Citrus Sinensis ID: 011238

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490
MDESWRMRMGLGMQARKSMPEETPATATRHSFTSTALDPDDFSDVFGGPPRTLLARKFSADFSTTTSSSSSSNFYSEVFRIPSPEFVFPTRRAGRVLPAFRIPASRGEGFYSDVFASGDGRKSRERSQPKSKSNSSSVLSSEELSPLRPPDGEDVALSSFTSKLRPINVPCRWNSTTMMPDDHPNRQGMPMPAFQCSRPSYNDDHHLKEDDANYNNFIRSSHYGFSRRVSSPETISVEPTSFRSIKVSVDDLELNSPSSPASSLCQEPEPKTSFMQSGNAMQEQEVEQEEDEVMSSYVIEINSDYREGTGEAVSIDEAIAWAKEKFQSQSSFTLAQQEKHELAADNEERPNANEFLDPQTAGHETLDSPMEEKTNPTTEEGKEQSQDDIETELLDEEIRLWSAGKETNIRLLLSALHHVLWPNSGWCSVPLTSLIESSHVKKAYQKARLCLHPDKLQQRGATAQQKYVAEKVFSVLQDAWSAFISEDVFF
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHcccccHHHHHHHHcccccccccccccccccccccccccccccccccccccHHHHHHHcHHHHHHHHHHHHHHHHHHccHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHcccccHHcccccHHHHHHHHHHHHHHHHHHHHHHHHcccc
ccccccccccccccccccccccccccccccccccccccHHHHHHHccccccHHHHEccccccccccccccccccHHHHccccccccccccccccccccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccEcccccccEEccccccccccccccccccccccccccccccccccccHccccHHHccccccHHHcccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccHHHHHHHHccccHHHHHHHHHHHHHccccHHHHHHHHHHccHHHHHHHHHHHHHHHccccccccccHHHcccHHHHHHHHHHHHEEEccHHHcccccccHHHHHHHHHHHHHHHHHHHHccccccc
MDESWRmrmglgmqarksmpeetpatatrhsftstaldpddfsdvfggpprtLLARKFsadfstttssssssnfysevfripspefvfptrragrvlpafripasrgegfysdvfasgdgrksrersqpksksnsssvlsseelsplrppdgedvalssftsklrpinvpcrwnsttmmpddhpnrqgmpmpafqcsrpsynddhhlkeddanynnfirsshygfsrrvsspetisveptsfrsikvsvddlelnspsspasslcqepepktsfmqsgnamqeQEVEQEEDEVMSSYVIEINsdyregtgeaVSIDEAIAWAKEKFQSQSSFTLAQQEKHELaadneerpnanefldpqtaghetldspmeektnptteegkeqsqDDIETELLDEEIRLWSAGKETNIRLLLSALHHvlwpnsgwcsvpltsliesSHVKKAYQKARlclhpdklqqrGATAQQKYVAEKVFSVLQDAWSAfisedvff
MDESWRMRMGLgmqarksmpeetPATATRHSFTSTALDPDDFSDVFGGPPRTLLARKFSADfstttssssssnfyseVFRIPSPEFVFPTRRAGRVLPAfripasrgegfysdvfasgdgrksrersqpksksnsssvlsseelsplrppdGEDVALSsftsklrpinvpcrwnsTTMMPDDHPNRQGMPMPAFQCSRPSYNDDHHLKEDDANYNNFIRSSHYgfsrrvsspetisveptsfrsIKVSVDDLELNSPsspasslcqepEPKTSFMQSGNAMQEQEVEQEEDEVMSSYVIEINSDYREGTGEAVSIDEAIAWAKEKFQSQSSFTLAQQEKHELaadneerpnaNEFLDPQTAghetldspmeektnptteegkeqsqddIETELLDEEIRLWSAGKETNIRLLLSALHHVLWPNSGWCSVPLTSLIESSHVKKAYQKARLCLHPDKLQQRGATAQQKYVAEKVFSVLQDAWSAFISEDVFF
MDESWRMRMGLGMQARKSMPEETPATATRHSFTSTALDPDDFSDVFGGPPRTLLARKFSADFstttssssssNFYSEVFRIPSPEFVFPTRRAGRVLPAFRIPASRGEGFYSDVFASGDGRKSRersqpksksnsssvlsseelsplrppDGEDVALSSFTSKLRPINVPCRWNSTTMMPDDHPNRQGMPMPAFQCSRPSYNDDHHLKEDDANYNNFIRSSHYGFSRRVSSPETISVEPTSFRSIKVSVDDLELNSPSSPASSLCQEPEPKTSFMQSGNAMqeqeveqeedevMSSYVIEINSDYREGTGEAVSIDEAIAWAKEKFQSQSSFTLAQQEKHELAADNEERPNANEFLDPQTAGHETLDSPMEEKTNPTTEEGKEQSQddietelldeeiRLWSAGKETNIRLLLSALHHVLWPNSGWCSVPLTSLIESSHVKKAYQKARLCLHPDKLQQRGATAQQKYVAEKVFSVLQDAWSAFISEDVFF
*************************************************************************FYSEVFRIPSPEFVFPTRRAGRVLPAFRIPASRGEGFYSDVF***************************************************INVPCRW*******************************************FI******************************************************************************YVIEINSDYREGTGEAVSIDEAIAWA**********************************************************************LLDEEIRLWSAGKETNIRLLLSALHHVLWPNSGWCSVPLTSLIESSHVKKAYQKARLCLHPDKLQQRGATAQQKYVAEKVFSVLQDAWSAFISEDV**
***SWR***********************************FSDVFGGPP**********************************************************************************************************************************************************************************************************************************************************************************************************************************************************EIRLWSAGKETNIRLLLSALHHVLWPNSGWCSVPLTSLIESSHVKKAYQKARLCLHPDKLQ****TAQQKYVAEKVFSVLQDAWSAFISEDVFF
********MGLGM****************HSFTSTALDPDDFSDVFGGPPRTLLARKFSA*************FYSEVFRIPSPEFVFPTRRAGRVLPAFRIPASRGEGFYSDVFAS**********************************GEDVALSSFTSKLRPINVPCRWNSTTMMPDDHPNRQGMPMPAFQCSRPSYNDDHHLKEDDANYNNFIRSSHYGFSRRVSSPETISVEPTSFRSIKVSVDD*****************************************VMSSYVIEINSDYREGTGEAVSIDEAIAWAKEKFQSQSSFTLAQQEKHELAADNEERPNANEFLDPQTAGHETL**********************IETELLDEEIRLWSAGKETNIRLLLSALHHVLWPNSGWCSVPLTSLIESSHVKKAYQKARLCLHPDKLQQRGATAQQKYVAEKVFSVLQDAWSAFISEDVFF
************************************LDPDDFSDVFGGPPRTLLARKF**************NFYSEVFRIPSPEFVFPTRRAGRVLPAFRIPASRGEGFY*DV************************************DGEDVALSSFTSKLRPINVPCRWNS****************P*F***RPSYNDDHHLKEDDANYNNFIRSSHYGFSRRVSSPETISVEPTSFRSIKVSVDDLELN****************************************S********************************************************NEFLDPQ**GHETLDSPMEEKTNPTTEEGKEQSQDDIETELLDEEIRLWSAGKETNIRLLLSALHHVLWPNSGWCSVPLTSLIESSHVKKAYQKARLCLHPDKLQQRGATAQQKYVAEKVFSVLQDAWSAFISE****
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MDESWRMRMGLGMQARKSMPEETPATATRHSFTSTALDPDDFSDVFGGPPRTLLARKFSADFSTTTSSSSSSNFYSEVFRIPSPEFVFPTRRAGRVLPAFRIPASRGEGFYSDVFASGDGRKSRERSQPKSKSNSSSVLSSEELSPLRPPDGEDVALSSFTSKLRPINVPCRWNSTTMMPDDHPNRQGMPMPAFQCSRPSYNDDHHLKEDDANYNNFIRSSHYGFSRRVSSPETISVEPTSFRSIKVSVDDLELNSPSSPASSLCQEPEPKTSFMQSGNAMQEQEVEQEEDEVMSSYVIEINSDYREGTGEAVSIDEAIAWAKEKFQSQSSFTLAQQEKHELAADNEERPNANEFLDPQTAGHETLDSPMEEKTNPTTEEGKEQSQDDIETELLDEEIRLWSAGKETNIRLLLSALHHVLWPNSGWCSVPLTSLIESSHVKKAYQKARLCLHPDKLQQRGATAQQKYVAEKVFSVLQDAWSAFISEDVFF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query490 2.2.26 [Sep-21-2011]
Q0WQ57891 Auxilin-related protein 2 no no 0.244 0.134 0.533 1e-32
Q9SU08904 Auxilin-related protein 1 no no 0.244 0.132 0.525 8e-32
O13773697 UBA domain-containing pro yes no 0.173 0.121 0.430 1e-13
Q27974910 Putative tyrosine-protein yes no 0.291 0.157 0.371 4e-13
O75061913 Putative tyrosine-protein yes no 0.214 0.115 0.415 5e-12
O149761311 Cyclin-G-associated kinas no no 0.302 0.112 0.341 6e-12
Q99KY41305 Cyclin-G-associated kinas yes no 0.175 0.065 0.45 7e-12
Q80TZ3938 Putative tyrosine-protein no no 0.193 0.101 0.396 1e-11
P978741305 Cyclin-G-associated kinas no no 0.3 0.112 0.348 1e-11
Q06677668 Auxilin-like clathrin unc yes no 0.212 0.155 0.351 1e-08
>sp|Q0WQ57|AUXI2_ARATH Auxilin-related protein 2 OS=Arabidopsis thaliana GN=At4g12770 PE=1 SV=1 Back     alignment and function desciption
 Score =  141 bits (355), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 64/120 (53%), Positives = 83/120 (69%)

Query: 370 MEEKTNPTTEEGKEQSQDDIETELLDEEIRLWSAGKETNIRLLLSALHHVLWPNSGWCSV 429
           + EK     +  +EQ++ D     LD EIR W AGKE N+R LLS L +VLWP  GW  V
Sbjct: 772 LAEKNERDLQVQREQAEKDRIGGTLDVEIRRWGAGKEGNLRALLSTLQYVLWPECGWQPV 831

Query: 430 PLTSLIESSHVKKAYQKARLCLHPDKLQQRGATAQQKYVAEKVFSVLQDAWSAFISEDVF 489
            LT LI  + VKK Y+KA LC+HPDK+QQ+GA  QQKY+AEKVF +L++AW+ F SE++F
Sbjct: 832 SLTDLITGASVKKVYRKATLCIHPDKVQQKGANLQQKYIAEKVFDMLKEAWNKFNSEELF 891
Promotes probably uncoating of clathrin-coated vesicles.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9SU08|AUXI1_ARATH Auxilin-related protein 1 OS=Arabidopsis thaliana GN=At4g12780 PE=1 SV=2 Back     alignment and function description
>sp|O13773|UCP7_SCHPO UBA domain-containing protein 7 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ucp7 PE=4 SV=1 Back     alignment and function description
>sp|Q27974|AUXI_BOVIN Putative tyrosine-protein phosphatase auxilin OS=Bos taurus GN=DNAJC6 PE=1 SV=1 Back     alignment and function description
>sp|O75061|AUXI_HUMAN Putative tyrosine-protein phosphatase auxilin OS=Homo sapiens GN=DNAJC6 PE=1 SV=3 Back     alignment and function description
>sp|O14976|GAK_HUMAN Cyclin-G-associated kinase OS=Homo sapiens GN=GAK PE=1 SV=2 Back     alignment and function description
>sp|Q99KY4|GAK_MOUSE Cyclin-G-associated kinase OS=Mus musculus GN=Gak PE=1 SV=2 Back     alignment and function description
>sp|Q80TZ3|AUXI_MOUSE Putative tyrosine-protein phosphatase auxilin OS=Mus musculus GN=Dnajc6 PE=2 SV=2 Back     alignment and function description
>sp|P97874|GAK_RAT Cyclin-G-associated kinase OS=Rattus norvegicus GN=Gak PE=2 SV=1 Back     alignment and function description
>sp|Q06677|SWA2_YEAST Auxilin-like clathrin uncoating factor SWA2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SWA2 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query490
255584501482 conserved hypothetical protein [Ricinus 0.959 0.975 0.639 1e-150
225443944486 PREDICTED: uncharacterized protein LOC10 0.959 0.967 0.574 1e-143
147846789492 hypothetical protein VITISV_032618 [Viti 0.934 0.930 0.567 1e-136
356556527466 PREDICTED: uncharacterized protein LOC10 0.924 0.972 0.548 1e-129
356532956468 PREDICTED: uncharacterized protein LOC10 0.908 0.950 0.534 1e-125
449434248475 PREDICTED: uncharacterized protein LOC10 0.948 0.978 0.536 1e-120
356510867465 PREDICTED: uncharacterized protein LOC10 0.912 0.961 0.529 1e-118
356528226464 PREDICTED: uncharacterized protein LOC10 0.855 0.903 0.554 1e-112
357450631461 Cyclin-G-associated kinase [Medicago tru 0.877 0.932 0.502 1e-111
356523511445 PREDICTED: uncharacterized protein LOC10 0.810 0.892 0.528 1e-108
>gi|255584501|ref|XP_002532979.1| conserved hypothetical protein [Ricinus communis] gi|223527243|gb|EEF29403.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score =  539 bits (1389), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 321/502 (63%), Positives = 382/502 (76%), Gaps = 32/502 (6%)

Query: 1   MDESWRMRMGLGMQARKSMPEETPATATRHSFTSTALDPDDFSDVFGGPPRTLLARKFSA 60
           MDESWRMRMG+    R+SM E+T + +T  S    ALDPDDFSDVFGGPPR++L+RKFS 
Sbjct: 1   MDESWRMRMGI--PRRRSM-EDTTSGSTHRSIE--ALDPDDFSDVFGGPPRSVLSRKFSG 55

Query: 61  DFSTTTSSSSSSNFYSEVFRIPSPEFVF------PTRRAGRVLPAFRIPASRGEGFYSDV 114
           DF++T SSS+S  FY EVFR   PEFV        +   GR LPAFRIPA + +GFY DV
Sbjct: 56  DFTSTRSSSTS--FYEEVFR--PPEFVSTVLDKKKSGAGGRSLPAFRIPA-KSDGFYGDV 110

Query: 115 FASGDGRKSRERSQPKSKSNSSSVLSS----EELSP-LRPPDGEDVALSSFTSKLRPINV 169
           F   +GR SRERS+P SK+ S S  SS    EELSP  RP  G+D ALSSF SKLRPINV
Sbjct: 111 FGWEEGRMSRERSRPSSKAKSKSNSSSVLSSEELSPHRRPVSGDDAALSSFASKLRPINV 170

Query: 170 PCRWNSTTMMPDDHPNRQGMPMPAFQCSRPSYNDDHHLKEDDANYNNFIRSSHYGFSRRV 229
           PCRWNS T+ P++   +Q   MP+F C+ PSY D+++++ +   YN+  RSS+   SR+V
Sbjct: 171 PCRWNSNTLRPEEFTRKQ--EMPSFPCNSPSYADNYYMENE---YNDNFRSSYIKVSRQV 225

Query: 230 SSPETISVEPTSFRSIKVSVDDLELNSPSSPASSLCQEPEPKTSFMQSGNAMQEQEVEQE 289
           SSPETIS++P+SFRSIKVSVDD+ELNSPSSP SSLCQEPE   S     ++MQE+E+EQ+
Sbjct: 226 SSPETISIKPSSFRSIKVSVDDIELNSPSSPVSSLCQEPE--ASIGIQCDSMQEEEMEQD 283

Query: 290 EDEVMSSYVIEINSDYREGTGEAVSIDEAIAWAKEKFQSQSSFTLAQQEKHELAADNEER 349
           EDEVMSSYVIEINSD+RE   EA+SIDEAIAWAKEKFQSQS     +Q+K + + + EE 
Sbjct: 284 EDEVMSSYVIEINSDHREVASEAISIDEAIAWAKEKFQSQS---FDRQQKKDHSNELEET 340

Query: 350 PNANEFLDPQTAGHETLDSPMEEK-TNPTTEEGKEQSQDDIETELLDEEIRLWSAGKETN 408
           PN+NEFL+ Q  GH    SP EE+  N  +E   EQS+ D+  ELLDE+IRLWSAGKETN
Sbjct: 341 PNSNEFLEQQMDGHGRTQSPTEEELKNLRSEAETEQSEKDMGMELLDEDIRLWSAGKETN 400

Query: 409 IRLLLSALHHVLWPNSGWCSVPLTSLIESSHVKKAYQKARLCLHPDKLQQRGATAQQKYV 468
           IRLLLS LHH+LWPNSGW S+PLTSLIESSHVKKAYQKARLCLHPDKLQQRGAT  QKYV
Sbjct: 401 IRLLLSTLHHILWPNSGWFSIPLTSLIESSHVKKAYQKARLCLHPDKLQQRGATHPQKYV 460

Query: 469 AEKVFSVLQDAWSAFISEDVFF 490
           AEK FS+LQDAW+AFIS+DVFF
Sbjct: 461 AEKAFSILQDAWAAFISQDVFF 482

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225443944|ref|XP_002272106.1| PREDICTED: uncharacterized protein LOC100249766 [Vitis vinifera] gi|297740762|emb|CBI30944.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|147846789|emb|CAN80626.1| hypothetical protein VITISV_032618 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356556527|ref|XP_003546576.1| PREDICTED: uncharacterized protein LOC100801416 [Glycine max] Back     alignment and taxonomy information
>gi|356532956|ref|XP_003535035.1| PREDICTED: uncharacterized protein LOC100813550 [Glycine max] Back     alignment and taxonomy information
>gi|449434248|ref|XP_004134908.1| PREDICTED: uncharacterized protein LOC101213807 [Cucumis sativus] gi|449490704|ref|XP_004158682.1| PREDICTED: uncharacterized protein LOC101230929 [Cucumis sativus] Back     alignment and taxonomy information
>gi|356510867|ref|XP_003524155.1| PREDICTED: uncharacterized protein LOC100820544 [Glycine max] Back     alignment and taxonomy information
>gi|356528226|ref|XP_003532706.1| PREDICTED: uncharacterized protein LOC100804267 [Glycine max] Back     alignment and taxonomy information
>gi|357450631|ref|XP_003595592.1| Cyclin-G-associated kinase [Medicago truncatula] gi|355484640|gb|AES65843.1| Cyclin-G-associated kinase [Medicago truncatula] Back     alignment and taxonomy information
>gi|356523511|ref|XP_003530381.1| PREDICTED: uncharacterized protein LOC100797148 [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query490
TAIR|locus:2009817455 AT1G30280 [Arabidopsis thalian 0.671 0.723 0.344 1.6e-71
TAIR|locus:2135778904 AT4G12780 [Arabidopsis thalian 0.3 0.162 0.429 7.5e-32
TAIR|locus:21152451422 AT4G36520 [Arabidopsis thalian 0.338 0.116 0.396 1.1e-30
TAIR|locus:2135763891 AT4G12770 [Arabidopsis thalian 0.3 0.164 0.436 2.8e-30
TAIR|locus:2036967523 AT1G21660 [Arabidopsis thalian 0.297 0.279 0.425 5.8e-27
TAIR|locus:2037256651 JAC1 "J-domain protein require 0.326 0.245 0.401 9.3e-25
TAIR|locus:20184621448 AUL1 "AT1G75310" [Arabidopsis 0.240 0.081 0.449 6.1e-22
DICTYBASE|DDB_G0276447730 DDB_G0276447 "BAR domain-conta 0.273 0.183 0.301 1.3e-11
POMBASE|SPAC17A5.12697 ucp7 "UBA/TPR/DNAJ domain prot 0.167 0.117 0.433 3.4e-11
UNIPROTKB|F1MIB21268 GAK "Uncharacterized protein" 0.306 0.118 0.339 1e-10
TAIR|locus:2009817 AT1G30280 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 412 (150.1 bits), Expect = 1.6e-71, Sum P(2) = 1.6e-71
 Identities = 136/395 (34%), Positives = 193/395 (48%)

Query:     1 MDESWRMRMGLGMQARKSMPEETPATATRHSFTSTALDPDDFSDVFGGPPRTLLARKFSA 60
             MDESWRM+MGL +    S+         R S  +  +D +DF+DVFGGPPR++L RKFS 
Sbjct:     1 MDESWRMKMGLSVDPFFSI--------ARKSMDAR-IDAEDFADVFGGPPRSVLTRKFSG 51

Query:    61 DFXXXXXXXXXXNFYSEVFRIP----SPEFVFPTRRAGRVLPAFRIPASRGEGFYSDVF- 115
             DF           FY E+F+ P    S   +  ++  GR LPAFRIP S GEGFY  VF 
Sbjct:    52 DFSRSDC------FYDEIFQPPGTFSSGGSLASSKSHGRNLPAFRIP-SGGEGFYDGVFG 104

Query:   116 ----ASGDGRKSRXXXXXXXXXXXXXXXXXXXXXXX---XXXDGEDVALSSFTSKLRPIN 168
                 ++ +G K +                              G+D   SSFTS+LRP+N
Sbjct:   105 GRGGSAKEGSKKQSSMTKPRSNSSSMLSSEEASPHYPPPAAASGDDSGFSSFTSRLRPLN 164

Query:   169 VPCRWNSTTMMPDDHPNRQGMPMPAFQCSRPSYNDDHHLKEDDANYNNFIRSSHYGFSRR 228
             VP R +           +Q     A   ++ S++  ++  E  A++  + + +H+G SRR
Sbjct:   165 VPSRSHKR------ESKKQSFS--AVPKAKDSFSGQNNTPEK-ADF--YYKKTHFGGSRR 213

Query:   229 VSSPETISVEPTSFRSIKVSVDDLELNSP-SSPASS-LCQEPEPKTSFMQSGNA------ 280
              +SPETIS++P SFR +    DD   +SP SSP SS +C+E +  T   Q  N       
Sbjct:   214 -ASPETISLDPNSFRRM----DDYGPSSPASSPVSSFICEEEDDNTHAKQRTNRDCKVEE 268

Query:   281 MXXXXXXXXXXXXMSSYVIEINSD----YRE------GTGEAVSIDEAIAWAKEKFQSQS 330
             +            MSSYVIEINSD    YRE      G  ++  +DEAIAWAKE+ Q   
Sbjct:   269 VVVEDEEDEEEEEMSSYVIEINSDRFDRYREEGGGGGGNSDSNDMDEAIAWAKERSQRPE 328

Query:   331 SFTLAQQEKHEL-AADNEERPNANEFLDPQTAGHE 364
             +    Q E+  + +  +EE P + E ++ +    E
Sbjct:   329 A---KQTEEDVIDSRRSEEEPKSEEEMEMEMKDEE 360
GO:0005737 "cytoplasm" evidence=ISM
GO:0031072 "heat shock protein binding" evidence=IEA
TAIR|locus:2135778 AT4G12780 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2115245 AT4G36520 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2135763 AT4G12770 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2036967 AT1G21660 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2037256 JAC1 "J-domain protein required for chloroplast accumulation response 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2018462 AUL1 "AT1G75310" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0276447 DDB_G0276447 "BAR domain-containing protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
POMBASE|SPAC17A5.12 ucp7 "UBA/TPR/DNAJ domain protein Ucp7" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
UNIPROTKB|F1MIB2 GAK "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00028345001
SubName- Full=Chromosome chr10 scaffold_43, whole genome shotgun sequence; (482 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query490
cd0625755 cd06257, DnaJ, DnaJ domain or J-domain 0.004
>gnl|CDD|99751 cd06257, DnaJ, DnaJ domain or J-domain Back     alignment and domain information 
 Score = 35.2 bits (82), Expect = 0.004
 Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 7/42 (16%)

Query: 440 VKKAYQKARLCLHPDKLQQRGATAQQKYVAEKVFSVLQDAWS 481
           +KKAY+K  L  HPDK             AE+ F  + +A+ 
Sbjct: 17  IKKAYRKLALKYHPDKNPDDPE-------AEEKFKEINEAYE 51

DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification. Length = 55

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 490
KOG0431453 consensus Auxilin-like protein and related protein 100.0
COG0484 371 DnaJ DnaJ-class molecular chaperone with C-termina 99.18
PRK09430267 djlA Dna-J like membrane chaperone protein; Provis 99.12
KOG0713 336 consensus Molecular chaperone (DnaJ superfamily) [ 99.09
smart0027160 DnaJ DnaJ molecular chaperone homology domain. 99.08
cd0625755 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat sho 99.07
PRK14288 369 chaperone protein DnaJ; Provisional 99.0
PF0022664 DnaJ: DnaJ domain; InterPro: IPR001623 The prokary 98.97
PRK14296 372 chaperone protein DnaJ; Provisional 98.91
KOG0712 337 consensus Molecular chaperone (DnaJ superfamily) [ 98.88
PRK14279 392 chaperone protein DnaJ; Provisional 98.87
PRK14285 365 chaperone protein DnaJ; Provisional 98.85
PRK14299 291 chaperone protein DnaJ; Provisional 98.82
PRK14286 372 chaperone protein DnaJ; Provisional 98.82
KOG0718 546 consensus Molecular chaperone (DnaJ superfamily) [ 98.81
PRK14295 389 chaperone protein DnaJ; Provisional 98.8
PRK14282 369 chaperone protein DnaJ; Provisional 98.8
PRK14278 378 chaperone protein DnaJ; Provisional 98.79
PRK14287 371 chaperone protein DnaJ; Provisional 98.78
PRK14277 386 chaperone protein DnaJ; Provisional 98.78
PRK14283 378 chaperone protein DnaJ; Provisional 98.78
PTZ00037 421 DnaJ_C chaperone protein; Provisional 98.77
PRK10266 306 curved DNA-binding protein CbpA; Provisional 98.77
PRK14294 366 chaperone protein DnaJ; Provisional 98.77
PRK10767 371 chaperone protein DnaJ; Provisional 98.76
PRK14284 391 chaperone protein DnaJ; Provisional 98.76
PRK14276 380 chaperone protein DnaJ; Provisional 98.76
PRK14280 376 chaperone protein DnaJ; Provisional 98.74
PRK14297 380 chaperone protein DnaJ; Provisional 98.74
PRK14291 382 chaperone protein DnaJ; Provisional 98.74
PRK14281 397 chaperone protein DnaJ; Provisional 98.74
PRK14301 373 chaperone protein DnaJ; Provisional 98.73
PRK14298 377 chaperone protein DnaJ; Provisional 98.73
PRK14290 365 chaperone protein DnaJ; Provisional 98.7
PRK14300 372 chaperone protein DnaJ; Provisional 98.68
KOG0717 508 consensus Molecular chaperone (DnaJ superfamily) [ 98.67
KOG0691 296 consensus Molecular chaperone (DnaJ superfamily) [ 98.64
PRK14293 374 chaperone protein DnaJ; Provisional 98.62
PRK14292 371 chaperone protein DnaJ; Provisional 98.62
COG2214 237 CbpA DnaJ-class molecular chaperone [Posttranslati 98.62
KOG0719 264 consensus Molecular chaperone (DnaJ superfamily) [ 98.61
PRK14289 386 chaperone protein DnaJ; Provisional 98.57
KOG0716 279 consensus Molecular chaperone (DnaJ superfamily) [ 98.56
KOG0715 288 consensus Molecular chaperone (DnaJ superfamily) [ 98.51
PHA03102153 Small T antigen; Reviewed 98.51
PRK05014 171 hscB co-chaperone HscB; Provisional 98.47
PTZ00100116 DnaJ chaperone protein; Provisional 98.47
PTZ00341 1136 Ring-infected erythrocyte surface antigen; Provisi 98.37
KOG0721230 consensus Molecular chaperone (DnaJ superfamily) [ 98.36
PRK03578 176 hscB co-chaperone HscB; Provisional 98.33
PRK00294 173 hscB co-chaperone HscB; Provisional 98.29
PRK01356166 hscB co-chaperone HscB; Provisional 98.28
KOG0720 490 consensus Molecular chaperone (DnaJ superfamily) [ 98.28
TIGR03835 871 termin_org_DnaJ terminal organelle assembly protei 98.11
TIGR00714 157 hscB Fe-S protein assembly co-chaperone HscB. This 98.1
KOG0550486 consensus Molecular chaperone (DnaJ superfamily) [ 98.06
COG5407 610 SEC63 Preprotein translocase subunit Sec63 [Intrac 98.04
PHA02624 647 large T antigen; Provisional 98.0
KOG0714 306 consensus Molecular chaperone (DnaJ superfamily) [ 97.98
KOG1150 250 consensus Predicted molecular chaperone (DnaJ supe 97.94
KOG0722 329 consensus Molecular chaperone (DnaJ superfamily) [ 97.83
KOG0624504 consensus dsRNA-activated protein kinase inhibitor 97.78
TIGR02349 354 DnaJ_bact chaperone protein DnaJ. This model repre 97.68
PRK01773 173 hscB co-chaperone HscB; Provisional 97.49
KOG1789 2235 consensus Endocytosis protein RME-8, contains DnaJ 97.15
COG1076174 DjlA DnaJ-domain-containing proteins 1 [Posttransl 97.12
KOG0723112 consensus Molecular chaperone (DnaJ superfamily) [ 96.6
COG5269 379 ZUO1 Ribosome-associated chaperone zuotin [Transla 95.73
KOG0568 342 consensus Molecular chaperone (DnaJ superfamily) [ 88.51
PF14687112 DUF4460: Domain of unknown function (DUF4460) 81.26
>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only] Back     alignment and domain information 
Probab=100.00  E-value=1.6e-41  Score=349.77  Aligned_cols=425  Identities=26%  Similarity=0.317  Sum_probs=259.6

Q ss_pred             CccccccccCcccccccCCCCCCCccccccccccccCCCCCcccccCCCCchhhhhhccCCccccccCCCCCCccccccc
Q 011238            1 MDESWRMRMGLGMQARKSMPEETPATATRHSFTSTALDPDDFSDVFGGPPRTLLARKFSADFSTTTSSSSSSNFYSEVFR   80 (490)
Q Consensus         1 mdeswr~~mg~~~pr~rs~~~~~~~~~~~~~~~~~~l~pddf~dvfggpprs~l~~~fs~~~~~~~~~~~s~~fy~e~f~   80 (490)
                      +|..|+|.+|.       . ++....-++ +.++-.....++.++++..+...+.+.+.++-..   .+.+...+.+.. 
T Consensus         1 ~~~~~~~~~~~-------~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-   67 (453)
T KOG0431|consen    1 ADAKFRFAKGR-------S-EDESFSITR-SEMDDSTKNSDSREREGRSPQVELTRERAENEAE---FSFVQAKLLEER-   67 (453)
T ss_pred             CCccccccccc-------c-ccceeeccc-cccCcccccccccccccccccccccccccccccc---cccccccccccc-
Confidence            57788888882       2 222222222 3335677888999999999999999999874331   123345555666 


Q ss_pred             CCCCCccc------cCCCCCCccceeeecCCCCCCcccccccCCC-Cc---ccccccCCCCCCCCCcccccCcCCCCC--
Q 011238           81 IPSPEFVF------PTRRAGRVLPAFRIPASRGEGFYSDVFASGD-GR---KSRERSQPKSKSNSSSVLSSEELSPLR--  148 (490)
Q Consensus        81 ~~~~~~~~------~~~~~gr~lp~frip~~~~~gfy~difg~~~-~~---rsr~rs~~~sksnsss~~ssee~sp~r--  148 (490)
                      +  ++...      ....++.++++.+.|+. ...++..+|+... .+   -.+..+......++++-+..++...+.  
T Consensus        68 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~s~~~~~~~~~~~~~~~  144 (453)
T KOG0431|consen   68 P--PGQKGSGRSKNDLKSEDESERAKREKSG-TDATEGHAFVGNGADGKATVKRQDPETSAEQRSSSSLDHEAAAGHDST  144 (453)
T ss_pred             C--cccCcccccccccccccccccccccCCC-cccccCccccccccccccCCCccCcccccccCCcccccccccccCccc
Confidence            5  33333      22255566899999998 8888998888642 22   223344455556666666666666653  


Q ss_pred             --CCCCCcchhhhccccccccccccccCCCCCCCCCCCCcCCCCCCCcccCCCCCcccccccccccccccccccccccce
Q 011238          149 --PPDGEDVALSSFTSKLRPINVPCRWNSTTMMPDDHPNRQGMPMPAFQCSRPSYNDDHHLKEDDANYNNFIRSSHYGFS  226 (490)
Q Consensus       149 --p~~g~d~alssf~sklrpi~vp~r~~ss~~~p~~~~~~~~~~~~~f~c~~~~~~~~~~~~~~~~~~~~~~~s~h~g~s  226 (490)
                        |...+.-.++++..+..+..+.....-.+.-... ...++.  ....-+-+.     ...+   ..+..+...|.+- 
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~s~~~-----~~~~---~~~s~~~~~~~~~-  212 (453)
T KOG0431|consen  145 EEAAAADEKPRSSAEVREKEDKVSNTSSAVERAKPS-AKARGF--AQALGSQQQ-----ATAP---KADSFFNSTSRGA-  212 (453)
T ss_pred             cccccccccccccccccccccccccccccccccCcc-cccccc--ccccccccc-----CCCc---cccccccccccCC-
Confidence              2356666667777777776666555211111110 000000  110000000     0011   1223445555554 


Q ss_pred             eecCCCcccccCCCcceeeeeecccccccCCCCcCcC-ccCCCC---CCCccc-ccccchhhh---hhhccccchhceee
Q 011238          227 RRVSSPETISVEPTSFRSIKVSVDDLELNSPSSPASS-LCQEPE---PKTSFM-QSGNAMQEQ---EVEQEEDEVMSSYV  298 (490)
Q Consensus       227 ~~~s~petis~~~~s~~~~k~s~~d~~~~~pss~~ss-~~~~p~---~k~~~~-~~~~~~~e~---~~~~~~devmssyv  298 (490)
                      .+...|++......+.....-.   +......+.++. -|.+.+   .++..+ ....-..++   .-.....+.|.++.
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~s~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (453)
T KOG0431|consen  213 SAPADPFADLDDLSSGSNASKS---GSSSDLSSRVSPGITETTDSPPSKTSSPPNQQKKSPPDFQAKPSSESPEASTQKR  289 (453)
T ss_pred             CCCCCccccccchhhhcccCCC---CCcccccCCCCCCCCCCCCCchhhhcccccchhccchhhhcccCccchhhccccc
Confidence            5556677777766655554221   111111333333 233321   111111 101111111   11123347777777


Q ss_pred             EEecCCc---cCCCccchhHHHHHHHHHHhhhccchhhhhhhhhhhhcccccC-CCCc--cccccccccCCccccCcccc
Q 011238          299 IEINSDY---REGTGEAVSIDEAIAWAKEKFQSQSSFTLAQQEKHELAADNEE-RPNA--NEFLDPQTAGHETLDSPMEE  372 (490)
Q Consensus       299 ieins~~---re~~~~a~~~deaiawakekf~s~~~~~~r~~~~~~~~~~~~~-~p~~--~ef~d~lld~hg~tqs~~~~  372 (490)
                      +.++...   |-+....          .++++                  +.. +..+  +.|.+ ++...++..+...+
T Consensus       290 ~~~~~~~~~~~~~~~~~----------g~~~~------------------~~~~~~~~~~~~~~~-~~~~~~~~~~~d~k  340 (453)
T KOG0431|consen  290 PNYAQKRSDVPPGNTER----------GKRAE------------------SSSTRTKKQMDTFSD-LLNPQGFKSTSDEK  340 (453)
T ss_pred             cchhccCCCCCcccccc----------ccccc------------------ccccccchhhhhhhh-hhccccccchhhhh
Confidence            7764432   2221100          11111                  112 3333  35777 77777887777665


Q ss_pred             CCCCChhhhhhcchhhhhhhHHHHHHHhhhcCCCccHHHHHHhcccccCCCCCCcccCCCCCCChhHHHHHHHHHHHhcC
Q 011238          373 KTNPTTEEGKEQSQDDIETELLDEEIRLWSAGKETNIRLLLSALHHVLWPNSGWCSVPLTSLIESSHVKKAYQKARLCLH  452 (490)
Q Consensus       373 ~~~~~~~~~kEq~eK~~l~D~Vd~KI~~Wa~GKe~NIRALLSSLh~VLW~es~WK~VGmsdLaTp~qVKKAYRKAiLkvH  452 (490)
                      .+.+.+++++   |..++.|.|+.+|+.|+.|||+||||||+|||+|||++|+|++|+|.+|||+++|||+||||||+||
T Consensus       341 ~~~~~ae~~~---e~~r~~e~~d~~I~~W~~GKE~NIRALLSTLh~VLW~es~WqpVsltDLVtp~~VKKaYrKA~L~VH  417 (453)
T KOG0431|consen  341 RPREIAEMRK---ELSRLMEPLDEEIRRWSEGKEGNIRALLSTLHYVLWPESGWQPVSLTDLVTPAQVKKAYRKAVLCVH  417 (453)
T ss_pred             hHHHHHHHHH---HHHhhcchHHHHHHHhcccccccHHHHHHHHhHhhcCccCcccCchhhccCHHHHHHHHHhhhheeC
Confidence            5555555544   5578999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcccCCCCCHHHHHHHHHHHHHHHHHHHHHhhccC
Q 011238          453 PDKLQQRGATAQQKYVAEKVFSVLQDAWSAFISEDV  488 (490)
Q Consensus       453 PDKL~q~Ga~~EQK~IAE~VF~eLNEAYE~Fkdqe~  488 (490)
                      |||++++|++.+|||||+.||.+|++||+.|..+++
T Consensus       418 PDKlqq~gas~~qK~Iaekvfd~l~eawn~f~~~~~  453 (453)
T KOG0431|consen  418 PDKLQQKGASLEQKYIAEKVFDALSEAWNKFNQQED  453 (453)
T ss_pred             cccccCCcccHHHHHHHHHHHHHHHHHHHhhhccCC
Confidence            999999999999999999999999999999998874

>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional Back     alignment and domain information
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>smart00271 DnaJ DnaJ molecular chaperone homology domain Back     alignment and domain information
>cd06257 DnaJ DnaJ domain or J-domain Back     alignment and domain information
>PRK14288 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein [] Back     alignment and domain information
>PRK14296 chaperone protein DnaJ; Provisional Back     alignment and domain information
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK14279 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14285 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14299 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14286 chaperone protein DnaJ; Provisional Back     alignment and domain information
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK14295 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14282 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14278 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14287 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14277 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14283 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PTZ00037 DnaJ_C chaperone protein; Provisional Back     alignment and domain information
>PRK10266 curved DNA-binding protein CbpA; Provisional Back     alignment and domain information
>PRK14294 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK10767 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14284 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14276 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14280 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14297 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14291 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14281 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14301 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14298 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14290 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14300 chaperone protein DnaJ; Provisional Back     alignment and domain information
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK14293 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14292 chaperone protein DnaJ; Provisional Back     alignment and domain information
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK14289 chaperone protein DnaJ; Provisional Back     alignment and domain information
>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PHA03102 Small T antigen; Reviewed Back     alignment and domain information
>PRK05014 hscB co-chaperone HscB; Provisional Back     alignment and domain information
>PTZ00100 DnaJ chaperone protein; Provisional Back     alignment and domain information
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional Back     alignment and domain information
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK03578 hscB co-chaperone HscB; Provisional Back     alignment and domain information
>PRK00294 hscB co-chaperone HscB; Provisional Back     alignment and domain information
>PRK01356 hscB co-chaperone HscB; Provisional Back     alignment and domain information
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ Back     alignment and domain information
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB Back     alignment and domain information
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion] Back     alignment and domain information
>PHA02624 large T antigen; Provisional Back     alignment and domain information
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] Back     alignment and domain information
>TIGR02349 DnaJ_bact chaperone protein DnaJ Back     alignment and domain information
>PRK01773 hscB co-chaperone HscB; Provisional Back     alignment and domain information
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF14687 DUF4460: Domain of unknown function (DUF4460) Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query490
3ag7_A106 An Auxilin-Like J-Domain Containing Protein, Jac1 J 1e-25
1n4c_A182 Nmr Structure Of The J-Domain And Clathrin Substrat 2e-12
1xi5_J114 Clathrin D6 Coat With Auxilin J-Domain Length = 114 7e-11
2qwn_B94 Crystal Structure Of Disulfide-Bond-Crosslinked Com 2e-10
1nz6_A101 Crystal Structure Of Auxilin J-Domain Length = 101 2e-10
2qwo_B92 Crystal Structure Of Disulfide-Bond-Crosslinked Com 2e-10
>pdb|3AG7|A Chain A, An Auxilin-Like J-Domain Containing Protein, Jac1 J-Domain Length = 106 Back     alignment and structure 
Iteration: 1

 Score =  114 bits (285), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 52/85 (61%), Positives = 65/85 (76%)
Query: 399 RLWSAGKETNIRLLLSALHHVLWPNSGWCSVPLTSLIESSHVKKAYQKARLCLHPDKLQQ 458
           R WS+GK  NIR LLS L ++LW  SGW  VPL  +IE + V+K+YQ+A L LHPDKLQQ
Sbjct: 16  RKWSSGKSGNIRSLLSTLQYILWSGSGWKPVPLMDMIEGNAVRKSYQRALLILHPDKLQQ 75
Query: 459 RGATAQQKYVAEKVFSVLQDAWSAF 483
           +GA+A QKY+AEKVF +LQ+AW  F
Sbjct: 76  KGASANQKYMAEKVFELLQEAWDHF 100
>pdb|1N4C|A Chain A, Nmr Structure Of The J-Domain And Clathrin Substrate Binding Domain Of Bovine Auxilin Length = 182 Back     alignment and structure
>pdb|1XI5|J Chain J, Clathrin D6 Coat With Auxilin J-Domain Length = 114 Back     alignment and structure
>pdb|2QWN|B Chain B, Crystal Structure Of Disulfide-Bond-Crosslinked Complex Of Bovine Hsc70 (1-386aa)r171c And Bovine Auxilin (810-910aa)d876c In The AdpPi State Length = 94 Back     alignment and structure
>pdb|1NZ6|A Chain A, Crystal Structure Of Auxilin J-Domain Length = 101 Back     alignment and structure
>pdb|2QWO|B Chain B, Crystal Structure Of Disulfide-Bond-Crosslinked Complex Of Bovine Hsc70 (1-394aa)r171c And Bovine Auxilin (810-910aa)d876c In The AdpPi Form #1 Length = 92 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query490
3ag7_A106 Putative uncharacterized protein F9E10.5; J-domain 4e-37
2qwo_B92 Putative tyrosine-protein phosphatase auxilin; cha 3e-30
1n4c_A182 Auxilin; four helix bundle, protein binding; NMR { 4e-27
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-07
>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana} Length = 106 Back     alignment and structure
 Score =  131 bits (330), Expect = 4e-37
 Identities = 55/97 (56%), Positives = 72/97 (74%)

Query: 390 ETELLDEEIRLWSAGKETNIRLLLSALHHVLWPNSGWCSVPLTSLIESSHVKKAYQKARL 449
           E + +D +IR WS+GK  NIR LLS L ++LW  SGW  VPL  +IE + V+K+YQ+A L
Sbjct: 7   EIKNIDAKIRKWSSGKSGNIRSLLSTLQYILWSGSGWKPVPLMDMIEGNAVRKSYQRALL 66

Query: 450 CLHPDKLQQRGATAQQKYVAEKVFSVLQDAWSAFISE 486
            LHPDKLQQ+GA+A QKY+AEKVF +LQ+AW  F + 
Sbjct: 67  ILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNTL 103
>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A Length = 92 Back     alignment and structure
>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J Length = 182 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query490
1n4c_A182 Auxilin; four helix bundle, protein binding; NMR { 99.95
2qwo_B92 Putative tyrosine-protein phosphatase auxilin; cha 99.95
3ag7_A106 Putative uncharacterized protein F9E10.5; J-domain 99.93
1wjz_A94 1700030A21RIK protein; J-domain, DNAJ like protein 99.22
2ys8_A90 RAB-related GTP-binding protein RABJ; DNAJ domain, 99.21
1iur_A88 KIAA0730 protein; DNAJ like domain, riken structur 99.12
2ej7_A82 HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, nati 99.09
2dn9_A79 DNAJ homolog subfamily A member 3; J-domain, TID1, 99.07
2dmx_A92 DNAJ homolog subfamily B member 8; DNAJ J domain, 99.06
2cug_A88 Mkiaa0962 protein; DNAJ-like domain, structural ge 99.05
2ctr_A88 DNAJ homolog subfamily B member 9; J-domain, chape 99.05
1hdj_A77 Human HSP40, HDJ-1; molecular chaperone; NMR {Homo 99.05
2yua_A99 Williams-beuren syndrome chromosome region 18 prot 99.04
2qsa_A109 DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, s 99.03
2ctp_A78 DNAJ homolog subfamily B member 12; J-domain, chap 99.02
2l6l_A155 DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, 98.99
2ctq_A112 DNAJ homolog subfamily C member 12; J-domain, chap 98.99
2ctw_A109 DNAJ homolog subfamily C member 5; J-domain, chape 98.98
2lgw_A99 DNAJ homolog subfamily B member 2; J domain, HSJ1A 98.98
2guz_A71 Mitochondrial import inner membrane translocase su 98.96
1faf_A79 Large T antigen; J domain, HPD motif, anti-paralle 98.95
2och_A73 Hypothetical protein DNJ-12; HSP40, J-domain, chap 98.95
1bq0_A103 DNAJ, HSP40; chaperone, heat shock, protein foldin 98.94
2o37_A92 Protein SIS1; HSP40, J-domain, cochaperone, APC900 98.91
3bvo_A207 CO-chaperone protein HSCB, mitochondrial precurso; 98.9
1fpo_A 171 HSC20, chaperone protein HSCB; molecular chaperone 98.89
3hho_A 174 CO-chaperone protein HSCB homolog; structural geno 98.86
3apq_A 210 DNAJ homolog subfamily C member 10; thioredoxin fo 98.81
1gh6_A114 Large T antigen; tumor suppressor, oncoprotein, an 98.8
3lz8_A 329 Putative chaperone DNAJ; structure genomics, struc 98.63
2pf4_E 174 Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, 98.47
3uo3_A 181 J-type CO-chaperone JAC1, mitochondrial; structura 98.39
3apo_A 780 DNAJ homolog subfamily C member 10; PDI family, th 98.15
2guz_B65 Mitochondrial import inner membrane translocase su 98.12
2y4t_A450 DNAJ homolog subfamily C member 3; chaperone, endo 97.93
>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J Back     alignment and structure
Probab=99.95  E-value=1.9e-28  Score=226.71  Aligned_cols=132  Identities=33%  Similarity=0.543  Sum_probs=118.4

Q ss_pred             CCCccccccccccCCccccCccccCCCCChhhhhhcchhhhhhhHHHHHHHhhhcCCCccHHHHHHhcccccCC-CCCCc
Q 011238          349 RPNANEFLDPQTAGHETLDSPMEEKTNPTTEEGKEQSQDDIETELLDEEIRLWSAGKETNIRLLLSALHHVLWP-NSGWC  427 (490)
Q Consensus       349 ~p~~~ef~d~lld~hg~tqs~~~~~~~~~~~~~kEq~eK~~l~D~Vd~KI~~Wa~GKe~NIRALLSSLh~VLW~-es~WK  427 (490)
                      .|..+.|.| ||++|||..+.+++.+.+++++++++..+.  .|.|+.+|..|+.||++|||+||++|++|||+ ...|+
T Consensus        45 ~~~~~~F~d-ll~~~g~~~~~~~~~~~~~~~~r~~~~a~~--~D~l~~~i~~W~~gk~~niRaLLssl~~vl~~~~d~Y~  121 (182)
T 1n4c_A           45 KQKAADFED-LLSGQGFNAHKDKKGPRTIAEMRKEEMAKE--MDPEKLKILEWIEGKERNIRALLSTMHTVLWAGETKWK  121 (182)
T ss_dssp             CCCCTTSSG-GGSCSSSSCCCCCSCCCCTHHHHHHHHHTC--CCTTTHHHHHHHHHHTTCHHHHHHHGGGGSCTTCCCCC
T ss_pred             CCcHhHHHH-HhcccccchhhhhhCcchHHHHHHHHHHHh--ccHHHHHHHHHHcccHHHHHHHHHHHHHHhcCccchhh
Confidence            556678999 999999999999999999999998777555  46777899999999999999999999999999 58999


Q ss_pred             ccCCCCCCChhHHHHHHHHHHHhcCCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHhhcc
Q 011238          428 SVPLTSLIESSHVKKAYQKARLCLHPDKLQQRGATAQQKYVAEKVFSVLQDAWSAFISED  487 (490)
Q Consensus       428 ~VGmsdLaTp~qVKKAYRKAiLkvHPDKL~q~Ga~~EQK~IAE~VF~eLNEAYE~Fkdqe  487 (490)
                      .|||...++..+||+||||+++++||||++.  .+.+  .+|+.+|++|++||++|++..
T Consensus       122 vLgv~~~As~~eIKkAYRklal~~HPDK~~~--~~~e--~~A~~~F~~I~eAYevLsD~~  177 (182)
T 1n4c_A          122 PVGMADLVTPEQVKKVYRKAVLVVHPDKATG--QPYE--QYAKMIFMELNDAWSEFENQG  177 (182)
T ss_dssp             CCCGGGGSSHHHHHHHHHHHHHHTCGGGGSS--CTTH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCCCCCHHHHHHHHHHHHHHHCcCcCCC--cchH--HHHHHHHHHHHHHHHHHCCHH
Confidence            9999999999999999999999999999974  3333  389999999999999999864
>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A Back     alignment and structure
>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana} Back     alignment and structure
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1 Back     alignment and structure
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1 Back     alignment and structure
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1 Back     alignment and structure
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans} Back     alignment and structure
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens} Back     alignment and structure
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens} Back     alignment and structure
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae} Back     alignment and structure
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1 Back     alignment and structure
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A Back     alignment and structure
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A Back     alignment and structure
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae} Back     alignment and structure
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens} Back     alignment and structure
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1 Back     alignment and structure
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus} Back     alignment and structure
>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1 Back     alignment and structure
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A Back     alignment and structure
>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C Back     alignment and structure
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A Back     alignment and structure
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Back     alignment and structure
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae} Back     alignment and structure
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 490
d1nz6a_98 a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [T 1e-17
>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]} Length = 98 Back     information, alignment and structure

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Auxilin J-domain
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 75.7 bits (186), Expect = 1e-17
 Identities = 37/95 (38%), Positives = 49/95 (51%), Gaps = 5/95 (5%)

Query: 394 LDEEIRLWSAGKETNIRLLLSALHHVLWPN-SGWCSVPLTSLIESSHVKKAYQKARLCLH 452
              +I  W  GKE NIR LLS +H VLW   + W  V +  L+    VKK Y+KA L +H
Sbjct: 3   EKLKILEWIEGKERNIRALLSTMHTVLWAGETKWKPVGMADLVTPEQVKKVYRKAVLVVH 62

Query: 453 PDKLQQRGATAQQKYVAEKVFSVLQDAWSAFISED 487
           PDK          +  A+ +F  L DAWS F ++ 
Sbjct: 63  PDK----ATGQPYEQYAKMIFMELNDAWSEFENQG 93

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query490
d1nz6a_98 Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]} 99.93
d1wjza_94 CSL-type zinc finger-containing protein 3 (J-domai 99.18
d1xbla_75 DnaJ chaperone, N-terminal (J) domain {Escherichia 99.12
d1iura_88 Hypothetical protein KIAA0730 {Human (Homo sapiens 99.1
d1fpoa176 HSC20 (HSCB), N-terminal (J) domain {Escherichia c 99.04
d1gh6a_114 Large T antigen, the N-terminal J domain {Simian v 98.97
d1fafa_79 Large T antigen, the N-terminal J domain {Murine p 98.89
d1hdja_77 HSP40 {Human (Homo sapiens) [TaxId: 9606]} 98.83
>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Auxilin J-domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.93  E-value=1.4e-26  Score=192.63  Aligned_cols=92  Identities=40%  Similarity=0.692  Sum_probs=84.4

Q ss_pred             hHHHHHHHhhhcCCCccHHHHHHhcccccCCC-CCCcccCCCCCCChhHHHHHHHHHHHhcCCCcccCCCCCHHHHHHHH
Q 011238          392 ELLDEEIRLWSAGKETNIRLLLSALHHVLWPN-SGWCSVPLTSLIESSHVKKAYQKARLCLHPDKLQQRGATAQQKYVAE  470 (490)
Q Consensus       392 D~Vd~KI~~Wa~GKe~NIRALLSSLh~VLW~e-s~WK~VGmsdLaTp~qVKKAYRKAiLkvHPDKL~q~Ga~~EQK~IAE  470 (490)
                      |.|+.+|..|++||++|||+||++||.|||++ +.|++|||.+++++++||+|||++++.+||||++..    ..+..|+
T Consensus         1 d~~~~~i~~W~~~~~~~ir~lL~~l~~vl~~~~~~y~~Lgl~~~~t~~eIk~aYr~l~~~~HPDk~~~~----~~~~~a~   76 (98)
T d1nz6a_           1 DPEKLKILEWIEGKERNIRALLSTMHTVLWAGETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQ----PYEQYAK   76 (98)
T ss_dssp             CHHHHHHHHHHTTTTTCHHHHHTTGGGTSCTTCCSCCCCCGGGCCSHHHHHHHHHHHHHHSCHHHHTTS----TTHHHHH
T ss_pred             ChHHHHHHHHHhcchhhHHHHHHhhhhhcCCcccCCeecCCCccCCHHHHHHHHHHHHHHhccccCCCh----HHHHHHH
Confidence            56788999999999999999999999999985 789999999999999999999999999999998743    2356799


Q ss_pred             HHHHHHHHHHHHHhhcc
Q 011238          471 KVFSVLQDAWSAFISED  487 (490)
Q Consensus       471 ~VF~eLNEAYE~Fkdqe  487 (490)
                      .+|..|++||++|++.+
T Consensus        77 ~~f~~I~~Ay~~L~d~~   93 (98)
T d1nz6a_          77 MIFMELNDAWSEFENQG   93 (98)
T ss_dssp             HHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHCCHH
Confidence            99999999999999876
>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]} Back     information, alignment and structure
>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]} Back     information, alignment and structure
>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure