Citrus Sinensis ID: 011271

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------49
MDAKDILGIPKTQLPTTQEKKSRPQKEPQRKPDGISREVYALTGGLAPLMPSIDVSQLKKRPPSDEKITWQWLPFTNSARKDNLQLYHWVGFGNFWKCFHELGKRSFLMWGVVYNIFFNFFGVSHAFQVRVVNGVPPTGDYSFAKYNKSVDVVKYTDEEYEKYLTDPMWTKEETDQLFELCERFDLRFIVIADRFPSSRTVEELKDRYYGVSRAILIARAPSPTDVSGHPLVKDPYNVSQEVERKRALSMVLSQTKHQERKDAEVLAEAKRITDSRMASRAAEEPEMPVASHVGSESADRAVVLGDTVSPSSNIQLPSATVVPSTSIIADSASTLASLRMLRVYLRTYALEQMVQAASSSAGLRTIKRVEQALQELGVNLKPKVPTKAVCAEHLELRKEILTLLNLQKQLQYKEAEGSSYRDGSYIDMPGTPKRSQRAGDQDRTFVPESINFGGERVGKRDQKRKGPGRLSEAPSSPAHKRPRKKASDL
ccHHHHcccccccccccccccccccccccccccccHHHHHHHHccccccccccccccccccccccccccEEEEcccccccccccEEEccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccHHHHHHHcccccccHHHHHHHHHHHHHccccEEEEEccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHcccccccccccccccccccccccccccccccHHHHHHHcccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
ccHHHHHcccccccccccccccccccccccccccHHHHHHHHHccccccccccccccccccccccccccEEEEcccccccccccEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccEEEcccccHHHHHHHHccccccHHHHHHHHHHHHHcccEEEEEEccccccccHHHHHHHHHHHHHHHHHHcccccHHHcccccEEccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHcccccccccHcHHcccccccccccccccccccccccccccccEEccHHHHHHHHHcccccHcHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
mdakdilgipktqlpttqekksrpqkepqrkpdgisREVYALTgglaplmpsidvsqlkkrppsdekitwqwlpftnsarkdnlQLYHWVGFGNFWKCFHELGKRSFLMWGVVYNIFFNFFGVSHAFQVRVvngvpptgdysfakynksvdvVKYTDEEYEkyltdpmwtkeETDQLFELCERFDLRFIViadrfpssrtvEELKDRYYGVSRAILiarapsptdvsghplvkdpynvsQEVERKRALSMVLSQTKHQERKDAEVLAEAKRITdsrmasraaeepempvashvgsesadRAVVlgdtvspssniqlpsatvvpstsiiADSASTLASLRMLRVYLRTYALEQMVQAASSSAGLRTIKRVEQALQELgvnlkpkvptkaVCAEHLELRKEILTLLNLQKQLQYkeaegssyrdgsyidmpgtpkrsqragdqdrtfvpesinfggervgkrdqkrkgpgrlseapsspahkrprkkasdl
mdakdilgipktqlpttqekksrpqkepqrkpdgisREVYALTGGLAPLMPSIDVSQLKKRPPSDEKITWQWLPFTNSARKDNLQLYHWVGFGNFWKCFHELGKRSFLMWGVVYNIFFNFFGVSHAFQVRVVNGVPptgdysfakynksvdvvKYTDEEYekyltdpmwtkEETDQLFELCERFDLRFIViadrfpssrtveelKDRYYGVSRAILIArapsptdvsghplvKDPYNVSQEVERKRALSMvlsqtkhqerkdaevlaeakritdsrmasraaeepempvashvgseSADRAVVLGDTvspssniqlpsatvvpstsiiADSASTLASLRMLRVYLRTYALEQMVQAASSSAGLRTIKRVEQALQelgvnlkpkvpTKAVCAEHLELRKEILTLLNLQKQLQYKeaegssyrdgsyidmpgtpkrsqragdqdrtfvpesinfggervgkrdqkrkgpgrlseapsspahkrprkkasdl
MDAKDILGIPKTQLPTTQEKKSRPQKEPQRKPDGISREVYALTGGLAPLMPSIDVSQLKKRPPSDEKITWQWLPFTNSARKDNLQLYHWVGFGNFWKCFHELGKRSFLMWGVVYNIFFNFFGVSHAFQVRVVNGVPPTGDYSFAKYNKSVDVVKYTDEEYEKYLTDPMWTKEETDQLFELCERFDLRFIVIADRFPSSRTVEELKDRYYGVSRAILIARAPSPTDVSGHPLVKDPYNVSQEVERKRALSMVLSQTKHQERKDAEVLAEAKRITDSRMASRAAEEPEMPVASHVGSESADRAVVLGDTVSPSSNIQLPSATVVPSTSIIADSASTLASLRMLRVYLRTYALEQMVQAASSSAGLRTIKRVEQALQELGVNLKPKVPTKAVCAEHLELRKEILTLLNLQKQLQYKEAEGSSYRDGSYIDMPGTPKRSQRAGDQDRTFVPESINFGGERVGKRDQKRKGPGRLSEAPSSPAHKRPRKKASDL
**************************************VYALTGGLAPL*****************KITWQWLPFTNSARKDNLQLYHWVGFGNFWKCFHELGKRSFLMWGVVYNIFFNFFGVSHAFQVRVVNGVPPTGDYSFAKYNKSVDVVKYTDEEYEKYLTDPMWTKEETDQLFELCERFDLRFIVIADRFPSSRTVEELKDRYYGVSRAILIAR*****************************************************************************************************VVPSTSIIADSASTLASLRMLRVYLRTYALEQMVQAASSSAGLRTIKRVEQALQELGVNLKPKVPTKAVCAEHLELRKEILTLLNLQKQLQY*****************************************************************************
MDAKDIL******************************EVYALTGGLAPLM*******************WQWLPFTNSARKDNLQLYHWVGF***********************************************************V*KYTDEEYEKYLTDPMWTKEETDQLFELCERFDLRFIVIADRFPSSRTVEELKDRYYGVSRAI******************DPYNVSQEVERKRALSMVL*******RKDAEVLAEAK***************************************************************************************************EQALQELGVNLKPKVPTKAVCAEHLELRKEILTLLNLQKQLQYKEAEGSS**********************************************************************
MDAKDILGIPKTQL*******************GISREVYALTGGLAPLMPSIDVS*********EKITWQWLPFTNSARKDNLQLYHWVGFGNFWKCFHELGKRSFLMWGVVYNIFFNFFGVSHAFQVRVVNGVPPTGDYSFAKYNKSVDVVKYTDEEYEKYLTDPMWTKEETDQLFELCERFDLRFIVIADRFPSSRTVEELKDRYYGVSRAILIARAPSPTDVSGHPLVKDPYNVSQEVERKRALSMV************EVLAEAKRIT************************ADRAVVLGDTVSPSSNIQLPSATVVPSTSIIADSASTLASLRMLRVYLRTYALEQMVQAASSSAGLRTIKRVEQALQELGVNLKPKVPTKAVCAEHLELRKEILTLLNLQKQLQYKEAEGSSYRDGSYIDMPG***********DRTFVPESINFGGER*********************************
*D***ILGIP*********************PDGISREVYALTGGLAPLMPSIDVSQL*****SDEKITWQWLPFTNSARKDNLQLYHWVGFG*********************************************GDYSFAKYNKSVDVVKYTDEEYEKYLTDPMWTKEETDQLFELCERFDLRFIVIADRFPSSRTVEELKDRYYGVSRAILIARAPSPTDVSGHPLVKDPYNVSQEVERKRALSMVLSQTKHQERKDAEVLAEAKRITDSRMASRAAEEPEMPVASH***********************************IA***STLASLRMLRVYLRTYALEQMVQAASSSAGLRTIKRVEQALQELGVNLKPKVPTKAVCAEHLELRKEILTLLNLQKQLQYKEAEGSSYRD*******************************************************************
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MDAKDILGIPKTQLPTTQEKKSRPQKEPQRKPDGISREVYALTGGLAPLMPSIDVSQLKKRPPSDEKITWQWLPFTNSARKDNLQLYHWVGFGNFWKCFHELGKRSFLMWGVVYNIFFNFFGVSHAFQVRVVNGVPPTGDYSFAKYNKSVDVVKYTDEEYEKYLTDPMWTKEETDQLFELCERFDLRFIVIADRFPSSRTVEELKDRYYGVSRAILIARAPSPTDVSGHPLVKDPYNVSQEVERKRALSMVLSQTKHQERKDAEVLAEAKRITDSRMASRAAEEPEMPVASHVGSESADRAVVLGDTVSPSSNIQLPSATVVPSTSIIADSASTLASLRMLRVYLRTYALEQMVQAASSSAGLRTIKRVEQALQELGVNLKPKVPTKAVCAEHLELRKEILTLLNLQKQLQYKEAEGSSYRDGSYIDMPGTPKRSQRAGDQDRTFVPESINFGGERVGKRDQKRKGPGRLSEAPSSPAHKRPRKKASDL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query489 2.2.26 [Sep-21-2011]
O14308437 SWR1-complex protein 4 OS yes no 0.468 0.524 0.348 1e-34
Q9NPF5467 DNA methyltransferase 1-a yes no 0.640 0.670 0.306 2e-33
Q9JI44468 DNA methyltransferase 1-a yes no 0.640 0.668 0.306 3e-33
P0CO96463 SWR1-complex protein 4 OS yes no 0.488 0.516 0.296 1e-26
P0CO97463 SWR1-complex protein 4 OS N/A no 0.488 0.516 0.296 1e-26
Q4WNY4588 SWR1-complex protein 4 OS yes no 0.515 0.428 0.315 4e-26
Q4PG15615 SWR1-complex protein 4 OS N/A no 0.498 0.396 0.283 6e-23
Q870Q1 733 SWR1-complex protein 4 OS N/A no 0.503 0.335 0.315 2e-19
Q5B4T5586 SWR1-complex protein 4 OS yes no 0.486 0.406 0.298 4e-19
Q4HY90 624 SWR1-complex protein 4 OS yes no 0.437 0.342 0.307 3e-17
>sp|O14308|SWC4_SCHPO SWR1-complex protein 4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=swc4 PE=3 SV=2 Back     alignment and function desciption
 Score =  147 bits (372), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 99/284 (34%), Positives = 143/284 (50%), Gaps = 55/284 (19%)

Query: 2   DAKDILGIPKTQLPTTQEKKSRPQKEPQRKPDGISREVYALTG-GLAPLMPSIDVSQLKK 60
           D +D+  +P  ++   Q+ K+      +R+P+GISRE+Y+L G   APL  +I   + K+
Sbjct: 5   DIRDVFELPPPEIGNKQKSKT----PTERRPEGISRELYSLLGENSAPL--AIYQKKFKE 58

Query: 61  RPPSDEKI-TWQWLPFTNSARKDNLQLYHWVGFGNFWKCFHELGKRSFLMWGVVYNIFFN 119
           +P    K   W   PF+ S+RKD+  L+HWV                             
Sbjct: 59  KPKVSHKAKNWVRQPFSISSRKDDFTLHHWV----------------------------- 89

Query: 120 FFGVSHAFQVRVVNGVPPTGDYSFAKYNKSVDVVKYTDEEYEKYLTDPMWTKEETDQLFE 179
                      + + V     Y F K+N  + ++ YTDEEY+ YL D  W K+ETD LF 
Sbjct: 90  -----------LKSEVDSEASYKFEKFNVPLFIIDYTDEEYQNYLKDEDWNKDETDYLFR 138

Query: 180 LCERFDLRFIVIADRFPSS-----RTVEELKDRYYGVSRAILIARAP--SPTDVSGHPLV 232
           LC+ +DLRF VIADR+ +      RT+E+LKDR+Y VSR IL+AR P  S T      L 
Sbjct: 139 LCKDYDLRFFVIADRYDNEKYKKHRTLEDLKDRFYSVSRKILLARNPINSMTAAQSSLLN 198

Query: 233 KDPYNVSQEVERKRALSMVLSQTKHQERKDAEVLAEAKRITDSR 276
              YN  QEV RK+ L  + S+T  +  ++  +  E KRI  S+
Sbjct: 199 TMEYNKEQEVIRKKYLIGLASRTPEEVAEEEALFIELKRIETSQ 242
Component of the SWR1 complex which mediates the ATP-dependent exchange of histone H2A for the H2A variant HZT1 leading to transcriptional regulation of selected genes by chromatin remodeling. Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of selected genes principally by acetylation of nucleosomal histone H4 and H2A. The NuA4 complex is also involved in DNA repair.
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)
>sp|Q9NPF5|DMAP1_HUMAN DNA methyltransferase 1-associated protein 1 OS=Homo sapiens GN=DMAP1 PE=1 SV=1 Back     alignment and function description
>sp|Q9JI44|DMAP1_MOUSE DNA methyltransferase 1-associated protein 1 OS=Mus musculus GN=Dmap1 PE=1 SV=1 Back     alignment and function description
>sp|P0CO96|SWC4_CRYNJ SWR1-complex protein 4 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=SWC4 PE=3 SV=1 Back     alignment and function description
>sp|P0CO97|SWC4_CRYNB SWR1-complex protein 4 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=SWC4 PE=3 SV=1 Back     alignment and function description
>sp|Q4WNY4|SWC4_ASPFU SWR1-complex protein 4 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=swc4 PE=3 SV=1 Back     alignment and function description
>sp|Q4PG15|SWC4_USTMA SWR1-complex protein 4 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=SWC4 PE=3 SV=1 Back     alignment and function description
>sp|Q870Q1|SWC4_NEUCR SWR1-complex protein 4 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=swc-4 PE=3 SV=2 Back     alignment and function description
>sp|Q5B4T5|SWC4_EMENI SWR1-complex protein 4 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=swc4 PE=3 SV=1 Back     alignment and function description
>sp|Q4HY90|SWC4_GIBZE SWR1-complex protein 4 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=SWC4 PE=3 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query489
224128250443 predicted protein [Populus trichocarpa] 0.903 0.997 0.761 0.0
225437641445 PREDICTED: SWR1-complex protein 4 [Vitis 0.905 0.995 0.755 0.0
255548361450 DNA methyltransferase 1-associated prote 0.907 0.986 0.760 0.0
356572817433 PREDICTED: SWR1-complex protein 4-like [ 0.883 0.997 0.712 0.0
449436397451 PREDICTED: DNA methyltransferase 1-assoc 0.918 0.995 0.718 0.0
312282479439 unnamed protein product [Thellungiella h 0.887 0.988 0.687 0.0
356505649433 PREDICTED: SWR1-complex protein 4-like [ 0.883 0.997 0.704 0.0
357511425433 SWR1-complex protein [Medicago truncatul 0.881 0.995 0.688 0.0
297824809441 myb family transcription factor [Arabido 0.891 0.988 0.678 0.0
30690620441 DNA methyltransferase 1-associated prote 0.891 0.988 0.676 0.0
>gi|224128250|ref|XP_002320280.1| predicted protein [Populus trichocarpa] gi|222861053|gb|EEE98595.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  744 bits (1922), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/490 (76%), Positives = 411/490 (83%), Gaps = 48/490 (9%)

Query: 1   MDAKDILGIPKTQLPTTQEKKSRPQKEPQRKPDGISREVYALTGGLAPLMPSIDVSQLKK 60
           MDAKDILG+PKT LP TQEKKS+P+K+ QRKPDGISREVYALTGGLAPLMPSIDVSQLK+
Sbjct: 1   MDAKDILGLPKTPLPLTQEKKSQPKKDSQRKPDGISREVYALTGGLAPLMPSIDVSQLKR 60

Query: 61  RPPSDEKITWQWLPFTNSARKDNLQLYHWVGFGNFWKCFHELGKRSFLMWGVVYNIFFNF 120
           RPPSDEKITWQWLPFT+SARKDNLQLYHWV                              
Sbjct: 61  RPPSDEKITWQWLPFTSSARKDNLQLYHWV------------------------------ 90

Query: 121 FGVSHAFQVRVVNGVPPTGDYSFAKYNKSVDVVKYTDEEYEKYLTDPMWTKEETDQLFEL 180
                    RVVNGVPPTGDYSFAKYNKSVDVVKYT+EEYEKYLTDPMWTKEETDQLF+L
Sbjct: 91  ---------RVVNGVPPTGDYSFAKYNKSVDVVKYTEEEYEKYLTDPMWTKEETDQLFDL 141

Query: 181 CERFDLRFIVIADRFPSSRTVEELKDRYYGVSRAILIARAPSPTDVSGHPLVKDPYNVSQ 240
           CERFDLRF+VIADRF SSR+VEELKDRYY VSRA+LIARAPSP DVSGHPLVK+PYN SQ
Sbjct: 142 CERFDLRFVVIADRFTSSRSVEELKDRYYNVSRAMLIARAPSPGDVSGHPLVKEPYNSSQ 201

Query: 241 EVERKRALSMVLSQTKHQERKDAEVLAEAKRITDSRMASRAAEEPEMPVASHVGSESADR 300
           E ERKRALSMVLSQTKHQERKD +VLAEAK+I +SR+ +   EE  +PVAS+V  + A+ 
Sbjct: 202 ETERKRALSMVLSQTKHQERKDTQVLAEAKKIVESRITALGTEESALPVASNVDPDIAEI 261

Query: 301 AVVLGDTVSPSSNIQLPSATVVPSTSIIADSASTLASLRMLRVYLRTYALEQMVQAASSS 360
           AV L D+ SPSSN QL SA+V PSTS +AD+ASTLASLRMLRVYLRTY LEQMVQAASSS
Sbjct: 262 AVNLDDSASPSSNAQLASASVAPSTSAMADNASTLASLRMLRVYLRTYGLEQMVQAASSS 321

Query: 361 AGLRTIKRVEQALQELGVNLKPKVPTKAVCAEHLELRKEILTLLNLQKQLQYKEAEGSSY 420
           AGLRTIKRVEQ LQ+LGV+LKPKVPTKAVC+EHLELRKEILTLLNLQKQLQYKEAEGSS+
Sbjct: 322 AGLRTIKRVEQTLQDLGVSLKPKVPTKAVCSEHLELRKEILTLLNLQKQLQYKEAEGSSF 381

Query: 421 RDGSYIDMPGTPKRSQRAGDQDRTFVPESINFGGERVGKRDQKRKGPGRLSEAPSSPAHK 480
           RDGSY D+PG+PK        DRTF+P+S++FGG+RVG+RDQKRKGPGR+SE PSSPAHK
Sbjct: 382 RDGSYTDIPGSPK--------DRTFIPDSMSFGGDRVGRRDQKRKGPGRVSENPSSPAHK 433

Query: 481 RPRK-KASDL 489
           RPRK KASDL
Sbjct: 434 RPRKLKASDL 443

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225437641|ref|XP_002278881.1| PREDICTED: SWR1-complex protein 4 [Vitis vinifera] gi|297744019|emb|CBI36989.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255548361|ref|XP_002515237.1| DNA methyltransferase 1-associated protein, putative [Ricinus communis] gi|223545717|gb|EEF47221.1| DNA methyltransferase 1-associated protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356572817|ref|XP_003554562.1| PREDICTED: SWR1-complex protein 4-like [Glycine max] Back     alignment and taxonomy information
>gi|449436397|ref|XP_004135979.1| PREDICTED: DNA methyltransferase 1-associated protein 1-like [Cucumis sativus] gi|449515241|ref|XP_004164658.1| PREDICTED: DNA methyltransferase 1-associated protein 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|312282479|dbj|BAJ34105.1| unnamed protein product [Thellungiella halophila] Back     alignment and taxonomy information
>gi|356505649|ref|XP_003521602.1| PREDICTED: SWR1-complex protein 4-like [Glycine max] Back     alignment and taxonomy information
>gi|357511425|ref|XP_003626001.1| SWR1-complex protein [Medicago truncatula] gi|355501016|gb|AES82219.1| SWR1-complex protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|297824809|ref|XP_002880287.1| myb family transcription factor [Arabidopsis lyrata subsp. lyrata] gi|297326126|gb|EFH56546.1| myb family transcription factor [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|30690620|ref|NP_850470.1| DNA methyltransferase 1-associated protein 1 [Arabidopsis thaliana] gi|17381136|gb|AAL36380.1| unknown protein [Arabidopsis thaliana] gi|20465555|gb|AAM20260.1| unknown protein [Arabidopsis thaliana] gi|225898605|dbj|BAH30433.1| hypothetical protein [Arabidopsis thaliana] gi|330255720|gb|AEC10814.1| DNA methyltransferase 1-associated protein 1 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query489
TAIR|locus:2065150441 AT2G47210 [Arabidopsis thalian 0.717 0.795 0.718 1.3e-171
POMBASE|SPAC9G1.13c437 swc4 "Swr1 complex subunit Swc 0.290 0.324 0.442 9.3e-40
UNIPROTKB|Q9NPF5467 DMAP1 "DNA methyltransferase 1 0.517 0.541 0.311 2.3e-37
UNIPROTKB|Q1LZ99468 DMAP1 "DNA methyltransferase 1 0.517 0.540 0.311 2.4e-37
UNIPROTKB|E2R9T9468 DMAP1 "Uncharacterized protein 0.517 0.540 0.311 2.4e-37
MGI|MGI:1913483468 Dmap1 "DNA methyltransferase 1 0.517 0.540 0.311 2.4e-37
RGD|1311295468 Dmap1 "DNA methyltransferase 1 0.517 0.540 0.311 2.4e-37
ZFIN|ZDB-GENE-040426-748464 dmap1 "DNA methyltransferase 1 0.580 0.612 0.297 1.6e-35
UNIPROTKB|E1C4L9331 DMAP1 "Uncharacterized protein 0.276 0.407 0.386 3.4e-34
UNIPROTKB|Q5TG39285 DMAP1 "DNA methyltransferase 1 0.261 0.449 0.401 3.6e-34
TAIR|locus:2065150 AT2G47210 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1307 (465.1 bits), Expect = 1.3e-171, Sum P(2) = 1.3e-171
 Identities = 260/362 (71%), Positives = 302/362 (83%)

Query:   129 VRVVNGVPPTGDYSFAKYNKSVDVVKYTDEEYEKYLTDPMWTKEETDQLFELCERFDLRF 188
             VRVVN VPPTGDYSFAKYNKSVD++KYTDEEYE +LTD +WTKEETDQLFE C+ FDLRF
Sbjct:    90 VRVVNDVPPTGDYSFAKYNKSVDILKYTDEEYENHLTDSVWTKEETDQLFEFCQNFDLRF 149

Query:   189 IVIADRFPSSRTVEELKDRYYGVSRAILIARAPSPTDVSGHPLVKDPYNVSQEVERKRAL 248
             +VIADRFP SRTVEELKDRYY V+RA+L ARA SP DV+ HPL+K+PY+++++ ERKRAL
Sbjct:   150 VVIADRFPVSRTVEELKDRYYSVNRALLRARAQSPADVANHPLMKEPYDITRDRERKRAL 209

Query:   249 SMVLSQTKHQERKDAEVLAEAKRITDSRMASRAAEEPEMPVASHVGSESADRAVVLGDTV 308
             SMVLSQ++HQE+KDAE+LAEAKRIT+ R+A+R AEEP++    + G + AD  VV G +V
Sbjct:   210 SMVLSQSRHQEKKDAEILAEAKRITEMRLAARRAEEPDVSANENAGLDKAD-GVVPGRSV 268

Query:   309 SPSSNIQLPSATVVPSTSIIADSASTLASLRMLRVYLRTYALEQMVQAASSSAGLRTIKR 368
             SP+SN QLP+  V PST  +AD ASTLASLRML VYLRTY LEQMVQAASS+ GLRTIKR
Sbjct:   269 SPTSNSQLPATAVAPSTLTMADYASTLASLRMLHVYLRTYGLEQMVQAASSAVGLRTIKR 328

Query:   369 VEQALQELGVNLKPKVPTKAVCAEHLELRKEILTLLNLQKQLQYKEAEGSSYRDGSYIDM 428
             VEQ LQ+LGVNLKPKVPTK VC EHLELRKEILTLLNLQKQLQYKE+EGSS+R+GSY  M
Sbjct:   329 VEQTLQDLGVNLKPKVPTKTVCDEHLELRKEILTLLNLQKQLQYKESEGSSHREGSYAAM 388

Query:   429 PGTPKRSQRAGDQDRTFVPESINFGGERVGKRDQKRKGPGRLSEAPSSPAHKRPRK-KAS 487
             P TPK        DR F P+  +FG ER  K++QKRKGPGR ++ PS PAHKRPRK KAS
Sbjct:   389 PDTPK--------DRVFAPDPFSFGAERPIKKEQKRKGPGRQADTPS-PAHKRPRKLKAS 439

Query:   488 DL 489
             DL
Sbjct:   440 DL 441
GO:0003677 "DNA binding" evidence=IEA;ISS
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS
GO:0005634 "nucleus" evidence=ISM;IEA
GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS
GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA
POMBASE|SPAC9G1.13c swc4 "Swr1 complex subunit Swc4" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
UNIPROTKB|Q9NPF5 DMAP1 "DNA methyltransferase 1-associated protein 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q1LZ99 DMAP1 "DNA methyltransferase 1 associated protein 1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2R9T9 DMAP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
MGI|MGI:1913483 Dmap1 "DNA methyltransferase 1-associated protein 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1311295 Dmap1 "DNA methyltransferase 1-associated protein 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-748 dmap1 "DNA methyltransferase 1 associated protein 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|E1C4L9 DMAP1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q5TG39 DMAP1 "DNA methyltransferase 1-associated protein 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh4_pm.C_LG_XIV000280
hypothetical protein (443 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query489
cd1165846 cd11658, SANT_DMAP1_like, SANT/myb-like domain of 5e-17
cd0016745 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA- 1e-05
smart0071749 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII 2e-05
pfam05499175 pfam05499, DMAP1, DNA methyltransferase 1-associat 6e-05
pfam0024947 pfam00249, Myb_DNA-binding, Myb-like DNA-binding d 8e-04
pfam1392159 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding do 0.001
>gnl|CDD|212556 cd11658, SANT_DMAP1_like, SANT/myb-like domain of Human Dna Methyltransferase 1 Associated Protein 1-like Back     alignment and domain information 
 Score = 74.4 bits (183), Expect = 5e-17
 Identities = 27/43 (62%), Positives = 35/43 (81%), Gaps = 2/43 (4%)

Query: 169 WTKEETDQLFELCERFDLRFIVIADRFP--SSRTVEELKDRYY 209
           WTKEETD LF+L +RFDLR+ VI DR+P    R+VE+LK++YY
Sbjct: 1   WTKEETDYLFDLVKRFDLRWNVILDRYPFQKGRSVEDLKEKYY 43

These proteins are members of the SANT/myb group. SANT is named after 'SWI3, ADA2, N-CoR and TFIIIB', several factors that share this domain. The SANT domain resembles the 3 alpha-helix bundle of the DNA-binding Myb domains and is found in a diverse set of proteins. Length = 46
>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains Back     alignment and domain information
>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains Back     alignment and domain information
>gnl|CDD|218611 pfam05499, DMAP1, DNA methyltransferase 1-associated protein 1 (DMAP1) Back     alignment and domain information
>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain Back     alignment and domain information
>gnl|CDD|206092 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 489
KOG2656445 consensus DNA methyltransferase 1-associated prote 100.0
PF05499176 DMAP1: DNA methyltransferase 1-associated protein 100.0
cd0016745 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do 97.58
PF0024948 Myb_DNA-binding: Myb-like DNA-binding domain; Inte 97.37
smart0071749 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi 97.35
PF1392160 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 97.02
PLN03212249 Transcription repressor MYB5; Provisional 96.09
PLN03091459 hypothetical protein; Provisional 96.04
PLN03212249 Transcription repressor MYB5; Provisional 81.4
>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription] Back     alignment and domain information 
Probab=100.00  E-value=2.8e-103  Score=796.02  Aligned_cols=417  Identities=40%  Similarity=0.604  Sum_probs=322.8

Q ss_pred             CchhhhhCCCCCCC-CCc-ccccCCCCCCCCCCCCCccHHHHHhhCC-CCCCCccccccccccCCCCC-CCCCceecccc
Q 011271            1 MDAKDILGIPKTQL-PTT-QEKKSRPQKEPQRKPDGISREVYALTGG-LAPLMPSIDVSQLKKRPPSD-EKITWQWLPFT   76 (489)
Q Consensus         1 ~DvrDiL~lp~~~~-~~~-~~kk~~~~~~~~krp~Gm~REv~aL~G~-~~P~~p~~~~~~~K~k~~~~-~~~~W~~~pF~   76 (489)
                      +||||||+||+.+. .+. +.+|.+++....+||+||+||||||||+ .||++|+++. .||+++..+ ++++|.|+||+
T Consensus         4 aDirDIL~l~~~t~~~~~kq~s~~rs~t~s~rrPeGm~REvyaLlg~n~pPL~ps~~~-~fkek~l~s~K~~~W~w~pFt   82 (445)
T KOG2656|consen    4 ADIRDILELPQKTRSLTNKQKSKPRSSTESRRRPEGMSREVYALLGENAPPLLPSDTN-NFKEKRLGSKKVRPWKWVPFT   82 (445)
T ss_pred             ccHHHHhcCCCCCCCCcccccccCCCchhccCCCcchhHHHHHHhcCCCCCccccccc-hhhhccCccccCCCceeeccC
Confidence            69999999998432 222 3344466677789999999999999997 5889998874 488776655 77799999999


Q ss_pred             ccccCCCeEEeccccccccccccccccccccccccceeccccccccccccccccccCCCCCCCCCCcccccccccccccC
Q 011271           77 NSARKDNLQLYHWVGFGNFWKCFHELGKRSFLMWGVVYNIFFNFFGVSHAFQVRVVNGVPPTGDYSFAKYNKSVDVVKYT  156 (489)
Q Consensus        77 N~AR~D~L~L~HW~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~y~FAKfN~kv~vp~Yt  156 (489)
                      ||||+|+++|||||                                       ++.   +..+||||||||++|+||.||
T Consensus        83 n~aRkD~~~l~HWv---------------------------------------r~~---d~~~dypfakfNk~vdipsYt  120 (445)
T KOG2656|consen   83 NSARKDDATLHHWV---------------------------------------RVG---DTPKDYPFAKFNKHVDIPSYT  120 (445)
T ss_pred             CccccCCceEEeee---------------------------------------ecc---CCCCCCchhhhccccCccccc
Confidence            99999999999999                                       432   246799999999999999999


Q ss_pred             HHHHHhhhcCCCCChHHHHHHHHHhhhcCcceEEEecCCC-----CCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCc
Q 011271          157 DEEYEKYLTDPMWTKEETDQLFELCERFDLRFIVIADRFP-----SSRTVEELKDRYYGVSRAILIARAPSPTDVSGHPL  231 (489)
Q Consensus       157 deEY~~~L~d~~WTkeETDyLfdLc~~fDLRfiVI~DRy~-----~~Rt~EdLK~RYY~V~~kl~~~r~~~~~e~~~~~l  231 (489)
                      |+||+.||.|+.||+|||||||+||++||||||||+|||+     .+|||||||+|||+||++|+.+|++++++.    +
T Consensus       121 ~eEYe~~l~dn~WskeETD~LF~lck~fDLRf~VIaDRyd~qq~~~sRTvEdLKeRyY~v~r~l~kAr~~s~sdl----l  196 (445)
T KOG2656|consen  121 DEEYEAHLNDNSWSKEETDYLFDLCKRFDLRFFVIADRYDNQQYKKSRTVEDLKERYYSVCRKLLKARAPSNSDL----L  196 (445)
T ss_pred             hHHHHHhhccccccHHHHHHHHHHHHhcCeeEEEEeeccchhhccccccHHHHHHHHHHHHHHHHHccCCCchhh----h
Confidence            9999999999999999999999999999999999999985     579999999999999999999999876551    2


Q ss_pred             cCCCCChHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC-CcccCCCccccccccccC-----
Q 011271          232 VKDPYNVSQEVERKRALSMVLSQTKHQERKDAEVLAEAKRITDSRMASRAAEEPEM-PVASHVGSESADRAVVLG-----  305 (489)
Q Consensus       232 ~~~~fd~~~E~~RK~~l~~l~~RT~eq~~EEe~L~~ElkrIe~~r~ker~~ke~~l-~~as~~~~~~~~~~~~~~-----  305 (489)
                      -.++||++||++||+||++||+||++||+||++|++|+|+||+ |++++..+.+++ ...++++.+.......++     
T Consensus       197 k~~~yd~e~Er~RKk~L~~L~sRt~~qvaEEe~Ll~E~KkiEa-rkke~~~~~~~l~rlld~ad~~i~~~stS~~~~~~~  275 (445)
T KOG2656|consen  197 KSLVYDAEHERERKKYLERLLSRTPEQVAEEEALLVELKKIEA-RKKERLAERQDLLRLLDSADGDITQYSTSPGMSSLE  275 (445)
T ss_pred             hccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH-HhhhhhhhhHHHHHhhhcccccccccccChhHHHHH
Confidence            2379999999999999999999999999999999999999996 667777776553 222222211000000000     


Q ss_pred             -CCCCCCCCCC--CCCCccCCCcccccchhhhhhhhcccceEeehHHHHHHHHhhcccchhhHHHHHHHHHHHhCCCCCC
Q 011271          306 -DTVSPSSNIQ--LPSATVVPSTSIIADSASTLASLRMLRVYLRTYALEQMVQAASSSAGLRTIKRVEQALQELGVNLKP  382 (489)
Q Consensus       306 -~~~~p~s~~~--~p~~~~~~~~~~~~~~~~~~~~~r~~GVyLRS~~l~~~~~a~~~~~g~k~~KrIe~~L~ELgv~~kP  382 (489)
                       ....+..-..  .+..++.+. .+...+.+.++.++..||.||+++|     ..++++|++++|+++|+|+||||.+.|
T Consensus       276 ~~~~a~kt~~k~~~a~v~a~~~-~s~~ss~~~F~~~~~~l~tlr~q~m-----~~panvgqrkiK~~EQ~lq~~~v~~sp  349 (445)
T KOG2656|consen  276 NALLAKKTRQKKHEANVPASPR-ESWMSSGIKFADLRVALVTLRSQRM-----KQPANVGQRKIKRLEQELQELGVRLSP  349 (445)
T ss_pred             HHHhhhhhhcccccccCccccc-hhhhhhhhhcccchhhhhccchhhc-----cCccccchhhhHHHHHHHHHhccCCCC
Confidence             0000000000  000000110 1234456778888888999999987     467889999999999999999999999


Q ss_pred             CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCc-ccCCCCCcccccccCCCCCcccccCcCCCcccccccc
Q 011271          383 KVPTKAVCAEHLELRKEILTLLNLQKQLQYKEAEGSSYRDGS-YIDMPGTPKRSQRAGDQDRTFVPESINFGGERVGKRD  461 (489)
Q Consensus       383 ~mPT~~Vc~~f~eLR~~Iv~LleLkK~l~k~E~El~~lr~~~-~~~~P~tp~~~~r~~~~~~~~~~~~~~~~~~r~~k~~  461 (489)
                       .||+.||..|+|||++|++|++|+.++..|++|+++++|++ +++++..             +.++...++-++..+-+
T Consensus       350 -~pte~l~~~fnElrs~vvtl~eL~~~l~~~~~e~~s~k~~~~~~~~~~~-------------~l~~P~~p~~~~~~~~e  415 (445)
T KOG2656|consen  350 -APTEQLCKSFNELRSDVVTLLELSPALYLCEYELSSLKHALNEALAILQ-------------ELSLPSRPVLPPFDVME  415 (445)
T ss_pred             -CCHHHHHHHHHHHHHHHHHHhhccHhhhhhhhhhhhhhhhhhhhhhhhh-------------hcCCCCCCCCCCcchhh
Confidence             89999999999999999999999999999999999999998 4444322             33333333334444444


Q ss_pred             cccc-----CCCCCCCCCCCCCCCCccc-ccCCC
Q 011271          462 QKRK-----GPGRLSEAPSSPAHKRPRK-KASDL  489 (489)
Q Consensus       462 ~krk-----~~~r~~~~~~~~~~~~~~~-~~~~~  489 (489)
                      +|++     +|    +.-||++|+|+|+ +||++
T Consensus       416 ~~~~~~~~~~p----~g~~~~~h~~kr~~~as~~  445 (445)
T KOG2656|consen  416 RKESTLKKIGP----LGIPSKKHVRKREAGASIT  445 (445)
T ss_pred             hhhhhcccCCC----CCCCcccccchhhcccccC
Confidence            4333     44    3345999999999 99975

>PF05499 DMAP1: DNA methyltransferase 1-associated protein 1 (DMAP1); InterPro: IPR008468 DNA methylation can contribute to transcriptional silencing through several transcriptionally repressive complexes, which include methyl-CpG binding domain proteins (MBDs) and histone deacetylases (HDACs) Back     alignment and domain information
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains Back     alignment and domain information
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins Back     alignment and domain information
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains Back     alignment and domain information
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A Back     alignment and domain information
>PLN03212 Transcription repressor MYB5; Provisional Back     alignment and domain information
>PLN03091 hypothetical protein; Provisional Back     alignment and domain information
>PLN03212 Transcription repressor MYB5; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query489
3hm5_A93 Sant Domain Of Human Dna Methyltransferase 1 Associ 1e-18
>pdb|3HM5|A Chain A, Sant Domain Of Human Dna Methyltransferase 1 Associated Protein 1 Length = 93 Back     alignment and structure 
Iteration: 1

 Score = 91.3 bits (225), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 45/90 (50%), Positives = 60/90 (66%), Gaps = 4/90 (4%)
Query: 140 DYSFAKYNKSVDVVKYTDEEYEKYLTDPMWTKEETDQLFELCERFDLRFIVIADRFPSS- 198
           DY FA++NK+V V  Y+++EY+ YL D  WTK ETD LF+L  RFDLRF+VI DR+    
Sbjct: 4   DYPFARFNKTVQVPVYSEQEYQLYLHDDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQ 63
Query: 199 ---RTVEELKDRYYGVSRAILIARAPSPTD 225
              R+VE+LK+RYY +   +   RA   TD
Sbjct: 64  FKKRSVEDLKERYYHICAKLANVRAVPGTD 93

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query489
3hm5_A93 DNA methyltransferase 1-associated protein 1; DNA 1e-40
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-05
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens} Length = 93 Back     alignment and structure
 Score =  140 bits (354), Expect = 1e-40
 Identities = 45/91 (49%), Positives = 60/91 (65%), Gaps = 4/91 (4%)

Query: 139 GDYSFAKYNKSVDVVKYTDEEYEKYLTDPMWTKEETDQLFELCERFDLRFIVIADRFP-- 196
            DY FA++NK+V V  Y+++EY+ YL D  WTK ETD LF+L  RFDLRF+VI DR+   
Sbjct: 3   KDYPFARFNKTVQVPVYSEQEYQLYLHDDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQ 62

Query: 197 --SSRTVEELKDRYYGVSRAILIARAPSPTD 225
               R+VE+LK+RYY +   +   RA   TD
Sbjct: 63  QFKKRSVEDLKERYYHICAKLANVRAVPGTD 93
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query489
4iej_A93 DNA methyltransferase 1-associated protein 1; DNA 100.0
3hm5_A93 DNA methyltransferase 1-associated protein 1; DNA 100.0
1x58_A62 Hypothetical protein 4930532D21RIK; MUS musculus a 97.44
3osg_A126 MYB21; transcription-DNA complex, MYB2, R2R3 domai 97.21
2cu7_A72 KIAA1915 protein; nuclear protein, SANT domain, DN 97.14
1guu_A52 C-MYB, MYB proto-oncogene protein; transcription, 96.77
2k9n_A107 MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind 96.72
3sjm_A64 Telomeric repeat-binding factor 2; human telomeric 96.71
2din_A66 Cell division cycle 5-like protein; MYB_DNA-bindin 96.69
1gv2_A105 C-MYB, MYB proto-oncogene protein; transcription, 96.69
1w0t_A53 Telomeric repeat binding factor 1; telomere, DNA-b 96.58
2llk_A73 Cyclin-D-binding MYB-like transcription factor 1; 96.36
2ltp_A89 Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s 95.36
1x41_A60 Transcriptional adaptor 2-like, isoform B; transcr 96.27
2d9a_A60 B-MYB, MYB-related protein B; DNA binding, structu 96.26
1gvd_A52 MYB proto-oncogene protein; transcription, transcr 96.23
1ity_A69 TRF1; helix-turn-helix, telomeres, DNA binding, MY 96.22
2elk_A58 SPCC24B10.08C protein; hypothetical protein, struc 96.16
2yum_A75 ZZZ3 protein, zinc finger ZZ-type-containing prote 96.16
2aje_A105 Telomere repeat-binding protein; DNA-binding, Trp, 96.13
2ckx_A83 NGTRF1, telomere binding protein TBP1; nuclear pro 96.1
3zqc_A131 MYB3; transcription-DNA complex, DNA-binding prote 96.06
2cqr_A73 RSGI RUH-043, DNAJ homolog subfamily C member 1; m 96.02
1h8a_C128 AMV V-MYB, MYB transforming protein; transcription 95.99
2juh_A121 Telomere binding protein TBP1; helix, nucleus, nuc 95.5
2cjj_A93 Radialis; plant development, DNA-binding protein, 95.5
2dim_A70 Cell division cycle 5-like protein; MYB_DNA-bindin 95.46
2yus_A79 SWI/SNF-related matrix-associated actin- dependent 95.43
2roh_A122 RTBP1, telomere binding protein-1; plant, nucleus, 95.42
1h89_C159 C-MYB, MYB proto-oncogene protein; transcription/D 95.17
1wgx_A73 KIAA1903 protein; MYB DNA-binding domain, human cD 94.67
2eqr_A61 N-COR1, N-COR, nuclear receptor corepressor 1; SAN 94.43
2cqq_A72 RSGI RUH-037, DNAJ homolog subfamily C member 1; m 93.52
3osg_A126 MYB21; transcription-DNA complex, MYB2, R2R3 domai 93.49
1gv2_A105 C-MYB, MYB proto-oncogene protein; transcription, 92.74
2k9n_A107 MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind 91.84
1h8a_C128 AMV V-MYB, MYB transforming protein; transcription 91.63
1h89_C159 C-MYB, MYB proto-oncogene protein; transcription/D 90.19
3zqc_A131 MYB3; transcription-DNA complex, DNA-binding prote 89.54
4eef_G74 F-HB80.4, designed hemagglutinin binding protein; 89.37
1ug2_A95 2610100B20RIK gene product; hypothetical protein, 88.38
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A* Back     alignment and structure
Probab=100.00  E-value=1.8e-42  Score=293.68  Aligned_cols=86  Identities=50%  Similarity=0.914  Sum_probs=69.7

Q ss_pred             CCCCCcccccccccccccCHHHHHhhhcCCCCChHHHHHHHHHhhhcCcceEEEecCCC----CCCCHHHHHHHHHHHHH
Q 011271          138 TGDYSFAKYNKSVDVVKYTDEEYEKYLTDPMWTKEETDQLFELCERFDLRFIVIADRFP----SSRTVEELKDRYYGVSR  213 (489)
Q Consensus       138 ~~~y~FAKfN~kv~vp~YtdeEY~~~L~d~~WTkeETDyLfdLc~~fDLRfiVI~DRy~----~~Rt~EdLK~RYY~V~~  213 (489)
                      +++|||||||++|+||+||+|||++||++++||+|||||||+||++|||||+||+|||.    ..|||||||+|||+||+
T Consensus         2 ~~~y~FakfN~~v~ip~yt~eEY~~~L~~~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~   81 (93)
T 4iej_A            2 GKDYPFARFNKTVQVPVYSEQEYQLYLHDDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICA   81 (93)
T ss_dssp             ------------CCCCCCCHHHHHHHTCBTTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHH
T ss_pred             CCCCCccccCCcCCCcccCHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHH
Confidence            46899999999999999999999999999999999999999999999999999999997    37999999999999999


Q ss_pred             HHHHhcCCCC
Q 011271          214 AILIARAPSP  223 (489)
Q Consensus       214 kl~~~r~~~~  223 (489)
                      +|+++|+|+.
T Consensus        82 ~l~~~r~~~~   91 (93)
T 4iej_A           82 KLANVRAVPG   91 (93)
T ss_dssp             HHHHHTC---
T ss_pred             HHHHhhCCCC
Confidence            9999998764
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens} Back     alignment and structure
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1 Back     alignment and structure
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Back     alignment and structure
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A Back     alignment and structure
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Back     alignment and structure
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A Back     alignment and structure
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A Back     alignment and structure
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Back     alignment and structure
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens} Back     alignment and structure
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens} Back     alignment and structure
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A Back     alignment and structure
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A Back     alignment and structure
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe} Back     alignment and structure
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3 Back     alignment and structure
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A Back     alignment and structure
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Back     alignment and structure
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Back     alignment and structure
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa} Back     alignment and structure
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3 Back     alignment and structure
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens} Back     alignment and structure
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa} Back     alignment and structure
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Back     alignment and structure
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Back     alignment and structure
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A Back     alignment and structure
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Back     alignment and structure
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Back     alignment and structure
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Back     alignment and structure
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Back     alignment and structure
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene} Back     alignment and structure
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 489
d2iw5b165 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Hu 1e-04
d1xc5a168 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 7e-04
d2cu7a165 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sap 0.002
d1gv2a247 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mou 0.002
d1x41a147 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, T 0.003
>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Length = 65 Back     information, alignment and structure

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (88), Expect = 1e-04
 Identities = 9/45 (20%), Positives = 21/45 (46%), Gaps = 1/45 (2%)

Query: 165 TDPMWTKEETDQLFELCERFDLRFIVIADRFPSSRTVEELKDRYY 209
            +  WT EE     +   ++   F  I+D    +++V ++K+ + 
Sbjct: 4   CNARWTTEEQLLAVQAIRKYGRDFQAISDVIG-NKSVVQVKNFFV 47
>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 68 Back     information, alignment and structure
>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Length = 65 Back     information, alignment and structure
>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 47 Back     information, alignment and structure
>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Length = 47 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query489
d2cu7a165 MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960 97.36
d1w0ta_52 DNA-binding domain of human telomeric protein, hTR 97.34
d1x41a147 Transcriptional adaptor 2-like, TADA2L, isoform b 97.19
d1w0ua_55 Telomeric repeat binding factor 2, TRF2 {Human (Ho 97.1
d1gv2a247 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 97.07
d1guua_50 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 96.46
d1xc5a168 Nuclear receptor corepressor 2 {Human (Homo sapien 96.42
d2iw5b165 REST corepressor 1, CoREST {Human (Homo sapiens) [ 96.39
d2ckxa183 Telomere binding protein TBP1 {Tobacco (Nicotiana 96.35
d2cqra160 DnaJ homolog subfamily C member 1 {Human (Homo sap 95.9
d1gvda_52 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 95.7
d2cjja163 Radialis {Garden snapdragon (Antirrhinum majus) [T 95.62
d1ug2a_95 2610100b20rik gene product {Mouse (Mus musculus) [ 93.91
d1igna186 DNA-binding domain of rap1 {Baker's yeast (Sacchar 92.33
d2crga157 Metastasis associated protein MTA3 {Mouse (Mus mus 91.03
d1x58a149 Hypothetical protein 4930532d21rik {Mouse (Mus mus 89.27
>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.36  E-value=3.1e-05  Score=58.75  Aligned_cols=49  Identities=24%  Similarity=0.265  Sum_probs=44.3

Q ss_pred             CCCChHHHHHHHHHhhhcCcceEEEecCCCCCCCHHHHHHHHHHHHHHHH
Q 011271          167 PMWTKEETDQLFELCERFDLRFIVIADRFPSSRTVEELKDRYYGVSRAIL  216 (489)
Q Consensus       167 ~~WTkeETDyLfdLc~~fDLRfiVI~DRy~~~Rt~EdLK~RYY~V~~kl~  216 (489)
                      ..||.||-..|++++..|+-.|-.|+.-++ .||..+++.|||.+-+...
T Consensus         3 ~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~-~Rt~~q~k~ry~~~~~~~~   51 (65)
T d2cu7a1           3 VKWTIEEKELFEQGLAKFGRRWTKISKLIG-SRTVLQVKSYARQYFKNKV   51 (65)
T ss_dssp             CCCCHHHHHHHHHHHHHTCSCHHHHHHHHS-SSCHHHHHHHHHHHHHHHS
T ss_pred             CCCCHHHHHHHHHHHHHhcchHHHHHHHcC-CCCHHHHHHHHHHHHHHHH
Confidence            469999999999999999999999998666 7999999999998877654
>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Back     information, alignment and structure
>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure