNF8; FHA domain, comp 96.42
3po8_A100 RV0020C protein, putative uncharacterized protein 96.36
1qu5_A182 Protein kinase SPK1; FHA, RAD53, transferase; NMR 96.34
2csw_A145 Ubiquitin ligase protein RNF8; 11-stranded beta sa 96.32
2kb3_A143 Oxoglutarate dehydrogenase inhibitor; forkhead-ass 96.31
1r21_A128 Antigen KI-67; beta sandwich, cell cycle; NMR {Hom 96.3
1mzk_A139 Kinase associated protein phosphatase; beta sandwi 96.15
3gqs_A106 Adenylate cyclase-like protein; FHA domain, struct 96.12
3oun_A157 Putative uncharacterized protein TB39.8; peptidogl 96.07
1g3g_A164 Protien kinase SPK1; FHA domain, RAD53, phosphopep 96.01
2kfu_A162 RV1827 PThr 22; FHA domain, phosphorylation, intra 95.97
4ejq_A154 Kinesin-like protein KIF1A; homodimer, FHA domain, 95.64
2ff4_A388 Probable regulatory protein EMBR; winged-helix, te 95.35
3hx1_A131 SLR1951 protein; P74513_SYNY3, adenylate cyclase-l 95.28
4h87_A130 Kanadaptin; FHA domain of PF00498, mRNA processing 94.82
3els_A158 PRE-mRNA leakage protein 1; intrinsically unstruct 94.71
3i6u_A419 CDS1, serine/threonine-protein kinase CHK2; Ser/Th 93.94
3elv_A205 PRE-mRNA leakage protein 1; intrinsically unstruct 93.16
4egx_A184 Kinesin-like protein KIF1A; FHA domain, transport 90.99
4a0e_A123 YSCD, type III secretion protein; transport protei 84.07
>1jy1_A TDP1, tyrosyl-DNA phosphodiesterase; PLD superfamily, hydrolase; 1.69A {Homo sapiens} SCOP: d.136.1.3 d.136.1.3 PDB: 1rff_A* 1mu9_A 1nop_A 1mu7_A* 1rfi_A* 1rg1_A* 1rg2_A* 1rgt_A* 1rgu_A* 1rh0_A* 1qzq_A Back     alignment and structure
Probab=100.00  E-value=4.5e-80  Score=656.56  Aligned_cols=328  Identities=34%  Similarity=0.644  Sum_probs=278.9

Q ss_pred             CCcccccccccCCCCCCCceEEEEecCCCCCCCCCceeechhccc---cHhhhhhhhcccCHhhhhccCCC-CCCCCeEE
Q 011198          145 NSEEALCNFHVSRDKLPSTFRLLRVQGLPAWANTSCVSIRDVIQG---DIIVAILSNYMVDIDWLLPACPV-LAKIPHVL  220 (491)
Q Consensus       145 ~~~~~~~~~~~~~~~~~s~FrLtrv~g~p~~~n~~~Isl~DlL~~---~L~~allfnF~~Dl~WLl~~~p~-~~~~p~v~  220 (491)
                      ..+|.+++|+......|.+|+||+|+|++.++|.++|+|+|||++   +|+.|++||||+|++|||++|+. ++++| |+
T Consensus         3 ~~~~~~~~~~~~~~~~p~~~~l~~i~~~~~~~n~~~itl~diL~~~~g~l~~a~~~nf~~D~~WLl~~~~~~~~~~~-v~   81 (464)
T 1jy1_A            3 DPGEGQDIWDMLDKGNPFQFYLTRVSGVKPKYNSGALHIKDILSPLFGTLVSSAQFNYCFDVDWLVKQYPPEFRKKP-IL   81 (464)
T ss_dssp             CTTTTCCGGGTSCTTCSSCEEEBCCTTSCGGGGTTCBCHHHHTSGGGCCEEEEEEECSCBCHHHHHHHSCGGGTTSC-EE
T ss_pred             CcccccchhhhhcccCCceEEEEeecCCCcccCCCceeHHHHhCCccccHHHHHhHHhHHhHHHHHhhCcccccCCc-EE
Confidence            457889999999988889999999999999999999999999984   69999999999999999999974 56675 78


Q ss_pred             EEeCCCCchhhhh--hhcCCCceEEecCCCCCCCCCccceeEEEEeCCccEEEEeCCCCChhcccccCCeEEeec-cCCC
Q 011198          221 VIHGESDGTLEHM--KRNKPANWILHKPPLPISFGTHHSKAMLLIYPRGVRIIVHTANLIHVDWNNKSQGLWMQD-FPLK  297 (491)
Q Consensus       221 Vvhge~~~~~~~~--~~~~~~n~~l~~ppmp~~fGtHHSKmmLL~Y~dglRVVI~TANLi~~DW~~~tQ~vWiqD-fP~~  297 (491)
                      ||||+++.....+  .....+||++|.|+||++|||||||||||+|+||||||||||||+++||+++||+||+|| ||++
T Consensus        82 iv~g~~~~~~~~l~~~~~~~~nv~~~~p~mp~~fGthHsKmmiL~y~~glRVVI~TANL~~~DW~~~tQ~vW~sd~lP~~  161 (464)
T 1jy1_A           82 LVHGDKREAKAHLHAQAKPYENISLCQAKLDIAFGTHHTKMMLLLYEEGLRVVIHTSNLIHADWHQKTQGIWLSPLYPRI  161 (464)
T ss_dssp             EEECCCHHHHHHHHHHHTTCTTEEEEECCCCSTTCCBCCCEEEEEESSCEEEEEECCCBSGGGGTSSBCEEEECCCBCBC
T ss_pred             EEeCCCcccchhhHHhhccCCCeEEEeCCCCCcccccchhhheeecCCceEEEEeCCCCChhHhccccceEEecccCcCC
Confidence            8899865432222  224567999999999999999999999999999999999999999999999999999999 7987


Q ss_pred             CCCC---CCCCCChHHHHHHHHHhCCCCccccCCCCCCCcccCccccccccccccceEEEEecCCCccCCCcchhcHHHH
Q 011198          298 DQNN---LSEECGFENDLIDYLSTLKWPEFSANLPAHGNFKINPSFFKKFNFSSAAVRLIASVPGYHTGSSLKKWGHMKL  374 (491)
Q Consensus       298 ~~~s---~~~~s~Fk~dL~~YL~ay~~p~~~~~~p~lg~~~i~~~~L~~yDFS~a~v~LVaSVPG~H~g~~~~~~Gh~rL  374 (491)
                      +...   .+++++|++||++||++|+++....          +++.|++||||.++|+||+||||+|.|.++.+|||++|
T Consensus       162 ~~~~~~~~~~~~~Fk~dL~~yL~ay~~~~~~~----------~i~~L~~~DFS~~~v~LVaSvPG~h~~~~~~~~G~~~L  231 (464)
T 1jy1_A          162 ADGTHKSGESPTHFKANLISYLTAYNAPSLKE----------WIDVIHKHDLSETNVYLIGSTPGRFQGSQKDNWGHFRL  231 (464)
T ss_dssp             CTTCCCCCCCTTCHHHHHHHHHHTTCCGGGHH----------HHHHHHTBCCTTCCSEEEEECSEEEEGGGGGGSHHHHH
T ss_pred             CccccccCCCCCchHHHHHHHHHHhCCchhHH----------HHHHHHhcCCcccCcEEEEeCCcCCcCCcchhhhHHHH
Confidence            5433   3678999999999999999864322          26889999999999999999999999999999999999


Q ss_pred             HHHHHhccccCC-CCccCEEEEecCCCcCC---hhHH-HHHHHhccCCCCCCCCC-CCCCCCEEEcCChhhHhcCccCcc
Q 011198          375 RTVLQECTFEKG-FKKSPLVYQFSSLGSLD---EKWM-AELSSSMSSGFSEDKTP-LGIGEPLIVWPTVEDVRCSLEGYA  448 (491)
Q Consensus       375 ~~vLk~~~~~~~-~~~~~iv~Q~SSIGSl~---~~WL-~ef~~sl~~~~~~~~~~-~~~~~~~IIFPTveeVr~S~~G~~  448 (491)
                      +++|+++++..+ .+.++|+||+||||+|+   .+|| ++|+.+|++...+.+.+ ...++++|||||+||||+|.+||.
T Consensus       232 ~~~L~~~~~~~~~~~~~~i~~Q~SSIGslg~~~~~Wl~~~f~~sl~~~~~~~~~~~~~~~~~~iifPT~e~Vr~S~~G~~  311 (464)
T 1jy1_A          232 KKLLKDHASSMPNAESWPVVGQFSSVGSLGADESKWLCSEFKESMLTLGKESKTPGKSSVPLYLIYPSVENVRTSLEGYP  311 (464)
T ss_dssp             HHHHHHHC-----CCSCCEEEECSCBCCCCSSTTTTTTTTHHHHHTCCC---------CCCEEEECCBHHHHHTSSSCGG
T ss_pred             HHHHHHhccCCCccCCCcEEEEeecccccCcchhHHHHHHHHHHhhhhcccccccccCCCceEEEcCCHHHHHhcccccC
Confidence            999999876432 35789999999999998   4899 68999998753222111 124679999999999999999999


Q ss_pred             CCccccCccccch-HHhHHHHhccccCCCcCCccCC
Q 011198          449 AGNAIPSPQKNVD-KDFLKKYWAKWKASHTGRRYNI  483 (491)
Q Consensus       449 ~GGsip~~~~~~~-~~~l~~~l~kW~a~~~gR~~~~  483 (491)
                      +||||||+.++++ ++||++|||+|+++..||.+++
T Consensus       312 ~ggsi~~~~~~~~~~~~l~~~l~~w~~~~~~R~~a~  347 (464)
T 1jy1_A          312 AGGSLPYSIQTAEKQNWLHSYFHKWSAETSGRSNAM  347 (464)
T ss_dssp             GGGGSCCCHHHHTTCGGGGGGEECCCCGGGTCTTSC
T ss_pred             CcceeeccchhhhhhhhhHHHHHHhccCccCCCCcC
Confidence            9999999866554 5799999999999999998865
>1q32_A TDP1P;, tyrosyl-DNA phosphodiesterase; DNA repair, replication, transcription, hydrolase, replication,transcription, hydrolase; 2.03A {Saccharomyces cerevisiae} SCOP: d.136.1.3 d.136.1.3 Back     alignment and structure
>3sq7_A Tyrosyl-DNA phosphodiesterase 1; DNA binding, nuclear, hydrolase; 2.00A {Saccharomyces cerevisiae} PDB: 3sq5_A 3sq8_A* 3sq3_A Back     alignment and structure
>2brf_A Bifunctional polynucleotide phosphatase/kinase; hydrolase/transferase, FHA, forkhead-associated, PNKP, PNK, polynucleotide kinase 3' phosphatase; 1.40A {Homo sapiens} SCOP: b.26.1.2 PDB: 2w3o_A* 1yjm_A* Back     alignment and structure
>1ujx_A Polynucleotide kinase 3'-phosphatase; DNA repair, FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif; NMR {Mus musculus} SCOP: b.26.1.2 Back     alignment and structure
>1yj5_C 5' polynucleotide kinase-3' phosphatase FHA domai; beta sandwich, P-loop, transferase; 2.80A {Mus musculus} SCOP: b.26.1.2 Back     alignment and structure
>3kt9_A Aprataxin; FHA domain, beta sandwich, beta sheet, AMP hydrolase, alternative splicing, disease mutation, DNA damage, DNA repair, DNA-binding; 1.65A {Homo sapiens} SCOP: b.26.1.0 Back     alignment and structure
>1lgp_A Cell cycle checkpoint protein CHFR; FHA, tungstate, domain swapping; 2.00A {Homo sapiens} SCOP: b.26.1.2 PDB: 1lgq_A Back     alignment and structure
>1g6g_A Protein kinase RAD53; beta-sandwich, phosphopeptide complex, cell cycle; HET: TPO; 1.60A {Saccharomyces cerevisiae} SCOP: b.26.1.2 Back     alignment and structure
>1gxc_A CHK2, CDS1, serine/threonine-protein kinase CHK2; phosphoprotein-binding domain, checkpoint kinase, transferase; HET: TPO; 2.7A {Homo sapiens} SCOP: b.26.1.2 Back     alignment and structure
>3va4_A Mediator of DNA damage checkpoint protein 1; cell cycle, FHA domain, DNA-damage, CHK2 and MDC1 dimerizati; HET: TPO; 1.54A {Mus musculus} PDB: 3va1_A* 3umz_A 3unm_A 3unn_A* 3uot_A* 3un0_B Back     alignment and structure
>2jqj_A DNA damage response protein kinase DUN1; protein/phosphopeptide, cell cycle; HET: DNA; NMR {Saccharomyces cerevisiae} PDB: 2jql_A* Back     alignment and structure
>1dmz_A Protein (protein kinase SPK1); beta-sandwich, antiparallel beta-sheets, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1fhq_A 1fhr_A* 1j4k_A* 1j4l_A* 1k2m_A* 1k2n_A* Back     alignment and structure
>2jpe_A Nuclear inhibitor of protein phosphatase 1; FHA domain, NIPP1, mRNA splicing, transcription; NMR {Mus musculus} Back     alignment and structure
>2xt9_B Putative signal transduction protein GARA; lyase-signaling protein complex, KDH, KGD; HET: TPP; 2.20A {Mycobacterium smegmatis} Back     alignment and structure
>1wln_A Afadin; beta sandwich, FHA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.26.1.2 Back     alignment and structure
>3fm8_A Kinesin-like protein KIF13B; kinesin, GAP, GTPase activation, structural genomics consort ATP-binding, cytoskeleton, microtubule, motor protein, NUCL binding; 2.30A {Homo sapiens} PDB: 3mdb_A* Back     alignment and structure
>1uht_A Expressed protein; FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.26.1.2 Back     alignment and structure
>2pie_A E3 ubiquitin-protein ligase RNF8; FHA domain, complex, ligase, signaling protein; HET: TPO; 1.35A {Homo sapiens} SCOP: b.26.1.2 Back     alignment and structure
>3po8_A RV0020C protein, putative uncharacterized protein TB39.8; FHA domain, synthetic peptide, peptide binding protein; 1.50A {Mycobacterium tuberculosis} SCOP: b.26.1.0 PDB: 3poa_A* 2lc1_A Back     alignment and structure
>1qu5_A Protein kinase SPK1; FHA, RAD53, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 Back     alignment and structure
>2csw_A Ubiquitin ligase protein RNF8; 11-stranded beta sandwich, ring finger protein 8, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.26.1.2 Back     alignment and structure
>2kb3_A Oxoglutarate dehydrogenase inhibitor; forkhead-associated domain, kinase substrate, GARA, FHA, cytoplasm, phosphoprotein; HET: TPO; NMR {Corynebacterium glutamicum} PDB: 2kb4_A Back     alignment and structure
>1r21_A Antigen KI-67; beta sandwich, cell cycle; NMR {Homo sapiens} SCOP: b.26.1.2 PDB: 2aff_A* Back     alignment and structure
>3gqs_A Adenylate cyclase-like protein; FHA domain, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.20A {Chlamydia trachomatis} Back     alignment and structure
>3oun_A Putative uncharacterized protein TB39.8; peptidoglycan, Ser/Thr kinase, pseudokinase, FHA domain, REG phosphorylation; HET: TPO; 2.71A {Mycobacterium tuberculosis} Back     alignment and structure
>1g3g_A Protien kinase SPK1; FHA domain, RAD53, phosphopeptide, phosphoprotein, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1j4o_A 1j4p_A* 1j4q_A* 1k3j_A 1k3n_A* 1k3q_A* 2a0t_A* 2jqi_A* Back     alignment and structure
>2kfu_A RV1827 PThr 22; FHA domain, phosphorylation, intramolecular interaction, glutamate metabolism, phosphoprotein, protein binding; HET: TPO; NMR {Mycobacterium tuberculosis} PDB: 2kkl_A Back     alignment and structure
>4ejq_A Kinesin-like protein KIF1A; homodimer, FHA domain, transport protein; 1.89A {Homo sapiens} PDB: 2eh0_A 2g1l_A Back     alignment and structure
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* Back     alignment and structure
>3hx1_A SLR1951 protein; P74513_SYNY3, adenylate cyclase-like protein, NESG, structural genomics, PSI-2, protein structure initiative; 2.50A {Synechocystis SP} Back     alignment and structure
>4h87_A Kanadaptin; FHA domain of PF00498, mRNA processing, nucleus, structural joint center for structural genomics, JCSG, protein structu initiative; HET: SO4; 1.55A {Homo sapiens} Back     alignment and structure
>3els_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 1.80A {Saccharomyces cerevisiae} Back     alignment and structure
>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A Back     alignment and structure
>3elv_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 2.40A {Saccharomyces cerevisiae} PDB: 2jkd_A Back     alignment and structure
>4egx_A Kinesin-like protein KIF1A; FHA domain, transport protein; 2.51A {Homo sapiens} Back     alignment and structure
>4a0e_A YSCD, type III secretion protein; transport protein, SAD phasing, type III secretion system; 2.04A {Yersinia pestis} PDB: 4d9v_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 491
d1q32a1215 d.136.1.3 (A:79-293) Tyrosyl-DNA phosphodiesterase 5e-60
d1jy1a1206 d.136.1.3 (A:145-350) Tyrosyl-DNA phosphodiesteras 4e-54
d1jy1a2 258 d.136.1.3 (A:351-608) Tyrosyl-DNA phosphodiesteras 1e-38
d1q32a2 237 d.136.1.3 (A:302-538) Tyrosyl-DNA phosphodiesteras 3e-11
d2brfa1101 b.26.1.2 (A:8-108) Polynucleotide kinase 3'-phosph 0.001
d2ff4a399 b.26.1.2 (A:284-382) Probable regulatory protein E 0.002
>d1q32a1 d.136.1.3 (A:79-293) Tyrosyl-DNA phosphodiesterase TDP1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 215 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Phospholipase D/nuclease
superfamily: Phospholipase D/nuclease
family: Tyrosyl-DNA phosphodiesterase TDP1
domain: Tyrosyl-DNA phosphodiesterase TDP1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  194 bits (494), Expect = 5e-60
 Identities = 37/227 (16%), Positives = 83/227 (36%), Gaps = 24/227 (10%)

Query: 162 STFRLLRVQ----GLPAWANTSCVSIRDVIQ-GDIIVAILSNYMVDIDWLLPACPV-LAK 215
           + F+L++                ++++D+     +  +IL ++  ++D+LL      +  
Sbjct: 2   AVFKLMKSDFYEREDFMGEVEDMITLKDIFGTETLKRSILFSFQYELDFLLRQFHQNVEN 61

Query: 216 IPHVLVIHGESDGT---LEHMKRNKPANWILHKPPLPISFGTHHSKAMLLIYPRG-VRII 271
           I  V             ++           L +  +P  F +HH+K ++  Y  G  +I 
Sbjct: 62  ITIVGQKGTIMPIEARAMDATLAVILKKVKLIEITMP-PFASHHTKLIINFYDNGECKIF 120

Query: 272 VHTANLIHVDWNNKSQGLWMQDFPLKDQNNLSEECGFENDLIDYLSTLKWPEFSANLPAH 331
           + + N   ++ N   Q  W        +  L     F+  LI+YL++    +    +   
Sbjct: 121 LPSNNFTSMETNLPQQVCWCSPLLKIGKEGLP--VPFKRSLIEYLNSYHLKDIDELITK- 177

Query: 332 GNFKINPSFFKKFNFSSAA-VRLIASVPGYHTGSSLKKWGHMKLRTV 377
                     ++ NF+  + +  + S P     S L  + + KL  +
Sbjct: 178 --------SVEEVNFAPLSELEFVYSTPSKFQSSGLLSF-YNKLEKL 215
>d1jy1a1 d.136.1.3 (A:145-350) Tyrosyl-DNA phosphodiesterase TDP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 206 Back     information, alignment and structure
>d1jy1a2 d.136.1.3 (A:351-608) Tyrosyl-DNA phosphodiesterase TDP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 258 Back     information, alignment and structure
>d1q32a2 d.136.1.3 (A:302-538) Tyrosyl-DNA phosphodiesterase TDP1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 237 Back     information, alignment and structure
>d2brfa1 b.26.1.2 (A:8-108) Polynucleotide kinase 3'-phosphatase {Human (Homo sapiens) [TaxId: 9606]} Length = 101 Back     information, alignment and structure
>d2ff4a3 b.26.1.2 (A:284-382) Probable regulatory protein EmbR, C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 99 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query491
d1q32a1215 Tyrosyl-DNA phosphodiesterase TDP1 {Baker's yeast 100.0
d1jy1a1206 Tyrosyl-DNA phosphodiesterase TDP1 {Human (Homo sa 100.0
d1jy1a2 258 Tyrosyl-DNA phosphodiesterase TDP1 {Human (Homo sa 99.96
d1q32a2237 Tyrosyl-DNA phosphodiesterase TDP1 {Baker's yeast 99.58
d2brfa1101 Polynucleotide kinase 3'-phosphatase {Human (Homo 98.44
d1gxca_116 Chk2 kinase {Human (Homo sapiens) [TaxId: 9606]} 97.6
d1lgpa_113 Cell cycle checkpoint protein Chfr {Human (Homo sa 97.26
d2ff4a399 Probable regulatory protein EmbR, C-terminal domai 97.25
d2affa198 Antigen ki-67 {Human (Homo sapiens) [TaxId: 9606]} 97.16
d2piea1127 Ubiquitin ligase protein RNF8 {Human (Homo sapiens 96.79
d1wlna1107 Afadin {Mouse (Mus musculus) [TaxId: 10090]} 96.77
d1uhta_118 FHA domain containing protein At4G14490 {Thale cre 96.58
d1g6ga_127 Phosphotyrosine binding domain of Rad53 {Baker's y 96.26
d1dmza_158 Phosphotyrosine binding domain of Rad53 {Baker's y 95.74
d1mzka_122 Kinase associated protein phosphatase {Thale cress 94.94
d2g1la1102 Kinesin-like protein kif1c {Human (Homo sapiens) [ 94.23
>d1q32a1 d.136.1.3 (A:79-293) Tyrosyl-DNA phosphodiesterase TDP1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Phospholipase D/nuclease
superfamily: Phospholipase D/nuclease
family: Tyrosyl-DNA phosphodiesterase TDP1
domain: Tyrosyl-DNA phosphodiesterase TDP1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.8e-54  Score=414.50  Aligned_cols=202  Identities=18%  Similarity=0.294  Sum_probs=160.8

Q ss_pred             CceEEEEecCCCCC----CCCCceeechhccc-cHhhhhhhhcccCHhhhhccCCC-CCCCCeEEEEeCCCC--chh-h-
Q 011198          162 STFRLLRVQGLPAW----ANTSCVSIRDVIQG-DIIVAILSNYMVDIDWLLPACPV-LAKIPHVLVIHGESD--GTL-E-  231 (491)
Q Consensus       162 s~FrLtrv~g~p~~----~n~~~Isl~DlL~~-~L~~allfnF~~Dl~WLl~~~p~-~~~~p~v~Vvhge~~--~~~-~-  231 (491)
                      ..|||.+..-+...    .|.|+|+|+|||++ +|++|++||||+|++||+++||. .+++ .++.++|+..  ... . 
T Consensus         2 ~~f~l~~~~~~d~~~~~~~~~d~I~l~evl~~~~L~~a~l~nF~~Di~wLl~~~~~~~~~~-~~v~~~~~~~~~~~~~~~   80 (215)
T d1q32a1           2 AVFKLMKSDFYEREDFMGEVEDMITLKDIFGTETLKRSILFSFQYELDFLLRQFHQNVENI-TIVGQKGTIMPIEARAMD   80 (215)
T ss_dssp             CEEEEECCTTTTCCC-------EECHHHHHCCTTEEEEEEECSCEEHHHHHTTSCTTCCEE-EEEEETTCEECCCGGGCC
T ss_pred             CceEEecccccccCcccCCCCCeeehHHhcCchHHHHHHHHHHHhhHHHHHHhCCcccccc-EEEEEcCCcccccchhhh
Confidence            46999998777653    48899999999986 79999999999999999999974 2222 2333344321  111 1 


Q ss_pred             hhhhcCCCceEEecCCCCCCCCCccceeEEEEeCCc-cEEEEeCCCCChhcccccCCeEEeeccCCCCCCCCCCCCChHH
Q 011198          232 HMKRNKPANWILHKPPLPISFGTHHSKAMLLIYPRG-VRIIVHTANLIHVDWNNKSQGLWMQDFPLKDQNNLSEECGFEN  310 (491)
Q Consensus       232 ~~~~~~~~n~~l~~ppmp~~fGtHHSKmmLL~Y~dg-lRVVI~TANLi~~DW~~~tQ~vWiqDfP~~~~~s~~~~s~Fk~  310 (491)
                      ......++|+++|.|+|| +|||||||||||+|+|| ||||||||||+++||+++||+||+||||.+.  +.+.+++|+.
T Consensus        81 ~~~~~~~~nv~~~~~~mp-~fGtHHSKmmiL~y~dg~lRVVI~TANLi~~DW~~~tQ~vW~sp~l~~~--s~~~~~~F~~  157 (215)
T d1q32a1          81 ATLAVILKKVKLIEITMP-PFASHHTKLIINFYDNGECKIFLPSNNFTSMETNLPQQVCWCSPLLKIG--KEGLPVPFKR  157 (215)
T ss_dssp             HHHHHHHTTEEEEEECCC-TTCCBCCCEEEEEESTTEEEEEEESSCBSHHHHHSSBCEEEECCCEEEC--CCSSCCHHHH
T ss_pred             hhhhccCCceEEEeccCC-CcccccceeEEEEecCCCEEEEEecCCCChhhhcceeeeEEeCCCccCC--CCCCCCchHH
Confidence            111123469999999999 99999999999999997 9999999999999999999999999987653  3456799999


Q ss_pred             HHHHHHHhCCCCccccCCCCCCCcccCcccccccccccc-ceEEEEecCCCccCCCcchhcHHHHHHH
Q 011198          311 DLIDYLSTLKWPEFSANLPAHGNFKINPSFFKKFNFSSA-AVRLIASVPGYHTGSSLKKWGHMKLRTV  377 (491)
Q Consensus       311 dL~~YL~ay~~p~~~~~~p~lg~~~i~~~~L~~yDFS~a-~v~LVaSVPG~H~g~~~~~~Gh~rL~~v  377 (491)
                      ||++||++|+.++...+         ..+.|++||||++ +|+||+||||+|.|+++.+| |.+|+++
T Consensus       158 dL~~yL~~y~~~~~~~~---------i~~~l~~~Dfs~~~~v~lV~SvPG~~~g~~~~~~-~~~Lr~~  215 (215)
T d1q32a1         158 SLIEYLNSYHLKDIDEL---------ITKSVEEVNFAPLSELEFVYSTPSKFQSSGLLSF-YNKLEKL  215 (215)
T ss_dssp             HHHHHHHTTCCHHHHHH---------THHHHHTEECGGGTTCEEEEECCCTTSCCHHHHH-HHHHHHT
T ss_pred             HHHHHHHHcCCchhhHH---------HHHHHHHcCcccCCCEEEEEeCCcCccCCchhhH-HHHHhcC
Confidence            99999999987654321         1367999999998 79999999999999999999 8899874
>d1jy1a1 d.136.1.3 (A:145-350) Tyrosyl-DNA phosphodiesterase TDP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jy1a2 d.136.1.3 (A:351-608) Tyrosyl-DNA phosphodiesterase TDP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1q32a2 d.136.1.3 (A:302-538) Tyrosyl-DNA phosphodiesterase TDP1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2brfa1 b.26.1.2 (A:8-108) Polynucleotide kinase 3'-phosphatase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gxca_ b.26.1.2 (A:) Chk2 kinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1lgpa_ b.26.1.2 (A:) Cell cycle checkpoint protein Chfr {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ff4a3 b.26.1.2 (A:284-382) Probable regulatory protein EmbR, C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2affa1 b.26.1.2 (A:3-100) Antigen ki-67 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2piea1 b.26.1.2 (A:13-139) Ubiquitin ligase protein RNF8 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wlna1 b.26.1.2 (A:8-114) Afadin {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1uhta_ b.26.1.2 (A:) FHA domain containing protein At4G14490 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1g6ga_ b.26.1.2 (A:) Phosphotyrosine binding domain of Rad53 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1dmza_ b.26.1.2 (A:) Phosphotyrosine binding domain of Rad53 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1mzka_ b.26.1.2 (A:) Kinase associated protein phosphatase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2g1la1 b.26.1.2 (A:498-599) Kinesin-like protein kif1c {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure