Citrus Sinensis ID: 011265

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490
MDSNYTVIPKNSFLELQVYDNDQNPPSRIKSHVKMQTFDEEHDSDSKNFVDHVDNNQDDEHDDYPLISAKSNEGSGVAGAVFNLTTTVIGAGIMALPAAMKVLGLAVGFVLIIFMGILSEVSVELLVRFSVLCKATSYGEVVQYALGRPAKILSEICIILNNAGVLVVYLIIVGDVMSGSLHHTGVFDQWLGKGMWDHRKLLILIVLVVFLAPLCALDRIESLSMSSAASVALAVVFVVVCFFIAFIKLVEGKLDPPRMSPDFGSKKAILDLLVVIPIMTNAYVCHFNVQPIYNELEGRTPQKMNHVGRLTTILCIVVYSSTAISGYLLFGKDTESDVLTNFDKDLGIGYSTALNYIVRVGYIFHLILVFPVVHFSLRQTVDALFFEGSAPLLESRKRSLALTVVLLVLIYFGSTMIPSIWTAFKFTGATTAVSLGFIFPPLVALRLRKEGPGLSLGEKFLSGLMLVLAIVVSFVGVIGNIYSLESKSDD
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHEEEEEEEEEcccccccccccccccccccccccccccHHHHHHHcccccccHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHcccccccccccccHHHHHHHHHHHHHHHccHHcHHHHHHHHHHHHccccccccccccccEEHHHHHHHHHHHHHHHccccHHHHHHHHcHHHHHHHHHccHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
cccccEEccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHccHcHHHHHHHHHHHHHHHHEEEEEEHHHHHHHHHHHHccccccccccccccccEEEEEEEEEEEEEHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHccEEEHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
mdsnytvipknsflelqvydndqnppsrikshvkmqtfdeehdsdsknfvdhvdnnqddehddyplisaksnegsgvagAVFNLTTTVIGAGIMALPAAMKVLGLAVGFVLIIFMGILSEVSVELLVRFSVLCKATSYGEVVQYALGRPAKILSEICIILNNAGVLVVYLIIVGdvmsgslhhtgvfdqwlgkgmwdhRKLLILIVLVVFLAPLCALDRIESLSMSSAASVALAVVFVVVCFFIAFIKLVegkldpprmspdfgskKAILDLLVVIPIMTnayvchfnvqpiynelegrtpqkmnhvgRLTTILCIVVYSSTAISGYLlfgkdtesdvltnfdkdlgigysTALNYIVRVGYIFHLILVFPVVHFSLRQTVDALFFEGSAPLLESRKRSLALTVVLLVLIYFGSTMIPSIWTAFKFTGATTAVSLGFIFPPLVALRlrkegpglslgeKFLSGLMLVLAIVVSFVGVIGNIYslesksdd
mdsnytvipknsflelqVYDNDQNPPSRIKSHVKMQTFDEEHDSDSKNFVDHVDNNQDDEHDDYPLISAKSNEGSGVAGAVFNLTTTVIGAGIMALPAAMKVLGLAVGFVLIIFMGILSEVSVELLVRFSVLCKATSYGEVVQYALGRPAKILSEICIILNNAGVLVVYLIIVGDVMSGSLHHTGVFDQWLGKGMWDHRKLLILIVLVVFLAPLCALDRIESLSMSSAASVALAVVFVVVCFFIAFIKLVEGKLDPPRMSPDFGSKKAILDLLVVIPIMTNAYVCHFNVQPIYNELEGRTPQKMNHVGRLTTILCIVVYSSTAISGYLLFGKDTESDVLTNFDKDLGIGYSTALNYIVRVGYIFHLILVFPVVHFSLRQTVDALFFEGSAPLLESRKRSLALTVVLLVLIYFGSTMIPSIWTAFKFTGATTAVSLGFIFPPLVALRLRKEGPGLSLGEKFLSGLMLVLAIVVSFVGVIGNIYSLESKSDD
MDSNYTVIPKNSFLELQVYDNDQNPPSRIKSHVKMQTFDEEHDSDSKNFVDHVDNNQDDEHDDYPLISAKSNEGSGVAGAVFNLTTTVIGAGIMALPAAMKVLGLAVGFVLIIFMGILSEVSVELLVRFSVLCKATSYGEVVQYALGRPAKILSEICIILNNAGVLVVYLIIVGDVMSGSLHHTGVFDQWLGKGMWDHRKllilivlvvflAPLCALDRIEslsmssaasvalavvfvvvcffiafiKLVEGKLDPPRMSPDFGSKKAILDLLVVIPIMTNAYVCHFNVQPIYNELEGRTPQKMNHVGRLTTILCIVVYSSTAISGYLLFGKDTESDVLTNFDKDLGIGYSTALNYIVRVGYIFHLILVFPVVHFSLRQTVDALFFEGSAPLLESRKRSLALTVVLLVLIYFGSTMIPSIWTAFKFTGATTAVSLGFIFPPLVALRLRKEGPGLSLGEKFLSGLMLVLAIVVSFVGVIGNIYSLESKSDD
************FLEL***********************************************************GVAGAVFNLTTTVIGAGIMALPAAMKVLGLAVGFVLIIFMGILSEVSVELLVRFSVLCKATSYGEVVQYALGRPAKILSEICIILNNAGVLVVYLIIVGDVMSGSLHHTGVFDQWLGKGMWDHRKLLILIVLVVFLAPLCALDRIESLSMSSAASVALAVVFVVVCFFIAFIKLVEGKL********FGSKKAILDLLVVIPIMTNAYVCHFNVQPIYNELEGRTPQKMNHVGRLTTILCIVVYSSTAISGYLLFGKDTESDVLTNFDKDLGIGYSTALNYIVRVGYIFHLILVFPVVHFSLRQTVDALFFEGSAPLLESRKRSLALTVVLLVLIYFGSTMIPSIWTAFKFTGATTAVSLGFIFPPLVALRLRKEGPGLSLGEKFLSGLMLVLAIVVSFVGVIGNIYSL******
*******************************************************************************AVFNLTTTVIGAGIMALPAAMKVLGLAVGFVLIIFMGILSEVSVELLVRFSVLCKATSYGEVVQYALGRPAKILSEICIILNNAGVLVVYLIIVGDVMSGSLHHTGVFDQWLGKGMWDHRKLLILIVLVVFLAPLCALDRIESLSMSSAASVALAVVFVVVCFFIAFIKLVEGKLDPPRMSPDFGSKKAILDLLVVIPIMTNAYVCHFNVQPIYNELEGRTPQKMNHVGRLTTILCIVVYSSTAISGYLLFGKDTESDVLTNFDKDLGIGYSTALNYIVRVGYIFHLILVFPVVHFSLRQTVDALFFEGSAPLLESRKRSLALTVVLLVLIYFGSTMIPSIWTAFKFTGATTAVSLGFIFPPLVALRLRKEGPGLSLGEKFLSGLMLVLAIVVSFVGVIGNIY*LESK***
MDSNYTVIPKNSFLELQVYDNDQNPPSRIKSHVKMQ*********SKNFVDHVDNNQDDEHDDYPLISAKSNEGSGVAGAVFNLTTTVIGAGIMALPAAMKVLGLAVGFVLIIFMGILSEVSVELLVRFSVLCKATSYGEVVQYALGRPAKILSEICIILNNAGVLVVYLIIVGDVMSGSLHHTGVFDQWLGKGMWDHRKLLILIVLVVFLAPLCALDRIESLSMSSAASVALAVVFVVVCFFIAFIKLVEGKLDPPRMSPDFGSKKAILDLLVVIPIMTNAYVCHFNVQPIYNELEGRTPQKMNHVGRLTTILCIVVYSSTAISGYLLFGKDTESDVLTNFDKDLGIGYSTALNYIVRVGYIFHLILVFPVVHFSLRQTVDALFFEGSAPLLESRKRSLALTVVLLVLIYFGSTMIPSIWTAFKFTGATTAVSLGFIFPPLVALRLRKEGPGLSLGEKFLSGLMLVLAIVVSFVGVIGNIYSLESKSDD
***NYT*IPKNSFLELQ*********************************************DYPLISAKSNEGSGVAGAVFNLTTTVIGAGIMALPAAMKVLGLAVGFVLIIFMGILSEVSVELLVRFSVLCKATSYGEVVQYALGRPAKILSEICIILNNAGVLVVYLIIVGDVMSGSLHHTGVFDQWLGKGMWDHRKLLILIVLVVFLAPLCALDRIESLSMSSAASVALAVVFVVVCFFIAFIKLVEGKLDPPRMSPDFGSKKAILDLLVVIPIMTNAYVCHFNVQPIYNELEGRTPQKMNHVGRLTTILCIVVYSSTAISGYLLFGKDTESDVLTNFDKDLGIGYSTALNYIVRVGYIFHLILVFPVVHFSLRQTVDALFFEGSAPLLESRKRSLALTVVLLVLIYFGSTMIPSIWTAFKFTGATTAVSLGFIFPPLVALRLRKEGPGLSLGEKFLSGLMLVLAIVVSFVGVIGNIYSLESK***
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MDSNYTVIPKNSFLELQVYDNDQNPPSRIKSHVKMQTFDEEHDSDSKNFVDHVDNNQDDEHDDYPLISAKSNEGSGVAGAVFNLTTTVIGAGIMALPAAMKVLGLAVGFVLIIFMGILSEVSVELLVRFSVLCKATSYGEVVQYALGRPAKILSEICIILNNAGVLVVYLIIVGDVMSGSLHHTGVFDQWLGKGMWDHRKLLILIVLVVFLAPLCALDRIESLSMSSAASVALAVVFVVVCFFIAFIKLVEGKLDPPRMSPDFGSKKAILDLLVVIPIMTNAYVCHFNVQPIYNELEGRTPQKMNHVGRLTTILCIVVYSSTAISGYLLFGKDTESDVLTNFDKDLGIGYSTALNYIVRVGYIFHLILVFPVVHFSLRQTVDALFFEGSAPLLESRKRSLALTVVLLVLIYFGSTMIPSIWTAFKFTGATTAVSLGFIFPPLVALRLRKEGPGLSLGEKFLSGLMLVLAIVVSFVGVIGNIYSLESKSDD
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query490 2.2.26 [Sep-21-2011]
Q28HE5448 Probable sodium-coupled n yes no 0.840 0.919 0.280 3e-32
Q5SPB1504 Sodium-coupled neutral am no no 0.877 0.853 0.277 5e-30
Q9JHZ9504 Sodium-coupled neutral am yes no 0.793 0.771 0.264 6e-29
Q5XH90493 Sodium-coupled neutral am no no 0.818 0.813 0.258 7e-29
Q9DCP2505 Sodium-coupled neutral am yes no 0.820 0.796 0.258 2e-28
Q5F468501 Sodium-coupled neutral am no no 0.859 0.840 0.271 4e-28
Q8IZM9456 Probable sodium-coupled n no no 0.751 0.807 0.271 1e-27
Q99624504 Sodium-coupled neutral am no no 0.738 0.718 0.273 5e-27
Q9JM15485 Sodium-coupled neutral am no no 0.910 0.919 0.257 7e-27
Q5R443487 Sodium-coupled neutral am yes no 0.910 0.915 0.260 1e-26
>sp|Q28HE5|S38A6_XENTR Probable sodium-coupled neutral amino acid transporter 6 OS=Xenopus tropicalis GN=slc38a6 PE=2 SV=1 Back     alignment and function desciption
 Score =  140 bits (352), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 127/453 (28%), Positives = 220/453 (48%), Gaps = 41/453 (9%)

Query: 42  HDSDSKNFVDHVDNNQDDEHDD--YPLIS----AKSNEGSGVAGAVFNLTTTVIGAGIMA 95
             SDS   ++ +D +Q     D   PL++     +S+ G+    AVFNL   ++G+GI+ 
Sbjct: 2   QASDSS--INTLDGHQVSAGRDESTPLLANSPQRRSSGGTSFGFAVFNLMNAIMGSGILG 59

Query: 96  LPAAMKVLGLAVGF-VLIIFMGILSEVSVELLVRFSVLCKATSYGEVVQYALGRPAKILS 154
           L  AM   G+ +GF  L++ + +L+  S+ LL+R  +L   TSY ++  YA GR  K+L 
Sbjct: 60  LSYAMAKTGI-LGFSALLLIVALLAAYSIHLLLRMCLLTAVTSYEDLGLYAFGRSGKVLV 118

Query: 155 EICIILNNAGVLVVYLIIVGDVMSGSLHHTGVFDQWLGKGMWDHRKLLILIVLVVFLAPL 214
              I++ N G +  YL I+   +  ++          G+  +   + L++I  V  + PL
Sbjct: 119 ACTILIQNVGAMSSYLFIIKSELPAAI--ASFLPGAQGEPWYLDGRTLLIITSVCIVLPL 176

Query: 215 CALDRIESLSMSSAASVALAVVFVVVCFF---------------IAFIKLVEGKLDPPRM 259
             L +I  L  +S+ S    V F VV                  + F++        P++
Sbjct: 177 ALLPKIGFLGYTSSLSFFFMVYFAVVIVIKKWNIPCPLPPLNHTVTFLQAPNISECKPKL 236

Query: 260 SPDFGSKKAILDLLVVIPIMTNAYVCHFNVQPIYNELEGRTPQKMNHVGRLTTILCIVVY 319
             DF  + A       +P M  +++CH +V PIY EL+  +  KM +V  +   L  ++Y
Sbjct: 237 F-DFSKESAF-----ALPTMAFSFLCHTSVLPIYCELKSPSKSKMQNVANVGIALSFLIY 290

Query: 320 SSTAISGYLLFGKDTESDVLTNFDKDLGIGYSTALNYIVRVGYIFHLILVFPVVHFSLRQ 379
             +A+ GYL F  + +S++L  + K L       L   VR+  +  ++L  P++HF  R+
Sbjct: 291 YISALFGYLTFYDNVKSELLQGYSKYLP---KDVLIITVRLCILLAVLLTVPLIHFPARK 347

Query: 380 TVDALFFEGSAPLLESRKRSLALTVVLLVLIYFGSTMIPSIWTAFKFTGATTAVSLGFIF 439
            V  +FF    P   S  R + +T+VL ++I   +  +P + + F   G+TT+  L F+F
Sbjct: 348 AVMMMFFS-RYPF--SYIRHILVTLVLNIIIVLLAIYVPDMRSVFGVVGSTTSTCLLFVF 404

Query: 440 PPLVALRLRKEGPGLSLGEKFLSGLMLVLAIVV 472
           P L  ++L +E    S  +KF +  +LVL I +
Sbjct: 405 PGLFYVKLGRE--DCSSPQKFGACGLLVLGICI 435
Probable sodium-dependent amino acid/proton antiporter.
Xenopus tropicalis (taxid: 8364)
>sp|Q5SPB1|S38A2_DANRE Sodium-coupled neutral amino acid transporter 2 OS=Danio rerio GN=slc38a2 PE=3 SV=1 Back     alignment and function description
>sp|Q9JHZ9|S38A3_RAT Sodium-coupled neutral amino acid transporter 3 OS=Rattus norvegicus GN=Slc38a3 PE=2 SV=1 Back     alignment and function description
>sp|Q5XH90|S38A2_XENTR Sodium-coupled neutral amino acid transporter 2 OS=Xenopus tropicalis GN=slc38a2 PE=2 SV=1 Back     alignment and function description
>sp|Q9DCP2|S38A3_MOUSE Sodium-coupled neutral amino acid transporter 3 OS=Mus musculus GN=Slc38a3 PE=1 SV=1 Back     alignment and function description
>sp|Q5F468|S38A2_CHICK Sodium-coupled neutral amino acid transporter 2 OS=Gallus gallus GN=SLC38A2 PE=2 SV=2 Back     alignment and function description
>sp|Q8IZM9|S38A6_HUMAN Probable sodium-coupled neutral amino acid transporter 6 OS=Homo sapiens GN=SLC38A6 PE=1 SV=2 Back     alignment and function description
>sp|Q99624|S38A3_HUMAN Sodium-coupled neutral amino acid transporter 3 OS=Homo sapiens GN=SLC38A3 PE=2 SV=1 Back     alignment and function description
>sp|Q9JM15|S38A1_RAT Sodium-coupled neutral amino acid transporter 1 OS=Rattus norvegicus GN=Slc38a1 PE=1 SV=1 Back     alignment and function description
>sp|Q5R443|S38A1_PONAB Sodium-coupled neutral amino acid transporter 1 OS=Pongo abelii GN=SLC38A1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query490
24461850462 CTV.3 [Citrus trifoliata] 0.942 1.0 0.930 0.0
357455311496 Sodium-coupled neutral amino acid transp 0.971 0.959 0.724 0.0
356557235485 PREDICTED: sodium-coupled neutral amino 0.975 0.985 0.746 0.0
225443035494 PREDICTED: sodium-coupled neutral amino 0.985 0.977 0.72 0.0
224134907498 amino acid transporter [Populus trichoca 0.987 0.971 0.741 0.0
255579246497 amino acid transporter, putative [Ricinu 0.995 0.981 0.75 0.0
147827330562 hypothetical protein VITISV_036714 [Viti 0.977 0.852 0.720 0.0
356550636485 PREDICTED: sodium-coupled neutral amino 0.977 0.987 0.747 0.0
18412864489 transmembrane amino acid transporter-lik 0.985 0.987 0.715 0.0
224054334468 amino acid transporter [Populus trichoca 0.936 0.980 0.734 0.0
>gi|24461850|gb|AAN62337.1|AF506028_4 CTV.3 [Citrus trifoliata] Back     alignment and taxonomy information
 Score =  852 bits (2202), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 456/490 (93%), Positives = 459/490 (93%), Gaps = 28/490 (5%)

Query: 1   MDSNYTVIPKNSFLELQVYDNDQNPPSRIKSHVKMQTFDEEHDSDSKNFVDHVDNNQDDE 60
           MDSNYTVIPKNSFLELQVYDNDQNPPSRI SHVK+QTFDEEHD+DSKNFVDHVDNNQDDE
Sbjct: 1   MDSNYTVIPKNSFLELQVYDNDQNPPSRINSHVKIQTFDEEHDADSKNFVDHVDNNQDDE 60

Query: 61  HDDYPLISAKSNEGSGVAGAVFNLTTTVIGAGIMALPAAMKVLGLAVGFVLIIFMGILSE 120
           HDDYPLISAKSNEGSGVAGAVFNLTTTVIGAGIMALPAAMKVLGLAVGFVLIIFMGILSE
Sbjct: 61  HDDYPLISAKSNEGSGVAGAVFNLTTTVIGAGIMALPAAMKVLGLAVGFVLIIFMGILSE 120

Query: 121 VSVELLVRFSVLCKATSYGEVVQYALGRPAKILSEICIILNNAGVLVVYLIIVGDVMSGS 180
           VSVELLVRFSVLCKATSYGEVVQYALGRPAKILSEICIILNNAGVLVVYLIIVGDVMSGS
Sbjct: 121 VSVELLVRFSVLCKATSYGEVVQYALGRPAKILSEICIILNNAGVLVVYLIIVGDVMSGS 180

Query: 181 LHHTGVFDQWLGKGMWDHRKLLILIVLVVFLAPLCALDRIESLSMSSAASVALAVVFVVV 240
           LHHTGVFDQWLGKGMWDHRKLLILIVLVVFLAPLCALDRIESLSMSSAASVALAVVFVVV
Sbjct: 181 LHHTGVFDQWLGKGMWDHRKLLILIVLVVFLAPLCALDRIESLSMSSAASVALAVVFVVV 240

Query: 241 CFFIAFIKLVEGKLDPPRMSPDFGSKKAILDLLVVIPIMTNAYVCHFNVQPIYNELEGRT 300
           CFFIAFIKLVEGKLDPPRMSPDFGSKKAILDLLVVIPIMTNAYVCHFNVQPIYNELEGRT
Sbjct: 241 CFFIAFIKLVEGKLDPPRMSPDFGSKKAILDLLVVIPIMTNAYVCHFNVQPIYNELEGRT 300

Query: 301 PQKMNHVGRLTTILCIVVYSSTAISGYLLFGKDTESDVLTNFDKDLGIGYSTALNYIVRV 360
           PQKMNHVGRLTTILCIVVYSSTAISGYLLFGKDTESDVLTNFDKDLGIGYSTALNYIVR 
Sbjct: 301 PQKMNHVGRLTTILCIVVYSSTAISGYLLFGKDTESDVLTNFDKDLGIGYSTALNYIVR- 359

Query: 361 GYIFHLILVFPVVHFSLRQTVDALFFEGSAPLLESRKRSLALTVVLLVLIYFGSTMIPSI 420
                                      GSAPLLESRKRSLALT VLLVLIYFGSTMIPSI
Sbjct: 360 ---------------------------GSAPLLESRKRSLALTGVLLVLIYFGSTMIPSI 392

Query: 421 WTAFKFTGATTAVSLGFIFPPLVALRLRKEGPGLSLGEKFLSGLMLVLAIVVSFVGVIGN 480
           WTAFKFTGATTAVSLGFIFPPLVALRLRKEGPGLSL EKFLSGLMLVLAIVVSFVGV+GN
Sbjct: 393 WTAFKFTGATTAVSLGFIFPPLVALRLRKEGPGLSLWEKFLSGLMLVLAIVVSFVGVMGN 452

Query: 481 IYSLESKSDD 490
           IYSLESKSDD
Sbjct: 453 IYSLESKSDD 462

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|357455311|ref|XP_003597936.1| Sodium-coupled neutral amino acid transporter [Medicago truncatula] gi|355486984|gb|AES68187.1| Sodium-coupled neutral amino acid transporter [Medicago truncatula] Back     alignment and taxonomy information
>gi|356557235|ref|XP_003546923.1| PREDICTED: sodium-coupled neutral amino acid transporter 4-like [Glycine max] Back     alignment and taxonomy information
>gi|225443035|ref|XP_002268792.1| PREDICTED: sodium-coupled neutral amino acid transporter 4 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224134907|ref|XP_002327519.1| amino acid transporter [Populus trichocarpa] gi|222836073|gb|EEE74494.1| amino acid transporter [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255579246|ref|XP_002530469.1| amino acid transporter, putative [Ricinus communis] gi|223530014|gb|EEF31939.1| amino acid transporter, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|147827330|emb|CAN77569.1| hypothetical protein VITISV_036714 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356550636|ref|XP_003543691.1| PREDICTED: sodium-coupled neutral amino acid transporter 4-like [Glycine max] Back     alignment and taxonomy information
>gi|18412864|ref|NP_565239.1| transmembrane amino acid transporter-like protein [Arabidopsis thaliana] gi|6730737|gb|AAF27127.1|AC018849_15 hypothetical protein; 45530-44061 [Arabidopsis thaliana] gi|16226719|gb|AAL16241.1|AF428472_1 At1g80510/T21F11_16 [Arabidopsis thaliana] gi|23506157|gb|AAN31090.1| At1g80510/T21F11_16 [Arabidopsis thaliana] gi|332198293|gb|AEE36414.1| transmembrane amino acid transporter-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|224054334|ref|XP_002298208.1| amino acid transporter [Populus trichocarpa] gi|222845466|gb|EEE83013.1| amino acid transporter [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query490
TAIR|locus:2198968489 AT1G80510 [Arabidopsis thalian 0.993 0.995 0.653 1.2e-166
TAIR|locus:2102926460 AT3G30390 [Arabidopsis thalian 0.838 0.893 0.405 5.8e-82
TAIR|locus:2166615456 AT5G38820 "AT5G38820" [Arabido 0.836 0.899 0.397 2.3e-78
TAIR|locus:2078381435 AT3G56200 [Arabidopsis thalian 0.842 0.949 0.344 3.5e-68
TAIR|locus:2063068440 AT2G40420 "AT2G40420" [Arabido 0.857 0.954 0.348 9.2e-68
ZFIN|ZDB-GENE-040718-395472 slc38a5b "solute carrier famil 0.383 0.398 0.326 9.5e-30
UNIPROTKB|E1BXH7466 SLC38A6 "Uncharacterized prote 0.342 0.360 0.312 4.3e-29
UNIPROTKB|F1SRV0456 SLC38A6 "Uncharacterized prote 0.385 0.414 0.294 2.2e-27
ZFIN|ZDB-GENE-030131-9659504 slc38a2 "solute carrier family 0.387 0.376 0.314 2.3e-27
UNIPROTKB|E1BND4456 SLC38A6 "Uncharacterized prote 0.381 0.410 0.286 2.6e-27
TAIR|locus:2198968 AT1G80510 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1621 (575.7 bits), Expect = 1.2e-166, P = 1.2e-166
 Identities = 321/491 (65%), Positives = 386/491 (78%)

Query:     1 MDSNYTVIPKNSFLELQVYDNDQNPPSRIKSHVKMQTFDEEHDSDSKNFVDHVD-NNQDD 59
             MDS+Y+VI K S++ELQ    +  P +++    + ++F  + D D++N V   D ++ D 
Sbjct:     1 MDSSYSVISKTSYVELQKPTVNGKPRNKLLPSDE-ESFVNDFD-DARNGVGGEDADDLDF 58

Query:    60 EHDDYPLISAKS-NEGSGVAGAVFNLTTTVIGAGIMALPAAMKVLGLAVGFVLIIFMGIL 118
             +  DYPL+  KS N+GSG+ GAVFNLTT++IGAGIMALPA MKVLGL +GFVLII M +L
Sbjct:    59 DVADYPLVHGKSSNQGSGIYGAVFNLTTSIIGAGIMALPATMKVLGLVLGFVLIILMALL 118

Query:   119 SEVSVELLVRFSVLCKATSYGEVVQYALGRPAKILSEICIILNNAGVLVVYLIIVGDVMS 178
             SE+SVELLVRFSVL K+ SYGEVVQ+ALG+ A++LSEICII+NN GVLVVYLII+GDVMS
Sbjct:   119 SEISVELLVRFSVLYKSKSYGEVVQFALGKTARVLSEICIIVNNGGVLVVYLIIMGDVMS 178

Query:   179 GSLHHTGVFDQWLGKGMWDHRKXXXXXXXXXXXAPLCALDRIEXXXXXXXXXXXXXXXXX 238
             GSLHH GV DQWLG G WDHRK           APLCAL++I+                 
Sbjct:   179 GSLHHIGVLDQWLGNGFWDHRKVLILIVMVIFLAPLCALNKIDSLSVTSAASVALAVVFV 238

Query:   239 XXXXXXXXXKLVEGKLDPPRMSPDFGSKKAILDLLVVIPIMTNAYVCHFNVQPIYNELEG 298
                      KL+EG +DPPR+SPDFGSK+AILDLLVVIPIM+NAYVCHFNVQPIYNELEG
Sbjct:   239 VVCFVVATIKLIEGTIDPPRLSPDFGSKQAILDLLVVIPIMSNAYVCHFNVQPIYNELEG 298

Query:   299 RTPQKMNHVGRLTTILCIVVYSSTAISGYLLFGKDTESDVLTNFDKDLGIGYSTALNYIV 358
             R+P KMN VGR+TT +C+VVY+STA+SGYLLFGKDTESD+LTNFD+DLGI +S+A+NYIV
Sbjct:   299 RSPHKMNRVGRITTAICVVVYASTAVSGYLLFGKDTESDILTNFDQDLGIRFSSAVNYIV 358

Query:   359 RVGYIFHLILVFPVVHFSLRQTVDALFFEGSAPLLESRKRSLALTVVLLVLIYFGSTMIP 418
             R+GYI HL+LVFPV+HFSLR+TV+ L FEGS PL ES+KRSL LTVVLL LIY GSTMIP
Sbjct:   359 RIGYILHLVLVFPVIHFSLRETVNTLLFEGSPPLSESKKRSLGLTVVLLALIYIGSTMIP 418

Query:   419 SIWTAFKFTGATTAVSLGFIFPPLVALRLRKEGPGLSLGEKFLSGLMLVLAIVVSFVGVI 478
             +IWTAFKFTGAT+AVSLGF FP L+ALRL K+   LS  E+ +S LML+LA+VVS VG I
Sbjct:   419 NIWTAFKFTGATSAVSLGFTFPALIALRLGKQSNSLSFVERSVSWLMLILAVVVSIVGTI 478

Query:   479 GNIYSLESKSD 489
             GNIYSLESKSD
Sbjct:   479 GNIYSLESKSD 489
GO:0005886 "plasma membrane" evidence=ISM
GO:0006865 "amino acid transport" evidence=ISS;RCA
GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS
GO:0016020 "membrane" evidence=ISS
TAIR|locus:2102926 AT3G30390 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2166615 AT5G38820 "AT5G38820" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2078381 AT3G56200 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2063068 AT2G40420 "AT2G40420" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040718-395 slc38a5b "solute carrier family 38, member 5b" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|E1BXH7 SLC38A6 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1SRV0 SLC38A6 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-9659 slc38a2 "solute carrier family 38, member 2" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|E1BND4 SLC38A6 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00033226001
SubName- Full=Chromosome chr9 scaffold_65, whole genome shotgun sequence; (494 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query490
pfam01490406 pfam01490, Aa_trans, Transmembrane amino acid tran 1e-46
COG0814415 COG0814, SdaC, Amino acid permeases [Amino acid tr 1e-28
PTZ00206467 PTZ00206, PTZ00206, amino acid transporter; Provis 2e-24
TIGR00837381 TIGR00837, araaP, aromatic amino acid transport pr 2e-05
pfam03222393 pfam03222, Trp_Tyr_perm, Tryptophan/tyrosine perme 5e-05
COG0531466 COG0531, PotE, Amino acid transporters [Amino acid 0.001
PRK15132403 PRK15132, PRK15132, tyrosine transporter TyrP; Pro 0.004
>gnl|CDD|216528 pfam01490, Aa_trans, Transmembrane amino acid transporter protein Back     alignment and domain information 
 Score =  166 bits (422), Expect = 1e-46
 Identities = 105/415 (25%), Positives = 189/415 (45%), Gaps = 32/415 (7%)

Query: 80  AVFNLTTTVIGAGIMALPAAMKVLGLAVGFVLIIFMGILSEVSVELLVR------FSVLC 133
           AVFNL   +IGAG+++LP A K LG   G +L++ +G++S  ++ LLV+           
Sbjct: 8   AVFNLIKAIIGAGVLSLPYAFKQLGWIPGLILLVIVGLISLYTLHLLVQCSKYVDKVKGK 67

Query: 134 KATSYGEVVQYALGRPAKILSEICIILNNAGVLVVYLIIVGDVMSGSLHHTGVFDQWLGK 193
           +  SYG++     G   K+L    I++N  GV + YLI  GD +        +FD +   
Sbjct: 68  RRKSYGDLGYRLFGPKGKLLILFAILVNLFGVCISYLIFAGDNLP------AIFDSFF-- 119

Query: 194 GMWDHRKLLILIVLVVFLAPLCALDRIESLSMSSAASVALAVVFVVVCFFIAFIKLVEGK 253
                  +  +I+  +   PL  +  + +LS+ S  +   ++  V++   +A + ++  +
Sbjct: 120 DTCHISLVYFIIIFGLIFIPLSFIPNLSALSILSLVAAVSSLYIVILVLSVAELGVLTAQ 179

Query: 254 LDPPRMSPDFGSKKAILDLLVVIPIMTNAYVCHFNVQPIYNELEGRTPQKMNHVGR---L 310
                 +           L + I I+  A+  H  + PI N +  ++P K   + +    
Sbjct: 180 GVGSLGAKTNIKLA---RLFLAIGIIVFAFEGHAVLLPIQNTM--KSPSKFKAMTKVLLT 234

Query: 311 TTILCIVVYSSTAISGYLLFGKDTESDVLTNFDKDLGIGYSTALNYIVRVGYIFHLILVF 370
             I+  V+Y    + GYL FG + + ++L N  K      S  L  I  +  + HL+L +
Sbjct: 235 AIIIVTVLYILVGLVGYLAFGNNVKGNILLNLPK------SDWLIDIANLLLVLHLLLSY 288

Query: 371 PVVHFSLRQTVDALFFEGSAPLLESRKRSL---ALTVVLLVLIYFGSTMIPSIWTAFKFT 427
           P+  F +RQ V+ L F   A    + K  L    +   L+V+ Y  +  +P +       
Sbjct: 289 PLQAFPIRQIVENLLFRKGASGKHNPKSKLLRVVIRSGLVVITYLIAISVPFLGDFLSLV 348

Query: 428 GATTAVSLGFIFPPLVALRLRKEGPGLSLGEKFLSGLMLVLAIVVSFVGVIGNIY 482
           GAT+   L FI PPL  L+L+K     SL + +   ++ V+ IV+  + +   + 
Sbjct: 349 GATSGAPLTFILPPLFHLKLKKT-KKKSLEKLWKPDILDVICIVIGLLLMAYGVA 402

This transmembrane region is found in many amino acid transporters including UNC-47 and MTR. UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT). UNC-47 is predicted to have 10 transmembrane domains. MTR is a N system amino acid transporter system protein involved in methyltryptophan resistance. Other members of this family include proline transporters and amino acid permeases. Length = 406
>gnl|CDD|223884 COG0814, SdaC, Amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|240313 PTZ00206, PTZ00206, amino acid transporter; Provisional Back     alignment and domain information
>gnl|CDD|233146 TIGR00837, araaP, aromatic amino acid transport protein Back     alignment and domain information
>gnl|CDD|112053 pfam03222, Trp_Tyr_perm, Tryptophan/tyrosine permease family Back     alignment and domain information
>gnl|CDD|223605 COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|185086 PRK15132, PRK15132, tyrosine transporter TyrP; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 490
PTZ00206467 amino acid transporter; Provisional 100.0
KOG1304449 consensus Amino acid transporters [Amino acid tran 100.0
KOG1303437 consensus Amino acid transporters [Amino acid tran 100.0
PF01490409 Aa_trans: Transmembrane amino acid transporter pro 100.0
PLN03074473 auxin influx permease; Provisional 100.0
KOG1305411 consensus Amino acid transporter protein [Amino ac 100.0
KOG4303524 consensus Vesicular inhibitory amino acid transpor 100.0
COG0814415 SdaC Amino acid permeases [Amino acid transport an 100.0
PF03222394 Trp_Tyr_perm: Tryptophan/tyrosine permease family; 99.94
PRK10483414 tryptophan permease; Provisional 99.93
PRK15132403 tyrosine transporter TyrP; Provisional 99.93
TIGR00837381 araaP aromatic amino acid transport protein. aroma 99.93
PRK09664415 tryptophan permease TnaB; Provisional 99.92
PRK13629443 threonine/serine transporter TdcC; Provisional 99.89
TIGR00814397 stp serine transporter. The HAAAP family includes 99.86
PRK10655438 potE putrescine transporter; Provisional 99.73
PRK10249458 phenylalanine transporter; Provisional 99.7
PRK15049499 L-asparagine permease; Provisional 99.7
TIGR00905473 2A0302 transporter, basic amino acid/polyamine ant 99.68
PRK10644445 arginine:agmatin antiporter; Provisional 99.66
PRK10435435 cadB lysine/cadaverine antiporter; Provisional 99.66
TIGR03810468 arg_ornith_anti arginine/ornithine antiporter. Mem 99.65
PRK11049469 D-alanine/D-serine/glycine permease; Provisional 99.65
TIGR00909429 2A0306 amino acid transporter. 99.65
TIGR00930 953 2a30 K-Cl cotransporter. 99.64
KOG1287479 consensus Amino acid transporters [Amino acid tran 99.64
PRK11387471 S-methylmethionine transporter; Provisional 99.63
PRK11021410 putative transporter; Provisional 99.62
TIGR00911501 2A0308 L-type amino acid transporter. 99.62
PRK10746461 putative transport protein YifK; Provisional 99.61
TIGR01773452 GABAperm gamma-aminobutyrate permease. GabP is hig 99.61
PRK10238456 aromatic amino acid transporter; Provisional 99.6
TIGR00913478 2A0310 amino acid permease (yeast). 99.6
TIGR00912359 2A0309 spore germination protein (amino acid perme 99.58
PRK10836489 lysine transporter; Provisional 99.57
PRK10580457 proY putative proline-specific permease; Provision 99.56
TIGR00908442 2A0305 ethanolamine permease. The three genes used 99.55
TIGR00906 557 2A0303 cationic amino acid transport permease. 99.55
PRK11357445 frlA putative fructoselysine transporter; Provisio 99.54
PRK10197446 gamma-aminobutyrate transporter; Provisional 99.52
PF13520426 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G 99.51
COG1113462 AnsP Gamma-aminobutyrate permease and related perm 99.51
COG0531466 PotE Amino acid transporters [Amino acid transport 99.44
TIGR03428475 ureacarb_perm permease, urea carboxylase system. A 99.35
PRK15238496 inner membrane transporter YjeM; Provisional 99.33
COG0833541 LysP Amino acid transporters [Amino acid transport 99.32
PF03845320 Spore_permease: Spore germination protein; InterPr 99.29
KOG3832319 consensus Predicted amino acid transporter [Genera 99.25
TIGR00907482 2A0304 amino acid permease (GABA permease). 99.23
KOG1286554 consensus Amino acid transporters [Amino acid tran 99.23
TIGR00910507 2A0307_GadC glutamate:gamma-aminobutyrate antiport 99.21
TIGR03813474 put_Glu_GABA_T putative glutamate/gamma-aminobutyr 99.19
PF00324478 AA_permease: Amino acid permease; InterPro: IPR004 98.83
PRK11375484 allantoin permease; Provisional 98.73
KOG1289550 consensus Amino acid transporters [Amino acid tran 98.7
TIGR00800442 ncs1 NCS1 nucleoside transporter family. The NCS1 98.59
PRK12488549 acetate permease; Provisional 98.43
TIGR02119471 panF sodium/pantothenate symporter. Pantothenate ( 98.37
COG3949349 Uncharacterized membrane protein [Function unknown 98.35
PRK09442483 panF sodium/panthothenate symporter; Provisional 98.34
COG1457442 CodB Purine-cytosine permease and related proteins 98.28
TIGR00796378 livcs branched-chain amino acid uptake carrier. tr 98.23
TIGR02711549 symport_actP cation/acetate symporter ActP. Member 98.21
TIGR02358386 thia_cytX probable hydroxymethylpyrimidine transpo 98.21
COG0591493 PutP Na+/proline symporter [Amino acid transport a 98.2
TIGR00813407 sss transporter, SSS family. have different number 98.14
PF00474406 SSF: Sodium:solute symporter family; InterPro: IPR 98.08
PRK09395551 actP acetate permease; Provisional 97.99
COG1914416 MntH Mn2+ and Fe2+ transporters of the NRAMP famil 97.88
TIGR03648 552 Na_symport_lg probable sodium:solute symporter, VC 97.85
PRK11017404 codB cytosine permease; Provisional 97.85
PRK10484523 putative transporter; Provisional 97.79
PRK00701439 manganese transport protein MntH; Reviewed 97.68
PRK15419502 proline:sodium symporter PutP; Provisional 97.68
COG1953497 FUI1 Cytosine/uracil/thiamine/allantoin permeases 97.66
TIGR02121487 Na_Pro_sym sodium/proline symporter. This family c 97.66
KOG1288 945 consensus Amino acid transporters [Amino acid tran 97.51
PF02133440 Transp_cyt_pur: Permease for cytosine/purines, ura 97.48
TIGR00835425 agcS amino acid carrier protein. Members of the AG 97.42
PF02554376 CstA: Carbon starvation protein CstA; InterPro: IP 97.32
KOG2082 1075 consensus K+/Cl- cotransporter KCC1 and related tr 97.25
PF01566358 Nramp: Natural resistance-associated macrophage pr 97.18
COG0733439 Na+-dependent transporters of the SNF family [Gene 96.97
PRK15015 701 carbon starvation protein A; Provisional 96.72
COG4147529 DhlC Predicted symporter [General function predict 96.7
COG1966 575 CstA Carbon starvation protein, predicted membrane 96.26
KOG2083 643 consensus Na+/K+ symporter [Inorganic ion transpor 95.8
PF00209523 SNF: Sodium:neurotransmitter symporter family; Int 94.88
KOG2466572 consensus Uridine permease/thiamine transporter/al 94.38
PF01235416 Na_Ala_symp: Sodium:alanine symporter family; Inte 93.31
KOG3659 629 consensus Sodium-neurotransmitter symporter [Signa 93.2
TIGR00796378 livcs branched-chain amino acid uptake carrier. tr 91.75
TIGR01197390 nramp NRAMP (natural resistance-associated macroph 89.36
KOG2349 585 consensus Na+:iodide/myo-inositol/multivitamin sym 87.93
COG4145473 PanF Na+/panthothenate symporter [Coenzyme metabol 87.1
PF05525427 Branch_AA_trans: Branched-chain amino acid transpo 86.49
KOG1291503 consensus Mn2+ and Fe2+ transporters of the NRAMP 84.39
PRK10263 1355 DNA translocase FtsK; Provisional 83.11
>PTZ00206 amino acid transporter; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.4e-56  Score=454.45  Aligned_cols=403  Identities=20%  Similarity=0.311  Sum_probs=318.3

Q ss_pred             CCCchHHHHHHHHHHhHhhhhchHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHhcCCchhH
Q 011265           73 EGSGVAGAVFNLTTTVIGAGIMALPAAMKVLGLAVGFVLIIFMGILSEVSVELLVRFSVLCKATSYGEVVQYALGRPAKI  152 (490)
Q Consensus        73 ~~~s~~~~~~~l~~~~iG~GiL~lP~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~y~~l~~~~~G~~~~~  152 (490)
                      .++|..++.+|++|+++|+|+|++|+||+++||++|++++++++.++.|+.+++.+++++.+.++|+|++++++||++++
T Consensus        58 ~~gg~~~s~fnL~~~~iGaGILsLP~Af~~~G~v~giillil~a~ls~ys~~lL~~~~~~~~~~sY~~la~~~~G~~g~~  137 (467)
T PTZ00206         58 PPGGIAASAFNIASSTVGAGIVGLPSAANSSGLVMAMIYLIIITAMTIFSIYALGVAADKTNIRTYEGVARVLLGPWGSY  137 (467)
T ss_pred             CCCcHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHhCHHHHH
Confidence            47799999999999999999999999999999999999999999999999999999999888999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcccccccccccccchhhccCcccchhHHHHHHHHHHHHhccccccchhhhhhhhHHHHH
Q 011265          153 LSEICIILNNAGVLVVYLIIVGDVMSGSLHHTGVFDQWLGKGMWDHRKLLILIVLVVFLAPLCALDRIESLSMSSAASVA  232 (490)
Q Consensus       153 ~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s~~~~~  232 (490)
                      ++++.+.+.++|+|++|+++++|.++..+...+. +++.+ ..+..|.+ +.++.+++++|++++|+++.++++|.+++.
T Consensus       138 ~v~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~~-~~~~~-~~~~~r~~-~~~i~~~i~lPLs~~r~i~~L~~~S~i~~~  214 (467)
T PTZ00206        138 YVAATRAFHGFSACVAYVISVGDILSATLKGTNA-PDFLK-QKSGNRLL-TSLMWLCFMLPLVIPRHIDSLRYVSTIAVS  214 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCc-cchhh-hccCcEEe-eeehhhhHhhhcccccchHHHHHHHHHHHH
Confidence            9999999999999999999999998875543221 11111 11122322 223444678999999999999999999985


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCCCCCC----CCCCCchhhhhHHhhhhhhhhhhhhhcchHHHHHhcccCCccchhHHH
Q 011265          233 LAVVFVVVCFFIAFIKLVEGKLDPPRMS----PDFGSKKAILDLLVVIPIMTNAYVCHFNVQPIYNELEGRTPQKMNHVG  308 (490)
Q Consensus       233 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~----p~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~  308 (490)
                      +.+..++.+++....+...+..++....    ++........+++.++++++|||.||.+.|++++|||||+++|+.++.
T Consensus       215 ~i~~~vi~ivi~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~algi~~faF~~h~~~~~i~~~M~~~t~~~~~~v~  294 (467)
T PTZ00206        215 FMVYLVIVIVVHSCMNGLPENIKNVSVGKDDNAEIILFNSGNRAIEGLGVFIFAYVFQITAYEVYMDMTNRSVGKFVLAS  294 (467)
T ss_pred             HHHHHHhhhhhhhhcccCcccccccccCCCCCCceEEecCchHHHhhhhHHHhhhhhhhhhHHHHHhhcccchhHHHHHH
Confidence            4443333332222221111111111100    011011112357789999999999999999999999999888999999


Q ss_pred             HHHHHHHHHHHHHHHhHHHhhcCCCCchhhhcCCccccCcccchHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhccC
Q 011265          309 RLTTILCIVVYSSTAISGYLLFGKDTESDVLTNFDKDLGIGYSTALNYIVRVGYIFHLILVFPVVHFSLRQTVDALFFEG  388 (490)
Q Consensus       309 ~~~~~~~~~~Y~~~g~~gy~~fG~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~~~~~~~~~~~~  388 (490)
                      ..++.+++++|.++|++||+.||++++++++.|+++.+     +....+.++++.+.++++||++.+|+|+.+++.+..+
T Consensus       295 ~~s~~i~~~lY~~~G~~GYl~fG~~v~~~Illn~~p~~-----~~~~~v~~~~~~~~v~~sypL~~~p~r~~i~~~~~~~  369 (467)
T PTZ00206        295 TIAMGMCFTMYVLTAFFGYMDFGRNVTGSVLLMYDPVN-----EPAIMVGFVGVLVKLFVSYALLGMACRNALYDVIGWD  369 (467)
T ss_pred             HHHHHHHHHHHHHHHHhhhhccccccchHHHHhCCCCC-----CchhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHhCCC
Confidence            99999999999999999999999999999999995321     4566788888999999999999999999999886433


Q ss_pred             CCCccccchhhHHHHHHHHHHHHHHHhhcCchhHHHHHhhhhhhhhHHHhhhHHHHHHhhcC-CCCCChhhHHHHHHHHH
Q 011265          389 SAPLLESRKRSLALTVVLLVLIYFGSTMIPSIWTAFKFTGATTAVSLGFIFPPLVALRLRKE-GPGLSLGEKFLSGLMLV  467 (490)
Q Consensus       389 ~~~~~~~~~~~~~~~~~~~~~~~~ia~~~p~~~~i~~l~Ga~~~~~~~~ilP~~~~~~~~~~-~~~~~~~~~~~~~~~~~  467 (490)
                      .++  ..++++...+..+++.++++|+++|+++.+++++||++++.++|++|+++|++.... .+...+++++.++++++
T Consensus       370 ~~~--~~~~~~~~~~~~l~~~~l~iAi~vP~l~~vl~lvGa~~~~~l~fi~P~lf~l~~~~~~~~~~~~~~~~~~~~lli  447 (467)
T PTZ00206        370 ARK--VAFWKHCIAVVTLSVVMLLCGLFIPKINTVLGFAGSISGGLLGFILPALLFMYSGGFTWQKVGPFYYISTYVVLI  447 (467)
T ss_pred             ccc--CchhhHHHHHHHHHHHHHHHHhccCCHHHhhhhhhHHHHHHHHHHHHHHHHHhcCCccHHhhchHHHHHHHHHHH
Confidence            322  123344334555666788999999999999999999999999999999999984211 11134455688999999


Q ss_pred             HHHHHHHHHHHHHHHhhc
Q 011265          468 LAIVVSFVGVIGNIYSLE  485 (490)
Q Consensus       468 ~g~~~~v~g~~~~i~~ii  485 (490)
                      +|++..+.|||+++++.+
T Consensus       448 ~Gv~~~v~Gt~~si~~~~  465 (467)
T PTZ00206        448 TGVIAIVFGTGATIWGVT  465 (467)
T ss_pred             HHhheEEecchhHhhHHh
Confidence            999999999999999876

>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR) Back     alignment and domain information
>PLN03074 auxin influx permease; Provisional Back     alignment and domain information
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism] Back     alignment and domain information
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>PRK10483 tryptophan permease; Provisional Back     alignment and domain information
>PRK15132 tyrosine transporter TyrP; Provisional Back     alignment and domain information
>TIGR00837 araaP aromatic amino acid transport protein Back     alignment and domain information
>PRK09664 tryptophan permease TnaB; Provisional Back     alignment and domain information
>PRK13629 threonine/serine transporter TdcC; Provisional Back     alignment and domain information
>TIGR00814 stp serine transporter Back     alignment and domain information
>PRK10655 potE putrescine transporter; Provisional Back     alignment and domain information
>PRK10249 phenylalanine transporter; Provisional Back     alignment and domain information
>PRK15049 L-asparagine permease; Provisional Back     alignment and domain information
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family Back     alignment and domain information
>PRK10644 arginine:agmatin antiporter; Provisional Back     alignment and domain information
>PRK10435 cadB lysine/cadaverine antiporter; Provisional Back     alignment and domain information
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter Back     alignment and domain information
>PRK11049 D-alanine/D-serine/glycine permease; Provisional Back     alignment and domain information
>TIGR00909 2A0306 amino acid transporter Back     alignment and domain information
>TIGR00930 2a30 K-Cl cotransporter Back     alignment and domain information
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PRK11387 S-methylmethionine transporter; Provisional Back     alignment and domain information
>PRK11021 putative transporter; Provisional Back     alignment and domain information
>TIGR00911 2A0308 L-type amino acid transporter Back     alignment and domain information
>PRK10746 putative transport protein YifK; Provisional Back     alignment and domain information
>TIGR01773 GABAperm gamma-aminobutyrate permease Back     alignment and domain information
>PRK10238 aromatic amino acid transporter; Provisional Back     alignment and domain information
>TIGR00913 2A0310 amino acid permease (yeast) Back     alignment and domain information
>TIGR00912 2A0309 spore germination protein (amino acid permease) Back     alignment and domain information
>PRK10836 lysine transporter; Provisional Back     alignment and domain information
>PRK10580 proY putative proline-specific permease; Provisional Back     alignment and domain information
>TIGR00908 2A0305 ethanolamine permease Back     alignment and domain information
>TIGR00906 2A0303 cationic amino acid transport permease Back     alignment and domain information
>PRK11357 frlA putative fructoselysine transporter; Provisional Back     alignment and domain information
>PRK10197 gamma-aminobutyrate transporter; Provisional Back     alignment and domain information
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A Back     alignment and domain information
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism] Back     alignment and domain information
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR03428 ureacarb_perm permease, urea carboxylase system Back     alignment and domain information
>PRK15238 inner membrane transporter YjeM; Provisional Back     alignment and domain information
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>KOG3832 consensus Predicted amino acid transporter [General function prediction only] Back     alignment and domain information
>TIGR00907 2A0304 amino acid permease (GABA permease) Back     alignment and domain information
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter Back     alignment and domain information
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter Back     alignment and domain information
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>PRK11375 allantoin permease; Provisional Back     alignment and domain information
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00800 ncs1 NCS1 nucleoside transporter family Back     alignment and domain information
>PRK12488 acetate permease; Provisional Back     alignment and domain information
>TIGR02119 panF sodium/pantothenate symporter Back     alignment and domain information
>COG3949 Uncharacterized membrane protein [Function unknown] Back     alignment and domain information
>PRK09442 panF sodium/panthothenate symporter; Provisional Back     alignment and domain information
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism] Back     alignment and domain information
>TIGR00796 livcs branched-chain amino acid uptake carrier Back     alignment and domain information
>TIGR02711 symport_actP cation/acetate symporter ActP Back     alignment and domain information
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX Back     alignment and domain information
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only] Back     alignment and domain information
>TIGR00813 sss transporter, SSS family Back     alignment and domain information
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells Back     alignment and domain information
>PRK09395 actP acetate permease; Provisional Back     alignment and domain information
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily Back     alignment and domain information
>PRK11017 codB cytosine permease; Provisional Back     alignment and domain information
>PRK10484 putative transporter; Provisional Back     alignment and domain information
>PRK00701 manganese transport protein MntH; Reviewed Back     alignment and domain information
>PRK15419 proline:sodium symporter PutP; Provisional Back     alignment and domain information
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism] Back     alignment and domain information
>TIGR02121 Na_Pro_sym sodium/proline symporter Back     alignment and domain information
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines Back     alignment and domain information
>TIGR00835 agcS amino acid carrier protein Back     alignment and domain information
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex Back     alignment and domain information
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2 Back     alignment and domain information
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only] Back     alignment and domain information
>PRK15015 carbon starvation protein A; Provisional Back     alignment and domain information
>COG4147 DhlC Predicted symporter [General function prediction only] Back     alignment and domain information
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses Back     alignment and domain information
>KOG2466 consensus Uridine permease/thiamine transporter/allantoin transport [Nucleotide transport and metabolism; Coenzyme transport and metabolism] Back     alignment and domain information
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups Back     alignment and domain information
>KOG3659 consensus Sodium-neurotransmitter symporter [Signal transduction mechanisms] Back     alignment and domain information
>TIGR00796 livcs branched-chain amino acid uptake carrier Back     alignment and domain information
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters Back     alignment and domain information
>KOG2349 consensus Na+:iodide/myo-inositol/multivitamin symporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism] Back     alignment and domain information
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)) Back     alignment and domain information
>KOG1291 consensus Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK10263 DNA translocase FtsK; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query490
3l1l_A445 Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC 99.77
3gia_A444 Uncharacterized protein MJ0609; membrane protein, 99.65
4djk_A511 Probable glutamate/gamma-aminobutyrate antiporter; 99.49
2jln_A501 MHP1; hydantoin, transporter, membrane protein, nu 98.84
3dh4_A 530 Sodium/glucose cotransporter; membrane protein, sy 98.1
2xq2_A 593 Sodium/glucose cotransporter; transport protein, i 97.68
2a65_A519 Leutaa, Na(+):neurotransmitter symporter (SNF fami 94.38
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A Back     alignment and structure
Probab=99.77  E-value=3.3e-16  Score=158.85  Aligned_cols=358  Identities=11%  Similarity=0.026  Sum_probs=211.9

Q ss_pred             CCCCCchHHHHHHHHHHhHhhhhchHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCCCHHHHHHHhcCCc
Q 011265           71 SNEGSGVAGAVFNLTTTVIGAGIMALPAAMKVLGLAVGFVLIIFMGILSEVSVELLVRFSVLC-KATSYGEVVQYALGRP  149 (490)
Q Consensus        71 ~~~~~s~~~~~~~l~~~~iG~GiL~lP~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~-~~~~y~~l~~~~~G~~  149 (490)
                      ++|+.|.++.++..+++++|+|++.+|....+.|. .+++.+++.+++.......+.|...+. +.....+.+++.+||+
T Consensus         6 ~~r~l~~~~~~~l~ig~~iG~Gif~~~~~~~~~G~-~~~~~~li~~~~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~G~~   84 (445)
T 3l1l_A            6 DAHKVGLIPVTLMVSGAIMGSGVFLLPANLASTGG-IAIYGWLVTIIGALGLSMVYAKMSFLDPSPGGSYAYARRCFGPF   84 (445)
T ss_dssp             -CCCBCHHHHHHHHHHHHCSSHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCTTTHHHHHHHHSCHH
T ss_pred             CCCcccHHHHHHHHHHhHHhhhHHhhHHHHHHhhh-HHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCchhhHHhHcCCh
Confidence            45689999999999999999999999988888886 478888888888988888899987654 4457888889999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhhcccccccccccccchhhccCcccchhHHHHHHHHHHHHhccccccchhhhhhhhHH
Q 011265          150 AKILSEICIILNNAGVLVVYLIIVGDVMSGSLHHTGVFDQWLGKGMWDHRKLLILIVLVVFLAPLCALDRIESLSMSSAA  229 (490)
Q Consensus       150 ~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~l~~l~~~s~~  229 (490)
                      ..++..+...+........+....++++....+..       +.+ +  ....+ ...+++++-....+..+....++.+
T Consensus        85 ~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~-~--~~~~~-~~~~~~~~~~in~~g~~~~~~~~~~  153 (445)
T 3l1l_A           85 LGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPIL-------KDP-W--VLTIT-CVVVLWIFVLLNIVGPKMITRVQAV  153 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGGG-------GSH-H--HHHHH-HHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccc-------ccc-H--HHHHH-HHHHHHHHHHHHHhchHHHHHHHHH
Confidence            99999999988887777788888888876533211       011 1  11111 1111222233334445555555544


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCC--CchhhhhHHhhhhhhhhhhhhhcchHHHHHhcccCCccchhHH
Q 011265          230 SVALAVVFVVVCFFIAFIKLVEGKLDPPRMSPDFG--SKKAILDLLVVIPIMTNAYVCHFNVQPIYNELEGRTPQKMNHV  307 (490)
Q Consensus       230 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~--~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~  307 (490)
                      .....++.+++.++   ......+  +....+.+.  ...++.++..++....|+|.+........+|+|||+ |+.+|+
T Consensus       154 ~~~~~i~~~~~~~i---~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p~-r~ip~a  227 (445)
T 3l1l_A          154 ATVLALIPIVGIAV---FGWFWFR--GETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPK-RNVPIA  227 (445)
T ss_dssp             HHHHHHHHHHHHHH---TTSTTCC--CCCCCCC-----------HHHHHHHHHHTTTTTTHHHHGGGGBSSHH-HHHHHH
T ss_pred             HHHHHHHHHHHHHH---HHHHHhC--hhhcccccCccCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCcc-ccccHH
Confidence            44322222222111   1111111  111111111  112356778899999999999999999999999997 789999


Q ss_pred             HHHHHHHHHHHHHHHHhHHHhhcCCCCc----hhhhcCCccccCcccchHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHH
Q 011265          308 GRLTTILCIVVYSSTAISGYLLFGKDTE----SDVLTNFDKDLGIGYSTALNYIVRVGYIFHLILVFPVVHFSLRQTVDA  383 (490)
Q Consensus       308 ~~~~~~~~~~~Y~~~g~~gy~~fG~~~~----~~il~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~~~~~~~  383 (490)
                      +..+..++.++|.+..+......+.+..    .+...-+...    .+++...+..+...+..+.+.--..+...+.+..
T Consensus       228 ~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~~  303 (445)
T 3l1l_A          228 TIGGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMA----LGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKA  303 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSCTTTSCSTTCTHHHHHHHH----HCTTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCHHHHhccCcHHHHHHHHH----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999998887776664321    1111111110    0023334444445555555444444444444443


Q ss_pred             hhccCCCC------ccccchhhHHHHHHHHHHHHHHHhhc----CchhHHHHHhhhhhhhhHHHhhhHHHHHHhhcCCC
Q 011265          384 LFFEGSAP------LLESRKRSLALTVVLLVLIYFGSTMI----PSIWTAFKFTGATTAVSLGFIFPPLVALRLRKEGP  452 (490)
Q Consensus       384 ~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~ia~~~----p~~~~i~~l~Ga~~~~~~~~ilP~~~~~~~~~~~~  452 (490)
                      .-..+.-+      .+.+...+......++...+.+....    ..++.+.++.+  .+..+.|.++++.+++++++++
T Consensus       304 ~a~dg~lP~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~y~~~~~~~~~~r~~~~  380 (445)
T 3l1l_A          304 AADDGLFPPIFARVNKAGTPVAGLIIVGILMTIFQLSSISPNATKEFGLVSSVSV--IFTLVPYLYTCAALLLLGHGHF  380 (445)
T ss_dssp             HHHTTSSCGGGGCCCTTCCCHHHHHHHHHHHHHHHHSTTSHHHHCCCHHHHHHHH--HHHHHHHHHHHHHHHHHHSSSS
T ss_pred             HHhCCCCcHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCc
Confidence            32111111      00111122211111111111111112    34666767655  4557889999999999887654
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C Back     alignment and structure
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A Back     alignment and structure
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A Back     alignment and structure
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus} Back     alignment and structure
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A Back     alignment and structure
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ... Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query490
d2a65a1509 Na(+):neurotransmitter symporter homologue LeuT {A 96.73
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: SNF-like
superfamily: SNF-like
family: SNF-like
domain: Na(+):neurotransmitter symporter homologue LeuT
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.73  E-value=0.28  Score=47.21  Aligned_cols=101  Identities=11%  Similarity=0.089  Sum_probs=66.3

Q ss_pred             CchHHHHHHHHHHhHhhhh-chHHHHH-HHhC---HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHhcCCc
Q 011265           75 SGVAGAVFNLTTTVIGAGI-MALPAAM-KVLG---LAVGFVLIIFMGILSEVSVELLVRFSVLCKATSYGEVVQYALGRP  149 (490)
Q Consensus        75 ~s~~~~~~~l~~~~iG~Gi-L~lP~af-~~~G---~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~y~~l~~~~~G~~  149 (490)
                      .|..+-++..++..+|.|= .=.|+-. +++|   +++=++++++.+.=-.+--..+.+..++.+...+..++....+.+
T Consensus         5 ~s~~~fila~~g~avGlGNiWrFPyl~~~nGGgaFlipY~~~l~l~gvPll~lE~~lGq~~~~g~i~~~~~i~~~~~~~~   84 (509)
T d2a65a1           5 ATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGAQGHGTTPAIFYLLWRNR   84 (509)
T ss_dssp             SCHHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTTCCSHHHHHHHHSCSH
T ss_pred             CChHHHHHHHHHHHhcccHHHhhhHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHhccCc
Confidence            4778889999999999975 5589664 5666   334444445555555555556667777788889999888877654


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhhcc
Q 011265          150 AKILSEICIILNNAGVLVVYLIIVGD  175 (490)
Q Consensus       150 ~~~~~~~~~~~~~~g~~~~y~i~~~~  175 (490)
                      ....+.....+..+..++-|.++.+-
T Consensus        85 ~~~giG~~~~~~~~~i~~yy~vi~~w  110 (509)
T d2a65a1          85 FAKILGVFGLWIPLVVAIYYVYIESW  110 (509)
T ss_dssp             HHHHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHhHHHHHHHHHHHHHHHHHHHH
Confidence            44445555555555555555555443