Citrus Sinensis ID: 011277

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------49
Protein Sequence
MWGRQREASMMYKRTSSRDRSSTFDVEETTALVQNGTEVENTNPSWKLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNVVETKGKSLQEIEIALLPQE
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccHHHHcccccccccccccccccHHHHHHHHHHHHHccccccEEEcccHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHcHHccccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHcccHHHHHHHHHHHccccHHHHHHHHHHHHHcccccccccHHHHHccccHHHHHHHHHHHHHHHHccccEEEEccHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHccccccHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccccccccccccccHHHEEHEHHHHHHHHHcccccccccHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHcHHHcccHEEHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHcccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccccHHHHHccccHHHHHHHHHHHHHHHHHcccEEEEEcHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccccccEEEcHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHcccc
Coil and Loop (DISEMBL)
mwgrqreasmmykrtssrdrsstfdveeTTALVQNgteventnpswklsFPHVLVATLSSFLFGYhlgvvneplesisldlgfngntLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVvgtgmglgPTVAALYVTevsppfvrgtyGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCaesphwlykkgrTAEAEAEFEKLLGGSHVKSSLAelskldrgddgdivKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAAsssyipgsasLYLSVGGMLMFVLTFAlgagpvpslllpeifpSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNVVETKGKSLQEIEIALLPQE
Flexible Loop (DISEMBL)
mwgrqreasmmykrtssrdrsstfdvEETTALvqngteventnpsWKLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKllggshvksslaelskldrgddgDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNVVEtkgkslqeieiallpqe
Low Complexity Region (SEG)
MWGRQREASMMYKrtssrdrsstFDVEETTALVQNGTEVENTNPSWKLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGllflrlleqlgpqllYSIFGTFCLMAVAFVKRNVVETKGKSLQEIEIALLPQE
Disordered region (IsUnstruct)
******************************************NPSWKLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLL*****************GDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNVVETKGKSLQEIEI******
Disordered Region (DISOPRED)
************************************************SFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSS*********************LYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNVVETKGKSLQEIEIAL****
Disordered Region (DISEMBL)
**************************EETTALVQNGTEVENTNPSWKLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNVVETKGKSLQEIEIALLPQE
Disordered Region (DISPRO)
******************************************NPSWKLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNVVETKGKSLQEIEIALL***
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MWGRQREASMMYKRTSSRDRSSTFDVEETTALVQNGTEVENTNPSWKLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNVVETKGKSLQEIEIALLPQE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	489	2.2.26 [Sep-21-2011]
Q9FYG3	493	Probable plastidic glucos	yes	no	0.997	0.989	0.747	0.0
Q2V4B9	495	Probable plastidic glucos	no	no	0.983	0.971	0.687	0.0
Q0WVE9	524	Probable plastidic glucos	no	no	0.907	0.847	0.446	1e-105
Q56ZZ7	546	Plastidic glucose transpo	no	no	0.961	0.860	0.420	1e-100
C0SPB2	457	Putative metabolite trans	yes	no	0.854	0.914	0.314	3e-49
P46333	461	Probable metabolite trans	no	no	0.858	0.911	0.315	7e-49
Q9FRL3	487	Sugar transporter ERD6-li	no	no	0.860	0.864	0.308	2e-46
P15729	468	Glucose transport protein	N/A	no	0.862	0.901	0.317	4e-46
Q3ECP7	470	Sugar transporter ERD6-li	no	no	0.846	0.880	0.308	9e-46
P87110	557	Myo-inositol transporter	yes	no	0.928	0.815	0.282	1e-45

>sp|Q9FYG3|PLST2_ARATH Probable plastidic glucose transporter 2 OS=Arabidopsis thaliana GN=At1g67300 PE=2 SV=1

 Score =  731 bits (1888), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/492 (74%), Positives = 424/492 (86%), Gaps = 4/492 (0%)

Query: 1   MWGRQREASMMYKRTSSRDRSSTFDVEETTALVQNG--TEVENTNPSWKLSFPHVLVATL 58
           M G QRE S MYKRTSSRD S   DVE+++ L++N    E+E TNPSWK S PHVLVAT+
Sbjct: 1   MLGLQRETSSMYKRTSSRDYSPMIDVEDSSGLLENDVDNEMETTNPSWKCSLPHVLVATI 60

Query: 59  SSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRR 118
           SSFLFGYHLGVVNEPLESIS DLGF+G+TLAEGLVVS+CLGGAF+GS  SG +ADG GRR
Sbjct: 61  SSFLFGYHLGVVNEPLESISSDLGFSGDTLAEGLVVSVCLGGAFLGSLFSGGVADGFGRR 120

Query: 119 RAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTY 178
           RAFQ+CALPMI+GA +S  + +L  MLLGRF+VGTGMGLGP VAALYVTEVSP FVRGTY
Sbjct: 121 RAFQICALPMILGAFVSGVSNSLAVMLLGRFLVGTGMGLGPPVAALYVTEVSPAFVRGTY 180

Query: 179 GAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKK 238
           G+FIQIATCLGLM +L IGIPV  I GWWR+CFW+S +PAA+L L M  CAESP WL+K+
Sbjct: 181 GSFIQIATCLGLMAALFIGIPVHNITGWWRVCFWLSTIPAALLALGMFLCAESPQWLFKQ 240

Query: 239 GRTAEAEAEFEKLLGGSHVKSSLAELSK--LDRGDDGDIVKFEELLYGRHFRVVFIGSTL 296
           G+ AEAEAEFE+LLGGSHVK+++AEL K  LD+ D+ D+V   ELLYGRH RVVFIGSTL
Sbjct: 241 GKIAEAEAEFERLLGGSHVKTAMAELYKLDLDKTDEPDVVSLSELLYGRHSRVVFIGSTL 300

Query: 297 FALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQW 356
           FALQQLSGINA+FYFSS+VFKSAG+ S L N+FVG++NLLGSV+AMVLMDK+GRK LL W
Sbjct: 301 FALQQLSGINAVFYFSSTVFKSAGVPSDLGNIFVGVSNLLGSVIAMVLMDKVGRKLLLLW 360

Query: 357 SFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRI 416
           SF  MA +MA+QV A+SSY+P  ++L LSVGG L+FVLTFALGAGPVP LLLPEIFPSRI
Sbjct: 361 SFIGMAAAMALQVGATSSYLPHFSALCLSVGGTLVFVLTFALGAGPVPGLLLPEIFPSRI 420

Query: 417 RAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNVVETKGK 476
           RAKAMA CMSVHWVINFFVGLLFLRLLE+LGP+LLYS+F TFCLMAV FVKRNV+ETKGK
Sbjct: 421 RAKAMAFCMSVHWVINFFVGLLFLRLLEKLGPRLLYSMFSTFCLMAVMFVKRNVIETKGK 480

Query: 477 SLQEIEIALLPQ 488
           +LQEIEI+LL +
Sbjct: 481 TLQEIEISLLAK 492

May be involved in the efflux of glucose towards the cytosol.
Arabidopsis thaliana (taxid: 3702)

>sp|Q2V4B9|PLST3_ARATH Probable plastidic glucose transporter 3 OS=Arabidopsis thaliana GN=At1g79820 PE=2 SV=2

 Score =  666 bits (1718), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/486 (68%), Positives = 392/486 (80%), Gaps = 5/486 (1%)

Query: 1   MWGRQREASMMYKRTSSRDRSSTFDVEETTALVQNGTEVENTNPSWKLSFPHVLVATLSS 60
           M GR  +     KR  S++  S  D  ET   +  GT  +  NPSWK S PHVLVA+L+S
Sbjct: 11  MRGRHID-----KRVPSKEFLSALDKAETAVRLPTGTGKDCGNPSWKRSLPHVLVASLTS 65

Query: 61  FLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRA 120
            LFGYHLGVVNE LESIS+DLGF+GNT+AEGLVVS CLGGAFIGS  SG +ADGVGRRRA
Sbjct: 66  LLFGYHLGVVNETLESISIDLGFSGNTIAEGLVVSTCLGGAFIGSLFSGLVADGVGRRRA 125

Query: 121 FQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGA 180
           FQL ALPMI+GAS+SA+T +L+GMLLGRF+VG GMG+GP+V ALYVTEVSP +VRGTYG+
Sbjct: 126 FQLSALPMIVGASVSASTESLMGMLLGRFLVGIGMGIGPSVTALYVTEVSPAYVRGTYGS 185

Query: 181 FIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGR 240
             QIATC+GL+GSL  GIP K+  GWWRICFW+S VPAA+L + M  C ESP WL+K+GR
Sbjct: 186 STQIATCIGLLGSLFAGIPAKDNLGWWRICFWISTVPAAMLAVFMELCVESPQWLFKRGR 245

Query: 241 TAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQ 300
            AEAEA FEKLLGGS+VK+++AEL K DRGDD D  K  ELL+GR FRVVFIGSTLFALQ
Sbjct: 246 AAEAEAVFEKLLGGSYVKAAMAELVKSDRGDDADSAKLSELLFGRSFRVVFIGSTLFALQ 305

Query: 301 QLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFS 360
           QLSGINA+FYFSS+VFK AG+ S  AN+ VG+ NLLGS VA+VLMDKLGRK LL  SF  
Sbjct: 306 QLSGINAVFYFSSTVFKKAGVPSASANICVGVCNLLGSTVAVVLMDKLGRKVLLIGSFAG 365

Query: 361 MAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKA 420
           MAVS+ +Q  A +S      +L+LSVGGML+FVL+FA GAGPVPSLLL EI P R+RA A
Sbjct: 366 MAVSLGLQAIAYTSLPSPFGTLFLSVGGMLLFVLSFATGAGPVPSLLLSEICPGRLRATA 425

Query: 421 MAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNVVETKGKSLQE 480
           +AVC++VHWVINFFVGLLFLR+LEQLG  LL +IFG FC++AV FV++NVVETKGKSLQE
Sbjct: 426 LAVCLAVHWVINFFVGLLFLRMLEQLGSVLLNAIFGFFCVVAVIFVQKNVVETKGKSLQE 485

Query: 481 IEIALL 486
           IEI+LL
Sbjct: 486 IEISLL 491

May be involved in the efflux of glucose towards the cytosol.

Arabidopsis thaliana (taxid: 3702)

>sp|Q0WVE9|PLST1_ARATH Probable plastidic glucose transporter 1 OS=Arabidopsis thaliana GN=At1g05030 PE=2 SV=2

 Score =  382 bits (982), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 199/446 (44%), Positives = 292/446 (65%), Gaps = 2/446 (0%)

Query: 46  WKLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGS 105
           W  +FPHV VA++++FLFGYH+GV+N P+ SI+ +LGF GN++ EGLVVS+ + GAFIGS
Sbjct: 76  WLSAFPHVSVASMANFLFGYHIGVMNGPIVSIARELGFEGNSILEGLVVSIFIAGAFIGS 135

Query: 106 TLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALY 165
            ++G + D  G RR FQ+  +P+I+GA +SA   +L  +L GRF+VG G+G+   +  +Y
Sbjct: 136 IVAGPLVDKFGYRRTFQIFTIPLILGALVSAQAHSLDEILCGRFLVGLGIGVNTVLVPIY 195

Query: 166 VTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAM 225
           ++EV+P   RG+ G   QI TCLG++ SLL+GIP ++   WWR   +V+ +P  +L L M
Sbjct: 196 ISEVAPTKYRGSLGTLCQIGTCLGIIFSLLLGIPAEDDPHWWRTMLYVASMPGFLLALGM 255

Query: 226 VFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDI-VKFEELLYG 284
            F  ESP WL K GR  +A+     + GGS V+ ++ +   + +    ++  ++ ELL  
Sbjct: 256 QFAVESPRWLCKVGRLDDAKVVIRNIWGGSEVEKAVEDFQSVMKNSGSNLNSRWLELLDK 315

Query: 285 RHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGL-ANVFVGIANLLGSVVAMV 343
            H RV FIG +LF LQQ +GIN + YFSS  F++ G++SG  A+++VG+ N  G++ A  
Sbjct: 316 PHSRVAFIGGSLFVLQQFAGINGVLYFSSLTFQNVGITSGAQASLYVGVTNFAGALCASY 375

Query: 344 LMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPV 403
           L+DK GRK LL  S+  MAVSM + V A    +    S  LS+ G LM++ +FA+GAGPV
Sbjct: 376 LIDKQGRKKLLIGSYLGMAVSMFLIVYAVGFPLDEDLSQSLSILGTLMYIFSFAIGAGPV 435

Query: 404 PSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAV 463
             L++PE+  +R R K M    SVHWV NF VGL FL L+E+ G   +Y+ FG+  L+A 
Sbjct: 436 TGLIIPELSSNRTRGKIMGFSFSVHWVSNFLVGLFFLDLVEKYGVGTVYASFGSVSLLAA 495

Query: 464 AFVKRNVVETKGKSLQEIEIALLPQE 489
           AF     VETKG+SL+EIE++L  ++
Sbjct: 496 AFSHLFTVETKGRSLEEIELSLNSRD 521

May be involved in the efflux of glucose towards the cytosol.

Arabidopsis thaliana (taxid: 3702)

>sp|Q56ZZ7|PLST4_ARATH Plastidic glucose transporter 4 OS=Arabidopsis thaliana GN=At5g16150 PE=1 SV=2

 Score =  365 bits (938), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 201/478 (42%), Positives = 299/478 (62%), Gaps = 8/478 (1%)

Query: 9   SMMYKRTSSRDRSSTFDVEETTALVQNGTEVENTNPSWKLSFPHVLVATLSSFLFGYHLG 68
           S +  R+     SS  D EE   L   G              P V VA L + LFGYHLG
Sbjct: 72  SSVKARSVRAQASSDGDEEEAIPLRSEGKSSGTV-------LPFVGVACLGAILFGYHLG 124

Query: 69  VVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPM 128
           VVN  LE ++ DLG   NT+ +G +VS  L GA +GS   G +AD  GR R FQL A+P+
Sbjct: 125 VVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGALADKFGRTRTFQLDAIPL 184

Query: 129 IIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCL 188
            IGA + AT +++  M++GR + G G+G+   +  LY++E+SP  +RG  G+  Q+  C+
Sbjct: 185 AIGAFLCATAQSVQTMIVGRLLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICI 244

Query: 189 GLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEF 248
           G++ +L+ G+P+     WWR  F V+++P+ +L + M F  ESP WL ++G+ +EAE   
Sbjct: 245 GILAALIAGLPLAANPLWWRTMFGVAVIPSVLLAIGMAFSPESPRWLVQQGKVSEAEKAI 304

Query: 249 EKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAI 308
           + L G   V   + +LS   +G       + +L   R+++VV +G+ LF  QQL+GINA+
Sbjct: 305 KTLYGKERVVELVRDLSASGQGSSEPEAGWFDLFSSRYWKVVSVGAALFLFQQLAGINAV 364

Query: 309 FYFSSSVFKSAGLSSGL-ANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAI 367
            Y+S+SVF+SAG+ S + A+  VG +N+ G+ VA  LMDK+GRK+LL  SF  MA+SM +
Sbjct: 365 VYYSTSVFRSAGIQSDVAASALVGASNVFGTAVASSLMDKMGRKSLLLTSFGGMALSMLL 424

Query: 368 QVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSV 427
              + +     + S  L+V G +++VL+F+LGAGPVP+LLLPEIF SRIRAKA+A+ + +
Sbjct: 425 LSLSFTWKALAAYSGTLAVVGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGM 484

Query: 428 HWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNVVETKGKSLQEIEIAL 485
           HW+ NF +GL FL ++ + G   +Y  F   C++AV ++  NVVETKG+SL+EIE+AL
Sbjct: 485 HWISNFVIGLYFLSVVTKFGISSVYLGFAGVCVLAVLYIAGNVVETKGRSLEEIELAL 542

May be involved in the efflux of glucose towards the cytosol.

Arabidopsis thaliana (taxid: 3702)

>sp|C0SPB2|YWTG_BACSU Putative metabolite transport protein YwtG OS=Bacillus subtilis (strain 168) GN=ywtG PE=3 SV=1

 Score =  196 bits (499), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 135/429 (31%), Positives = 225/429 (52%), Gaps = 11/429 (2%)

Query: 58  LSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGR 117
           L   L+GY  GV++  +  +  +LG N  T  EGLVVS  L GA +GS  +G + D  GR
Sbjct: 15  LGGALYGYDTGVISGAILFMKKELGLNAFT--EGLVVSSLLVGAILGSGAAGKLTDRFGR 72

Query: 118 RRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGT 177
           ++A    AL   IG    A   N   M+L R ++G  +G   T+  LY++E++P   RG 
Sbjct: 73  KKAIMAAALLFCIGGLGVALAPNTGVMVLFRIILGLAVGTSTTIVPLYLSELAPKHKRGA 132

Query: 178 YGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYK 237
             +  Q+   +G++ S ++     + A  WR    ++ VP+ +L + ++F  ESP WL+ 
Sbjct: 133 LSSLNQLMITVGILLSYIVNYIFAD-AEAWRWMLGLAAVPSLLLLIGILFMPESPRWLFT 191

Query: 238 KGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFI-GSTL 296
            G  ++A+   EKL G   +   + ++ + ++ D+G + +    L+    R   I G  L
Sbjct: 192 NGEESKAKKILEKLRGTKDIDQEIHDIKEAEKQDEGGLKE----LFDPWVRPALIAGLGL 247

Query: 297 FALQQLSGINAIFYFSSSVFKSAGL---SSGLANVFVGIANLLGSVVAMVLMDKLGRKAL 353
             LQQ  G N I Y++   F + G    +S L  V +G  N+L ++VA+ ++DK+GRK L
Sbjct: 248 AFLQQFIGTNTIIYYAPKTFTNVGFGNSASILGTVGIGTVNVLMTLVAIKIIDKIGRKPL 307

Query: 354 LQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFP 413
           L +    M +S+ +    +  +    A+ + +V  + +F++ FA+  GPV  ++LPE+FP
Sbjct: 308 LLFGNAGMVISLIVLALVNLFFDNTPAASWTTVICLGVFIVVFAVSWGPVVWVMLPELFP 367

Query: 414 SRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNVVET 473
             +R     V   +  V    V L +  L+E +G   L+ I+    +MA  FV+  V ET
Sbjct: 368 LHVRGIGTGVSTLMLHVGTLIVSLTYPILMEAIGISYLFLIYAAIGIMAFLFVRFKVTET 427

Query: 474 KGKSLQEIE 482
           KG+SL+EIE
Sbjct: 428 KGRSLEEIE 436

Bacillus subtilis (strain 168) (taxid: 224308)

>sp|P46333|CSBC_BACSU Probable metabolite transport protein CsbC OS=Bacillus subtilis (strain 168) GN=csbC PE=1 SV=3

 Score =  195 bits (495), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 137/434 (31%), Positives = 232/434 (53%), Gaps = 14/434 (3%)

Query: 58  LSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGR 117
           L   L+GY  GV++  L  I+ D+     TL EGLVVSM L GA  GS LSG  +D  GR
Sbjct: 16  LGGLLYGYDTGVISGALLFINNDIPLT--TLTEGLVVSMLLLGAIFGSALSGTCSDRWGR 73

Query: 118 RRAFQLCALPMIIGASISATTRNLIGMLLG-RFVVGTGMGLGPTVAALYVTEVSPPFVRG 176
           R+   + ++  IIGA   A ++  IGML+  R ++G  +G    +  +Y++E++P  +RG
Sbjct: 74  RKVVFVLSIIFIIGALACAFSQT-IGMLIASRVILGLAVGGSTALVPVYLSEMAPTKIRG 132

Query: 177 TYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLY 236
           T G    +    G++ + ++          WR    ++ VPA +L + + F  ESP WL 
Sbjct: 133 TLGTMNNLMIVTGILLAYIVNYLFTPFEA-WRWMVGLAAVPAVLLLIGIAFMPESPRWLV 191

Query: 237 KKGRTAEAEAEFEKLLGGSHVKSSLA-ELSKLDRGDDGDIVKFEELLYGRHFR-VVFIGS 294
           K+G    +E E  +++  +H    +  EL+++ +G+         +L  +  R ++ IG 
Sbjct: 192 KRG----SEEEARRIMNITHDPKDIEMELAEMKQGEAEKKETTLGVLKAKWIRPMLLIGV 247

Query: 295 TLFALQQLSGINAIFYFSSSVFKSAGL---SSGLANVFVGIANLLGSVVAMVLMDKLGRK 351
            L   QQ  GIN + Y++ ++F  AGL   +S L  + +GI N++  + AM+L+D++GRK
Sbjct: 248 GLAIFQQAVGINTVIYYAPTIFTKAGLGTSASALGTMGIGILNVIMCITAMILIDRVGRK 307

Query: 352 ALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEI 411
            LL W    + +S+A       +    +++ +++V  + ++++ +    GPV  +L+PE+
Sbjct: 308 KLLIWGSVGITLSLAALSGVLLTLGLSASTAWMTVVFLGVYIVFYQATWGPVVWVLMPEL 367

Query: 412 FPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNVV 471
           FPS+ R  A      V    N  V L+F  +L  +G   ++ +F   CL++  F    V 
Sbjct: 368 FPSKARGAATGFTTLVLSAANLIVSLVFPLMLSAMGIAWVFMVFSVICLLSFFFAFYMVP 427

Query: 472 ETKGKSLQEIEIAL 485
           ETKGKSL+EIE +L
Sbjct: 428 ETKGKSLEEIEASL 441

Could serve either a nutritional or an osmotic protection function.

Bacillus subtilis (strain 168) (taxid: 224308)

>sp|Q9FRL3|ERDL6_ARATH Sugar transporter ERD6-like 6 OS=Arabidopsis thaliana GN=At1g75220 PE=1 SV=1

 Score =  187 bits (474), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 136/441 (30%), Positives = 235/441 (53%), Gaps = 20/441 (4%)

Query: 53  VLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVV-SMCLGGAFIGSTLSGWI 111
           VL+  L    FG+  G  +    +I+ DLG    T++E  V  S+   GA +G+  SG I
Sbjct: 52  VLIVALGPIQFGFTCGYSSPTQAAITKDLGL---TVSEYSVFGSLSNVGAMVGAIASGQI 108

Query: 112 ADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSP 171
           A+ +GR+ +  + A+P IIG    +  ++   + +GR + G G+G+      +Y+ E++P
Sbjct: 109 AEYIGRKGSLMIAAIPNIIGWLCISFAKDTSFLYMGRLLEGFGVGIISYTVPVYIAEIAP 168

Query: 172 PFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAES 231
             +RG  G+  Q++  +G+M + L+G+ V      WRI   + I+P  +L   + F  ES
Sbjct: 169 QNMRGGLGSVNQLSVTIGIMLAYLLGLFVP-----WRILAVLGILPCTLLIPGLFFIPES 223

Query: 232 PHWLYKKGRTAEAEAEFEKLLG-GSHVKSSLAELSK-LDRGDDGDIVKFEELLYGRHFRV 289
           P WL K G T E E   + L G  + +   + E+ + +      + V+F +L   R++  
Sbjct: 224 PRWLAKMGMTDEFETSLQVLRGFETDITVEVNEIKRSVASSTKRNTVRFVDLKRRRYYFP 283

Query: 290 VFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVF-VGIANLLGSVVAMVLMDKL 348
           + +G  L  LQQL GIN + ++SS++F+SAG++S  A  F VG   ++ + ++  L+DK 
Sbjct: 284 LMVGIGLLVLQQLGGINGVLFYSSTIFESAGVTSSNAATFGVGAIQVVATAISTWLVDKA 343

Query: 349 GRKALLQWSFFSMAVSMAIQVAAS--SSYIPGSASLY-----LSVGGMLMFVLTFALGAG 401
           GR+ LL  S   M +S+ I  AA     ++   + +Y     LSV G++  V+ F+LG G
Sbjct: 344 GRRLLLTISSVGMTISLVIVAAAFYLKEFVSPDSDMYSWLSILSVVGVVAMVVFFSLGMG 403

Query: 402 PVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLM 461
           P+P L++ EI P  I+  A ++    +W  ++ + +    LL        ++++G  C  
Sbjct: 404 PIPWLIMSEILPVNIKGLAGSIATLANWFFSWLITMT-ANLLLAWSSGGTFTLYGLVCAF 462

Query: 462 AVAFVKRNVVETKGKSLQEIE 482
            V FV   V ETKGK+L+E++
Sbjct: 463 TVVFVTLWVPETKGKTLEELQ 483

Sugar transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|P15729|GLCP_SYNY3 Glucose transport protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=gtr PE=3 SV=2

 Score =  186 bits (471), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 143/451 (31%), Positives = 229/451 (50%), Gaps = 29/451 (6%)

Query: 55  VATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADG 114
           VA L  FLFG+   V+N  + +  L   F  ++L  GL VS+ L G+ +G+  +G IAD 
Sbjct: 23  VAALGGFLFGFDTAVINGAVAA--LQKHFQTDSLLTGLSVSLALLGSALGAFGAGPIADR 80

Query: 115 VGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFV 174
            GR +   L A+   + +  S     +   +  R + G G+G    +A  Y+ EVSP  +
Sbjct: 81  HGRIKTMILAAVLFTLSSIGSGLPFTIWDFIFWRVLGGIGVGAASVIAPAYIAEVSPAHL 140

Query: 175 RGTYGAFIQIATCLGLMGSLLIGIPVKEIAG------W------WRICFWVSIVPAAILC 222
           RG  G+  Q+A   G+  +LL    +  +AG      W      WR  FW  ++PA +  
Sbjct: 141 RGRLGSLQQLAIVSGIFIALLSNWFIALMAGGSAQNPWLFGAAAWRWMFWTELIPALLYG 200

Query: 223 LAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELL 282
           +      ESP +L  +G+  +A A   K+ GG  V S + E+      D     +F +LL
Sbjct: 201 VCAFLIPESPRYLVAQGQGEKAAAILWKVEGG-DVPSRIEEIQATVSLDHKP--RFSDLL 257

Query: 283 YGRH--FRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLS---SGLANVFVGIANLLG 337
             R     +V+IG  L ALQQ  GIN IFY+SS +++S G +   S L  V  G  N+L 
Sbjct: 258 SRRGGLLPIVWIGMGLSALQQFVGINVIFYYSSVLWRSVGFTEEKSLLITVITGFINILT 317

Query: 338 SVVAMVLMDKLGRKALLQWSFFSMAVSMAI--QVAASSSYIPGSASLYLSVGGMLM---- 391
           ++VA+  +DK GRK LL      M +++ I   V   ++ + G  +L  + G + +    
Sbjct: 318 TLVAIAFVDKFGRKPLLLMGSIGMTITLGILSVVFGGATVVNGQPTLTGAAGIIALVTAN 377

Query: 392 -FVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQL 450
            +V +F    GP+  +LL E+F ++IRA A++V   V W+ NF +   F  LL+ +G   
Sbjct: 378 LYVFSFGFSWGPIVWVLLGEMFNNKIRAAALSVAAGVQWIANFIISTTFPPLLDTVGLGP 437

Query: 451 LYSIFGTFCLMAVAFVKRNVVETKGKSLQEI 481
            Y ++ T   +++ F+   V ETKGK+L+++
Sbjct: 438 AYGLYATSAAISIFFIWFFVKETKGKTLEQM 468

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

>sp|Q3ECP7|ERDL5_ARATH Sugar transporter ERD6-like 5 OS=Arabidopsis thaliana GN=At1g54730 PE=2 SV=2

 Score =  185 bits (469), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 138/447 (30%), Positives = 232/447 (51%), Gaps = 33/447 (7%)

Query: 54  LVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIAD 113
            VA   SF+FG  +G  + P++S  L    N +     L  S+   GA IG+ +SG IAD
Sbjct: 37  FVAVSGSFVFGSAIGY-SSPVQS-DLTKELNLSVAEYSLFGSILTIGAMIGAAMSGRIAD 94

Query: 114 GVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPF 173
            +GRR       +  I+G      ++  I + +GRF+VG GMG+   V  +Y+ E++P  
Sbjct: 95  MIGRRATMGFSEMFCILGWLAIYLSKVAIWLDVGRFLVGYGMGVFSFVVPVYIAEITPKG 154

Query: 174 VRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPH 233
           +RG +    Q+  CLG+  + L+G  +      WRI   + ++P  +  + +    ESP 
Sbjct: 155 LRGGFTTVHQLLICLGVSVTYLLGSFIG-----WRILALIGMIPCVVQMMGLFVIPESPR 209

Query: 234 WLYKKGRTAEAEAEFEKLLGGS--------HVKSSLAELSKLDRGDDGDIVKFEELLYGR 285
           WL K G+  E E   ++L G S         +K     L+ L    +G IV   +L   +
Sbjct: 210 WLAKVGKWEEFEIALQRLRGESADISYESNEIKDYTRRLTDL---SEGSIV---DLFQPQ 263

Query: 286 HFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLM 345
           + + + +G  L  LQQ  G+N I +++SS+F+SAG+SS +  + + +  +  + + ++LM
Sbjct: 264 YAKSLVVGVGLMVLQQFGGVNGIAFYASSIFESAGVSSKIGMIAMVVVQIPMTTLGVLLM 323

Query: 346 DKLGRKALLQWS-------FFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFAL 398
           DK GR+ LL  S        F + +S ++Q     S   G AS YL++ G+L++  +F+L
Sbjct: 324 DKSGRRPLLLISATGTCIGCFLVGLSFSLQFVKQLS---GDAS-YLALTGVLVYTGSFSL 379

Query: 399 GAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTF 458
           G G +P +++ EIFP  I+  A ++   V WV ++ +   F   L    P   + +F T 
Sbjct: 380 GMGGIPWVIMSEIFPIDIKGSAGSLVTVVSWVGSWIISFTF-NFLMNWNPAGTFYVFATV 438

Query: 459 CLMAVAFVKRNVVETKGKSLQEIEIAL 485
           C   V FV + V ETKG++L+EI+ ++
Sbjct: 439 CGATVIFVAKLVPETKGRTLEEIQYSI 465

Sugar transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|P87110|ITR2_SCHPO Myo-inositol transporter 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=itr2 PE=2 SV=1

 Score =  184 bits (467), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 141/500 (28%), Positives = 242/500 (48%), Gaps = 46/500 (9%)

Query: 18  RDRSSTFDVEETTALVQNGTEVENTNPS-----------WKLSFPHVLVATLSSFLFGYH 66
           R+  S  + EE  A      EV + N             W LS     VA +S  LFGY 
Sbjct: 43  REIPSLPNEEEANATDPQANEVADENGEGFEAEKISSWIWVLS----AVAGISGLLFGYD 98

Query: 67  LGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCAL 126
            GV++  L  +  DLG   ++  + L+ S     A I +T SGW+AD VGR+R   LCA 
Sbjct: 99  TGVISGALAVLGSDLGHVLSSGQKELITSATSFAALISATTSGWLADWVGRKRLL-LCAD 157

Query: 127 PM-IIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIA 185
            + +IG+ I A +RN+  M++GRF+VG G+GL   +  +Y+TE++P  +RG       + 
Sbjct: 158 AIFVIGSVIMAASRNVAMMVVGRFIVGYGIGLTSLIVPMYITELAPARLRGRLVIIYVVF 217

Query: 186 TCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAE 245
              G + +  +    + +   WRI F +   PA    +++ +  ESP +L +     +  
Sbjct: 218 ITGGQLIAYSLNAAFEHVHQGWRIMFGIGAAPALGQLISLFWTPESPRYLLRHNHVEKV- 276

Query: 246 AEFEKLLGGSHVKSSLAELS-KLDRGDDGDIVKFEELLYGRHF--------------RVV 290
               K+L   H ++  AE++ K+    +G  V F E    +HF              R +
Sbjct: 277 ---YKILSRIHPEAKPAEIAYKVSLIQEGVKVDFPEGNKFQHFFHSLKVLFTVPSNRRSL 333

Query: 291 FIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLA-NVFVGIANLLGSVVAMVLMDKLG 349
           FIG  L   QQ SG NAI YFS+ +F+S G  + ++ ++ VG  N + ++VA + +D++G
Sbjct: 334 FIGCFLQWFQQFSGTNAIQYFSAIIFQSVGFKNSISVSIVVGATNFVFTIVAFMFIDRIG 393

Query: 350 RKALLQWSFFSMAVSMAIQVAASSSYIPGSAS-------LYLSVGGMLMFVLTFALGAGP 402
           R+ +L  +   M   +A+  A +  ++P   +        Y+ +  +++F+ ++A G G 
Sbjct: 394 RRRILLCTSAVMIAGLAL-CAIAYHFLPADTTQNTNSGWQYVVLASIIIFLASYASGIGN 452

Query: 403 VPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMA 462
           +P     E+FP  +RA       +++WV N  +   FL ++E + P   +++F  FC + 
Sbjct: 453 IP-WQQAELFPMEVRALGAGFSTAINWVGNLIISASFLTMMESITPTGTFALFAGFCFVG 511

Query: 463 VAFVKRNVVETKGKSLQEIE 482
           +        E  G S++ I 
Sbjct: 512 LVTSYFTYPELAGMSIENIH 531

Transporter for myo-inositol.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	489
27261731	489	sugar transporter [Citrus unshiu]	1.0	1.0	1.0	0.0
225445194	488	PREDICTED: probable plastidic glucose tr	0.997	1.0	0.807	0.0
255546433	508	sugar transporter, putative [Ricinus com	1.0	0.962	0.789	0.0
224142161	489	predicted protein [Populus trichocarpa]	1.0	1.0	0.803	0.0
449449521	490	PREDICTED: probable plastidic glucose tr	1.0	0.997	0.783	0.0
357500677	490	Sugar transporter [Medicago truncatula]	1.0	0.997	0.767	0.0
356520521	486	PREDICTED: probable plastidic glucose tr	0.983	0.989	0.775	0.0
356531285	486	PREDICTED: probable plastidic glucose tr	0.983	0.989	0.773	0.0
224054374	489	predicted protein [Populus trichocarpa]	1.0	1.0	0.730	0.0
15220399	493	putative plastidic glucose transporter 2	0.997	0.989	0.747	0.0

>gi|27261731|gb|AAN86062.1| sugar transporter [Citrus unshiu]

 Score =  984 bits (2545), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 489/489 (100%), Positives = 489/489 (100%)

Query: 1   MWGRQREASMMYKRTSSRDRSSTFDVEETTALVQNGTEVENTNPSWKLSFPHVLVATLSS 60
           MWGRQREASMMYKRTSSRDRSSTFDVEETTALVQNGTEVENTNPSWKLSFPHVLVATLSS
Sbjct: 1   MWGRQREASMMYKRTSSRDRSSTFDVEETTALVQNGTEVENTNPSWKLSFPHVLVATLSS 60

Query: 61  FLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRA 120
           FLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRA
Sbjct: 61  FLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRA 120

Query: 121 FQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGA 180
           FQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGA
Sbjct: 121 FQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGA 180

Query: 181 FIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGR 240
           FIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGR
Sbjct: 181 FIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGR 240

Query: 241 TAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQ 300
           TAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQ
Sbjct: 241 TAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQ 300

Query: 301 QLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFS 360
           QLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFS
Sbjct: 301 QLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFS 360

Query: 361 MAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKA 420
           MAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKA
Sbjct: 361 MAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKA 420

Query: 421 MAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNVVETKGKSLQE 480
           MAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNVVETKGKSLQE
Sbjct: 421 MAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNVVETKGKSLQE 480

Query: 481 IEIALLPQE 489
           IEIALLPQE
Sbjct: 481 IEIALLPQE 489

Source: Citrus unshiu

Species: Citrus unshiu

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225445194|ref|XP_002284229.1| PREDICTED: probable plastidic glucose transporter 2 [Vitis vinifera] gi|297738801|emb|CBI28046.3| unnamed protein product [Vitis vinifera] gi|310877904|gb|ADP37183.1| putative monosaccharide transporter [Vitis vinifera]

 Score =  796 bits (2055), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/489 (80%), Positives = 441/489 (90%), Gaps = 1/489 (0%)

Query: 1   MWGRQREASMMYKRTSSRDRSSTFDVEETTALVQNGTEVENTNPSWKLSFPHVLVATLSS 60
           MWGRQ EAS+ YKR SSRD +   D+EE++AL QNG   E TNPSWKLS PH++VAT+SS
Sbjct: 1   MWGRQGEASVTYKRVSSRDNTKV-DMEESSALFQNGMGQEITNPSWKLSLPHIIVATISS 59

Query: 61  FLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRA 120
           FLFGYHLGVVNEPLE+I+LDLGF+GNTLAEGLVVS CLGGAFIGS  SGWIADG+GRRRA
Sbjct: 60  FLFGYHLGVVNEPLETIALDLGFSGNTLAEGLVVSTCLGGAFIGSLFSGWIADGIGRRRA 119

Query: 121 FQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGA 180
           FQLCALPMIIGAS+SATT++L GML+GRF+VGTGMG+GP VA+LYVTEVSP FVRGTYG+
Sbjct: 120 FQLCALPMIIGASVSATTKSLEGMLIGRFLVGTGMGVGPPVASLYVTEVSPAFVRGTYGS 179

Query: 181 FIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGR 240
           FIQ+ATCLGLMG+L IGIPVK I GWWRICFW++ VPA IL  AM+FCAESPHWLYKKGR
Sbjct: 180 FIQLATCLGLMGALFIGIPVKAIIGWWRICFWIATVPAGILAFAMMFCAESPHWLYKKGR 239

Query: 241 TAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQ 300
            AEAEAEFEKLLGGSHVK ++A+L K DRGD+ D VK  ELLYGRHFRVVFIGSTLFALQ
Sbjct: 240 IAEAEAEFEKLLGGSHVKFAMADLHKSDRGDETDAVKLSELLYGRHFRVVFIGSTLFALQ 299

Query: 301 QLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFS 360
           QLSGINA+FYFSS+VFKSAG+ S LANVFVGIANL GS+ AM+LMDKLGRKALL WSFF 
Sbjct: 300 QLSGINAVFYFSSTVFKSAGVPSDLANVFVGIANLSGSITAMILMDKLGRKALLVWSFFG 359

Query: 361 MAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKA 420
           MAV+M++QVA +SS+I GS +++LSV GML+FVLTFALGAGPVP LLLPEIFP+RIRAKA
Sbjct: 360 MAVAMSVQVAGASSFISGSGAVFLSVSGMLLFVLTFALGAGPVPGLLLPEIFPNRIRAKA 419

Query: 421 MAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNVVETKGKSLQE 480
           MAVCMSVHWVINFFVGLLFL LLEQLGPQLLYS+F TFCLMAV FVKRNVVETKG+SLQE
Sbjct: 420 MAVCMSVHWVINFFVGLLFLPLLEQLGPQLLYSMFCTFCLMAVVFVKRNVVETKGRSLQE 479

Query: 481 IEIALLPQE 489
           IEIALLPQE
Sbjct: 480 IEIALLPQE 488

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255546433|ref|XP_002514276.1| sugar transporter, putative [Ricinus communis] gi|223546732|gb|EEF48230.1| sugar transporter, putative [Ricinus communis]

 Score =  785 bits (2027), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/495 (78%), Positives = 435/495 (87%), Gaps = 6/495 (1%)

Query: 1   MWGRQREASMMYKRTSSRDRSSTFDVEETTALVQNGTEVENTNPSWKLSFPHVLVATLSS 60
           MWGRQRE+  MYKR  SRD +   D+E+ +AL+QN  + E TNPSW LSFPHV+ AT+SS
Sbjct: 14  MWGRQRESKSMYKRMPSRDYTKNSDIEDDSALIQNNMDAEVTNPSWSLSFPHVVAATISS 73

Query: 61  FLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRA 120
           FLFGYHLGVVNEPLESIS+DLGFNGNTLAEGLVVS CLGGAFIGS  SGWIADGVGRRRA
Sbjct: 74  FLFGYHLGVVNEPLESISIDLGFNGNTLAEGLVVSTCLGGAFIGSLFSGWIADGVGRRRA 133

Query: 121 FQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGA 180
           FQLCALPMIIGAS+SATT  L GML+GRF+VGTGMGLGP VAALYVTEVSP FVRGTYG+
Sbjct: 134 FQLCALPMIIGASVSATTTTLAGMLVGRFLVGTGMGLGPPVAALYVTEVSPAFVRGTYGS 193

Query: 181 FIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGR 240
           FIQIATCLGLMG+L IGIPV+EI GWWRICFWVS +PA +L LAMVFC ESPHWLYK+GR
Sbjct: 194 FIQIATCLGLMGALFIGIPVREINGWWRICFWVSAIPAGLLALAMVFCVESPHWLYKQGR 253

Query: 241 TAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQ 300
           +AEAE EFE+LLGG+HV+ ++ ELSK+DRGD+ D +   ELLYGRHFRVVFIGSTLFALQ
Sbjct: 254 SAEAEIEFERLLGGAHVRYAIQELSKVDRGDNIDNITLSELLYGRHFRVVFIGSTLFALQ 313

Query: 301 QLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFS 360
           QLSGINA+FYFSS+VFKSAG+ S LANVFVGIANL GS+ AMVLMD+LGRK LL WSFF 
Sbjct: 314 QLSGINAVFYFSSTVFKSAGVPSDLANVFVGIANLTGSLAAMVLMDRLGRKVLLLWSFFG 373

Query: 361 MAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKA 420
           MAVSM +QVA +SSY+ GS +L+LSVGGML FV TFALGAGPVP LLLPEIFPSRIRAKA
Sbjct: 374 MAVSMGLQVAGASSYMAGSGALFLSVGGMLTFVFTFALGAGPVPGLLLPEIFPSRIRAKA 433

Query: 421 MAVCMSVHW------VINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNVVETK 474
           MA+CMSVHW      VINFFVGLLFLRLLEQLGPQLLY+IF + C++AV FVKRNV+ETK
Sbjct: 434 MAICMSVHWPISPSQVINFFVGLLFLRLLEQLGPQLLYAIFASSCMLAVVFVKRNVMETK 493

Query: 475 GKSLQEIEIALLPQE 489
           GKSLQEIEIALLPQE
Sbjct: 494 GKSLQEIEIALLPQE 508

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142161|ref|XP_002324427.1| predicted protein [Populus trichocarpa] gi|222865861|gb|EEF02992.1| predicted protein [Populus trichocarpa]

 Score =  777 bits (2006), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 393/489 (80%), Positives = 432/489 (88%)

Query: 1   MWGRQREASMMYKRTSSRDRSSTFDVEETTALVQNGTEVENTNPSWKLSFPHVLVATLSS 60
           M G +     MYKR SSRD +   DVE+ + + Q+  + E TNPSW+LSFPHVL AT+S+
Sbjct: 1   MRGHRTGEYSMYKRMSSRDFTVAADVEDNSVVSQSIPDQEITNPSWRLSFPHVLAATISA 60

Query: 61  FLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRA 120
           FLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVS CLGGA IGS  SGWIADG+GRRRA
Sbjct: 61  FLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSTCLGGALIGSLFSGWIADGIGRRRA 120

Query: 121 FQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGA 180
           FQLCALPMI+GASISATT+ L GMLLGR +VGTGMGLGP V++LYVTEVSP FVRGTYG+
Sbjct: 121 FQLCALPMIVGASISATTKTLAGMLLGRLLVGTGMGLGPPVSSLYVTEVSPSFVRGTYGS 180

Query: 181 FIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGR 240
           FIQIATCLGLM +L IGIPV+EIAGWWRICFWVS VPA IL L+M+FCAESPHWLYK+GR
Sbjct: 181 FIQIATCLGLMAALFIGIPVREIAGWWRICFWVSTVPAGILALSMMFCAESPHWLYKQGR 240

Query: 241 TAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQ 300
           TAEAEAEFE+LLGG+HVK ++ ELSKLDRGDD D V F ELLYGR FRVVFIGSTLFALQ
Sbjct: 241 TAEAEAEFERLLGGAHVKFAMQELSKLDRGDDSDDVHFSELLYGRCFRVVFIGSTLFALQ 300

Query: 301 QLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFS 360
           QLSGINAIFYFSS+VFK+AG+ S LANVFVGIANL GSV+AMVLMDK+GRK LL WSF  
Sbjct: 301 QLSGINAIFYFSSTVFKNAGVPSDLANVFVGIANLSGSVIAMVLMDKMGRKVLLLWSFSG 360

Query: 361 MAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKA 420
           MAVSM +QV A+SS + GS +LYLSVGGMLMFV TFA+GAGPVP LLLPEIFPSRIRAKA
Sbjct: 361 MAVSMGLQVVAASSNMLGSGTLYLSVGGMLMFVFTFAIGAGPVPGLLLPEIFPSRIRAKA 420

Query: 421 MAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNVVETKGKSLQE 480
           MAVCMSVHWVINFFVGLLFLRLLEQLGP+LLY+IFGTFCLMAV FVKRNV+ETKGKSLQE
Sbjct: 421 MAVCMSVHWVINFFVGLLFLRLLEQLGPRLLYTIFGTFCLMAVVFVKRNVMETKGKSLQE 480

Query: 481 IEIALLPQE 489
           IEIALLP E
Sbjct: 481 IEIALLPPE 489

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449449521|ref|XP_004142513.1| PREDICTED: probable plastidic glucose transporter 2-like [Cucumis sativus] gi|449522117|ref|XP_004168074.1| PREDICTED: probable plastidic glucose transporter 2-like [Cucumis sativus]

 Score =  767 bits (1980), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 383/489 (78%), Positives = 426/489 (87%)

Query: 1   MWGRQREASMMYKRTSSRDRSSTFDVEETTALVQNGTEVENTNPSWKLSFPHVLVATLSS 60
           MW R+REA   YKR S +D S + D+E+ +A +QNG + E +NPSW LS PHVLVATL+S
Sbjct: 1   MWDRKREAFSTYKRLSLKDNSDSIDMEDNSAHLQNGKDFEASNPSWSLSLPHVLVATLTS 60

Query: 61  FLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRA 120
           FLFGYHLGVVNEPLE IS DLGFNGNT+AEGLVVS CLGGA IGS LSGWIADGVGRRRA
Sbjct: 61  FLFGYHLGVVNEPLEIISADLGFNGNTMAEGLVVSTCLGGALIGSLLSGWIADGVGRRRA 120

Query: 121 FQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGA 180
           FQL ALPMI+GA +SA T+ L GMLLGR  VGTGMGLGP VA+LYVTE+SP FVRGTYG+
Sbjct: 121 FQLSALPMILGAGMSAMTKTLAGMLLGRLFVGTGMGLGPPVASLYVTEISPAFVRGTYGS 180

Query: 181 FIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGR 240
           FIQIATCLGLM +LLIGIPVK+IA WWR CFWVS +PAA+L LAMVFCAESPHWLYK+GR
Sbjct: 181 FIQIATCLGLMAALLIGIPVKDIADWWRTCFWVSTIPAALLALAMVFCAESPHWLYKQGR 240

Query: 241 TAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQ 300
           T EAE EFEKLLGGSHVKS+LAELSK DRGD+ D VK  ELL+GRHF+VVFIGSTLFALQ
Sbjct: 241 TEEAETEFEKLLGGSHVKSALAELSKFDRGDEPDDVKLSELLFGRHFQVVFIGSTLFALQ 300

Query: 301 QLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFS 360
           QLSGINAIFYFSS+VFKS G+ S LANV VG++NL GS+VAM+LMD+LGRK LL WSF  
Sbjct: 301 QLSGINAIFYFSSTVFKSVGVPSNLANVCVGLSNLAGSIVAMLLMDRLGRKLLLLWSFSG 360

Query: 361 MAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKA 420
           MAV+MA+QV A S +   S +LYLSVGG LMFVL FALGAGPVP LLLPEIFPSRIRAKA
Sbjct: 361 MAVAMAVQVVAGSYHYSDSGALYLSVGGTLMFVLMFALGAGPVPGLLLPEIFPSRIRAKA 420

Query: 421 MAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNVVETKGKSLQE 480
           MA+CMSVHWVINFFVGLLFL+LLE++GPQLLYS F TFCL+AVAFVKRNVVETKGKSLQE
Sbjct: 421 MAICMSVHWVINFFVGLLFLQLLEKMGPQLLYSGFATFCLIAVAFVKRNVVETKGKSLQE 480

Query: 481 IEIALLPQE 489
           IEIALLPQ+
Sbjct: 481 IEIALLPQD 489

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357500677|ref|XP_003620627.1| Sugar transporter [Medicago truncatula] gi|355495642|gb|AES76845.1| Sugar transporter [Medicago truncatula]

 Score =  755 bits (1949), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/490 (76%), Positives = 424/490 (86%), Gaps = 1/490 (0%)

Query: 1   MWGRQREASMMYKRTSSRDRSS-TFDVEETTALVQNGTEVENTNPSWKLSFPHVLVATLS 59
           MWG  RE+S++YKRT S+D S+   DVEE   L+ N  + E TNPSWKLS PHVLVAT++
Sbjct: 1   MWGHHRESSIVYKRTPSKDNSNMEEDVEENLDLLDNFIDKETTNPSWKLSLPHVLVATIT 60

Query: 60  SFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRR 119
           SFLFGYHLGVVNEPLESIS+DLGFNGNTLAEGLVVS+CLGGA  G  LSGWIAD VGRRR
Sbjct: 61  SFLFGYHLGVVNEPLESISVDLGFNGNTLAEGLVVSICLGGALFGCLLSGWIADAVGRRR 120

Query: 120 AFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYG 179
           AFQLCALPMIIGA++SA T NL GML+GR  VGTG+GLGP VAALYVTEVSP FVRGTYG
Sbjct: 121 AFQLCALPMIIGAAMSAATNNLFGMLVGRLFVGTGLGLGPPVAALYVTEVSPAFVRGTYG 180

Query: 180 AFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKG 239
           A IQIATC G++GSL IGIPVKEI+GWWR+CFWVS +PAAIL LAMVFCAESPHWLYK+G
Sbjct: 181 ALIQIATCFGILGSLFIGIPVKEISGWWRVCFWVSTIPAAILALAMVFCAESPHWLYKQG 240

Query: 240 RTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFAL 299
           RTAEAEAEFE+LLG S  K ++++LSK+DRG+D D VKF ELL+G H +VVFIGSTLFAL
Sbjct: 241 RTAEAEAEFERLLGVSEAKFAMSQLSKVDRGEDTDTVKFSELLHGHHSKVVFIGSTLFAL 300

Query: 300 QQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFF 359
           QQLSGINA+FYFSS+VFKSAG+ S  ANV +G+ANL GS+++  LMDKLGRK LL WSFF
Sbjct: 301 QQLSGINAVFYFSSTVFKSAGVPSDFANVCIGVANLTGSIISTGLMDKLGRKVLLFWSFF 360

Query: 360 SMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAK 419
            MA+SM IQ   +S+ +P + +LYLSVGGML+FV TFALGAGPVP LLL EIFPSRIRAK
Sbjct: 361 GMAISMIIQATGASTLLPTAGALYLSVGGMLLFVFTFALGAGPVPGLLLTEIFPSRIRAK 420

Query: 420 AMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNVVETKGKSLQ 479
           AMA CMSVHWVINFFVGLLFLRLLE+LG QLLYS+F TFC+MAV FVKRNVVETKGKSLQ
Sbjct: 421 AMAFCMSVHWVINFFVGLLFLRLLEKLGAQLLYSMFATFCIMAVIFVKRNVVETKGKSLQ 480

Query: 480 EIEIALLPQE 489
           EIEIALLPQE
Sbjct: 481 EIEIALLPQE 490

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356520521|ref|XP_003528910.1| PREDICTED: probable plastidic glucose transporter 2-like [Glycine max]

 Score =  741 bits (1913), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/481 (77%), Positives = 416/481 (86%)

Query: 9   SMMYKRTSSRDRSSTFDVEETTALVQNGTEVENTNPSWKLSFPHVLVATLSSFLFGYHLG 68
           S MYKRT SRD S+  DVEE + L+  G +   +NPS  LS PHVLVAT+SSFLFGYHLG
Sbjct: 6   SSMYKRTPSRDNSNMEDVEENSDLLDIGLDKGTSNPSLMLSLPHVLVATISSFLFGYHLG 65

Query: 69  VVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPM 128
           VVNEPLESIS+DLGF GNTLAEGLVVS+CLGGA IG  LSGWIADGVGRRRAFQLCALPM
Sbjct: 66  VVNEPLESISVDLGFRGNTLAEGLVVSICLGGALIGCLLSGWIADGVGRRRAFQLCALPM 125

Query: 129 IIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCL 188
           IIGAS+SA T NL GML+GR  VGTG+GLGP VA+LYVTEVSP FVRGT+GAFIQIATCL
Sbjct: 126 IIGASMSAATNNLFGMLVGRLFVGTGLGLGPPVASLYVTEVSPAFVRGTFGAFIQIATCL 185

Query: 189 GLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEF 248
           GLMG+L IGIPVKEI+GWWR+CFWVS +PAAIL  AMVFCAESPHWLYK+GRTAEAEAEF
Sbjct: 186 GLMGALFIGIPVKEISGWWRVCFWVSTIPAAILATAMVFCAESPHWLYKQGRTAEAEAEF 245

Query: 249 EKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAI 308
           E+LLG S  K +++ELSK DRGDD D VK  ELL+GRH +VVFIGSTLFALQQLSGINA+
Sbjct: 246 ERLLGVSEAKFAMSELSKADRGDDSDSVKLSELLHGRHSKVVFIGSTLFALQQLSGINAV 305

Query: 309 FYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQ 368
           FYFSS+VFKSAG+ S +ANV +GIANL GS+V+M LMDKLGRK LL WSFF MA++M +Q
Sbjct: 306 FYFSSTVFKSAGVPSDIANVCIGIANLAGSIVSMGLMDKLGRKVLLFWSFFGMAIAMILQ 365

Query: 369 VAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVH 428
              ++S +    + Y SVGGM +FVLTFALGAGPVP LLLPEIFPSRIRAKAMAVCMSVH
Sbjct: 366 ATGATSLVSNMGAQYFSVGGMFLFVLTFALGAGPVPGLLLPEIFPSRIRAKAMAVCMSVH 425

Query: 429 WVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNVVETKGKSLQEIEIALLPQ 488
           WVINFFVGLLFLRLLE+LGPQLLYS+F TFC+MAV FVKRNVVETKGKSL EIEIALLPQ
Sbjct: 426 WVINFFVGLLFLRLLEKLGPQLLYSMFATFCIMAVIFVKRNVVETKGKSLHEIEIALLPQ 485

Query: 489 E 489
           +
Sbjct: 486 D 486

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356531285|ref|XP_003534208.1| PREDICTED: probable plastidic glucose transporter 2-like isoform 1 [Glycine max]

 Score =  741 bits (1912), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/481 (77%), Positives = 417/481 (86%)

Query: 9   SMMYKRTSSRDRSSTFDVEETTALVQNGTEVENTNPSWKLSFPHVLVATLSSFLFGYHLG 68
           S MYKRT SRD S+  D+EE + L+  G +   +NPS  LS PHVLVAT+SSFLFGYHLG
Sbjct: 6   SSMYKRTPSRDNSNMEDMEENSDLLDIGLDKGTSNPSLMLSLPHVLVATISSFLFGYHLG 65

Query: 69  VVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPM 128
           VVNEPLESIS+DLGF GNTLAEGLVVS+CLGGA IG  LSGWIADGVGRRRAFQLCALPM
Sbjct: 66  VVNEPLESISVDLGFRGNTLAEGLVVSICLGGALIGCLLSGWIADGVGRRRAFQLCALPM 125

Query: 129 IIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCL 188
           IIGAS+SA T NL GML+GR  VGTG+GLGP VA+LYVTEVSP FVRGT+GAFIQIATCL
Sbjct: 126 IIGASMSAATNNLFGMLVGRLFVGTGLGLGPPVASLYVTEVSPAFVRGTFGAFIQIATCL 185

Query: 189 GLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEF 248
           GLMG+L IGIPVKEI+GWWR+CFWVS +PAAIL  AMVFCAESPHWLYK+GRTAEAEAEF
Sbjct: 186 GLMGALFIGIPVKEISGWWRVCFWVSTIPAAILAAAMVFCAESPHWLYKQGRTAEAEAEF 245

Query: 249 EKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAI 308
           E+LLG S  K +++ELSK+DRGDD D VK  ELL+GRH +VVFIGSTLFALQQLSGINA+
Sbjct: 246 ERLLGVSEAKFAMSELSKVDRGDDTDTVKLSELLHGRHSKVVFIGSTLFALQQLSGINAV 305

Query: 309 FYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQ 368
           FYFSS+VFKSAG+ S +ANV +GIANL GS+V+M LMDKLGRK LL WSFF MA++M +Q
Sbjct: 306 FYFSSTVFKSAGVPSDIANVCIGIANLAGSIVSMGLMDKLGRKVLLFWSFFGMAIAMILQ 365

Query: 369 VAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVH 428
              ++S +    + Y SVGGML+FVLTFALGAGPVP LLLPEIFPSRIRAKAMAVCMSVH
Sbjct: 366 ATGATSLVSNVGAQYFSVGGMLLFVLTFALGAGPVPGLLLPEIFPSRIRAKAMAVCMSVH 425

Query: 429 WVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNVVETKGKSLQEIEIALLPQ 488
           WVINFFVGLLFLRLLE+LGPQLLYS+F  FC+MAV FVKRNVVETKGKSL EIEIALLPQ
Sbjct: 426 WVINFFVGLLFLRLLEKLGPQLLYSMFAIFCIMAVTFVKRNVVETKGKSLHEIEIALLPQ 485

Query: 489 E 489
           +
Sbjct: 486 D 486

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224054374|ref|XP_002298228.1| predicted protein [Populus trichocarpa] gi|222845486|gb|EEE83033.1| predicted protein [Populus trichocarpa]

 Score =  736 bits (1899), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/489 (73%), Positives = 417/489 (85%)

Query: 1   MWGRQREASMMYKRTSSRDRSSTFDVEETTALVQNGTEVENTNPSWKLSFPHVLVATLSS 60
           M GR  E  +  KR SSRD  + +D EE++  +  GT  +  NP W+ S  HVLVATLSS
Sbjct: 1   MRGRYVETVVTKKRASSRDFINAYDREESSGHLAIGTAKDAGNPHWRHSLVHVLVATLSS 60

Query: 61  FLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRA 120
           FLFGYHLGVVNE LE+IS DLGF+GNT+AEGLVVS CLGGAF+GS  SGWIADGVGRRRA
Sbjct: 61  FLFGYHLGVVNETLETISFDLGFSGNTMAEGLVVSTCLGGAFVGSIFSGWIADGVGRRRA 120

Query: 121 FQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGA 180
           FQLCALPMIIGAS+SATT++L GMLLGRF VGTGMG+GP VAALYVTEVSP +VRGTYG+
Sbjct: 121 FQLCALPMIIGASMSATTKDLWGMLLGRFFVGTGMGIGPPVAALYVTEVSPAYVRGTYGS 180

Query: 181 FIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGR 240
             QI+TCLGL+GS +IGIP KE  GWWRICFWVS +PAA+L L M FCAESPHWL K+GR
Sbjct: 181 LTQISTCLGLLGSFVIGIPAKETMGWWRICFWVSAIPAAMLALFMEFCAESPHWLLKRGR 240

Query: 241 TAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQ 300
           + EAEA+FEKLLGGSHVKS++ ELSK DRGD+ D VK  E LYGR+F+VVFIGS LFALQ
Sbjct: 241 STEAEAQFEKLLGGSHVKSAIIELSKSDRGDEVDKVKLSEFLYGRYFKVVFIGSALFALQ 300

Query: 301 QLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFS 360
           QLSGINA+FYFSS+VFKSAG+ S  AN+ VG++NLLGS++AMV+MDKLGRK LL  SFF 
Sbjct: 301 QLSGINAVFYFSSAVFKSAGVPSDSANICVGVSNLLGSIIAMVMMDKLGRKVLLTGSFFG 360

Query: 361 MAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKA 420
           MAVSM +Q  A++S++   A+LYLSVGGML+FVL F+LGAGPVPSLLL EIFPSRIRAKA
Sbjct: 361 MAVSMGLQATAATSFVSSFAALYLSVGGMLLFVLMFSLGAGPVPSLLLSEIFPSRIRAKA 420

Query: 421 MAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNVVETKGKSLQE 480
           +A+CM+VHWVINFFVGLLFLRLLEQ+GP +LY++FG+FCL+AV FVK+NV+ETKGKSLQE
Sbjct: 421 LAICMAVHWVINFFVGLLFLRLLEQIGPLVLYTVFGSFCLVAVFFVKKNVLETKGKSLQE 480

Query: 481 IEIALLPQE 489
           IEIAL+P E
Sbjct: 481 IEIALMPPE 489

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15220399|ref|NP_176898.1| putative plastidic glucose transporter 2 [Arabidopsis thaliana] gi|75334518|sp|Q9FYG3.1|PLST2_ARATH RecName: Full=Probable plastidic glucose transporter 2 gi|9828628|gb|AAG00251.1|AC002130_16 F1N21.12 [Arabidopsis thaliana] gi|110742090|dbj|BAE98976.1| transport protein like protein [Arabidopsis thaliana] gi|332196504|gb|AEE34625.1| putative plastidic glucose transporter 2 [Arabidopsis thaliana]

 Score =  731 bits (1888), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/492 (74%), Positives = 424/492 (86%), Gaps = 4/492 (0%)

Query: 1   MWGRQREASMMYKRTSSRDRSSTFDVEETTALVQNG--TEVENTNPSWKLSFPHVLVATL 58
           M G QRE S MYKRTSSRD S   DVE+++ L++N    E+E TNPSWK S PHVLVAT+
Sbjct: 1   MLGLQRETSSMYKRTSSRDYSPMIDVEDSSGLLENDVDNEMETTNPSWKCSLPHVLVATI 60

Query: 59  SSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRR 118
           SSFLFGYHLGVVNEPLESIS DLGF+G+TLAEGLVVS+CLGGAF+GS  SG +ADG GRR
Sbjct: 61  SSFLFGYHLGVVNEPLESISSDLGFSGDTLAEGLVVSVCLGGAFLGSLFSGGVADGFGRR 120

Query: 119 RAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTY 178
           RAFQ+CALPMI+GA +S  + +L  MLLGRF+VGTGMGLGP VAALYVTEVSP FVRGTY
Sbjct: 121 RAFQICALPMILGAFVSGVSNSLAVMLLGRFLVGTGMGLGPPVAALYVTEVSPAFVRGTY 180

Query: 179 GAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKK 238
           G+FIQIATCLGLM +L IGIPV  I GWWR+CFW+S +PAA+L L M  CAESP WL+K+
Sbjct: 181 GSFIQIATCLGLMAALFIGIPVHNITGWWRVCFWLSTIPAALLALGMFLCAESPQWLFKQ 240

Query: 239 GRTAEAEAEFEKLLGGSHVKSSLAELSK--LDRGDDGDIVKFEELLYGRHFRVVFIGSTL 296
           G+ AEAEAEFE+LLGGSHVK+++AEL K  LD+ D+ D+V   ELLYGRH RVVFIGSTL
Sbjct: 241 GKIAEAEAEFERLLGGSHVKTAMAELYKLDLDKTDEPDVVSLSELLYGRHSRVVFIGSTL 300

Query: 297 FALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQW 356
           FALQQLSGINA+FYFSS+VFKSAG+ S L N+FVG++NLLGSV+AMVLMDK+GRK LL W
Sbjct: 301 FALQQLSGINAVFYFSSTVFKSAGVPSDLGNIFVGVSNLLGSVIAMVLMDKVGRKLLLLW 360

Query: 357 SFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRI 416
           SF  MA +MA+QV A+SSY+P  ++L LSVGG L+FVLTFALGAGPVP LLLPEIFPSRI
Sbjct: 361 SFIGMAAAMALQVGATSSYLPHFSALCLSVGGTLVFVLTFALGAGPVPGLLLPEIFPSRI 420

Query: 417 RAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNVVETKGK 476
           RAKAMA CMSVHWVINFFVGLLFLRLLE+LGP+LLYS+F TFCLMAV FVKRNV+ETKGK
Sbjct: 421 RAKAMAFCMSVHWVINFFVGLLFLRLLEKLGPRLLYSMFSTFCLMAVMFVKRNVIETKGK 480

Query: 477 SLQEIEIALLPQ 488
           +LQEIEI+LL +
Sbjct: 481 TLQEIEISLLAK 492

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	489
TAIR|locus:2019554	494	AT1G67300 [Arabidopsis thalian	0.993	0.983	0.708	1.1e-183
TAIR|locus:2017899	495	SGB1 "SUPPRESSOR OF G PROTEIN	0.944	0.933	0.681	2.3e-165
TAIR|locus:2205548	524	AT1G05030 [Arabidopsis thalian	0.899	0.839	0.436	3.2e-97
TAIR|locus:2181422	546	PGLCT "plastidic GLC transloca	0.889	0.796	0.431	3e-94
DICTYBASE|DDB_G0278261	630	DDB_G0278261 "solute carrier f	0.928	0.720	0.308	1.3e-54
TAIR|locus:2025132	487	ERDL6 "ERD6-like 6" [Arabidops	0.860	0.864	0.303	1.7e-52
TAIR|locus:2016407	488	AT1G19450 [Arabidopsis thalian	0.858	0.860	0.307	2.7e-52
TIGR_CMR|CBU_0347	463	CBU_0347 "d-xylose-proton symp	0.895	0.946	0.292	8.3e-51
TAIR|locus:2009832	580	INT2 "inositol transporter 2"	0.680	0.574	0.303	2.3e-50
ZFIN|ZDB-GENE-030829-25	498	slc2a8 "solute carrier family	0.631	0.620	0.291	6.8e-49

TAIR|locus:2019554 AT1G67300 [Arabidopsis thaliana (taxid:3702)]

 Score = 1782 (632.4 bits), Expect = 1.1e-183, P = 1.1e-183
 Identities = 348/491 (70%), Positives = 400/491 (81%)

Query:     1 MWGRQREASMMYKXXXXXXXXXXFDVEETTALVQNGT--EVENTNPSWKLSFPHVLVATL 58
             M G QRE S MYK           DVE+++ L++N    E+E TNPSWK S PHVLVAT+
Sbjct:     1 MLGLQRETSSMYKRTSSRDYSPMIDVEDSSGLLENDVDNEMETTNPSWKCSLPHVLVATI 60

Query:    59 SSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRR 118
             SSFLFGYHLGVVNEPLESIS DLGF+G+TLAEGLVVS+CLGGAF+GS  SG +ADG GRR
Sbjct:    61 SSFLFGYHLGVVNEPLESISSDLGFSGDTLAEGLVVSVCLGGAFLGSLFSGGVADGFGRR 120

Query:   119 RAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTY 178
             RAFQ+CALPMI+GA +S  + +L  MLLGRF+VGTGMGLGP VAALYVTEVSP FVRGTY
Sbjct:   121 RAFQICALPMILGAFVSGVSNSLAVMLLGRFLVGTGMGLGPPVAALYVTEVSPAFVRGTY 180

Query:   179 GAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKK 238
             G+FIQIATCLGLM +L IGIPV  I GWWR+CFW+S +PAA+L L M  CAESP WL+K+
Sbjct:   181 GSFIQIATCLGLMAALFIGIPVHNITGWWRVCFWLSTIPAALLALGMFLCAESPQWLFKQ 240

Query:   239 GRTAEAEAEFEKLLGGSHVKSSLAELSKLD--RGDDGDIVKFEELLYGRHFRVVFIGSTL 296
             G+ AEAEAEFE+LLGGSHVK+++AEL KLD  + D+ D+V   ELLYGRH RVVFIGSTL
Sbjct:   241 GKIAEAEAEFERLLGGSHVKTAMAELYKLDLDKTDEPDVVSLSELLYGRHSRVVFIGSTL 300

Query:   297 FALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQW 356
             FALQQLSGINA+FYFSS+VFKSAG+ S L N+FVG++NLLGSV+AMVLMDK+GRK LL W
Sbjct:   301 FALQQLSGINAVFYFSSTVFKSAGVPSDLGNIFVGVSNLLGSVIAMVLMDKVGRKLLLLW 360

Query:   357 SFFSMAVS-MAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSR 415
             SF  M  S MA+QV A+SSY+P  ++L LSVGG L+FVLTFALGAGPVP LLLPEIFPSR
Sbjct:   361 SFIGMVCSAMALQVGATSSYLPHFSALCLSVGGTLVFVLTFALGAGPVPGLLLPEIFPSR 420

Query:   416 IRAKAMAVCMSVHWVINFFVGXXXXXXXXXXXXXXXYSIFGTFCLMAVAFVKRNVVETKG 475
             IRAKAMA CMSVHWVINFFVG               YS+F TFCLMAV FVKRNV+ETKG
Sbjct:   421 IRAKAMAFCMSVHWVINFFVGLLFLRLLEKLGPRLLYSMFSTFCLMAVMFVKRNVIETKG 480

Query:   476 KSLQEIEIALL 486
             K+LQEIEI+LL
Sbjct:   481 KTLQEIEISLL 491

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2017899 SGB1 "SUPPRESSOR OF G PROTEIN BETA1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1609 (571.5 bits), Expect = 2.3e-165, P = 2.3e-165
 Identities = 315/462 (68%), Positives = 369/462 (79%)

Query:    25 DVEETTALVQNGTEVENTNPSWKLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFN 84
             D  ET   +  GT  +  NPSWK S PHVLVA+L+S LFGYHLGVVNE LESIS+DLGF+
Sbjct:    30 DKAETAVRLPTGTGKDCGNPSWKRSLPHVLVASLTSLLFGYHLGVVNETLESISIDLGFS 89

Query:    85 GNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGM 144
             GNT+AEGLVVS CLGGAFIGS  SG +ADGVGRRRAFQL ALPMI+GAS+SA+T +L+GM
Sbjct:    90 GNTIAEGLVVSTCLGGAFIGSLFSGLVADGVGRRRAFQLSALPMIVGASVSASTESLMGM 149

Query:   145 LLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIA 204
             LLGRF+VG GMG+GP+V ALYVTEVSP +VRGTYG+  QIATC+GL+GSL  GIP K+  
Sbjct:   150 LLGRFLVGIGMGIGPSVTALYVTEVSPAYVRGTYGSSTQIATCIGLLGSLFAGIPAKDNL 209

Query:   205 GWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAEL 264
             GWWRICFW+S VPAA+L + M  C ESP WL+K+GR AEAEA FEKLLGGS+VK+++AEL
Sbjct:   210 GWWRICFWISTVPAAMLAVFMELCVESPQWLFKRGRAAEAEAVFEKLLGGSYVKAAMAEL 269

Query:   265 SKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSG 324
              K DRGDD D  K  ELL+GR FRVVFIGSTLFALQQLSGINA+FYFSS+VFK AG+ S 
Sbjct:   270 VKSDRGDDADSAKLSELLFGRSFRVVFIGSTLFALQQLSGINAVFYFSSTVFKKAGVPSA 329

Query:   325 LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYL 384
              AN+ VG+ NLLGS VA+VLMDKLGRK LL  SF  MAVS+ +Q  A +S      +L+L
Sbjct:   330 SANICVGVCNLLGSTVAVVLMDKLGRKVLLIGSFAGMAVSLGLQAIAYTSLPSPFGTLFL 389

Query:   385 SVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGXXXXXXXX 444
             SVGGML+FVL+FA GAGPVPSLLL EI P R+RA A+AVC++VHWVINFFVG        
Sbjct:   390 SVGGMLLFVLSFATGAGPVPSLLLSEICPGRLRATALAVCLAVHWVINFFVGLLFLRMLE 449

Query:   445 XXXXXXXYSIFGTFCLMAVAFVKRNVVETKGKSLQEIEIALL 486
                     +IFG FC++AV FV++NVVETKGKSLQEIEI+LL
Sbjct:   450 QLGSVLLNAIFGFFCVVAVIFVQKNVVETKGKSLQEIEISLL 491

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0006810 "transport" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009887 "organ morphogenesis" evidence=RCA

GO:0010051 "xylem and phloem pattern formation" evidence=RCA

GO:0048439 "flower morphogenesis" evidence=RCA

GO:0048519 "negative regulation of biological process" evidence=RCA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR|locus:2205548 AT1G05030 [Arabidopsis thaliana (taxid:3702)]

 Score = 966 (345.1 bits), Expect = 3.2e-97, P = 3.2e-97
 Identities = 193/442 (43%), Positives = 281/442 (63%)

Query:    46 WKLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGS 105
             W  +FPHV VA++++FLFGYH+GV+N P+ SI+ +LGF GN++ EGLVVS+ + GAFIGS
Sbjct:    76 WLSAFPHVSVASMANFLFGYHIGVMNGPIVSIARELGFEGNSILEGLVVSIFIAGAFIGS 135

Query:   106 TLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALY 165
              ++G + D  G RR FQ+  +P+I+GA +SA   +L  +L GRF+VG G+G+   +  +Y
Sbjct:   136 IVAGPLVDKFGYRRTFQIFTIPLILGALVSAQAHSLDEILCGRFLVGLGIGVNTVLVPIY 195

Query:   166 VTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAM 225
             ++EV+P   RG+ G   QI TCLG++ SLL+GIP ++   WWR   +V+ +P  +L L M
Sbjct:   196 ISEVAPTKYRGSLGTLCQIGTCLGIIFSLLLGIPAEDDPHWWRTMLYVASMPGFLLALGM 255

Query:   226 VFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDI-VKFEELLYG 284
              F  ESP WL K GR  +A+     + GGS V+ ++ +   + +    ++  ++ ELL  
Sbjct:   256 QFAVESPRWLCKVGRLDDAKVVIRNIWGGSEVEKAVEDFQSVMKNSGSNLNSRWLELLDK 315

Query:   285 RHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGL-ANVFVGIANLLGSVVAMV 343
              H RV FIG +LF LQQ +GIN + YFSS  F++ G++SG  A+++VG+ N  G++ A  
Sbjct:   316 PHSRVAFIGGSLFVLQQFAGINGVLYFSSLTFQNVGITSGAQASLYVGVTNFAGALCASY 375

Query:   344 LMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPV 403
             L+DK GRK LL  S+  MAVSM + V A    +    S  LS+ G LM++ +FA+GAGPV
Sbjct:   376 LIDKQGRKKLLIGSYLGMAVSMFLIVYAVGFPLDEDLSQSLSILGTLMYIFSFAIGAGPV 435

Query:   404 PSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGXXXXXXXXXXXXXXXYSIFGTFCLMAV 463
               L++PE+  +R R K M    SVHWV NF VG               Y+ FG+  L+A 
Sbjct:   436 TGLIIPELSSNRTRGKIMGFSFSVHWVSNFLVGLFFLDLVEKYGVGTVYASFGSVSLLAA 495

Query:   464 AFVKRNVVETKGKSLQEIEIAL 485
             AF     VETKG+SL+EIE++L
Sbjct:   496 AFSHLFTVETKGRSLEEIELSL 517

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2181422 PGLCT "plastidic GLC translocator" [Arabidopsis thaliana (taxid:3702)]

 Score = 938 (335.3 bits), Expect = 3.0e-94, P = 3.0e-94
 Identities = 188/436 (43%), Positives = 280/436 (64%)

Query:    51 PHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGW 110
             P V VA L + LFGYHLGVVN  LE ++ DLG   NT+ +G +VS  L GA +GS   G 
Sbjct:   107 PFVGVACLGAILFGYHLGVVNGALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGA 166

Query:   111 IADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVS 170
             +AD  GR R FQL A+P+ IGA + AT +++  M++GR + G G+G+   +  LY++E+S
Sbjct:   167 LADKFGRTRTFQLDAIPLAIGAFLCATAQSVQTMIVGRLLAGIGIGISSAIVPLYISEIS 226

Query:   171 PPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAE 230
             P  +RG  G+  Q+  C+G++ +L+ G+P+     WWR  F V+++P+ +L + M F  E
Sbjct:   227 PTEIRGALGSVNQLFICIGILAALIAGLPLAANPLWWRTMFGVAVIPSVLLAIGMAFSPE 286

Query:   231 SPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVV 290
             SP WL ++G+ +EAE   + L G   V   + +LS   +G       + +L   R+++VV
Sbjct:   287 SPRWLVQQGKVSEAEKAIKTLYGKERVVELVRDLSASGQGSSEPEAGWFDLFSSRYWKVV 346

Query:   291 FIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLA-NVFVGIANLLGSVVAMVLMDKLG 349
              +G+ LF  QQL+GINA+ Y+S+SVF+SAG+ S +A +  VG +N+ G+ VA  LMDK+G
Sbjct:   347 SVGAALFLFQQLAGINAVVYYSTSVFRSAGIQSDVAASALVGASNVFGTAVASSLMDKMG 406

Query:   350 RKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLP 409
             RK+LL  SF  MA+SM +   + +     + S  L+V G +++VL+F+LGAGPVP+LLLP
Sbjct:   407 RKSLLLTSFGGMALSMLLLSLSFTWKALAAYSGTLAVVGTVLYVLSFSLGAGPVPALLLP 466

Query:   410 EIFPSRIRAKAMAVCMSVHWVINFFVGXXXXXXXXXXXXXXXYSIFGTFCLMAVAFVKRN 469
             EIF SRIRAKA+A+ + +HW+ NF +G               Y  F   C++AV ++  N
Sbjct:   467 EIFASRIRAKAVALSLGMHWISNFVIGLYFLSVVTKFGISSVYLGFAGVCVLAVLYIAGN 526

Query:   470 VVETKGKSLQEIEIAL 485
             VVETKG+SL+EIE+AL
Sbjct:   527 VVETKGRSLEEIELAL 542

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

DICTYBASE|DDB_G0278261 DDB_G0278261 "solute carrier family 2 member protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 564 (203.6 bits), Expect = 1.3e-54, P = 1.3e-54
 Identities = 149/483 (30%), Positives = 240/483 (49%)

Query:    25 DVEETTALVQNGTEVENTNPSWKLSFP---HVLVATLSSFLFGYHLGVVNEPLESISLDL 81
             ++  TT   +N  E  N N + KLSF    +V  + LS+  FGY+ GV++  +  I    
Sbjct:   152 NISTTTITTRNNNENLNNNNNSKLSFFLIFNVSFSVLSTLQFGYNTGVISPTILDIQTIF 211

Query:    82 GFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNL 141
             G N N   + ++VS  L GA +GS LSG+  D  GR++      L  ++G  + +  +N 
Sbjct:   212 GLNVNE--KSMLVSSVLFGAMLGSFLSGFFVDIFGRKKTLLGNNLFYLLGPLLCSVGKNY 269

Query:   142 IGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVK 201
               +L+GR + G G+G+  +V  LY+TE+SPP  RG+ G   Q    LG+M S L    + 
Sbjct:   270 ATLLIGRLITGVGVGIASSVVPLYITEISPPSFRGSLGLLRQSTVTLGIMLSSLFAYGLL 329

Query:   202 EIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSL 261
               +  WR  F ++ +P+    +   +  ESP WL  K R  EA+   +K+    HV   L
Sbjct:   330 VYSNGWRYTFAIASIPSLFQFILGYWFVESPRWLVSKNREDEAKQIMKKI--EPHVSEDL 387

Query:   262 AEL-------SKLD-RGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSS 313
              +L       S L+ +G+D  +  F+   Y ++ ++  IG  L  LQQ  GIN + Y+S 
Sbjct:   388 IDLQITRIRSSVLEQKGNDNWLQLFQ---Y-QYLKIYIIGFGLNMLQQFVGINCVIYYSG 443

Query:   314 SVFKSAGLSSGLA---NVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAI--- 367
              + + AG +   A      VGI  L+  ++++ L+D+ GRK LL      M + +A+   
Sbjct:   444 IILEDAGFAKNAAVLIGALVGIPQLVMLLISVWLIDRFGRKPLLLVGCIGMIIGLAVLGY 503

Query:   368 ---QVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVC 424
                  +  +  I  +   +++V GM+ F L F++G GP+P+L+  EIFPS+IR KAMA+ 
Sbjct:   504 PFYDNSNPTGKIDNTKKGWIAVAGMIFFKLMFSMGLGPIPALIGSEIFPSKIRGKAMAIS 563

Query:   425 MSVHWVINFFVGXXXXXXXXXXXXXX-XYSIFGTFCLMAVAFVKRNVVETKGKSLQEIEI 483
               ++W  N  V                 +  FG   ++   FV   V ETK   ++E+  
Sbjct:   564 QLLNWAANCIVNSMYLHMVNSKLGQAGTFWFFGGISIITFFFVLILVPETKNVQIEELSK 623

Query:   484 ALL 486
              LL
Sbjct:   624 RLL 626

GO:0055085 "transmembrane transport" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

GO:0008643 "carbohydrate transport" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

TAIR|locus:2025132 ERDL6 "ERD6-like 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 544 (196.6 bits), Expect = 1.7e-52, P = 1.7e-52
 Identities = 134/441 (30%), Positives = 232/441 (52%)

Query:    53 VLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVV-SMCLGGAFIGSTLSGWI 111
             VL+  L    FG+  G  +    +I+ DLG    T++E  V  S+   GA +G+  SG I
Sbjct:    52 VLIVALGPIQFGFTCGYSSPTQAAITKDLGL---TVSEYSVFGSLSNVGAMVGAIASGQI 108

Query:   112 ADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSP 171
             A+ +GR+ +  + A+P IIG    +  ++   + +GR + G G+G+      +Y+ E++P
Sbjct:   109 AEYIGRKGSLMIAAIPNIIGWLCISFAKDTSFLYMGRLLEGFGVGIISYTVPVYIAEIAP 168

Query:   172 PFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAES 231
               +RG  G+  Q++  +G+M + L+G+ V      WRI   + I+P  +L   + F  ES
Sbjct:   169 QNMRGGLGSVNQLSVTIGIMLAYLLGLFVP-----WRILAVLGILPCTLLIPGLFFIPES 223

Query:   232 PHWLYKKGRTAEAEAEFEKLLG-GSHVKSSLAELSK-LDRGDDGDIVKFEELLYGRHFRV 289
             P WL K G T E E   + L G  + +   + E+ + +      + V+F +L   R++  
Sbjct:   224 PRWLAKMGMTDEFETSLQVLRGFETDITVEVNEIKRSVASSTKRNTVRFVDLKRRRYYFP 283

Query:   290 VFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVF-VGIANLLGSVVAMVLMDKL 348
             + +G  L  LQQL GIN + ++SS++F+SAG++S  A  F VG   ++ + ++  L+DK 
Sbjct:   284 LMVGIGLLVLQQLGGINGVLFYSSTIFESAGVTSSNAATFGVGAIQVVATAISTWLVDKA 343

Query:   349 GRKALLQWSFFSMAVSMAIQVAAS--SSYIPGSASLY-----LSVGGMLMFVLTFALGAG 401
             GR+ LL  S   M +S+ I  AA     ++   + +Y     LSV G++  V+ F+LG G
Sbjct:   344 GRRLLLTISSVGMTISLVIVAAAFYLKEFVSPDSDMYSWLSILSVVGVVAMVVFFSLGMG 403

Query:   402 PVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGXXXXXXXXXXXXXXXYSIFGTFCLM 461
             P+P L++ EI P  I+  A ++    +W  ++ +                ++++G  C  
Sbjct:   404 PIPWLIMSEILPVNIKGLAGSIATLANWFFSWLI-TMTANLLLAWSSGGTFTLYGLVCAF 462

Query:   462 AVAFVKRNVVETKGKSLQEIE 482
              V FV   V ETKGK+L+E++
Sbjct:   463 TVVFVTLWVPETKGKTLEELQ 483

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0009705 "plant-type vacuole membrane" evidence=IDA

GO:0010030 "positive regulation of seed germination" evidence=IMP

GO:0042593 "glucose homeostasis" evidence=IMP

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0009694 "jasmonic acid metabolic process" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

TAIR|locus:2016407 AT1G19450 [Arabidopsis thaliana (taxid:3702)]

 Score = 542 (195.9 bits), Expect = 2.7e-52, P = 2.7e-52
 Identities = 136/442 (30%), Positives = 236/442 (53%)

Query:    53 VLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVV-SMCLGGAFIGSTLSGWI 111
             VL+  L    FG+  G  +    +I+ DLG    T++E  V  S+   GA +G+  SG I
Sbjct:    53 VLIVALGPIQFGFTCGYSSPTQAAITKDLGL---TVSEYSVFGSLSNVGAMVGAIASGQI 109

Query:   112 ADGVGRRRAFQLCALPMIIG-ASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVS 170
             A+ VGR+ +  + A+P IIG  SIS   ++   + +GR + G G+G+      +Y+ E++
Sbjct:   110 AEYVGRKGSLMIAAIPNIIGWLSISFA-KDTSFLYMGRLLEGFGVGIISYTVPVYIAEIA 168

Query:   171 PPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAE 230
             P  +RG  G+  Q++  +G+M + L+G+ V      WRI   + ++P  +L   + F  E
Sbjct:   169 PQTMRGALGSVNQLSVTIGIMLAYLLGLFVP-----WRILAVLGVLPCTLLIPGLFFIPE 223

Query:   231 SPHWLYKKGRTAEAEAEFEKLLG-GSHVKSSLAELSK-LDRGDDGDIVKFEELLYGRHFR 288
             SP WL K G T + E   + L G  + +   + E+ + +        V+F +L   R++ 
Sbjct:   224 SPRWLAKMGLTDDFETSLQVLRGFETDITVEVNEIKRSVASSSKRSAVRFVDLKRRRYYF 283

Query:   289 VVFIGSTLFALQQLSGINAIFYFSSSVFKSAGL-SSGLANVFVGIANLLGSVVAMVLMDK 347
              + +G  L ALQQL GIN + ++SS++F+SAG+ SS +A   VG+  ++ + +A  L+DK
Sbjct:   284 PLMVGIGLLALQQLGGINGVLFYSSTIFESAGVTSSNVATFGVGVVQVVATGIATWLVDK 343

Query:   348 LGRKALLQWSFFSMAVSMAIQVAAS--SSYIPGSASLY-----LSVGGMLMFVLTFALGA 400
              GR+ LL  S   M +S+ I   A     ++   +++Y     +SV G++  V++ +LG 
Sbjct:   344 AGRRLLLMISSIGMTISLVIVAVAFYLKEFVSPDSNMYNILSMVSVVGVVAMVISCSLGM 403

Query:   401 GPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGXXXXXXXXXXXXXXXYSIFGTFCL 460
             GP+P L++ EI P  I+  A ++   ++W +++ V                ++++   C 
Sbjct:   404 GPIPWLIMSEILPVNIKGLAGSIATLLNWFVSWLV-TMTANMLLAWSSGGTFTLYALVCG 462

Query:   461 MAVAFVKRNVVETKGKSLQEIE 482
               V FV   V ETKGK+L+EI+
Sbjct:   463 FTVVFVSLWVPETKGKTLEEIQ 484

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

TIGR_CMR|CBU_0347 CBU_0347 "d-xylose-proton symporter, putative" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 528 (190.9 bits), Expect = 8.3e-51, P = 8.3e-51
 Identities = 134/458 (29%), Positives = 234/458 (51%)

Query:    35 NGTEVENTNPSWKLSFPHVL--VATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGL 92
             N T+ +   P+ K  F  V+  +A  +  LFGY  GV++  +  IS +  F+ +    G 
Sbjct:     2 NSTD-QYVLPAKKSHFYWVIAFIAAFAGILFGYDTGVISGAILFISQE--FHLSPQMNGF 58

Query:    93 VVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVG 152
             VVS  L GAF+G+  SG +AD +GR+R   + AL  I+G +IS+ T ++  +++GR +VG
Sbjct:    59 VVSAVLIGAFLGALFSGHLADYIGRKRLLIIDALIFIVGTAISSMTVSISWLVIGRIIVG 118

Query:   153 TGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFW 212
               +G+    A LY++E+SPP  RG   +  Q+A  +G+  S ++         W R  F 
Sbjct:   119 IAIGIASYSAPLYISEISPPHRRGALVSLNQLAVTIGIFLSYVVDYYFARHDAW-RSMFA 177

Query:   213 VSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLG-GSHVKSSLAELSKLDRGD 271
               ++PAA+L L M+    SP W++ +G   +A     KL G G H +  L  +    +  
Sbjct:   178 AGVIPAALLLLGMIVLPYSPRWIFSRGHEEKALWILRKLRGHGPHAEQELEHIRASLQQQ 237

Query:   272 DGDIVKFEELLYGRHFR-VVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSG----LA 326
              GD       L+ +  R  +FI   L   QQ++GIN + Y++ ++ K  G  +     LA
Sbjct:   238 KGDW----RTLFSKIIRPTLFIAIGLAVFQQVTGINTVLYYAPTILKMTGFQASQTAILA 293

Query:   327 NVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASL--YL 384
              + +G   ++ +++++ L+D LGR+ LL     +M VS+   V + S  + G      ++
Sbjct:   294 TMGIGAVLVIITIISLPLIDSLGRRPLLFIGVGAMTVSLL--VLSWSFKVHGHMDYMRWI 351

Query:   385 SVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGXXXXXXXX 444
             + G +L+F+  F++  GP+  L+  EIFP R+R    ++    +W  N+ V         
Sbjct:   352 AFGSLLVFISGFSISLGPIMWLMFSEIFPLRVRGLGASIGACTNWASNWLVTITFLTLIE 411

Query:   445 XXXXXXXYSIFGTFCLMAVAFVKRNVVETKGKSLQEIE 482
                    + I+    ++ + F+  +V ETKG +L++IE
Sbjct:   412 YLGPSGTFFIYFIISVITLIFIYTSVPETKGVTLEQIE 449

GO:0015519 "D-xylose:hydrogen symporter activity" evidence=ISS

GO:0015753 "D-xylose transport" evidence=ISS

TAIR|locus:2009832 INT2 "inositol transporter 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 406 (148.0 bits), Expect = 2.3e-50, Sum P(2) = 2.3e-50
 Identities = 109/359 (30%), Positives = 178/359 (49%)

Query:    45 SWKLSFPHVL----VATLSSFLFGYHLGVVNEPLESISLDL-GFNGNTLAEGLVVSMCLG 99
             +WK   P+VL     A +   LFGY  GV++  L  I  D    + NT  + ++VSM + 
Sbjct:    22 TWKN--PYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRNTWLQEMIVSMAVA 79

Query:   100 GAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGP 159
             GA +G+ + GW  D +GRR A  +     ++GA I A   N   +++GR  VG G+G+  
Sbjct:    80 GAIVGAAIGGWANDKLGRRSAILMADFLFLLGAIIMAAAPNPSLLVVGRVFVGLGVGMAS 139

Query:   160 TVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAA 219
               A LY++E SP  +RG   +        G   S LI +   ++ G WR    ++ +PA 
Sbjct:   140 MTAPLYISEASPAKIRGALVSTNGFLITGGQFLSYLINLAFTDVTGTWRWMLGIAGIPAL 199

Query:   220 ILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSK------LDRGDDG 273
             +  + M    ESP WLY+KGR  EA+A   ++     V+  +  L        L+ G   
Sbjct:   200 LQFVLMFTLPESPRWLYRKGREEEAKAILRRIYSAEDVEQEIRALKDSVETEILEEGSSE 259

Query:   274 DI--VKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSG-----LA 326
              I  +K  +    R   +  +G  +F  QQ  GIN + Y+S ++ + AG +S      L+
Sbjct:   260 KINMIKLCKAKTVRRGLIAGVGLQVF--QQFVGINTVMYYSPTIVQLAGFASNRTALLLS 317

Query:   327 NVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAA---SSSYIPGSASL 382
              V  G+ N  GS++++  +D++GRK LL  S F + +S+ I       ++++ P  +SL
Sbjct:   318 LVTAGL-NAFGSIISIYFIDRIGRKKLLIISLFGVIISLGILTGVFYEAATHAPAISSL 375

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005366 "myo-inositol:hydrogen symporter activity" evidence=IMP;IDA

GO:0015798 "myo-inositol transport" evidence=IDA

GO:0023052 "signaling" evidence=TAS

GO:0090406 "pollen tube" evidence=TAS

GO:0006863 "purine nucleobase transport" evidence=RCA

ZFIN|ZDB-GENE-030829-25 slc2a8 "solute carrier family 2 (facilitated glucose transporter), member 8" [Danio rerio (taxid:7955)]

 Score = 347 (127.2 bits), Expect = 6.8e-49, Sum P(2) = 6.8e-49
 Identities = 94/323 (29%), Positives = 161/323 (49%)

Query:    49 SFPHVLVATLSSFLFGYHLGVVNE--PLESISLDLGFNGNTLAEGLVVSMCLGGAFIGST 106
             +F  VL      F+ GY    + E   ++ + L L     +   G VV++   GA +G  
Sbjct:    40 TFAAVLGPLSFGFVLGYSSPAIPELRRIQDLRLQLSVEEASWF-GSVVTI---GAALGGL 95

Query:   107 LSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYV 166
             L GWI + +GR+ +   CA+P I G +     +N     +GR + G   G+   V  LY+
Sbjct:    96 LGGWIVERIGRKLSLMFCAIPFIFGFTTIIAAQNHWMFYVGRVLTGLASGVTSLVVPLYI 155

Query:   167 TEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMV 226
             +E++   VRGT G+ +Q+   +G+MG+ + G+ +      WR     S +P  ++ L+M 
Sbjct:   156 SEMAHERVRGTLGSCVQLMVVIGIMGAYVTGLFLD-----WRWLAVASSIPPTLMLLSMC 210

Query:   227 FCAESPHWLYKKGRTAEAEAEFEKLLG-GSHVKSSLAELSKLDRGDDGDIVKFEELLYGR 285
             F  E+P +L  +G+  EAE     L G  +  +   A +    + ++       +L    
Sbjct:   211 FMPETPRFLLCQGKRREAEDALRFLRGPDAPAEWECARIEDAYKNEEQSF-SLGDLKDPG 269

Query:   286 HFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGL-SSGLANVFVGIANLLGSVVAMVL 344
              ++ + IG  +  LQQ +GINAI +++ ++F+ A   SS +A V V    ++ + +A ++
Sbjct:   270 VYKPLGIGVMMMLLQQFTGINAIMFYAETIFEQAHFKSSDVATVIVAATQVVFTAIAALI 329

Query:   345 MDKLGRKALLQWSFFSMAVSMAI 367
             MDK GRK LL  S   M VS A+
Sbjct:   330 MDKAGRKVLLILSGVVMCVSEAV 352

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

GO:0008643 "carbohydrate transport" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P28568	GTR3_CHICK	No assigned EC number	0.3034	0.8527	0.8407	yes	no
P47842	GTR3_CANFA	No assigned EC number	0.3028	0.8752	0.8646	yes	no
Q9JIF3	GTR8_MOUSE	No assigned EC number	0.3006	0.8875	0.9098	yes	no
Q07647	GTR3_RAT	No assigned EC number	0.3010	0.8711	0.8640	yes	no
C0SPB2	YWTG_BACSU	No assigned EC number	0.3146	0.8548	0.9146	yes	no
P58352	GTR3_BOVIN	No assigned EC number	0.3115	0.8629	0.8542	yes	no
Q9FYG3	PLST2_ARATH	No assigned EC number	0.7479	0.9979	0.9898	yes	no
P11169	GTR3_HUMAN	No assigned EC number	0.3036	0.8793	0.8669	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00016716001 SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (488 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	489
pfam00083	449	pfam00083, Sugar_tr, Sugar (and other) transporter	4e-79
TIGR00879	481	TIGR00879, SP, MFS transporter, sugar porter (SP)	8e-75
PRK10077	479	PRK10077, xylE, D-xylose transporter XylE; Provisi	2e-66
TIGR00895	398	TIGR00895, 2A0115, benzoate transport	2e-17
TIGR00898	505	TIGR00898, 2A0119, cation transport protein	6e-17
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	8e-15
TIGR00883	394	TIGR00883, 2A0106, metabolite-proton symporter	6e-14
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	3e-12
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	2e-09
TIGR00891	405	TIGR00891, 2A0112, putative sialic acid transporte	5e-09
PRK11551	406	PRK11551, PRK11551, putative 3-hydroxyphenylpropio	3e-08
TIGR00887	502	TIGR00887, 2A0109, phosphate:H+ symporter	3e-06
PRK12307	426	PRK12307, PRK12307, putative sialic acid transport	5e-06
TIGR00880	141	TIGR00880, 2_A_01_02, Multidrug resistance protein	5e-06
COG2814	394	COG2814, AraJ, Arabinose efflux permease [Carbohyd	3e-05
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	6e-05
pfam13347	425	pfam13347, MFS_2, MFS/sugar transport protein	1e-04
COG0738	422	COG0738, FucP, Fucose permease [Carbohydrate trans	4e-04
TIGR01299	742	TIGR01299, synapt_SV2, synaptic vesicle protein SV	6e-04
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	8e-04
TIGR00711	485	TIGR00711, efflux_EmrB, drug resistance transporte	0.001
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	0.003

>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter

 Score =  253 bits (648), Expect = 4e-79
 Identities = 147/450 (32%), Positives = 241/450 (53%), Gaps = 19/450 (4%)

Query: 53  VLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAE---------GLVVSMCLGGAFI 103
            LVA L  FLFGY  GV+   L  I     F   T            GL+VS+   G  I
Sbjct: 2   ALVAALGGFLFGYDTGVIGAFLTLIKFFKRFGALTSIGACAASTVLSGLIVSIFSVGCLI 61

Query: 104 GSTLSGWIADGVGRRRAFQLCALPMIIGA--SISATTRNLIGMLLGRFVVGTGMGLGPTV 161
           GS  +G + D  GR+++  +  +  +IGA     A  ++   +++GR +VG G+G    +
Sbjct: 62  GSLFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGKSFYMLIVGRVIVGLGVGGISVL 121

Query: 162 AALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGW--WRICFWVSIVPAA 219
             +Y++E++P  +RG  G+  Q+    G++ + +IG+ + + +    WRI   +  VPA 
Sbjct: 122 VPMYISEIAPKKLRGALGSLYQLGITFGILVAAIIGLGLNKYSNSDGWRIPLGLQFVPAI 181

Query: 220 ILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAE-LSKLDRGDDGDIVKF 278
           +L + ++F  ESP WL  KG+  EA A   KL G S V   + E    L+R  + +   +
Sbjct: 182 LLLIGLLFLPESPRWLVLKGKLEEARAVLAKLRGVSDVDQEIQEEKDSLERSVEAEKASW 241

Query: 279 EELLYGRHFR-VVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLS-SGLANVFVGIANLL 336
            EL  G+  R  + +G  L   QQL+GINAIFY+S ++F++ GLS S L  + VG+ N +
Sbjct: 242 LELFRGKTVRQRLLMGVMLQIFQQLTGINAIFYYSPTIFETLGLSDSLLVTIIVGVVNFV 301

Query: 337 GSVVAMVLMDKLGRKALLQWSFFSMAVSMAI-QVAASSSYIPGSASLYLSVGGMLMFVLT 395
            + +A+ L+D+ GR+ LL      MA+   +  VA         A   +++  +L+F+  
Sbjct: 302 FTFIAIFLVDRFGRRPLLLLGAAGMAICFLVLGVALLGVAKSKGAG-IVAIVFILLFIAF 360

Query: 396 FALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIF 455
           FALG GPVP +++ E+FP  +R KAMA+  + +W+ NF +G LF  +   +G   ++ +F
Sbjct: 361 FALGWGPVPWVIVSELFPLGVRPKAMAIATAANWLANFLIGFLFPIITGAIGGY-VFLVF 419

Query: 456 GTFCLMAVAFVKRNVVETKGKSLQEIEIAL 485
               ++ + FV   V ETKG++L+EI+   
Sbjct: 420 AGLLVLFILFVFFFVPETKGRTLEEIDELF 449

Length = 449

>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family

 Score =  243 bits (621), Expect = 8e-75
 Identities = 141/452 (31%), Positives = 237/452 (52%), Gaps = 25/452 (5%)

Query: 54  LVATLSSFLFGYHLGVVNEPLESISLDLGFNGN------TLAEGLVVSMCLGGAFIGSTL 107
           L+A +   +FGY  GV+   L   + +  F         +   GLVVS+ L G FIG+  
Sbjct: 31  LIAAIGGLMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALF 90

Query: 108 SGWIADGVGRRRAFQLCALPMIIGASISATTRNLIG---MLLGRFVVGTGMGLGPTVAAL 164
           +GW++D  GR+++  + AL  +IGA +       +    +++GR ++G G+G+   +  +
Sbjct: 91  AGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPM 150

Query: 165 YVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGW---WRICFWVSIVPAAIL 221
           Y++E++P  +RG   +  Q+A   G++ +   G            WRI   + ++PA +L
Sbjct: 151 YLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKV-SLNNTLGWRIPLGLQLIPAGLL 209

Query: 222 CLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHV-KSSLAELS----KLDRGDDGDIV 276
            L + F  ESP WL  KGR  EA     +L G S   K  L EL     K          
Sbjct: 210 FLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDELELIDIKRSIEKRSVQP 269

Query: 277 KFEELLY--GRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSG---LANVFVG 331
            +  L     R  R +F+G  L   QQ +GINAI Y+S ++F++AG+S+    L ++ VG
Sbjct: 270 SWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLVSIIVG 329

Query: 332 IANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAI--QVAASSSYIPGSASLYLSVGGM 389
             N   + VA+ L+D+ GR+ LL      MA+ + +   + AS       +S  +++  +
Sbjct: 330 AVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFI 389

Query: 390 LMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQ 449
           L+F+  FA+G GPVP +++ EIFP  +R K +++ ++ +W+ NF VG LF  +LE +G  
Sbjct: 390 LLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVG 449

Query: 450 LLYSIFGTFCLMAVAFVKRNVVETKGKSLQEI 481
            ++  FG   ++ + FV   + ETKG++L+EI
Sbjct: 450 GVFIFFGGLNVLGLIFVYFFLPETKGRTLEEI 481

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481

>gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional

 Score =  221 bits (564), Expect = 2e-66
 Identities = 141/469 (30%), Positives = 225/469 (47%), Gaps = 52/469 (11%)

Query: 53  VLVATLSSFLFGYHLGVVNEPLESI------SLDLGFNGNTLAEGLVVSMCLGGAFIGST 106
            LVATL   LFGY   V++  +ES+        +L  +      G  V+  L G  IG  
Sbjct: 14  TLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGA 73

Query: 107 LSGWIADGVGRRRAFQLCALPMIIGA-----------SISATTRNLIGML-LGRFVVGTG 154
           L G+ ++  GRR + ++ A+   I A           SI       +    + R + G G
Sbjct: 74  LGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIG 133

Query: 155 MGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLI-----GIPVKEIAGW--- 206
           +GL   ++ +Y+ E++P  +RG   +F Q A    + G L++      I     A W   
Sbjct: 134 VGLASMLSPMYIAEIAPAHIRGKLVSFNQFAI---IFGQLVVYFVNYFIARSGDASWLNT 190

Query: 207 --WRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAEL 264
             WR  F    +PA +  + + F  E+P +L  +G+  +AE    K++G +    +L E+
Sbjct: 191 DGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGNTLATQALQEI 250

Query: 265 -SKLDRGDDGDIVKFEELL-YGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLS 322
              LD G         +LL +G    V+ IG  L   QQ  GIN + Y++  +FK+ G S
Sbjct: 251 KHSLDHG----RKTGGKLLMFG--VGVIVIGVMLSVFQQFVGINVVLYYAPEIFKTLGAS 304

Query: 323 SGLA---NVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGS 379
           + +A    + VG+ NL  +V+A++ +DK GRK L       MA+ M     A  +  PG 
Sbjct: 305 TDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPG- 363

Query: 380 ASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLF 439
               +++  ML +V  FA+  GPV  +LL EIFP+ IR KA+A+ ++  W+ N+FV   F
Sbjct: 364 ---IVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTF 420

Query: 440 ------LRLLEQLGPQLLYSIFGTFCLMAVAFVKRNVVETKGKSLQEIE 482
                   L+        Y I+G   ++A  F+ + V ETKGK+L+E+E
Sbjct: 421 PMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEEME 469

Length = 479

>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport

 Score = 83.6 bits (207), Expect = 2e-17
 Identities = 83/399 (20%), Positives = 150/399 (37%), Gaps = 27/399 (6%)

Query: 37  TEVENTNPSWKLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSM 96
                  P  +  +  ++++ L   + GY L  +     +IS + G +   L  G + S 
Sbjct: 3   QNNIRKQPLSRYQWRAIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQL--GFLFSA 60

Query: 97  CLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMG 156
            L G   G+   G +AD +GRRR      L   +   + A   N+  +L+ RF+ G G+G
Sbjct: 61  GLIGMAFGALFFGPLADRIGRRRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLG 120

Query: 157 LGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWV-SI 215
                    V+E +P   RGT    +     +G      +   +  + G WR  F+V  I
Sbjct: 121 GLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFG-WRSLFYVGGI 179

Query: 216 VPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDI 275
            P  +L L M F  ES  +L  K    E        +       + + L +         
Sbjct: 180 APLLLLLLLMRFLPESIDFLVSKR--PETVRRIVNAIAPQMQAEAQSALPEQKATQGTKR 237

Query: 276 VKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSS----VFKSAGLSSGLANVFVG 331
             F+ L  G+  R+  +   L+ +  +       YF ++    +    G S  LA     
Sbjct: 238 SVFKALFQGKTARITVLLWLLYFMLLVG-----VYFLTNWLPKLMVELGFSLSLAATGGA 292

Query: 332 IAN---LLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGG 388
           + N   ++GS++   L D+LG +         +  ++   +  S+ + P    L  ++ G
Sbjct: 293 LFNFGGVIGSIIFGWLADRLGPRVTA---LLLLLGAVFAVLVGSTLFSPTLLLLLGAIAG 349

Query: 389 MLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSV 427
                  F  G       L+   +P+ IRA  +   + +
Sbjct: 350 F------FVNGGQSGLYALMALFYPTAIRATGVGWAIGI 382

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398

>gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein

 Score = 83.1 bits (206), Expect = 6e-17
 Identities = 93/392 (23%), Positives = 154/392 (39%), Gaps = 37/392 (9%)

Query: 100 GAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGP 159
           G  +GS + G+++D  GR++   L  L   +   ++A + N    L+ R +VG G+G   
Sbjct: 139 GVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVGMGIGGIW 198

Query: 160 TVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAA 219
             A +  TE  P   R   G  IQ+   LGL+   L+   + +    WR       +P  
Sbjct: 199 VQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPD----WRWLQLAVSLPTF 254

Query: 220 ILCLAMVFCAESPHWLYKKGRTAEAEAEFEKL--LGGSHVKSSLAELSKL-DRGDDGDIV 276
           +  L   F  ESP WL  +GR  EA    +++  + G  + + +  LS   D        
Sbjct: 255 LFFLLSWFVPESPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQY 314

Query: 277 KFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSA-GLSSGLANVFVGIANL 335
            F +L    + R   +      L  L    A  Y+   +     G +  L     G+  L
Sbjct: 315 SFLDLFRTPNLRKTTL-----CLMMLWFTTAFSYYGLVLDLGNLGGNIYLDLFISGLVEL 369

Query: 336 LGSVVAMVLMDKLGRKALLQWSFFSMAV-SMAIQVAASSSYIPGSASLYLSVGGMLM-FV 393
              ++ ++L+D+LGR+  +  S     V  + +       Y   +A   L   G+   F 
Sbjct: 370 PAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQ 429

Query: 394 LTFALGAGPVPSLLLPEIFPSRIRAKAMAVC--MSVHWVINFFVGLLFLRLLEQLG---P 448
           + +         L   E++P+ +R   + VC  M+        VG +    L  LG    
Sbjct: 430 MVY---------LYTAELYPTVVRNLGVGVCSTMAR-------VGSIISPFLVYLGEKWL 473

Query: 449 QLLYSIFGTFCLMAVAFVKRNVVETKGKSLQE 480
            L   +FG   L+A       + ETKG  L E
Sbjct: 474 FLPLVLFGGLALLAGILT-LFLPETKGVPLPE 504

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 75.4 bits (186), Expect = 8e-15
 Identities = 55/176 (31%), Positives = 87/176 (49%), Gaps = 3/176 (1%)

Query: 53  VLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIA 112
           +L+  L  FL G   G+++  L  ++ DLG + +    GL+VS    G  +GS L+G+++
Sbjct: 1   LLLLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQA--GLIVSAFSLGYALGSLLAGYLS 58

Query: 113 DGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPP 172
           D  GRRR   L  L   +G+ + A   +L  +L+GRF++G G G     AA  + E  PP
Sbjct: 59  DRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPP 118

Query: 173 FVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFC 228
             RG           LG +   L+G  + E  G WR  F +  +   +L L ++F 
Sbjct: 119 KERGRALGLFSAGFGLGALLGPLLGGLLAESLG-WRWLFLILAILGLLLALLLLFL 173

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter

 Score = 73.1 bits (180), Expect = 6e-14
 Identities = 76/343 (22%), Positives = 132/343 (38%), Gaps = 62/343 (18%)

Query: 103 IGSTLSGWIADGVGRRRAFQLCALPMIIGASISAT--TRNLIGM------LLGRFVVGTG 154
           +G+ + G   D +GR++   +  L M IG  +     +   IG+      LL R + G  
Sbjct: 50  LGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQGFS 109

Query: 155 MGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAG------W-W 207
           +G     AALY+ E +PP  RG YG+F Q+   +GL+ + L  + +  + G      W W
Sbjct: 110 LGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGW 169

Query: 208 RICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKL 267
           RI F VS V   I         E+P +   + +  +      + L               
Sbjct: 170 RIPFLVSAVLVLIGLYLRRNLEETPVFEKAQEKHKKKRGPIAETLT-------------- 215

Query: 268 DRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLAN 327
                            +H +   +G  L      +      Y  + + ++ GLS   AN
Sbjct: 216 -----------------KHRKPFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLS---AN 255

Query: 328 VFVGIANLLGSVVAMV-------LMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSA 380
             + +  +L  ++  +       L D++GR+ +L        V  A+        +  S 
Sbjct: 256 SALLV-LMLSLILFFITIPLSGALSDRIGRRPVLII----FTVLAALLAVPLLMALLDSG 310

Query: 381 SLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAV 423
           S  L    +L   L   +  GP+ S L PE+FP+ +R    ++
Sbjct: 311 SFTLFFFLVLGMALIGGMYTGPMGSFL-PELFPTEVRYTGASL 352

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc [Transport and binding proteins, Unknown substrate]. Length = 394

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 67.5 bits (165), Expect = 3e-12
 Identities = 72/374 (19%), Positives = 139/374 (37%), Gaps = 44/374 (11%)

Query: 53  VLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIA 112
           + +A   + L    LG        ++ DLG +   +  GL+++    G  +   L+G ++
Sbjct: 1   LFLAAFLAGLGRSLLGPALPLY--LAEDLGISPTEI--GLLLTAFSLGYALAQPLAGRLS 56

Query: 113 DGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPP 172
           D  GRRR   +  L   +G  +     +L  +L+ R + G G G     AA  + +  PP
Sbjct: 57  DRFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGGGALFPAAAALIADWFPP 116

Query: 173 FVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESP 232
             RG     +     LG     L+G  +  + G WR  F +  + A +  +         
Sbjct: 117 EERGRALGLLSAGFGLGAALGPLLGGLLASLFG-WRAAFLILAILALLAAVLAAL----- 170

Query: 233 HWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFI 292
             L +    ++     E+                        +V   +LL       + +
Sbjct: 171 -LLPRPPPESKRPKPAEEAPAP--------------------LVPAWKLLLRDPVLWLLL 209

Query: 293 GSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMV---LMDKLG 349
              LF         A+  +     +  GLS+ LA + +G+A LLG++  ++   L D+LG
Sbjct: 210 ALLLFGF----AFFALLTYLPLYQEVLGLSALLAGLLLGLAGLLGAIGRLLLGRLSDRLG 265

Query: 350 RKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLP 409
           R+  L  +   + +      A   + +  + S    +  +L+      L    + +L+  
Sbjct: 266 RRRRLLLALLLLIL-----AALGLALLSLTESSLWLLVALLLLGFGAGLVFPALNALVS- 319

Query: 410 EIFPSRIRAKAMAV 423
           ++ P   R  A  +
Sbjct: 320 DLAPKEERGTASGL 333

Length = 346

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 58.9 bits (143), Expect = 2e-09
 Identities = 37/191 (19%), Positives = 63/191 (32%), Gaps = 14/191 (7%)

Query: 281 LLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSS----GLANVFVGIANLL 336
            L       + +   L       G   +  +     +     S    GL     G+  +L
Sbjct: 167 ALLLLFLLRLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGIL 226

Query: 337 GSVVAMVLMDKLGRKALLQW-SFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLT 395
           G+++  +L D+LGR+ LL        A+ + +   A S  +   A L L  G    F   
Sbjct: 227 GALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPAL 286

Query: 396 FALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIF 455
             L           E+ P   R  A  +  +   +      LL   LL+  G   ++ I 
Sbjct: 287 LTL---------ASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLIL 337

Query: 456 GTFCLMAVAFV 466
               L+A   +
Sbjct: 338 AALALLAALLL 348

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|233172 TIGR00891, 2A0112, putative sialic acid transporter

 Score = 58.0 bits (140), Expect = 5e-09
 Identities = 68/321 (21%), Positives = 112/321 (34%), Gaps = 24/321 (7%)

Query: 103 IGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVA 162
            G+ + G   D  GRR       +    G          I M + R V+G GMG     +
Sbjct: 62  FGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSS 121

Query: 163 ALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAG-WWRICFWVSIVPAAIL 221
           A YV E  P  +R      +     +G + +  +   V  + G  WR  F++SI+P    
Sbjct: 122 AAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFA 181

Query: 222 CLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSH-VKSSLAELSKLDRGDDGDIVKFEE 280
                   E+  W  K    A      + L GG H + + +  L+       G     + 
Sbjct: 182 LWLRKNIPEAEDWKEKHAGKALVRTMVDILYGGEHRIANIVMTLAAAMVQSAG-----KR 236

Query: 281 LLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLAN---VFVGIANLLG 337
                +  V+ + + L++      I  +    + +    GLS        VF  I  ++G
Sbjct: 237 WPTFVYLVVLVLFANLYS----HPIQDL--LPTYLKADLGLSPHTVANIVVFSNIGAIVG 290

Query: 338 SVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFA 397
             V   L D LGR+        S+     + +     +  G+    L +G     +L   
Sbjct: 291 GCVFGFLGDWLGRRKAY---VCSLLAGQLLIIPV---FAIGANVAVLGLGLFFQQMLVQ- 343

Query: 398 LGAGPVPSLLLPEIFPSRIRA 418
            G   +    L E FP+  RA
Sbjct: 344 -GIWGILPKHLGEYFPTDQRA 363

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 405

>gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

 Score = 55.4 bits (134), Expect = 3e-08
 Identities = 77/328 (23%), Positives = 131/328 (39%), Gaps = 55/328 (16%)

Query: 98  LGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGL 157
           L GA +G    G +AD +GR+R   +      + +  +A   +   +L+ R +  TG+GL
Sbjct: 64  LPGALLG----GRLADRIGRKRILIVSVALFGLFSLATAQAWDFPSLLVARLL--TGVGL 117

Query: 158 G---PTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVS 214
           G   P + AL  +E   P +RGT  + +      G   + +IG+     A W R  F+V 
Sbjct: 118 GGALPNLIAL-TSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAW-RHIFYVG 175

Query: 215 -IVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDG 273
            + P  ++ L M +  ES  +    G   +       L G     ++L            
Sbjct: 176 GVGPLLLVPLLMRWLPESRAFAQAAGAGKQRAPVLRALFGEGRATATLL----------- 224

Query: 274 DIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLS---SGLANVFV 330
                          + +   TL  L  L  +N +     S+    GLS   +GL  +  
Sbjct: 225 -------------LWISYFF-TLIVLYFL--LNWL----PSLLVGQGLSRSQAGLVQIAF 264

Query: 331 GIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGML 390
            I   LGS++   LMD+L  + ++   +  +  S+A   AA     P  A + L+     
Sbjct: 265 NIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAA-----PSFAGMLLAGFAAG 319

Query: 391 MFVLTFALGAGPVPSLLLPEIFPSRIRA 418
           +FV    +G   V   L P  +P+++R 
Sbjct: 320 LFV----VGGQSVLYALAPLFYPTQVRG 343

Length = 406

>gnl|CDD|129965 TIGR00887, 2A0109, phosphate:H+ symporter

 Score = 49.0 bits (117), Expect = 3e-06
 Identities = 100/446 (22%), Positives = 166/446 (37%), Gaps = 78/446 (17%)

Query: 100 GAFIGSTLSGWIADGVGRRRAFQLCALPMII-----GASISATTRNLIGMLL-GRFVVGT 153
           G   G    GW+AD +GR+R + +  + MII     G S  ++ ++++  L   RF +G 
Sbjct: 68  GTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGV 127

Query: 154 GMGLGPTVAALYVTEVSPPFVRGTY--------------GAFIQIATCLGLMGSL----- 194
           G+G    ++A+  +E +    RG                GA + +    G   SL     
Sbjct: 128 GIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAAD 187

Query: 195 ---LIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAE-AEAEFEK 250
                G  V  +   WRI      VPA +     +   E+P +     +  E A ++   
Sbjct: 188 EASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTADVAKDVEQAASDMSA 247

Query: 251 LLGGS------HVKSSLAELSKLDRGDDGDIVKFEELLYGRH----------FRVVFIGS 294
           +L          V+ +   +             F +  +G+H            + F G 
Sbjct: 248 VLQVKIEAEPDEVEKASTAVEVPKASWSDFFTHFFKWRHGKHLLGTAGSWFLLDIAFYGV 307

Query: 295 TLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLL-GSVVAMVLMDKLGRKAL 353
            L     LS I      +++        + + N+ + +A  + G  V + L+D +GRK +
Sbjct: 308 NLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPI 367

Query: 354 LQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGML-MFVLT-FALGAGP------VPS 405
               FF + V   +          G A  +LS  G L ++VL  F    GP      VP 
Sbjct: 368 QLMGFFILTVLFFVL---------GFAYNHLSTHGFLAIYVLAQFFANFGPNATTFIVPG 418

Query: 406 LLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYS----------IF 455
               E+FP+R R+ A  +  +            FL L +   P   Y           IF
Sbjct: 419 ----EVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIF 474

Query: 456 GTFCLMAVAFVKRNVVETKGKSLQEI 481
             F  + + F    + ETKGKSL+E+
Sbjct: 475 ALFMFLGILFTLL-IPETKGKSLEEL 499

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Anions]. Length = 502

>gnl|CDD|237051 PRK12307, PRK12307, putative sialic acid transporter; Provisional

 Score = 48.4 bits (115), Expect = 5e-06
 Identities = 80/349 (22%), Positives = 125/349 (35%), Gaps = 45/349 (12%)

Query: 77  ISLDLGFN---GNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGAS 133
           I  DLG     G  LA    +    GGA  G      +AD  GR+       +   +G  
Sbjct: 44  IKADLGLTDMEGAFLATAAFIGRPFGGALFGL-----LADKFGRKPLMMWSIVAYSVGTG 98

Query: 134 ISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGS 193
           +S     +I + L RF+VG GM      A+ Y  E  P  ++    AF+     +G + +
Sbjct: 99  LSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIA 158

Query: 194 LLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLG 253
                   E  G WR  F+V ++P  ++        ES  W          EA+      
Sbjct: 159 AYFMPSFAEAYG-WRAAFFVGLLPVLLVIYIRARAPESKEWE---------EAKLSGKGK 208

Query: 254 GSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGIN-AIFYFS 312
            S    S+  LS             + L     F +         L  + G N  IF   
Sbjct: 209 HSQSAWSVFSLS------------MKGLFNRAQFPLTLC--VFIVLFSIFGANWPIFGLL 254

Query: 313 SSVFKSAGLSSGLANVFVGIA---NLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQV 369
            +     G  +G+ +  +  A    +LG++V  +  D++G K       FS+ + M+   
Sbjct: 255 PTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKT-----FSIGLLMSFLF 309

Query: 370 AASSSYIPGSASLYLSVGGMLMFVLTFA-LGAGPVPSLLLPEIFPSRIR 417
                 IP    L L   G  +F L    +G G +    L + FP  +R
Sbjct: 310 IFPLFRIPQDNYLLL---GACLFGLMATNVGVGGLVPKFLYDYFPLEVR 355

Length = 426

>gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein

 Score = 45.7 bits (109), Expect = 5e-06
 Identities = 28/129 (21%), Positives = 53/129 (41%), Gaps = 2/129 (1%)

Query: 100 GAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGP 159
           G  I S LSG + D  GR+    +     ++  ++ A + N+  +++ RF+ G G     
Sbjct: 10  GQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFAL 69

Query: 160 TVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAA 219
              A  + ++ PP  RG     +     LG +    +G  + +  G WR  F    +  A
Sbjct: 70  VAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLG-WRAPFLFLAI-LA 127

Query: 220 ILCLAMVFC 228
           +    ++  
Sbjct: 128 LAAFILLAF 136

Length = 141

>gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]

 Score = 45.7 bits (109), Expect = 3e-05
 Identities = 61/314 (19%), Positives = 112/314 (35%), Gaps = 46/314 (14%)

Query: 91  GLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFV 150
           G +++    G  +G+ L   +   + RRR         I+   +SA   +   +LL R +
Sbjct: 51  GQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARAL 110

Query: 151 VGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRIC 210
            G   G+  ++AA     + PP  RG   A +     L  +  + +G  + ++ G WR  
Sbjct: 111 AGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFG-WRAT 169

Query: 211 FWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRG 270
           F   I   A+L L +++    P                  L     +   LA        
Sbjct: 170 FLA-IAVLALLALLLLW-KLLPPSEISGSLPGPLRTLLRLLRRPGVLLGLLATF------ 221

Query: 271 DDGDIVKFEELLYGRHFRV-VFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVF 329
                     L    HF +  +I      L+ ++G           F  + +S  L  + 
Sbjct: 222 ----------LFMTGHFALYTYIRPF---LESVAG-----------FSVSAVS--LVLLA 255

Query: 330 VGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGM 389
            GIA  +G+++   L D+  R+AL+  +   +A+++       +S     A         
Sbjct: 256 FGIAGFIGNLLGGRLADRGPRRALIA-ALLLLALALLALTFTGASPALALA--------- 305

Query: 390 LMFVLTFALGAGPV 403
           L+F+  FA      
Sbjct: 306 LLFLWGFAFSPALQ 319

Length = 394

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 45.0 bits (107), Expect = 6e-05
 Identities = 38/179 (21%), Positives = 74/179 (41%), Gaps = 2/179 (1%)

Query: 50  FPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSG 109
              +L+  L+ FL  +    +   L     ++       A GL++S+   G  +G+ L G
Sbjct: 174 LRLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEA-GLLLSLFGLGGILGALLGG 232

Query: 110 WIADGVGRRRAFQLCALP-MIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTE 168
            ++D +GRRR   L  L    +G  + A   +L  +L+   ++G G+G          +E
Sbjct: 233 LLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASE 292

Query: 169 VSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVF 227
           ++PP  RGT          LG     L+   + +  G+  +   ++ +      L ++ 
Sbjct: 293 LAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLLLL 351

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|222060 pfam13347, MFS_2, MFS/sugar transport protein

 Score = 44.1 bits (105), Expect = 1e-04
 Identities = 31/164 (18%), Positives = 58/164 (35%), Gaps = 21/164 (12%)

Query: 85  GNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTR--NLI 142
           GN     +++ +    A +G+ L  W+A   G++R F L  L   IG  +       +L 
Sbjct: 254 GNAGLFSVLLLIGTIAAILGAPLWPWLAKRFGKKRTFLLGMLLAAIGLVLLFFLPPGSLW 313

Query: 143 GMLLGRFVVGTGMGLGPTVAALYVTEV-----------SPPFVRGTYGAFIQIATCLGLM 191
             L+   + G G+GL   +    + +V                   Y    ++   LG  
Sbjct: 314 LFLVLVVLAGIGLGLATLLPWAMLADVVDYGEWKTGKRREGITFSLYSFADKLGGALGGA 373

Query: 192 GSLLI--------GIPVKEIAGWWRICFWVSIVPAAILCLAMVF 227
              L+            +  A    I    +++PA +  LA++ 
Sbjct: 374 IVGLLLAFAGYVANATAQSAAALSGIRLLFTLIPAVLALLALLI 417

This family is part of the major facilitator superfamily of membrane transport proteins. Length = 425

>gnl|CDD|223809 COG0738, FucP, Fucose permease [Carbohydrate transport and metabolism]

 Score = 42.3 bits (100), Expect = 4e-04
 Identities = 75/410 (18%), Positives = 145/410 (35%), Gaps = 45/410 (10%)

Query: 83  FNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASI---SATTR 139
           F+       L+     GG FI S  +G +   +G +    L  L   +GA++   +A+++
Sbjct: 43  FDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSK 102

Query: 140 NLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIP 199
           +    L+  F++ +G+GL  T A  YVT +  P          Q    LG +   L+G  
Sbjct: 103 SYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLG-- 160

Query: 200 VKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKS 259
                    +      + AA +       A S  + Y              L G   + +
Sbjct: 161 -----SSLILSGVALTMSAAQILAIKGADASSVQFPY------------LILAGLLVLLA 203

Query: 260 SLAELSKL--------DRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYF 311
            L  LSKL          G  G       L   +H R+  +   L+   +++  + +  +
Sbjct: 204 VLILLSKLPDLQVAAPSLGASGSAGLS-SLFQNKHLRLGVLAIFLYVGAEVAIGSFLVSY 262

Query: 312 SSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKL-GRKALLQWSFFSMAVSMAIQVA 370
              +       +     F  +  ++G  +   LM ++   K L  ++  ++ + +A  VA
Sbjct: 263 LEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLA--VA 320

Query: 371 ASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWV 430
                +   A   + +   +MF   F+L           +         +  + M++  V
Sbjct: 321 LIGGVVALYALFLIGLFNSIMFPTIFSLAL---------KNLGEHTSVGSGLLVMAI--V 369

Query: 431 INFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNVVETKGKSLQE 480
               +  L   + +  G QL + I    C + V F      ++KG+   E
Sbjct: 370 GGAIIPPLQGVIADMFGIQLTFLIVPLLCYLYVLFFALIGKKSKGRLSAE 419

Length = 422

>gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2

 Score = 41.9 bits (98), Expect = 6e-04
 Identities = 49/212 (23%), Positives = 81/212 (38%), Gaps = 20/212 (9%)

Query: 46  WKLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGF-NGNTLAEGLVVSMCLGGAFIG 104
           W L F    V  L+    G  + VV   L S   DL   +      GL+V +   G  +G
Sbjct: 166 WALFF----VLGLALMADGVEVFVVGFVLPSAEKDLCIPDSGKGMLGLIVYL---GMMVG 218

Query: 105 STLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAAL 164
           +   G +AD +GR++   +C       A  S+  +     L  R + G G+G    +   
Sbjct: 219 AFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFS 278

Query: 165 YVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGW------------WRICFW 212
           Y  E      RG + +++ +   +G + +  +   +    GW            WR+   
Sbjct: 279 YFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVI 338

Query: 213 VSIVPAAILCLAMVFCAESPHWLYKKGRTAEA 244
           V   P      A+ F  ESP +  + G+  EA
Sbjct: 339 VCAFPCVFAIGALTFMPESPRFFLENGKHDEA 370

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by PFAM model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. Length = 742

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 41.1 bits (97), Expect = 8e-04
 Identities = 41/185 (22%), Positives = 71/185 (38%), Gaps = 20/185 (10%)

Query: 287 FRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMD 346
             ++F+G  L  L     ++      +     +   +GL      +   LGS++A  L D
Sbjct: 1   LLLLFLGFFLSGLD-RGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSD 59

Query: 347 KLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAG----- 401
           + GR+ +L       A+   +   ASS +              L+ V  F LG G     
Sbjct: 60  RFGRRRVLLLGLLLFALGSLLLAFASSLW--------------LLLVGRFLLGLGGGALY 105

Query: 402 PVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLM 461
           P  + L+ E FP + R +A+ +  +   +      LL   L E LG + L+ I     L+
Sbjct: 106 PAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLL 165

Query: 462 AVAFV 466
               +
Sbjct: 166 LALLL 170

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|129794 TIGR00711, efflux_EmrB, drug resistance transporter, EmrB/QacA subfamily

 Score = 40.8 bits (96), Expect = 0.001
 Identities = 29/125 (23%), Positives = 51/125 (40%), Gaps = 1/125 (0%)

Query: 103 IGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVA 162
           I   L+GW+A   G RR F +      +G+ +     NL  M++ R + G G G    ++
Sbjct: 52  ISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVAPNLELMIIFRVIQGFGGGPLIPLS 111

Query: 163 ALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILC 222
              +  + PP  RG   A   +   +       +G  + E    WR  F +++    I+ 
Sbjct: 112 FSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYH-WRWIFLINVPIGIIVV 170

Query: 223 LAMVF 227
           +   F
Sbjct: 171 VVAFF 175

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other]. Length = 485

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 39.3 bits (92), Expect = 0.003
 Identities = 37/204 (18%), Positives = 70/204 (34%), Gaps = 19/204 (9%)

Query: 290 VFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLG 349
           +F+ + L  L +     A+  + +     +    GL      +   L   +A  L D+ G
Sbjct: 1   LFLAAFLAGLGRSLLGPALPLYLAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDRFG 60

Query: 350 RKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAG-----PVP 404
           R+ +L       A+ + + + ASS +              L+ VL    G G     P  
Sbjct: 61  RRRVLLIGLLLFALGLLLLLFASSLW--------------LLLVLRVLQGLGGGALFPAA 106

Query: 405 SLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVA 464
           + L+ + FP   R +A+ +  +   +      LL   L    G +  + I     L+A  
Sbjct: 107 AALIADWFPPEERGRALGLLSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILALLAAV 166

Query: 465 FVKRNVVETKGKSLQEIEIALLPQ 488
                +     +S +       P 
Sbjct: 167 LAALLLPRPPPESKRPKPAEEAPA 190

Length = 346

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	489
KOG0569	485	consensus Permease of the major facilitator superf	100.0
KOG0254	513	consensus Predicted transporter (major facilitator	100.0
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	100.0
PRK10077	479	xylE D-xylose transporter XylE; Provisional	100.0
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	100.0
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	100.0
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	100.0
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	100.0
TIGR00898	505	2A0119 cation transport protein.	100.0
PRK10642	490	proline/glycine betaine transporter; Provisional	100.0
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	100.0
PRK10406	432	alpha-ketoglutarate transporter; Provisional	100.0
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	100.0
PRK09952	438	shikimate transporter; Provisional	100.0
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	100.0
PRK12307	426	putative sialic acid transporter; Provisional	100.0
PRK03545	390	putative arabinose transporter; Provisional	100.0
PRK11663	434	regulatory protein UhpC; Provisional	100.0
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	100.0
PRK15075	434	citrate-proton symporter; Provisional	100.0
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	100.0
PRK09705	393	cynX putative cyanate transporter; Provisional	100.0
TIGR00891	405	2A0112 putative sialic acid transporter.	100.0
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	100.0
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	100.0
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.98
TIGR00893	399	2A0114 d-galactonate transporter.	99.97
PRK03893	496	putative sialic acid transporter; Provisional	99.97
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.97
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.97
PRK05122	399	major facilitator superfamily transporter; Provisi	99.97
PRK10504	471	putative transporter; Provisional	99.97
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.97
PRK10489	417	enterobactin exporter EntS; Provisional	99.97
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.97
PRK10091	382	MFS transport protein AraJ; Provisional	99.96
TIGR00895	398	2A0115 benzoate transport.	99.96
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.96
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.96
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.96
PRK03633	381	putative MFS family transporter protein; Provision	99.96
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.96
TIGR00900	365	2A0121 H+ Antiporter protein.	99.96
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.96
PLN00028	476	nitrate transmembrane transporter; Provisional	99.96
PRK12382	392	putative transporter; Provisional	99.96
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.96
PRK03699	394	putative transporter; Provisional	99.96
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.96
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.96
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.96
KOG1330	493	consensus Sugar transporter/spinster transmembrane	99.95
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.95
PRK09874	408	drug efflux system protein MdtG; Provisional	99.95
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.95
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.95
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.95
PRK11043	401	putative transporter; Provisional	99.95
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.95
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.95
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.95
PRK11010	491	ampG muropeptide transporter; Validated	99.95
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.95
PRK10133	438	L-fucose transporter; Provisional	99.94
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.94
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.94
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.93
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.93
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.93
KOG2533	495	consensus Permease of the major facilitator superf	99.93
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.93
PRK10054	395	putative transporter; Provisional	99.93
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.93
KOG2532	466	consensus Permease of the major facilitator superf	99.92
PRK15011	393	sugar efflux transporter B; Provisional	99.92
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.91
PRK11902	402	ampG muropeptide transporter; Reviewed	99.91
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.91
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.91
PRK09528	420	lacY galactoside permease; Reviewed	99.91
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.9
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.89
TIGR00901	356	2A0125 AmpG-related permease.	99.89
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.89
TIGR00805	633	oat sodium-independent organic anion transporter.	99.89
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.88
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.88
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.87
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.86
KOG2615	451	consensus Permease of the major facilitator superf	99.86
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.86
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.85
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.85
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.84
PTZ00207	591	hypothetical protein; Provisional	99.83
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.82
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.79
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.78
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.78
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.75
PRK09669	444	putative symporter YagG; Provisional	99.74
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.73
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.72
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.69
PRK09848	448	glucuronide transporter; Provisional	99.69
PRK10429	473	melibiose:sodium symporter; Provisional	99.68
PF13347	428	MFS_2: MFS/sugar transport protein	99.67
KOG2563	480	consensus Permease of the major facilitator superf	99.64
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.63
PRK11462	460	putative transporter; Provisional	99.63
PRK10642	490	proline/glycine betaine transporter; Provisional	99.63
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.58
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.56
COG2211	467	MelB Na+/melibiose symporter and related transport	99.56
KOG2325	488	consensus Predicted transporter/transmembrane prot	99.51
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.47
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.46
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.37
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	99.33
PRK15011	393	sugar efflux transporter B; Provisional	99.29
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.27
KOG0569	485	consensus Permease of the major facilitator superf	99.27
KOG2816	463	consensus Predicted transporter ADD1 (major facili	99.27
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.27
PRK05122	399	major facilitator superfamily transporter; Provisi	99.27
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.26
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.25
PRK12382	392	putative transporter; Provisional	99.22
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.18
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.17
PRK09528	420	lacY galactoside permease; Reviewed	99.16
PRK10054	395	putative transporter; Provisional	99.15
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	99.15
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.14
PRK09874	408	drug efflux system protein MdtG; Provisional	99.13
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	99.12
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.1
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	99.09
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.08
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.08
TIGR00893	399	2A0114 d-galactonate transporter.	99.06
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.06
PRK03893	496	putative sialic acid transporter; Provisional	99.06
PRK11663	434	regulatory protein UhpC; Provisional	99.05
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.05
TIGR00898	505	2A0119 cation transport protein.	99.05
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.05
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.04
PRK03633	381	putative MFS family transporter protein; Provision	99.04
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.04
PRK09705	393	cynX putative cyanate transporter; Provisional	99.03
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.03
PLN00028	476	nitrate transmembrane transporter; Provisional	99.02
PRK03699	394	putative transporter; Provisional	99.02
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.02
TIGR00895	398	2A0115 benzoate transport.	99.01
PRK10489	417	enterobactin exporter EntS; Provisional	99.01
PRK03545	390	putative arabinose transporter; Provisional	98.99
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	98.99
KOG3626	735	consensus Organic anion transporter [Secondary met	98.98
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	98.98
TIGR00900	365	2A0121 H+ Antiporter protein.	98.97
TIGR00891	405	2A0112 putative sialic acid transporter.	98.97
PRK14995	495	methyl viologen resistance protein SmvA; Provision	98.96
PRK09952	438	shikimate transporter; Provisional	98.96
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	98.94
TIGR00897	402	2A0118 polyol permease family. This family of prot	98.94
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	98.94
PRK12307	426	putative sialic acid transporter; Provisional	98.93
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	98.93
PRK15462	493	dipeptide/tripeptide permease D; Provisional	98.93
PRK11646	400	multidrug resistance protein MdtH; Provisional	98.92
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	98.92
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	98.92
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	98.91
PRK10091	382	MFS transport protein AraJ; Provisional	98.9
PRK11652	394	emrD multidrug resistance protein D; Provisional	98.9
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	98.9
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	98.89
PRK10504	471	putative transporter; Provisional	98.89
PRK10406	432	alpha-ketoglutarate transporter; Provisional	98.88
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	98.87
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	98.86
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	98.85
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	98.84
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	98.82
PRK11195	393	lysophospholipid transporter LplT; Provisional	98.82
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	98.81
PRK15075	434	citrate-proton symporter; Provisional	98.8
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	98.8
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	98.8
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	98.79
KOG2615	451	consensus Permease of the major facilitator superf	98.78
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	98.77
COG2270	438	Permeases of the major facilitator superfamily [Ge	98.76
PRK10207	489	dipeptide/tripeptide permease B; Provisional	98.75
PRK11043	401	putative transporter; Provisional	98.75
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	98.74
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	98.73
PRK09584	500	tppB putative tripeptide transporter permease; Rev	98.7
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	98.69
KOG3098	461	consensus Uncharacterized conserved protein [Funct	98.67
TIGR00896	355	CynX cyanate transporter. This family of proteins	98.67
PTZ00207	591	hypothetical protein; Provisional	98.66
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	98.66
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	98.66
COG0477	338	ProP Permeases of the major facilitator superfamil	98.65
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	98.65
PRK11010	491	ampG muropeptide transporter; Validated	98.65
TIGR00901	356	2A0125 AmpG-related permease.	98.64
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	98.63
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	98.62
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	98.62
PRK09848	448	glucuronide transporter; Provisional	98.59
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	98.58
KOG1330	493	consensus Sugar transporter/spinster transmembrane	98.58
KOG0254	513	consensus Predicted transporter (major facilitator	98.54
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	98.52
KOG3764	464	consensus Vesicular amine transporter [Intracellul	98.51
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	98.5
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	98.47
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.45
PF13347	428	MFS_2: MFS/sugar transport protein	98.44
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	98.41
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	98.41
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	98.4
PRK09669	444	putative symporter YagG; Provisional	98.4
TIGR00805	633	oat sodium-independent organic anion transporter.	98.35
PRK10429	473	melibiose:sodium symporter; Provisional	98.35
PRK11902	402	ampG muropeptide transporter; Reviewed	98.35
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	98.29
PRK10133	438	L-fucose transporter; Provisional	98.27
COG2211	467	MelB Na+/melibiose symporter and related transport	98.23
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	98.1
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	98.05
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	98.02
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	98.0
TIGR00788	468	fbt folate/biopterin transporter. The only functio	97.99
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	97.98
KOG2532	466	consensus Permease of the major facilitator superf	97.98
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	97.96
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	97.93
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	97.92
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	97.91
PRK11462	460	putative transporter; Provisional	97.87
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	97.85
KOG2816	463	consensus Predicted transporter ADD1 (major facili	97.85
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	97.8
KOG3762	618	consensus Predicted transporter [General function	97.76
KOG3810	433	consensus Micronutrient transporters (folate trans	97.71
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	97.7
KOG0637	498	consensus Sucrose transporter and related proteins	97.59
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	97.49
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	97.31
PF12832	77	MFS_1_like: MFS_1 like family	97.29
KOG2533	495	consensus Permease of the major facilitator superf	97.28
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	97.23
KOG2563	480	consensus Permease of the major facilitator superf	97.16
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	97.05
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	96.8
KOG3762	618	consensus Predicted transporter [General function	96.75
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	96.65
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	96.64
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	96.1
KOG2325	488	consensus Predicted transporter/transmembrane prot	96.09
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	95.97
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	95.75
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	95.72
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	95.57
PRK03612	521	spermidine synthase; Provisional	95.57
PF12832	77	MFS_1_like: MFS_1 like family	95.53
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	95.27
KOG3098	461	consensus Uncharacterized conserved protein [Funct	94.07
COG0477	338	ProP Permeases of the major facilitator superfamil	94.0
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	93.99
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	93.75
PF07672	267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	93.44
COG3202	509	ATP/ADP translocase [Energy production and convers	93.22
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	91.57
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	91.4
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	90.47
PRK03612	521	spermidine synthase; Provisional	89.03
PF01733	309	Nucleoside_tran: Nucleoside transporter; InterPro:	88.84
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	87.69
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	87.07
PF01733	309	Nucleoside_tran: Nucleoside transporter; InterPro:	86.02
KOG3626	735	consensus Organic anion transporter [Secondary met	83.39
KOG3097	390	consensus Predicted membrane protein [Function unk	82.26

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=100.00  E-value=1.5e-50  Score=392.37  Aligned_cols=435  Identities=34%  Similarity=0.575  Sum_probs=363.4

Q ss_pred             HHHHHHHHHHHhhhhccceeeccchhhh--------hhhcCC--CCc--hhHHHHHHHHHHHHHHHHHHhhHhhhhhchh
Q 011277           50 FPHVLVATLSSFLFGYHLGVVNEPLESI--------SLDLGF--NGN--TLAEGLVVSMCLGGAFIGSTLSGWIADGVGR  117 (489)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i--------~~~~~~--~~~--~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GR  117 (489)
                      ....+.++++++-.||+.+.+|+..+.+        .+.++.  +.+  +..++.+++.+.+|.++|+++.++++||+||
T Consensus        10 ~~~~~~~~~gsf~~Gy~~~~iNap~~~i~~f~n~t~~~r~g~~~s~~~~~~lwS~~vs~f~iG~~~Gs~~~~~la~~~GR   89 (485)
T KOG0569|consen   10 LLAVIVATLGSFQFGYNIGVVNAPQELIKSFINETLIERYGLPLSDSTLDLLWSLIVSIFFIGGMIGSFSSGLLADRFGR   89 (485)
T ss_pred             HHHHHHHHHhchhhhhhheecCchHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            3345566777788999999999986543        344453  222  2447889999999999999999999999999


Q ss_pred             hHHHHHhHHHHHHHHHHHhh---cchHHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHH
Q 011277          118 RRAFQLCALPMIIGASISAT---TRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSL  194 (489)
Q Consensus       118 r~~~~~~~~~~~i~~~l~~~---~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~  194 (489)
                      |..+..+.++..+++++..+   .++++.++++|++.|+..|......+.|+.|..|++.||....+.+++..+|.+++.
T Consensus        90 K~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~  169 (485)
T KOG0569|consen   90 KNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQ  169 (485)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHH
Confidence            99999999988887777654   578899999999999999999999999999999999999999999999999999998


Q ss_pred             Hhhccc--ccCCchhHHHHHHHHHHHHHHHHHhhhccCChHHHHh-cCCHHHHHHHHHHHhCCCchhHHHHHHHhh---c
Q 011277          195 LIGIPV--KEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYK-KGRTAEAEAEFEKLLGGSHVKSSLAELSKL---D  268 (489)
Q Consensus       195 ~~~~~l--~~~~~~wr~~f~~~~i~~~~~~~~~~~~~Esp~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~  268 (489)
                      +++..-  .+... |++.+....+++++.++...++||||||+.. |+|.+|+++.++++++.++.++..++....   +
T Consensus       170 ~~~l~~ilGt~~~-W~~l~~~~~i~~~~~l~~l~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~~~e~~~~e~~~~  248 (485)
T KOG0569|consen  170 VLGLPSLLGTEDL-WPYLLAFPLIPALLQLALLPFLPESPKYLLIKKGDEEEARKALKFYRGKEDVEAEIEEMLREIEEE  248 (485)
T ss_pred             HHccHHhcCCCcc-hHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHcCCHHHHHHHHHHHhCCCcchhHHHHHHHHHHHh
Confidence            887652  23333 7888888889999999999999999999997 899999999999999987655544433222   2


Q ss_pred             cCCCCcchhHHHhhhccchhH-HHHHHHHHHHHhhhhHHHHHHhHHHHHHhcCCCcc---hHHHHHHHHHHHHHHHHHHH
Q 011277          269 RGDDGDIVKFEELLYGRHFRV-VFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSG---LANVFVGIANLLGSVVAMVL  344 (489)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~~~~g~~~~g~l  344 (489)
                      +.++.+..++++++++++.|. ..+...+...+++++.+.+.+|...+++..|++..   .++...++.+++.++++.++
T Consensus       249 ~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~l  328 (485)
T KOG0569|consen  249 ELEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFL  328 (485)
T ss_pred             ccccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            222335667889999877665 45566778888999999999999999999998754   67888999999999999999


Q ss_pred             hhhcCCchhHHHhhHHHHHHHHHHHHHhhccC-CCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHH
Q 011277          345 MDKLGRKALLQWSFFSMAVSMAIQVAASSSYI-PGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAV  423 (489)
Q Consensus       345 ~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~  423 (489)
                      +||+|||++++.+..++.+..+++........ ...+..+..+...+.+.+.|++|.+|+++.+.+|++|++.|++++++
T Consensus       329 id~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~  408 (485)
T KOG0569|consen  329 IDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSV  408 (485)
T ss_pred             HHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHH
Confidence            99999999999998888877665543321111 11345566778888999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHhhcccCCCCCHHHHHHhhc
Q 011277          424 CMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNVVETKGKSLQEIEIALL  486 (489)
Q Consensus       424 ~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~et~~~~~~e~~~~~~  486 (489)
                      ...++++..++.++.++++.+.+|. ..|..+.+.+++..+++++++||||||+.+||.++++
T Consensus       409 ~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~~lPETkgr~~~eI~~~~~  470 (485)
T KOG0569|consen  409 ATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYRYLPETKGRTPYEIIEELE  470 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHH
Confidence            9999999999999999999999998 7888999999999999999999999999999987765

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=100.00  E-value=8.8e-45  Score=369.36  Aligned_cols=439  Identities=33%  Similarity=0.597  Sum_probs=355.8

Q ss_pred             HHHHHHHHHHHHhhhhcc--ceeeccchhhhhhhcCCCC---ch--hHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHH
Q 011277           49 SFPHVLVATLSSFLFGYH--LGVVNEPLESISLDLGFNG---NT--LAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAF  121 (489)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~---~~--~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~  121 (489)
                      .........++.+.++++  .+...+....+.++...+.   +.  .+.+++.+.+.+|..+|+++.|+++|++|||+.+
T Consensus        43 ~~~~~~~~~~~~~~fg~~g~~g~~s~~~~~~~~~~~~~~~~~~~~~~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l  122 (513)
T KOG0254|consen   43 VILLALVAALGGLLFGYDGDIGGISGALDFLQRFASLYDLSTGEYSVRQGLLTSILNLGALVGSLLAGRLGDRIGRKKTL  122 (513)
T ss_pred             hHHHHHHHHHHHHHhCcccccccchhhHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence            344566778888999997  5666666666665433221   11  2348999999999999999999999999999999


Q ss_pred             HHhHHHHHHHHHHHhhcchHHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccc
Q 011277          122 QLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVK  201 (489)
Q Consensus       122 ~~~~~~~~i~~~l~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~  201 (489)
                      +.+.+.+.+|++++++++|+.++.++|+++|+|.|+...+.+.|++|+.|++.||...+..+....+|...+.+++....
T Consensus       123 ~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~  202 (513)
T KOG0254|consen  123 LLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCINYGTS  202 (513)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999988876654


Q ss_pred             cCCchhHHHHHHHHHHHHHHHHHhhhccCChHHHHhcCCHHHHHHHHHHHhC--CCchhHHHHHHHh-h-ccCC-CCcch
Q 011277          202 EIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLG--GSHVKSSLAELSK-L-DRGD-DGDIV  276 (489)
Q Consensus       202 ~~~~~wr~~f~~~~i~~~~~~~~~~~~~Esp~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~-~~~~-~~~~~  276 (489)
                      +...+||..+++..++.++..+..++.||||+|+.++++.+++++.++++.+  +++.....+++.. . .+.. .....
T Consensus       203 ~~~~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~g~~~~a~~~l~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (513)
T KOG0254|consen  203 KVYAGWRIPLGLALIPAVILALGMLFLPESPRWLIEKGRLEEAKRSLKRLRGLSPEDVEVELELLKIKLLVEAEVAEGKA  282 (513)
T ss_pred             cCCccHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHcCChHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhhhcccccc
Confidence            3312489999999999998888888899999999999999999999999988  3333333333321 0 0110 11111


Q ss_pred             hHHHhhhccchhHHHHHHHHHHHHhhhhHHHHHHhHHHHHHhcCCCc--chHHHHHHHHHHHHHHHHHHHhhhcCCchhH
Q 011277          277 KFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSS--GLANVFVGIANLLGSVVAMVLMDKLGRKALL  354 (489)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~  354 (489)
                      .+.+++.++..+....+..+..++++++.+...+|.+.+++..+.+.  ....+..++.++++.+++..+.||+|||+++
T Consensus       283 ~~~~l~~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~~~~~~~~~~v~~~~t~~~~~lvd~~gRr~ll  362 (513)
T KOG0254|consen  283 SWGELFSPKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDTFLASIILGVVNFLGTLVATYLVDRFGRRKLL  362 (513)
T ss_pred             cHHHhcCcchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence            35556655566777778888999999999999999999999988774  4566778889999999999999999999999


Q ss_pred             HHhhHHHHHHHHHHHHHhhccC----CCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHH
Q 011277          355 QWSFFSMAVSMAIQVAASSSYI----PGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWV  430 (489)
Q Consensus       355 ~~~~~~~~i~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~  430 (489)
                      +.+...+.++++++........    ......+..+...+++...++.+.+|+++.+.+|++|.+.|+++.+++..++++
T Consensus       363 l~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~  442 (513)
T KOG0254|consen  363 LFGAAGMSICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWL  442 (513)
T ss_pred             HHhHHHHHHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHH
Confidence            9999999988887654432211    122345566777888899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHH-HHHhhcccCCCCCHHHHHHhhcC
Q 011277          431 INFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVA-FVKRNVVETKGKSLQEIEIALLP  487 (489)
Q Consensus       431 ~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~et~~~~~~e~~~~~~~  487 (489)
                      .+++....++.+....+....|..++.++.+... +.+.++|||||++++|+++.++.
T Consensus       443 ~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~~fv~~~~pETkg~sleei~~~~~~  500 (513)
T KOG0254|consen  443 WNFLISFFFPFITEALGIGGTFGYFGGICLLSLIIFVFFFVPETKGLTLEEINELFEE  500 (513)
T ss_pred             HHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHheEEcccCCCCcHHHHHHHHHc
Confidence            9999988877776665545667777777777776 88899999999999999987643

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=100.00  E-value=1.1e-43  Score=361.25  Aligned_cols=428  Identities=19%  Similarity=0.267  Sum_probs=297.1

Q ss_pred             HHHHHHHHHHHHhhhhccceeeccchhhhhhhc-C--CCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhH
Q 011277           49 SFPHVLVATLSSFLFGYHLGVVNEPLESISLDL-G--FNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCA  125 (489)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~--~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~  125 (489)
                      ......+++++.+.++||.+.++...|.+..++ +  ...++.+.+++.+.+.+|+.+|+++.|+++||+|||+++.++.
T Consensus        14 ~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~   93 (502)
T TIGR00887        14 HFRAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMEL   93 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence            344567788889999999999998888776643 1  1223445678999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhcch------HHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcc
Q 011277          126 LPMIIGASISATTRN------LIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIP  199 (489)
Q Consensus       126 ~~~~i~~~l~~~~~~------~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~  199 (489)
                      +++.+++++++++.+      +..++++|+++|++.|...+....+++|++|+++||+.+++......+|..+++.++..
T Consensus        94 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~  173 (502)
T TIGR00887        94 IIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALI  173 (502)
T ss_pred             HHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999988766      78899999999999999999999999999999999999999999999988877776543


Q ss_pred             ccc---------------------CCc-hhHHHHHHHHHHHHHHHHHhhhccCChHHHHhcCCHH-HHHHHHHHHhCCCc
Q 011277          200 VKE---------------------IAG-WWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTA-EAEAEFEKLLGGSH  256 (489)
Q Consensus       200 l~~---------------------~~~-~wr~~f~~~~i~~~~~~~~~~~~~Esp~~l~~~~~~~-~~~~~~~~~~~~~~  256 (489)
                      +..                     ... .||++|.+..++.++..+..+++||||+|+..++|.+ ++.+.+++..+.+.
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~lpESpr~l~~~~~~~~~a~~~~~~~~~~~~  253 (502)
T TIGR00887       174 VLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTADVAKDVEQAASDMSAVLQVKI  253 (502)
T ss_pred             HHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhCcchHHHHHHHHHHhcccc
Confidence            210                     011 2899999888888888888889999999998877764 35555555433211


Q ss_pred             hhHHHHHHHhhccCCCCcchhHHHhhhcc---ch-hHHHHHHHHHHHHhhhhHHHHHHhHHHHHHhcCCCcc---h----
Q 011277          257 VKSSLAELSKLDRGDDGDIVKFEELLYGR---HF-RVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSG---L----  325 (489)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~----  325 (489)
                      .+ ..++.++.+++++....+++++++++   +. +........+....+ ..+....+.+.+++..|.+..   .    
T Consensus       254 ~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~y~~~~~~p~i~~~~G~~~~~~~~~~~~  331 (502)
T TIGR00887       254 EA-EPDEVEKASTAVEVPKASWSDFFTHFFKWRHGKHLLGTAGSWFLLDI-AFYGVNLNQKVILSAIGYSPPAATNNAYE  331 (502)
T ss_pred             cc-CcccccchhccccchhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHH-HHHccccccHHHHHHHcCCCCccchhHHH
Confidence            10 01111111111111112455665432   11 222211112221111 112223345555665555321   0    


Q ss_pred             --------HHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHh
Q 011277          326 --------ANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFA  397 (489)
Q Consensus       326 --------~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  397 (489)
                              ......++.+++.+++++++||+|||+++..+..++++++.++....... .  .....  ...+.+...+.
T Consensus       332 ~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~-~--~~~~~--~~~~~~~~~~~  406 (502)
T TIGR00887       332 ELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHL-S--THGFL--AIYVLAQFFAN  406 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhc-c--hhHHH--HHHHHHHHHHh
Confidence                    12333456677888999999999999998887766666655443322111 1  11111  11122223345


Q ss_pred             cCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH----------hCCchhhHHHHHHHHHHHHHHH
Q 011277          398 LGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQ----------LGPQLLYSIFGTFCLMAVAFVK  467 (489)
Q Consensus       398 ~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~----------~g~~~~~~~~~~~~~~~~~~~~  467 (489)
                      .+.+++.+.+.+|++|++.|+++.|+.+.++++++++++.+++.+.+.          .+....+.+++++++++.++. 
T Consensus       407 ~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~-  485 (502)
T TIGR00887       407 FGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILFT-  485 (502)
T ss_pred             cCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHHh-
Confidence            667788888999999999999999999999999999999998888763          233456777887777765544 


Q ss_pred             hhcccCCCCCHHHHHHh
Q 011277          468 RNVVETKGKSLQEIEIA  484 (489)
Q Consensus       468 ~~~~et~~~~~~e~~~~  484 (489)
                      +++||||||++||+|++
T Consensus       486 ~~lpEt~~~~leei~~~  502 (502)
T TIGR00887       486 LLIPETKGKSLEELSGE  502 (502)
T ss_pred             eEeccCCCCCHHhhhCC
Confidence            67899999999999864

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=100.00  E-value=5.3e-42  Score=348.17  Aligned_cols=429  Identities=31%  Similarity=0.523  Sum_probs=312.3

Q ss_pred             HHHHHHHHHHHhhhhccceeeccchhhhhhhcC------CCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHH
Q 011277           50 FPHVLVATLSSFLFGYHLGVVNEPLESISLDLG------FNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQL  123 (489)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~------~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~  123 (489)
                      ...+++++++.+.++|+.+.+++..|.+.+++.      .+.++.+.++..+.+.+|..++++++|+++||+|||++++.
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~   90 (479)
T PRK10077         11 FSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKI   90 (479)
T ss_pred             HHHHHHHHHHHHhcCcccceehHhHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence            445677788999999999999999999988872      12334567899999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHhhc------------chHHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHH
Q 011277          124 CALPMIIGASISATT------------RNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLM  191 (489)
Q Consensus       124 ~~~~~~i~~~l~~~~------------~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~  191 (489)
                      +.++++++.++++++            .++..++++|+++|++.|+..+....+++|++|+++||+++++.+.+..+|..
T Consensus        91 ~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~  170 (479)
T PRK10077         91 AAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQL  170 (479)
T ss_pred             HHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHH
Confidence            999999998887763            22567789999999999999999999999999999999999999999999988


Q ss_pred             HHHHhhcccc--------cCCchhHHHHHHHHHHHHHHHHHhhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHH
Q 011277          192 GSLLIGIPVK--------EIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAE  263 (489)
Q Consensus       192 ~g~~~~~~l~--------~~~~~wr~~f~~~~i~~~~~~~~~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (489)
                      ++++++..+.        +..+ ||+.|++..++.++..+..+++||+|+|+..+++.+++++..++..+.+..+...++
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~g-Wr~~f~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (479)
T PRK10077        171 VVYFVNYFIARSGDASWLNTDG-WRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGNTLATQALQE  249 (479)
T ss_pred             HHHHHHHHHhccCcccccccCC-hHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHcCCHHHHHHHHHHHcCChhHHHHHHH
Confidence            8777654321        2334 799999887777776666778999999988788877776666655443322222222


Q ss_pred             HHhhccCCCCcchhHHHhhhccchhHHHHHHHHHHHHhhhhHHHHHHhHHHHHHhcCCCc---chHHHHHHHHHHHHHHH
Q 011277          264 LSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSS---GLANVFVGIANLLGSVV  340 (489)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~g~~~  340 (489)
                      .....+.+..   +....+. ..............+++..+.+...++.+.+++..+.+.   .......++..+++.++
T Consensus       250 ~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~  325 (479)
T PRK10077        250 IKHSLDHGRK---TGGKLLM-FGVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKTLGASTDIALLQTIIVGVINLTFTVL  325 (479)
T ss_pred             HHHHHHHhhh---hhhhhcc-hhHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHH
Confidence            1111000000   0001110 011111222222233344445556677777777766543   34555677888999999


Q ss_pred             HHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhH
Q 011277          341 AMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKA  420 (489)
Q Consensus       341 ~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~  420 (489)
                      +++++||+|||+++..+...+.++.+.+.......  .  ........++.+..++..+.+|+.+.+++|++|++.|+++
T Consensus       326 ~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~  401 (479)
T PRK10077        326 AIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQ--A--PGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKA  401 (479)
T ss_pred             HHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcC--c--ccHHHHHHHHHHHHHHhccccchhHHHhHhhCChhHHHHH
Confidence            99999999999999888887777766554332111  1  1112222344455556556678888899999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH------HHhCCchhhHHHHHHHHHHHHHHHhhcccCCCCCHHHHHHhhcC
Q 011277          421 MAVCMSVHWVINFFVGLLFLRLL------EQLGPQLLYSIFGTFCLMAVAFVKRNVVETKGKSLQEIEIALLP  487 (489)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~~~~l~------~~~g~~~~~~~~~~~~~~~~~~~~~~~~et~~~~~~e~~~~~~~  487 (489)
                      +|+.+.++++++.+++.+++.+.      +..++...|.+++.+++++.++.+...||||+++++|+|+.++.
T Consensus       402 ~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~  474 (479)
T PRK10077        402 LAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEEMEALWEP  474 (479)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHhh
Confidence            99999999999999987776543      35667777888888877777777778999999999999988754

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=100.00  E-value=1e-41  Score=351.89  Aligned_cols=417  Identities=18%  Similarity=0.227  Sum_probs=302.3

Q ss_pred             chHHHHHHHHHHHHhhhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHH
Q 011277           47 KLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCAL  126 (489)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~  126 (489)
                      +..+..+++++++.+.++++...++..+|.+.++++++.+  +.+++.+.+.+|.++|++++|+++||+|||++++++++
T Consensus       163 ~~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~~gls~~--~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~li  240 (742)
T TIGR01299       163 RFQWALFFVLGLALMADGVEVFVVGFVLPSAEKDLCIPDS--GKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLS  240 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence            3344455677778888899998899999999999988643  56789999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcchHHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccC---
Q 011277          127 PMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEI---  203 (489)
Q Consensus       127 ~~~i~~~l~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~---  203 (489)
                      ++++++++++++++++.++++|+++|++.|+..++...+++|++|+++||+..+++.....+|.++++.++..+...   
T Consensus       241 l~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~  320 (742)
T TIGR01299       241 VNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGW  320 (742)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            99999999999999999999999999999999999999999999999999999999999999988777655332211   


Q ss_pred             ----------CchhHHHHHHHHHHHHHHHHHhhhccCChHHHHhcCCHHHHHHHHHHHhCCCch-----hHH--HHHHHh
Q 011277          204 ----------AGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHV-----KSS--LAELSK  266 (489)
Q Consensus       204 ----------~~~wr~~f~~~~i~~~~~~~~~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~-----~~~--~~~~~~  266 (489)
                                .+ ||+++++.+++.++.++..+++||||+|+..++|.+++.+.++++.+.+..     ...  .++.+.
T Consensus       321 ~~~~g~~~~~~g-WR~l~~i~~lp~ll~ll~~~~lPESPrwL~~~gr~~eA~~iL~~i~~~n~~~~~~~~~~~~~~~~~~  399 (742)
T TIGR01299       321 SFQMGSAYQFHS-WRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDEAWMILKLIHDTNMRAKGHPEKVFSVNHIKT  399 (742)
T ss_pred             hhcccccccccc-HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHCCCHHHHHHHHHHHhcCCCCCcCchhHHHHHHHHHH
Confidence                      23 799999988888888788888999999999999999999998888654321     000  011111


Q ss_pred             hcc-------CCCCc-----------------chhHHHhhhccchhHHHHHHHHHHHHhhhhHHHHHHhHHHHHHhc---
Q 011277          267 LDR-------GDDGD-----------------IVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSA---  319 (489)
Q Consensus       267 ~~~-------~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  319 (489)
                      .+.       .+...                 +..+.+++.++..+..+...+++....+ .++.+..|.|.+++..   
T Consensus       400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~~~tl~l~~~wf~~~~-~yygl~~w~P~~~~~~~~~  478 (742)
T TIGR01299       400 IHQEDELIEIESDTGTWYQRCFVRALSEGGGIWGNFLRCFNPEVREITIKLMGVWFTLSF-GYYGLSVWFPDMIKHLQAD  478 (742)
T ss_pred             hhhhhhhhcccccccchhhcchhhhhhhhhhHHHHHHHHcCccHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence            000       00000                 0134556665555555555555544443 3444555555443210   


Q ss_pred             ---------------------------------------CC---------------------------------------
Q 011277          320 ---------------------------------------GL---------------------------------------  321 (489)
Q Consensus       320 ---------------------------------------~~---------------------------------------  321 (489)
                                                             ++                                       
T Consensus       479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~  558 (742)
T TIGR01299       479 DYAALTKNFPGDKVAHFSFNFTLENQIHRGGEYDNDKFIGLKFKSVSFEDSLFEECTFDDVTSSNTFFKNCTFIDTLFEN  558 (742)
T ss_pred             HHHhhhccccccchhccccccchhhhhccccccccchhhcccccccccccccccccceeeccccchhhhccchhhhhccc
Confidence                                                   00                                       


Q ss_pred             -------------------------------------CcchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHH
Q 011277          322 -------------------------------------SSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVS  364 (489)
Q Consensus       322 -------------------------------------~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~  364 (489)
                                                           ......+..+++.++|.+++++++||+|||+++..+.++.+++
T Consensus       559 ~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~  638 (742)
T TIGR01299       559 TDFEEYKFIDSEFQNCSFLHNKEGCPIDFDGDDEGAYMIYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCIS  638 (742)
T ss_pred             cchhhhhhhhhhhhhccccccCCccCccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence                                                 0012244566888999999999999999999998887777776


Q ss_pred             HHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011277          365 MAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLE  444 (489)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~  444 (489)
                      +++.....+     .. . . +...+++.+ +..+..+..+.+++|++|++.|++++|+++++++++++++|.+.+.+.+
T Consensus       639 ~ll~~~~~s-----~~-~-l-l~~~~l~g~-~~~~~~~~~~a~~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~  709 (742)
T TIGR01299       639 CFFLSFGNS-----ES-A-M-IALLCLFGG-LSIAAWNALDVLTVELYPSDKRATAFGFLNALCKAAAVLGILIFGSFVG  709 (742)
T ss_pred             HHHHHHHcc-----HH-H-H-HHHHHHHHH-HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            655443221     11 1 1 111112222 1223345667789999999999999999999999999999998877665


Q ss_pred             HhCCchhhHHHHHHHHHHHHHHHhhcccCCCCCH
Q 011277          445 QLGPQLLYSIFGTFCLMAVAFVKRNVVETKGKSL  478 (489)
Q Consensus       445 ~~g~~~~~~~~~~~~~~~~~~~~~~~~et~~~~~  478 (489)
                      . +...++.+++++.+++.++. ..+|||+++.+
T Consensus       710 ~-~~~~pf~i~a~~lll~~ll~-~~LPET~~~~l  741 (742)
T TIGR01299       710 I-TKAAPILFASAALACGGLLA-LKLPDTRGQVL  741 (742)
T ss_pred             h-hhHHHHHHHHHHHHHHHHHH-HhCCCCccccc
Confidence            3 34456666666666655544 46799999865

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=100.00  E-value=4.3e-48  Score=389.70  Aligned_cols=430  Identities=33%  Similarity=0.572  Sum_probs=325.1

Q ss_pred             HHHHHhhhhccceeeccchhhhh--hhcCCCC-------chhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHH
Q 011277           56 ATLSSFLFGYHLGVVNEPLESIS--LDLGFNG-------NTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCAL  126 (489)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~i~--~~~~~~~-------~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~  126 (489)
                      ..++.+.++||...++...+...  .+...+.       ++...++..+...+|..+|+++.|.++||+|||+++..+.+
T Consensus         5 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~   84 (451)
T PF00083_consen    5 ASLGGFLFGYDLGLIGSFASLLGFLQFFGWSSSESSCEKSSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISAL   84 (451)
T ss_pred             eHHHHHHHHHHHHHHhhHHhhhhhhhccccccccccccchHHHHHHHHHHHHhhhccccccccccccccccccccccccc
Confidence            45566889999887776655444  2222221       12346789999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcc---hHHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccC
Q 011277          127 PMIIGASISATTR---NLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEI  203 (489)
Q Consensus       127 ~~~i~~~l~~~~~---~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~  203 (489)
                      +..+++++.++++   |++.+.++|+++|++.|+..+....|+.|..|+++||+..++.+.+..+|.+++..++......
T Consensus        85 ~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~  164 (451)
T PF00083_consen   85 LMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYY  164 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            9999999999999   9999999999999999999999999999999999999999999999999988888877655433


Q ss_pred             Cc--hhHHHHHHHHHHHHHHHHHhhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHh
Q 011277          204 AG--WWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEEL  281 (489)
Q Consensus       204 ~~--~wr~~f~~~~i~~~~~~~~~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (489)
                      .+  .||+.++...++.++..+...++||||+|+..++|.+|+++.+++.++.+..+++.++..+..+++...+..+.++
T Consensus       165 ~~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  244 (451)
T PF00083_consen  165 SDNWGWRILLIFGAIPSLLVLLLRFFLPESPRWLLSKGRDEEAEKVLRKLRGKEIEDEEIEEIKAEKKESQESKASWRDL  244 (451)
T ss_pred             cccccccccccccccccccccccccccccccceecccccccccccccccccccccccccccccccccccccccceeeeec
Confidence            22  3899999988888877777889999999999999999999888886554333332222222111111112445566


Q ss_pred             hhccc-hhHHHHHHHHHHHHhhhhHHHHHHhHHHHHHhcCCCcc-hHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhH
Q 011277          282 LYGRH-FRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSG-LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFF  359 (489)
Q Consensus       282 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~  359 (489)
                      ++++. .+.......+...+.+.+.+...+|.+.+++..+.+.. ..+....+..+++.+++.++.||+|||+++..+..
T Consensus       245 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~  324 (451)
T PF00083_consen  245 FRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNSFLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLL  324 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            66544 33444444455555566666666777777777666555 45566667788888888899999999999888877


Q ss_pred             HHHHHHHHHHHHhhccCCCc-hhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHH
Q 011277          360 SMAVSMAIQVAASSSYIPGS-ASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLL  438 (489)
Q Consensus       360 ~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~  438 (489)
                      .+.++...+........... ......+.....+...+..+.+++.+.+.+|++|++.|+++.+++..++++++++.+.+
T Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~  404 (451)
T PF00083_consen  325 LMAICSLILGIIFFLGVSSSSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFL  404 (451)
T ss_pred             cccccccccccccccccccccccccccceeeeeccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            76666555430000011110 11122223334455567778899999999999999999999999999999999999988


Q ss_pred             HHHHHHHhCCchhhHHHHHHHHHHHHHHHhhcccCCCCCHHHHHHhh
Q 011277          439 FLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNVVETKGKSLQEIEIAL  485 (489)
Q Consensus       439 ~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~et~~~~~~e~~~~~  485 (489)
                      .+.+.+..+....+.++++++++..++.+.++||||||+++|+|++|
T Consensus       405 ~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpET~g~~l~ei~~~f  451 (451)
T PF00083_consen  405 FPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPETKGKTLEEIQEMF  451 (451)
T ss_pred             cccccccccccccchhhHHHHHHHHhheeEEEeeCCCCCHHHHHhhC
Confidence            88877777756778888888888888888999999999999999875

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=100.00  E-value=2.9e-38  Score=320.55  Aligned_cols=431  Identities=32%  Similarity=0.612  Sum_probs=308.6

Q ss_pred             HHHHHHHHHHHhhhhccceeeccchhhhhhhcCCC------CchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHH
Q 011277           50 FPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFN------GNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQL  123 (489)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~------~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~  123 (489)
                      ....+++.++.++.+++...++...|.+..+++.+      .++.+.+++.+.+.++..++++++|+++||+|||+++..
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~  106 (481)
T TIGR00879        27 ALLSLIAAIGGLMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLI  106 (481)
T ss_pred             HHHHHHHHHHHHhcccccchhhhhhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHH
Confidence            44455667777888999999999999998888877      446678999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHhhc---chHHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhh---
Q 011277          124 CALPMIIGASISATT---RNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIG---  197 (489)
Q Consensus       124 ~~~~~~i~~~l~~~~---~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~---  197 (489)
                      +.+++.++.++++.+   .+++.++++|+++|++.|...+....+++|++|+++|+++.++++.+..+|..++++++   
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~  186 (481)
T TIGR00879       107 IALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGK  186 (481)
T ss_pred             HHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHh
Confidence            999999999988554   44558999999999999999999999999999999999999999999999999999988   


Q ss_pred             cccccCCchhHHHHHHHHHHHHHHHHHhhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHH-H---HHHh-hccCCC
Q 011277          198 IPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSL-A---ELSK-LDRGDD  272 (489)
Q Consensus       198 ~~l~~~~~~wr~~f~~~~i~~~~~~~~~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~-~~~~~~  272 (489)
                      ....+..+ ||+.|++..+..++..+..+++||+|+++..+++.++.++..++..+.+...... +   .... .+.+..
T Consensus       187 ~~~~~~~~-w~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (481)
T TIGR00879       187 VSLNNTLG-WRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDELELIDIKRSIEKR  265 (481)
T ss_pred             hcCCCCcc-HHHHHHHHHHHHHHHHHHHhcCCCChHHHHHcCChHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHh
Confidence            55444455 7999998766666666667789999998776666655544444332221111100 0   0000 000000


Q ss_pred             CcchhHHHhhhcc--chhHHHHHHHHHHHHhhhhHHHHHHhHHHHHHhcCCCc---chHHHHHHHHHHHHHHHHHHHhhh
Q 011277          273 GDIVKFEELLYGR--HFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSS---GLANVFVGIANLLGSVVAMVLMDK  347 (489)
Q Consensus       273 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~g~~~~g~l~dr  347 (489)
                      .....+.+.++..  ..+..+....+..+......+...++.+...+..+.+.   +.......++.+++.+++++++||
T Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~  345 (481)
T TIGR00879       266 SVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDR  345 (481)
T ss_pred             hccccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            0011122222211  12223333333333333333344556666666666654   455666778888999999999999


Q ss_pred             cCCchhHHHhhHHHHHHHHHHHHHhhccCCCc--hhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHH
Q 011277          348 LGRKALLQWSFFSMAVSMAIQVAASSSYIPGS--ASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCM  425 (489)
Q Consensus       348 ~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~  425 (489)
                      +|||+.+..+..+..++...............  ......+....++...++.+..++...+..|.+|++.|++++++.+
T Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~  425 (481)
T TIGR00879       346 FGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAV  425 (481)
T ss_pred             hcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHH
Confidence            99999888876666665554432211111110  0012222233444555666777888888899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHhhcccCCCCCHHHH
Q 011277          426 SVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNVVETKGKSLQEI  481 (489)
Q Consensus       426 ~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~et~~~~~~e~  481 (489)
                      ...++++++++.+.+.+.+..++...|.+++++++++.+......||+|+++++|+
T Consensus       426 ~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  481 (481)
T TIGR00879       426 AANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTLEEI  481 (481)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHHHHHheecccCCCCChhhC
Confidence            99999999999998888888888888888888888888877778899999987653

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=100.00  E-value=4e-40  Score=306.64  Aligned_cols=430  Identities=20%  Similarity=0.319  Sum_probs=299.0

Q ss_pred             cchHHHHHHHHHHHHhhhhccceeeccchhhhhhhcCC-C-----CchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhH
Q 011277           46 WKLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGF-N-----GNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRR  119 (489)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~-----~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~  119 (489)
                      |+ ..+.+++...+.|.|+||+..++...|-+...+.- +     ..+...+.+....++|.++||+++|+++||+|||+
T Consensus        37 w~-~fk~i~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~  115 (538)
T KOG0252|consen   37 WK-HFKAIIIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKK  115 (538)
T ss_pred             HH-HHHHHHHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchh
Confidence            44 35677888999999999999999888766654421 1     12233467888899999999999999999999999


Q ss_pred             HHHHhHHHHHHHHHHHhhcch-------HHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHH
Q 011277          120 AFQLCALPMIIGASISATTRN-------LIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMG  192 (489)
Q Consensus       120 ~~~~~~~~~~i~~~l~~~~~~-------~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~  192 (489)
                      ++...++++++++++++++..       ..++.+.|++.|+|.|+.+|.+.++.+|....+.||...+.+...+.+|.+.
T Consensus       116 vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~Gila  195 (538)
T KOG0252|consen  116 VYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILA  195 (538)
T ss_pred             hhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchhHhh
Confidence            999999999999998887532       4677889999999999999999999999999999999988887777777766


Q ss_pred             HHHhhccc--------c------cCCchhHHHHHHHHHHHHHHHHHhhhccCChHHHHhc-CCHHHHHHHHHHHhCCCch
Q 011277          193 SLLIGIPV--------K------EIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKK-GRTAEAEAEFEKLLGGSHV  257 (489)
Q Consensus       193 g~~~~~~l--------~------~~~~~wr~~f~~~~i~~~~~~~~~~~~~Esp~~l~~~-~~~~~~~~~~~~~~~~~~~  257 (489)
                      |.+++..+        .      +..+-||..|.+..+|+++.+..++.+|||++|-... ++.+.+.++.++...   .
T Consensus       196 G~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y~al~~~~~~~a~~d~~k~~~---~  272 (538)
T KOG0252|consen  196 GGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFRLKMPETARYTALVSKKLKQAAGDMKKVLS---V  272 (538)
T ss_pred             ccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHhhcCHhhhhhccccccc---c
Confidence            66554321        1      1223499999999999999999999999999986332 233333322222111   1


Q ss_pred             hHHHHHHHh--hccCCCCcchh-HHHhhhccchhHHHHHHHHHHHHhhhhHHHHHHhHHHHHHhcCCCcc----------
Q 011277          258 KSSLAELSK--LDRGDDGDIVK-FEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSG----------  324 (489)
Q Consensus       258 ~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------  324 (489)
                        ..++.+.  .+...+.+... +.+.+..++-+.++.....+...- ..++....+...+++..+...+          
T Consensus       273 --~~~~~~~~~~~~~~~~~~~~~F~~~f~~~hg~~Llgt~~~WFllD-iafy~~nL~~s~I~~~ig~~~~~~~~~~~~~v  349 (538)
T KOG0252|consen  273 --DIEAESTAESDVPPPSNSFGLFSRLFLRWHGKHLLGTAGTWFLLD-IAFYGQNLFQSVIFSAIGVIPSANTYHELFKV  349 (538)
T ss_pred             --ccchhhccccCCCCcccccchHHHHHHHHHHHHHHHHHHHHHhhh-hhhhccccHHHHHHHhhccCCCcchHHHHHHH
Confidence              1111001  01111111111 333333334444433222222211 1122222344555554443322          


Q ss_pred             --hHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccc
Q 011277          325 --LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGP  402 (489)
Q Consensus       325 --~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  402 (489)
                        ...++...+.++|..++..++|+.|||++.+.++.++.+..+.+...+.+.. .... .+.  ...+..+..+.|.+.
T Consensus       350 A~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~~~~-~~~G-f~v--~y~l~~ff~NFGPn~  425 (538)
T KOG0252|consen  350 AEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYNQLE-NTIG-FVV--LYSLTFFFGNFGPNA  425 (538)
T ss_pred             HHHHHHHHHHccCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCccccc-ccCc-eee--hHHHHHHHHhcCCCc
Confidence              1123333455567788888999999999999999988887776654443221 1111 111  112223445777888


Q ss_pred             cccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-----HhCCchhhHHHHHHHHHHHHHHHhhcccCCCCC
Q 011277          403 VPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLE-----QLGPQLLYSIFGTFCLMAVAFVKRNVVETKGKS  477 (489)
Q Consensus       403 ~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~et~~~~  477 (489)
                      .+.++.+|.||++.|+++.|++...+.++++++...+.++.+     ..+...++.+++.+++++.++. .++||||||+
T Consensus       426 ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T-~l~pEtk~~~  504 (538)
T KOG0252|consen  426 TTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFT-LLIPETKGKS  504 (538)
T ss_pred             eeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHhee-EEeecccccC
Confidence            888899999999999999999999999999999999999888     7788899999999999987765 4688999999


Q ss_pred             HHHHHHhhcC
Q 011277          478 LQEIEIALLP  487 (489)
Q Consensus       478 ~~e~~~~~~~  487 (489)
                      ++|++++..+
T Consensus       505 leei~~e~~~  514 (538)
T KOG0252|consen  505 LEEISNEEES  514 (538)
T ss_pred             HHHhcChhhc
Confidence            9999876543

>TIGR00898 2A0119 cation transport protein

Probab=100.00  E-value=2.8e-37  Score=315.45  Aligned_cols=390  Identities=23%  Similarity=0.315  Sum_probs=281.2

Q ss_pred             cchhhhhhhcCCCC-chhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhcchHHHHHHHHHH
Q 011277           72 EPLESISLDLGFNG-NTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFV  150 (489)
Q Consensus        72 ~~~~~i~~~~~~~~-~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l~~~R~l  150 (489)
                      ...|.+.+|++++. ++.+.++..+.+.+|+.+|++++|+++||+|||+++.++.++.++++++.++++|++.++++|++
T Consensus       110 ~~~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l  189 (505)
T TIGR00898       110 TFSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLL  189 (505)
T ss_pred             cccccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence            45678899999862 24456899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHHHHHhhhccC
Q 011277          151 VGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAE  230 (489)
Q Consensus       151 ~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~i~~~~~~~~~~~~~E  230 (489)
                      .|++.+...+....++.|++|+++|++..+++..+..+|.+++++++..+.+    ||+.|++..++.++..+..+++||
T Consensus       190 ~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~----wr~~~~~~~i~~~~~~~~~~~~~e  265 (505)
T TIGR00898       190 VGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPD----WRWLQLAVSLPTFLFFLLSWFVPE  265 (505)
T ss_pred             HHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhH----HHHHHHHHHHHHHHHHHHHHhcCC
Confidence            9999999999999999999999999999999999999999988888765543    799999887777777777788999


Q ss_pred             ChHHHHhcCCHHHHHHHHHHHhCCCchh--HHHHHHH-hhccCCCCcchhHHHhhhccchhHHHHHHHHHHHHhhhhHHH
Q 011277          231 SPHWLYKKGRTAEAEAEFEKLLGGSHVK--SSLAELS-KLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINA  307 (489)
Q Consensus       231 sp~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (489)
                      ||+|+..+++.+++.+.+++..+.+..+  ....+.. +.+..++.++..++++++++.++...+......+..     .
T Consensus       266 sp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-----~  340 (505)
T TIGR00898       266 SPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFTT-----A  340 (505)
T ss_pred             ChHHHHHCCCHHHHHHHHHHHHHHcCCCCCHHHHhhhhhhhhhhccCCCcHHHHhCChHHHHHHHHHHHHHHHH-----H
Confidence            9999999999888877776654322111  1110000 000011112235677787777666554332222211     1


Q ss_pred             HHHhH-HHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHH
Q 011277          308 IFYFS-SSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSV  386 (489)
Q Consensus       308 ~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  386 (489)
                      ..++. ....+..+.+........++..+++.++.+++.||+|||+.+..+.+..+++.+++.....     .... ...
T Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~-----~~~~-~~~  414 (505)
T TIGR00898       341 FSYYGLVLDLGNLGGNIYLDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPV-----DLYF-LRT  414 (505)
T ss_pred             HHHHHHhccccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCC-----CchH-HHH
Confidence            11221 1122233344455666777888899999999999999999988877776666555443221     1111 111


Q ss_pred             HHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHH
Q 011277          387 GGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFV  466 (489)
Q Consensus       387 ~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~  466 (489)
                      ...++...+ ..+..+..+.+.+|++|++.|++++|+.+.+++++++++|.+..  .+..+....+.+++++.+++.+..
T Consensus       415 ~~~~~~~~~-~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~--~~~~~~~~~~~~~~~~~~~~~~~~  491 (505)
T TIGR00898       415 ALAVLGKFG-ITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY--LGEKWLFLPLVLFGGLALLAGILT  491 (505)
T ss_pred             HHHHHHHHH-HHHHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH--HHHHHHhhHHHHHHHHHHHHHHHH
Confidence            111111111 11223455678999999999999999999999999999998876  344455566777777766665544


Q ss_pred             HhhcccCCCCCHHH
Q 011277          467 KRNVVETKGKSLQE  480 (489)
Q Consensus       467 ~~~~~et~~~~~~e  480 (489)
                       ..+|||++++++|
T Consensus       492 -~~lpet~~~~l~~  504 (505)
T TIGR00898       492 -LFLPETKGVPLPE  504 (505)
T ss_pred             -HcCcCCCCCCCCC
Confidence             4689999998876

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=100.00  E-value=5.9e-36  Score=303.47  Aligned_cols=396  Identities=19%  Similarity=0.240  Sum_probs=257.4

Q ss_pred             HHHHHHHHHhhhhccceeeccchhhhhhhcCCCCchhH---HHH-HHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHH
Q 011277           52 HVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLA---EGL-VVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALP  127 (489)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~---~~~-~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~  127 (489)
                      ..+...++.++++||..+++...|.+.++++.+.++..   ..+ ..+..++|+.+|++++|+++||+|||+++..++++
T Consensus        17 ~~~~~~~g~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~l   96 (490)
T PRK10642         17 AITAASLGNAMEWFDFGVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITIVI   96 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence            35566789999999999999999999999875544321   112 24778899999999999999999999999999999


Q ss_pred             HHHHHHHHhhcchHHH--------HHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcc
Q 011277          128 MIIGASISATTRNLIG--------MLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIP  199 (489)
Q Consensus       128 ~~i~~~l~~~~~~~~~--------l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~  199 (489)
                      ++++++++++++|+.+        ++++|+++|++.|+.++....+++|++|+++||++.++...+..+|..++..+...
T Consensus        97 ~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~~  176 (490)
T PRK10642         97 MSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVL  176 (490)
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999875        78999999999999999999999999999999999999988888887666644322


Q ss_pred             c----c----cCCchhHHHHHHHHHHHHHHHHHhhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCC
Q 011277          200 V----K----EIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGD  271 (489)
Q Consensus       200 l----~----~~~~~wr~~f~~~~i~~~~~~~~~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (489)
                      +    .    ...+ ||+.|++.+++.++.+++...+||||+|...+++.++.++       .           ..+   
T Consensus       177 ~~~~~~~~~~~~~g-WR~~f~i~~~~~l~~~~~~~~~~esp~~~~~~~~~~~~~~-------~-----------~~~---  234 (490)
T PRK10642        177 ISTIVGEANFLDWG-WRIPFFIALPLGIIGLYLRHALEETPAFQQHVDKLEQGDR-------E-----------GLQ---  234 (490)
T ss_pred             HHHhcCHHHhcCcc-HHHHHHHHHHHHHHHHHHHHcCCCChhHHHHHHhhhhhcc-------c-----------ccc---
Confidence            1    1    1234 7999999776666555566778999987543221111000       0           000   


Q ss_pred             CCcchhHHHhhhccchhHHHHHHHHHHHHhhhhHHHHHHhHHHHHH-hcCCCc---chHHHHHHHHHHHHHHHHHHHhhh
Q 011277          272 DGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFK-SAGLSS---GLANVFVGIANLLGSVVAMVLMDK  347 (489)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~i~~~~g~~~~g~l~dr  347 (489)
                      +.+..++++++++ +.+............. ..++....+.+..++ ..+.+.   ........++.+++.++.|+++||
T Consensus       235 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr  312 (490)
T PRK10642        235 DGPKVSFKEIATK-HWRSLLTCIGLVIATN-VTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDR  312 (490)
T ss_pred             ccccCCHHHHHHH-hHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            0011234444443 2222222221211111 122233334454443 345443   234455567788889999999999


Q ss_pred             cCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHH
Q 011277          348 LGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSV  427 (489)
Q Consensus       348 ~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~  427 (489)
                      +|||+.+..+.....+..........   ......  .....++..+..+.+.+ ....+.+|++|++.|++++|+...+
T Consensus       313 ~grr~~~~~~~~~~~~~~~~~~~~~~---~~~~~~--~~~~~~~~g~~~~~~~g-~~~~~~~~~~p~~~Rg~~~g~~~~~  386 (490)
T PRK10642        313 FGRRPFVILGSVALFVLAIPAFILIN---SNVIGL--IFAGLLMLAVILNCFTG-VMASTLPAMFPTHIRYSALAAAFNI  386 (490)
T ss_pred             hccHHHHHHHHHHHHHHHHHHHHHHh---CCCHHH--HHHHHHHHHHHHHHHHH-HHHHHHHHHCCCccchHHHHHHHHH
Confidence            99999877665433332222111111   111111  11122222222222222 2334678999999999999998888


Q ss_pred             HHHHHHHHHHHHHHHHHHhC-CchhhHHHHHHHHHHHHHHHhhcccCCCCCH
Q 011277          428 HWVINFFVGLLFLRLLEQLG-PQLLYSIFGTFCLMAVAFVKRNVVETKGKSL  478 (489)
Q Consensus       428 ~~~~~~~~~~~~~~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~et~~~~~  478 (489)
                      +++++.++|.+...+.+..+ +...+.+..+++++..+.. ..+|||+++.+
T Consensus       387 ~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~-~~~pes~~~~~  437 (490)
T PRK10642        387 SVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITG-VTMKETANRPL  437 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHH-HHhccccCCCC
Confidence            88888889988887776554 3334444444444444433 35699977654

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=100.00  E-value=4e-35  Score=265.10  Aligned_cols=387  Identities=21%  Similarity=0.281  Sum_probs=278.6

Q ss_pred             hhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhcchHHHHHHHHHHHhh
Q 011277           74 LESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGT  153 (489)
Q Consensus        74 ~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l~~~R~l~G~  153 (489)
                      .|.+.+..+.  +..+..+++...+.|..+|+..+|.++|++|||+.+....+...+..++.+.++|+.++.+.|.+.|+
T Consensus       101 ~~~l~~~w~~--s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~~~is~~spnf~~L~~f~~l~~~  178 (528)
T KOG0253|consen  101 LPALDEVWGP--SEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVFGVISGASPNFASLCVFRALWGF  178 (528)
T ss_pred             HHHHHhhhch--hhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHHHHHHhhcCCCCeehhhHHHHHHhc
Confidence            3445666664  46677899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHHHHHhhhccCChH
Q 011277          154 GMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPH  233 (489)
Q Consensus       154 g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~i~~~~~~~~~~~~~Esp~  233 (489)
                      |.|+ .|...++-.|.-|..+|+..+-.. ..+.+|......+........| |||.......|..++....+++|||||
T Consensus       179 g~gg-~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~g-wr~~l~~~~~pl~~~a~f~~w~~ESpR  255 (528)
T KOG0253|consen  179 GVGG-LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNFG-WRYLLFTSSTPLMFAARFLVWVYESPR  255 (528)
T ss_pred             cCCC-ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHhHHHHHHHHHhhcccCcc
Confidence            9999 777778889999999999888777 8888898887777666555566 688877777888888888899999999


Q ss_pred             HHHhcCCHHHHHHHHHHHhCCCchh------------HHHHHHHhhcc---C-CCCcchhHHHhhhccchhHHHHHHHHH
Q 011277          234 WLYKKGRTAEAEAEFEKLLGGSHVK------------SSLAELSKLDR---G-DDGDIVKFEELLYGRHFRVVFIGSTLF  297 (489)
Q Consensus       234 ~l~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (489)
                      |+..+++++++.+.++++.+.+..+            ...+|-.+.++   + .+....+..+++...-.|..+....++
T Consensus       256 f~~~~G~~~kAletL~kiArmNg~qlplgvl~~s~~~~~e~e~~~~~~~~~~a~ke~rg~~~nLlsp~lrkttlllw~iw  335 (528)
T KOG0253|consen  256 FYLAKGDDYKALETLHKIARMNGKQLPLGVLESSAIDRQEQEESDLDDSKSSAAKEVRGGTTNLLSPKLRKTTLLLWRIW  335 (528)
T ss_pred             hhhhcCChHHHHHHHHHHHHhcCCCCCcceeeeehhhhhhhhhhchhhhhhccccccccchHhhcChHHHHHHHHHHHHH
Confidence            9999999999988888876543221            11111111111   1 112223455555533334444444443


Q ss_pred             HHHhhhhHHHHHHhHHHHHHhcCC---------------------C---cchHHHHHHHHHHHHHHHHHHHhhhcCCchh
Q 011277          298 ALQQLSGINAIFYFSSSVFKSAGL---------------------S---SGLANVFVGIANLLGSVVAMVLMDKLGRKAL  353 (489)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~---------------------~---~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~  353 (489)
                      +...+..+. ........++ .|.                     .   ...-.++.....++|.++.++++||+|||+.
T Consensus       336 fgnafsyyg-~VLlttelfq-sgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~iverlGRKkT  413 (528)
T KOG0253|consen  336 FGNAFSYYG-SVLLTTELFQ-SGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITGVIVERLGRKKT  413 (528)
T ss_pred             HhhHHHHHH-HHHHHHHHHh-ccCccccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHHHHHHhcchhH
Confidence            333222211 1111112221 111                     0   1123467778999999999999999999999


Q ss_pred             HHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHH
Q 011277          354 LQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINF  433 (489)
Q Consensus       354 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~  433 (489)
                      +...++.++++.+++......   ...      ..+++..-.|.-+...+.++|.+|+||+..|+++.|.+++++++++.
T Consensus       414 Mal~l~~f~iflfll~~c~~r---n~~------tvllf~arafisg~fqvaYvYtPEVyPTavRatgvGtcSsmaRIggI  484 (528)
T KOG0253|consen  414 MALSLILFGIFLFLLTTCKTR---NAY------TVLLFTARAFISGAFQVAYVYTPEVYPTAVRATGVGTCSSMARIGGI  484 (528)
T ss_pred             HHHHHHHHHHHHHHHHHhcCc---chh------HHHHHHHHHHHhchheEEEEecCcccchhhhhcchhhhhhHHhhhhh
Confidence            988888777776665433221   111      11122222333444567889999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHhhcccCCCCCH
Q 011277          434 FVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNVVETKGKSL  478 (489)
Q Consensus       434 ~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~et~~~~~  478 (489)
                      +.|++.  +........+..+++++++++.+.+.++--|||||++
T Consensus       485 ~~p~iA--~~~e~s~sl~i~vy~~~~ilagIavcffPiEtkGR~l  527 (528)
T KOG0253|consen  485 FSPVIA--MRAELSTSLPIFVYGALFILAGIAVCFFPIETKGRSL  527 (528)
T ss_pred             hhhHHH--HHhccceeehHHHHHHHHHHHHHHheeeeeccCCCCC
Confidence            999876  3333444566778888888888877777889999975

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=100.00  E-value=1.1e-33  Score=282.59  Aligned_cols=382  Identities=18%  Similarity=0.187  Sum_probs=238.3

Q ss_pred             HHHHHHHHHhhhhccceeeccchhhhhhhcCCC-CchhHHHHHHHH---HHHHHHHHHHhhHhhhhhchhhHHHHHhHHH
Q 011277           52 HVLVATLSSFLFGYHLGVVNEPLESISLDLGFN-GNTLAEGLVVSM---CLGGAFIGSTLSGWIADGVGRRRAFQLCALP  127 (489)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~s~---~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~  127 (489)
                      .+...+++.+++.+|...++...|.+.+|++.+ .++.+.+...+.   .+++..+|++++|+++||+|||+++..++++
T Consensus        23 ~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~  102 (432)
T PRK10406         23 AIVGASSGNLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLISVCM  102 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence            345567788899999998888899999998632 223333333344   4445559999999999999999999999999


Q ss_pred             HHHHHHHHhhcchHH--------HHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcc
Q 011277          128 MIIGASISATTRNLI--------GMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIP  199 (489)
Q Consensus       128 ~~i~~~l~~~~~~~~--------~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~  199 (489)
                      ++++++++++++++.        .+++.|+++|++.|+.++....+++|++|+++||++.++...+...|.+++++++..
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~  182 (432)
T PRK10406        103 MCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVV  182 (432)
T ss_pred             HHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999998874        588999999999999999999999999999999999999888888887777765433


Q ss_pred             cc--------cCCchhHHHHHHHHHHHHHHHHHhhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCC
Q 011277          200 VK--------EIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGD  271 (489)
Q Consensus       200 l~--------~~~~~wr~~f~~~~i~~~~~~~~~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (489)
                      +.        +..+ ||++|++.+++.++..+.....||+|++..      +  +  +                  +   
T Consensus       183 ~~~~~~~~~~~~~g-Wr~~F~i~~~~~ll~~~~~~~~~e~~~~~~------~--~--~------------------~---  230 (432)
T PRK10406        183 LQQTLEDAELREWG-WRIPFALGAVLAVVALWLRRQLDETSQQET------R--A--L------------------K---  230 (432)
T ss_pred             HHHhCCHHHHhccc-hHHHHHHHHHHHHHHHHHHhcCCCCchHHH------h--h--h------------------c---
Confidence            22        1235 799999887777766655666788764310      0  0  0                  0   


Q ss_pred             CCcchhHHHhhhccchhHHHHHHHHHHHHhhhhHHHHHHhHHHHH-HhcCCCc---chHHHHHHHHHHHHHHHHHHHhhh
Q 011277          272 DGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVF-KSAGLSS---GLANVFVGIANLLGSVVAMVLMDK  347 (489)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~i~~~~g~~~~g~l~dr  347 (489)
                        +..++++++++++.+.......+  .... ..+....|.+..+ +..+.+.   +.......+...++..+.|+++||
T Consensus       231 --~~~~~~~l~~~~~~~~~~~~~~~--~~~~-~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr  305 (432)
T PRK10406        231 --EAGSLKGLWRNRRAFIMVLGFTA--AGSL-CFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDK  305 (432)
T ss_pred             --ccccHHHHHhhHHHHHHHHHHHH--HHHH-HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              00123444544433322221111  1111 1222333444444 3345543   233344455666777888999999


Q ss_pred             cCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHH
Q 011277          348 LGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSV  427 (489)
Q Consensus       348 ~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~  427 (489)
                      ++||+.+.....+..+........... . ......+.+.....+...+.   .+....+.+|.+|++.|++++|+++.+
T Consensus       306 ~grr~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~e~fp~~~r~t~~g~~~~~  380 (432)
T PRK10406        306 IGRRTSMLCFGSLAALFTVPILSALQN-V-SSPYAAFGLVMCALLIVSFY---TSISGILKAEMFPAQVRALGVGLSYAV  380 (432)
T ss_pred             cCchHHHHHHHHHHHHHHHHHHHHHHc-C-CcHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHCCCCccchhhhHHHHH
Confidence            999987766544333322222111111 0 11111111111111111111   123456789999999999999999998


Q ss_pred             HHHH-HHHHHHHHHHHHHHhCCc-hhhHHHHHHHHHHHHHHHhhcccCCCCCH
Q 011277          428 HWVI-NFFVGLLFLRLLEQLGPQ-LLYSIFGTFCLMAVAFVKRNVVETKGKSL  478 (489)
Q Consensus       428 ~~~~-~~~~~~~~~~l~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~et~~~~~  478 (489)
                      +++. +...|.+.. +.+..|.. ..+.+.+++++++.+..+  ..|++||+.
T Consensus       381 g~~~~g~~~p~~~~-~l~~~g~~~~~~~~~~~~~~i~~~~~~--~l~~~~~~~  430 (432)
T PRK10406        381 ANALFGGSAEYVAL-SLKSIGMETAFFWYVTLMAVVAFLVSL--MLHRKGKGM  430 (432)
T ss_pred             HHHHHHhHHHHHHH-HHHHhCCCcHHHHHHHHHHHHHHHHHH--Hhhhccccc
Confidence            8863 444555544 44555533 344444444444444433  245667764

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=100.00  E-value=1.7e-32  Score=280.73  Aligned_cols=379  Identities=23%  Similarity=0.245  Sum_probs=264.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhcchHHHHHHHHHHHhhhcccccccccccc
Q 011277           87 TLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYV  166 (489)
Q Consensus        87 ~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i  166 (489)
                      .....+..+++++|..+|++++|+++||+|||++++.++++..+++++.++++|++.+++.|+++|++.++...+...++
T Consensus       117 ~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~~~~~~~  196 (521)
T KOG0255|consen  117 STLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLTVGFGLV  196 (521)
T ss_pred             HhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhHHhHhhh
Confidence            34456889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHHHHHhhhccCChHHHHhcCCHHHHHH
Q 011277          167 TEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEA  246 (489)
Q Consensus       167 ~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~i~~~~~~~~~~~~~Esp~~l~~~~~~~~~~~  246 (489)
                      +|+.++++|+.+.++....+..|.++.+..+. +..  + ||+.+++..++.++.++..++.||||||+..+++.+++.+
T Consensus       197 ~E~~~~~~R~~~~~~~~~~~~~~~~~~~~~a~-~~~--~-Wr~~~~~~~~~~~~~~~~~~l~~Es~rwl~~~g~~~~a~~  272 (521)
T KOG0255|consen  197 AEIVSPKQRGLALTLGGFFFVGGLMLPAGAAY-ITR--D-WRWLFWIISIPSGLFLLLWFLPPESPRWLLSKGRIDEAIK  272 (521)
T ss_pred             eeecCcchhhHHHHHHHHHHHHHHHHHHHHHH-HHh--h-HHHHHHHHHHHHHHHHHHHHccCcChHHHHHcCchHHHHH
Confidence            99999999999999944444444444444443 333  3 8999999888888877777777799999999999999988


Q ss_pred             HHHHHhCCC----chhHHHHHH---HhhccCCCCcchhHHHhhhccchhHHHHHHHHHHHHhhhhHHHHHHhH-HHHHHh
Q 011277          247 EFEKLLGGS----HVKSSLAEL---SKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFS-SSVFKS  318 (489)
Q Consensus       247 ~~~~~~~~~----~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  318 (489)
                      .+++..+.+    ...+..++.   .........+...+.++++.+.++.......+.++     .....|+. ......
T Consensus       273 ~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~-----~~~~~y~gl~~~~~~  347 (521)
T KOG0255|consen  273 ILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPKISFLDLFRTPRLRYRTLYLLFIWF-----VFSLVYYGLSLNVSG  347 (521)
T ss_pred             HHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCCCchhhhhcCHHHHHHHHHHHHHHH-----HHhHHHHhhhhhhhh
Confidence            888875432    111111111   11111111122446667766544433332222221     11122222 222233


Q ss_pred             cCCCcchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhc
Q 011277          319 AGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFAL  398 (489)
Q Consensus       319 ~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  398 (489)
                      .+.+........+....++....+...|++|||.....+.....++++........... .....+...+......+   
T Consensus       348 lg~~~~~~~~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---  423 (521)
T KOG0255|consen  348 LGGNIYLNFTLSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLGG-WLHWILPLLGKFFIGSA---  423 (521)
T ss_pred             cCchHHHHHHHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccchh-HHHHHHHHHHHHHHHHH---
Confidence            44455566667777888888889999999999999988888777777666544322110 01222222222222222   


Q ss_pred             CccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHhhcccCCCCCH
Q 011277          399 GAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNVVETKGKSL  478 (489)
Q Consensus       399 ~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~et~~~~~  478 (489)
                       .. +.+.+.+|++|+..|+.+.+.++...++++.++|.+..... .......+.+++....+........+|||+++.+
T Consensus       424 -~~-~~~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~lpet~~~~l  500 (521)
T KOG0255|consen  424 -FN-LIFLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLR-QMFPLLGLILFGWLALLLGLLSLLLLPETKGKPL  500 (521)
T ss_pred             -HH-HHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhcccchHHHHHHHHHHHHHHHHhcCcccCCCCC
Confidence             22 23678999999999999999999999999999997653332 2333344444566666666666678999999999


Q ss_pred             HHH
Q 011277          479 QEI  481 (489)
Q Consensus       479 ~e~  481 (489)
                      +|.
T Consensus       501 ~~t  503 (521)
T KOG0255|consen  501 PGT  503 (521)
T ss_pred             chh
Confidence            774

>PRK09952 shikimate transporter; Provisional

Probab=100.00  E-value=3.4e-32  Score=272.03  Aligned_cols=385  Identities=18%  Similarity=0.151  Sum_probs=240.6

Q ss_pred             HHHHHHHHHHhhhhccceeeccchhh-hhhhc--CCCCchhHHHHHH-----HHHHHHHHHHHHhhHhhhhhchhhHHHH
Q 011277           51 PHVLVATLSSFLFGYHLGVVNEPLES-ISLDL--GFNGNTLAEGLVV-----SMCLGGAFIGSTLSGWIADGVGRRRAFQ  122 (489)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~--~~~~~~~~~~~~~-----s~~~~g~~ig~~~~g~l~Dr~GRr~~~~  122 (489)
                      +......++.+.+.+|...++...|. +.+++  +.+..   .++..     +..+++..+|+++.|+++||+|||+++.
T Consensus        22 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~l~   98 (438)
T PRK09952         22 RAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPA---MGTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRMLM   98 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcH---HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHHHH
Confidence            34566677888999999887776664 44454  44432   24433     3445667799999999999999999999


Q ss_pred             HhHHHHHHHHHHHhhcchHH--------HHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHH
Q 011277          123 LCALPMIIGASISATTRNLI--------GMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSL  194 (489)
Q Consensus       123 ~~~~~~~i~~~l~~~~~~~~--------~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~  194 (489)
                      .+.++++++++++++++|+.        .++++|+++|++.|+.++....+++|++|+++||+..+..+.+..+|..++.
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~  178 (438)
T PRK09952         99 LTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLST  178 (438)
T ss_pred             HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999987        4888999999999999999999999999999999999999999999887776


Q ss_pred             Hhhcccc--------cCCchhHHHHHHHHHHHHHHHHHhhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHh
Q 011277          195 LIGIPVK--------EIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSK  266 (489)
Q Consensus       195 ~~~~~l~--------~~~~~wr~~f~~~~i~~~~~~~~~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (489)
                      .+...+.        +..+ ||++|++..++.++........||+|+|...+++.++.+                     
T Consensus       179 ~~~~~l~~~~~~~~~~~~g-Wr~~f~~~~~~~l~~~~l~~~~~es~~~~~~~~~~~~~~---------------------  236 (438)
T PRK09952        179 GLVSLISMMTTDEQFLSWG-WRIPFLFSIVLVLIALWVRNGMEESAEFEQQQHEQAAAK---------------------  236 (438)
T ss_pred             HHHHHHHHhCCHHHhhccC-hHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHhhccccc---------------------
Confidence            5443322        1234 799999887766655555566889987643221110000                     


Q ss_pred             hccCCCCcchhHHHhhhccchhHHHHHHHHHHHHhhhhHHHHHHhHHHHH-HhcCCCcc---hHHHHHHHHHHHHHHHHH
Q 011277          267 LDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVF-KSAGLSSG---LANVFVGIANLLGSVVAM  342 (489)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~i~~~~g~~~~g  342 (489)
                         .   +....+.+.++++.+.....  ......+. .+....+.+... +..+.+..   ......++..+++.++.|
T Consensus       237 ---~---~~~~~~~l~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g  307 (438)
T PRK09952        237 ---K---RIPVIEALLRHPGAFLKIIA--LRLCELLT-MYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFA  307 (438)
T ss_pred             ---c---cCCHHHHHHHchHHHHHHHH--HHHHHHHH-HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence               0   00001112222222221111  11111111 111222222222 33444433   223344566677888999


Q ss_pred             HHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHH
Q 011277          343 VLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMA  422 (489)
Q Consensus       343 ~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~  422 (489)
                      +++||+|||+.+..+.++..++..........  .. . ....+...++..+..+. ..+..+.+.+|.+|++.|+++.+
T Consensus       308 ~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~--~~-~-~~~~~~~~~l~~~~~~~-~~~~~~~~~~e~~p~~~r~tg~g  382 (438)
T PRK09952        308 WLADRFGRRRVYITGALIGTLSAFPFFMALEA--QS-I-FWIVFFSIMLANIAHDM-VVCVQQPMFTEMFGASYRYSGAG  382 (438)
T ss_pred             HHHHHhCchHHHHHHHHHHHHHHHHHHHHHHc--CC-h-HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCcchhHHHHh
Confidence            99999999998876655444433222221110  11 1 11111112222222221 12345568899999999999999


Q ss_pred             HHHHHHH-HHHHHHHHHHHHHHHHhC--CchhhHHHHHHHHHHHHHHHhhcccCCC
Q 011277          423 VCMSVHW-VINFFVGLLFLRLLEQLG--PQLLYSIFGTFCLMAVAFVKRNVVETKG  475 (489)
Q Consensus       423 ~~~~~~~-~~~~~~~~~~~~l~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~et~~  475 (489)
                      +.+.+++ +++.++|.+...+.+..+  +...+...+.+++++.+.. ...+||++
T Consensus       383 ~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~-~~~~~~~~  437 (438)
T PRK09952        383 VGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTA-LLMKDNQR  437 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHH-HHcccccc
Confidence            9887766 788889998888877543  3445555555555554443 34577653

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=100.00  E-value=6.1e-32  Score=255.03  Aligned_cols=364  Identities=21%  Similarity=0.240  Sum_probs=268.4

Q ss_pred             HHHHHHHHHhhhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHH
Q 011277           52 HVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIG  131 (489)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~  131 (489)
                      .++.+.++.|..+.+.......+|++.+|+|++.+  +.|+..|.|.+++.+++++...++||+.||++++..+.+++++
T Consensus        14 ~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~--~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~   91 (394)
T COG2814          14 ALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEG--AAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVS   91 (394)
T ss_pred             HHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHH
Confidence            45677888899998888889999999999998754  5699999999999999999999999999999999999999999


Q ss_pred             HHHHhhcchHHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHH
Q 011277          132 ASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICF  211 (489)
Q Consensus       132 ~~l~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f  211 (489)
                      ++++++++||+.++++|++.|++.|...+....+..++.|+++|++++++...+..++...|..+|.++.+..| ||..|
T Consensus        92 n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~G-WR~~F  170 (394)
T COG2814          92 NLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFG-WRATF  170 (394)
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhh-HHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999998888 69999


Q ss_pred             HHHHHHHHHHHH-HhhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHH
Q 011277          212 WVSIVPAAILCL-AMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVV  290 (489)
Q Consensus       212 ~~~~i~~~~~~~-~~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (489)
                      +.....+++..+ .+..+|  |+     ++.++                           .+.+..+..+.++++..+..
T Consensus       171 ~~ia~l~ll~~~~~~~~lP--~~-----~~~~~---------------------------~~~~~~~~~~~l~~p~v~~~  216 (394)
T COG2814         171 LAIAVLALLALLLLWKLLP--PS-----EISGS---------------------------LPGPLRTLLRLLRRPGVLLG  216 (394)
T ss_pred             HHHHHHHHHHHHHHHHhCC--Cc-----cCCCC---------------------------CCcchhHHHHHhcCchHHHH
Confidence            986655555444 345566  11     00000                           00011112334555555554


Q ss_pred             HHHHHHHHHHhhhhHHHHH-HhHHHHHHhcCCCc---chHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHH
Q 011277          291 FIGSTLFALQQLSGINAIF-YFSSSVFKSAGLSS---GLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMA  366 (489)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~  366 (489)
                      .....+....+    +..+ |..|...+..+++.   ++..+.++++.++|+.++|++.|| +.|+.+......+.+...
T Consensus       217 l~~t~l~~~g~----F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l  291 (394)
T COG2814         217 LLATFLFMTGH----FALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALL  291 (394)
T ss_pred             HHHHHHHHcch----hhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHH
Confidence            44444433333    3333 33444445566554   467888999999999999999999 777777666555555555


Q ss_pred             HHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccc-cccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011277          367 IQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGP-VPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQ  445 (489)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~  445 (489)
                      .+......       .+..+..+..  .++.....+ ......++.. ++.+..+.++.....+++..++..+.+.++++
T Consensus       292 ~l~~~~~~-------~~~~~~~~~~--wg~a~~~~~~~~~~~~a~~~-p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~  361 (394)
T COG2814         292 ALTFTGAS-------PALALALLFL--WGFAFSPALQGLQTRLARLA-PDAADLAGSLNVAAFNLGIALGAALGGLVLDA  361 (394)
T ss_pred             HHHHhcch-------HHHHHHHHHH--HHHHhhhhhhHHHHHhcccC-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            44332211       1122222222  222222222 1222344533 58899999999999999999999999999999


Q ss_pred             hCCchhhHHHHHHHHHHHHHHH
Q 011277          446 LGPQLLYSIFGTFCLMAVAFVK  467 (489)
Q Consensus       446 ~g~~~~~~~~~~~~~~~~~~~~  467 (489)
                      .|+.....+.+...+++..+..
T Consensus       362 ~g~~~~~~~~a~l~~~a~~~~~  383 (394)
T COG2814         362 LGYAATGWVGAALLLLALLLAL  383 (394)
T ss_pred             hchHHHHHHHHHHHHHHHHHHH
Confidence            8887777777777666665543

>PRK12307 putative sialic acid transporter; Provisional

Probab=100.00  E-value=1.2e-31  Score=268.20  Aligned_cols=390  Identities=18%  Similarity=0.252  Sum_probs=263.6

Q ss_pred             HHHHHHHHHhhhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHH
Q 011277           52 HVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIG  131 (489)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~  131 (489)
                      ....+.++.+.++++.....+.+|.+.+|+|.+.+  +.++..+.+.+++.+++++.|+++||+|||+++..+.++.+++
T Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~--~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~   96 (426)
T PRK12307         19 ALFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDM--EGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVG   96 (426)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence            45666777778888888888899999999998744  5678999999999999999999999999999999999999999


Q ss_pred             HHHHhhcchHHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHH
Q 011277          132 ASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICF  211 (489)
Q Consensus       132 ~~l~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f  211 (489)
                      .++++++++++.++++|+++|++.|...+....++.|++|+++|+++.+++..+..+|..+++.+...+.+..+ ||+.|
T Consensus        97 ~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~-w~~~f  175 (426)
T PRK12307         97 TGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYG-WRAAF  175 (426)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCC-HHHHH
Confidence            99999999999999999999999999999999999999999999999999999999998888877766666566 79999


Q ss_pred             HHHHHHHHHHHHHhhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHH
Q 011277          212 WVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVF  291 (489)
Q Consensus       212 ~~~~i~~~~~~~~~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (489)
                      ++..++.++.+......||++++...+.+.+           .+..          +.........+++.++++.++...
T Consensus       176 ~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~-----------~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~  234 (426)
T PRK12307        176 FVGLLPVLLVIYIRARAPESKEWEEAKLSGK-----------GKHS----------QSAWSVFSLSMKGLFNRAQFPLTL  234 (426)
T ss_pred             HHHHHHHHHHHHHHHHCCCChHHHHhhhhcc-----------cccc----------ccchhhhhHHHHHHHhhchHHHHH
Confidence            8865554444433344577654422110000           0000          000000112345566655555433


Q ss_pred             HHHHHHHHHhhhhHHHHHHhHHHHHHhcCCCc---chHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHH
Q 011277          292 IGSTLFALQQLSGINAIFYFSSSVFKSAGLSS---GLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQ  368 (489)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~  368 (489)
                      ........ .+........+.+..++..+.+.   +.......++.+++.++.+++.||++||+.+..+.....+.....
T Consensus       235 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~  313 (426)
T PRK12307        235 CVFIVLFS-IFGANWPIFGLLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPL  313 (426)
T ss_pred             HHHHHHHH-HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence            32222111 11111122233444445555543   344556678888999999999999999998877665544443322


Q ss_pred             HHHhhccCCCchhhHHHHHHHHHHHHHH-hcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 011277          369 VAASSSYIPGSASLYLSVGGMLMFVLTF-ALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLG  447 (489)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g  447 (489)
                      ....     ......  + ..+.+...+ ..+..+....++.|.+|++.|++++|+...+.++++.++|.+.+.+.+..|
T Consensus       314 ~~~~-----~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g  385 (426)
T PRK12307        314 FRIP-----QDNYLL--L-GACLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITMG  385 (426)
T ss_pred             HHHc-----cccHHH--H-HHHHHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHccc
Confidence            2111     111111  1 112222222 223334444577899999999999999999999999999999888888777


Q ss_pred             Cchh-hHHHHHHHHHHHHHHHhhcccCC
Q 011277          448 PQLL-YSIFGTFCLMAVAFVKRNVVETK  474 (489)
Q Consensus       448 ~~~~-~~~~~~~~~~~~~~~~~~~~et~  474 (489)
                      .... +.+.+..+...........||++
T Consensus       386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  413 (426)
T PRK12307        386 LGAALTFIVAFWTATILLIIGLSIPDRL  413 (426)
T ss_pred             HHHHHHHHHHHHHHHHHhhccccCChhh
Confidence            5432 33333334444444444566653

>PRK03545 putative arabinose transporter; Provisional

Probab=100.00  E-value=6.8e-31  Score=259.37  Aligned_cols=367  Identities=17%  Similarity=0.168  Sum_probs=252.1

Q ss_pred             HHHHHHHHhhhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHH
Q 011277           53 VLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGA  132 (489)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~  132 (489)
                      ...+.++.+....+.....+.+|.+.+|+|.+.+  +.++..+.+.+++.+++++.|+++||+|||+++..+.+++.+++
T Consensus        11 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~--~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~   88 (390)
T PRK03545         11 VVTLALAAFIFNTTEFVPVGLLSDIAQSFHMQTA--QVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASH   88 (390)
T ss_pred             HHHHHHHHHHHHhHHHHHHcchHHHHhHcCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Confidence            3444555555555544555668999999998754  56899999999999999999999999999999999999999999


Q ss_pred             HHHhhcchHHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHH
Q 011277          133 SISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFW  212 (489)
Q Consensus       133 ~l~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~  212 (489)
                      +++++++|++.++++|+++|++.+...+....++.|++|+++|+++.+++..+..+|..+++.++..+.+..+ ||+.|+
T Consensus        89 ~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~g-w~~~f~  167 (390)
T PRK03545         89 VLSALAWNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLG-WRTTFL  167 (390)
T ss_pred             HHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhc-HHHHHH
Confidence            9999999999999999999999988888888999999999999999999999999999999988877766666 699998


Q ss_pred             HHHHHHHHHHHH-hhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHH
Q 011277          213 VSIVPAAILCLA-MVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVF  291 (489)
Q Consensus       213 ~~~i~~~~~~~~-~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (489)
                      +..+..++..+. ....||.|+     +++++                               ....++.++++.++...
T Consensus       168 ~~~~~~~l~~~~~~~~~~~~~~-----~~~~~-------------------------------~~~~~~~~~~~~~~~~~  211 (390)
T PRK03545        168 AIGGGALITLLLLIKLLPLLPS-----EHSGS-------------------------------LKSLPLLFRRPALVSLY  211 (390)
T ss_pred             HHHHHHHHHHHHHHHhCCCCCC-----CCcch-------------------------------HHHHHHHHhCcHHHHHH
Confidence            866555444333 334565431     00000                               00122344455544433


Q ss_pred             HHHHHHHHHhhhhHHHHHHhHHHHHHhcCCC---cchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHH
Q 011277          292 IGSTLFALQQLSGINAIFYFSSSVFKSAGLS---SGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQ  368 (489)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~  368 (489)
                      ...++.....+...   .+..+...+..+.+   .+......+++.+++.++.++++||++||+.. .+.....++....
T Consensus       212 ~~~~~~~~~~~~~~---~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~-~~~~~~~~~~~~l  287 (390)
T PRK03545        212 LLTVVVVTAHFTAY---SYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLL-IAIALLLVCLLLL  287 (390)
T ss_pred             HHHHHHHHHHHHHH---HHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHH-HHHHHHHHHHHHH
Confidence            32222222111111   11122222333443   34555667788999999999999999988654 3333333332222


Q ss_pred             HHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 011277          369 VAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGP  448 (489)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~  448 (489)
                      ....     ..  .+......++++.+. .+.++....+..|..| +.|++++|+.+...+++..+++.+.+.+.+..|.
T Consensus       288 ~~~~-----~~--~~~~~~~~~l~g~~~-~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~  358 (390)
T PRK03545        288 LPAA-----NS--EWHLSVLSIFWGIAI-MCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHLGL  358 (390)
T ss_pred             HHHh-----ch--HHHHHHHHHHHHHHH-hcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCh
Confidence            1111     11  111111222222222 2234444556778877 6889999999999999999999999999999999


Q ss_pred             chhhHHHHHHHHHHHHHHHhhcc
Q 011277          449 QLLYSIFGTFCLMAVAFVKRNVV  471 (489)
Q Consensus       449 ~~~~~~~~~~~~~~~~~~~~~~~  471 (489)
                      ...+.+.+++.+++.++.++..+
T Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~  381 (390)
T PRK03545        359 SSIGYVGAALALAALVWSILIFR  381 (390)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHcc
Confidence            88888888888887776665543

>PRK11663 regulatory protein UhpC; Provisional

Probab=100.00  E-value=1.2e-31  Score=267.96  Aligned_cols=397  Identities=14%  Similarity=0.089  Sum_probs=258.8

Q ss_pred             HHHHHHHhhhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHH
Q 011277           54 LVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGAS  133 (489)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~  133 (489)
                      ....++.+...++...++..+|.+.+++|++.+  +.+++.+.+.+++.+++++.|+++||+|||+++..+.++.+++.+
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~--~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~  103 (434)
T PRK11663         26 ITMYLGYALFYFTRKSFNAAMPEMLADLGLSRS--DIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINI  103 (434)
T ss_pred             HHHHHHHHHHHHhhhhHHHhhHHHHHhcCCCHH--HHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHH
Confidence            344555556666666677888999999998744  568999999999999999999999999999999999999999999


Q ss_pred             HHhhcchHHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHH
Q 011277          134 ISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWV  213 (489)
Q Consensus       134 l~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~  213 (489)
                      +.+.++|++.+++.|++.|++.|...+....++.|++|+++|++++++++.+..+|..+++.++..+.+..+ ||+.|++
T Consensus       104 ~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~g-w~~~f~~  182 (434)
T PRK11663        104 LFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYG-WRYGMMI  182 (434)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-HHHHHHH
Confidence            999999999999999999999998888888999999999999999999999999998888887777666666 7999987


Q ss_pred             HHHHHHHH-HHHhhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHH-HhhhccchhHHH
Q 011277          214 SIVPAAIL-CLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFE-ELLYGRHFRVVF  291 (489)
Q Consensus       214 ~~i~~~~~-~~~~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  291 (489)
                      .++..++. .+..++++|+|++...+...++.++. ++         ..+   +.++.+.+....++ ..++++.++...
T Consensus       183 ~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~-~~---------~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (434)
T PRK11663        183 AGIIAIVVGLFLCWRLRDKPQAMGLPSVGEWRHDA-LE---------LAQ---QQEGAGLSRKEILTKYVLLNPYIWLLS  249 (434)
T ss_pred             HHHHHHHHHHHHHHHcCCCHhhcCCCCcccccccc-cc---------cch---hccccCCChhhhHHHHHhcChHHHHHH
Confidence            65554433 33445678887642111100000000 00         000   00000000000011 123333333322


Q ss_pred             HHHHHHHHHhhhhHHHHHHhHHHHH-HhcCCCc---chHHHHHHHHHHHHHHHHHHHhhhc--CCchhH-HHhhHHHHHH
Q 011277          292 IGSTLFALQQLSGINAIFYFSSSVF-KSAGLSS---GLANVFVGIANLLGSVVAMVLMDKL--GRKALL-QWSFFSMAVS  364 (489)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~i~~~~g~~~~g~l~dr~--grr~~~-~~~~~~~~i~  364 (489)
                      .......    ........+.+.++ +..+.+.   +.......++..++.++.|+++||+  ++|+.. ........+.
T Consensus       250 ~~~~~~~----~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~  325 (434)
T PRK11663        250 FSYVLVY----VVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLS  325 (434)
T ss_pred             HHHHHHH----HHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHH
Confidence            2211111    11122233444444 3345543   4455667788899999999999998  333322 2222222222


Q ss_pred             HHHHHHHhhccCCCchhhHHHHHHHHHHHHHH-hcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 011277          365 MAIQVAASSSYIPGSASLYLSVGGMLMFVLTF-ALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLL  443 (489)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~  443 (489)
                      ........    .... ... ..  +.+..++ ..+.......+..|.+|++.|++++|+.+..+++++.++|.+.+.+.
T Consensus       326 ~~~~~~~~----~~~~-~~~-~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~  397 (434)
T PRK11663        326 VGSLWLMP----FASY-VMQ-AA--CFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVL  397 (434)
T ss_pred             HHHHHHcc----cccH-HHH-HH--HHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHH
Confidence            21111111    1111 111 11  1111111 11222223346789999999999999999999999999999999999


Q ss_pred             HHhCCchhhHHHHHHHHHHHHHHHhhcccCCCCCH
Q 011277          444 EQLGPQLLYSIFGTFCLMAVAFVKRNVVETKGKSL  478 (489)
Q Consensus       444 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~et~~~~~  478 (489)
                      +..|+...|.+.+.++++..+..+...+++++++-
T Consensus       398 ~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~  432 (434)
T PRK11663        398 EIWHWTGFFVVISIAAGISALLLLPFLNAQAPREA  432 (434)
T ss_pred             HhcccHHHHHHHHHHHHHHHHHHHHHHhhhchhcc
Confidence            98998888888888888877766666777666643

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=100.00  E-value=2.1e-31  Score=264.22  Aligned_cols=385  Identities=15%  Similarity=0.123  Sum_probs=249.2

Q ss_pred             HHHHHHHHHhhhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHH
Q 011277           52 HVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIG  131 (489)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~  131 (489)
                      ....+++..+++.+|-...+...|.+.+|+|.+.+  +.++..+.+.+++.+++++.|+++||+|||+++..++++++++
T Consensus         9 ~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~--~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~   86 (412)
T TIGR02332         9 LIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSAT--MFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIA   86 (412)
T ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHH--HHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHH
Confidence            44555666667788888888888999999988744  5689999999999999999999999999999999999999999


Q ss_pred             HHHHhhcchHHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhccccc------CCc
Q 011277          132 ASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKE------IAG  205 (489)
Q Consensus       132 ~~l~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~------~~~  205 (489)
                      +.++++++|++.+++.|+++|++.|...+....++.|++|+++|++++++++.+..+|..++++++..+.+      ..+
T Consensus        87 ~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~g  166 (412)
T TIGR02332        87 STATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMALKG  166 (412)
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccc
Confidence            99999999999999999999999999988888899999999999999999999999998888888765532      235


Q ss_pred             hhHHHHHHHHHHHHHH-HHHhhhccCChHHHHhcCCHHHHHHHHHH-HhCCCchhHHHHHHHhhccCCCCc-chhHHHhh
Q 011277          206 WWRICFWVSIVPAAIL-CLAMVFCAESPHWLYKKGRTAEAEAEFEK-LLGGSHVKSSLAELSKLDRGDDGD-IVKFEELL  282 (489)
Q Consensus       206 ~wr~~f~~~~i~~~~~-~~~~~~~~Esp~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  282 (489)
                       ||+.|++.+++.++. .+..+++||+|+..  +.-.++.++..++ ..+....   .++.++..+.++.. ...+++++
T Consensus       167 -wr~~f~~~~~~~l~~~~~~~~~~~~~p~~~--~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~  240 (412)
T TIGR02332       167 -WQWLFLLEGFPSVILGVMTWFWLDDSPDKA--KWLDEEDKKALKEMIDNDQLT---LEQPEGAFAHAAMPQRSMLREIF  240 (412)
T ss_pred             -hhHHHHHHHHHHHHHHHHHhhccCCCcccC--CCCCHHHHHHHHHHHHhcccc---ccccccccccccccHHHHHHHhc
Confidence             799999876666544 34456779998420  1001111111111 1000000   00000000000000 11122222


Q ss_pred             hccchhHHHHHHHHHHHHhhhhHHHHHHhHHHHHHhc--CCC---cchHHHHHHHHHHHHHHHHHHHhhhcCCchhH-HH
Q 011277          283 YGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSA--GLS---SGLANVFVGIANLLGSVVAMVLMDKLGRKALL-QW  356 (489)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~---~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~-~~  356 (489)
                       ++.++...   ..+.+ .......+..+.|.++++.  +.+   .+.......++..+|.++.|+++||++||+.. ..
T Consensus       241 -~~~~~~~~---~~~~~-~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~  315 (412)
T TIGR02332       241 -TPAIMLYT---LAYFC-LTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTAL  315 (412)
T ss_pred             -ChHHHHHH---HHHHH-HHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHH
Confidence             23322221   12221 1222333445666666553  222   34556677788999999999999999977743 33


Q ss_pred             hhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHH
Q 011277          357 SFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVG  436 (489)
Q Consensus       357 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~  436 (489)
                      ......++..+ . ..   ... ...  .......+..+.. ...+.......|.+|++.|+++.|+.+..++++++++|
T Consensus       316 ~~~~~~~~~~~-~-~~---~~~-~~~--~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p  386 (412)
T TIGR02332       316 PYLFAAAGWLL-A-SA---TDH-NLI--QLLGIIMASMGSF-SAMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSP  386 (412)
T ss_pred             HHHHHHHHHHH-H-Hh---cCC-HHH--HHHHHHHHHHHhh-hhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhh
Confidence            33333322211 1 11   111 111  1111111111111 12233445567889999999999999999999999999


Q ss_pred             HHHHHHHHHhC-CchhhHHHHHH
Q 011277          437 LLFLRLLEQLG-PQLLYSIFGTF  458 (489)
Q Consensus       437 ~~~~~l~~~~g-~~~~~~~~~~~  458 (489)
                      .+.+.+.+..| +...+.+.+++
T Consensus       387 ~~~g~i~~~~g~~~~~~~~~~~~  409 (412)
T TIGR02332       387 FLIGILKDATGSFNSGLWFVAAL  409 (412)
T ss_pred             hhcccccccCCCCchhHHHHHHH
Confidence            98888877765 66666555443

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK15075 citrate-proton symporter; Provisional

Probab=100.00  E-value=2.8e-30  Score=258.33  Aligned_cols=387  Identities=20%  Similarity=0.278  Sum_probs=240.0

Q ss_pred             HHHHHHHHHhhhhccceeeccchhhhhhhcCCCCchhHHHHHHHHH-----HHHHHHHHHhhHhhhhhchhhHHHHHhHH
Q 011277           52 HVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMC-----LGGAFIGSTLSGWIADGVGRRRAFQLCAL  126 (489)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~-----~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~  126 (489)
                      .....+++.+++.+|...++...|.+.+|++.+..+.. .+..+..     .++..+|+++.|+++||+|||++++.+.+
T Consensus        16 ~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~   94 (434)
T PRK15075         16 AILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFA-SLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVTLS   94 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchH-HHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHHHH
Confidence            35667888999999999999999999999988755432 2333222     22234789999999999999999999999


Q ss_pred             HHHHHHHHHhhcchHHH--------HHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhc
Q 011277          127 PMIIGASISATTRNLIG--------MLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGI  198 (489)
Q Consensus       127 ~~~i~~~l~~~~~~~~~--------l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~  198 (489)
                      ++++++++++++++++.        ++++|+++|++.|...+....+++|++|+++|+++++++.....+|...++.++.
T Consensus        95 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~g~  174 (434)
T PRK15075         95 IMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALLGY  174 (434)
T ss_pred             HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999874        6889999999999998888899999999999999999988887777766666655


Q ss_pred             ccc--------cCCchhHHHHHHHHHHHHHHHHHhhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccC
Q 011277          199 PVK--------EIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRG  270 (489)
Q Consensus       199 ~l~--------~~~~~wr~~f~~~~i~~~~~~~~~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (489)
                      .+.        +..+ ||++|++..+...+..+.....||++++...+++              .               
T Consensus       175 ~l~~~~~~~~~~~~g-Wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~--------------~---------------  224 (434)
T PRK15075        175 LLNQWLSPAQMAEWG-WRIPFLIGCLIVPFIFLIRRSLEETEEFLARKHR--------------P---------------  224 (434)
T ss_pred             HHHHhCCHHHHhccc-hHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhhhc--------------c---------------
Confidence            431        2345 7999987644433332223334454322110000              0               


Q ss_pred             CCCcchhHHHhhhccchhHHHHHHHHHHHHhhhhHHHHHHhHHHHHHh-cCCCc---chHHHHHHHHHHHHHHHHHHHhh
Q 011277          271 DDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKS-AGLSS---GLANVFVGIANLLGSVVAMVLMD  346 (489)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~i~~~~g~~~~g~l~d  346 (489)
                        .....+++..++  .+........... .....+...+|.+.++++ .+.+.   ++......++.+++.++.|+++|
T Consensus       225 --~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~D  299 (434)
T PRK15075        225 --SMREIFRSLAAN--WRIVLAGMLMVAM-TTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSD  299 (434)
T ss_pred             --ccccHHHHHHHh--HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              000001111111  1111111111111 222233444555655544 45543   34556677888899999999999


Q ss_pred             hcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHH
Q 011277          347 KLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMS  426 (489)
Q Consensus       347 r~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~  426 (489)
                      |+|||+.+..+.....+...........  .......  .....+....++. ..+....+..|.+|++.|+++.++...
T Consensus       300 r~g~r~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~~~~~~~g~-~~~~~~~~~~e~~p~~~rg~~~g~~~~  374 (434)
T PRK15075        300 RIGRRPVLIAFTVLAILTAYPALSWLVA--APSFARM--LAVELWLSFLYGS-YNGAMVVALTEVMPAEVRTAGFSLAYS  374 (434)
T ss_pred             HhcchHHHHHHHHHHHHHHHHHHHHHHc--CCchHHH--HHHHHHHHHHHHH-HHhhHHHHHHHHCCCCccchheeHHHH
Confidence            9999998766544332221111111111  1111111  1111111222221 223344578999999999999999877


Q ss_pred             HHHH-HHHHHHHHHHHHHHHhCCch---hhHHHHHHHHHHHHHHHhhcccCCCCCHHHHH
Q 011277          427 VHWV-INFFVGLLFLRLLEQLGPQL---LYSIFGTFCLMAVAFVKRNVVETKGKSLQEIE  482 (489)
Q Consensus       427 ~~~~-~~~~~~~~~~~l~~~~g~~~---~~~~~~~~~~~~~~~~~~~~~et~~~~~~e~~  482 (489)
                      +++. ++.++|.+.+.+.+..|..+   .+.+.+.++.....   ...++-+|..++..|
T Consensus       375 ~~~~~~g~~~p~~~g~i~~~~g~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~  431 (434)
T PRK15075        375 LATAIFGGFTPAISTWLIHVTGDKAAPGYWLSFAAVCGLIAT---LVLYRRRGARLQAAE  431 (434)
T ss_pred             HHHHHHhhhHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHH---HHhccccchhhhhhh
Confidence            7776 47788888888888877532   23333333333322   345566666666554

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=100.00  E-value=7.5e-31  Score=255.04  Aligned_cols=348  Identities=14%  Similarity=0.083  Sum_probs=228.3

Q ss_pred             eeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhcchHHHHHHHH
Q 011277           69 VVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGR  148 (489)
Q Consensus        69 ~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l~~~R  148 (489)
                      .+++.+|.+.+|+|++.  .+.|++.+.+.+|+.+++++.|+++||+|||+++..+......+.......+|++.+++.|
T Consensus         9 ~~~~~lp~i~~~~~~s~--~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R   86 (368)
T TIGR00903         9 TFSPVLSLVAEDIDVSK--EELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWLLACQ   86 (368)
T ss_pred             HHHhhHHHHHHHhCcCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence            35678899999999864  4568999999999999999999999999999987766655555443333447999999999


Q ss_pred             HHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHH-HHHHHHhhh
Q 011277          149 FVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPA-AILCLAMVF  227 (489)
Q Consensus       149 ~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~i~~-~~~~~~~~~  227 (489)
                      +++|++.+. .......++|++|+++|+++.++...+..+|..++++++..+.+..+ ||+.|++.+++. +...+..++
T Consensus        87 ~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~g-Wr~~f~~~~~l~~~~~~~~~~~  164 (368)
T TIGR00903        87 LLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGG-LQLLIIPIAAVAAAGIILVLAA  164 (368)
T ss_pred             HHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-hHHHHHHHHHHHHHHHHHHHHH
Confidence            999999986 44555667999999999999999999999999999999888877667 699998854444 344455667


Q ss_pred             ccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHHHHHHHHHHHhhhhHHH
Q 011277          228 CAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINA  307 (489)
Q Consensus       228 ~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (489)
                      +||+|++.   ++..+.+             +.              ..+++++++++.++.......+...    ..+.
T Consensus       165 lp~~p~~~---~~~~~~~-------------~~--------------~~~~~~ll~~~~~~~~~~~~~~~~~----~~~~  210 (368)
T TIGR00903       165 LPALPFQA---AEGFGFK-------------DA--------------VKEFGALAGRKDLWIIGAILGFGVA----LFDN  210 (368)
T ss_pred             cCCCCCCC---CCCcchH-------------HH--------------HHHHHHHHcChhHHHHHHHHHHHHH----HHHH
Confidence            89988641   1100000             00              0124456666665554433333222    2233


Q ss_pred             HHHhHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHhhhcCCc---hhHHH-hhHHHHHHHHHHHHHhhccCCCchhhH
Q 011277          308 IFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRK---ALLQW-SFFSMAVSMAIQVAASSSYIPGSASLY  383 (489)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr---~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~  383 (489)
                      +..|.+.++++.+.+.. ......+..+.+.+..++++||..||   +.... .....++...+.  ...   .+..   
T Consensus       211 ~~~wlp~~L~~~g~s~~-~~~~~~l~~~~g~~g~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~--~~~---~~~~---  281 (368)
T TIGR00903       211 LAIWLEAALRPAGLEDI-AGDAVALAILAGLIGVAVIPDRVARAGLRSIYIRAAALLIAAFFLAL--AFE---LNRL---  281 (368)
T ss_pred             HHHHHHHHHHHCCCChH-HHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHH--HHc---cccH---
Confidence            44566666666555432 23334455556666678889988654   22221 222222222111  111   1111   


Q ss_pred             HHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHH
Q 011277          384 LSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAV  463 (489)
Q Consensus       384 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~  463 (489)
                      ..+....+.. .+..+..+..+.+.+|++|++.|+++.|+.+..+++++..+|...+.+..  +....|.+++++.+++.
T Consensus       282 ~~~~~~~l~~-~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~--~~~~~f~~~~~~~~i~~  358 (368)
T TIGR00903       282 ALFAFIGIAG-LLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS--SAEAYFTFLAILITIAF  358 (368)
T ss_pred             HHHHHHHHHH-HhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHH
Confidence            1111111111 12222334466789999999999999999999999999999988776653  55566777777777766


Q ss_pred             HHH
Q 011277          464 AFV  466 (489)
Q Consensus       464 ~~~  466 (489)
                      +.+
T Consensus       359 ~~~  361 (368)
T TIGR00903       359 AIA  361 (368)
T ss_pred             HHH
Confidence            654

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=100.00  E-value=3.2e-30  Score=254.36  Aligned_cols=374  Identities=13%  Similarity=0.084  Sum_probs=249.0

Q ss_pred             HHHHHHHHHhhhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHH
Q 011277           52 HVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIG  131 (489)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~  131 (489)
                      ....++++.++.... ...++.+|.+.+|+|++.+  +.++..+.+.+++.+++++.|+++||+|||+++..+..+++++
T Consensus        11 ~~~~~~~~~~~~~~~-~~~~~~lp~i~~~~~~s~~--~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~   87 (393)
T PRK09705         11 LLVLVLIGLNMRPLL-TSVGPLLPQLRQASGMSFS--VAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVG   87 (393)
T ss_pred             HHHHHHHHHHcchhh-hccchhHHHHHHHhCCCHH--HHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHH
Confidence            334444444443333 4577899999999998754  5689999999999999999999999999999999999999999


Q ss_pred             HHHHhhcchHHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHH
Q 011277          132 ASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICF  211 (489)
Q Consensus       132 ~~l~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f  211 (489)
                      .+++++++|++.++++|+++|++.|...+....++.|++| ++|+++++.+..+..+|..+++.++..+.++...||+.+
T Consensus        88 ~~~~~~a~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~  166 (393)
T PRK09705         88 ALMRELYPQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTL  166 (393)
T ss_pred             HHHHHHCcchHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence            9999999999999999999999999988888899999987 789999999999888888888887766655542268776


Q ss_pred             HHHHHHHHHHHHHhhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHH
Q 011277          212 WVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVF  291 (489)
Q Consensus       212 ~~~~i~~~~~~~~~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (489)
                      ....+..++..+..+...+        +++++.+                       +.+.    +..+.+++++.+...
T Consensus       167 ~~~~~~~~~~~~~~~~~~~--------~~~~~~~-----------------------~~~~----~~~~~l~~~~~~~l~  211 (393)
T PRK09705        167 AWWALPAVVALFAWWWQSA--------REVASSH-----------------------KTTT----TPVRVVFTPRAWTLG  211 (393)
T ss_pred             HHHHHHHHHHHHHHHHHhc--------CCCcccc-----------------------CCCc----CCcccccCHhHHHHH
Confidence            5443333333222221111        0000000                       0000    001122223333222


Q ss_pred             HHHHHHHHHhhhhHHHHHHhHHHHHHhcCCC---cchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHH
Q 011277          292 IGSTLFALQQLSGINAIFYFSSSVFKSAGLS---SGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQ  368 (489)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~  368 (489)
                      ....+.   .. .......+.+..+.+.+.+   .+.......++.++|.++.+++.||++||+....+..+..++..+.
T Consensus       212 ~~~~~~---~~-~~~~~~~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~  287 (393)
T PRK09705        212 VYFGLI---NG-GYASLIAWLPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGF  287 (393)
T ss_pred             HHHHHH---HH-HHHHHHHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHH
Confidence            211111   11 1222333444444444544   3556677889999999999999999999988877765555544433


Q ss_pred             HHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccC-CchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 011277          369 VAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIF-PSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLG  447 (489)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g  447 (489)
                      ....     ... ....   ..+...+.+ +..|.......+.+ |++.|++..++.+.++++++.++|.+.+.+.|..|
T Consensus       288 ~~~~-----~~~-~~~~---~~l~g~g~g-~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g  357 (393)
T PRK09705        288 IWLP-----LQL-PVLW---AMVCGLGLG-GAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISG  357 (393)
T ss_pred             HHcc-----chH-HHHH---HHHHHHhcc-chHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            2111     111 1111   111122221 12233333445555 56889999999999999999999999999999887


Q ss_pred             C-chhhHHHHHHHHHHHHHHHhhcccCCCCCH
Q 011277          448 P-QLLYSIFGTFCLMAVAFVKRNVVETKGKSL  478 (489)
Q Consensus       448 ~-~~~~~~~~~~~~~~~~~~~~~~~et~~~~~  478 (489)
                      . ...+.+.+.+++...+......|||++|.+
T Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (393)
T PRK09705        358 NYLMDWAFHALCVVGLMIITLRFAPARFPQLW  389 (393)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHhccccccchh
Confidence            4 456666666666666666778999988754

>TIGR00891 2A0112 putative sialic acid transporter

Probab=100.00  E-value=1.3e-30  Score=258.74  Aligned_cols=380  Identities=20%  Similarity=0.227  Sum_probs=251.4

Q ss_pred             HHHHHHHHHHhhhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHH
Q 011277           51 PHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMII  130 (489)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i  130 (489)
                      +....+.++.+.++++....++..|.+.+++|.+.+  +.++..+.+.++..+++++.|+++||+|||+++..+.++.++
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~--~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~   89 (405)
T TIGR00891        12 NAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTV--DAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSA   89 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChh--hHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            345667778888899988889999999999998754  568999999999999999999999999999999999999999


Q ss_pred             HHHHHhhcchHHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCc-hhHH
Q 011277          131 GASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAG-WWRI  209 (489)
Q Consensus       131 ~~~l~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~-~wr~  209 (489)
                      ++++++++++++.+++.|+++|++.+...+....++.|++|+++|+++.++...+..+|..+++.++..+.+..+ .||+
T Consensus        90 ~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~  169 (405)
T TIGR00891        90 GTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRA  169 (405)
T ss_pred             HHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHH
Confidence            999999999999999999999999999999999999999999999999999999999998888887766554333 2799


Q ss_pred             HHHHHHHHHHHHHHHhhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhH
Q 011277          210 CFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRV  289 (489)
Q Consensus       210 ~f~~~~i~~~~~~~~~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (489)
                      .|++..++.++..+.....||++++...+++.++..+..++..+.++....  ..       .......++.. .+....
T Consensus       170 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-------~~~~~~~~~~~-~~~~~~  239 (405)
T TIGR00891       170 LFFISILPIIFALWLRKNIPEAEDWKEKHAGKALVRTMVDILYGGEHRIAN--IV-------MTLAAAMVQSA-GKRWPT  239 (405)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCChhHHHHhhhhhhhhhHHHHHhccchhhhh--hh-------hhhhHHhhhhh-hhhhHH
Confidence            998876666665556667899876543222211111111111111000000  00       00000011100 011111


Q ss_pred             HHHHHHHHHHHhhhhHHHHHHhHHHHH-HhcCCC---cchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHH
Q 011277          290 VFIGSTLFALQQLSGINAIFYFSSSVF-KSAGLS---SGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSM  365 (489)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~  365 (489)
                      .........+.... ......+.+..+ +..+.+   .+.......++.+++.++.+++.||+|||+.+..+.....+..
T Consensus       240 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~  318 (405)
T TIGR00891       240 FVYLVVLVLFANLY-SHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLI  318 (405)
T ss_pred             HHHHHHHHHHHHHH-HhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHH
Confidence            11111111111111 111112222222 334444   3445566778889999999999999999998776655433222


Q ss_pred             HHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011277          366 AIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQ  445 (489)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~  445 (489)
                      ......     ....  +.......+.. ....+..+....+..|.+|++.|+++.|+.+.+.++++.++|.+.+.+.+.
T Consensus       319 ~~~~~~-----~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~  390 (405)
T TIGR00891       319 IPVFAI-----GANV--AVLGLGLFFQQ-MLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQR  390 (405)
T ss_pred             HHHHHh-----CCch--HHHHHHHHHHH-HHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            221111     1111  11111111111 122233445556789999999999999999999999999999999999888


Q ss_pred             hC-Cchh
Q 011277          446 LG-PQLL  451 (489)
Q Consensus       446 ~g-~~~~  451 (489)
                      .| +...
T Consensus       391 ~g~~~~~  397 (405)
T TIGR00891       391 LDEYGTA  397 (405)
T ss_pred             ccccchh
Confidence            87 4443

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=100.00  E-value=4.9e-30  Score=254.84  Aligned_cols=371  Identities=21%  Similarity=0.258  Sum_probs=253.1

Q ss_pred             HHHHHHHHHHHhhhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHH
Q 011277           50 FPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMI  129 (489)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~  129 (489)
                      +....++....++++++....+...|.+.+|+|.+.  .+.++..+.+.++..+++++.|+++||+|||+++..+.++..
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~   91 (406)
T PRK11551         14 ALTIGLCFLVALLEGLDLQSAGVAAPRMAQEFGLDV--AQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFG   91 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHH
Confidence            345566677888889998888989999999998864  456899999999999999999999999999999999999999


Q ss_pred             HHHHHHhhcchHHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHH
Q 011277          130 IGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRI  209 (489)
Q Consensus       130 i~~~l~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~  209 (489)
                      ++.++++++++++.+++.|+++|++.+...+....++.|++|+++|+++.+++..+..+|..+++.++..+.+..+ ||+
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~  170 (406)
T PRK11551         92 LFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAA-WRH  170 (406)
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccC-HHH
Confidence            9999999999999999999999999999888889999999999999999999999999998888888766666556 699


Q ss_pred             HHHHHHHHHHH-HHHHhhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhc---c
Q 011277          210 CFWVSIVPAAI-LCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYG---R  285 (489)
Q Consensus       210 ~f~~~~i~~~~-~~~~~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~  285 (489)
                      .|++..+..++ ..+...++||+|++...+.+.++.++.                              .+..++.   +
T Consensus       171 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~------------------------------~~~~~~~~~~~  220 (406)
T PRK11551        171 IFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQRAPV------------------------------LRALFGEGRAT  220 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCChhHHhccCcchhhhhh------------------------------HHHHhhhhhhh
Confidence            88875444333 333455679987653221111100000                              0000100   1


Q ss_pred             chhHHHHHHHHHHHHhhhhHHHHHHhHHHHHHhcCCC---cchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHH
Q 011277          286 HFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLS---SGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMA  362 (489)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~  362 (489)
                      ............    .........+.+...+..+.+   .+.......++..++.++.|++.||+|||+.+........
T Consensus       221 ~~~~~~~~~~~~----~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~  296 (406)
T PRK11551        221 ATLLLWISYFFT----LIVLYFLLNWLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGIL  296 (406)
T ss_pred             HHHHHHHHHHHH----HHHHHHHHHHHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            111111111111    111122223444455555544   3556666778899999999999999999998776554444


Q ss_pred             HHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 011277          363 VSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRL  442 (489)
Q Consensus       363 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l  442 (489)
                      ++.......     .. ... .. ...+..... ..+..+....+..|.+|++.|+++.|+.+.+.++++.++|.+.+.+
T Consensus       297 ~~~~~~~~~-----~~-~~~-~~-~~~~~~g~~-~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l  367 (406)
T PRK11551        297 ASLAALAAA-----PS-FAG-ML-LAGFAAGLF-VVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQL  367 (406)
T ss_pred             HHHHHHHhc-----Cc-HHH-HH-HHHHHHHHH-HHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhh
Confidence            433322211     11 111 11 111111111 1223445566889999999999999999999999999999998888


Q ss_pred             HHHhCCc-hhhHHHHHHHHHHHHHH
Q 011277          443 LEQLGPQ-LLYSIFGTFCLMAVAFV  466 (489)
Q Consensus       443 ~~~~g~~-~~~~~~~~~~~~~~~~~  466 (489)
                      .+..+.. ..+.....+.+++.+..
T Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~  392 (406)
T PRK11551        368 LALGRSTVGVIGASIPVILVAALAA  392 (406)
T ss_pred             hccCCchHHHHHHHHHHHHHHHHHH
Confidence            7764432 33333443444443333

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=100.00  E-value=2.6e-31  Score=268.20  Aligned_cols=387  Identities=15%  Similarity=0.122  Sum_probs=240.2

Q ss_pred             HHHHHHhhhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHH
Q 011277           55 VATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASI  134 (489)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l  134 (489)
                      .+.++.++...+-..++...|.+.+|+|++.+  +.|++.+.+.+++.+++++.|+++||+|||+++..+.++++++.++
T Consensus        33 ~~~~~~~~~y~~r~~~~~~~~~i~~~~~~s~~--~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~  110 (467)
T PRK09556         33 VVFIGYLTMYLIRKNFKAAQNDMISTYGLSTT--ELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAICMLG  110 (467)
T ss_pred             HHHHHHHHHHHHhcChhhhhHHHHHhcCCCHH--HHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHHHHHH
Confidence            33444444444666778889999999998744  5689999999999999999999999999999998888887777665


Q ss_pred             Hhh-----cchHHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccC--Cchh
Q 011277          135 SAT-----TRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEI--AGWW  207 (489)
Q Consensus       135 ~~~-----~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~--~~~w  207 (489)
                      .+.     ++|++.+++.|+++|++.|...+....+++|++|+++||++++++..+..+|..+++++...+...  .++|
T Consensus       111 ~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~  190 (467)
T PRK09556        111 FGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHV  190 (467)
T ss_pred             HHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhhccCcc
Confidence            554     689999999999999999998888889999999999999999999999999988777765443322  2347


Q ss_pred             HHHHHHHHHHHHHHHH-HhhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhH-HHhhhcc
Q 011277          208 RICFWVSIVPAAILCL-AMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKF-EELLYGR  285 (489)
Q Consensus       208 r~~f~~~~i~~~~~~~-~~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  285 (489)
                      |..|.+.++..++..+ ..++.+++|+..   +..++ ++..+    . ....  ++ +..++.+......+ +..++++
T Consensus       191 ~~~f~~~g~~~~~~~i~~~~~~~~~p~~~---~~~~~-~~~~~----~-~~~~--~~-~~~~~~~~~~~~~~~~~~l~~~  258 (467)
T PRK09556        191 IGMFIFPSIIALIIGFIGLRYGSDSPEEL---GWGKA-EEIFG----E-PISE--ED-KETESTDMTKWQIFVEYVLKNP  258 (467)
T ss_pred             hhHHHHHHHHHHHHHHHHHHhCCCChhhc---CCCCh-hhccc----C-ccch--hh-hccccccCcHHHHHHHHHHcCh
Confidence            8888765554444433 344456665421   11111 00000    0 0000  00 00000000000111 1244555


Q ss_pred             chhHHHHHHHHHHHHhhhhHHHHHHhHHHHH-HhcCCCc---chHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHH
Q 011277          286 HFRVVFIGSTLFALQQLSGINAIFYFSSSVF-KSAGLSS---GLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSM  361 (489)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~  361 (489)
                      .++......++...    .......+.+..+ +..+.+.   +.......++..++.+++|+++||++||+.........
T Consensus       259 ~~~~~~~~~~~~~~----~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~  334 (467)
T PRK09556        259 VIWLLCFANIFLYI----VRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALA  334 (467)
T ss_pred             HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHH
Confidence            54443332222111    1122334444444 3355543   34555667888999999999999999988765543333


Q ss_pred             HHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHH-HHHHHHHHHH
Q 011277          362 AVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWV-INFFVGLLFL  440 (489)
Q Consensus       362 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~-~~~~~~~~~~  440 (489)
                      .+.........    ....  .......+.++.. ..+..........|.+|++.|+++.|+.+..+++ ++.++|.+.+
T Consensus       335 ~~~~~~~~~~~----~~~~--~~~~~~~~~~G~~-~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G  407 (467)
T PRK09556        335 LIIFTLGVYQH----ATSE--YMYLASLFALGFL-VFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLG  407 (467)
T ss_pred             HHHHHHHHHHh----cCcH--HHHHHHHHHHHHH-HhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHH
Confidence            32221111111    1111  1111111111111 1111112224567999999999999999999997 6688999988


Q ss_pred             HHHH------------HhCCchhhHHHHHHHHHHHHHH
Q 011277          441 RLLE------------QLGPQLLYSIFGTFCLMAVAFV  466 (489)
Q Consensus       441 ~l~~------------~~g~~~~~~~~~~~~~~~~~~~  466 (489)
                      .+.+            ..++...|.+++++++++.+..
T Consensus       408 ~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~  445 (467)
T PRK09556        408 MIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLM  445 (467)
T ss_pred             HHhcccccccccccccccChHHHHHHHHHHHHHHHHHH
Confidence            8888            4567777777766666654433

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.98  E-value=8.2e-30  Score=258.76  Aligned_cols=378  Identities=13%  Similarity=0.061  Sum_probs=249.8

Q ss_pred             HHHHHHHHHHhhhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHH
Q 011277           51 PHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMII  130 (489)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i  130 (489)
                      ..+..++++.++...|.++++.++|.+.+|+|.+.++  .+|..+.|.+++.++.+++|+++||+|||+++..+.+++.+
T Consensus         6 ~~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~--~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~   83 (495)
T PRK14995          6 LTLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNE--LLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGL   83 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhH--HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            3567778889999999999999999999999987554  57899999999999999999999999999999999999999


Q ss_pred             HHHHHhhcchHHHHHHHHHHHhhhcccccccccccccccC-CcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHH
Q 011277          131 GASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVS-PPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRI  209 (489)
Q Consensus       131 ~~~l~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~-~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~  209 (489)
                      ++++++.++|++.++++|+++|+|.+...+.....+.+.+ |+++|+++.+++.....+|..+||.+++.+.+..+ |||
T Consensus        84 ~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~g-wr~  162 (495)
T PRK14995         84 ASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFY-WGS  162 (495)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC-hHH
Confidence            9999999999999999999999999988777766676665 78999999999999999999999999998888777 699


Q ss_pred             HHHHHHHHHHHHH-HHhhhccCChHHHHhcCCHHHHHHH------------HHHHhCCC-chhHHH----------HHHH
Q 011277          210 CFWVSIVPAAILC-LAMVFCAESPHWLYKKGRTAEAEAE------------FEKLLGGS-HVKSSL----------AELS  265 (489)
Q Consensus       210 ~f~~~~i~~~~~~-~~~~~~~Esp~~l~~~~~~~~~~~~------------~~~~~~~~-~~~~~~----------~~~~  265 (489)
                      .|++.....++.. +..+++||+|+.  .+++.+.....            ++...+.. ......          ....
T Consensus       163 ~f~i~~~~~~~~~~l~~~~l~~~~~~--~~~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~  240 (495)
T PRK14995        163 VFLINVPIVLVVMGLTARYVPRQAGR--RDQPLNLGHALMLIVAILLLVYSAKTALKGFLSLWVTSLTLLTGALLLGLFI  240 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCCCC--CCCCCChHhHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHH
Confidence            9998754444433 344556776531  11111111000            00000000 000000          0000


Q ss_pred             hhccCCCCcchhHHHhhhccchhHHHHHHHHHHHHhhhhHHHHHHhHHHHHH-hcCC---CcchHHHHHHHHHHHHHHHH
Q 011277          266 KLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFK-SAGL---SSGLANVFVGIANLLGSVVA  341 (489)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~i~~~~g~~~~  341 (489)
                      ..+...+ ++..-.++++++.+.......+.....    .....++.+..++ ..+.   ..+....+..++..++.++.
T Consensus       241 ~~e~~~~-~p~~~~~lf~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~  315 (495)
T PRK14995        241 RTQLAAS-RPMIDMRLFTHRIILSGVVMAMTAMIT----LVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIA  315 (495)
T ss_pred             HHHhcCC-CCCcCHHHhCCcccHHHHHHHHHHHHH----HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            0011111 111113456666555443332222221    1122223333322 2343   35677788889999999999


Q ss_pred             HHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHH
Q 011277          342 MVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAM  421 (489)
Q Consensus       342 g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~  421 (489)
                      |++.||+|+|+.+..+.....++...+....  . ....  +......++.+++.+... +.......+..|++.++.+.
T Consensus       316 g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~--~-~~~~--~~~~~~~~l~G~g~g~~~-~~~~~~~~~~~~~~~~g~~~  389 (495)
T PRK14995        316 GILVSRLGLRLVATGGMALSALSFYGLAMTD--F-STQQ--WQAWGLMALLGFSAASAL-LASTSAIMAAAPPEKAAAAG  389 (495)
T ss_pred             HHHHHHcCchHHHHHHHHHHHHHHHHHHHhc--C-CCch--HHHHHHHHHHHHhHHHHH-HHHHHHHHhcCCHHhcchHH
Confidence            9999999999988777666655554433221  1 1111  111112223333333222 22333556778999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 011277          422 AVCMSVHWVINFFVGLLFLRLLE  444 (489)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~~~l~~  444 (489)
                      ++.+....+++.+++.+.+.+++
T Consensus       390 ~~~~~~~~lG~~~G~ai~g~i~~  412 (495)
T PRK14995        390 AIETMAYELGAGLGIAIFGLLLS  412 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999998888876655543

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.97  E-value=2.1e-30  Score=256.16  Aligned_cols=380  Identities=17%  Similarity=0.163  Sum_probs=249.3

Q ss_pred             ccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhcchHHHH
Q 011277           65 YHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGM  144 (489)
Q Consensus        65 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l  144 (489)
                      ++...++...|.+.+++|.+.+  +.+++.+.+.++..++.++.|+++||+|||+++..+.++++++..++++++|++.+
T Consensus         8 ~~~~~~~~~~~~~~~~~g~s~~--~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (399)
T TIGR00893         8 LDRANLSFAAPMLQEDLGLSAA--QYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYVSL   85 (399)
T ss_pred             HHHHhhhHhHHHHHHhhCCChh--hHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcCHHHH
Confidence            3445566778889999988644  56899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHHHHH
Q 011277          145 LLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLA  224 (489)
Q Consensus       145 ~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~i~~~~~~~~  224 (489)
                      +++|+++|++.+...+....++.|++|+++|++..++......+|..+++.++..+.+..+ ||+.|++.++..++..+.
T Consensus        86 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~  164 (399)
T TIGR00893        86 YILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFS-WQWAFIIEGVLGIIWGVL  164 (399)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCC-chHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999888876666666 699998765555544333


Q ss_pred             -hhhccCChHHHHhcCCHHHHHH-HHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHHHHHHHHHHHhh
Q 011277          225 -MVFCAESPHWLYKKGRTAEAEA-EFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQL  302 (489)
Q Consensus       225 -~~~~~Esp~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (489)
                       .+..||+|+.  .+...++.++ ..++...         +. +.++.++......++.+++++++.......+..... 
T Consensus       165 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~---------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  231 (399)
T TIGR00893       165 WLKFIPDPPQK--AKWLTEEEKYIVVGGLLA---------EQ-QGKGPSTPKKYQIKELLKDRRVWGLALGQFLVNIGL-  231 (399)
T ss_pred             hhheecCCCCc--cccCCHHHHhhcchhhcc---------cc-ccccccCCCccchHHHhcCHHHHHHHHHHHHHHhHH-
Confidence             3446666531  0111111110 0000000         00 001111112233455666555544443333222211 


Q ss_pred             hhHHHHHHhHHHHH-HhcCC---CcchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHH-hhHHHHHHHHHHHHHhhccCC
Q 011277          303 SGINAIFYFSSSVF-KSAGL---SSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQW-SFFSMAVSMAIQVAASSSYIP  377 (489)
Q Consensus       303 ~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~-~~~~~~i~~~~~~~~~~~~~~  377 (489)
                         .....+.+..+ +..+.   ..+.......++.+++.++.++++||++||+.... ......++........... .
T Consensus       232 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  307 (399)
T TIGR00893       232 ---GFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFAT-N  307 (399)
T ss_pred             ---HHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHh-c
Confidence               12222223222 22333   34566677778889999999999999999862111 1111111111111000000 0


Q ss_pred             CchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CchhhHHHH
Q 011277          378 GSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLG-PQLLYSIFG  456 (489)
Q Consensus       378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g-~~~~~~~~~  456 (489)
                      .....+..+.  ......+..+..|....+..|.+|++.|+++.|+.+.+.++++.++|.+.+.+.+..| +...+.+.+
T Consensus       308 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~  385 (399)
T TIGR00893       308 YVNIPYAALA--LVALGFFGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVA  385 (399)
T ss_pred             cchhHHHHHH--HHHHHHhchhhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHH
Confidence            0111111111  1111222333567777899999999999999999999999999999999988888877 777777777


Q ss_pred             HHHHHHHHHH
Q 011277          457 TFCLMAVAFV  466 (489)
Q Consensus       457 ~~~~~~~~~~  466 (489)
                      .+++++.+..
T Consensus       386 ~~~~~~~~~~  395 (399)
T TIGR00893       386 ALALIGALSY  395 (399)
T ss_pred             HHHHHHHHHH
Confidence            7766665543

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.97  E-value=4.7e-29  Score=254.39  Aligned_cols=397  Identities=18%  Similarity=0.235  Sum_probs=254.1

Q ss_pred             HHHHHHHHHhhhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHH
Q 011277           52 HVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIG  131 (489)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~  131 (489)
                      ....+.++.++++++....++.+|.+.+++|.+.+  +.++..+.+.+++.+++++.|+++||+|||+++..+.++.+++
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~--~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~   98 (496)
T PRK03893         21 AFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTV--QAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVG   98 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence            45566777788888888888889999999988744  4578899999999999999999999999999999999999999


Q ss_pred             HHHHhhcchHHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHH
Q 011277          132 ASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICF  211 (489)
Q Consensus       132 ~~l~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f  211 (489)
                      .++.++++|++.+++.|++.|++.+...+....++.|.+|+++|++..+++..+..+|..+++.++..+.+..+ ||+.|
T Consensus        99 ~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-w~~~f  177 (496)
T PRK03893         99 TLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWG-WRALF  177 (496)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-HHHHH
Confidence            99999999999999999999999999888888999999999999999999999999999989888877766666 69999


Q ss_pred             HHHHHHHHHHHHHhhhccCChHHHHhcCCHHHHHHHHHHHhCCCc-hhHHH-H-----HH-HhhccCCCCcchh------
Q 011277          212 WVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSH-VKSSL-A-----EL-SKLDRGDDGDIVK------  277 (489)
Q Consensus       212 ~~~~i~~~~~~~~~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~-~-----~~-~~~~~~~~~~~~~------  277 (489)
                      ++..++.++.++.....||++++...+++.++.++..+.....+. ..... .     .. .............      
T Consensus       178 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (496)
T PRK03893        178 FIGILPIIFALWLRKNLPEAEDWKEKHAGKAPVRTMVDILYRGEHRIINILLTLAAAAALWFCFAGNLQNAAIVAVLGLL  257 (496)
T ss_pred             HHHHHHHHHHHHHHHhCCCchhhhhhccccccchhHHHHHhcchhHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHH
Confidence            876555555545556678887653322111111111111100000 00000 0     00 0000000000000      


Q ss_pred             -------HHHhhhccchhHHHHHHHHHHHHhhhhHHHHHHhHHHHHH-hcCCC---cchHHHHHHHHHHHHHHHHHHHhh
Q 011277          278 -------FEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFK-SAGLS---SGLANVFVGIANLLGSVVAMVLMD  346 (489)
Q Consensus       278 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~i~~~~g~~~~g~l~d  346 (489)
                             +......++.+ .........+..+........+.+..++ ..+.+   .+.......++..++.++.|+++|
T Consensus       258 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~d  336 (496)
T PRK03893        258 CAAIFISFMVQSSGKRWP-TGVMLMVVVLFAFLYSWPIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGD  336 (496)
T ss_pred             HHHHHHHHHHHhcccchh-HHHHHHHHHHHHHhccchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                   00000000000 0000000000000000112223344442 44544   345666777888999999999999


Q ss_pred             hcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHH
Q 011277          347 KLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMS  426 (489)
Q Consensus       347 r~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~  426 (489)
                      |+|||+.+..+..+..+..+.....     ... ..+.. ...+........+..+....+..|.+|++.|++++++.+.
T Consensus       337 r~g~~~~~~~~~~~~~~~~~~~~~~-----~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  409 (496)
T PRK03893        337 WLGTRKAYVCSLLISQLLIIPVFAI-----GGA-NVWVL-GLLLFFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYN  409 (496)
T ss_pred             HhcchHHHHHHHHHHHHHHHHHhhc-----ccc-HHHHH-HHHHHHHHHHhcccchhhHHHHHhhCCHHHhhcccchhhh
Confidence            9999998776654444333222111     111 11111 1111111122333444555678899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHH
Q 011277          427 VHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFC  459 (489)
Q Consensus       427 ~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~  459 (489)
                      ...+++.++|.+.+.+.+..|+...+.+.+.++
T Consensus       410 ~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~~~  442 (496)
T PRK03893        410 VGALGGALAPILGALIAQRLDLGTALASLSFSL  442 (496)
T ss_pred             hhhHHHHHHHHHHHHHhccCChHHHHHHHHHHH
Confidence            999999999999888888888776665544433

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.97  E-value=4.8e-30  Score=238.60  Aligned_cols=379  Identities=16%  Similarity=0.155  Sum_probs=252.3

Q ss_pred             eeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhcchHHHHHHH
Q 011277           68 GVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLG  147 (489)
Q Consensus        68 ~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l~~~  147 (489)
                      ..++.+.|.+.+|.++|  ..|.|++.+.+.+.|+++.++.|.++||.+.|..+..++++.++.+++.+++++...+.+.
T Consensus        46 knF~~a~p~l~e~~~ls--k~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai~nil~Gfs~s~~~~~~l  123 (448)
T COG2271          46 KNFNLAMPALIEDGGLS--KTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILFGFSPSLFLFAVL  123 (448)
T ss_pred             HhHhhccHHHHHhcCCC--HHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence            34677889999998876  4567999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhh--cccccCCchhHHHHHHHHHHHHHHHHH-
Q 011277          148 RFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIG--IPVKEIAGWWRICFWVSIVPAAILCLA-  224 (489)
Q Consensus       148 R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~--~~l~~~~~~wr~~f~~~~i~~~~~~~~-  224 (489)
                      -+++|+..|...|.+...++.|+|++|||+..++.+.+.++|..+.+++.  ..+..+. +||..|++.++.++++.++ 
T Consensus       124 ~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~-~w~~~f~~pgiiaiival~~  202 (448)
T COG2271         124 WVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHG-GWRAAFYFPGIIAIIVALIL  202 (448)
T ss_pred             HHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999966655555  4444443 4899999876666655444 


Q ss_pred             hhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCC-C-CcchhHHHhhhccchhHHHHHHHHHHHHhh
Q 011277          225 MVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGD-D-GDIVKFEELLYGRHFRVVFIGSTLFALQQL  302 (489)
Q Consensus       225 ~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (489)
                      .+..+++|+-.   +-++     .++..++..     +...+.++.+ . ..+.-.+.+++++..+.+.++.+.....-+
T Consensus       203 ~~~~rd~Pqs~---GLP~-----ie~~~~d~~-----e~~~~~~~~~~ls~~~i~~~YVL~Nk~iW~la~a~vfvYivR~  269 (448)
T COG2271         203 LFLLRDRPQSE---GLPP-----IEEYRGDPL-----EIYEEEKENEGLTAWQIFVKYVLKNKLIWLLALANVFVYVVRY  269 (448)
T ss_pred             HHHhCCCcccc---CCCC-----HHHhhcCch-----hhhhhhccCCCccHHHHHHHHHHcChHHHHHHHHHHHHHHHHH
Confidence            45566666421   1110     111111100     0000111111 1 112233445666666665554444333222


Q ss_pred             hhHHHHHHhHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHhhhc--CCchhHHHhhHHHHHHHHHHHHHhhccCCCch
Q 011277          303 SGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKL--GRKALLQWSFFSMAVSMAIQVAASSSYIPGSA  380 (489)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~--grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  380 (489)
                      ......+.|..+..+.+..+++.....+=++.++|++++|+++||+  |||......+.+....++......    +.. 
T Consensus       270 gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w~~----~~~-  344 (448)
T COG2271         270 GINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLVLYWLA----PNG-  344 (448)
T ss_pred             HHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHcC----CCc-
Confidence            2222333333333233333355666777789999999999999996  677665444333333222222111    111 


Q ss_pred             hhHHHHHHHHHHHHHH-hcCccccccccccccCCchhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCchhhHHHHHH
Q 011277          381 SLYLSVGGMLMFVLTF-ALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWV-INFFVGLLFLRLLEQLGPQLLYSIFGTF  458 (489)
Q Consensus       381 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~g~~~~~~~~~~~  458 (489)
                      ..++..  .+++.+++ ..|.--+......|..|++..|++.|+...++++ |+..+....+.+.|..||...|.++.+.
T Consensus       345 ~~~l~~--~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~  422 (448)
T COG2271         345 SYLLDA--ILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIA  422 (448)
T ss_pred             cHHHHH--HHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHH
Confidence            111111  12222222 2222223445678999999999999999999999 7777777777776778998888888777


Q ss_pred             HHHHHHHHHhh
Q 011277          459 CLMAVAFVKRN  469 (489)
Q Consensus       459 ~~~~~~~~~~~  469 (489)
                      ++++.+++...
T Consensus       423 a~l~~lll~~~  433 (448)
T COG2271         423 ALLAILLLLPV  433 (448)
T ss_pred             HHHHHHHHHHH
Confidence            76666554433

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.97  E-value=1.6e-28  Score=246.84  Aligned_cols=382  Identities=13%  Similarity=0.123  Sum_probs=232.4

Q ss_pred             eccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhc----chHHHHH
Q 011277           70 VNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATT----RNLIGML  145 (489)
Q Consensus        70 ~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~----~~~~~l~  145 (489)
                      +...+|.+.++ |++.  .+.++..+.+.+++.+++++.|+++||+|||+++..+.++++++.++++++    .+++.++
T Consensus        48 ~~~~~p~l~~~-g~s~--~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~  124 (452)
T PRK11273         48 FALAMPYLVEQ-GFSR--GDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMF  124 (452)
T ss_pred             HHHhhHHHHHc-CCCH--HHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcccccHHHHH
Confidence            45567777777 7764  456899999999999999999999999999999999999999999888775    3788889


Q ss_pred             HHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHH-HHHHHhhcccccCCchhHHHHHHHHHHHHH-HHH
Q 011277          146 LGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGL-MGSLLIGIPVKEIAGWWRICFWVSIVPAAI-LCL  223 (489)
Q Consensus       146 ~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~-~~g~~~~~~l~~~~~~wr~~f~~~~i~~~~-~~~  223 (489)
                      +.|++.|++.|...+.....+.|++|+++|++++++++.+..+|. +.+++.+.......+ ||+.|++.++..++ ..+
T Consensus       125 ~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~g-w~~~f~i~~~~~~~~~~l  203 (452)
T PRK11273        125 VLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFND-WHAALYMPAFAAILVALF  203 (452)
T ss_pred             HHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHH
Confidence            999999999998887777788999999999999999988888874 556654332222234 79999886554444 344


Q ss_pred             HhhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhH-HHhhhccchhHHHHHHHHHHHHhh
Q 011277          224 AMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKF-EELLYGRHFRVVFIGSTLFALQQL  302 (489)
Q Consensus       224 ~~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  302 (489)
                      ..+++||+|+....+ +.++.+++.   .+         +.+..++.+......+ ...++++.++.......+..... 
T Consensus       204 ~~~~~~~~~~~~~~~-~~~~~~~~~---~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-  269 (452)
T PRK11273        204 AFAMMRDTPQSCGLP-PIEEYKNDY---PD---------DYNEKHEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLR-  269 (452)
T ss_pred             HHHHccCCHhhcCCC-Chhhhhhcc---cc---------ccccccCCCccHHHHHHHHHHcChHHHHHHHHHHHHHHHH-
Confidence            556678887532111 111100000   00         0000000000000111 12344454444433332222211 


Q ss_pred             hhHHHHHHhHHHHHHh-cCCC---cchHHHHHHHHHHHHHHHHHHHhhhc--CCchhHHHh-hHHHHHHHHHHHHHhhcc
Q 011277          303 SGINAIFYFSSSVFKS-AGLS---SGLANVFVGIANLLGSVVAMVLMDKL--GRKALLQWS-FFSMAVSMAIQVAASSSY  375 (489)
Q Consensus       303 ~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~i~~~~g~~~~g~l~dr~--grr~~~~~~-~~~~~i~~~~~~~~~~~~  375 (489)
                         +....+.|..+++ .+++   .+.......++.+++.+++|+++||+  +||...... .....++........   
T Consensus       270 ---~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~---  343 (452)
T PRK11273        270 ---YGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNP---  343 (452)
T ss_pred             ---HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhc---
Confidence               2222344444443 3443   34455566788888999999999999  445432221 111122211111110   


Q ss_pred             CCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCchhhHH
Q 011277          376 IPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFF-VGLLFLRLLEQLGPQLLYSI  454 (489)
Q Consensus       376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~g~~~~~~~  454 (489)
                       ....  ......++..... ..+..+....+..|.+|++.|+++.|+.+...++++.+ +|.+.+.+.|..|+...|.+
T Consensus       344 -~~~~--~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~  419 (452)
T PRK11273        344 -AGNP--TVDMACMIVIGFL-IYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMV  419 (452)
T ss_pred             -ccCh--HHHHHHHHHHHHH-HHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHH
Confidence             1111  1111111111111 11111223345679999999999999999999888765 68888888999998888888


Q ss_pred             HHHHHHHHHHHHH-hhcccCCCCCHHHH
Q 011277          455 FGTFCLMAVAFVK-RNVVETKGKSLQEI  481 (489)
Q Consensus       455 ~~~~~~~~~~~~~-~~~~et~~~~~~e~  481 (489)
                      ++++++++.+... ...+|+|  ..||.
T Consensus       420 ~~~~~~~~~~~~~~~~~~~~~--~~~~~  445 (452)
T PRK11273        420 MIGGSILAVILLIVVMIGEKR--HHEEL  445 (452)
T ss_pred             HHHHHHHHHHHHHHHhccccc--hHHHH
Confidence            8877776665443 3344444  34454

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.97  E-value=3.2e-28  Score=241.24  Aligned_cols=372  Identities=18%  Similarity=0.201  Sum_probs=244.6

Q ss_pred             HHHHHHHHhhhhccceeeccchhh-hhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHH
Q 011277           53 VLVATLSSFLFGYHLGVVNEPLES-ISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIG  131 (489)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~  131 (489)
                      ...+++..++...+.++..+.+|. +.+++|.+.  .+.+++.+.+.+++.+++++.|+++||+|||+++..+.++++++
T Consensus        17 ~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~--~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~   94 (399)
T PRK05122         17 IVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSA--FLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALS   94 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccH--HHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHH
Confidence            455666677777777788888886 567888764  45689999999999999999999999999999999999988887


Q ss_pred             HHHHhhc--------chHHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccC
Q 011277          132 ASISATT--------RNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEI  203 (489)
Q Consensus       132 ~~l~~~~--------~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~  203 (489)
                      ++.++.+        .++..+++.|+++|++.+...+....++.|++|+++|+++.++++.+..+|..+++.++..+.+.
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~  174 (399)
T PRK05122         95 GLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHW  174 (399)
T ss_pred             HHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHc
Confidence            7765543        25667899999999999998888888899999999999999999999999988888888777666


Q ss_pred             CchhHHHHHHHHHHHHHHHHHhhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhh
Q 011277          204 AGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLY  283 (489)
Q Consensus       204 ~~~wr~~f~~~~i~~~~~~~~~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (489)
                      .+ ||+.+++..+..++..+.....||++.     .+ ++ +                              .+.++.++
T Consensus       175 ~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-~~-~------------------------------~~~~~~~~  216 (399)
T PRK05122        175 GG-LAGLGLLIMLLALLGLLLARPRPAVPP-----VK-GE-R------------------------------LPFRRVLG  216 (399)
T ss_pred             cc-HHHHHHHHHHHHHHHHHHHhcCCCCCC-----CC-cc-c------------------------------hhHHHHHH
Confidence            67 688887654443333222222233210     00 00 0                              00011111


Q ss_pred             ccchhHHHHHHHHHHHHhhhhHHHHHHhHHHHHHhcCC-CcchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHH
Q 011277          284 GRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGL-SSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMA  362 (489)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~  362 (489)
                       + .+.......+..+.    ......+.+..+.+.+. ..+.......++..++.++.+++.||+++|+.+..+.....
T Consensus       217 -~-~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~  290 (399)
T PRK05122        217 -R-VWPYGMGLALASIG----FGTIATFITLYYAARGWDGAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEI  290 (399)
T ss_pred             -H-HHHHHHHHHHHHHH----HHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence             0 00000000111111    11111122222233332 23455556677888899999999999999998777666555


Q ss_pred             HHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 011277          363 VSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRL  442 (489)
Q Consensus       363 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l  442 (489)
                      ++........     + .  +..+...++.+++++. ..|.......|..|++.|+++.++.+...+++..+++.+.+.+
T Consensus       291 ~~~~~~~~~~-----~-~--~~~~~~~~l~G~~~~~-~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l  361 (399)
T PRK05122        291 LGLLLLWLAP-----S-P--WMALIGAALTGFGFSL-VFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLV  361 (399)
T ss_pred             HHHHHHHHhc-----c-H--HHHHHHHHHHHHhHHH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5544332211     1 1  1111222223333221 2233334566888999999999999999999988888888888


Q ss_pred             HHHhCCchhhHHHHHHHHHHHHHHHhhcccCCCCCHHH
Q 011277          443 LEQLGPQLLYSIFGTFCLMAVAFVKRNVVETKGKSLQE  480 (489)
Q Consensus       443 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~et~~~~~~e  480 (489)
                      .+..|+...+.+.+.+++++.+... ..++.++++.+|
T Consensus       362 ~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  398 (399)
T PRK05122        362 ASWFGYPSIFLAAALAALLGLALTW-LLYRRAPRAVPE  398 (399)
T ss_pred             HHHcCHHHHHHHHHHHHHHHHHHHH-HhcccccccCCC
Confidence            8888888888887777776665543 455555555444

>PRK10504 putative transporter; Provisional

Probab=99.97  E-value=2e-28  Score=248.04  Aligned_cols=383  Identities=16%  Similarity=0.155  Sum_probs=250.6

Q ss_pred             HHHHHHHHhhhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHH
Q 011277           53 VLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGA  132 (489)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~  132 (489)
                      ...++++.++..++.+.+++.+|.+.+|+|.+..  +.++..+.+.++..++.+++|+++||+|||+++..+.++++++.
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~--~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~   89 (471)
T PRK10504         12 LWIVAFGFFMQSLDTTIVNTALPSMAQSLGESPL--HMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGS   89 (471)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHH
Confidence            4556667788888888888999999999988644  45788899999999999999999999999999999999999999


Q ss_pred             HHHhhcchHHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHH
Q 011277          133 SISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFW  212 (489)
Q Consensus       133 ~l~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~  212 (489)
                      ++++++++++.++++|+++|++.|...+....++.|++|+++|++..+++.....+|..+++.+++.+.+..+ ||+.|+
T Consensus        90 ~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~g-w~~~f~  168 (471)
T PRK10504         90 LFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYAS-WHWIFL  168 (471)
T ss_pred             HHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcc-HHHHHH
Confidence            9999999999999999999999999988889999999999999999999999999999999998887777667 699998


Q ss_pred             HHHHHHHHHHHH-hhhccCChHHHHhcCCHHHHHHHHH---------HHhCCCc---hhHHHH-----------HHHhhc
Q 011277          213 VSIVPAAILCLA-MVFCAESPHWLYKKGRTAEAEAEFE---------KLLGGSH---VKSSLA-----------ELSKLD  268 (489)
Q Consensus       213 ~~~i~~~~~~~~-~~~~~Esp~~l~~~~~~~~~~~~~~---------~~~~~~~---~~~~~~-----------~~~~~~  268 (489)
                      +......+..+. ....|+++.   .+.|.+.......         ...+.+.   ......           .....+
T Consensus       169 ~~~~~~~l~~~~~~~~~~~~~~---~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (471)
T PRK10504        169 INIPVGIIGAIATLMLMPNYTM---QTRRFDLSGFLLLAVGMATLTLALDGSKGLGLSPLAIAGLVAVGVVALLLYLLHA  245 (471)
T ss_pred             HHHHHHHHHHHHHHHhCCCccc---cCCCCChHHHHHHHHHHHHHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence            865444433333 333454321   1112221110000         0000000   000000           000001


Q ss_pred             cCCCCcchhHHHhhhccchhHHHHHHHHHHHHhhhhHHHHHHhHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHhhhc
Q 011277          269 RGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKL  348 (489)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~  348 (489)
                      +.+..+..+. +++++++++......++............++|....++......++...+..++.+++.++.+++.||+
T Consensus       246 ~~~~~~~~~~-~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~  324 (471)
T PRK10504        246 RNNNRALFSL-KLFRTRTFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRF  324 (471)
T ss_pred             hcCCCCccCH-HHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            1111112222 467777777665544443332222122233333322222222345566667777778888999999999


Q ss_pred             CCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHH
Q 011277          349 GRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVH  428 (489)
Q Consensus       349 grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~  428 (489)
                      |||+++..+.....+...+.....    ......... ....+.+.+.+.... .......+..|++.|+++.++.+...
T Consensus       325 g~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~-~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~  398 (471)
T PRK10504        325 GYRRVLVATTLGLALVSLLFMLVA----LLGWYYLLP-FVLFLQGMVNSTRFS-SMNTLTLKDLPDNLASSGNSLLSMIM  398 (471)
T ss_pred             CchHHHHHHHHHHHHHHHHHHhcc----ccccHHHHH-HHHHHHHHHHHHHHH-HHHHHHHHcCCHHhccchHHHHHHHH
Confidence            999998877766665544433211    111111111 111222222222222 23346678889999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhCC
Q 011277          429 WVINFFVGLLFLRLLEQLGP  448 (489)
Q Consensus       429 ~~~~~~~~~~~~~l~~~~g~  448 (489)
                      .++..+++.+.+.+++..++
T Consensus       399 ~~g~~ig~~i~g~ll~~~g~  418 (471)
T PRK10504        399 QLSMSIGVTIAGLLLGLFGQ  418 (471)
T ss_pred             HHHHHHHHHHHHHHHHHhhh
Confidence            99999999888777765543

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.97  E-value=5.9e-29  Score=244.27  Aligned_cols=349  Identities=21%  Similarity=0.189  Sum_probs=234.7

Q ss_pred             eeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhcchHHHHHHHH
Q 011277           69 VVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGR  148 (489)
Q Consensus        69 ~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l~~~R  148 (489)
                      ..++..|.+.+|+|.+.  .+.++..+.+.+++.+++++.|+++||+|||+++..+.++.+++.+++++++|++.++++|
T Consensus        21 ~~~~~~~~~~~~~~~s~--~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (377)
T TIGR00890        21 TWTLLAPPLGRYFGVGV--TAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAALYLTY   98 (377)
T ss_pred             hhhhHHHHHHHHhCCCH--HHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35667899999998864  4568999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHH-HHHhhcccccCCchhHHHHHHHHHHHHHHHHHh-h
Q 011277          149 FVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMG-SLLIGIPVKEIAGWWRICFWVSIVPAAILCLAM-V  226 (489)
Q Consensus       149 ~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~-g~~~~~~l~~~~~~wr~~f~~~~i~~~~~~~~~-~  226 (489)
                      +++|++.|..++....++.|++| ++|+++.++...+..+|..+ +++.+. +.+..+ ||+.|++..+..++..+.. +
T Consensus        99 ~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~-~~~~f~~~~~~~~~~~~~~~~  175 (377)
T TIGR00890        99 GLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITS-VINLEG-VPAAFIYMGIIFLLVIVLGAF  175 (377)
T ss_pred             HHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHH-HHhccc-HHHHHHHHHHHHHHHHHHHHH
Confidence            99999999887777777888887 57999999999998888654 444443 333345 7999988666555544433 3


Q ss_pred             hccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHHHHHHHHHHHhhhhHH
Q 011277          227 FCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGIN  306 (489)
Q Consensus       227 ~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (489)
                      +.+|.|+.   +.++++            ..              ..+....++.++++.++.............   . 
T Consensus       176 ~~~~~~~~---~~~~~~------------~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-  222 (377)
T TIGR00890       176 LIGYPPGQ---LIKTNI------------EV--------------SVKDYTVWEMLRTPQFWVLYLSFFLNAVSG---L-  222 (377)
T ss_pred             heecCchh---ccccCc------------cc--------------chhhhhHHHHHcCccHHHHHHHHHHHhHHH---H-
Confidence            44443320   000000            00              000012234445555544333222221111   1 


Q ss_pred             HHHHhHHHHHHhcCCCc---chHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhH
Q 011277          307 AIFYFSSSVFKSAGLSS---GLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLY  383 (489)
Q Consensus       307 ~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  383 (489)
                      ....+.+...++.+.+.   +.......++..++.++.+++.||+|||+.+..+.....++........     ... ..
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~-----~~~-~~  296 (377)
T TIGR00890       223 LLIGLYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIP-----MLN-DV  296 (377)
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcc-----cch-hH
Confidence            11111222233344432   3455667788889999999999999999988777666665554433221     111 11


Q ss_pred             HHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHH
Q 011277          384 LSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMA  462 (489)
Q Consensus       384 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~  462 (489)
                      .......+.....+ +..+....+..|.+|+++|++..|+.+....+++.++|.+.+.+.+..|+...|.+.+++++++
T Consensus       297 ~~~~~~~~~g~~~g-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~  374 (377)
T TIGR00890       297 LFLATVALVFFTWG-GTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTS  374 (377)
T ss_pred             HHHHHHHHHHHHhc-cchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHh
Confidence            11111122222222 1223444578899999999999999999999999999999888888888888887777666654

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.97  E-value=5.9e-29  Score=247.78  Aligned_cols=377  Identities=17%  Similarity=0.103  Sum_probs=256.6

Q ss_pred             hhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhh----
Q 011277           62 LFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISAT----  137 (489)
Q Consensus        62 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~----  137 (489)
                      +...........+|.+.++++.+  +.+.|++.+.+.+++.+++++.|+++||+|||+++..+.++.+++..+.+.    
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~s--~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~  105 (417)
T PRK10489         28 ISIFGLGLLGVAVPVQIQMMTGS--TLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFL  105 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCC--HHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHc
Confidence            33344455667788888887754  556799999999999999999999999999999999888877776655432    


Q ss_pred             -cchHHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHH
Q 011277          138 -TRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIV  216 (489)
Q Consensus       138 -~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~i  216 (489)
                       .++++.+++.|+++|++.+...+....++.|+.|+++|+++.++......+|..+|+.++..+.+..+ ||+.|++..+
T Consensus       106 ~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~-~~~~~~~~~~  184 (417)
T PRK10489        106 PEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGG-VAWNYGLAAA  184 (417)
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHh-hHHHHHHHHH
Confidence             56788899999999999888777778889999999999999999999999999999998877665555 6888887666


Q ss_pred             HHHHHHHHhhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHHHHHHH
Q 011277          217 PAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTL  296 (489)
Q Consensus       217 ~~~~~~~~~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (489)
                      ..++..+....+||+++.   +.+.++..                ++.          ...++..++++.++.......+
T Consensus       185 ~~~~~~~~~~~l~~~~~~---~~~~~~~~----------------~~~----------~~~~~~~~~~~~~~~~~~~~~~  235 (417)
T PRK10489        185 GTFITLLPLLRLPALPPP---PQPREHPL----------------RSL----------LAGFRFLLASPVVGGIALLGGL  235 (417)
T ss_pred             HHHHHHHHHHhCCCCCCC---Ccccccch----------------HHH----------HHHHHHHHcChHHHHHHHHHHH
Confidence            555555555666775421   00000000                000          0012223334444333322222


Q ss_pred             HHHHhhhhHHHHHHhHHHHHHh-cCCC---cchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHh
Q 011277          297 FALQQLSGINAIFYFSSSVFKS-AGLS---SGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAAS  372 (489)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~  372 (489)
                      ...  .   .....+.+...++ .+.+   .+......+++.+++.++.+++.||.++++.+..+.....++.++.... 
T Consensus       236 ~~~--~---~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~-  309 (417)
T PRK10489        236 LTM--A---SAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLM-  309 (417)
T ss_pred             HHH--H---HhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHcc-
Confidence            111  1   1112222333333 3443   3455666778889999999999999777777666655554443332211 


Q ss_pred             hccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhh
Q 011277          373 SSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLY  452 (489)
Q Consensus       373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~  452 (489)
                          + .  .+......++++.+.+. ..+....+..|..|++.|+++.|+.+...+++..+++.+.+.+.+..|....+
T Consensus       310 ----~-~--~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~  381 (417)
T PRK10489        310 ----P-M--WILAVLCLALFGYLSAI-SSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASA  381 (417)
T ss_pred             ----c-h--HHHHHHHHHHHHHHHHH-HHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHH
Confidence                1 1  11111222222222211 12344567889999999999999999999999999999999999988887777


Q ss_pred             HHHHHHHHHHHHHHHhhcccCCCCCHHHHHHh
Q 011277          453 SIFGTFCLMAVAFVKRNVVETKGKSLQEIEIA  484 (489)
Q Consensus       453 ~~~~~~~~~~~~~~~~~~~et~~~~~~e~~~~  484 (489)
                      .+.+.+.++..+.....+||+|+++++|+|+-
T Consensus       382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  413 (417)
T PRK10489        382 SASGFGLLIIGVLLLLVLGELRRFRQTPPEVD  413 (417)
T ss_pred             HHHHHHHHHHHHHHHHhcccccccccccccCC
Confidence            77777777766666778899999999999854

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.97  E-value=8.1e-29  Score=252.02  Aligned_cols=377  Identities=19%  Similarity=0.205  Sum_probs=251.9

Q ss_pred             HHHHHHHHhhhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHH
Q 011277           53 VLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGA  132 (489)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~  132 (489)
                      ...++++.++..++.++.++.+|.+.+|+|.+.+  +.++..+.+.++..++.++.|+++||+|||+++..+.+++.+++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~--~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~   81 (485)
T TIGR00711         4 TIVLMLGTFMAVLDSTIVNVAIPTIAGDLGSSLS--QVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGS   81 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChh--hhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence            4556777888889999999999999999998754  45799999999999999999999999999999999999999999


Q ss_pred             HHHhhcchHHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHH
Q 011277          133 SISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFW  212 (489)
Q Consensus       133 ~l~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~  212 (489)
                      ++++.++|++.++++|+++|++.+...+....++.|++|+++|+++.+++.....+|..+++.++..+.+..+ ||+.|+
T Consensus        82 ~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~-w~~~f~  160 (485)
T TIGR00711        82 LLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYH-WRWIFL  160 (485)
T ss_pred             HHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcC-ceehhh
Confidence            9999999999999999999999999999999999999999999999999999999999999999888877777 699998


Q ss_pred             HHHHHHHHHHH-HhhhccCChHHHHhcCCHHHHHHHH----------HHHhCC-Cch--h-HHHH----------HHHhh
Q 011277          213 VSIVPAAILCL-AMVFCAESPHWLYKKGRTAEAEAEF----------EKLLGG-SHV--K-SSLA----------ELSKL  267 (489)
Q Consensus       213 ~~~i~~~~~~~-~~~~~~Esp~~l~~~~~~~~~~~~~----------~~~~~~-~~~--~-~~~~----------~~~~~  267 (489)
                      +..+..++..+ ..++.||+++-  .+++.+.....+          ....+. +..  . ....          .....
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (485)
T TIGR00711       161 INVPIGIIVVVVAFFILPRDKPA--ASENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNEILILSITGLVAIIAFVVW  238 (485)
T ss_pred             hhhHHHHHHHHHHHHHcCCcccc--ccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHHHHHH
Confidence            86555544433 34456665321  111111110000          000000 000  0 0000          00000


Q ss_pred             ccCCCCcchhHHHhhhccchhHHHHHHHHHHHHhhhhHHHHHHhHHHHHH-hcCCC---cchHHHHHHHHHHHHHHHHHH
Q 011277          268 DRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFK-SAGLS---SGLANVFVGIANLLGSVVAMV  343 (489)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~i~~~~g~~~~g~  343 (489)
                      +..++++ ....+.++++.+.......++.....+..    .++.+..++ ..+.+   .+....+..++.+++.++.|+
T Consensus       239 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~  313 (485)
T TIGR00711       239 ELTDDNP-LVDLRLFKYRNFTIGCVYMSLLGLGLYGS----FYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGR  313 (485)
T ss_pred             HHcCCCC-ccCHHHHcCCChHHHHHHHHHHHHHHHHH----HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            0011111 11134566666655544433333322222    223333332 23433   456677778889999999999


Q ss_pred             HhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHH
Q 011277          344 LMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAV  423 (489)
Q Consensus       344 l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~  423 (489)
                      +.||+|||+.+..+.....++........   .+... .+......++.+++.+....+.. ....|..|++.|+++.|+
T Consensus       314 l~~r~~~~~~~~~g~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~l~g~g~~~~~~~~~-~~~~~~~~~~~~g~~~~~  388 (485)
T TIGR00711       314 MGDKIDPRKLVTIGLILYAVGFYWRAFTF---TPDTP-FLAIALPQFIRGFGMGCFFMPLT-TIALSGLPPHKIARGSSL  388 (485)
T ss_pred             HHhhcCcHHHHHHHHHHHHHHHHHHhccC---CCCCC-HHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCCHHHHhHHHHH
Confidence            99999999988777666665554433111   11111 11111122233333322222333 245577899999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 011277          424 CMSVHWVINFFVGLLFLRLLE  444 (489)
Q Consensus       424 ~~~~~~~~~~~~~~~~~~l~~  444 (489)
                      .+...++++.+++.+...+.+
T Consensus       389 ~~~~~~~g~~ig~~i~g~~~~  409 (485)
T TIGR00711       389 SNFTRQLGGSIGTALITTILT  409 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999888777665

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.96  E-value=1.5e-27  Score=234.81  Aligned_cols=361  Identities=14%  Similarity=0.142  Sum_probs=238.2

Q ss_pred             HHHHHHHhhhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHH
Q 011277           54 LVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGAS  133 (489)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~  133 (489)
                      ...+...+..+......++.+|.+.+|+|.+.+  +.++..+.+.+++.+++++.|+++||+|||+++..+.++.+++.+
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~--~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~   83 (382)
T PRK10091          6 LSLALGTFGLGMAEFGIMGVLTELAHDVGISIP--AAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNA   83 (382)
T ss_pred             HHHHHHHHHHHhhHHHHHhChHHHHHHcCCCHH--HHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHH
Confidence            445566677777777788889999999998754  468999999999999999999999999999999999999999999


Q ss_pred             HHhhcchHHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHH
Q 011277          134 ISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWV  213 (489)
Q Consensus       134 l~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~  213 (489)
                      ++++++|++.+++.|+++|++.|...+....++.|++|+++|++..+.+..+..+|..+++.++..+.+..+ ||+.|++
T Consensus        84 l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g-wr~~f~~  162 (382)
T PRK10091         84 MFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFS-WRYTFLL  162 (382)
T ss_pred             HHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhcc-HHHHHHH
Confidence            999999999999999999999998888888889999999999999999999999998888888777766666 7999998


Q ss_pred             HHHHHHHHHH-HhhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHHH
Q 011277          214 SIVPAAILCL-AMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFI  292 (489)
Q Consensus       214 ~~i~~~~~~~-~~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (489)
                      .++..++..+ ...+.||.++    +.+ .+.+             +                  ..+.++++..+....
T Consensus       163 ~~~~~~~~~~~~~~~lp~~~~----~~~-~~~~-------------~------------------~~~~~~~~~~~~~~~  206 (382)
T PRK10091        163 IAVFNIAVLASIYFWVPDIRD----EAK-GGLR-------------E------------------QFHFLRSPAPWLIFA  206 (382)
T ss_pred             HHHHHHHHHHHHHHhCCCCCc----ccc-cCHH-------------H------------------HHHHhcChHHHHHHH
Confidence            6554444333 3445677531    000 0000             0                  001122222222211


Q ss_pred             HHHHHHHHhhhhHHHHHHh-HHHHHHhcCCCc---chHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHH
Q 011277          293 GSTLFALQQLSGINAIFYF-SSSVFKSAGLSS---GLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQ  368 (489)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~  368 (489)
                      ...+   .. .+......+ .+...+..+.+.   +.......++..++.++.+++.||+|+|+.+..+.....++.++.
T Consensus       207 ~~~~---~~-~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~  282 (382)
T PRK10091        207 ATMF---GN-AGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLML  282 (382)
T ss_pred             HHHH---HH-HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHH
Confidence            1111   11 111111122 222223345443   455566778889999999999999999998877766655554433


Q ss_pred             HHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-hC
Q 011277          369 VAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQ-LG  447 (489)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~g  447 (489)
                      .....    . ....  ....++...++.....|.......+..|.+.++.+  ..+...+++..++|.+.+.+.+. .+
T Consensus       283 ~~~~~----~-~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~~~~~  353 (382)
T PRK10091        283 FFFGG----M-KTAS--LIFAFICCAGLFALSAPLQILLLQNAKGGELLGAA--GGQIAFNLGSAIGAYCGGMMLTLGLA  353 (382)
T ss_pred             HHHHh----h-HHHH--HHHHHHHHHHHHhhhHHHHHHHHHhCCcchHHHHH--HHHHHHHHHHHHHHHHhHHHHHcccC
Confidence            22111    1 1111  11111222221111122222334455555555554  34566788999999988888885 56


Q ss_pred             CchhhHHHHHHHHHHHHHH
Q 011277          448 PQLLYSIFGTFCLMAVAFV  466 (489)
Q Consensus       448 ~~~~~~~~~~~~~~~~~~~  466 (489)
                      +...+.+.++++++.....
T Consensus       354 ~~~~~~~~~~~~~~~~~~~  372 (382)
T PRK10091        354 YNYVALPAALLSFAAMSSL  372 (382)
T ss_pred             cchHHHHHHHHHHHHHHHH
Confidence            7777777666655554433

>TIGR00895 2A0115 benzoate transport

Probab=99.96  E-value=1.7e-27  Score=235.79  Aligned_cols=375  Identities=19%  Similarity=0.251  Sum_probs=242.4

Q ss_pred             HHHHHHHHHhhhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHH
Q 011277           52 HVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIG  131 (489)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~  131 (489)
                      ......+..+..+++....+...|.+.+++|.+.  .+.+++.+.+.++..++.++.|+++||+|||+.+..+.++..++
T Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~   95 (398)
T TIGR00895        18 AIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDP--VQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVF   95 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHhhccCCCH--HHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHH
Confidence            3444555566677777777778899999988764  35688999999999999999999999999999999999999999


Q ss_pred             HHHHhhcchHHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHH
Q 011277          132 ASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICF  211 (489)
Q Consensus       132 ~~l~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f  211 (489)
                      .++.+.+++++.+++.|++.|++.+...+....++.|++|+++|++..++...+..+|..+++.++..+.+..+ ||+.|
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g-~~~~~  174 (398)
T TIGR00895        96 TLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFG-WRSLF  174 (398)
T ss_pred             HHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhccc-ceeeh
Confidence            99999999999999999999999999999999999999999999999999999999999999888877766666 68888


Q ss_pred             HHHH-HHHHHHHHHhhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHH
Q 011277          212 WVSI-VPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVV  290 (489)
Q Consensus       212 ~~~~-i~~~~~~~~~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (489)
                      ++.+ +..+...+...++||++++...+ +.++..+..++.......+. .++..+.++.++..+...+..++++..+..
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (398)
T TIGR00895       175 YVGGIAPLLLLLLLMRFLPESIDFLVSK-RPETVRRIVNAIAPQMQAEA-QSALPEQKATQGTKRSVFKALFQGKTARIT  252 (398)
T ss_pred             hhhhhHHHHHHHHHHHhCCCCChHHHhc-CHHHHHHHHHHHHHhccccc-cccccccccccchhhHHHHHHhcchhHHHH
Confidence            7763 44444455566789998765544 33332222222211100000 000000000000011112222322222222


Q ss_pred             HHHHHHHHHHhhhhHHHHHHhHHHHHHhcCCC---cchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHH
Q 011277          291 FIGSTLFALQQLSGINAIFYFSSSVFKSAGLS---SGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAI  367 (489)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~  367 (489)
                      ........+... .......+.+...+..+.+   .+.......++..++.++.++++||++||+... ......+...+
T Consensus       253 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~  330 (398)
T TIGR00895       253 VLLWLLYFMLLV-GVYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTAL-LLLLGAVFAVL  330 (398)
T ss_pred             HHHHHHHHHHHH-HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHH-HHHHHHHHHHH
Confidence            221112211111 1222233444444555544   345566677888999999999999999984433 33333332222


Q ss_pred             HHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 011277          368 QVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLR  441 (489)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~  441 (489)
                      .....    .. ..  ......++.+++.+. ..+....+..|.+|++.|+++.|+.+.+.+++..++|.+.+.
T Consensus       331 ~~~~~----~~-~~--~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~  396 (398)
T TIGR00895       331 VGSTL----FS-PT--LLLLLGAIAGFFVNG-GQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGY  396 (398)
T ss_pred             HHHHh----hC-HH--HHHHHHHHHHHHHHH-HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Confidence            22111    11 11  111112222222221 234556789999999999999999999999999988877654

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.96  E-value=2.9e-27  Score=234.81  Aligned_cols=357  Identities=17%  Similarity=0.135  Sum_probs=235.8

Q ss_pred             HHHHHHHHHHHhhhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHH
Q 011277           50 FPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMI  129 (489)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~  129 (489)
                      +...+.+.+..+...++.+.+.+.+|.+.+|+|.+.+  +.++..+.+.+++.+++++.|+++||+|||+++..+.++..
T Consensus        12 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~--~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~   89 (406)
T PRK15402         12 LLFPLCLVLFEFATYIANDMIQPGMLAVVEDFNAGAE--WVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFI   89 (406)
T ss_pred             HHHHHHHHHHHHHHHhhhhhHhcchHHHHHHhCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence            3345556666777777788888889999999998644  45788899999999999999999999999999999999999


Q ss_pred             HHHHHHhhcchHHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHH
Q 011277          130 IGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRI  209 (489)
Q Consensus       130 i~~~l~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~  209 (489)
                      ++..+.+.+++++.+++.|+++|++.+...+....++.|.+|+++|++..++......+|..+++.++..+.+..+ ||+
T Consensus        90 ~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~-w~~  168 (406)
T PRK15402         90 LTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLP-WRG  168 (406)
T ss_pred             HHHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-ccH
Confidence            9999999999999999999999999988878888899999999999999888887777888888888776666566 699


Q ss_pred             HHHHHHHHHHHHHH-HhhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchh
Q 011277          210 CFWVSIVPAAILCL-AMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFR  288 (489)
Q Consensus       210 ~f~~~~i~~~~~~~-~~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (489)
                      .|++..+..++..+ .....||+++..   ++..+             .++.              ...+++.+++++++
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-------------~~~~--------------~~~~~~~~~~~~~~  218 (406)
T PRK15402        169 MFVLFAALAALSFFGLWRAMPETAGRV---GEKLS-------------LKEL--------------GRDYKLVLKNRRFV  218 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCCccc---ccccc-------------HHHH--------------HHHHHHHHcCcHHH
Confidence            98876555444433 334567764310   00000             0000              01123445555554


Q ss_pred             HHHHHHHHHHHHhhhhHHHHHHhHHHHH-HhcCCC---cchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHH
Q 011277          289 VVFIGSTLFALQQLSGINAIFYFSSSVF-KSAGLS---SGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVS  364 (489)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~  364 (489)
                      .......+.......    ...+.+..+ +..+.+   .+.......++..++.++.+++.||+++|+.+..+.....++
T Consensus       219 ~~~~~~~~~~~~~~~----~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g  294 (406)
T PRK15402        219 AGALALGLVSLPLLA----WIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAG  294 (406)
T ss_pred             HHHHHHHHHHHHHHH----HHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence            443332222211111    111122222 223443   234445566778889999999999999999887776666555


Q ss_pred             HHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011277          365 MAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLE  444 (489)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~  444 (489)
                      ..+....... ... ...+ ......++..+.+... +......... +++.|++..++.+....++..+++.+...+.+
T Consensus       295 ~~~~~~~~~~-~~~-~~~~-~~~~~~~~g~g~~~~~-~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~  369 (406)
T PRK15402        295 LLLAALATVI-SSH-AYLW-LTAGLSLYAFGIGLAN-AGLYRLTLFS-SDVSKGTVSAAMGMLSMLIFTVGIELSKHAYL  369 (406)
T ss_pred             HHHHHHHHHc-ccc-cHHH-HHHHHHHHHHHHHHHh-hhHHHHHhhh-ccccccHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            5544332211 111 1111 1222233333332222 2222222222 44889999999999999998888888777766


Q ss_pred             HhCC
Q 011277          445 QLGP  448 (489)
Q Consensus       445 ~~g~  448 (489)
                      ..+.
T Consensus       370 ~~~~  373 (406)
T PRK15402        370 GGGN  373 (406)
T ss_pred             CCch
Confidence            5554

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.96  E-value=5e-28  Score=242.38  Aligned_cols=388  Identities=13%  Similarity=0.085  Sum_probs=238.6

Q ss_pred             hhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhc---
Q 011277           62 LFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATT---  138 (489)
Q Consensus        62 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~---  138 (489)
                      ....+...+....|.+. ++|.+.  .+.++..+.+.++..+++++.|+++||+|||+++..+.++.+++.++.+..   
T Consensus        38 ~~~~~~~~~~~~~p~~~-~~g~s~--~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~  114 (438)
T TIGR00712        38 AYYLVRKNFALAMPYLV-EQGFSK--GELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWA  114 (438)
T ss_pred             HHHHHhccHHhhhHHHH-HcCCCH--hHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccc
Confidence            33333333445566665 457654  456899999999999999999999999999999999999999988887664   


Q ss_pred             -chHHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhc-ccccCCchhHHHHHHHHH
Q 011277          139 -RNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGI-PVKEIAGWWRICFWVSIV  216 (489)
Q Consensus       139 -~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~-~l~~~~~~wr~~f~~~~i  216 (489)
                       .++..+.+.|++.|++.|...+....++.|++|+++||+++++++.+..+|..+++.+.. ......+ ||+.|++.++
T Consensus       115 ~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~-w~~~f~~~~~  193 (438)
T TIGR00712       115 TSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFND-WHAALYFPAI  193 (438)
T ss_pred             cchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhh-hHHHHHHHHH
Confidence             467778899999999999888888888999999999999999999988888766655433 3333334 7999988655


Q ss_pred             HHHHH-HHHhhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchh-HHHhhhccchhHHHHHH
Q 011277          217 PAAIL-CLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVK-FEELLYGRHFRVVFIGS  294 (489)
Q Consensus       217 ~~~~~-~~~~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  294 (489)
                      ..++. .+..+++||+|+....+ +.++ .   +   ++.. ++ .   .+..+.+...... .+..++++.++......
T Consensus       194 ~~~i~~~~~~~~~~~~~~~~~~~-~~~~-~---~---~~~~-~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (438)
T TIGR00712       194 CAIIVALFAFAMMRDTPQSCGLP-PIEE-Y---R---NDYP-DD-Y---NEKAEQELTAKEIFMQYVLPNKLLWYIAIAN  260 (438)
T ss_pred             HHHHHHHHHHHhccCCHHhcCCC-Cchh-c---c---cccc-cc-c---ccccccccchHHHHHHHHccCchHHHHHHHH
Confidence            55543 34456678887532100 0000 0   0   0000 00 0   0000000000001 12244555554443332


Q ss_pred             HHHHHHhhhhHHHHHHhHHHHHHh-cCCC---cchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHH
Q 011277          295 TLFALQQLSGINAIFYFSSSVFKS-AGLS---SGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVA  370 (489)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~  370 (489)
                      .+....    .+....+.+..+++ .+.+   .++......+...++.+++++++||+++++....+.....+.......
T Consensus       261 ~~~~~~----~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~  336 (438)
T TIGR00712       261 VFVYLL----RYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIV  336 (438)
T ss_pred             HHHHHH----HHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHH
Confidence            222211    12233344444443 3443   355667777888999999999999996543222232222211111111


Q ss_pred             HhhccCCCchhhHHHHHHHHHHHHHHh-cCccccccccccccCCchhhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHhCC
Q 011277          371 ASSSYIPGSASLYLSVGGMLMFVLTFA-LGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVIN-FFVGLLFLRLLEQLGP  448 (489)
Q Consensus       371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~g~  448 (489)
                      ....  +. ...+.....+  +..++. .+..+.......|.+|++.|+++.|+.+.++++++ .++|.+.+.+.+..|+
T Consensus       337 ~~~~--~~-~~~~~~~~~~--~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~  411 (438)
T TIGR00712       337 YWMN--PA-GNPLVDMICM--IVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGW  411 (438)
T ss_pred             HHhc--CC-CchHHHHHHH--HHHHHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhccc
Confidence            1110  00 1111111111  112221 12112223356799999999999999999988875 5788888888888888


Q ss_pred             chhhHHHHHHHHHHHHHHHhhcccCCC
Q 011277          449 QLLYSIFGTFCLMAVAFVKRNVVETKG  475 (489)
Q Consensus       449 ~~~~~~~~~~~~~~~~~~~~~~~et~~  475 (489)
                      ...+.+++++++++.+.....+||.|+
T Consensus       412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  438 (438)
T TIGR00712       412 DGGFMVMIGGSILAVILLIVVMIGEKR  438 (438)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence            888888888787777777788888764

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.96  E-value=3.5e-27  Score=233.97  Aligned_cols=368  Identities=16%  Similarity=0.143  Sum_probs=229.5

Q ss_pred             HHHHHHHHhhhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHH
Q 011277           53 VLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGA  132 (489)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~  132 (489)
                      ...+.+..++...+..+..+++|++.++++.+.++  .++..+.+.+|+.++++++|+++||+|||+++..+.+++++++
T Consensus        18 ~~~~~~~~~~~~~~~~~~~p~l~~i~~~~~~~~~~--~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~   95 (413)
T PRK15403         18 PMALILYDFAAYLTTDLIQPGIINVVRDFNADVSL--APASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLAC   95 (413)
T ss_pred             HHHHHHHHHHHHHHHHhhccCHHHHHHHhCCCHHH--HHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHH
Confidence            34446666667778889999999999999986554  4688999999999999999999999999999999999999999


Q ss_pred             HHHhhcchHHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHH
Q 011277          133 SISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFW  212 (489)
Q Consensus       133 ~l~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~  212 (489)
                      ++++.++|++.++++|+++|++.+...+....++.|++|+++|++..+++.....+|..+|++++..+.+..+ ||+.|+
T Consensus        96 ~~~~~a~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~g-w~~~f~  174 (413)
T PRK15403         96 AATLFTTSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVH-WKVLFA  174 (413)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-HHHHHH
Confidence            9999999999999999999999887667777889999999999999999999999999999999877766656 799999


Q ss_pred             HHHHHHHHHHHH-hhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHH
Q 011277          213 VSIVPAAILCLA-MVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVF  291 (489)
Q Consensus       213 ~~~i~~~~~~~~-~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (489)
                      +..+..++..+. .+.+||+++.   +++..+             .+..              ...+++.++++.++...
T Consensus       175 ~~~~~~~i~~~~~~~~lp~~~~~---~~~~~~-------------~~~~--------------~~~~~~ll~~~~~~~~~  224 (413)
T PRK15403        175 IIAVMGLIAFVGLLLAMPETVKR---GAVPFS-------------AKSV--------------LRDFRNVFRNRLFLTGA  224 (413)
T ss_pred             HHHHHHHHHHHHHHHhCCCCccc---cCCCCC-------------hHHH--------------HHHHHHHHcCHHHHHHH
Confidence            876655554443 4557887430   100000             0000              01234455555555443


Q ss_pred             HHHHHHHHHhhhhHHHHHHhHHHHHHh-cCCCc---chHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHH
Q 011277          292 IGSTLFALQQLSGINAIFYFSSSVFKS-AGLSS---GLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAI  367 (489)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~  367 (489)
                      ....+....    ......+.|.++++ .+.+.   ++...+...+.++++.+.+++.+|..+++..........++..+
T Consensus       225 l~~~~~~~~----~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ig~~l  300 (413)
T PRK15403        225 ATLSLSYIP----MMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVPIQLVGLAL  300 (413)
T ss_pred             HHHHHHHHH----HHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHH
Confidence            332222111    11222233433333 34443   34455566777777777777665444434332222222222222


Q ss_pred             HHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 011277          368 QVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLG  447 (489)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g  447 (489)
                      ....... .+..  .......+.++..+.+....+... ..-+. ....++++.++.+.+...+...++.....+... +
T Consensus       301 ~~~~~~~-~~~~--~~~~~~~~~l~~~G~~~~~p~~~~-~al~~-~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~-~  374 (413)
T PRK15403        301 LIVGNLL-WPHV--WLWSVLGTSLYAFGIGLIFPTLFR-FTLFS-NNLPKGTVSASLNMVILMVMAVSVEIGRWLWFN-G  374 (413)
T ss_pred             HHHHHHH-cccc--HHHHHHHHHHHHHHHHHHhHHHHH-HHhcc-CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHc-C
Confidence            2211100 1111  111122233333333222212211 11111 122378888888888877777777665554433 5


Q ss_pred             CchhhHHHHHHHHHHH
Q 011277          448 PQLLYSIFGTFCLMAV  463 (489)
Q Consensus       448 ~~~~~~~~~~~~~~~~  463 (489)
                      ....+...+.++.+..
T Consensus       375 ~~~~~~~~~~~~~~~~  390 (413)
T PRK15403        375 GRLPFHLLAVVAGVIV  390 (413)
T ss_pred             CchHHHHHHHHHHHHH
Confidence            5566665555544443

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.96  E-value=1.1e-26  Score=228.53  Aligned_cols=361  Identities=18%  Similarity=0.186  Sum_probs=245.9

Q ss_pred             HHHHHHHHHhhhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHH
Q 011277           52 HVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIG  131 (489)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~  131 (489)
                      .+..+.++.++.+.+.+..++.+|.+.+++|.+  +.+.|++.+.+.+++.+++++.|+++||+|||+++..+.++.+++
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s--~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~   84 (381)
T PRK03633          7 PVLLLLCGLLLLTLAIAVLNTLVPLWLAQEHLP--TWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAG   84 (381)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHHHcCCC--HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            355667788888899999999999999999885  446799999999999999999999999999999999999999999


Q ss_pred             HHHHhhcchHHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHH
Q 011277          132 ASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICF  211 (489)
Q Consensus       132 ~~l~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f  211 (489)
                      ..+++.++|++.+++.|+++|++.+...+.....+.|..++++|+++.+.+..+..+|..+|+.++..+.+... |+..+
T Consensus        85 ~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~-~~~~~  163 (381)
T PRK03633         85 CAGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTELM-SVLPW  163 (381)
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc-chHHH
Confidence            99999999999999999999999998877777777889999999999999999999999999999887765422 22222


Q ss_pred             HHHHHHHHHHHHHhhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHH
Q 011277          212 WVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVF  291 (489)
Q Consensus       212 ~~~~i~~~~~~~~~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (489)
                      ........+..+.....+|++      .+                            ++   +..+..+.++++.++...
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~------~~----------------------------~~---~~~~~~~~~~~~~~~~~~  206 (381)
T PRK03633        164 VTGLVLAAILPLLFTRILNQQ------AE----------------------------NH---DSTSIWPMLKLRQARLGV  206 (381)
T ss_pred             HHHHHHHHHHHHHHhcccCCC------CC----------------------------CC---CCCCHHHHHHhcchHHHH
Confidence            211111111111111111110      00                            00   001223344445544332


Q ss_pred             HHHHHHHHHhhhhHHHHHHhHHHHHHhcCCCc---chHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHH
Q 011277          292 IGSTLFALQQLSGINAIFYFSSSVFKSAGLSS---GLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQ  368 (489)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~  368 (489)
                      .........    ......+.+...++.+.+.   +.......++.+++.+..+++.||+++|+.+..+.....++....
T Consensus       207 ~~~~~~~~~----~~~~~~~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~  282 (381)
T PRK03633        207 NGCIISGIV----LGSLYGLMPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAM  282 (381)
T ss_pred             HHHHHHHHH----HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHH
Confidence            221111111    1111223344444445543   344455667888999999999999999998877666555544332


Q ss_pred             HHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 011277          369 VAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGP  448 (489)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~  448 (489)
                      .  . .     ....   ....+++... .+..|....+..|..|++.++...+..+...++++.++|.+.+.+.++.++
T Consensus       283 ~--~-~-----~~~~---~~~~l~g~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~  350 (381)
T PRK03633        283 L--S-Q-----AAMA---PALFILGAAG-FTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSD  350 (381)
T ss_pred             h--h-h-----HHHH---HHHHHHHHHH-HhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence            2  1 0     0111   1111222211 123455556778988888888788887777888999999999989898898


Q ss_pred             chhhHHHHHHHHHHHHHHHh
Q 011277          449 QLLYSIFGTFCLMAVAFVKR  468 (489)
Q Consensus       449 ~~~~~~~~~~~~~~~~~~~~  468 (489)
                      .+.|.+.+.+.++..+..++
T Consensus       351 ~~~f~~~~~~~l~~~~~~~~  370 (381)
T PRK03633        351 NLLFIMIASVSFIYLLMLLR  370 (381)
T ss_pred             cHHHHHHHHHHHHHHHHHHh
Confidence            88888888777766655543

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.96  E-value=1.5e-26  Score=227.99  Aligned_cols=360  Identities=18%  Similarity=0.154  Sum_probs=233.2

Q ss_pred             HHHHHHhhhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHH
Q 011277           55 VATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASI  134 (489)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l  134 (489)
                      .+..+.+..........+.+|.+.+|+|++.+  +.++..+.+.++..+++++.|+++||+|||+++..+.++++++.++
T Consensus        24 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~--~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~  101 (394)
T PRK10213         24 SVAFCVACLIIVEFLPVSLLTPMAQDLGISEG--VAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLL  101 (394)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHcCCCHH--HHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHH
Confidence            33333333333332334457889999998754  4578889999999999999999999999999999999999999999


Q ss_pred             HhhcchHHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHH
Q 011277          135 SATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVS  214 (489)
Q Consensus       135 ~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~  214 (489)
                      ++.++|++.+++.|+++|++.|...+....++.|++|+++|+++.++...+..+|..+++.++..+.+..+ ||+.|++.
T Consensus       102 ~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~g-w~~~f~~~  180 (394)
T PRK10213        102 VSFANSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIG-WRNVFNAA  180 (394)
T ss_pred             HHHHChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-HHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999988877767 69999886


Q ss_pred             HHHHHHHHHH-hhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHHHH
Q 011277          215 IVPAAILCLA-MVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIG  293 (489)
Q Consensus       215 ~i~~~~~~~~-~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (489)
                      .+..++..+. ....||+|+.     + ++                              ...+..+.++++.++.....
T Consensus       181 ~~l~~~~~l~~~~~~p~~~~~-----~-~~------------------------------~~~~~~~~l~~~~~~~~~~~  224 (394)
T PRK10213        181 AVMGVLCIFWIIKSLPSLPGE-----P-SH------------------------------QKQNTFRLLQRPGVMAGMIA  224 (394)
T ss_pred             HHHHHHHHHHHHHHCCCCCcc-----c-cc------------------------------chhHHHHHhcCHHHHHHHHH
Confidence            5544443332 2335665310     0 00                              00011233444444433322


Q ss_pred             HHHHHHHhhhhHHHHHHhHHHHHHhcCCCc---chHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHH
Q 011277          294 STLFALQQLSGINAIFYFSSSVFKSAGLSS---GLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVA  370 (489)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~  370 (489)
                      ..+.....+.   ...+..+...++.+.+.   +......+++..++.++.+++.||.+++ .+..+.....+....+..
T Consensus       225 ~~~~~~~~~~---~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~~~-~l~~~~~~~~~~~~~l~~  300 (394)
T PRK10213        225 IFMSFAGQFA---FFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSVKL-ALAGAPLVLAVSALVLTL  300 (394)
T ss_pred             HHHHHHHHHH---HHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccchh-HHHHHHHHHHHHHHHHHH
Confidence            2222211111   11122233344445543   4556667788899999999999996544 333333322222222211


Q ss_pred             HhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCch
Q 011277          371 ASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQL  450 (489)
Q Consensus       371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~  450 (489)
                      ...    .   .+......+++++++... .+....+..+..| +.+++..+....+.+++..+++.+.+.+.+..|...
T Consensus       301 ~~~----~---~~~~~~~~~l~G~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~  371 (394)
T PRK10213        301 WGS----D---KIVATGVAIIWGLTFALV-PVGWSTWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYALDNIGLTS  371 (394)
T ss_pred             Hhh----h---HHHHHHHHHHHHHHHHhh-hHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhh
Confidence            111    1   111122233333333322 2323334556667 445666677777788899999999999988888766


Q ss_pred             hhHHHHHHHHHHHHHH
Q 011277          451 LYSIFGTFCLMAVAFV  466 (489)
Q Consensus       451 ~~~~~~~~~~~~~~~~  466 (489)
                      .+...+.+.++..++.
T Consensus       372 ~~~~~~~~~~~~~~~~  387 (394)
T PRK10213        372 PLMLSGTLMLLTALLV  387 (394)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            6666555554444443

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.96  E-value=1.8e-27  Score=232.77  Aligned_cols=352  Identities=15%  Similarity=0.112  Sum_probs=239.0

Q ss_pred             HHHhhhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhh
Q 011277           58 LSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISAT  137 (489)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~  137 (489)
                      .+.++.....+..++.+|.+..|++.+  +.+.+++.+.+.++..+++++.|+++||+|||+++..+.++..++..+.+.
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~s--~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~   83 (365)
T TIGR00900         6 AAQLISLIGTAITQVALPLYVLAGTGS--ASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPF   83 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcc--HHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHH
Confidence            344555566666777888888887764  456789999999999999999999999999999999999999888888887


Q ss_pred             cc-----hHHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHH
Q 011277          138 TR-----NLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFW  212 (489)
Q Consensus       138 ~~-----~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~  212 (489)
                      +.     +++.+++.|+++|++.+...+....++.|++|+++|++..++.+.+..+|..+++.++..+.+..+ ||+.|+
T Consensus        84 ~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g-~~~~~~  162 (365)
T TIGR00900        84 VALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLG-IKWAIW  162 (365)
T ss_pred             HHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHH
Confidence            77     999999999999999999999999999999999999999999999999999999999887766666 699998


Q ss_pred             HHHHHHHHHHHHhhh--ccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHH
Q 011277          213 VSIVPAAILCLAMVF--CAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVV  290 (489)
Q Consensus       213 ~~~i~~~~~~~~~~~--~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (489)
                      +..+..++..+..+.  .||+++    +++.+..++.             .++.          ...+++.++++.++..
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~-------------~~~~----------~~~~~~~~~~~~~~~~  215 (365)
T TIGR00900       163 VDAVGFAISALLIVSVRIPELAA----SEIQALSNAV-------------LRDT----------REGIKFVLKNPLLRTL  215 (365)
T ss_pred             HHHHHHHHHHHHHHhcccccCCC----ccccccchhH-------------HHHH----------HhHHHHHHcCcHHHHH
Confidence            765554444333332  233221    0000000000             0000          0113334455555544


Q ss_pred             HHHHHHHHHHhhhhH-HHHHHhHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHH
Q 011277          291 FIGSTLFALQQLSGI-NAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQV  369 (489)
Q Consensus       291 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~  369 (489)
                      .....+......... ...+++..+.++......+.......++.+++.++.+++.||++||+....+....+++.....
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  295 (365)
T TIGR00900       216 LLLALLFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVG  295 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHH
Confidence            433333222221111 2223333322222222345666677788899999999999999999987766555554444332


Q ss_pred             HHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 011277          370 AASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLG  447 (489)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g  447 (489)
                      ...     .  ..+......+..+++.+. ..+....+..|..|++.|+++.|+.+.+.+++..+++.+.+.+.+..|
T Consensus       296 ~~~-----~--~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~~g  365 (365)
T TIGR00900       296 LTP-----P--NFPLFLVLWFAIGVGYGP-INVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADHLG  365 (365)
T ss_pred             hhc-----h--hHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            211     1  112222222233333222 234556688999999999999999999999999999998888777543

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.96  E-value=1.9e-28  Score=240.83  Aligned_cols=365  Identities=16%  Similarity=0.137  Sum_probs=231.0

Q ss_pred             hccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhcchHHH
Q 011277           64 GYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIG  143 (489)
Q Consensus        64 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~~  143 (489)
                      .++....+...|.+.+++|.+.+  +.+++.+.+.++..+++++.|+++||+|||+++..+.++..++.++.+.+++++.
T Consensus         8 ~~~~~~~~~~~~~~~~~~g~s~~--~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~   85 (379)
T TIGR00881         8 YLVRKNFALAMPYLVEEIGLSKT--DLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTSLWV   85 (379)
T ss_pred             HHhHHhhhhhhHHHHHHhCCCHh--HHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhhhHHH
Confidence            34455566778889999988754  5689999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHH-HhhcccccCCchhHHHHHHHHHHHHH-H
Q 011277          144 MLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSL-LIGIPVKEIAGWWRICFWVSIVPAAI-L  221 (489)
Q Consensus       144 l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~-~~~~~l~~~~~~wr~~f~~~~i~~~~-~  221 (489)
                      +++.|++.|++.+...+....++.|++|+++|++..++...+..+|..+++ +++..+.+..+ ||+.|++..+..++ .
T Consensus        86 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  164 (379)
T TIGR00881        86 MAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYS-WHWVFIVPGIIAIIVS  164 (379)
T ss_pred             HHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCC-chhHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999988888 45555555555 69998876544443 3


Q ss_pred             HHHhhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHHHHHHHHHHHh
Q 011277          222 CLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQ  301 (489)
Q Consensus       222 ~~~~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (489)
                      .+...+.+|+|+....+  .++.. .     .++ .+.   +.++.++.....+...++.++++.++.......+.....
T Consensus       165 ~~~~~~~~~~~~~~~~~--~~~~~-~-----~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (379)
T TIGR00881       165 LICFLLLRDSPQSCGLP--PAEEM-P-----NEE-PDG---DAEKKEEELTKKQIFLQYVLLNKVLWYISLGYVFVYVVR  232 (379)
T ss_pred             HHHheeeCCCccccccC--ccccC-c-----ccc-ccc---ccccccccccchHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence            34445667765421100  00000 0     000 000   000000000111122344555555554443333222211


Q ss_pred             hhhHHHHHHhHHHHH-HhcCCC---cchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCC
Q 011277          302 LSGINAIFYFSSSVF-KSAGLS---SGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIP  377 (489)
Q Consensus       302 ~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~  377 (489)
                      .    ....+.+..+ +..+.+   .+.......++.+++.++.+++.||..+|+.....................  .+
T Consensus       233 ~----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~--~~  306 (379)
T TIGR00881       233 T----GILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWL--NP  306 (379)
T ss_pred             H----HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhc--Cc
Confidence            1    1122222222 233443   345666777888999999999999864332221211111111111111110  01


Q ss_pred             CchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchh
Q 011277          378 GSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLL  451 (489)
Q Consensus       378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~  451 (489)
                      ....... .......+. ...+..+....+..|.+|++.|+++.|+.+.+.++++.++|.+.+.+.+..|+...
T Consensus       307 ~~~~~~~-~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~  378 (379)
T TIGR00881       307 AANPLMD-LICLFALGF-LVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFGWAGA  378 (379)
T ss_pred             chhHHHH-HHHHHHHHH-HHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhccccc
Confidence            1111111 111111111 12233334455788999999999999999999999999999999999888877544

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.96  E-value=4.8e-27  Score=237.07  Aligned_cols=366  Identities=16%  Similarity=0.096  Sum_probs=214.5

Q ss_pred             hhhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhcch
Q 011277           61 FLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRN  140 (489)
Q Consensus        61 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~  140 (489)
                      +...++.....+.+|.+.+|+|++.+  +.+++.+.+.+++.+++++.|+++||+|||+++..+.++++++.++.+++++
T Consensus        46 ~~~~~~~~~~~~~~~~l~~~~gls~~--~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~s  123 (476)
T PLN00028         46 FTCFVSTFAAAPLLPIIRDNLNLTKS--DIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVSS  123 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhcC
Confidence            33333344456778899999998644  4578888999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhccc----cc-----CCchhHHHH
Q 011277          141 LIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPV----KE-----IAGWWRICF  211 (489)
Q Consensus       141 ~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l----~~-----~~~~wr~~f  211 (489)
                      +..+++.|+++|++.+... ....+++|++|+++||++.++......+|..+++.+...+    .+     ..+ ||+.|
T Consensus       124 ~~~l~~~r~l~G~~~~~~~-~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~g-Wr~~f  201 (476)
T PLN00028        124 ATGFIAVRFFIGFSLATFV-SCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTA-WRIAF  201 (476)
T ss_pred             HHHHHHHHHHHHHHHHhhH-HHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhh-hHHHH
Confidence            9999999999999987654 3456789999999999999998765555544443332111    11     124 79999


Q ss_pred             HHHHHHHHHHHHHhhhccC-ChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHH
Q 011277          212 WVSIVPAAILCLAMVFCAE-SPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVV  290 (489)
Q Consensus       212 ~~~~i~~~~~~~~~~~~~E-sp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (489)
                      ++.++..++..+..+++++ .|+     ++.++.    ++.               .+.++......+++.+++++.+..
T Consensus       202 ~i~g~l~l~~~l~~~~~~~~~p~-----~~~~~~----~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~  257 (476)
T PLN00028        202 FVPGLLHIIMGILVLTLGQDLPD-----GNYREL----KKS---------------GTMPKDSFSKVLRYGVTNYRTWIL  257 (476)
T ss_pred             HHHHHHHHHHHHHHHHHcCcCCC-----CchhhH----Hhc---------------CccccccHHHHHHHHHcCchhHHH
Confidence            9876666555444444443 321     111110    000               000000001123344444554433


Q ss_pred             HHHHHHHHHHhhhhHHHHHHhHHHHH-HhcCCCc---chHHHHHHHHHHHHHHHHHHHhhhcCCchh----HHHhhHHHH
Q 011277          291 FIGSTLFALQQLSGINAIFYFSSSVF-KSAGLSS---GLANVFVGIANLLGSVVAMVLMDKLGRKAL----LQWSFFSMA  362 (489)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~i~~~~g~~~~g~l~dr~grr~~----~~~~~~~~~  362 (489)
                      ...........    .....+.+..+ +..+.+.   +.......++..++.+++|+++||++||+.    .........
T Consensus       258 ~~~~~~~~~~~----~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~  333 (476)
T PLN00028        258 ALTYGYSFGVE----LTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQT  333 (476)
T ss_pred             HHHHHHHHHHH----HHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHH
Confidence            33221111111    11122233332 3345543   445566778889999999999999987521    111111111


Q ss_pred             HHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 011277          363 VSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRL  442 (489)
Q Consensus       363 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l  442 (489)
                      +..+......  . ...  ....+..++++........ +..+.+..|+.| +.|++..|+.+..+++++.+++.+.. .
T Consensus       334 l~~i~~~~~~--~-~~~--~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~-~~~g~~~g~~~~~g~lg~~i~~~l~~-~  405 (476)
T PLN00028        334 LGGVFCIWLG--R-ANS--LGAAIVVMILFSIFVQAAC-GATFGIVPFVSR-RSLGVISGLTGAGGNVGAVLTQLLFF-T  405 (476)
T ss_pred             HHHHHHHHhc--c-cch--HHHHHHHHHHHHHHHHHhh-hhhcccCcccCh-hhchhhhhhhhccccHHHHHHHHHHH-h
Confidence            1111111111  0 111  1111112222222222111 234445667755 79999999998888888888876543 1


Q ss_pred             HHHhCCchhhHHHHHHHHHHHHHH
Q 011277          443 LEQLGPQLLYSIFGTFCLMAVAFV  466 (489)
Q Consensus       443 ~~~~g~~~~~~~~~~~~~~~~~~~  466 (489)
                      .+..++...|.+.+++.+++.+..
T Consensus       406 ~~~~~y~~~f~~~~~~~~i~~~~~  429 (476)
T PLN00028        406 GSSYSTETGISLMGVMIIACTLPV  429 (476)
T ss_pred             cCCccHhhHHHHHHHHHHHHHHHH
Confidence            112345667777776666655443

>PRK12382 putative transporter; Provisional

Probab=99.96  E-value=2.1e-26  Score=227.61  Aligned_cols=356  Identities=17%  Similarity=0.170  Sum_probs=232.2

Q ss_pred             HHHhhhhccceeeccchhh-hhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHH-
Q 011277           58 LSSFLFGYHLGVVNEPLES-ISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASIS-  135 (489)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~-  135 (489)
                      .+.++.....+...+.+|. +.+|+|.+.  .+.|+..+.+.+++.++++++|+++||+|||+++..+.+.+.++.+.. 
T Consensus        22 ~~~~~~~~~~~~~~p~l~~~l~~~lg~s~--~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~   99 (392)
T PRK12382         22 FAVFLTYMTVGLPLPVIPLFVHHDLGFGN--TMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYL   99 (392)
T ss_pred             HHHHHHHHHHHHHhhhhhHHHHHhcCCcH--HHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHH
Confidence            3344444455566677775 567888764  457899999999999999999999999999999999988877665432 


Q ss_pred             --hh-----cchHHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhH
Q 011277          136 --AT-----TRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWR  208 (489)
Q Consensus       136 --~~-----~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr  208 (489)
                        +.     ..|++.++++|+++|++.+...+....++.|++|+++|++++++++.+..+|..+++.++..+.+..+ ||
T Consensus       100 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g-~~  178 (392)
T PRK12382        100 LAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFG-FA  178 (392)
T ss_pred             hhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhccC-hH
Confidence              22     35788899999999999998888788889999999999999999999999999899988877666666 68


Q ss_pred             HHHHHHHHHHHHHHHHhhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchh
Q 011277          209 ICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFR  288 (489)
Q Consensus       209 ~~f~~~~i~~~~~~~~~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (489)
                      +.+++..+..++........||++.      ++++          +.                     +.++..+  ..+
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~----------~~---------------------~~~~~~~--~~~  219 (392)
T PRK12382        179 ALALTTMVLPLLAWAFNGTVRKVPA------HAGE----------RP---------------------SLWSVVG--LIW  219 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCCCC------Cccc----------Cc---------------------hHHHHHH--HHH
Confidence            8776543333322222222233211      0000          00                     0000000  000


Q ss_pred             HHHHHHHHHHHHhhhhHHHHHHhHHHHHHhcCCC-cchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHH
Q 011277          289 VVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLS-SGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAI  367 (489)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~  367 (489)
                      .......+....    ......+.+..+++.+.+ .+......+++..++.++.+++.||+|+|+.+..+.....++..+
T Consensus       220 ~~~~~~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~  295 (392)
T PRK12382        220 KPGLGLALQGVG----FAVIGTFVSLYFASKGWAMAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLL  295 (392)
T ss_pred             HhHHHHHHHHHH----HhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHH
Confidence            000001111111    111112222233333332 344455566777889999999999999999887776666655444


Q ss_pred             HHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 011277          368 QVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLG  447 (489)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g  447 (489)
                      ....     ++ .  +.......+...+.+. ..|.......|.+|++.|+++.|+.+...+++..++|.+.+.+.+..|
T Consensus       296 ~~~~-----~~-~--~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g  366 (392)
T PRK12382        296 LWLA-----PT-A--WVALAGAALTGAGCSL-IFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFG  366 (392)
T ss_pred             HHHc-----cc-H--HHHHHHHHHHHHHHHh-HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            3221     11 1  1111122222222221 223444466788999999999999999999999999999998889889


Q ss_pred             CchhhHHHHHHHHHHHHHHHh
Q 011277          448 PQLLYSIFGTFCLMAVAFVKR  468 (489)
Q Consensus       448 ~~~~~~~~~~~~~~~~~~~~~  468 (489)
                      +...|.+.+.+.+++.+....
T Consensus       367 ~~~~~~~~~~~~~~~~~~~~~  387 (392)
T PRK12382        367 YPSVFLAGAISAVLGIIVTIL  387 (392)
T ss_pred             chHHHHHHHHHHHHHHHHHHh
Confidence            988888888777776665543

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.96  E-value=7.4e-27  Score=230.78  Aligned_cols=352  Identities=21%  Similarity=0.217  Sum_probs=213.8

Q ss_pred             hhccceeeccchhhhhhhcCCCCchhHHHHHHH--HHHH---HHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhh
Q 011277           63 FGYHLGVVNEPLESISLDLGFNGNTLAEGLVVS--MCLG---GAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISAT  137 (489)
Q Consensus        63 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s--~~~~---g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~  137 (489)
                      +.+|...++...+.+.+++..+.++.+.+...+  .+..   +..+++++.|+++||+|||+++..+.+++.++++++++
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~   84 (394)
T TIGR00883         5 EWFDFYLYGFAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGL   84 (394)
T ss_pred             hHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhh
Confidence            344444445555556666544222333333333  3333   33478999999999999999999999999999999999


Q ss_pred             cchHH--------HHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccc--------
Q 011277          138 TRNLI--------GMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVK--------  201 (489)
Q Consensus       138 ~~~~~--------~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~--------  201 (489)
                      ++++.        .+++.|+++|++.+...+....++.|++|+++|++..++...+..+|..+++.++..+.        
T Consensus        85 ~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~  164 (394)
T TIGR00883        85 LPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDAL  164 (394)
T ss_pred             CCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHh
Confidence            99876        47889999999999999999999999999999999999999999999888877654332        


Q ss_pred             cCCchhHHHHHHHHHHHHHHHHHhhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHh
Q 011277          202 EIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEEL  281 (489)
Q Consensus       202 ~~~~~wr~~f~~~~i~~~~~~~~~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (489)
                      +..+ ||+.|++..+..++..+.....||+|++...+++.                              +....+.++.
T Consensus       165 ~~~~-w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------~~~~~~~~~~  213 (394)
T TIGR00883       165 LEWG-WRIPFLVSAVLVLIGLYLRRNLEETPVFEKAQEKH------------------------------KKKRGPIRET  213 (394)
T ss_pred             hccc-hHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHhcc------------------------------ccccCCHHHH
Confidence            2234 79999876655555444445567765431110000                              0001123333


Q ss_pred             hhccchhHHHHHHHHHHHHhhhhHHHHHHhHHHHH-HhcCCC---cchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHh
Q 011277          282 LYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVF-KSAGLS---SGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWS  357 (489)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~  357 (489)
                      +++++.+ ............. .......+.+..+ +..+.+   .+.......++..++.++.+++.||+|||+.+...
T Consensus       214 ~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~  291 (394)
T TIGR00883       214 LTKHRKP-FLLGLGLVIATTT-TFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIF  291 (394)
T ss_pred             HHhchHH-HHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHH
Confidence            4333311 1111111111111 1112222333333 333433   33455566788889999999999999999976644


Q ss_pred             hHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHH-HHHHHHHHH
Q 011277          358 FFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSV-HWVINFFVG  436 (489)
Q Consensus       358 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~-~~~~~~~~~  436 (489)
                      .....+...........  ...  .+......++.....+. ..+....+..|.+|++.|+++.++...+ ..+++.++|
T Consensus       292 ~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p  366 (394)
T TIGR00883       292 TVLAALLAVPLLMALLD--SGS--FTLFFFLVLGLALIGGM-YTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAP  366 (394)
T ss_pred             HHHHHHHHHHHHHHHhc--CCc--hHHHHHHHHHHHHHHHH-HhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHH
Confidence            43333222111111110  111  11111222222332222 2334556889999999999999986555 456777889


Q ss_pred             HHHHHHHHHhC-Cchhh
Q 011277          437 LLFLRLLEQLG-PQLLY  452 (489)
Q Consensus       437 ~~~~~l~~~~g-~~~~~  452 (489)
                      .+.+.+.+..| +...+
T Consensus       367 ~~~g~l~~~~g~~~~~~  383 (394)
T TIGR00883       367 YIAAALVAMTGDWYAIG  383 (394)
T ss_pred             HHHHHHHHHcCcchhHH
Confidence            88888888877 44333

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK03699 putative transporter; Provisional

Probab=99.96  E-value=1.9e-26  Score=227.89  Aligned_cols=361  Identities=14%  Similarity=0.114  Sum_probs=236.4

Q ss_pred             HHHHHHHHhhhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHH
Q 011277           53 VLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGA  132 (489)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~  132 (489)
                      ....+++.++.+.+....+..+|.+.+++|++.+  +.++..+.+.+++.+++++.|+++||+|||+++..+.+++.++.
T Consensus         9 ~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~--~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~   86 (394)
T PRK03699          9 TWISFLSYALTGALVIVTGMVMGPIAEYFNLPVS--SMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILAV   86 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            3455667777888877888889999999988644  56889999999999999999999999999999999999999999


Q ss_pred             HHHhhcchHHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhccc-ccCCchhHHHH
Q 011277          133 SISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPV-KEIAGWWRICF  211 (489)
Q Consensus       133 ~l~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l-~~~~~~wr~~f  211 (489)
                      ++.+++++++.+++.|+++|++.|...+....++.|++|+++|++..+.......+|..+++.+...+ .+..+ ||+.|
T Consensus        87 ~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~g-w~~~f  165 (394)
T PRK03699         87 AGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIE-WYWVY  165 (394)
T ss_pred             HHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-HHHHH
Confidence            99999999999999999999999988888888999999999999999888777777766666665443 33345 79999


Q ss_pred             HHHHHHHHHHHHHhhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHH
Q 011277          212 WVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVF  291 (489)
Q Consensus       212 ~~~~i~~~~~~~~~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (489)
                      ++..+..++..+..++ .+.|+.   + +.++         ++             ++..  .+..     .++..+...
T Consensus       166 ~~~~~~~~~~~~~~~~-~~~p~~---~-~~~~---------~~-------------~~~~--~~~~-----~~~~~~~~~  211 (394)
T PRK03699        166 ACIGLVYVAIFILTLF-SEFPAL---G-KHAP---------KA-------------DKPV--AKEK-----WGIGVLFLA  211 (394)
T ss_pred             HHHHHHHHHHHHHHHh-cCCccc---c-ccCc---------cc-------------cCcc--cccc-----CChHHHHHH
Confidence            8765555444333222 222210   0 0000         00             0000  0000     011222222


Q ss_pred             HHHHHHHHHhhhhHHHHHHhHHHHH-HhcCCC---cchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHH
Q 011277          292 IGSTLFALQQLSGINAIFYFSSSVF-KSAGLS---SGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAI  367 (489)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~  367 (489)
                      ...++....    ......+.+..+ +..+.+   .+.......++..+|.++.++++||++||+.+........+...+
T Consensus       212 ~~~~~~~~~----~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~  287 (394)
T PRK03699        212 IAALLYILA----QLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYL  287 (394)
T ss_pred             HHHHHHHHH----HHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHH
Confidence            222221111    122233444444 334554   344555666788999999999999999998877655444443322


Q ss_pred             HHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 011277          368 QVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLG  447 (489)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g  447 (489)
                      ....     .+...  ..+ ..+..+.... +..|....+..|..| +.+++..+......++++.++|.+.+.+.+..|
T Consensus       288 ~~~~-----~~~~~--~~~-~~~~~G~~~~-~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g  357 (394)
T PRK03699        288 FVNT-----DDPSH--LLY-AILGLGFFSS-AIYTTIITLGSQQTK-VASPKLVNFILTCGTIGTMLTFVVTSPIVAHFG  357 (394)
T ss_pred             HHHc-----CCchH--HHH-HHHHHHHHHH-HHHHHHHHHHHHHcc-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhC
Confidence            2111     11111  111 1112222111 122333345667666 456788889888999999999999999988888


Q ss_pred             CchhhHHHHHHHHHHHH
Q 011277          448 PQLLYSIFGTFCLMAVA  464 (489)
Q Consensus       448 ~~~~~~~~~~~~~~~~~  464 (489)
                      +...+.+.+.+++++.+
T Consensus       358 ~~~~~~~~~~~~~~~~~  374 (394)
T PRK03699        358 LQAALLTANGLYAVVFV  374 (394)
T ss_pred             chhhhhhhHHHHHHHHH
Confidence            87777666666555543

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.96  E-value=9.9e-27  Score=229.40  Aligned_cols=344  Identities=19%  Similarity=0.198  Sum_probs=230.2

Q ss_pred             HHHHHHHhhhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHH
Q 011277           54 LVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGAS  133 (489)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~  133 (489)
                      ..+....+....+.+...+.+|.+.+|+|.+.+  +.++..+.+.++..+++++.|+++||+|||+++..+.++..++.+
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~--~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~   85 (385)
T TIGR00710         8 LLLGCLSILGPLGIDMYLPAFPEIAADLSTPAS--IVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSL   85 (385)
T ss_pred             HHHHHHHHHHHHHHHHhcccHHHHHHHhCCCHH--HHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHH
Confidence            333444455566777788889999999998644  568999999999999999999999999999999999999999999


Q ss_pred             HHhhcchHHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHH
Q 011277          134 ISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWV  213 (489)
Q Consensus       134 l~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~  213 (489)
                      +.+.+++++.+.+.|++.|++.+...+....++.|++|+++|++..++.+....+|..+++.++..+.+..+ ||+.|++
T Consensus        86 ~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~-~~~~~~~  164 (385)
T TIGR00710        86 GLALSNNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLS-WHAIFAF  164 (385)
T ss_pred             HHHHHccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-HHHHHHH
Confidence            999999999999999999999999988999999999999999999999999999999888888877766556 6998887


Q ss_pred             HHHHHHHHHH-HhhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHHH
Q 011277          214 SIVPAAILCL-AMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFI  292 (489)
Q Consensus       214 ~~i~~~~~~~-~~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (489)
                      ..+..++..+ ..+..||+++.    ++.++.+             +.              ...+++.+++++++....
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~-------------~~--------------~~~~~~~~~~~~~~~~~~  213 (385)
T TIGR00710       165 LSLAGILLSALIFFILPETLPY----EARIQIS-------------TY--------------FETFLLLLKSKMFWGYAL  213 (385)
T ss_pred             HHHHHHHHHHHHHHhCCCCCCC----cccCCHH-------------HH--------------HHHHHHHHcCchhHHHHH
Confidence            5554444333 33456665421    0000000             00              011223344444443332


Q ss_pred             HHHHHHHHhhhhHHHHHHhHHHHH-HhcCCC---cchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHH
Q 011277          293 GSTLFALQQLSGINAIFYFSSSVF-KSAGLS---SGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQ  368 (489)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~  368 (489)
                      ........    ......+.+..+ +..+.+   .+.......++.+++.++.+++.||+++|+.+..+.....++..+.
T Consensus       214 ~~~~~~~~----~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~  289 (385)
T TIGR00710       214 IYGASFGG----FFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLL  289 (385)
T ss_pred             HHHHHHHH----HHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence            22111111    111122223222 234443   3455666778889999999999999999998877766666555444


Q ss_pred             HHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHH
Q 011277          369 VAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFL  440 (489)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~  440 (489)
                      .......  .. ............+.+.+. ..+....+..|.+| +.|+++.++.+...+.++.+.+....
T Consensus       290 ~~~~~~~--~~-~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~  356 (385)
T TIGR00710       290 EITAILG--LG-SWAMIIGPMMFVGIGNSM-ISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVS  356 (385)
T ss_pred             HHHHHhc--cc-hHHHHHHHHHHHHHHHHH-HHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            3322111  01 111111112222222221 22344456678877 67999999999888876666666655

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.96  E-value=2.3e-26  Score=227.28  Aligned_cols=341  Identities=18%  Similarity=0.191  Sum_probs=216.7

Q ss_pred             hccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhcchHHH
Q 011277           64 GYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIG  143 (489)
Q Consensus        64 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~~  143 (489)
                      ....+...+++|.+.+++|.+.+  +.++..+.+.++..+++++.|+++||+|||+.+..+.+++.++..++..+++++.
T Consensus        16 ~~~~~~~~~~lp~~~~~~~~s~~--~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~~~~   93 (392)
T PRK10473         16 PAGIDMYLVGLPRIAADLNASEA--QLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETSSL   93 (392)
T ss_pred             HHHHHHHhhhHHHHHHHhCCCHH--HHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCcHHH
Confidence            33344555789999999987644  5678999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHHHH
Q 011277          144 MLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCL  223 (489)
Q Consensus       144 l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~i~~~~~~~  223 (489)
                      +++.|+++|++.+...+....++.|.+|+++|++..++......+|..+++.++..+.+..+ ||+.|++..+..++..+
T Consensus        94 ~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g-~~~~~~~~~~~~~i~~~  172 (392)
T PRK10473         94 FLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFP-WQSLFYTMAAMGILVLL  172 (392)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcC-hHHHHHHHHHHHHHHHH
Confidence            99999999999998888888999999999999999999999888888888888776655556 69988876544444333


Q ss_pred             -HhhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHHHHHHHHHHHhh
Q 011277          224 -AMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQL  302 (489)
Q Consensus       224 -~~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (489)
                       .....||++..   + +.++ .+                           .....++.++++++........+......
T Consensus       173 ~~~~~~~~~~~~---~-~~~~-~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (392)
T PRK10473        173 LSLFILKETRPA---R-APAA-SS---------------------------KPRENSESLLNRFFLSRLVITTLSVTVIL  220 (392)
T ss_pred             HHHHHcCCCCCc---c-cCCc-cc---------------------------hHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence             34556776320   0 0000 00                           00011122333333322221111111111


Q ss_pred             hhHHHHHHhHHH-HHHhcCCCc---chHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCC
Q 011277          303 SGINAIFYFSSS-VFKSAGLSS---GLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPG  378 (489)
Q Consensus       303 ~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~  378 (489)
                          ....+.+. ..+..+.+.   +......+++.+++.++.+++.||+|||+.+..+.....++..........    
T Consensus       221 ----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~----  292 (392)
T PRK10473        221 ----TFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSPSH----  292 (392)
T ss_pred             ----HHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence                11111222 223345443   345566778888999999999999999998887776665555444332211    


Q ss_pred             chhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHH
Q 011277          379 SASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGT  457 (489)
Q Consensus       379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~  457 (489)
                        ..  ..........+++.+.+.   ....++.|.+.|+   +...+...++..+++.+.+.+.+..|......+.+.
T Consensus       293 --~~--~~~~~~l~~~g~~~~~~~---~~~~~~~~~~~~~---g~~~~~~~~~~~~g~~~~~~l~~~~g~~~~~~~~~~  361 (392)
T PRK10473        293 --AV--SLFGITLICAGFSVGFGV---AMSQALGPFSLRA---GVASSTLGIAQVCGSSLWIWLAAVLGISAWNMLIGI  361 (392)
T ss_pred             --HH--HHHHHHHHHHHHHHHhHH---HHHHHhccCcccc---cHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHH
Confidence              01  111112222222222211   2334555655553   333444455666667666677777776543334443

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.96  E-value=2.8e-27  Score=239.06  Aligned_cols=360  Identities=15%  Similarity=0.126  Sum_probs=224.8

Q ss_pred             hcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhc--chHHHHHHHHHHHhhhccc
Q 011277           80 DLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATT--RNLIGMLLGRFVVGTGMGL  157 (489)
Q Consensus        80 ~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~--~~~~~l~~~R~l~G~g~g~  157 (489)
                      |++++  ..+.|++.+.+.+++.+++++.|+++||+|||+++..+.++++++.+++..+  .++..+++.|+++|++.+.
T Consensus        70 ~~~~s--~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~  147 (465)
T TIGR00894        70 NFKWS--GALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGS  147 (465)
T ss_pred             CCCCC--HHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhccc
Confidence            55554  4567899999999999999999999999999999999999999988887543  5688899999999999999


Q ss_pred             ccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccC-CchhHHHHHHHHHHHHHHHHHh-hhccCChHHH
Q 011277          158 GPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEI-AGWWRICFWVSIVPAAILCLAM-VFCAESPHWL  235 (489)
Q Consensus       158 ~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~-~~~wr~~f~~~~i~~~~~~~~~-~~~~Esp~~l  235 (489)
                      ..+....++.|++|+++|+++.++...+..+|..++++++..+.+. .+ ||+.|++.++..++..+.. .+.+|+|+..
T Consensus       148 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~g-w~~~f~i~~~~~~~~~~~~~~~~~~~p~~~  226 (465)
T TIGR00894       148 VSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGG-WPMIFYVFGIVGCAWSLLWFVFPADDPSIH  226 (465)
T ss_pred             chhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-CCeehhhhhHHHHHHHHHHHHHhcCCcccC
Confidence            9999999999999999999999999999999998888887776665 36 6999988766665554443 4456666421


Q ss_pred             HhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHHHHHHHHHHHhhhhHHHHHHhHHHH
Q 011277          236 YKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSV  315 (489)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (489)
                        +...++.++..++.            . +.++.+.....++++.++++..+......+....    ..+....|.|.+
T Consensus       227 --~~~~~~~~~~i~~~------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~lp~~  287 (465)
T TIGR00894       227 --PCISKFEKKYINSS------------L-QGQKGSTRQSLPIKAIPKSLPVWAIWFAIFGHFW----LYTILPTYLPTF  287 (465)
T ss_pred             --CCCCHHHHHHHHhh------------c-ccccCCCCCCCCHHHHhcCHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence              11111111111100            0 0001111122346667766665555443333222    222333444444


Q ss_pred             HHh-cCCC---cchHHHHHHHHHHHHHHHHHHHhhhcCCchhHH---HhhHHHHHHH---HHHHHHhhccCCCchhhHHH
Q 011277          316 FKS-AGLS---SGLANVFVGIANLLGSVVAMVLMDKLGRKALLQ---WSFFSMAVSM---AIQVAASSSYIPGSASLYLS  385 (489)
Q Consensus       316 ~~~-~~~~---~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~---~~~~~~~i~~---~~~~~~~~~~~~~~~~~~~~  385 (489)
                      +++ .+.+   .++......++..++.+++|+++||+++|+...   ...+...++.   ........ .....  .+..
T Consensus       288 l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~  364 (465)
T TIGR00894       288 ISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALP-YLSAA--FYLT  364 (465)
T ss_pred             HHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHH-HcCCc--hHHH
Confidence            432 3443   455666677888999999999999986542110   0001111111   11111111 11111  1111


Q ss_pred             HHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh--C-CchhhHHHHHHHHHH
Q 011277          386 VGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQL--G-PQLLYSIFGTFCLMA  462 (489)
Q Consensus       386 ~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--g-~~~~~~~~~~~~~~~  462 (489)
                      +..+.+...... +..+.......|..| +.++...++.+..+.+++.++|.+.+.+.+..  + +...|.+.+++++++
T Consensus       365 ~~~~~l~~~~~~-~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~  442 (465)
T TIGR00894       365 IIILTLANAVSS-GPLAGVLINSLDLAP-RFLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILC  442 (465)
T ss_pred             HHHHHHHHHHhh-hhhhhhhhchhhcCh-hHHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHH
Confidence            111221111111 112233334557766 58999999999999999999998887665532  2 455667777666666


Q ss_pred             HHHH
Q 011277          463 VAFV  466 (489)
Q Consensus       463 ~~~~  466 (489)
                      .++.
T Consensus       443 ~i~~  446 (465)
T TIGR00894       443 VIFY  446 (465)
T ss_pred             HHHe
Confidence            5543

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=99.95  E-value=2.4e-28  Score=229.40  Aligned_cols=370  Identities=18%  Similarity=0.169  Sum_probs=237.4

Q ss_pred             cchHHHHHHHHHHHHhhhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhH
Q 011277           46 WKLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCA  125 (489)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~  125 (489)
                      ++.....++++++.+.+.-.|-..+....+.+++.+|++++  ..|++.+.+.+.+.+.+++.|+|+|||.||+++..+.
T Consensus        28 ~~~~~~~l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s--~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~  105 (493)
T KOG1330|consen   28 MKSPTLTLVILCLVNLMNYADRYTIAGVLKEVQTYFNISDS--ELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGI  105 (493)
T ss_pred             cccchHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCch--hccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHH
Confidence            34445567888888888888877777788999999998765  4589999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhcchHHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCc
Q 011277          126 LPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAG  205 (489)
Q Consensus       126 ~~~~i~~~l~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~  205 (489)
                      .+++++.++++++..|++++++|.+.|+|.+...++.+.+++|.+|..+|+++.++++++..+|..+|.+.|..+.+..+
T Consensus       106 ~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~  185 (493)
T KOG1330|consen  106 FIWTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTF  185 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHH-hhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhc
Q 011277          206 WWRICFWVSIVPAAILCLA-MVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYG  284 (489)
Q Consensus       206 ~wr~~f~~~~i~~~~~~~~-~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (489)
                      ||||.|+..++..++..++ .++++|.+|     +..+|..++.    +             ..+.........+.+.+.
T Consensus       186 ~Wr~af~~~avl~vi~~~L~~~f~~eP~r-----ga~~~~~~~~----~-------------~~~~~ts~~kDl~~l~~~  243 (493)
T KOG1330|consen  186 WWRWAFRGSAVLGVIVGLLVFLFVREPER-----GARDEVDGEN----K-------------MVKPFTSVWKDLKVLAKI  243 (493)
T ss_pred             ceEEEEEeehHHHHHHHHHHHhhccCccc-----ccccccccCC----c-------------CCCCccchHHHHHHHHcc
Confidence            9999999877776666555 445566432     1111111000    0             000000111112222232


Q ss_pred             cchhHHHHHHHHHH--HHhhhhHHHHHHhHHHHHHhcCCC--cc-hHHHHHHHHHHHHHHHHHHHhhhcCCc----hhHH
Q 011277          285 RHFRVVFIGSTLFA--LQQLSGINAIFYFSSSVFKSAGLS--SG-LANVFVGIANLLGSVVAMVLMDKLGRK----ALLQ  355 (489)
Q Consensus       285 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~i~~~~g~~~~g~l~dr~grr----~~~~  355 (489)
                      +.++...+..+...  ...+..  ..+-+.+..+...+.+  .+ .......++..+|.+++|.++||+.|+    ....
T Consensus       244 ~v~v~~sl~~~a~~fv~Gs~sw--w~p~~~~~~~~~~~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~  321 (493)
T KOG1330|consen  244 KVFVLSSLGIIAAQFVIGSLSW--WAPAFIYYSYELIGFDHNATLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLR  321 (493)
T ss_pred             CceeeehHHHHHHHHhccccch--hhhhHHHHHHHHhCCccccchhhhhHHHhhchhhheehHHHHHHHHHhcccccchh
Confidence            33333322222211  111111  1111222222223222  23 344555677888889999999985331    1111


Q ss_pred             Hh----hHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHH
Q 011277          356 WS----FFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVI  431 (489)
Q Consensus       356 ~~----~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~  431 (489)
                      +.    ......+...+.....   ......+..+...++.......++.+. .-...|+.|+++|+++.++...+..+.
T Consensus       322 ~~q~~~~~g~~~s~~~L~~~~~---~~~~s~~~~~il~~~g~~~~~~~~a~n-~~i~l~vV~p~~Rt~a~a~~~~~~h~f  397 (493)
T KOG1330|consen  322 ASQLSAALGAPLSIPFLFLFPA---FTSSSMIFGLILFLVGETISWFNWATN-NPIFLEVVPPSRRTTAYALDTVFEHIF  397 (493)
T ss_pred             HHHHHHhhhhhHHHHHHHHHHh---hhhHHHHHHHHHHHHHHHHHhcccccc-cceeeEecCcccccHHHHHHHHHHHHh
Confidence            11    1111222111111111   111223332222222112222233333 236789999999999999998776554


Q ss_pred             HH-HHHHHHHHHHHH
Q 011277          432 NF-FVGLLFLRLLEQ  445 (489)
Q Consensus       432 ~~-~~~~~~~~l~~~  445 (489)
                      +- ..|.+.+.+.+.
T Consensus       398 gd~~~p~ivGilsd~  412 (493)
T KOG1330|consen  398 GDAASPYIVGILSDK  412 (493)
T ss_pred             ccCCCcceehhHHHH
Confidence            43 344455555554

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.95  E-value=4.1e-26  Score=221.67  Aligned_cols=340  Identities=27%  Similarity=0.391  Sum_probs=252.9

Q ss_pred             HHHHHhhhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHH
Q 011277           56 ATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASIS  135 (489)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~  135 (489)
                      +.+..+..+.+....++..|.+.+++|.+.  .+.++..+...++..+++++.|+++||+|||+.+..+.++..++.++.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~   81 (352)
T cd06174           4 LFLGFFLSGLDRGLLSPALPLLAEDLGLSA--SQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLL   81 (352)
T ss_pred             HHHHHHHHHHhhhhhHhhHHHHHHHcCCCH--HHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHH
Confidence            344556667777778888899999987654  456889999999999999999999999999999999999999999999


Q ss_pred             hhcchHHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHH
Q 011277          136 ATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSI  215 (489)
Q Consensus       136 ~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~  215 (489)
                      ..+++++.+.+.|++.|++.+...+....++.|++|+++|++..++......+|..+++.++..+.+..+ ||+.+++..
T Consensus        82 ~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~  160 (352)
T cd06174          82 AFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLG-WRWLFLILA  160 (352)
T ss_pred             HHhccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999998887766656 699988765


Q ss_pred             HHHHHHHHHhhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHHHHHH
Q 011277          216 VPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGST  295 (489)
Q Consensus       216 i~~~~~~~~~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (489)
                      +..++..+...+.+                                                       +.++.......
T Consensus       161 ~~~~~~~~~~~~~~-------------------------------------------------------~~~~~~~~~~~  185 (352)
T cd06174         161 ILGLLLALLLLFLL-------------------------------------------------------RLLLLLALAFF  185 (352)
T ss_pred             HHHHHHHHHHHHHH-------------------------------------------------------HHHHHHHHHHH
Confidence            55554444333221                                                       00111111111


Q ss_pred             HHHHHhhhhHHHHHHhHHHHHHhc-CCC---cchHHHHHHHHHHHHHHHHHHHhhhcCCch-hHHHhhHHHHHHHHHHHH
Q 011277          296 LFALQQLSGINAIFYFSSSVFKSA-GLS---SGLANVFVGIANLLGSVVAMVLMDKLGRKA-LLQWSFFSMAVSMAIQVA  370 (489)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~i~~~~g~~~~g~l~dr~grr~-~~~~~~~~~~i~~~~~~~  370 (489)
                      +..    ........+.+...++. +.+   .+.......++..++.++.+++.||++||+ .+..+.....++......
T Consensus       186 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  261 (352)
T cd06174         186 LLS----FGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLAL  261 (352)
T ss_pred             HHH----hHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence            111    11122222333333332 333   355667778899999999999999999999 877777766666554432


Q ss_pred             HhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCch
Q 011277          371 ASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQL  450 (489)
Q Consensus       371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~  450 (489)
                      ..     .   .+.......+...+.+ ...+....+..|..|++.|++..++.+...+++..+++.+.+.+.+..++..
T Consensus       262 ~~-----~---~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~  332 (352)
T cd06174         262 AP-----S---LALLLVALLLLGFGLG-FAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGG  332 (352)
T ss_pred             hc-----c---HHHHHHHHHHHHHHHh-ccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcch
Confidence            21     1   1111222222223222 2356677789999999999999999999999999999999988888888888


Q ss_pred             hhHHHHHHHHHHHHHH
Q 011277          451 LYSIFGTFCLMAVAFV  466 (489)
Q Consensus       451 ~~~~~~~~~~~~~~~~  466 (489)
                      .+.+.+++.++..+..
T Consensus       333 ~~~~~~~~~~i~~i~~  348 (352)
T cd06174         333 VFLILAALALLAALLL  348 (352)
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            8888888887776654

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.95  E-value=5.5e-26  Score=225.93  Aligned_cols=374  Identities=17%  Similarity=0.122  Sum_probs=241.9

Q ss_pred             HHHHHHHhhhhccceeeccchhhhhhhcCCCCchh---HHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHH
Q 011277           54 LVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTL---AEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMII  130 (489)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~---~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i  130 (489)
                      ....++.++.+...+...+.+|.+.+|+|.+..+.   ..+++.+.+.++..+++++.|+++||+|||+++..+.++..+
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~   96 (408)
T PRK09874         17 TVAWLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGI   96 (408)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHH
Confidence            34455667777777778888999999999875542   247888899999999999999999999999999999999999


Q ss_pred             HHHHHhhcchHHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHH
Q 011277          131 GASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRIC  210 (489)
Q Consensus       131 ~~~l~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~  210 (489)
                      +..+.+.+++++.+++.|++.|++.+ ..+....++.|.+|+++|+++.+++.....+|..+++.++..+.+..+ ||+.
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-~~~~  174 (408)
T PRK09874         97 VMVLMGLAQNIWQFLILRALLGLLGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYG-LRPV  174 (408)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-HHHH
Confidence            99999999999999999999999865 456666788999999999999999999999998888888877766556 6998


Q ss_pred             HHHHHHHHHHHHH-HhhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhH
Q 011277          211 FWVSIVPAAILCL-AMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRV  289 (489)
Q Consensus       211 f~~~~i~~~~~~~-~~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (489)
                      |++..+..++..+ ...+.+|.++.   ..+.++  ..             .++              ..+.+++++...
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~--~~-------------~~~--------------~~~~~~~~~~~~  222 (408)
T PRK09874        175 FFITASVLFLCFLVTLFCIRENFQP---VSKKEM--LH-------------MRE--------------VVTSLKNPKLVL  222 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCccc---ccchhh--hH-------------HHH--------------HHHhCcCCchHH
Confidence            8876554444333 33445554311   000000  00             000              011122222222


Q ss_pred             HH-HHHHHHHHHhhhhHHHHHHhHHHHHHhcCC---CcchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHH
Q 011277          290 VF-IGSTLFALQQLSGINAIFYFSSSVFKSAGL---SSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSM  365 (489)
Q Consensus       290 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~  365 (489)
                      .. ...................|..+..+....   ..+......+++.+++.+..++++||+|||+.+..+.....+..
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~  302 (408)
T PRK09874        223 SLFVTTLIIQVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLL  302 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHH
Confidence            11 111111110000001111121111111110   01223334556777888889999999999998877665544433


Q ss_pred             HHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011277          366 AIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQ  445 (489)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~  445 (489)
                      +......     . .  +......++.+++.+. ..|....+..+..|++.|++..++...+..++..++|.+.+.+.+.
T Consensus       303 ~~~~~~~-----~-~--~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~  373 (408)
T PRK09874        303 IPMSFVQ-----T-P--LQLGILRFLLGAADGA-LLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISAN  373 (408)
T ss_pred             HHHHHhc-----c-H--HHHHHHHHHHHhhhHh-hHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhh
Confidence            3322111     1 1  1111111222222221 2233344566778889999999999999999999999988888888


Q ss_pred             hCCchhhHHHHHHHHHHHHHHHhhc
Q 011277          446 LGPQLLYSIFGTFCLMAVAFVKRNV  470 (489)
Q Consensus       446 ~g~~~~~~~~~~~~~~~~~~~~~~~  470 (489)
                      .|+...|.+.+++.+++.++.++..
T Consensus       374 ~g~~~~f~~~~~~~l~~~~~~~~~~  398 (408)
T PRK09874        374 YGFRAVFLVTAGVVLFNAVYSWNSL  398 (408)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHH
Confidence            8888888888888777776655443

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.95  E-value=7.7e-26  Score=222.27  Aligned_cols=358  Identities=16%  Similarity=0.129  Sum_probs=228.0

Q ss_pred             HHhhhhccceeeccchhh-hhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHH-hHHHHHHHHHHHh
Q 011277           59 SSFLFGYHLGVVNEPLES-ISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQL-CALPMIIGASISA  136 (489)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~-~~~~~~i~~~l~~  136 (489)
                      ..++.+...+...+.+|. +.+++|.+.  .+.|++.+.+.++..+.+++.|+++||+|||+.++. +.++..++.++++
T Consensus         5 ~~~~~~~~~~~~~~~l~~~l~~~~g~s~--~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~   82 (375)
T TIGR00899         5 VAFLTGIAGALQFPTLSLFLSEEVRARP--AMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFA   82 (375)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHcccCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHH
Confidence            345566666777777776 457888764  456899999999889999999999999999887654 5566667778889


Q ss_pred             hcchHHHHHHHHHHHhhhcccccccccccccccCCcccchhh--hhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHH
Q 011277          137 TTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTY--GAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVS  214 (489)
Q Consensus       137 ~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~--~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~  214 (489)
                      .++|++.+++.|+++|.+.+...+....+..|+.|+++|++.  .+.......+|..+++.++..+.+..+ ||+.|++.
T Consensus        83 ~~~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~-~~~~f~~~  161 (375)
T TIGR00899        83 WNRNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFG-FTVMFLTA  161 (375)
T ss_pred             hcchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcc-cHHHHHHH
Confidence            999999999999999988777777777788899888777754  567777778888888888777766566 69999987


Q ss_pred             HHHHHHHHHH-hhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHHHH
Q 011277          215 IVPAAILCLA-MVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIG  293 (489)
Q Consensus       215 ~i~~~~~~~~-~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (489)
                      ++..++..+. .+++||+|+..    +.++.         .                     .+.++.+++++++.....
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~---------~---------------------~~~~~~~~~~~~~~~~~~  207 (375)
T TIGR00899       162 ALAFVLCGVLVWLFLPSYPRGA----PGALT---------R---------------------LEVRGLLASRDTRLLFVA  207 (375)
T ss_pred             HHHHHHHHHHHHHhCCCcccCc----ccccC---------c---------------------chhhhhhcCcchHHHHHH
Confidence            6655544333 44578876321    00000         0                     001112333444433332


Q ss_pred             HHHHHHHhhhhHHHHHHhHHHHHHhcCCCc---chHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHH
Q 011277          294 STLFALQQLSGINAIFYFSSSVFKSAGLSS---GLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVA  370 (489)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~  370 (489)
                      ..+............+.   ...+..+.+.   +.......+...++.++.+++.||+|||+.+..+.....+.......
T Consensus       208 ~~~~~~~~~~~~~~~~~---~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~  284 (375)
T TIGR00899       208 CTLMWGCNILYIINMPL---LIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAA  284 (375)
T ss_pred             HHHHHHHHHHHHhhhHH---HHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHH
Confidence            22221111111111111   2223334433   33333344456677888999999999999877665443333222211


Q ss_pred             HhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCch
Q 011277          371 ASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQL  450 (489)
Q Consensus       371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~  450 (489)
                      ..     +   .+.......+...+.+. ..+....+..|..|++ |+++.++.+...+++..++|.+.+.+.+..|+..
T Consensus       285 ~~-----~---~~~~~~~~~~~g~~~g~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~  354 (375)
T TIGR00899       285 DN-----S---LWALLMLQLLNAIFIGI-LAGIGMLYFQDLMPGR-AGAATTLYTNTGRVGWIIAGSVGGILAERWSYHA  354 (375)
T ss_pred             HH-----H---HHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCcch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchh
Confidence            11     1   11111111222222221 2244455778988864 6699999999999999999999888888888888


Q ss_pred             hhHHHHHHHHHHHHHH
Q 011277          451 LYSIFGTFCLMAVAFV  466 (489)
Q Consensus       451 ~~~~~~~~~~~~~~~~  466 (489)
                      .+.+.+++++++.+..
T Consensus       355 ~~~~~~~~~~~~~~~~  370 (375)
T TIGR00899       355 VYWFAIVMLIVALFCL  370 (375)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            8877777766665544

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.95  E-value=1.1e-25  Score=221.93  Aligned_cols=365  Identities=14%  Similarity=0.076  Sum_probs=230.9

Q ss_pred             HHHHHhhhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHH
Q 011277           56 ATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASIS  135 (489)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~  135 (489)
                      +.++.++.....+......+.+.+|++.+.  .+.+++.+.+.+++.+.+++.|+++||+|||++++.+.++++++++++
T Consensus         8 l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~   85 (393)
T PRK11195          8 IMAAQFFSALADNALLFAAIALLKELHYPD--WSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLM   85 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCcH--HHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHH
Confidence            344555555544444455556678887653  356899999999999999999999999999999999999999998887


Q ss_pred             hhcchHHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHH
Q 011277          136 ATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSI  215 (489)
Q Consensus       136 ~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~  215 (489)
                      +++.+.   ++.|+++|++.+...|...+++.|++|+++|+++.++.+....+|..+||.+++.+.+..  |+..+++..
T Consensus        86 ~~~~~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~--~~~~~~i~~  160 (393)
T PRK11195         86 LFGIHP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADPH--AEAALAVCA  160 (393)
T ss_pred             HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence            776664   788999999999999999999999999999999999999999999999999988776532  566666544


Q ss_pred             HHHHHHHHHhhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHHHHHH
Q 011277          216 VPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGST  295 (489)
Q Consensus       216 i~~~~~~~~~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (489)
                      ...++..+....+||+|...  +++.++..+..             ++..          ...+.+++++.++.......
T Consensus       161 ~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~-------------~~~~----------~~~~~l~~~~~~~~~~~~~~  215 (393)
T PRK11195        161 LIYLLAALFNLFIPRLGARR--PGQSWNPIALL-------------RDFF----------HACRVLWRDKLGRFSLAGTT  215 (393)
T ss_pred             HHHHHHHHHHhcCCCCcccc--cccCCCHHHHH-------------HHHH----------HHHHHHHhCchhHHHHHHHH
Confidence            33333344456678875321  10100000000             0000          01223445555544333222


Q ss_pred             HHHHHhhhhHHHHHHhHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhcc
Q 011277          296 LFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSY  375 (489)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~  375 (489)
                      +............+.|.+..++......|......+++.+++++..+++.||.++|+.+..+.. .++........    
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~-~~~~~~~~~~~----  290 (393)
T PRK11195        216 LFWGAGATLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGIL-MGLVVLLMALQ----  290 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHH-HHHHHHHHHHH----
Confidence            2211111111122233344443333345677788889999999999999999998887766532 22222211111    


Q ss_pred             CCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHH
Q 011277          376 IPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRI-RAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSI  454 (489)
Q Consensus       376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~-r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~  454 (489)
                        .  ..+.......+.+++......|.. ....|..|++. ++++.++.+...+++..++..+.. ..+..|....+.+
T Consensus       291 --~--~~~~~~~~~~~~G~~~g~~~~~~~-~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  364 (393)
T PRK11195        291 --H--SLLPAYPLLILIGALGGFFVVPMN-ALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYS-LLVKLGVPVVAVI  364 (393)
T ss_pred             --h--HHHHHHHHHHHHHHhhhhhhhhHH-HHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHH-HHHHcCCCHHHHH
Confidence              1  111122222223333332233333 34567656554 799999999999998888887665 4467777766666


Q ss_pred             HHHHHHHHH
Q 011277          455 FGTFCLMAV  463 (489)
Q Consensus       455 ~~~~~~~~~  463 (489)
                      .+...+...
T Consensus       365 ~~~~~~~~~  373 (393)
T PRK11195        365 VGFGLLVAL  373 (393)
T ss_pred             HHHHHHHHH
Confidence            544443333

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.95  E-value=3.7e-25  Score=216.68  Aligned_cols=351  Identities=16%  Similarity=0.115  Sum_probs=216.9

Q ss_pred             ceeeccchhhhhh-hcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhc-----ch
Q 011277           67 LGVVNEPLESISL-DLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATT-----RN  140 (489)
Q Consensus        67 ~~~~~~~~~~i~~-~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~-----~~  140 (489)
                      -...++..+.+.+ |+|++.+  +.+++.+++.+++.++.++.|++.||+|.|+++..+.++.++.+++.+++     ++
T Consensus        50 w~~~~~l~~~~~~~~~~ls~~--q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~s  127 (462)
T PRK15034         50 WMLFSAVTVNLNKIGFNFTTD--QLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNPNTP  127 (462)
T ss_pred             HHHHHHHHHHhhhhhcCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHcccCCC
Confidence            3445555666655 7888754  56899999999999999999999999999999999999999999999876     89


Q ss_pred             HHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHH----HHHHHhh-ccccc------------C
Q 011277          141 LIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGL----MGSLLIG-IPVKE------------I  203 (489)
Q Consensus       141 ~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~----~~g~~~~-~~l~~------------~  203 (489)
                      ++.+++.|++.|++ |..++.....+++++|+++||++.++......+|.    .++|.+. ..+..            .
T Consensus       128 ~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~  206 (462)
T PRK15034        128 FGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGS  206 (462)
T ss_pred             HHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccc
Confidence            99999999999998 66788888999999999999999999964444444    3333321 11111            0


Q ss_pred             CchhHHHHHHHHHHHHHHHHHhhhc-cCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhh
Q 011277          204 AGWWRICFWVSIVPAAILCLAMVFC-AESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELL  282 (489)
Q Consensus       204 ~~~wr~~f~~~~i~~~~~~~~~~~~-~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (489)
                      .-|||...++-.+..++..++.++. ++.|.     .+.                                ......+.+
T Consensus       207 ~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~-----~~~--------------------------------~~~~~~~vl  249 (462)
T PRK15034        207 VMSLANAAWIWVPLLAIATIAAWSGMNDIAS-----SRA--------------------------------SIADQLPVL  249 (462)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhCCCccc-----ccc--------------------------------CHHHHHHHh
Confidence            1236777766544444444343332 22211     000                                001123345


Q ss_pred             hccchhHHHHHHHHHHHHhhhhHHHHHHhHHHHHHh-cC-CCcchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHH
Q 011277          283 YGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKS-AG-LSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFS  360 (489)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~  360 (489)
                      ++++.+......++    .+..+....++.|.+.+. .+ ...........+...+..+++|+++||+|+|+++.+++..
T Consensus       250 k~~~~Wllslly~~----tFG~fvg~s~~lp~~~~~~~~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~  325 (462)
T PRK15034        250 QRLHLWLLSLLYLA----TFGSFIGFSAGFAMLAKTQFPDVNILRLAFFGPFIGAIARSVGGAISDKFGGVRVTLINFIF  325 (462)
T ss_pred             CCCchhHHHHHHHH----HHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHH
Confidence            55555544433222    222222233333333322 11 1111122333456667778999999999999999888876


Q ss_pred             HHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCc---------------------hhhhh
Q 011277          361 MAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPS---------------------RIRAK  419 (489)
Q Consensus       361 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~---------------------~~r~~  419 (489)
                      +.++..........  ......+.....++...+..++|.+.+. -+++..||+                     +.-+.
T Consensus       326 ~~i~~~~~~l~lp~--~~~~~~~~~~~~~~~l~~~~G~gngsvf-k~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~  402 (462)
T PRK15034        326 MAIFSALLFLTLPG--TGSGNFIAFYAVFMGLFLTAGLGSGSTF-QMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAA  402 (462)
T ss_pred             HHHHHHHHHHHhcc--ccccHHHHHHHHHHHHHHHhcccchHHH-HhhHHHHhhhhhhcccccccchhHHhhHHHHHHHH
Confidence            66655433222211  1111222222222222333444444443 356777774                     15678


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhC-CchhhHHHHHHHHHHHH
Q 011277          420 AMAVCMSVHWVINFFVGLLFLRLLEQLG-PQLLYSIFGTFCLMAVA  464 (489)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~~~~~l~~~~g-~~~~~~~~~~~~~~~~~  464 (489)
                      ..|++..++-+|+++.|..++...+..| +...|.++.+.++++..
T Consensus       403 v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~  448 (462)
T PRK15034        403 ALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVL  448 (462)
T ss_pred             HHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence            8889999999999999988887777655 34455555555544443

>PRK11043 putative transporter; Provisional

Probab=99.95  E-value=1.9e-25  Score=221.41  Aligned_cols=339  Identities=20%  Similarity=0.183  Sum_probs=222.2

Q ss_pred             hhhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhcch
Q 011277           61 FLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRN  140 (489)
Q Consensus        61 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~  140 (489)
                      .......+.+.+.+|.+.+++|.+.+  +.++..+.+.+++.++++++|+++||+|||+++..+.++..++.++++.+++
T Consensus        16 ~~~~~~~~~~~p~~~~i~~~~~~s~~--~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~   93 (401)
T PRK11043         16 MLGFLATDMYLPAFKAIQADLQTSAS--AVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVES   93 (401)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHCCCHH--HHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcC
Confidence            33334556677888999999988644  5689999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHH
Q 011277          141 LIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAI  220 (489)
Q Consensus       141 ~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~i~~~~  220 (489)
                      ++.+++.|+++|++.+...+....++.|++|+++|++..+.......+|..+++.++..+.+..+ ||+.|++..+..++
T Consensus        94 ~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g-~~~~~~~~~~~~~~  172 (401)
T PRK11043         94 AAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFG-WQAIFATLFAITLL  172 (401)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHH
Confidence            99999999999999887777777889999999999988888887788888888888877766666 69998876665555


Q ss_pred             HHHHhhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHHHHHHHHHHH
Q 011277          221 LCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQ  300 (489)
Q Consensus       221 ~~~~~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (489)
                      ..+..++.+|+++    +++.++.                              ..++++.++++.++............
T Consensus       173 ~~~~~~~~~~~~~----~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (401)
T PRK11043        173 LILPTLRLKPSKK----ARKQSQD------------------------------ALTFKQLLKSKTYLGNVLIFAACSAA  218 (401)
T ss_pred             HHHHHHHcCCCCC----ccccchH------------------------------HHHHHHHHcChhHHHHHHHHHHHHHH
Confidence            5555555555432    0000000                              01122333333333222211111111


Q ss_pred             hhhhHHHHHHhHHHHHHhcCCCc---chHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCC
Q 011277          301 QLSGINAIFYFSSSVFKSAGLSS---GLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIP  377 (489)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~  377 (489)
                          ......+.+...++.+.+.   ++......++..+|.++.+++.||+++|+..........++........... .
T Consensus       219 ----~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  293 (401)
T PRK11043        219 ----FFAWLTGSPFILEQMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLS-H  293 (401)
T ss_pred             ----HHHHHHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhc-c
Confidence                1111223344444455543   3444555677788899999999999998876555444444433322221111 1


Q ss_pred             CchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011277          378 GSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQ  445 (489)
Q Consensus       378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~  445 (489)
                      ...  +..+..........+ ...|.......|..| +.|+++.|+.+.++..++..++.+.+.+.+.
T Consensus       294 ~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~  357 (401)
T PRK11043        294 PSL--VPLLIPFCVMAAANG-AIYPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSALIST  357 (401)
T ss_pred             CcH--HHHHHHHHHHHHHHH-HHHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence            111  111111112222222 123333344556666 5799999999999888888888887776653

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.95  E-value=1e-26  Score=226.32  Aligned_cols=346  Identities=21%  Similarity=0.329  Sum_probs=223.8

Q ss_pred             HHHhhhhccceeeccchh-hhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHh
Q 011277           58 LSSFLFGYHLGVVNEPLE-SISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISA  136 (489)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~  136 (489)
                      ++.++...+.+...+.+| .+.+++|.+.+  +.+++.+.+.++..+++++.|+++||+|||+++..+.++.+++..+..
T Consensus         3 l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~--~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~   80 (352)
T PF07690_consen    3 LAFFLSGFGFSIISPALPLYLAEELGLSPS--QIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLA   80 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHH-HHHCCSTTTSH--CHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHccCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhh
Confidence            445566666667788888 88899888755  457899999999999999999999999999999999999999977776


Q ss_pred             hcchHHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHH
Q 011277          137 TTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIV  216 (489)
Q Consensus       137 ~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~i  216 (489)
                      +++|++.+++.|+++|++.+...+....++.|++|+++|++..++...+..+|..+++.++..+.+..+ ||+.|++.++
T Consensus        81 ~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~-~~~~~~~~~~  159 (352)
T PF07690_consen   81 FASNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFG-WRWAFLISAI  159 (352)
T ss_dssp             HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCH-HCCHHHHHHH
T ss_pred             hhhhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccc-cccccccccc
Confidence            768888999999999999999999999999999999999999999999999999999999888876666 6999988766


Q ss_pred             HHHHHHHH-hhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcch-hHHHhhhccchhHHHHHH
Q 011277          217 PAAILCLA-MVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIV-KFEELLYGRHFRVVFIGS  294 (489)
Q Consensus       217 ~~~~~~~~-~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  294 (489)
                      ..++..++ ..+.+|+|+....+++.++. +                       .++.+.. .++...+++.++......
T Consensus       160 ~~~~~~il~~~~~~~~~~~~~~~~~~~~~-~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (352)
T PF07690_consen  160 LSLIAAILFILFLPEPPPPRERESPKESE-S-----------------------KKPKPLKPGFKSLFKNPVLWILLIAF  215 (352)
T ss_dssp             HHHHHHHHHHCCC---STTTT--SSTTTT--------------------------HHHCCCH-CTHHHHHHCCHHHHHHH
T ss_pred             hhhhhhhhHhhhhhhcccccccccccccc-c-----------------------ccccccccccccccccchhhhhhhhh
Confidence            66655443 24444443210000000000 0                       0000001 133344444444222222


Q ss_pred             HHHHHHhhhhHHHHHHhHHHHHHhcC-CCcchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhh
Q 011277          295 TLFALQQLSGINAIFYFSSSVFKSAG-LSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASS  373 (489)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~  373 (489)
                      .+............+.|....++..+ ...+.......+...++.++.+++.||+++|+..........+..........
T Consensus       216 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (352)
T PF07690_consen  216 FLFFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPF  295 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHH
T ss_pred             hHHHHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22211111111112222122222221 12233456666777788999999999999987766555444444333221111


Q ss_pred             ccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHH
Q 011277          374 SYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVG  436 (489)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~  436 (489)
                      .   .  .........++.+++.+. ..+....+..|..|++.|+++.|+.+.+.++++.++|
T Consensus       296 ~---~--~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP  352 (352)
T PF07690_consen  296 S---S--SPVWLIIALFLIGFGFGI-VFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP  352 (352)
T ss_dssp             H---C--HHHHHHHHHHHHHHHHHH-HCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             h---h--hHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence            0   0  111111122223332222 2456667889999999999999999999999888876

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR00897 2A0118 polyol permease family

Probab=99.95  E-value=8.2e-25  Score=216.71  Aligned_cols=364  Identities=13%  Similarity=0.084  Sum_probs=223.8

Q ss_pred             hhhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHh---h
Q 011277           61 FLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISA---T  137 (489)
Q Consensus        61 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~---~  137 (489)
                      +............++.+.+|+|.+.  .+.++..+.+.+++.+++++.|+++||+|||+++..+.+++++++.++.   .
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~g~s~--~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~  100 (402)
T TIGR00897        23 VVFMTGDGLEQGWLSPFLKALGLSP--QQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGL  100 (402)
T ss_pred             HHHHHhhhhHHHhHHHHHHHhCCCH--HHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3333333334445666778888764  4568999999999999999999999999999999999999988876553   3


Q ss_pred             -cchHHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHH-HHHHHhhcccccCCchhHHHHHHHH
Q 011277          138 -TRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGL-MGSLLIGIPVKEIAGWWRICFWVSI  215 (489)
Q Consensus       138 -~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~-~~g~~~~~~l~~~~~~wr~~f~~~~  215 (489)
                       ..+++.+++.|+++|++.+...+....++.|.+|+++|+++++++..+..+|. ..+++++..+.+..+| +..+|...
T Consensus       101 ~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~-~~~~~~~~  179 (402)
T TIGR00897       101 GHANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGE-MNTLWSAL  179 (402)
T ss_pred             cCccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccch-HHHHHHHH
Confidence             35788888999999999887777777788999999999999999999999996 5788877666555564 33333221


Q ss_pred             HHHHH-HHHHhhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHHHHH
Q 011277          216 VPAAI-LCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGS  294 (489)
Q Consensus       216 i~~~~-~~~~~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (489)
                      ....+ ..+..++.++.++    +++.++          +++.    ++          ....++++++++.++......
T Consensus       180 ~~~~~~~~~~~~~~~~~~~----~~~~~~----------~~~~----~~----------~~~~~~~~~~~~~~~~~~~~~  231 (402)
T TIGR00897       180 AFVLTGGVIALFSNKDIFT----PQHMQT----------REKF----SE----------LGKAATILFTNPNVLLGGMVR  231 (402)
T ss_pred             HHHHHHHHHHHhccCCCCC----cccccC----------Ccch----hh----------HHHHHHHHHcChhHHHHHHHH
Confidence            11111 1122222333210    000000          0000    00          001133455555554443332


Q ss_pred             HHHHHHhhhhHHHHHHhHHHHHHhcCCCcc---hHHHHHHHHHHHHHHHHHHHhhhcCCchhHH-HhhHHHHHHHHHHHH
Q 011277          295 TLFALQQLSGINAIFYFSSSVFKSAGLSSG---LANVFVGIANLLGSVVAMVLMDKLGRKALLQ-WSFFSMAVSMAIQVA  370 (489)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~-~~~~~~~i~~~~~~~  370 (489)
                      .+...    .......+.+...++.+.+..   .......++..++.+..|+++||++||+... .+.....++......
T Consensus       232 ~~~~~----~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~  307 (402)
T TIGR00897       232 IINTI----GLFGFAVFLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYY  307 (402)
T ss_pred             HHHHH----HHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHH
Confidence            22221    122233444555555565533   3344566888999999999999999887653 222223332222221


Q ss_pred             HhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCch
Q 011277          371 ASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQL  450 (489)
Q Consensus       371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~  450 (489)
                      ..... .+..  +......+.++.... +..|.. ....|..| +.|+++.|+.+...++++.++|.+.+.+.+..|+..
T Consensus       308 ~~~~~-~~~~--~~~~~~~~~~G~~~~-~~~~~~-~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~  381 (402)
T TIGR00897       308 IPQHF-GHSF--AVALIIAIALGIFLA-GYVPLA-AVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIG  381 (402)
T ss_pred             HHHcc-CCcH--HHHHHHHHHHHHHHH-HHHHHH-HHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHH
Confidence            11111 1111  111111222222222 122333 34567755 689999999999999999999999999998888877


Q ss_pred             hhHHHHHHHHHHHHH
Q 011277          451 LYSIFGTFCLMAVAF  465 (489)
Q Consensus       451 ~~~~~~~~~~~~~~~  465 (489)
                      .+.+.+++.+++.+.
T Consensus       382 ~~~~~a~~~~i~~~~  396 (402)
T TIGR00897       382 VVWIFAALYVVSAFL  396 (402)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            777777766665544

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.95  E-value=3e-26  Score=230.03  Aligned_cols=372  Identities=16%  Similarity=0.152  Sum_probs=225.6

Q ss_pred             eeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhcchHHHHHH-
Q 011277           68 GVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLL-  146 (489)
Q Consensus        68 ~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l~~-  146 (489)
                      ..++..+|.+.+++|.+.+  +.++..+.+.++..++.++.|+++||+|||++++.+.+++.+++++++++++++.+.+ 
T Consensus        36 ~~~~~~~~~i~~~~g~s~~--~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~  113 (455)
T TIGR00892        36 KAVTVFFKELQQIFQATYS--ETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFSSNVIELYLT  113 (455)
T ss_pred             cchhhhHHHHHHHhCcchh--HHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHhhhHHHHHHH
Confidence            3356678899999998755  4578889999998999999999999999999999999999999999999999998865 


Q ss_pred             HHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHHHHHhh
Q 011277          147 GRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMV  226 (489)
Q Consensus       147 ~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~i~~~~~~~~~~  226 (489)
                      .|+++|++.|...+....++.|+++ ++|+++.++...+..+|...++.++..+.+..+ ||+.|++.++..++..+..+
T Consensus       114 ~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~g-wr~~f~~~~~~~~~~~v~~~  191 (455)
T TIGR00892       114 AGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESFG-WRGSFLILGGLLLHCCVCGA  191 (455)
T ss_pred             HHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHHHHH
Confidence            5799999998766666678889886 789999999999999998888877766666566 79999887655544333332


Q ss_pred             h-ccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHHHHHHHHHHHhhhhH
Q 011277          227 F-CAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGI  305 (489)
Q Consensus       227 ~-~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (489)
                      + .++.+..  .+.+.++ +   ++.......++    .......++..+....+.++++.++......++.....    
T Consensus       192 ~~~~~~~~~--~~~~~~~-~---~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----  257 (455)
T TIGR00892       192 LMRPVGPSQ--RVSKSKS-K---EGLPPDGSTKK----LSKKSTAEKINRFLDFSLFTHRGFLVYLSGNVIMFLGF----  257 (455)
T ss_pred             HhCCCCccc--ccccccc-c---ccCCCCCcccc----ccccchhhhhhhhcchHHhcCchHHHHHHHHHHHHHHc----
Confidence            2 2322110  0000000 0   00000000000    00000000000000113455555554433322222211    


Q ss_pred             HHHHHhHHHHHHhcCCCc---chHHHHHHHHHHHHHHHHHHHhhhc--CCchhHHHhhHHHHHHHHHHHHHhhccCCCch
Q 011277          306 NAIFYFSSSVFKSAGLSS---GLANVFVGIANLLGSVVAMVLMDKL--GRKALLQWSFFSMAVSMAIQVAASSSYIPGSA  380 (489)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~g~~~~g~l~dr~--grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  380 (489)
                      .....+.+...++.+.+.   +......+++.+++.++.+++.||.  ++|+...........+...+.....    .. 
T Consensus       258 ~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~----~~-  332 (455)
T TIGR00892       258 FAPIIFLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALA----GD-  332 (455)
T ss_pred             cchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHh----ch-
Confidence            111223333334445443   3455566777888888999999974  3333332222111111111111111    11 


Q ss_pred             hhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CchhhHHHHHHH
Q 011277          381 SLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLG-PQLLYSIFGTFC  459 (489)
Q Consensus       381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g-~~~~~~~~~~~~  459 (489)
                       .+..+...++++++++ ...+....+..|.+|++.+++++|+.+....++.+++|.+.+.+.+..+ +...|.+.+++.
T Consensus       333 -~~~~~i~~~~~G~~~g-~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~  410 (455)
T TIGR00892       333 -YTGLVIYCIFFGLSFG-SVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIV  410 (455)
T ss_pred             -HHHHHHHHHHHHHHhc-hHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHH
Confidence             1111122223333322 2234455677899999999999999999999999999998888888764 666777766665


Q ss_pred             HHHHH
Q 011277          460 LMAVA  464 (489)
Q Consensus       460 ~~~~~  464 (489)
                      +++.+
T Consensus       411 li~~~  415 (455)
T TIGR00892       411 VSAGL  415 (455)
T ss_pred             HHHHH
Confidence            55544

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.95  E-value=3.6e-25  Score=223.87  Aligned_cols=370  Identities=16%  Similarity=0.153  Sum_probs=235.0

Q ss_pred             HHHHHhhhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhc-----hhhHH-HHHhHHHHH
Q 011277           56 ATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGV-----GRRRA-FQLCALPMI  129 (489)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~-----GRr~~-~~~~~~~~~  129 (489)
                      ..+..+..|......+..+|...++.|.+.++  .+.. +.....+ ++.+++|+++||+     |||+. +..+.++.+
T Consensus        17 ~~~l~~~~gl~~~~~~~~l~~~l~~~g~~~~~--ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~   92 (491)
T PRK11010         17 LLILGFASGLPLALTSGTLQAWMTVENIDLKT--IGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLL   92 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHH--HHHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchHHHHHHHHHHH
Confidence            33444566667777788889888888876543  3333 3333343 6889999999999     99986 557777777


Q ss_pred             HHHHHHhhc---chHHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhccccc-CCc
Q 011277          130 IGASISATT---RNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKE-IAG  205 (489)
Q Consensus       130 i~~~l~~~~---~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~-~~~  205 (489)
                      ++..+.++.   .+++.+.+.|++.|++.+...+...+++.|++|+++|+++.++...+..+|.++++.++..+.+ ..|
T Consensus        93 ~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~G  172 (491)
T PRK11010         93 VAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRYLG  172 (491)
T ss_pred             HHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence            777776664   4678888999999999988888899999999999999999999999999998888888777666 345


Q ss_pred             hhHHHHHHHHHHHHHHHHHhhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhcc
Q 011277          206 WWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGR  285 (489)
Q Consensus       206 ~wr~~f~~~~i~~~~~~~~~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (489)
                       ||..|++.++..++..+..++.||+++.   +++.++.++                          ....++++.++++
T Consensus       173 -Wr~~f~i~a~l~ll~~l~~~~~~e~~~~---~~~~~~~~~--------------------------~~~~~l~~~~~~~  222 (491)
T PRK11010        173 -WQGMYWLMAALLIPCIIATLLAPEPTDT---IPVPKTLEQ--------------------------AVVAPLRDFFGRN  222 (491)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHhcCCCccc---cccccchhh--------------------------hHHHHHHHHHcCc
Confidence             7999998766655555555567886531   000000000                          0001233444444


Q ss_pred             chhHHHHHHHHHHHHhhhhHHHHHHhHHHHHHhcCCCcc---hHH-HHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHH
Q 011277          286 HFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSG---LAN-VFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSM  361 (489)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~  361 (489)
                      ..+.......++......   ...+..+...+..|.+..   ... ....++.++|.+++|+++||+|+|+.+..+....
T Consensus       223 ~~~~~ll~~~l~~~~~~~---~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~  299 (491)
T PRK11010        223 NAWLILLLIVLYKLGDAF---AMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQ  299 (491)
T ss_pred             CHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            444333222222211111   111122222334555543   333 2334678899999999999999988776555444


Q ss_pred             HHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 011277          362 AVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLR  441 (489)
Q Consensus       362 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~  441 (489)
                      ++...........  ....  +.......+....++.+.+ ....+..++.|++.+++.+|+.+++..++..+.+.+.+.
T Consensus       300 ~l~~l~~~~l~~~--~~~~--~~l~~~~~l~~~~~g~~~~-~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~  374 (491)
T PRK11010        300 GVSNAGYWLLSIT--DKNL--YSMGAAVFFENLCGGMGTA-AFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGW  374 (491)
T ss_pred             HHHHHHHHHHHhc--cccH--HHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4433322211111  1111  1111111221112222222 234567788899999999999999999998888888888


Q ss_pred             HHHHhCCchhhHHHHHHHHHHHHHHH
Q 011277          442 LLEQLGPQLLYSIFGTFCLMAVAFVK  467 (489)
Q Consensus       442 l~~~~g~~~~~~~~~~~~~~~~~~~~  467 (489)
                      +.+..|+...|.+.+++++.+.+...
T Consensus       375 l~~~~G~~~~f~~~~~~~l~~l~~~~  400 (491)
T PRK11010        375 FVEAHGWPTFYLFSVAAAVPGLLLLL  400 (491)
T ss_pred             HHHHhChHHHHHHHHHHHHHHHHHHH
Confidence            88988988888777777777655554

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.95  E-value=2.8e-25  Score=218.50  Aligned_cols=325  Identities=17%  Similarity=0.255  Sum_probs=211.1

Q ss_pred             cceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhcchHHHHH
Q 011277           66 HLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGML  145 (489)
Q Consensus        66 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l~  145 (489)
                      ..+...+.+|.+.+++|.+.+  +.++..+.+.++..+++++.|+++||+|||+++..+.++.+++..++..+++++.+.
T Consensus         6 ~~~~~~p~~~~~~~~~~~s~~--~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~   83 (377)
T PRK11102          6 AIDMYLPALPVIAADFGVSAG--SVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLI   83 (377)
T ss_pred             HHHHHhccHHHHHHHhCCCHH--HHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHH
Confidence            344567889999999998644  568899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHHH-HH
Q 011277          146 LGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILC-LA  224 (489)
Q Consensus       146 ~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~i~~~~~~-~~  224 (489)
                      +.|+++|++.+...+....++.|++|+++|++..++......+|..+++.++..+.+..+ ||+.|++..+..++.. +.
T Consensus        84 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~  162 (377)
T PRK11102         84 YMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFS-WHAIFWVLALAAILAAALV  162 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-hHHHHHHHHHHHHHHHHHH
Confidence            999999999998888888999999999999999999999999999999988877766556 6999887655444433 33


Q ss_pred             hhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHHHHHHHHHHHhhhh
Q 011277          225 MVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSG  304 (489)
Q Consensus       225 ~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (489)
                      .++.||+++-   +++ ++           .+.++              ...++++.+++++.........+.    +..
T Consensus       163 ~~~~~~~~~~---~~~-~~-----------~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~----~~~  209 (377)
T PRK11102        163 FFFIPETLPK---ERR-QP-----------FHLRT--------------TIRNFASLFRHKRVLGYMLASGFS----FAG  209 (377)
T ss_pred             HHhCCccCcc---ccc-CC-----------CChHH--------------HHHHHHHHHcChHHHHHHHHHHHH----HHH
Confidence            4556765320   000 00           00000              001223344444433322221111    111


Q ss_pred             HHHHHHhHHHHH-HhcCCC---cchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCch
Q 011277          305 INAIFYFSSSVF-KSAGLS---SGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSA  380 (489)
Q Consensus       305 ~~~~~~~~~~~~-~~~~~~---~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  380 (489)
                      ......+.+..+ +..+.+   .+.......++..++.++.+++.||+|||+.+..+.....+...........  ... 
T Consensus       210 ~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-  286 (377)
T PRK11102        210 MFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALL--DLG-  286 (377)
T ss_pred             HHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHH--hhh-
Confidence            111111222222 223433   3455666778888999999999999999998877765544433322221110  011 


Q ss_pred             hhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHH
Q 011277          381 SLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVIN  432 (489)
Q Consensus       381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~  432 (489)
                       .+........+...... ..+....+..|..| +.|+++.++.+......+
T Consensus       287 -~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g  335 (377)
T PRK11102        287 -FWALVVGVAAFVGCVSM-ISSNAMAVILDEFP-HMAGTASSLAGTLRFGIG  335 (377)
T ss_pred             -HHHHHHHHHHHHHHHHH-hhHHHHHHHhcccc-ccchHHHHHHHHHHHHHH
Confidence             11111111112111111 12222335667777 889999999877655433

>PRK10133 L-fucose transporter; Provisional

Probab=99.94  E-value=6.1e-25  Score=219.09  Aligned_cols=363  Identities=12%  Similarity=0.108  Sum_probs=228.2

Q ss_pred             HHHHHHHhhhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHH
Q 011277           54 LVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGAS  133 (489)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~  133 (489)
                      +.+++..++.+.+....++.+|.+.+++|.+.  .+.++..+.+.+|+.+++++.|+++||+|||+++..+.++++++++
T Consensus        29 ~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~s~--~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~  106 (438)
T PRK10133         29 ALLCSLFFLWAVANNLNDILLPQFQQAFTLTN--FQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAA  106 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence            44444556667777778888999999999864  4568999999999999999999999999999999999999999998


Q ss_pred             HH---hhcchHHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccc--c------
Q 011277          134 IS---ATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVK--E------  202 (489)
Q Consensus       134 l~---~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~--~------  202 (489)
                      ++   +.+++++.++++|+++|+|.|...+....++.|+.|+++|++.+++.+..+.+|..++++++..+.  .      
T Consensus       107 l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~~~~~~~~~~  186 (438)
T PRK10133        107 LFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQ  186 (438)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccch
Confidence            75   568999999999999999999999999999999888887777888999998999888888765322  0      


Q ss_pred             ----------CCch-------hHHHHHHH-HHHHHHHHHH-hhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHH
Q 011277          203 ----------IAGW-------WRICFWVS-IVPAAILCLA-MVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAE  263 (489)
Q Consensus       203 ----------~~~~-------wr~~f~~~-~i~~~~~~~~-~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (489)
                                ..+|       ||++|+.. .+..++..+. ....||.+.    + +.++                    
T Consensus       187 ~~~~~l~~~~~~~w~~~~~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~----~-~~~~--------------------  241 (438)
T PRK10133        187 DVLDKMTPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQS----D-NHSD--------------------  241 (438)
T ss_pred             hhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc----c-cccc--------------------
Confidence                      0121       56666532 2222222222 222343210    0 0000                    


Q ss_pred             HHhhccCCCCcchhHHHhhhccchhHHHHHHHHHHHHhhhhHHHHHHhHHHH-HH-hcCCCc---chHHHHHHHHHHHHH
Q 011277          264 LSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSV-FK-SAGLSS---GLANVFVGIANLLGS  338 (489)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~---~~~~~~~~i~~~~g~  338 (489)
                           ++......+.+++++++.++......+++......    ...|.+.. .+ ..+.+.   +.......++..+|.
T Consensus       242 -----~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~----~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~  312 (438)
T PRK10133        242 -----AKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQTA----CWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGR  312 (438)
T ss_pred             -----ccccchhhhHHHHHhCchHHHHHHHHHHHHHHHHH----HHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHH
Confidence                 00000011233455566655443333232221111    11122222 22 345543   456677888999999


Q ss_pred             HHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhh
Q 011277          339 VVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRA  418 (489)
Q Consensus       339 ~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~  418 (489)
                      ++++++.||+|+|+++..+.....+.+.+....     +....    +..+.+.+++.+. ..|.......|.+|+ ..+
T Consensus       313 ~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~-----~~~~~----~~~~~l~glg~~~-i~P~~~s~a~~~~~~-~~~  381 (438)
T PRK10133        313 FTGTWLISRFAPHKVLAAYALIAMALCLISAFA-----GGHVG----LIALTLCSAFMSI-QYPTIFSLGIKNLGQ-DTK  381 (438)
T ss_pred             HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHc-----CChHH----HHHHHHHHHHHHH-HHHHHHHHHHcccch-hhc
Confidence            999999999999998877655544433322211     11111    1112222222222 234555567777764 466


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CchhhHHHHHHHHHHHH
Q 011277          419 KAMAVCMSVHWVINFFVGLLFLRLLEQLG-PQLLYSIFGTFCLMAVA  464 (489)
Q Consensus       419 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~g-~~~~~~~~~~~~~~~~~  464 (489)
                      ++.++.. +..+++.++|.+.+.+.+..| ....|.+...+.+....
T Consensus       382 ~as~l~~-~~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~~~~~  427 (438)
T PRK10133        382 YGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFI  427 (438)
T ss_pred             cchhHHh-HHhccchHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence            7777765 455677888888787777776 45566544444433333

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.94  E-value=1.8e-25  Score=218.93  Aligned_cols=337  Identities=17%  Similarity=0.155  Sum_probs=204.6

Q ss_pred             ccceeeccchhh-hhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhcc-hHH
Q 011277           65 YHLGVVNEPLES-ISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTR-NLI  142 (489)
Q Consensus        65 ~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~-~~~  142 (489)
                      .+.....+.+|. +.+++|++.+  +.+++.+.+.+++.+++++.|+++||+|||+.+..+.++..++.+++++++ +++
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~s~~--~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~~~~~   92 (366)
T TIGR00886        15 SVWFAFSPLAVQMIKDDLGLSTA--QLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQSYS   92 (366)
T ss_pred             HHHHHhHHhhhHHHHHHhCCCHH--HhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence            333446667785 8899998744  568999999999999999999999999999999999999999999999999 999


Q ss_pred             HHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhccccc----------CCchhHHHHH
Q 011277          143 GMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKE----------IAGWWRICFW  212 (489)
Q Consensus       143 ~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~----------~~~~wr~~f~  212 (489)
                      .+++.|+++|++.+. ......+++|++|+++|+++.+++.....+|..+++.++..+..          ..+ ||+.|+
T Consensus        93 ~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~-w~~~~~  170 (366)
T TIGR00886        93 VLLLLRLFIGIAGGS-FASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLA-WGWAFV  170 (366)
T ss_pred             HHHHHHHHHHHhchh-hHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccc-ccchhH
Confidence            999999999998654 45567889999999999999999886666666555555433221          224 798884


Q ss_pred             H--HHHHHHHHHHHhhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHH
Q 011277          213 V--SIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVV  290 (489)
Q Consensus       213 ~--~~i~~~~~~~~~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (489)
                      +  ..+..+...+...+.+|+|+.     +.++.+...++    ..           ...++.......+.+++++++..
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~----~~-----------~~~~~~~~~~~~~~~~~~~~~~~  230 (366)
T TIGR00886       171 IVPAGILLLPALLIFFVGADTPPG-----KPATGKLSFKG----AR-----------WSVGTGALGDQLKVFRDRHTWIL  230 (366)
T ss_pred             HHHHHHHHHHHHHHHHhcccCCcc-----cccchhccccc----cc-----------ccccchhHHHHHHHHhccchhhH
Confidence            3  233333333444556776531     11110000000    00           00000001123445555555444


Q ss_pred             HHHHHHHHHHhhhhHHHHHHhHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHH
Q 011277          291 FIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVA  370 (489)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~  370 (489)
                      .....+............+.|..+.++......+.......+..+++.++++++.||+|||+....+......+..+...
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~  310 (366)
T TIGR00886       231 ALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVL  310 (366)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHh
Confidence            33322222111111112222222222211222344555666778889999999999999988776665544444333322


Q ss_pred             HhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHH
Q 011277          371 ASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVI  431 (489)
Q Consensus       371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~  431 (489)
                      ...   .. ......+..........+.+.+ ..+...+|+.| ++|++++|+.+++++++
T Consensus       311 ~~~---~~-~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~-~~~g~~~g~~~~~~~~g  365 (366)
T TIGR00886       311 GLV---SP-LSLAVFIVLFVALFFFSGAGNG-STFALVPHIFR-RATGAVSGLVGAIGNLG  365 (366)
T ss_pred             cCC---Cc-chHHHHHHHHHHHHHHhccccc-hhhhcchhhch-hhcccHHHHHHHhccCC
Confidence            111   10 0122222222333333343333 34456788887 79999999998887654

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.94  E-value=1.1e-24  Score=215.39  Aligned_cols=339  Identities=16%  Similarity=0.161  Sum_probs=214.6

Q ss_pred             HHHHhhhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHh
Q 011277           57 TLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISA  136 (489)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~  136 (489)
                      .+.........+...+.+|.+.+++|.+.+  +.++..+.+.+++.++++++|+++||+|||+++..+.++..++.+++.
T Consensus        14 ~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~--~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~   91 (394)
T PRK11652         14 VLLVAVGQMAQTIYVPAIADMARDLNVREG--AVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVAL   91 (394)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHhCCCHH--HHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHH
Confidence            333334444455667788999999998754  568899999999999999999999999999999999999999999999


Q ss_pred             hcchHHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHH
Q 011277          137 TTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIV  216 (489)
Q Consensus       137 ~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~i  216 (489)
                      .+++++.+++.|+++|++.+...+....+..|.+++++|+++.+++..+..+|...++.++..+.+..+ ||+.|++..+
T Consensus        92 ~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g-~~~~f~~~~~  170 (394)
T PRK11652         92 FAHSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFG-WRACYLFLLL  170 (394)
T ss_pred             HHccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-hHHHHHHHHH
Confidence            999999999999999999888777777888999999999999999999999999889888877766666 6999987655


Q ss_pred             HHHHH-HHHhhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHHHHHH
Q 011277          217 PAAIL-CLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGST  295 (489)
Q Consensus       217 ~~~~~-~~~~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (489)
                      ..++. .+..++.||+++.   +++.++    .                          ...+++.++++.++.......
T Consensus       171 ~~~~~~~~~~~~~~~~~~~---~~~~~~----~--------------------------~~~~~~~~~~~~~~~~~~~~~  217 (394)
T PRK11652        171 LGAGVTFSMARWMPETRPA---DARRTR----V--------------------------LASYRTLLSNRRFNCYLLMLI  217 (394)
T ss_pred             HHHHHHHHHHHhCCccCcc---ccchhH----H--------------------------HHHHHHHHcChHHHHHHHHHH
Confidence            44433 3334566776421   000000    0                          011223333444443322221


Q ss_pred             HHHHHhhhhHHHHHHhHHHHHHh-cCCCc---chHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHH
Q 011277          296 LFALQQLSGINAIFYFSSSVFKS-AGLSS---GLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAA  371 (489)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~  371 (489)
                      ....    .......+.+..+++ .+.+.   ++......++.+++..+.+++.||++++...  ......+........
T Consensus       218 ~~~~----~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~  291 (394)
T PRK11652        218 GTLA----GIAVFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQ--SVICCLLAGLLMWIP  291 (394)
T ss_pred             HHHH----HHHHHHHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence            1111    111111111222222 34433   3444555677777888888888888733222  222222222221111


Q ss_pred             hhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 011277          372 SSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRL  442 (489)
Q Consensus       372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l  442 (489)
                      .... ..  ..+........+..+.+. ..|....+..|.+| +.++++.++.+....++..+++.+...+
T Consensus       292 ~~~~-~~--~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~  357 (394)
T PRK11652        292 GWFG-VM--NVWTLLVPAALFFFGAGM-LFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAML  357 (394)
T ss_pred             HHhc-cc--cHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            1100 01  111112222222232222 23444556678887 6889999999998888888888766544

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.93  E-value=3e-24  Score=240.64  Aligned_cols=333  Identities=12%  Similarity=0.005  Sum_probs=212.0

Q ss_pred             hhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHH---HhhcchHHHHHHHHHHH
Q 011277           75 ESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASI---SATTRNLIGMLLGRFVV  151 (489)
Q Consensus        75 ~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l---~~~~~~~~~l~~~R~l~  151 (489)
                      +.+..+++.+.+....+++.+++.+++.++++++|+++||+|||++++++.++..++.++   +..+.+++.++++|+++
T Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~  113 (1146)
T PRK08633         34 NTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLL  113 (1146)
T ss_pred             HHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence            445556666555555688999999999999999999999999999999988766555544   34457899999999999


Q ss_pred             hhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccC--------CchhHHHHHHH-HHHHHHHH
Q 011277          152 GTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEI--------AGWWRICFWVS-IVPAAILC  222 (489)
Q Consensus       152 G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~--------~~~wr~~f~~~-~i~~~~~~  222 (489)
                      |++.+...+....++.|++|+++|+++++++..+..+|.++|++++..+.+.        .+||++.+.+. ....++.+
T Consensus       114 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (1146)
T PRK08633        114 GAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLAVAVLGL  193 (1146)
T ss_pred             HHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999998776654        23445444433 23333333


Q ss_pred             HHhhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHHHHHHHHHHHhh
Q 011277          223 LAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQL  302 (489)
Q Consensus       223 ~~~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (489)
                      +..+.+||+|.....+.  ++ .+       ....+    +          ....++.+++++.++...+...+......
T Consensus       194 ~~~~~~~~~~~~~~~~~--~~-~~-------~~~~~----~----------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  249 (1146)
T PRK08633        194 IFAYRLPKVPAAAPEVF--DK-KK-------YLFPK----L----------LWRNLKLLRSDRVLWLAIIGLSYFWFISQ  249 (1146)
T ss_pred             HHHhcCcCCCCCCcccc--cc-cc-------cccHH----H----------HHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence            44556788764211000  00 00       00000    0          00123344555555544433333222211


Q ss_pred             hhHHHHHHhHHHHHHhcCC-CcchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchh
Q 011277          303 SGINAIFYFSSSVFKSAGL-SSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSAS  381 (489)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  381 (489)
                      ......+.|....++.... ..++.....+++.+++.++.+++.||+++++.+.++.++++++.+++....        .
T Consensus       250 ~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~--------~  321 (1146)
T PRK08633        250 LAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAP--------S  321 (1146)
T ss_pred             HHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhh--------h
Confidence            1111222222222222222 235566777788899999999999999998877776665555544433221        1


Q ss_pred             hHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHH
Q 011277          382 LYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFL  440 (489)
Q Consensus       382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~  440 (489)
                      .+..+...++++++.+.. .+....+..|..|++.|++++|+.+.+.++++.+++.+..
T Consensus       322 ~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~  379 (1146)
T PRK08633        322 LASVLVLFFLFGFSAGLF-IVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTT  379 (1146)
T ss_pred             HHHHHHHHHHHHHHHHHh-hHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHH
Confidence            111222222233332222 2334567789999999999999999999888866665543

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.93  E-value=6.9e-24  Score=198.12  Aligned_cols=356  Identities=18%  Similarity=0.200  Sum_probs=234.4

Q ss_pred             eeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhcchHH---HHH
Q 011277           69 VVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLI---GML  145 (489)
Q Consensus        69 ~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~---~l~  145 (489)
                      ..++..+.+.+|+|+|.+  |.++++++-.+..++.-++.|++.||||.|++...++++..+-++..+++.+.+   +++
T Consensus        32 l~s~l~~~i~~~~~LS~~--q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~~~~~ll  109 (417)
T COG2223          32 LFSPLGVFIKSDFGLSEG--QKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQLL  109 (417)
T ss_pred             HHHHHHhhhccccCCCHH--HHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCCchHHHH
Confidence            344455667789888754  568999999998899999999999999999999999999999988888876555   999


Q ss_pred             HHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCc--hhHHHHHHHHHHHHHHHH
Q 011277          146 LGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAG--WWRICFWVSIVPAAILCL  223 (489)
Q Consensus       146 ~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~--~wr~~f~~~~i~~~~~~~  223 (489)
                      +.+.+.|++ |+..++...++++++||+++|.+.+++. ..++|..+...++..+....+  +||..-.+-.++.++..+
T Consensus       110 ~~gll~G~~-GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v  187 (417)
T COG2223         110 VIGLLLGLA-GASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAV  187 (417)
T ss_pred             HHHHHHhcc-cceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence            999999996 5567788889999999999999999998 666665544444444443445  478887765555444333


Q ss_pred             H-hhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHHHHHHHHHHHhh
Q 011277          224 A-MVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQL  302 (489)
Q Consensus       224 ~-~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (489)
                      . ++...+.|......++ .                               ....++...++++.|.+.+....    .+
T Consensus       188 ~~~~~~~d~p~~r~~~~~-~-------------------------------~~~~~~~v~~~~~~W~lsllY~~----tF  231 (417)
T COG2223         188 LAWLGMNDVPEHRASVKP-Q-------------------------------LPAQLKAVFSNKDTWLLSLLYFA----TF  231 (417)
T ss_pred             HHHHHhCCChhhhccccc-c-------------------------------chhHHHHHhcCcchHHHHHHHHH----HH
Confidence            3 3333333321000000 0                               00123344445555554433322    22


Q ss_pred             hhHHHHHHhHH----HHHHhcCCCcchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCC
Q 011277          303 SGINAIFYFSS----SVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPG  378 (489)
Q Consensus       303 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~  378 (489)
                      .++..+..+.+    +.|...+.+.+...........+...++|+++||+|.+|+....+..+.++..+.....+.... 
T Consensus       232 G~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~~-  310 (417)
T COG2223         232 GGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGFGH-  310 (417)
T ss_pred             HHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHcccccccc-
Confidence            22223333333    3333333334444444555566667789999999999999988888888877765543322111 


Q ss_pred             chhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CchhhHHHHH
Q 011277          379 SASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLG-PQLLYSIFGT  457 (489)
Q Consensus       379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g-~~~~~~~~~~  457 (489)
                      .......+...+...+..++|-+.+. -+++.++| +.-+...|++..++.++++..|..+...++..| +...|.++..
T Consensus       311 ~~~~~~~~~~~l~l~~~~G~GnGsvf-k~Ip~if~-~~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~  388 (417)
T COG2223         311 GGSFVVFVAVFLALFVFAGLGNGSVF-KMIPVIFP-KETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLA  388 (417)
T ss_pred             CcchHHHHHHHHHHHHHhccCcchhe-eechHHHH-hhhhHHHHHHHHhccccccchhHHHHHHHHhcccHHHHHHHHHH
Confidence            11222222333333444555555443 46778887 578889999999999999999999988888877 4566777777


Q ss_pred             HHHHHHHHHH
Q 011277          458 FCLMAVAFVK  467 (489)
Q Consensus       458 ~~~~~~~~~~  467 (489)
                      +++++.++.+
T Consensus       389 ~~~~a~v~~~  398 (417)
T COG2223         389 FYLVALVLTW  398 (417)
T ss_pred             HHHHHHHHHH
Confidence            7766666443

>TIGR00896 CynX cyanate transporter

Probab=99.93  E-value=7.3e-24  Score=206.58  Aligned_cols=329  Identities=16%  Similarity=0.169  Sum_probs=214.1

Q ss_pred             eeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhcchHHHHHHH
Q 011277           68 GVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLG  147 (489)
Q Consensus        68 ~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l~~~  147 (489)
                      ....+.+|.+.+|+|.+.+  +.++..+.+.+++.+++++.|+++||+|||+++..+.++..++.+++ .+++++.+++.
T Consensus        17 ~~~~~~lp~l~~~~~~s~~--~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l~~~   93 (355)
T TIGR00896        17 TSVGPLLPQIRSALGMSFS--VAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTALLFAG   93 (355)
T ss_pred             ccCcccHHHHHHHhCCCHH--HHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHHHHH
Confidence            4567889999999998754  56899999999999999999999999999999999999988888877 77899999999


Q ss_pred             HHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCch-hHHHHHHHHHHHHHHHHHhh
Q 011277          148 RFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGW-WRICFWVSIVPAAILCLAMV  226 (489)
Q Consensus       148 R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~-wr~~f~~~~i~~~~~~~~~~  226 (489)
                      |++.|++.+...+....++.|++| ++|+++.+++..+..+|..+++.++..+.+..++ ||+.|....+..++.  ...
T Consensus        94 ~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~~--~~~  170 (355)
T TIGR00896        94 TALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALLA--LLA  170 (355)
T ss_pred             HHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH--HHH
Confidence            999999999887778888889886 5899999999999999988888777666554433 798887644332222  222


Q ss_pred             hccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHHHHHHHHHHHhhhhHH
Q 011277          227 FCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGIN  306 (489)
Q Consensus       227 ~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (489)
                      +.||+++      ++++          +             ++   ......++.++++..+.......+....    ..
T Consensus       171 ~~~~~~~------~~~~----------~-------------~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~  214 (355)
T TIGR00896       171 WIPQVRR------RVAA----------N-------------QT---TTRLTPVRIWRSPLAWQVTVFFGLQSGL----YY  214 (355)
T ss_pred             Hhhhhcc------ccCC----------C-------------CC---CCCCCCchhhcCHhHHHHHHHHHHHHHH----HH
Confidence            3344321      0000          0             00   0001122334444443322221111111    12


Q ss_pred             HHHHhHHHHHHhcCCCc---chHHHHHHHHHHHHHHHHHHHhhhc-CCchhHHHhhHHHHHHHHHHHHHhhccCCCchhh
Q 011277          307 AIFYFSSSVFKSAGLSS---GLANVFVGIANLLGSVVAMVLMDKL-GRKALLQWSFFSMAVSMAIQVAASSSYIPGSASL  382 (489)
Q Consensus       307 ~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~g~~~~g~l~dr~-grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  382 (489)
                      ....+.+..+++.+.+.   +.......++.+++.++.|++.||+ +||+.+..+.....++.........     .. .
T Consensus       215 ~~~~~lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-~  288 (355)
T TIGR00896       215 SLIGWLPAILISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPM-----HG-L  288 (355)
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhh-----hH-H
Confidence            22234444445455543   4556667788999999999999999 4565655555555554443332211     11 1


Q ss_pred             HHHHHHHHHHHHHHhcCcccccccccc-ccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 011277          383 YLSVGGMLMFVLTFALGAGPVPSLLLP-EIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGP  448 (489)
Q Consensus       383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~  448 (489)
                      ..   ...+++++.+ ...|....... +..+++.+++..++.+.++++++.++|.+.+.+.+..|.
T Consensus       289 ~~---~~~l~g~~~g-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g~  351 (355)
T TIGR00896       289 WA---WALVLGLGQG-GAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISGN  351 (355)
T ss_pred             HH---HHHHHHHhhh-hHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            11   1112222221 11233222333 444567789999999999999999999998888887663

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.93  E-value=9.5e-25  Score=215.67  Aligned_cols=281  Identities=21%  Similarity=0.245  Sum_probs=197.5

Q ss_pred             HHHHHhhhhcc-ceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHH
Q 011277           56 ATLSSFLFGYH-LGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASI  134 (489)
Q Consensus        56 ~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l  134 (489)
                      +++..+....+ .++.+..+..+.+|.+...+  +.+.+.+++.+||++|.++++.|.||+.-.+.+..+.+++++.+++
T Consensus        50 ~~~~y~~~~~d~~si~~a~l~g~~edl~~~~~--~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~  127 (495)
T KOG2533|consen   50 LCYLYFHAYLDKSSIVNASLSGLKEDLKLVGN--QLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFL  127 (495)
T ss_pred             HHHHHHHHhcchhcchhHHHcCCccccchhhh--hhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHH
Confidence            34433443444 34556666666788887655  4578999999999999999999999999999999999999999988


Q ss_pred             HhhcchHHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhccc------ccCCchhH
Q 011277          135 SATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPV------KEIAGWWR  208 (489)
Q Consensus       135 ~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l------~~~~~~wr  208 (489)
                      .+..+|++.+++.|++.|+..+..+|....+++-|+.++|||+.++++..+..+|.+.|.+++..+      ....| ||
T Consensus       128 ~~~~~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~g-W~  206 (495)
T KOG2533|consen  128 TAAVHSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAG-WR  206 (495)
T ss_pred             HHHHhhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCC-ce
Confidence            888999999999999999999999999999999999999999999999999999988888887653      22344 79


Q ss_pred             HHHHHHHHHHHHHH-HHhhhccCChH--HHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhcc
Q 011277          209 ICFWVSIVPAAILC-LAMVFCAESPH--WLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGR  285 (489)
Q Consensus       209 ~~f~~~~i~~~~~~-~~~~~~~Esp~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (489)
                      |.|++.++..+... +.++++|+.|.  +...   ++|.+-..++.+          +.......++.+...+.+.++++
T Consensus       207 ~~FiI~G~i~~~~gi~~f~~lp~~P~~~~fl~---~~ek~~~~~~~~----------~~~~~~~~~~~~~~~~~~a~~dp  273 (495)
T KOG2533|consen  207 WLFIIEGVITLVLGIVVFFFLPDNPSKAWFLT---DEEKELVVERLR----------ESPSGGIENKFKWKGFKEALKDP  273 (495)
T ss_pred             eehhHHHHHHHHHHheEEEEecCChhhccccc---hHHHHHHHHHHH----------hccCCCcccccCHHHHHHHHhch
Confidence            99998655555444 45677899986  2111   111110111110          00011111113445567777777


Q ss_pred             chhHHHHHHHHHHHHhhhhHHHHHHhHHHHHHh-cCC---CcchHHHHHHHHHHHHHHHHHHHhhh----cCCchhHHH
Q 011277          286 HFRVVFIGSTLFALQQLSGINAIFYFSSSVFKS-AGL---SSGLANVFVGIANLLGSVVAMVLMDK----LGRKALLQW  356 (489)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~i~~~~g~~~~g~l~dr----~grr~~~~~  356 (489)
                      ..+...+..++....    .+...++.+.+.+. .+.   +++...++..++.+++.+++|+++||    ..+|.....
T Consensus       274 ~vw~~~l~~~~~~lv----~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~  348 (495)
T KOG2533|consen  274 GVWPFSLCYFFLKLV----NYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIV  348 (495)
T ss_pred             hHHHHHHHHHHHhhc----cccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            666655443333222    23345566655555 223   35677889999999999999999999    445544433

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.93  E-value=1.7e-23  Score=206.87  Aligned_cols=356  Identities=14%  Similarity=0.064  Sum_probs=221.4

Q ss_pred             HHhhhhccceeeccchhh-hhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhh
Q 011277           59 SSFLFGYHLGVVNEPLES-ISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISAT  137 (489)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~  137 (489)
                      .+++.......+.+.++. +.+++|.+  ..+.|+..+...++..+.+++.|+++||+|||+++..+.++..++.++++.
T Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~g~s--~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~   95 (400)
T PRK11646         18 DNMLVVLGFFVVFPLISIRFVDQLGWA--AVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAI   95 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHH
Confidence            334444444444555553 46777775  446788999888898899999999999999999999999999999999999


Q ss_pred             cchHHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHH
Q 011277          138 TRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVP  217 (489)
Q Consensus       138 ~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~i~  217 (489)
                      +++++.+.+.|+++|++.+...+....++.|++|+++|+++.++......+|..+|+.++..+. ..+ ||+.|++..+.
T Consensus        96 ~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g-~~~~f~~~~~~  173 (400)
T PRK11646         96 AHEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYD-FRLVCATGAVL  173 (400)
T ss_pred             hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhh-HHHHHHHHHHH
Confidence            9999999999999999988877888888999999999999999999999999999999887776 345 79999876554


Q ss_pred             HHHHHH-HhhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHHHHHHH
Q 011277          218 AAILCL-AMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTL  296 (489)
Q Consensus       218 ~~~~~~-~~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (489)
                      .++..+ ..++.||.+.    +.+.++                              ....+++.++++.+.........
T Consensus       174 ~~~~~i~~~~~~~~~~~----~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~  219 (400)
T PRK11646        174 FVLAAAFNAWLLPAYKL----STVRTP------------------------------VREGMTRVLRDKRFVTYVLTLTG  219 (400)
T ss_pred             HHHHHHHHHHhCCcccc----cccchh------------------------------hHHHHHHHHcCchHHHHHHHHHH
Confidence            444332 2334454210    000000                              00112334444444332222211


Q ss_pred             HHHHhhhhHHHHHHhHHHHHHhcCCC---cchHHHHHHHHHHHHHHHHHHHh-hhcCCchhHHHhhHHHHHHHHHHHHHh
Q 011277          297 FALQQLSGINAIFYFSSSVFKSAGLS---SGLANVFVGIANLLGSVVAMVLM-DKLGRKALLQWSFFSMAVSMAIQVAAS  372 (489)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~~~g~~~~g~l~-dr~grr~~~~~~~~~~~i~~~~~~~~~  372 (489)
                      ......    ....+.|...++.+.+   .+......+++...+....+++. ||++.++.+..+....+++..++....
T Consensus       220 ~~~~~~----~~~~~~p~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~  295 (400)
T PRK11646        220 YYMLAV----QVMLMLPIMVNDIAGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVS  295 (400)
T ss_pred             HHHHHH----HHHHhhhhhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhh
Confidence            111111    1111223322332222   23333444444444444445555 456656555555555554443332211


Q ss_pred             hccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhC----C
Q 011277          373 SSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLG----P  448 (489)
Q Consensus       373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g----~  448 (489)
                           . .  +..+....++..+... ..|....+..|..|++.|++++|+.+....++..++|.+.+.+.+..+    .
T Consensus       296 -----~-~--~~~~~~~~l~~~g~~~-~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~~~~~  366 (400)
T PRK11646        296 -----N-L--QQLFTLICLFYIGSII-AEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGKALNQP  366 (400)
T ss_pred             -----h-H--HHHHHHHHHHHHHHHH-HHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHhhcCCc
Confidence                 1 1  1111112222222221 234455678899999999999999999999999999998888877642    2


Q ss_pred             chhhHHHHHHHHHHHHH
Q 011277          449 QLLYSIFGTFCLMAVAF  465 (489)
Q Consensus       449 ~~~~~~~~~~~~~~~~~  465 (489)
                      ...+...+.++++..+.
T Consensus       367 ~~~~~~~~~~~~~~~~~  383 (400)
T PRK11646        367 ELPWMMLGIIGLITLLA  383 (400)
T ss_pred             chHHHHHHHHHHHHHHH
Confidence            34444444444444443

>PRK10054 putative transporter; Provisional

Probab=99.93  E-value=6.9e-24  Score=209.22  Aligned_cols=369  Identities=13%  Similarity=0.086  Sum_probs=237.3

Q ss_pred             HHHhhhhccceeeccchhh-hhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHh
Q 011277           58 LSSFLFGYHLGVVNEPLES-ISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISA  136 (489)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~  136 (489)
                      ...++.....+...+.+|. +.+++|++.  .+.|+..+.+.++..+++++.|+++||+|||+++..+.++..++.++.+
T Consensus        14 ~~~~~~~~g~~~~~~~l~~~l~~~~g~s~--~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~   91 (395)
T PRK10054         14 ASSLLLTIGRGATLPFMTIYLSRQYSLSV--DLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIP   91 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHH
Confidence            3444555555555666654 456778764  4568999999999999999999999999999999999999999998999


Q ss_pred             hcchHHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHH
Q 011277          137 TTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIV  216 (489)
Q Consensus       137 ~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~i  216 (489)
                      ++++++.++++|++.|.+.+...+....+..|..|+++|++..++......+|..++++++..+.+ .+ ||..|++..+
T Consensus        92 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g-~~~~f~~~~~  169 (395)
T PRK10054         92 LVNNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QS-INLPFWLAAI  169 (395)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hc-cCcHHHHHHH
Confidence            999999999999999988777777788889999999999999999999999999999888877654 45 6888887655


Q ss_pred             HHHHHHH-HhhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHHHHHH
Q 011277          217 PAAILCL-AMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGST  295 (489)
Q Consensus       217 ~~~~~~~-~~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (489)
                      ..++..+ ..++.||+++    +++ ++.++                            ..+.++.+++++++.......
T Consensus       170 ~~~i~~i~~~~~~~~~~~----~~~-~~~~~----------------------------~~~~~~~~~~~~~~~~~~~~~  216 (395)
T PRK10054        170 CSAFPLVFIQIWVQRSEK----AIA-TETGS----------------------------VWSPSVLLQDKALLWFTCSGF  216 (395)
T ss_pred             HHHHHHHHHHHHHhcccc----ccc-cchhh----------------------------hhhhhhhccCceehHHHHHHH
Confidence            5444433 3333454421    000 00000                            001123445555554443333


Q ss_pred             HHHHHhhhhHHHHHHhHHHHHHhcCCCc---chHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHh
Q 011277          296 LFALQQLSGINAIFYFSSSVFKSAGLSS---GLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAAS  372 (489)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~  372 (489)
                      +..............|.+.. ...+.+.   +.......+.........+++.||.++|+.+..+.....++........
T Consensus       217 l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  295 (395)
T PRK10054        217 LASFVSGAFASCISQYVMVV-ADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSG  295 (395)
T ss_pred             HHHHHHHHhhhhHHHHHHHh-cccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcc
Confidence            22221111111112222221 1122222   2233333344445556778999999999988777655555544332211


Q ss_pred             hccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhh
Q 011277          373 SSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLY  452 (489)
Q Consensus       373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~  452 (489)
                           +..  +........+..+.. ...|....+..+..|++.|++..+..+ ..+++..++|.+.+.++|..|+...|
T Consensus       296 -----~~~--~~~~~~~~~~~~g~~-~~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~  366 (395)
T PRK10054        296 -----NSL--LLWGMSAAVFTVGEI-IYAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLPPWSLF  366 (395)
T ss_pred             -----hHH--HHHHHHHHHHHHHHH-HHHhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcChhhHH
Confidence                 111  111111222222221 123455567888899999999988754 67789999999999999999888888


Q ss_pred             HHHHHHHHHHHHHHHhhcccC
Q 011277          453 SIFGTFCLMAVAFVKRNVVET  473 (489)
Q Consensus       453 ~~~~~~~~~~~~~~~~~~~et  473 (489)
                      .+++++..++.++..+...|+
T Consensus       367 ~~~~~~~~~~~~~~~~~~~~~  387 (395)
T PRK10054        367 VILALAIVAAWLLMLKGMRAR  387 (395)
T ss_pred             HHHHHHHHHHHHHHHhccccC
Confidence            887777766666665545543

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.93  E-value=2.1e-23  Score=206.29  Aligned_cols=354  Identities=14%  Similarity=0.119  Sum_probs=230.4

Q ss_pred             HHHHHHHhhhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHH
Q 011277           54 LVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGAS  133 (489)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~  133 (489)
                      ++++...+..|+..+..++.+|.+++++|.+.  .+.|++.+.+.+++.+++++.|++.||+|||+++..+.++++++..
T Consensus         6 ~~~~~~f~~~G~~~~~~~~l~~~~~~~~~~s~--~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~   83 (410)
T TIGR00885         6 ALITSLFALWGFANDITNPMVPQFQQAFTLTA--FQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAF   83 (410)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence            45566667778888888899999999999864  4678999999999999999999999999999999999999999988


Q ss_pred             HHhh---cchHHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCC------
Q 011277          134 ISAT---TRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIA------  204 (489)
Q Consensus       134 l~~~---~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~------  204 (489)
                      +...   .++++.+++.|++.|+|.|...+....++.+..|+++|++..++.+....+|..+++.++..+....      
T Consensus        84 l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~  163 (410)
T TIGR00885        84 LFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQ  163 (410)
T ss_pred             HHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchh
Confidence            8543   4689999999999999999999999999999999999999999999999999888887765442110      


Q ss_pred             -------------------chhHHHHHHHHHHHHHHHHHhhh--ccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHH
Q 011277          205 -------------------GWWRICFWVSIVPAAILCLAMVF--CAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAE  263 (489)
Q Consensus       205 -------------------~~wr~~f~~~~i~~~~~~~~~~~--~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (489)
                                         ..||++|++.++..++..+...+  .||.++      + ++ ++                 
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~~~~p~~~~------~-~~-~~-----------------  218 (410)
T TIGR00885       164 DVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIMLTKMPALNH------S-DA-KQ-----------------  218 (410)
T ss_pred             hhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc------c-cc-cc-----------------
Confidence                               12799998755544443333322  333210      0 00 00                 


Q ss_pred             HHhhccCCCCcchhHHHhhhccchhHHHHHHHHHHHHhhhhHHHHHHhHHHHHHhc--CCCcch---HHHHHHHHHHHHH
Q 011277          264 LSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSA--GLSSGL---ANVFVGIANLLGS  338 (489)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~---~~~~~~i~~~~g~  338 (489)
                              .......++.+++++++......+++......    ...+.+......  +.+.+.   ..........+|.
T Consensus       219 --------~~~~~~~~~~~~~~~~~~~~l~~f~yvg~e~~----~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR  286 (410)
T TIGR00885       219 --------ISFSASLSRLARIRHYREGVIAQFFYVGVQIM----CWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISR  286 (410)
T ss_pred             --------ccchhhHHHHHhChhHHHHHHHHHHHHHHHHH----HHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHH
Confidence                    00001123345555555544444443332221    112222222222  222221   1222335667899


Q ss_pred             HHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhh
Q 011277          339 VVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRA  418 (489)
Q Consensus       339 ~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~  418 (489)
                      ++++++.||+++|+++.+......+.+.+....     ++....+.    +.....+.+ ...|..+....+..+++.+.
T Consensus       287 ~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~-----~~~~~~~~----l~~~glf~s-~~fp~i~sl~~~~~g~~~~~  356 (410)
T TIGR00885       287 FIGTWLISYLAAHKVLMAYAIIGMALCLGSIFA-----GGHVGLYC----LTLCSAFMS-LMFPTIYGIALKGLGQDTKY  356 (410)
T ss_pred             HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHc-----CChHHHHH----HHHHHHHHH-HHHHHHHHHHHhhhhhhhhh
Confidence            999999999999998776655555544433321     11111111    111112222 22356666777888877766


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHh------CCchhhHHHHHH
Q 011277          419 KAMAVCMSVHWVINFFVGLLFLRLLEQL------GPQLLYSIFGTF  458 (489)
Q Consensus       419 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~------g~~~~~~~~~~~  458 (489)
                      .+.+++..+  +++.+.|.+.+.+.|..      +....|.+...+
T Consensus       357 ~s~~l~~~~--~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~~~~  400 (410)
T TIGR00885       357 GAAGLVMAI--IGGGIVPPLQGFIIDMKEIAAAPAVNTSFILPLLC  400 (410)
T ss_pred             hHHHHHHHH--hccchHHHHHHHHHHHhcccccCccchHHHHHHHH
Confidence            666666655  88999999988888843      344556544333

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.92  E-value=9.9e-24  Score=208.12  Aligned_cols=358  Identities=17%  Similarity=0.206  Sum_probs=239.6

Q ss_pred             CCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhcc--hHHHHHHHHHHHhhhcccccc
Q 011277           83 FNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTR--NLIGMLLGRFVVGTGMGLGPT  160 (489)
Q Consensus        83 ~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~--~~~~l~~~R~l~G~g~g~~~~  160 (489)
                      ++.++.+.+++.+.+++|+.+++++.|+++||+|-|+++..+.++.++++++...+.  +++.+++.|++||++.|..++
T Consensus        68 ~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~~~p  147 (466)
T KOG2532|consen   68 YDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGVLFP  147 (466)
T ss_pred             ecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhHHHh
Confidence            334456779999999999999999999999999999999999999999999987765  445678999999999999999


Q ss_pred             cccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccC-CchhHHHHHHHHHHHHHHHHHh-hhccCChHHHHhc
Q 011277          161 VAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEI-AGWWRICFWVSIVPAAILCLAM-VFCAESPHWLYKK  238 (489)
Q Consensus       161 ~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~-~~~wr~~f~~~~i~~~~~~~~~-~~~~Esp~~l~~~  238 (489)
                      ....+.+.|.|++||++..++...+..+|.+++..+++.+.+. .| |+.+|++.++.+++..+++ ++..|+|.-   +
T Consensus       148 a~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~G-W~sifY~~g~~g~i~~~~w~~~~~d~P~~---h  223 (466)
T KOG2532|consen  148 AIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLG-WPSIFYVFGIVGLIWFILWFLFYSDSPSK---H  223 (466)
T ss_pred             hhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCC-CchHHHHHHHHHHHHHHHHHHHhcCCccc---C
Confidence            9999999999999999999999999999988888777777666 56 7999999777777665554 455666642   1


Q ss_pred             CCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHHHHHHHHHHHhhhhHHHHHHhHHHHHHh
Q 011277          239 GRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKS  318 (489)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (489)
                      .+..+  ++++++.+..          ..+..++....++++++++++.+..+++.+.............+.|..++++.
T Consensus       224 ~~is~--~El~~I~~~k----------~~~~~~~~~~vP~~~i~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f  291 (466)
T KOG2532|consen  224 PNISE--KELKYIEKGK----------SEAHVKKKPPVPYKAILTSPPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGF  291 (466)
T ss_pred             CCCCH--HHHHHHHhcc----------cccccCCCCCCCHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCC
Confidence            12111  1222221110          00111111467899999999988887776665444333333333343333333


Q ss_pred             cCCCcchHHHHHHHHHHHHHHHHHHHhhhcCCc--------hhH-HHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHH
Q 011277          319 AGLSSGLANVFVGIANLLGSVVAMVLMDKLGRK--------ALL-QWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGM  389 (489)
Q Consensus       319 ~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr--------~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (489)
                      .-.+.|+......+...+..+++|.++||+-+|        ++. .+++.+.++.++.+...     +.... +..+..+
T Consensus       292 ~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~-----~~~~~-~~a~~~l  365 (466)
T KOG2532|consen  292 DVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFT-----SDEHR-LLAVILL  365 (466)
T ss_pred             ChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeec-----CCCcc-hHHHHHH
Confidence            333467777788888999999999999998663        111 12233333322222211     11111 1111111


Q ss_pred             HHHHHHHhcCccccccccccccC-CchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH---HhCCchhhHHHHHHHHHHHHH
Q 011277          390 LMFVLTFALGAGPVPSLLLPEIF-PSRIRAKAMAVCMSVHWVINFFVGLLFLRLLE---QLGPQLLYSIFGTFCLMAVAF  465 (489)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~~~e~~-p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~g~~~~~~~~~~~~~~~~~~  465 (489)
                      .+ ..++. |.... ..+.+-.- -+++.+..+|+.+.+..+.+++.|.+.+.+..   .-.|...|.+.+++.++..++
T Consensus       366 ~~-~~~~~-g~~~~-Gf~~~~~~~apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~  442 (466)
T KOG2532|consen  366 TI-AIGLS-GFNIS-GFYKNHQDIAPQHAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNII  442 (466)
T ss_pred             HH-HHHHc-ccchh-hhHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchh
Confidence            11 11111 11111 11222222 46899999999999999999999998877663   234667888888887777654

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.92  E-value=9.3e-23  Score=201.39  Aligned_cols=362  Identities=13%  Similarity=0.137  Sum_probs=212.0

Q ss_pred             HHHhhhhccceeeccchhh-hhhhcCCCCchhHHHHHHHH-HHHHHHHHHHhhHhhhhhchhhHHH-HHhHHHHHHHHHH
Q 011277           58 LSSFLFGYHLGVVNEPLES-ISLDLGFNGNTLAEGLVVSM-CLGGAFIGSTLSGWIADGVGRRRAF-QLCALPMIIGASI  134 (489)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~s~-~~~g~~ig~~~~g~l~Dr~GRr~~~-~~~~~~~~i~~~l  134 (489)
                      +..++.+...+...+.+|. +.+|+|.+.+  +.|+..+. ...++.++++..++ +||+|||+.+ ..+.++.+++..+
T Consensus        22 ~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~--~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~   98 (393)
T PRK15011         22 IVAFLTGIAGALQTPTLSIFLTDEVHARPA--MVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTL   98 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCCCHH--HHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHH
Confidence            3356666666666676665 5678887644  46777654 45577777777777 9999999875 4556666677778


Q ss_pred             HhhcchHHHHHHHHHHHhhhcccccccccccccccCCcccc--hhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHH
Q 011277          135 SATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVR--GTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFW  212 (489)
Q Consensus       135 ~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~R--g~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~  212 (489)
                      .+++++++.+++.+.+.|...+...+....++.|+.++++|  +...++.+.+..+|..+++.++..+.+..| ||..|+
T Consensus        99 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~g-w~~~f~  177 (393)
T PRK15011         99 FAWNRNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFS-FTVMYL  177 (393)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcC-hHHHHH
Confidence            88899999876655544444445666777778887776655  345678888899999999999888876667 699998


Q ss_pred             HHHHHHHHHHH-HhhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHH
Q 011277          213 VSIVPAAILCL-AMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVF  291 (489)
Q Consensus       213 ~~~i~~~~~~~-~~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (489)
                      ..++..++..+ ...++||+++    + ++++ .+       .      .   +.. ++            ..+......
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~----~-~~~~-~~-------~------~---~~~-~~------------~~~~~~~~~  222 (393)
T PRK15011        178 SAAVAFIVCGVMVWLFLPSMRK----E-LPLA-TG-------T------L---EAP-RR------------NRRDTLLLF  222 (393)
T ss_pred             HHHHHHHHHHHHHHhhcCccCC----C-Cccc-cc-------c------c---ccc-cc------------ccccHHHHH
Confidence            76555444433 3445677642    0 0000 00       0      0   000 00            001111111


Q ss_pred             HHHHHHHHHhhhhHHHHHHhHHHHH-HhcCCCc---chHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHH
Q 011277          292 IGSTLFALQQLSGINAIFYFSSSVF-KSAGLSS---GLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAI  367 (489)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~  367 (489)
                      ........    .......+.+..+ +..+.+.   +.......+..+++.++.|+++||+|||+.+..+.....+....
T Consensus       223 ~~~~~~~~----~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~  298 (393)
T PRK15011        223 VICTLMWG----TNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAG  298 (393)
T ss_pred             HHHHHHHH----HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHH
Confidence            11111111    1111112223222 3334443   33334444566778899999999999998776554433332222


Q ss_pred             HHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 011277          368 QVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLG  447 (489)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g  447 (489)
                      ....      +.....  +....+..+.++... +....+..|.+|+ .|+++.++.+...+++..+++.+.+.+.+..+
T Consensus       299 ~~~~------~~~~~~--l~~~~l~~~~~g~~~-~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g  368 (393)
T PRK15011        299 MLMA------HSPAIL--LGLQLLNAIYIGILG-GIGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEIWN  368 (393)
T ss_pred             HHHH------hhHHHH--HHHHHHHHHHHHHHH-HHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            1111      111111  111111111111111 1223456899885 59999999998899999999999888888888


Q ss_pred             CchhhHHHHHHHHHHHHHHHhhcccC
Q 011277          448 PQLLYSIFGTFCLMAVAFVKRNVVET  473 (489)
Q Consensus       448 ~~~~~~~~~~~~~~~~~~~~~~~~et  473 (489)
                      +...+.+.++++++..+.. ...|||
T Consensus       369 ~~~~~~~~~~~~~~~~~~~-~~~~~~  393 (393)
T PRK15011        369 YHAVFWFALVMIIATLFCL-LRIKDV  393 (393)
T ss_pred             hHHHHHHHHHHHHHHHHHH-HhhcCC
Confidence            8777766666666555444 455654

>TIGR00889 2A0110 nucleoside transporter

Probab=99.91  E-value=9.6e-22  Score=195.15  Aligned_cols=370  Identities=14%  Similarity=0.121  Sum_probs=222.6

Q ss_pred             hhhhccceeeccchh-hhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchh-hHHHHHhHHHHHHHHHHHhhc
Q 011277           61 FLFGYHLGVVNEPLE-SISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGR-RRAFQLCALPMIIGASISATT  138 (489)
Q Consensus        61 ~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GR-r~~~~~~~~~~~i~~~l~~~~  138 (489)
                      +.+....++..+.++ .+.+++|++.  .+.|++.+.+.++..++++++|.++||+|| |+++..+.++..++..+..+.
T Consensus        12 ~~~~~~~~~~~~~l~~~l~~~~g~s~--~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~~   89 (418)
T TIGR00889        12 FLQWFIWGSWLVTLGSYMSKTLHFSG--AEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQV   89 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHh
Confidence            333334444444444 4456677764  467999999999999999999999999965 888888888888888888899


Q ss_pred             chHHHHHHHHHHHhhhcccccccccccc----c----ccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHH
Q 011277          139 RNLIGMLLGRFVVGTGMGLGPTVAALYV----T----EVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRIC  210 (489)
Q Consensus       139 ~~~~~l~~~R~l~G~g~g~~~~~~~~~i----~----e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~  210 (489)
                      ++++.+.+.|++.|++.+...+......    .    |......|.+..+.      +|..+++++++.+..... |+. 
T Consensus        90 ~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G~------lG~~ig~~l~g~l~~~~~-~~~-  161 (418)
T TIGR00889        90 TTPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMGT------IGFIAAMWAVSLLDIELS-NIQ-  161 (418)
T ss_pred             cCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeehh------HHHHHHHHHHHHhcccch-hHH-
Confidence            9999999999999998766555443332    1    33333345555542      455555555544422222 454 


Q ss_pred             HHHHHHHHHHHHHHhhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHH
Q 011277          211 FWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVV  290 (489)
Q Consensus       211 f~~~~i~~~~~~~~~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (489)
                      |++.++..++..+..+++||+|+-   +++.++.   .++                      .......+.++++.+...
T Consensus       162 f~~~~~~~~~~~~~~~~~~e~~~~---~~~~~~~---~~~----------------------~~~~~~~~~~k~~~~~~~  213 (418)
T TIGR00889       162 LYITAGSSALLGVFALTLPDIPVA---KSTAKMS---IKV----------------------MLGLDAFILFKNKRMAIF  213 (418)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCCC---ccccccC---HHH----------------------HhhhhHHHHhcCCCeeeH
Confidence            444434444444455677887530   1110000   000                      000012234455555444


Q ss_pred             HHHHHHHHHHhhhhHHHHHHhHHHHHHhcCC-----------CcchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhH
Q 011277          291 FIGSTLFALQQLSGINAIFYFSSSVFKSAGL-----------SSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFF  359 (489)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~  359 (489)
                      ....++......    ....+.+...++.+.           ..+.......+...++.+..++++||+|||+++..+.+
T Consensus       214 ~~~~~~~~~~~~----~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~  289 (418)
T TIGR00889       214 FFFSMLLGAPLQ----ITNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLV  289 (418)
T ss_pred             HHHHHHHHhHHH----HHHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence            443333221111    111122222222221           12445555667788888999999999999999888877


Q ss_pred             HHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHH-HHHHHHHHHHHHH
Q 011277          360 SMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCM-SVHWVINFFVGLL  438 (489)
Q Consensus       360 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~-~~~~~~~~~~~~~  438 (489)
                      ..++.........    ......+..+...++.+.++.. ..+....++.|.+|++.|++++|+.+ ....+++.++|.+
T Consensus       290 ~~~v~~~l~~~~~----~~~~~~~~l~l~~~l~g~~~~~-~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l  364 (418)
T TIGR00889       290 AWALRFGFFAYGD----PEYFGYALLFLSMIVYGCAFDF-FNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYIL  364 (418)
T ss_pred             HHHHHHHHHHHcC----cchhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            6666544333211    0111111112222233333222 23444557899999999999999997 5567888999999


Q ss_pred             HHHHHHHh------CCchhhHHHHHHHHHHHHHHHhhcccCCCCC
Q 011277          439 FLRLLEQL------GPQLLYSIFGTFCLMAVAFVKRNVVETKGKS  477 (489)
Q Consensus       439 ~~~l~~~~------g~~~~~~~~~~~~~~~~~~~~~~~~et~~~~  477 (489)
                      .+.+.+..      |+...|.+.+++.++..++..+..||++++-
T Consensus       365 ~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~~~~  409 (418)
T TIGR00889       365 SGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSHNAI  409 (418)
T ss_pred             HHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCcccCC
Confidence            88888874      3567788888887778787788889887653

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.91  E-value=5.4e-22  Score=196.63  Aligned_cols=362  Identities=18%  Similarity=0.117  Sum_probs=223.0

Q ss_pred             hhhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhc-----hhhH-HHHHhHHHHHHHHHH
Q 011277           61 FLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGV-----GRRR-AFQLCALPMIIGASI  134 (489)
Q Consensus        61 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~-----GRr~-~~~~~~~~~~i~~~l  134 (489)
                      +..|...+....++|.+.++.|++.++  .|++......  .+..+++|+++||+     |||+ .+..+.++.+++..+
T Consensus         9 ~~~~~~~~~~~~~~~~~l~~~g~~~~~--ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~   84 (402)
T PRK11902          9 FASGLPLALTSGTLQAWMTVEGLDIQT--IGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAA   84 (402)
T ss_pred             HHHhhhHHHHHHHHHHHHHHcCCCHHH--HHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHH
Confidence            455666677788899999999987654  5666555554  48889999999999     8876 677878888777777


Q ss_pred             Hhhc---chHHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccC-CchhHHH
Q 011277          135 SATT---RNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEI-AGWWRIC  210 (489)
Q Consensus       135 ~~~~---~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~-~~~wr~~  210 (489)
                      .++.   .+++.+.+..++.++..+...+...+++.|+.|+++|+++.++...+..+|.++++.++..+.+. .+ ||..
T Consensus        85 l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~g-w~~~  163 (402)
T PRK11902         85 MAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLG-WGNT  163 (402)
T ss_pred             HHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccC-HHHH
Confidence            6766   45777788888888888888888899999999999999999999999999988887776666553 35 7999


Q ss_pred             HHHHHHHHHHHHHHhhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHH
Q 011277          211 FWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVV  290 (489)
Q Consensus       211 f~~~~i~~~~~~~~~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (489)
                      |++.++..++..+...+.||+++.   +++.++..+                +          ....++++++++.++..
T Consensus       164 f~i~a~~~l~~~l~~~~~~e~~~~---~~~~~~~~~----------------~----------~~~~~~~l~~~~~~~~~  214 (402)
T PRK11902        164 YLLMAGLMLAGALTTLWAPEPEVP---ARPPRSLGE----------------A----------VVGPLRDFFSRRGAWAL  214 (402)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCccc---ccccchhHH----------------H----------HHHHHHHHHhCcCHHHH
Confidence            988655555544445567776431   100000000                0          01124456666666655


Q ss_pred             HHHHHHHHHHhhhhHHHHHHhHHHHHHhcCCCcc---hHHHHHH-HHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHH
Q 011277          291 FIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSG---LANVFVG-IANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMA  366 (489)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~  366 (489)
                      .....++........   .+..+...+..+.+..   +.....+ ++.+++.++++++.||+|+|+.+..+.....+...
T Consensus       215 l~~~~l~~~~~~~~~---~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l  291 (402)
T PRK11902        215 LLLIVLYKLGDAFAG---SLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNL  291 (402)
T ss_pred             HHHHHHHHhHHHHHH---HHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            443333322211111   1111223344555443   2222223 45778999999999999999877665554444433


Q ss_pred             HHHHHhhccCCCchhhHHHHHHHH----HHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 011277          367 IQVAASSSYIPGSASLYLSVGGML----MFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRL  442 (489)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l  442 (489)
                      ........  ++..  +.......    +....+. ...+....++.+.+|.+.+    +....+..++...++.+.+.+
T Consensus       292 ~~~~~~~~--~~~~--~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~G~l  362 (402)
T PRK11902        292 GYWVLAVT--PKHL--WTMALAIGIENLCGGMGTA-AFVALLMALCNRSFSATQY----ALLSALASVGRVYVGPTSGYL  362 (402)
T ss_pred             HHHHHHhc--CCcH--HHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCCCCcHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence            32221111  1111  11111111    1111111 1123344567777776554    444444455555555567788


Q ss_pred             HHHhCCchhhHHHHHHHHHHHHHHHh
Q 011277          443 LEQLGPQLLYSIFGTFCLMAVAFVKR  468 (489)
Q Consensus       443 ~~~~g~~~~~~~~~~~~~~~~~~~~~  468 (489)
                      .+..|+...|.+.+.+++++.+..++
T Consensus       363 ~~~~G~~~~f~~~~~~~~~~~~~~~~  388 (402)
T PRK11902        363 VEAYGWPGFYLMTVVIALPGLALLWL  388 (402)
T ss_pred             HHHhChHHHHHHHHHHHHHHHHHHHH
Confidence            89999988888888777777665543

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.91  E-value=6.8e-22  Score=194.49  Aligned_cols=357  Identities=13%  Similarity=0.052  Sum_probs=227.8

Q ss_pred             HHHhhhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHH----HHhHHHHHHHHH
Q 011277           58 LSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAF----QLCALPMIIGAS  133 (489)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~----~~~~~~~~i~~~  133 (489)
                      +..+......+...|.+|.+.+|+|++  ..+.|++.+.+.++..++++++|+++||+|||...    ..+..++.+  .
T Consensus        11 ~~~~~~~~~~~~~~p~l~~~l~~~g~s--~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~--~   86 (382)
T TIGR00902        11 LGFFGYFCAYGIFLPFFPAWLKGIGLG--EEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAA--A   86 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH--H
Confidence            334444444567788899999999886  44668999999999999999999999999985433    222222222  2


Q ss_pred             HHhhcchHHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHH
Q 011277          134 ISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWV  213 (489)
Q Consensus       134 l~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~  213 (489)
                      .+..+++++.+++.|.++|.+.+...+....+..|+  +++|++..+......++|..+++++++.+.+..| ||..|++
T Consensus        87 ~~~~~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g-~~~~f~~  163 (382)
T TIGR00902        87 FSAGAHNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFD-EQNILAI  163 (382)
T ss_pred             HHHhhhhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcC-hhHHHHH
Confidence            445678999999999999999888888887777654  5778999999999999999999998888877777 6988887


Q ss_pred             HHHHHHHHHHHhhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHHHH
Q 011277          214 SIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIG  293 (489)
Q Consensus       214 ~~i~~~~~~~~~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (489)
                      ......+. +..+..+|+++    +++.++.                         ++.....+..+.+++++++.....
T Consensus       164 ~~~~~~~~-~~~~~~~~~~~----~~~~~~~-------------------------~~~~~~~~~~~~l~~~~~~~~l~~  213 (382)
T TIGR00902       164 LTAGLAFM-LIGFLIKPTIP----PKDAIPE-------------------------DESQGDSAFIALLKNPMNLRFLAA  213 (382)
T ss_pred             HHHHHHHH-HHHHHcCCCCC----CCccccc-------------------------cccccchhHHHHHcChHHHHHHHH
Confidence            54332222 22333344321    0000000                         000011124456666666555443


Q ss_pred             HHHHHHHhhhhHHHHHHhHHHHHHhcCCCc---chHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHH
Q 011277          294 STLFALQQLSGINAIFYFSSSVFKSAGLSS---GLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVA  370 (489)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~  370 (489)
                      .++......    ....+.+...++.|.+.   +.......+..+++..+.+++.||+|+|+.+..+.....+.......
T Consensus       214 ~~l~~~~~~----~~~~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~  289 (382)
T TIGR00902       214 VCLIQGAHA----AYYGFSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGA  289 (382)
T ss_pred             HHHHHHHHH----HHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHh
Confidence            333222211    11122333334455553   44455566778888889999999999999888777766665544332


Q ss_pred             HhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCc
Q 011277          371 ASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSV-HWVINFFVGLLFLRLLEQLGPQ  449 (489)
Q Consensus       371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~g~~  449 (489)
                      ...        .+..+...++..+.++... +....++.+. |++.|++++++.+.. ..++..+++.+.+.+.+..|. 
T Consensus       290 ~~~--------~~~~~~~q~l~g~~~~~~~-~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-  358 (382)
T TIGR00902       290 IEA--------FPLIFLLQILHCGTFAVCH-LAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGA-  358 (382)
T ss_pred             Hhh--------HHHHHHHHHHHHHHHHHHH-HHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-
Confidence            211        1111222233333333322 2234467787 999999999998654 446777888888888888875 


Q ss_pred             hhhHHHHHHHHHHHHHH
Q 011277          450 LLYSIFGTFCLMAVAFV  466 (489)
Q Consensus       450 ~~~~~~~~~~~~~~~~~  466 (489)
                      ..|.+.+.+.+++.++.
T Consensus       359 ~~~~~~~~~~~~~~~~~  375 (382)
T TIGR00902       359 GTFVFMAIIAAAAFFLI  375 (382)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            56777777777665443

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.91  E-value=3e-22  Score=223.78  Aligned_cols=342  Identities=12%  Similarity=0.024  Sum_probs=211.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHH---hHHHHHHHHHHHhhcchHHHHHHHHHHHhhhccccccccccc
Q 011277           89 AEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQL---CALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALY  165 (489)
Q Consensus        89 ~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~---~~~~~~i~~~l~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~  165 (489)
                      ..++..+.+.+++++.+++.|+++||+|||+++..   ..+...+....+...++++.++++|+++|++.+...+...++
T Consensus        53 ~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a~  132 (1140)
T PRK06814         53 LVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYSI  132 (1140)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHHh
Confidence            45788889999999999999999999999998633   223333333444455899999999999999999999999999


Q ss_pred             ccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHHHHHhhhccCChHHHHhcCCHHHHH
Q 011277          166 VTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAE  245 (489)
Q Consensus       166 i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~i~~~~~~~~~~~~~Esp~~l~~~~~~~~~~  245 (489)
                      +.|++|+++|++++++.+++..+|.++|+++++.+.+..+ |++.|+...+..++.++..+++||++.   .+.+.+...
T Consensus       133 l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~  208 (1140)
T PRK06814        133 LPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGN-FVILVALLMGIAVLGWLASLFIPKTGN---AAPDLKIDR  208 (1140)
T ss_pred             hHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHHhhCCCCCC---CCCCCeecc
Confidence            9999999999999999999999999999999998877666 688885555555555555566666531   000000000


Q ss_pred             HHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHHHHHHHHHHHhhhhHHHHHHhHHHHHHhcCCCcch
Q 011277          246 AEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGL  325 (489)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (489)
                      .          .   .++.          ...++.+.+++.++...+...+..+.........+.|....++......++
T Consensus       209 ~----------~---~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~  265 (1140)
T PRK06814        209 N----------I---IRST----------ITLLKYAKADKRIWLAILGISWFWLVGAVVLSQLPLLAKETLGGDENVATL  265 (1140)
T ss_pred             c----------h---HHHH----------HHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHH
Confidence            0          0   0000          012344455555555544433322221111122222222222222222456


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCC-C-----------chhhHHHHHHHHHHH
Q 011277          326 ANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIP-G-----------SASLYLSVGGMLMFV  393 (489)
Q Consensus       326 ~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~-~-----------~~~~~~~~~~~~~~~  393 (489)
                      .....+++.++|.++.++++|+.++++.+..+.++.++..+.+......... .           ....+......++++
T Consensus       266 ~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  345 (1140)
T PRK06814        266 FLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGWRILIDLFGLA  345 (1140)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhhhcccccHHHHHHHHHHH
Confidence            6777888999999999999988877665555544444433322221000000 0           011112222222233


Q ss_pred             HHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCchhhHHHHHH
Q 011277          394 LTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQ-LGPQLLYSIFGTF  458 (489)
Q Consensus       394 ~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~g~~~~~~~~~~~  458 (489)
                      ++.+.. .+....+..+..|++.||+++|+.+.+..++..+++.+...+.+. .+....+.+.+.+
T Consensus       346 ~~~~~~-~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~  410 (1140)
T PRK06814        346 AAGGLY-IVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALGFSIPWIILFIALA  410 (1140)
T ss_pred             HHHHHh-HHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence            322222 223445788999999999999999999999888888877666543 3333444444433

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.91  E-value=8.6e-22  Score=196.41  Aligned_cols=367  Identities=18%  Similarity=0.102  Sum_probs=203.1

Q ss_pred             eeeccchhhhhh-hcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhh---cchHH-
Q 011277           68 GVVNEPLESISL-DLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISAT---TRNLI-  142 (489)
Q Consensus        68 ~~~~~~~~~i~~-~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~---~~~~~-  142 (489)
                      +...+.+|...+ ++|++.  .+.|+..+.+.++..++++++|+++||+|||+++.++..+..++......   ++... 
T Consensus        27 ~~~~~~~~~~l~~~~g~s~--~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (420)
T PRK09528         27 SSWFSFFPIWLHDINGLSG--TDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIYVFAPLLQY  104 (420)
T ss_pred             HHHHHHHHHHHHHhcCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555555544 477764  46789999999999999999999999999999998876665554332211   11110 


Q ss_pred             HHHHHHHHHhhhcccccccccccccccCC--cccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHH
Q 011277          143 GMLLGRFVVGTGMGLGPTVAALYVTEVSP--PFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAI  220 (489)
Q Consensus       143 ~l~~~R~l~G~g~g~~~~~~~~~i~e~~~--~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~i~~~~  220 (489)
                      ....+.++.++..+.........+.++.+  +++||+..+.......+|..+++.+++.+.+. + |++.|++..+..++
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-~-~~~~f~~~~~~~~~  182 (420)
T PRK09528        105 NILLGAIVGGIYLGFGFLAGAGAIEAYIERVSRRSGFEYGRARMWGSLGWALCAFIAGILFNI-N-PQINFWLGSGSALI  182 (420)
T ss_pred             HHHHHHHHHHHHhhhhhccchhhhhhHHHHHHhhccccchhhHHhhhHHHHHHHHHHHHHHhc-C-chHhHHHHHHHHHH
Confidence            01122233333333222222222233322  34566677777777778887787777766543 4 68999886655555


Q ss_pred             HHHHhhhc-cCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHHHHHHHHHH
Q 011277          221 LCLAMVFC-AESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFAL  299 (489)
Q Consensus       221 ~~~~~~~~-~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (489)
                      ..+..++. +|.++-       ++.+++ ++                 ++.+........+.++++.++...+.......
T Consensus       183 ~~~~~~~~~~~~~~~-------~~~~~~-~~-----------------~~~~~~~~~~~~~~l~~~~~~~l~l~~~~~~~  237 (420)
T PRK09528        183 LLVLLFFAKPDAPST-------AKVANA-LG-----------------ANASAVSLKDALALLKLPKFWFLVLYVIGVAC  237 (420)
T ss_pred             HHHHHhcccccccch-------hhhccc-hh-----------------cccccccHHHHHHHccCCCeEeehHHHHHHHH
Confidence            44444333 332210       000000 00                 00000011123345555655443332212111


Q ss_pred             HhhhhHHHHHHhHHHHHHhcCCC---cchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccC
Q 011277          300 QQLSGINAIFYFSSSVFKSAGLS---SGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYI  376 (489)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~  376 (489)
                      .........+.|..+.+...+.+   .+.......+...++.++.|++.||+|+|+.+..+..+..+...+....     
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~-----  312 (420)
T PRK09528        238 FYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFA-----  312 (420)
T ss_pred             HHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhc-----
Confidence            11111111223333333322332   2344555567778999999999999999998877766655544443221     


Q ss_pred             CCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHhCCchhhHHH
Q 011277          377 PGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAV-CMSVHWVINFFVGLLFLRLLEQLGPQLLYSIF  455 (489)
Q Consensus       377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~  455 (489)
                      .+..  .+ +....+....++.. .+....+..|.+|++.|++..+. .+....+++.+++.+.+.+.|..|+...|.++
T Consensus       313 ~~~~--~~-~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~  388 (420)
T PRK09528        313 TGPL--EV-SILKLLHAFEVPFL-LVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLIL  388 (420)
T ss_pred             ccHH--HH-HHHHHHHHHHHHHH-HHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHH
Confidence            1111  11 11111222222111 12233467888999999988766 45667788889999989999988988888888


Q ss_pred             HHHHHHHHHHHHhhccc
Q 011277          456 GTFCLMAVAFVKRNVVE  472 (489)
Q Consensus       456 ~~~~~~~~~~~~~~~~e  472 (489)
                      +++.++..++....+++
T Consensus       389 ~~~~~i~~~~~~~~~~~  405 (420)
T PRK09528        389 GGIVLLFTLISVFTLSG  405 (420)
T ss_pred             HHHHHHHHHHHHHHhcC
Confidence            88777666655555554

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.90  E-value=6.6e-21  Score=187.54  Aligned_cols=350  Identities=13%  Similarity=0.092  Sum_probs=216.6

Q ss_pred             hccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhh----HHHHHhHHHHHHHHHHHhhcc
Q 011277           64 GYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRR----RAFQLCALPMIIGASISATTR  139 (489)
Q Consensus        64 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr----~~~~~~~~~~~i~~~l~~~~~  139 (489)
                      ....+.+.+.+|.+.+|+|.+.  .+.|+..+.+.++..++++++|+++||+|||    +.+.+...+  ........++
T Consensus        17 ~~~~g~~~p~l~~~l~~~g~s~--~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~--~~~~~~~~~~   92 (382)
T PRK11128         17 FFAYGVFLPFWSVWLKGQGYTP--ETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLL--FAVAFWFGAH   92 (382)
T ss_pred             HHHHHHHhhhHHHHHHhcCCCH--HHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHH--HHHHHHHhcc
Confidence            3445678888898999988764  4578999999999999999999999999994    333222221  1222334568


Q ss_pred             hHHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHH
Q 011277          140 NLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAA  219 (489)
Q Consensus       140 ~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~i~~~  219 (489)
                      +++.+++.|++.|++.+...+...+++.|+  +++|++..+.......+|..+||+++..+.+..+ ||..|+..++..+
T Consensus        93 ~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g-~~~~f~~~~~~~~  169 (382)
T PRK11128         93 SFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFG-EQAILWILTAGVA  169 (382)
T ss_pred             cHHHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcC-hhHHHHHHHHHHH
Confidence            899999999999999888888777777766  4568888888888889999999999988877767 6999887654444


Q ss_pred             HHHHHhhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHHHHHHHHHH
Q 011277          220 ILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFAL  299 (489)
Q Consensus       220 ~~~~~~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (489)
                      +..+...+.||.++    +++.++                          ..+....++++.++++.++.......+...
T Consensus       170 ~~~~~~~~~~~~~~----~~~~~~--------------------------~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~  219 (382)
T PRK11128        170 SMLLGQLLRPTIMP----QGESRQ--------------------------QESAGWPAWKALLKEPTVWRFLLCVSLLQG  219 (382)
T ss_pred             HHHHHHHccCCCCC----cccccc--------------------------ccccccchHHHHHcChhHHHHHHHHHHHHH
Confidence            33333333444311    000000                          000011235566776666655443333322


Q ss_pred             HhhhhHHHHHHhHHHHHHhcCCCc---chHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccC
Q 011277          300 QQLSGINAIFYFSSSVFKSAGLSS---GLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYI  376 (489)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~  376 (489)
                      ....    ...+.+...++.+.+.   +.......++.+++.++.+++.||+++|+.+..+....++.........    
T Consensus       220 ~~~~----~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~----  291 (382)
T PRK11128        220 SHAA----YYGFSAIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTT----  291 (382)
T ss_pred             HhHh----HHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhh----
Confidence            2111    1112222234455443   3444455567778888899999999999988777666555443332111    


Q ss_pred             CCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHH-HHHHHHHHHHHHHHHHHhCCchhhHHH
Q 011277          377 PGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVH-WVINFFVGLLFLRLLEQLGPQLLYSIF  455 (489)
Q Consensus       377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~g~~~~~~~~  455 (489)
                          ..+..+...++.++++... .+....+..+. |++++++.++..+.+. .++..++|.+.+.+.+..|. ..+...
T Consensus       292 ----~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~-~~~~~~  364 (382)
T PRK11128        292 ----ALPWLIVIQILHCGTFTVC-HLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGA-GVFWVM  364 (382)
T ss_pred             ----hHHHHHHHHHHHHHHHHHH-HHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHH
Confidence                1112222233333333332 23333456676 5667788888876554 34557788888888888775 455555


Q ss_pred             HHHHHHHHHH
Q 011277          456 GTFCLMAVAF  465 (489)
Q Consensus       456 ~~~~~~~~~~  465 (489)
                      +.+.+.+...
T Consensus       365 ~~~~~~~~~~  374 (382)
T PRK11128        365 ALVALPALFI  374 (382)
T ss_pred             HHHHHHHHHH
Confidence            5555544433

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.89  E-value=2e-20  Score=187.13  Aligned_cols=358  Identities=19%  Similarity=0.193  Sum_probs=208.3

Q ss_pred             eeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhcchHHHHHHHH
Q 011277           69 VVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGR  148 (489)
Q Consensus        69 ~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l~~~R  148 (489)
                      ..+..++.+..|+|-+.+   ..|+.+...++.+++.++.|.|+|.||||.+++.+.++..+|++.++.++|...++++-
T Consensus        62 ~~a~~l~~I~~diG~~~~---~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~~~~iag~  138 (599)
T PF06609_consen   62 LPASILPYINADIGGSDN---WSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNMNTFIAGM  138 (599)
T ss_pred             ccHHHHHHHHHhcCCCcc---chHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcHHHHHHHH
Confidence            345567889999886533   46888999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHHHHH--hh
Q 011277          149 FVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLA--MV  226 (489)
Q Consensus       149 ~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~i~~~~~~~~--~~  226 (489)
                      .+.|+|.|.... ....++|..|.+.|+....+...........++.++..+....+ |||.|++..+...+.++.  ++
T Consensus       139 ~l~GvgaG~~~~-~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~-WRw~~~~~~i~~~i~~vl~~~f  216 (599)
T PF06609_consen  139 VLYGVGAGVQEL-AALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSG-WRWIFYIFIIWSGIALVLIFFF  216 (599)
T ss_pred             HHHHHhhHHHHH-HHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCC-cchHHHHHHHHHHHHHHHHHHH
Confidence            999999887764 45568999999999877666555444444445555544444445 799999876654444333  23


Q ss_pred             hccCChHHHHhcCC---HHHHHHHHHHHh------------------CC--CchhH--HHH----------HHHhhccC-
Q 011277          227 FCAESPHWLYKKGR---TAEAEAEFEKLL------------------GG--SHVKS--SLA----------ELSKLDRG-  270 (489)
Q Consensus       227 ~~~Esp~~l~~~~~---~~~~~~~~~~~~------------------~~--~~~~~--~~~----------~~~~~~~~-  270 (489)
                      +.|.+.+  ..+++   ..+.-++++.+.                  +.  ...++  ...          -.--.+.. 
T Consensus       217 Y~PP~~~--~~~~~~~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa~lviG~~~Lv~F~~wE~~~  294 (599)
T PF06609_consen  217 YFPPPRA--QLHGRKLSKREQLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHVIAPLVIGFVLLVAFVVWEWFG  294 (599)
T ss_pred             hCCCchh--hhccccCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhHHHHHHHHHHHHHhhhhc
Confidence            3443322  21221   122222232210                  00  00000  000          00000000 


Q ss_pred             CCCcchhHHHhhhc-cchhHHHHHHHHHHHHhhhhHHHHHHhHHHHHHhcCC------CcchHHHHHHHHHHHHHHHHHH
Q 011277          271 DDGDIVKFEELLYG-RHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGL------SSGLANVFVGIANLLGSVVAMV  343 (489)
Q Consensus       271 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~i~~~~g~~~~g~  343 (489)
                      ...+..--.+++++ |.+....+..++....   .+....+|.+......+.      ..++...+.+.+..+|.++.+.
T Consensus       295 ~~~~Pl~P~~Lf~~~r~~~~~lvi~fi~G~~---~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~  371 (599)
T PF06609_consen  295 APKDPLFPHRLFKDRRGFAALLVISFISGMN---FFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGL  371 (599)
T ss_pred             cCCCCcCCHHHhccchHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHH
Confidence            00011112234544 2222222222222211   122223444433322222      2456677788888899999999


Q ss_pred             HhhhcCC-chhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHH
Q 011277          344 LMDKLGR-KALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMA  422 (489)
Q Consensus       344 l~dr~gr-r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~  422 (489)
                      +..+++| |..++.+...+.+.+.++.....   .+.. .......+..+++++.  .. ...+...-..|.+.-+++.|
T Consensus       372 l~~~ir~~Kw~li~~~~~~ta~~Gama~~~~---~n~~-~~i~~~~l~g~giG~~--~~-~~~~~~ql~~p~~~ig~a~g  444 (599)
T PF06609_consen  372 LFSKIRHIKWQLIFGSVLMTAFCGAMAAVRP---DNKN-AAIAFLVLAGFGIGGI--LV-PAIVIAQLIVPDEDIGTATG  444 (599)
T ss_pred             HHHHccchhHHHHHHHHHHHHHHHHHHHccC---CCcc-hHHHHHHHHHHhHHHH--HH-HHHHeeEeeeCchHHHHHHH
Confidence            9988877 44555665555554444332211   1111 1111111222222221  11 22234455678999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 011277          423 VCMSVHWVINFFVGLLFLRLL  443 (489)
Q Consensus       423 ~~~~~~~~~~~~~~~~~~~l~  443 (489)
                      +..+++.+|+.++..++...+
T Consensus       445 L~~s~R~~GGsIg~aIy~~I~  465 (599)
T PF06609_consen  445 LTGSIRSIGGSIGYAIYNAIF  465 (599)
T ss_pred             HHHHHHHHhhHHHHHHHHHHH
Confidence            999999999988887765544

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>TIGR00901 2A0125 AmpG-related permease

Probab=99.89  E-value=1.8e-21  Score=189.81  Aligned_cols=328  Identities=15%  Similarity=0.072  Sum_probs=195.7

Q ss_pred             ceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhc-----hhhHHH-HHhHHHHHHHHHHHhhc--
Q 011277           67 LGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGV-----GRRRAF-QLCALPMIIGASISATT--  138 (489)
Q Consensus        67 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~-----GRr~~~-~~~~~~~~i~~~l~~~~--  138 (489)
                      ..+.++.+|.+.+|+|++.+  +.++.... .+...+ .+++|+++||+     ||||.+ +.+.++.++...+.++.  
T Consensus         4 ~~~~~~~~~~~~~~~g~s~~--~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~   79 (356)
T TIGR00901         4 LGLVGNTLPYWLRSKNVSLK--TIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVP   79 (356)
T ss_pred             chhHHhHHHHHHHHcCCCHH--HHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCc
Confidence            34567788999999998765  44555433 344444 89999999998     899975 56677777776666666  


Q ss_pred             -chHHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCch-------hHHH
Q 011277          139 -RNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGW-------WRIC  210 (489)
Q Consensus       139 -~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~-------wr~~  210 (489)
                       .+.+.+....++.+++.+...+...+++.|++|+++|+++.++...+..+|.++++.++..+.+..+.       ||..
T Consensus        80 ~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~  159 (356)
T TIGR00901        80 STDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYI  159 (356)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHH
Confidence             45556677788888888888888888999999999999999999999999999888887666554441       7999


Q ss_pred             HHHHHHHHHHHHHHhh-hccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhH
Q 011277          211 FWVSIVPAAILCLAMV-FCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRV  289 (489)
Q Consensus       211 f~~~~i~~~~~~~~~~-~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (489)
                      |++.++..++..+..+ ..||+++.   +.+.++..+.                          ....++++++++..+.
T Consensus       160 f~i~ai~~l~~~~~~~~~~~e~~~~---~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~  210 (356)
T TIGR00901       160 FFWTALLILPGLLVTLFLAKEPQED---ASVPKPLTQA--------------------------VLKPIREFFQRKNMIQ  210 (356)
T ss_pred             HHHHHHHHHHHHHHHHHhccCCCcc---cccchhHHHH--------------------------HHHHHHHHHHhcCchH
Confidence            9887666555544433 34664220   0000000000                          0012333444444222


Q ss_pred             HHHHHHHHHHHhhhhHHHHHHhHHHHHHhcCCCcch---HHHHHH-HHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHH
Q 011277          290 VFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGL---ANVFVG-IANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSM  365 (489)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~  365 (489)
                      .........+.... ......+.+...++.+.+...   .....+ +..+++.++++++.||+|||+.+..+.++.++..
T Consensus       211 ~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~  289 (356)
T TIGR00901       211 ALLLLLLIVLYKLG-DSAATVLTTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTN  289 (356)
T ss_pred             HHHHHHHHHHHHHH-HHHHHHHHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence            21111111111111 111112222223335555433   333333 4667899999999999999988877766665554


Q ss_pred             HHHHHHhhccC-C--CchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHH
Q 011277          366 AIQVAASSSYI-P--GSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHW  429 (489)
Q Consensus       366 ~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~  429 (489)
                      .+......... .  +....+......++..++... ..+....+..|.+|+++|++.+|+.+++.+
T Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~  355 (356)
T TIGR00901       290 AGFVWLASNGHHDGITFPHLLMLFLTITLEAVTGGL-GTVAFVAFLSKLSNPKFGATQMALLSSLSA  355 (356)
T ss_pred             HHHHHHHhcCcccccccchHHHHHHHHHHHHHHhHH-HHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence            43332211100 0  001111122122222222221 234556689999999999999999887654

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.89  E-value=1e-20  Score=187.18  Aligned_cols=366  Identities=17%  Similarity=0.138  Sum_probs=214.9

Q ss_pred             Hhhhhccceeeccchhhhh-hhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHh--
Q 011277           60 SFLFGYHLGVVNEPLESIS-LDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISA--  136 (489)
Q Consensus        60 ~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~--  136 (489)
                      .++.....+.+.+.+|... +++|.+  ..+.++..+.+.++..+++++.|+++||+|||+.+..+.....++.....  
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~g~s--~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~   88 (396)
T TIGR00882        11 FFLYFFIMSAYFPFFPIWLHDVNGLS--KTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIY   88 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHH
Confidence            3343344445566666554 456765  44678999999999999999999999999999999887776655433221  


Q ss_pred             -hc-----chHHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHH
Q 011277          137 -TT-----RNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRIC  210 (489)
Q Consensus       137 -~~-----~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~  210 (489)
                       ..     .....+++.|++.|++.+...+....+..|..+  ++++..+.......+|..+++.+++.+.+. + ||.+
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~-~-~~~~  164 (396)
T TIGR00882        89 VFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSR--NSNFEYGKARMFGCVGWALCASIAGILFSI-D-PQIV  164 (396)
T ss_pred             HhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhh--hcccccchhhhhcccHHHHHHHHHhhhhcc-C-chHH
Confidence             11     123345667899999888877777777666533  334455666666678888888887766543 4 7999


Q ss_pred             HHHHHHHHHHHHHHhhh-ccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhH
Q 011277          211 FWVSIVPAAILCLAMVF-CAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRV  289 (489)
Q Consensus       211 f~~~~i~~~~~~~~~~~-~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (489)
                      |++..+..++..+..+. .||+|+.       ++.++.    .             + .+.++.+..+..+.+++++++.
T Consensus       165 f~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~----~-------------~-~~~~~~~~~~~~~~l~~~~~~~  219 (396)
T TIGR00882       165 FWLGSGFALILMLLLMFAKPKAPSS-------ATVANA----L-------------G-ANASAFSLKLALELFRQRKFWM  219 (396)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCchh-------hhhhcc----c-------------c-cccCCCCHHHHHHHHcCCcHHH
Confidence            98865555554433333 3443321       000000    0             0 0001111224556677776554


Q ss_pred             HHHHHHHHHHHhhhhHHHHHHhHHHHHHhcCCC---cchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHH
Q 011277          290 VFIGSTLFALQQLSGINAIFYFSSSVFKSAGLS---SGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMA  366 (489)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~  366 (489)
                      .....................|....++..+.+   .+.......+...++....+++.||+|||+.+..+....++...
T Consensus       220 ~~l~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~  299 (396)
T TIGR00882       220 FVLYVVGVACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRII  299 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHH
Confidence            433222211111111111222323322222222   23344445567777888899999999999988777665555443


Q ss_pred             HHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 011277          367 IQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAV-CMSVHWVINFFVGLLFLRLLEQ  445 (489)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~-~~~~~~~~~~~~~~~~~~l~~~  445 (489)
                      +....     .+..   ......++...+.... ......+..|..|++.++++.+. .+....+++.+++.+.+.+.+.
T Consensus       300 ~~~~~-----~~~~---~~~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~  370 (396)
T TIGR00882       300 GSSFA-----TTAL---EVVILKMLHAFEVPFL-LVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDS  370 (396)
T ss_pred             HHHhc-----CChH---HHHHHHHHHHHHHHHH-HHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHh
Confidence            32211     1111   1111122222222211 11223356777888888887776 5677888999999999999998


Q ss_pred             hCCchhhHHHHHHHHHHHHH
Q 011277          446 LGPQLLYSIFGTFCLMAVAF  465 (489)
Q Consensus       446 ~g~~~~~~~~~~~~~~~~~~  465 (489)
                      .|+...|.+.+++.++....
T Consensus       371 ~G~~~~f~~~~~~~~i~~~~  390 (396)
T TIGR00882       371 IGFQGAYLVLGCIVLLFTLI  390 (396)
T ss_pred             cccHHHHHHHHHHHHHHHHH
Confidence            99888888888777666544

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.89  E-value=2.6e-22  Score=207.54  Aligned_cols=298  Identities=16%  Similarity=0.172  Sum_probs=192.2

Q ss_pred             HHHHHHhhhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHH
Q 011277           55 VATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASI  134 (489)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l  134 (489)
                      ..++..+......+..+..++++.++|+++..  +.|++.+.+.+|++++.++.++++||+|||+.+.++.+++++++++
T Consensus        37 ~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~--~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll  114 (633)
T TIGR00805        37 LLTCAQLQGLLYNGLVNSSLTTIERRFKLSTS--SSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFL  114 (633)
T ss_pred             HHHHHHHHHHHHHHHHHhhchhhhhhhCCCCC--cceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHH
Confidence            33444455556667888899999999998755  4689999999999999999999999999999999999999999999


Q ss_pred             Hhhcc---------------------------------------------------hHHHHHHHHHHHhhhccccccccc
Q 011277          135 SATTR---------------------------------------------------NLIGMLLGRFVVGTGMGLGPTVAA  163 (489)
Q Consensus       135 ~~~~~---------------------------------------------------~~~~l~~~R~l~G~g~g~~~~~~~  163 (489)
                      .++.+                                                   .+..++++|+++|+|.+..++...
T Consensus       115 ~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~  194 (633)
T TIGR00805       115 LSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGI  194 (633)
T ss_pred             HhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCc
Confidence            87652                                                   245677899999999999999999


Q ss_pred             ccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCC------------------ch---hHHHHHHHHHHHHHHH
Q 011277          164 LYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIA------------------GW---WRICFWVSIVPAAILC  222 (489)
Q Consensus       164 ~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~------------------~~---wr~~f~~~~i~~~~~~  222 (489)
                      .++.|++|+++|+++.+++..+..+|+.+|+++++.+.+..                  .|   ||..|++.++..++..
T Consensus       195 ~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~  274 (633)
T TIGR00805       195 SYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTS  274 (633)
T ss_pred             hhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999998887654321                  12   6777777666665555


Q ss_pred             HHhhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHHHHHHHHHHHhh
Q 011277          223 LAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQL  302 (489)
Q Consensus       223 ~~~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (489)
                      +..+++||+..-...+.+.++.++...+ .+......   +   ............+++++++.+....+..++..... 
T Consensus       275 v~l~~~p~~lp~~~~~~~~~~~~~~~~~-~~~~~~~~---~---~~~~~~~~~~~~~~Ll~n~~f~~~~l~~~~~~~~~-  346 (633)
T TIGR00805       275 IPFFFFPKALPKEGKRVNVDVHETEKLE-KSEDKSRK---K---NSDITKDFPKIIKRLLCNPIYMLVILAQVIDSLAF-  346 (633)
T ss_pred             HHHHhCccccCCcccccchhhhhhhccc-ccccccch---h---hhhhHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHH-
Confidence            5556666642100000000000000000 00000000   0   00000001123556777776665554444333222 


Q ss_pred             hhHHHHHHhHHHHHH-hcCCCcc---hHHHHHHH-HHHHHHHHHHHHhhhcCC--chhHHHhhHHHHHHH
Q 011277          303 SGINAIFYFSSSVFK-SAGLSSG---LANVFVGI-ANLLGSVVAMVLMDKLGR--KALLQWSFFSMAVSM  365 (489)
Q Consensus       303 ~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~i-~~~~g~~~~g~l~dr~gr--r~~~~~~~~~~~i~~  365 (489)
                         .....+.+..++ +.+.+..   .......+ +.++|.+++|+++||+++  |+.+..+.....++.
T Consensus       347 ---~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~~~~  413 (633)
T TIGR00805       347 ---NGYITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICLSTLSY  413 (633)
T ss_pred             ---HHHHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHHHHHHHH
Confidence               222233343332 3455443   33333333 457899999999999984  455555555444443

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.88  E-value=8.5e-21  Score=191.10  Aligned_cols=138  Identities=15%  Similarity=0.209  Sum_probs=117.1

Q ss_pred             hhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhh-chhhHHHHHhHHHHHHHHHHHhhcchHHH-HHHHHHHHhh
Q 011277           76 SISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADG-VGRRRAFQLCALPMIIGASISATTRNLIG-MLLGRFVVGT  153 (489)
Q Consensus        76 ~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr-~GRr~~~~~~~~~~~i~~~l~~~~~~~~~-l~~~R~l~G~  153 (489)
                      .+.+++|++.++  ..++.+.+.....+..+++|+++|| +|||+++..+.+++.+++++++++.+... +.++|.++|+
T Consensus        40 yl~~~lg~~~~~--a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~~~ll~~~~~l~~i  117 (489)
T PRK10207         40 FFVKQLGFSQEQ--AFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLKPDLIFIALGTIAV  117 (489)
T ss_pred             HHHHHcCCCHHH--HHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHh
Confidence            346678876544  4577777877777778899999999 99999999999999999999999877555 4479999999


Q ss_pred             hcccccccccccccccCCcc--cchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHH
Q 011277          154 GMGLGPTVAALYVTEVSPPF--VRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIV  216 (489)
Q Consensus       154 g~g~~~~~~~~~i~e~~~~~--~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~i  216 (489)
                      |.|...+....+++|.+|++  +|+++.+++.++.++|..+|+.++..+.+..| ||+.|++..+
T Consensus       118 g~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~g-w~~~F~i~~i  181 (489)
T PRK10207        118 GNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFG-YSVTYNLCGA  181 (489)
T ss_pred             ccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhC-hHHHHHHHHH
Confidence            99999999999999999987  45778999999999999999999888888777 6899987643

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.88  E-value=3e-20  Score=187.06  Aligned_cols=160  Identities=14%  Similarity=0.157  Sum_probs=132.3

Q ss_pred             HHHHhhhhccceeeccchhhhhhh---cCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhh-chhhHHHHHhHHHHHHHH
Q 011277           57 TLSSFLFGYHLGVVNEPLESISLD---LGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADG-VGRRRAFQLCALPMIIGA  132 (489)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~i~~~---~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr-~GRr~~~~~~~~~~~i~~  132 (489)
                      ....+...+....+.+.+|.+..+   +|++  +.+.+++.+.+.++..++++++|+++|| +|||+++.++.++.+++.
T Consensus        16 ~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s--~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~   93 (475)
T TIGR00924        16 FFVELWERFSYYGMQGILAVYLVQQAGLGFS--QEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGH   93 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC--HHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHH
Confidence            334445444444455566666543   6665  4467899999999999999999999999 899999999999999999


Q ss_pred             HHHhhcchHHHHHHHHHHHhhhcccccccccccccccCCccc---chhhhhHHHHHHHHHHHHHHHhhcccccCCchhHH
Q 011277          133 SISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFV---RGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRI  209 (489)
Q Consensus       133 ~l~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~---Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~  209 (489)
                      ++.+.+++++.+.++|++.|+|.|...+....+++|++|+++   |+++.+++..+.++|..+|+.++..+.+..+ ||+
T Consensus        94 ~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g-~~~  172 (475)
T TIGR00924        94 FMLAMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYG-YHV  172 (475)
T ss_pred             HHHHhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcC-hHH
Confidence            999999998889999999999999988899999999998765   8889999999999999999999888777667 699


Q ss_pred             HHHHHHHHHH
Q 011277          210 CFWVSIVPAA  219 (489)
Q Consensus       210 ~f~~~~i~~~  219 (489)
                      .|++.++..+
T Consensus       173 ~f~~~~~~~~  182 (475)
T TIGR00924       173 GFNLAAVGMV  182 (475)
T ss_pred             HHHHHHHHHH
Confidence            9987654333

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.87  E-value=2.8e-20  Score=186.75  Aligned_cols=333  Identities=16%  Similarity=0.135  Sum_probs=201.0

Q ss_pred             hhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhh----chhh-HHHHHhHHHHHHHHHHHhhcch------HHH
Q 011277           75 ESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADG----VGRR-RAFQLCALPMIIGASISATTRN------LIG  143 (489)
Q Consensus        75 ~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr----~GRr-~~~~~~~~~~~i~~~l~~~~~~------~~~  143 (489)
                      +.+.+++|++  ..+.|++.+...+..++..++.|+++||    +||| |.++.+.+.++++.+++...++      ...
T Consensus        24 ~~~~~~~g~s--~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~  101 (437)
T TIGR00792        24 FFYTDVLGLS--AAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLVY  101 (437)
T ss_pred             HHHHHccCCC--HHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHHHH
Confidence            3445567775  4456899999999999999999999997    7884 4566777888888777766553      456


Q ss_pred             HHHHHHHHhhhcccccccccccccccC-CcccchhhhhHHHHHHHHHHHHHHHhhcccc-------cCCchhHHHHHHHH
Q 011277          144 MLLGRFVVGTGMGLGPTVAALYVTEVS-PPFVRGTYGAFIQIATCLGLMGSLLIGIPVK-------EIAGWWRICFWVSI  215 (489)
Q Consensus       144 l~~~R~l~G~g~g~~~~~~~~~i~e~~-~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~-------~~~~~wr~~f~~~~  215 (489)
                      +++.+++.+++.+.......++..|.. ++++|++..++......+|..++..+..++.       +..+ ||+.+++.+
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g-~~~~~~i~~  180 (437)
T TIGR00792       102 AYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFG-WFMFALVLA  180 (437)
T ss_pred             HHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccc-HHHHHHHHH
Confidence            677889999888876666677888887 5789999999888777777554433322221       1234 799888765


Q ss_pred             HHHHHHHHH-hhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHHHHH
Q 011277          216 VPAAILCLA-MVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGS  294 (489)
Q Consensus       216 i~~~~~~~~-~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (489)
                      +..++..+. ....+|.++     .+.++.                        +.+.+....+++++++++++......
T Consensus       181 ~l~~~~~~~~~~~~~e~~~-----~~~~~~------------------------~~~~~~~~~~~~l~~~~~~~~~~~~~  231 (437)
T TIGR00792       181 LIGVVSLIICFFGTKERYS-----EIPKNI------------------------EKKLSLKQIFKALFKNDQLLILCLAY  231 (437)
T ss_pred             HHHHHHHHHHHcCCEecCC-----CCCccc------------------------ccCCCHHHHHHHHhCCHHHHHHHHHH
Confidence            555444333 445566531     000000                        00000111234455666665554433


Q ss_pred             HHHHHHhhhhHHHHHHhHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhc
Q 011277          295 TLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSS  374 (489)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~  374 (489)
                      ++.............+|....++ .....+.......++.+++.++.+++.||+|+|+.+..+.....++........  
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~--  308 (437)
T TIGR00792       232 LFYNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAG--  308 (437)
T ss_pred             HHHHHHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcc--
Confidence            33222211111112222222211 111123344455788889999999999999999988887666665544433211  


Q ss_pred             cCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCC-------chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 011277          375 YIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFP-------SRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLG  447 (489)
Q Consensus       375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-------~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g  447 (489)
                         ..  .+......++..++.+. ..+..+.+.+|..|       ++.+|+..|+.+...+++..+++.+.+.+++..|
T Consensus       309 ---~~--~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G  382 (437)
T TIGR00792       309 ---SN--LPLILVLIILAGFGQNF-VTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIG  382 (437)
T ss_pred             ---hh--HHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence               11  11111111222222221 12445556667654       5668999999999999999999999888887665


Q ss_pred             C
Q 011277          448 P  448 (489)
Q Consensus       448 ~  448 (489)
                      +
T Consensus       383 ~  383 (437)
T TIGR00792       383 Y  383 (437)
T ss_pred             C
Confidence            4

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.86  E-value=2e-20  Score=179.84  Aligned_cols=181  Identities=16%  Similarity=0.140  Sum_probs=146.9

Q ss_pred             HHHHHHHHhhhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHH
Q 011277           53 VLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGA  132 (489)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~  132 (489)
                      .+++|+..|+.-+=.+ ...+.|.+.+|+|++.++. .|.+.+.++.+|++.+++.|+++||+|.|+++.++.+.+++.+
T Consensus        29 ~~~lC~fGF~~e~R~n-~s~a~p~L~~elglT~~qv-~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t  106 (511)
T TIGR00806        29 VLYLCFYGFMAQFRPG-ESFITPYLLTVLNFTEETV-TNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVW  106 (511)
T ss_pred             HHHHHHHHHHHHhhch-HHHHHHHHHHHcCCCHHHh-cchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHH
Confidence            4556666666544332 3445678888999986542 6899999999999999999999999999999999999999999


Q ss_pred             HHHhhcchHHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHH
Q 011277          133 SISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFW  212 (489)
Q Consensus       133 ~l~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~  212 (489)
                      ++.++++++..+.+.|++.|++.|+.. ....++..++|+++|+++.++...+..+|.+++++++..+. ..+ ||+.+.
T Consensus       107 ~L~~fa~Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~-s~g-Wr~y~~  183 (511)
T TIGR00806       107 LLLLLGTSVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLV-TLG-WISYST  183 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcC-chhHHH
Confidence            999999999999999999999999999 89999999999999999999999999999888888877644 345 576654


Q ss_pred             H---HHHHHHHHHHHhhhccCChHHHHhc
Q 011277          213 V---SIVPAAILCLAMVFCAESPHWLYKK  238 (489)
Q Consensus       213 ~---~~i~~~~~~~~~~~~~Esp~~l~~~  238 (489)
                      +   ......+.+++.+++|..++-++.+
T Consensus       184 Ln~Isl~s~~~a~~~a~~LP~~~~sl~f~  212 (511)
T TIGR00806       184 LNIISLVFMTFSVFLALFLKRPKRSLFFN  212 (511)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCchhhhhc
Confidence            4   3333444555667788666545444

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.86  E-value=5.7e-20  Score=168.50  Aligned_cols=143  Identities=24%  Similarity=0.270  Sum_probs=118.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhcchHHHHHHHHHHHhhhcccccccccccc
Q 011277           87 TLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYV  166 (489)
Q Consensus        87 ~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i  166 (489)
                      ..-.|.+.|.|.++..+.++.+|.++||+|||+++++|++..++...+.+.+.||..++++|++.|+..|-. .+..+++
T Consensus        67 ~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kgnl-~v~rAii  145 (451)
T KOG2615|consen   67 VFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKGNL-SVIRAII  145 (451)
T ss_pred             chhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCch-HHHHHHH
Confidence            344689999999999999999999999999999999999999999999999999977777799999998765 4677899


Q ss_pred             cccCCcccchhhhhHHHHHHHHHHHHHHHhhccccc---CCchhHHHHH----HHHHHHHH-HHHHhhhccCCh
Q 011277          167 TEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKE---IAGWWRICFW----VSIVPAAI-LCLAMVFCAESP  232 (489)
Q Consensus       167 ~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~---~~~~wr~~f~----~~~i~~~~-~~~~~~~~~Esp  232 (489)
                      +|+.++++|++.++.++.+..+|.++||.+|+.+.+   ..+  +.+|.    +..+.... ..+..+++|||-
T Consensus       146 sdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g--~~p~alP~~~v~i~a~~~v~~~~~~lpETL  217 (451)
T KOG2615|consen  146 SDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISG--SYPFALPCLLVFILAAGDVTFFPWFLPETL  217 (451)
T ss_pred             HhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhc--cCchHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence            999999999999999999999999999999998876   222  12222    22222222 344567889994

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.86  E-value=1.6e-19  Score=181.55  Aligned_cols=371  Identities=18%  Similarity=0.194  Sum_probs=234.0

Q ss_pred             eeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhh-----cchHH
Q 011277           68 GVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISAT-----TRNLI  142 (489)
Q Consensus        68 ~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~-----~~~~~  142 (489)
                      .+...+++-+..++  +.+....+++.....+-..+.+++.|.++||+.||++++.+.++..+...+.+.     ..+.+
T Consensus        27 ~~~~va~~wlv~~l--t~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~~~~  104 (524)
T PF05977_consen   27 WMQTVALAWLVTQL--TGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGLLSPW  104 (524)
T ss_pred             HHHHHHHHHHHHHH--hCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcCCHH
Confidence            33444555555553  455667788888889999999999999999999999999998887665544332     24778


Q ss_pred             HHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHHH
Q 011277          143 GMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILC  222 (489)
Q Consensus       143 ~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~i~~~~~~  222 (489)
                      .+++.-++.|++.+...|...+++.|+.|+++...+.++.++..++..++||.+|+.+....| -.+.|++.++..++..
T Consensus       105 ~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G-~~~~f~inalsfl~~i  183 (524)
T PF05977_consen  105 LLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFFG-AAAAFLINALSFLISI  183 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence            889999999999999999999999999999999999999999999998889988887665555 3677777654444333


Q ss_pred             HHhhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHHHHHHHHHHHhh
Q 011277          223 LAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQL  302 (489)
Q Consensus       223 ~~~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (489)
                      +.....++.+     +.+..+.++..          +   ++          ...++....++..+..+...+++.+...
T Consensus       184 ~~l~~~~~~~-----~~~~~~~e~~~----------~---~l----------~~G~ryv~~~~~l~~~l~~~~~~~l~~~  235 (524)
T PF05977_consen  184 LALLRWKPPP-----PPSSLPRERFF----------S---AL----------REGLRYVRSSPPLRSVLLRSFLFNLFAS  235 (524)
T ss_pred             HHHHHccccc-----cccccchhhhh----------h---hH----------HHHHHHHhcchHHHHHHHHHHHHHHhhh
Confidence            3322222111     00000000000          0   00          0012222233444444333333222211


Q ss_pred             hhHHHHHHhHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhh
Q 011277          303 SGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASL  382 (489)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  382 (489)
                      .....++++..+.++.....-|+.....++|.++|+++.+++.+|+++++++..+.+..+++.+.+....        ..
T Consensus       236 a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~--------~~  307 (524)
T PF05977_consen  236 AVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSP--------SF  307 (524)
T ss_pred             HHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcch--------HH
Confidence            1111222332222222222235677788899999999999999999988887777666665554433221        11


Q ss_pred             HHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHH
Q 011277          383 YLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMA  462 (489)
Q Consensus       383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~  462 (489)
                      +.....+++.+.+.... .....+..-+..|.+.||+..++..++.+.+..++..+.+.+.+..|...++.+.++..++.
T Consensus       308 ~~~~~~l~l~G~~~~~~-~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~  386 (524)
T PF05977_consen  308 WLALIALFLAGAAWIIA-NSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLS  386 (524)
T ss_pred             HHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence            22222222222222221 12233456788899999999999999988888888888888888888887777666555444


Q ss_pred             HHHH-HhhcccCCCCCH
Q 011277          463 VAFV-KRNVVETKGKSL  478 (489)
Q Consensus       463 ~~~~-~~~~~et~~~~~  478 (489)
                      .++. ...+|+.+..+.
T Consensus       387 ~~~~~~~~l~~~~~~d~  403 (524)
T PF05977_consen  387 ALIALRFPLRQGEELDL  403 (524)
T ss_pred             HHHHHHhcCcccccCCC
Confidence            4433 334666555443

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.85  E-value=8e-19  Score=173.34  Aligned_cols=368  Identities=12%  Similarity=0.019  Sum_probs=213.5

Q ss_pred             HHHHHhhhhccceeeccchhhhhhhcCCCCchhHHHHH--HHHHHHHHHHHHHhh-HhhhhhchhhHHHHHhHHHH-HHH
Q 011277           56 ATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLV--VSMCLGGAFIGSTLS-GWIADGVGRRRAFQLCALPM-IIG  131 (489)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~s~~~~g~~ig~~~~-g~l~Dr~GRr~~~~~~~~~~-~i~  131 (489)
                      +....+..|...+...+.+|.+.+|.|.+.+  +.|+.  .+.......+.++++ ++.+||+||||.+++...+. .+.
T Consensus         6 ~~~ly~~~g~~~~~~~p~lp~~l~~~g~~~~--~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~~   83 (390)
T TIGR02718         6 LGLLYLSQGIPIGLAMDALPTLLREDGAPLT--ALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSAC   83 (390)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHcCCCHH--HHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHHH
Confidence            3444477788888889999999999987654  44664  344555555666666 55789999999976665332 211


Q ss_pred             HHHHh-h--cch-HHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchh
Q 011277          132 ASISA-T--TRN-LIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWW  207 (489)
Q Consensus       132 ~~l~~-~--~~~-~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~w  207 (489)
                      ....+ .  ..+ ..+++..-++.++..+...+....+..|..++++++...+....+..+|..+|......+.+..+ |
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~g-w  162 (390)
T TIGR02718        84 LASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKFG-Q  162 (390)
T ss_pred             HHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-H
Confidence            22222 1  222 33444555556566666666777778888888888888888888888888888776666666666 6


Q ss_pred             HHHHHHHHHHHHHHHHHhhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccch
Q 011277          208 RICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHF  287 (489)
Q Consensus       208 r~~f~~~~i~~~~~~~~~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (489)
                      |..|++.+...++..+..++.+|+++    + +.++.++                           +..++++.++++..
T Consensus       163 ~~~f~~~a~l~~~~~~~~~~~~~~~~----~-~~~~~~~---------------------------~~~~~~~~l~~~~~  210 (390)
T TIGR02718       163 RPAFLLVACVPLASLVCVLWLKDRAV----A-SPEAPLA---------------------------RRASLFRFFRRPLA  210 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCCc----C-ccccchh---------------------------hHHHHHHHHcCcCH
Confidence            99998876555544444444443321    0 0000000                           00123445555655


Q ss_pred             hHHHHHHHHHHHHhhhhHHHHHHhHHHHHHhcCCCcch---HHHHHH-HHHHHHHHHHHHHhhhcCCchhHHHhhHHHHH
Q 011277          288 RVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGL---ANVFVG-IANLLGSVVAMVLMDKLGRKALLQWSFFSMAV  363 (489)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i  363 (489)
                      +......++.......    ...+.+..+++.|.+...   .....+ +..+++.+++|++.||+|+|+.+..+....++
T Consensus       211 ~~~~~~~~l~~~~~~~----~~~~~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~  286 (390)
T TIGR02718       211 WSLLALALLSAMTAVS----GFGLSKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGS  286 (390)
T ss_pred             HHHHHHHHHHHHHHHH----HHHHhhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            5444433332221111    111223333445665433   333333 35567788999999999999988776554433


Q ss_pred             HHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCc-hhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 011277          364 SMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPS-RIRAKAMAVCMSVHWVINFFVGLLFLRL  442 (489)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~-~~r~~~~~~~~~~~~~~~~~~~~~~~~l  442 (489)
                      ................  .........+..+..+... +.......+..++ +.+++.+++.+++.+++..++|.+.+.+
T Consensus       287 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l  363 (390)
T TIGR02718       287 LALLWFAQAAFWLAPG--IAVAWSCSAFGSLITGITS-VAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYL  363 (390)
T ss_pred             HHHHHHHHHHcccCCc--HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2222221111110111  1111111111111122111 1222233444554 8999999999999999999999999999


Q ss_pred             HHHhCCchhhHHHHHHHHHHHHH
Q 011277          443 LEQLGPQLLYSIFGTFCLMAVAF  465 (489)
Q Consensus       443 ~~~~g~~~~~~~~~~~~~~~~~~  465 (489)
                      .+..|+...|.+.+.+.+++.+.
T Consensus       364 ~~~~G~~~~f~~~~~~~l~a~~~  386 (390)
T TIGR02718       364 TDRFGYAGGFLSGTVLAVLAILL  386 (390)
T ss_pred             HHHHccHHHHHHHHHHHHHHHHH
Confidence            99888877777776666655443

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.85  E-value=1.2e-20  Score=173.84  Aligned_cols=348  Identities=16%  Similarity=0.122  Sum_probs=229.3

Q ss_pred             hhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhcchHHHHHHHHHHHhhhc
Q 011277           76 SISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGM  155 (489)
Q Consensus        76 ~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l~~~R~l~G~g~  155 (489)
                      ...++...+.++.+.|++.+.+.+...+-+++.|++.||+|+|-.+++++..+...+++.++.++++.++++|.+||+|.
T Consensus        94 ~~~~~~~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgs  173 (464)
T KOG3764|consen   94 SPAEAISLDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGS  173 (464)
T ss_pred             CchhccCccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhH
Confidence            34455555666778899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccccccccccCCccc-chhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHHHHHhhhccCChHH
Q 011277          156 GLGPTVAALYVTEVSPPFV-RGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHW  234 (489)
Q Consensus       156 g~~~~~~~~~i~e~~~~~~-Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~i~~~~~~~~~~~~~Esp~~  234 (489)
                      +.......++++|.+|++. |++++++.-.+.++|.++||++|+.+.+..| .+.+|.+.++..++-..+.+++-|..  
T Consensus       174 A~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~G-k~aPFlVL~~v~Lld~~L~l~vi~p~--  250 (464)
T KOG3764|consen  174 AFADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAG-KSAPFLVLAIVLLLDGALQLLVIEPT--  250 (464)
T ss_pred             HHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcC-CcCcHHHHHHHHHHHHHHHHheeCcc--
Confidence            9999999999999999755 7999999999999999999999999988888 49999987666666555555543321  


Q ss_pred             HHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHHHHHHHHHHHhhhhHH-HHHHhHH
Q 011277          235 LYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGIN-AIFYFSS  313 (489)
Q Consensus       235 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  313 (489)
                         +.+.+                            +..+..+++++++++..... .....++-..+...- ....|-.
T Consensus       251 ---~~~~~----------------------------~~~~~~~~~~Ll~dP~I~~~-agai~~~n~~lafLePtlslwm~  298 (464)
T KOG3764|consen  251 ---EMDPD----------------------------STEQGTPMWSLLMDPYILLI-AGAITFSNSSLAFLEPTLSLWML  298 (464)
T ss_pred             ---ccCcc----------------------------ccccCccHHHHHhCchHhhh-hcchhhccchHHHhCcccHHHHH
Confidence               00000                            01112234455554433221 111111111111110 1111111


Q ss_pred             HHHHhcCCCcchHHHHHHHHHHHHHHHHHHHhhhcCCch--hHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHH
Q 011277          314 SVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKA--LLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLM  391 (489)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  391 (489)
                      +.+...+...|+.+++.++..++|+.+.|.+.||++.-+  ....+.+..++++...-..     ......++...++.+
T Consensus       299 e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~-----~~~~~L~vp~~~l~~  373 (464)
T KOG3764|consen  299 ETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFA-----TSIAQLWVPNFGLGF  373 (464)
T ss_pred             HhccCCCcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhh-----hhHHHHhhhhHHHHH
Confidence            222223345678889999999999999999999999433  2223333333222211111     111122222222221


Q ss_pred             HHHHHhcCccccccccccccCCch---hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHH
Q 011277          392 FVLTFALGAGPVPSLLLPEIFPSR---IRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVA  464 (489)
Q Consensus       392 ~~~~~~~~~~~~~~~~~~e~~p~~---~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~  464 (489)
                      .+...-....|... +..+.-..+   .-+...++....-.++.+++|.+.+.+...+|..|...+.+...+.-..
T Consensus       374 ~i~~~dasl~P~l~-~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~wl~~iig~~n~iyap  448 (464)
T KOG3764|consen  374 GIGLADASLIPTLG-YLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFEWLMTIIGILNLIYAP  448 (464)
T ss_pred             HHHHHHHHHhhhhH-HhcchhhccccceeeeHHHHHHHHHHHhhhccccccchheeehhHHHHHHHHHHHHHHHHH
Confidence            11111112223322 333333334   5677888888877888888998888888899999888888877665543

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.84  E-value=2.7e-18  Score=159.68  Aligned_cols=375  Identities=18%  Similarity=0.216  Sum_probs=245.0

Q ss_pred             HHHHHHHhhhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHH
Q 011277           54 LVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGAS  133 (489)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~  133 (489)
                      +.++.--++.|.......+.+|.+.+.++++..  +.+++...++.||.+++++.|.+.+|+|+|+.++.++.++++++.
T Consensus        16 v~~t~lFfl~G~~~~l~diLip~l~~~f~ls~~--~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~   93 (422)
T COG0738          16 VLLTSLFFLWGFITCLNDILIPHLKEVFDLTYF--EASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAA   93 (422)
T ss_pred             HHHHHHHHHHHHHhhcchhhHHHHHHHhCccHH--HHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence            344444567788888888899999999988754  568999999999999999999999999999999999999999999


Q ss_pred             HH---hhcchHHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccC-------
Q 011277          134 IS---ATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEI-------  203 (489)
Q Consensus       134 l~---~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~-------  203 (489)
                      +.   +...++..++++-++.|.|.|...+....|++.+.+++.-.+.+++.+..+.+|.+.+|+++..+...       
T Consensus        94 lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~  173 (422)
T COG0738          94 LFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMS  173 (422)
T ss_pred             HHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccC
Confidence            97   46788999999999999999999999999999999998888899999999999999999987654331       


Q ss_pred             -----------CchhHHHHHHHHHHHHHHHHHhhh--ccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccC
Q 011277          204 -----------AGWWRICFWVSIVPAAILCLAMVF--CAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRG  270 (489)
Q Consensus       204 -----------~~~wr~~f~~~~i~~~~~~~~~~~--~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (489)
                                 ...|+++|...+...+++.+....  .||.+        .++                       .++.
T Consensus       174 ~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~--------~~~-----------------------~~~~  222 (422)
T COG0738         174 AAQILAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQ--------VAA-----------------------PSLG  222 (422)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCC--------ccc-----------------------cccc
Confidence                       112567766543333322222211  12210        000                       0000


Q ss_pred             CCCcchhHHHhhhccchhHHHHHHHHHHHHhhhhHHHHHHhHHHHHHh-cCCC---cchHHHHHHHHHHHHHHHHHHHhh
Q 011277          271 DDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKS-AGLS---SGLANVFVGIANLLGSVVAMVLMD  346 (489)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~i~~~~g~~~~g~l~d  346 (489)
                       +.+.....+.+++++++.-.++.+++.-........+.    ....+ .+.+   .........++..+|.+++.++..
T Consensus       223 -~~~~~~~~~l~~~~~~~~gvl~~FlYVG~Eva~gsfl~----~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~  297 (422)
T COG0738         223 -ASGSAGLSSLFQNKHLRLGVLAIFLYVGAEVAIGSFLV----SYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMS  297 (422)
T ss_pred             -ccccchHHHHHhChHHHHHHHHHHHHHhHHHHHHHHHH----HHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             00111456678888888777766666554433222222    22222 3333   223455566788899999999999


Q ss_pred             hcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHH
Q 011277          347 KLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMS  426 (489)
Q Consensus       347 r~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~  426 (489)
                      |+...+.+........+.++......     +....+.    +.+.+ .+.....|..+....+..| ++-..+.++ ..
T Consensus       298 ~~~~~k~Laf~a~~~ill~~~~~l~~-----g~v~~~~----l~~ig-~F~simfPTIfslal~~l~-~~ts~~s~~-l~  365 (422)
T COG0738         298 RIKPEKYLAFYALIAILLLLAVALIG-----GVVALYA----LFLIG-LFNSIMFPTIFSLALKNLG-EHTSVGSGL-LV  365 (422)
T ss_pred             HhCHHHHHHHHHHHHHHHHHHHHHhc-----ChHHHHH----HHHHH-HHhHHHHHHHHHHHHhccC-cccccccee-ee
Confidence            99888877655433333333322222     1111111    11111 1222234555556667777 333333333 33


Q ss_pred             HHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHhhcccCCCCCH
Q 011277          427 VHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNVVETKGKSL  478 (489)
Q Consensus       427 ~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~et~~~~~  478 (489)
                      +.-+|+.+.|.+.+.+.|..|....+.....+|.+..++..+.-...|++..
T Consensus       366 maivGGAiiP~l~G~i~d~~g~~~~~~~~pllc~lyV~~~~~~~~~~k~~~~  417 (422)
T COG0738         366 MAIVGGAIIPPLQGVIADMFGIQLTFLIVPLLCYLYVLFFALIGKKSKGRLS  417 (422)
T ss_pred             eheecchHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcccccchh
Confidence            4456888999999999898887776665666666665554444444555543

>PTZ00207 hypothetical protein; Provisional

Probab=99.83  E-value=7.4e-18  Score=170.00  Aligned_cols=170  Identities=18%  Similarity=0.057  Sum_probs=123.4

Q ss_pred             ccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhc------chHHHH
Q 011277           71 NEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATT------RNLIGM  144 (489)
Q Consensus        71 ~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~------~~~~~l  144 (489)
                      +...|.+.+++|++.++  .+++.+. ...+++++++.|+++||+|||+++.++.+++.++.++++++      .+++.+
T Consensus        47 sv~s~~L~~~lgls~~~--l~~i~sv-g~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l  123 (591)
T PTZ00207         47 NLISGAMQARYNLTQRD--LSTITTV-GIAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRL  123 (591)
T ss_pred             HHHHHHHHHHhCcCHHH--HHHHHHH-HHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHH
Confidence            34567789999987554  4555554 23445677889999999999999999999999999999987      689999


Q ss_pred             HHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHH-HHHHhhcccccCCchhHHHHHHHHHHHHH-HH
Q 011277          145 LLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLM-GSLLIGIPVKEIAGWWRICFWVSIVPAAI-LC  222 (489)
Q Consensus       145 ~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~-~g~~~~~~l~~~~~~wr~~f~~~~i~~~~-~~  222 (489)
                      .+.|+++|+|.+...+.+...+.+++| ++||++.++...+..+|.. .+++....+.  .+ |+..|++.++..++ .+
T Consensus       124 ~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~--~~-~~~~fl~l~vl~~vv~l  199 (591)
T PTZ00207        124 SVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS--DN-TSAYFFFLMSFALVVGI  199 (591)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--Hh-HHHHHHHHHHHHHHHHH
Confidence            999999999999888888888999986 6799999999999999975 4555544433  23 56666554333333 33


Q ss_pred             HHhh--hccCChHHHHhcCCHHHHHHH
Q 011277          223 LAMV--FCAESPHWLYKKGRTAEAEAE  247 (489)
Q Consensus       223 ~~~~--~~~Esp~~l~~~~~~~~~~~~  247 (489)
                      +...  ..||.|++...+++.++.++.
T Consensus       200 l~~~~vr~p~~~~~~~~~~~~~~~~~~  226 (591)
T PTZ00207        200 LAIVFMRLPPFHLTGYQEKHLDEEEKA  226 (591)
T ss_pred             HHHhheeCCcchhhcccccCCCHHHHH
Confidence            3333  346666665444444444443

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.82  E-value=1.3e-17  Score=169.06  Aligned_cols=159  Identities=16%  Similarity=0.170  Sum_probs=118.2

Q ss_pred             HHHhhhhccceeeccchh-hhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhh-chhhHHHHHhHHHHHHHHHHH
Q 011277           58 LSSFLFGYHLGVVNEPLE-SISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADG-VGRRRAFQLCALPMIIGASIS  135 (489)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr-~GRr~~~~~~~~~~~i~~~l~  135 (489)
                      ...+........+...++ .+.+++|++.++  .++..+.+........+++|+++|| +|||+++..+.++++++..++
T Consensus        28 ~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~--a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~  105 (500)
T PRK09584         28 SIELWERFGYYGLQGIMAVYLVKQLGMSEAD--SITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALV  105 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH--HHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHH
Confidence            333344333333333343 345788886543  3455655554444556789999999 599999999999999999999


Q ss_pred             hhcc-hHHHHHHHHHHHhhhcccccccccccccccCCccc--chhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHH
Q 011277          136 ATTR-NLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFV--RGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFW  212 (489)
Q Consensus       136 ~~~~-~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~--Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~  212 (489)
                      ++++ +...+.++|+++|+|.|...+....+++|++|+++  |+.+.+++..+..+|..+|+++++.+.+..| ||+.|+
T Consensus       106 ~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g-~~~~F~  184 (500)
T PRK09584        106 AWSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYG-WSVAFA  184 (500)
T ss_pred             HHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhC-HHHHHH
Confidence            8874 45667788999999999888888889999998654  4457788889999999999999888877667 699998


Q ss_pred             HHHHHHH
Q 011277          213 VSIVPAA  219 (489)
Q Consensus       213 ~~~i~~~  219 (489)
                      +..+...
T Consensus       185 i~~i~~~  191 (500)
T PRK09584        185 LSVVGML  191 (500)
T ss_pred             HHHHHHH
Confidence            8654333

>TIGR00788 fbt folate/biopterin transporter

Probab=99.79  E-value=1.4e-17  Score=167.36  Aligned_cols=373  Identities=16%  Similarity=0.130  Sum_probs=213.5

Q ss_pred             HHHHHHhhhhccceeeccch-hhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhch-----hhHHHHHhHHHH
Q 011277           55 VATLSSFLFGYHLGVVNEPL-ESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVG-----RRRAFQLCALPM  128 (489)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~G-----Rr~~~~~~~~~~  128 (489)
                      ++....+..|.. ......+ +.+.+++|++.++  .+...+...+.+.+-.+ +|+++||++     ||+.++++.++.
T Consensus        30 ~~~~~y~~qGl~-~l~~~~~~~~l~~~lg~s~~~--i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~l~  105 (468)
T TIGR00788        30 IGLQVLFVKGIA-GLMRLPLSPMLTDDLGLDGAR--YQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGLLG  105 (468)
T ss_pred             HHHHHHHHhhHH-HHhhhhhhHHHHHhcCCCHHH--HHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHHHH
Confidence            333344666766 5444444 4555578987654  45678888888888666 999999998     788777777665


Q ss_pred             H-HHHHHHhhcchHHHHH-HHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHH---HHHHHHHHHhhcccccC
Q 011277          129 I-IGASISATTRNLIGML-LGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIAT---CLGLMGSLLIGIPVKEI  203 (489)
Q Consensus       129 ~-i~~~l~~~~~~~~~l~-~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~---~~G~~~g~~~~~~l~~~  203 (489)
                      + ++....+..++..... +.+++.+++.+..-....++..|..+ ++++...+..+..+   .+|.++++.+++.+.+.
T Consensus       106 ~~~~~~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~  184 (468)
T TIGR00788       106 SAILYGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLDK  184 (468)
T ss_pred             HHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3 3322233334544444 48999999999888899999999999 66655544544444   47888888888777666


Q ss_pred             CchhHHHHHHHHHHHHHHHHHhhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhh
Q 011277          204 AGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLY  283 (489)
Q Consensus       204 ~~~wr~~f~~~~i~~~~~~~~~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (489)
                      .+ ||..|++.+...++..+...+++|++...  +.+.++.+.....    .......+...       .......+.++
T Consensus       185 ~~-~~~~f~~~a~l~ll~~~~~~~~~E~~~~~--~~~~~~~~~~~~~----~~~~~~~~~~~-------~~~~~l~~~l~  250 (468)
T TIGR00788       185 TL-TRILFLITAALLLLQLFVSNLSKERRAFV--RPRIGTYLEMNMA----LLTLGVLANVK-------VQILGLRGAIQ  250 (468)
T ss_pred             cC-cchHHHHHHHHHHHHHHHHHhcccccccc--cccccccchhhhh----hhhhhHHHHHH-------HHHHHHHHHHh
Confidence            66 69888876555555455556778863100  0000000000000    00000000000       00112233344


Q ss_pred             ccchhHHHHHHHHHHHHhhhhHHHHHHhHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHH
Q 011277          284 GRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAV  363 (489)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i  363 (489)
                      ++..+......++............+++.+...+......|......+++.+++..+.+++.+|++.|+++..+.+...+
T Consensus       251 ~~~i~~~l~fifl~~~~~~~~~~~~f~~~~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~  330 (468)
T TIGR00788       251 LLEIAKPLIFIFLSYANLPGASGSVFCATTQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTL  330 (468)
T ss_pred             cHHHHHHHHHHHHHHhhcCCCCceeEEEEcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHH
Confidence            44433322222220111111111111222232333333456777778899999999999999999999988777666655


Q ss_pred             HHHHHHHHhhccC--CCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 011277          364 SMAIQVAASSSYI--PGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLR  441 (489)
Q Consensus       364 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~  441 (489)
                      +............  ......++......+..+.+.+...|. ..+..+..|++.+++..++..++.+++..+++.+...
T Consensus       331 ~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~~~~~g~~~~~~-~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~  409 (468)
T TIGR00788       331 SSLFDLILVKRWNLAFGISDEVFVLGDSIIAEVLAQLKFMPF-LVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVL  409 (468)
T ss_pred             HHhCceeeeeccccccCCCCeeeeeehhHHHHHHHHHHHccH-HHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHH
Confidence            4433211100000  000001111122223333344444444 4578899999999999999999999999999987777


Q ss_pred             HHHHhC
Q 011277          442 LLEQLG  447 (489)
Q Consensus       442 l~~~~g  447 (489)
                      +.+..|
T Consensus       410 l~~~~g  415 (468)
T TIGR00788       410 LMETIG  415 (468)
T ss_pred             HHHHcC
Confidence            777777

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.78  E-value=1.1e-17  Score=167.41  Aligned_cols=381  Identities=17%  Similarity=0.136  Sum_probs=233.0

Q ss_pred             hhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhcchH
Q 011277           62 LFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNL  141 (489)
Q Consensus        62 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~  141 (489)
                      .+|...+ +....+.+.++++.+.++  .+|+.++....+.+..++.+.+.||+|.|++.+.+.++..+|.+++.+++++
T Consensus        58 ~~g~~~~-~Gv~~~~~~~~f~~s~~~--~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~~~i  134 (509)
T KOG2504|consen   58 TDGLINS-FGLLFEELMDYFGSSSSQ--IAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAALGLLLSSFATSL  134 (509)
T ss_pred             hhcchhe-ehhhHHHHHHHhCCCccH--HHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhhH
Confidence            3444332 345678899999877654  5799999999999999999999999999999999999999999999999999


Q ss_pred             HHHHH-HHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHH
Q 011277          142 IGMLL-GRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAI  220 (489)
Q Consensus       142 ~~l~~-~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~i~~~~  220 (489)
                      +++++ .=++.|+|.|..+.....++..+| +++|+.+.++...+..+|..+-+.+.-.+.+..| ||+.+++.....+-
T Consensus       135 ~~l~lt~gvi~G~G~~~~~~paiviv~~YF-~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G-~r~~~l~~~~~~l~  212 (509)
T KOG2504|consen  135 WQLYLTFGVIGGLGLGLIYLPAVVILGTYF-EKKRALATGIAVSGTGVGTVVFPPLLKYLLSKYG-WRGALLIFGGISLN  212 (509)
T ss_pred             HHHHHHHHHHhhccchhhhcchhhhhhhHh-HHHHHHHHhhhhccCCcceeeHHHHHHHHHHHhC-cHHHHHHHHHHHHH
Confidence            88775 689999999999988888888665 5569999999999999987666666555566667 57766654333333


Q ss_pred             HHHH-hhhccCChHHHHhcCCHHHHHHHHHHH-----------h--CCC-chh---HHHHHHHhhccCCC--CcchhH--
Q 011277          221 LCLA-MVFCAESPHWLYKKGRTAEAEAEFEKL-----------L--GGS-HVK---SSLAELSKLDRGDD--GDIVKF--  278 (489)
Q Consensus       221 ~~~~-~~~~~Esp~~l~~~~~~~~~~~~~~~~-----------~--~~~-~~~---~~~~~~~~~~~~~~--~~~~~~--  278 (489)
                      .++. ...-|.+++-   +.+.+++.+.....           .  +.. ..+   ....+..+.+++..  ..+...  
T Consensus       213 ~~~~~~~~rp~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (509)
T KOG2504|consen  213 VLVAGALLRPLSPPK---KPNEEKDLRNSAASVESTPKPVELRISERDSGLKKLSLSNLATLKRGPDKWRNSPLQAFLSM  289 (509)
T ss_pred             HHHHHHHcCCCCcCC---CchhhhhhccccccccccccccccccccCCCCCCcccccchhhhhhCCccccccchhhhhhh
Confidence            3333 3333423211   00000000000000           0  000 000   00000000000000  111111  


Q ss_pred             --HHhhhccchhHHHHHHHHHHHHhhhhHHHHHHhHHHHHHhcCCCc---chHHHHHHHHHHHHHHHHHHHhhhcCCchh
Q 011277          279 --EELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSS---GLANVFVGIANLLGSVVAMVLMDKLGRKAL  353 (489)
Q Consensus       279 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~g~~~~g~l~dr~grr~~  353 (489)
                        .++++++.+.....+..+..    .+++...++.+...+..+.+.   ......+++.+.+|.++.|++.|+...++.
T Consensus       290 ~d~~ll~~~~fl~~~~~~~~~~----~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~  365 (509)
T KOG2504|consen  290 LDLSLLKDPKFLLLALSNLFAY----LGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRAL  365 (509)
T ss_pred             hhHHHHcCchHHHHHHHHHHHH----HHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchH
Confidence              35666655544444333322    223334455555555655543   456677889999999999999999884443


Q ss_pred             --HHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHH
Q 011277          354 --LQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVI  431 (489)
Q Consensus       354 --~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~  431 (489)
                        ..++.+..+++........      ....  .+...++++...+ ....+....+.|+.+.+.-+.+.|+...+..++
T Consensus       366 ~~~~~~ll~~gl~~~~~p~~~------~~~~--l~~~~~~fG~~~g-~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~  436 (509)
T KOG2504|consen  366 VLFLLTLLIAGLARLFLPFAT------TYVG--LIVFSILFGFCVG-SFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIG  436 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHhc------cHHH--HHHHHHHHHHHHH-HHHHHHHHHHHHHcChhhcchHHHHHHHHhHHH
Confidence              3333333333332211111      1111  1111111111111 112344457889999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhC-CchhhHHHHHHHHHHH
Q 011277          432 NFFVGLLFLRLLEQLG-PQLLYSIFGTFCLMAV  463 (489)
Q Consensus       432 ~~~~~~~~~~l~~~~g-~~~~~~~~~~~~~~~~  463 (489)
                      ..++|.+.+.+.|..+ +...|.+.+.+.+++.
T Consensus       437 ~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~  469 (509)
T KOG2504|consen  437 ALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSA  469 (509)
T ss_pred             HHcCcccceeeeeccCCeeeehhhcChHHHHHH
Confidence            9999988888888777 5666777776665554

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.78  E-value=3.9e-16  Score=154.45  Aligned_cols=380  Identities=14%  Similarity=0.131  Sum_probs=215.3

Q ss_pred             ccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhh----hchhhHHHHHh-HHHHHHHHHHHhhcchHHHHH
Q 011277           71 NEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIAD----GVGRRRAFQLC-ALPMIIGASISATTRNLIGML  145 (489)
Q Consensus        71 ~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~D----r~GRr~~~~~~-~~~~~i~~~l~~~~~~~~~l~  145 (489)
                      .+.++.+.+++|.+.  ...+++.....+...+.+++.|.++|    |+|||+.+++. .+...++..+.+++++...++
T Consensus        24 ~~~l~~yl~~lg~~~--~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~  101 (477)
T TIGR01301        24 LSLLTPYVQELGIPH--AWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHLF  101 (477)
T ss_pred             HHHHHHHHHHcCCCH--HHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhhc
Confidence            334445667788754  45577777888888899999999999    59999999875 455555556666666543211


Q ss_pred             ------------HHHHHHh-----hhcccccccccccccccCCcccc--hhhhhHHHHHHHHHHHHHHHhhcccc--c--
Q 011277          146 ------------LGRFVVG-----TGMGLGPTVAALYVTEVSPPFVR--GTYGAFIQIATCLGLMGSLLIGIPVK--E--  202 (489)
Q Consensus       146 ------------~~R~l~G-----~g~g~~~~~~~~~i~e~~~~~~R--g~~~~~~~~~~~~G~~~g~~~~~~l~--~--  202 (489)
                                  +.+++.|     ++.....+...++++|.+|+++|  +.+.++.+....+|..+|+.+|+...  .  
T Consensus       102 ~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~  181 (477)
T TIGR01301       102 GDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIF  181 (477)
T ss_pred             cccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhc
Confidence                        1233333     46666667788999999999876  57889888888999888888775421  0  


Q ss_pred             ------C----CchhHHHHHHHHHHHHHH-HHHhhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCC
Q 011277          203 ------I----AGWWRICFWVSIVPAAIL-CLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGD  271 (489)
Q Consensus       203 ------~----~~~wr~~f~~~~i~~~~~-~~~~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (489)
                            .    ...-|+.|++.++..++. .+..+..+|.|..  ..++.+  +++.++..+.               +.
T Consensus       182 ~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~--~~~~~~--~~~~~~~~~~---------------~~  242 (477)
T TIGR01301       182 PFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLI--GSDDFI--NSEAAPPSKH---------------GE  242 (477)
T ss_pred             ccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCC--ccccch--hhhccccccc---------------ch
Confidence                  0    113588888865544443 3445667886521  111100  0000000000               00


Q ss_pred             CCcchhHHHhhh--ccchhHHHHHHHHHHHHhhhhHHHHHHhH----HHHHHhcCC-----Cc----c-hHHHHHHHHHH
Q 011277          272 DGDIVKFEELLY--GRHFRVVFIGSTLFALQQLSGINAIFYFS----SSVFKSAGL-----SS----G-LANVFVGIANL  335 (489)
Q Consensus       272 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~-----~~----~-~~~~~~~i~~~  335 (489)
                      ......+.+.++  .+.++.+...-++.++..+   ....|..    ..+|+....     +.    | +..+..++...
T Consensus       243 ~~~~~~i~~~~~~mP~~m~~l~~vqffsW~a~f---~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~  319 (477)
T TIGR01301       243 EAFFGELFGAFKYLPRPVWILLLVTCLNWIAWF---PFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLG  319 (477)
T ss_pred             hhhHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH---HHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHH
Confidence            000011111121  1223333322222222211   1122222    223321110     11    1 23445556666


Q ss_pred             HHHHHHHHHhhhcCC-chhHHHhhHHHHHHHHHHHHHhhc-----c--------CCCchhhHHHHHHHHHHHHHHhcCcc
Q 011277          336 LGSVVAMVLMDKLGR-KALLQWSFFSMAVSMAIQVAASSS-----Y--------IPGSASLYLSVGGMLMFVLTFALGAG  401 (489)
Q Consensus       336 ~g~~~~g~l~dr~gr-r~~~~~~~~~~~i~~~~~~~~~~~-----~--------~~~~~~~~~~~~~~~~~~~~~~~~~~  401 (489)
                      +.+++-.++.+|+|+ |+....+.++.++++.........     .        .+.....+..+......++.++. ..
T Consensus       320 i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~-~~  398 (477)
T TIGR01301       320 ITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAI-TY  398 (477)
T ss_pred             HHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHH-HH
Confidence            777777888999985 666677777777776665433320     0        01111112222222333333322 23


Q ss_pred             ccccccccccCCch--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CchhhHHHHHHHHHHHHHHHhhcccCCC
Q 011277          402 PVPSLLLPEIFPSR--IRAKAMAVCMSVHWVINFFVGLLFLRLLEQLG--PQLLYSIFGTFCLMAVAFVKRNVVETKG  475 (489)
Q Consensus       402 ~~~~~~~~e~~p~~--~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~et~~  475 (489)
                      .++++++++..|++  ..|..+|+.|..-.+...+.....+.+.+..|  ....+.+-++..+++.+...+.+|+++.
T Consensus       399 siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~~~~  476 (477)
T TIGR01301       399 SIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPRPRV  476 (477)
T ss_pred             HHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence            57888888888854  44889999998888888877776666555555  3456666777778888888888998764

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.75  E-value=4.9e-15  Score=136.07  Aligned_cols=353  Identities=18%  Similarity=0.224  Sum_probs=232.9

Q ss_pred             hhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhcchHH
Q 011277           63 FGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLI  142 (489)
Q Consensus        63 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~  142 (489)
                      ..-..+.+.+.++++..|+|.+.+  ..|+++++-.+.+++.+++..+|+.|+|.++.+..++++.++|..+-... +..
T Consensus        24 LR~~itsvgPLL~~Ir~~~gls~s--~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~-~~~  100 (395)
T COG2807          24 LRPAITSVGPLLDEIRQDLGLSFS--VAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLG-GLP  100 (395)
T ss_pred             cchhhhhhhhhHHHHHHHhcccHH--HHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc-cHH
Confidence            333456788889999999999755  46899999999999999999999999999999999999999999998777 777


Q ss_pred             HHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHHH
Q 011277          143 GMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILC  222 (489)
Q Consensus       143 ~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~i~~~~~~  222 (489)
                      .++.+-.+.|.|.+......+..+.+.+|++ -+..+++|.+....|...++.+..++.++.+.||.....=..++++.+
T Consensus       101 ~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~-~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl~allAl  179 (395)
T COG2807         101 LLFLGTLLAGAGIAVINVLLPSLIKRDFPKR-VGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWALLALLAL  179 (395)
T ss_pred             HHHHHHHHHHhhHHHHHHhhhHHHHhhcccc-hhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHHHH
Confidence            8899999999999999999999999999876 688999999999999999998888888776446876655445565554


Q ss_pred             HHhhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHHHHHHHHHHHhh
Q 011277          223 LAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQL  302 (489)
Q Consensus       223 ~~~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (489)
                      +.++  |...     |++ .+.                       .+.   +..+-..+++++.-+.+.+   .+.++.+
T Consensus       180 ~~Wl--Pq~~-----r~~-~~~-----------------------~~~---~~~~~~~vw~~~~aW~vtL---fmGlqS~  222 (395)
T COG2807         180 LIWL--PQAL-----REQ-AAS-----------------------IAT---KLVSVRKVWRSPLAWQVTL---FMGLQSL  222 (395)
T ss_pred             HHHh--hhcc-----ccc-ccc-----------------------ccc---ccccccccccCchhHHHHH---HHHhhHH
Confidence            4432  2211     110 000                       000   0011122344443333322   2222322


Q ss_pred             hhHHHHHHhHHHHHHhcCCCc---chHHHHHHHHHHHHHHHHHHHhhhc-CCchhHHHhhHHHHHHHHHHHHHhhccCCC
Q 011277          303 SGINAIFYFSSSVFKSAGLSS---GLANVFVGIANLLGSVVAMVLMDKL-GRKALLQWSFFSMAVSMAIQVAASSSYIPG  378 (489)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~g~~~~g~l~dr~-grr~~~~~~~~~~~i~~~~~~~~~~~~~~~  378 (489)
                       .++...-|.|.++.+.|.+.   |.......+.+++.++....+.+|. .+|+........+.++.+.+.+.+.+    
T Consensus       223 -~~Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~~----  297 (395)
T COG2807         223 -LYYIVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPGQ----  297 (395)
T ss_pred             -HHHHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhh----
Confidence             23444557788888888774   4555566678888888888888875 45665555444455544443322211    


Q ss_pred             chhhHHHHHHHHHHHHHHhcCccccccc-cccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-chhhHHHH
Q 011277          379 SASLYLSVGGMLMFVLTFALGAGPVPSL-LLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGP-QLLYSIFG  456 (489)
Q Consensus       379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~-~~~~~~~~  456 (489)
                      ....|.     ++++.+.+ +..|+.-. .....-.++..+.-.|+.+.++++.+..+|.+++.+.|..|. ......++
T Consensus       298 ~~~lw~-----~llG~G~G-~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~  371 (395)
T COG2807         298 LPILWA-----LLLGLGQG-GAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLA  371 (395)
T ss_pred             HHHHHH-----HHHhCccc-hHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHH
Confidence            111221     11111100 00111111 122222457788889999999999999999999999998764 34444555


Q ss_pred             HHHHHHHHHHH
Q 011277          457 TFCLMAVAFVK  467 (489)
Q Consensus       457 ~~~~~~~~~~~  467 (489)
                      .+.+...+..+
T Consensus       372 ~~~i~m~i~Gl  382 (395)
T COG2807         372 LATLLMLIFGL  382 (395)
T ss_pred             HHHHHHHHHHh
Confidence            55554444443

>PRK09669 putative symporter YagG; Provisional

Probab=99.74  E-value=7e-16  Score=154.93  Aligned_cols=330  Identities=14%  Similarity=0.156  Sum_probs=184.8

Q ss_pred             hhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhh----chhh-HHHHHhHHHHHHHHHHHhhcch------HHHH
Q 011277           76 SISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADG----VGRR-RAFQLCALPMIIGASISATTRN------LIGM  144 (489)
Q Consensus        76 ~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr----~GRr-~~~~~~~~~~~i~~~l~~~~~~------~~~l  144 (489)
                      .+.+++|++  ....|.+.....+..++..++.|.++||    +||| |.++.+.+..++...+....++      ...+
T Consensus        35 ~~t~~~gls--~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~~  112 (444)
T PRK09669         35 FYTDVFGLS--AAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKIIYA  112 (444)
T ss_pred             HHHHhcCCC--HHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHHHH
Confidence            345566776  4456888888998999999999999998    8885 4455666677666655544432      3455


Q ss_pred             HHHHHHHhhhcccccccccccccccC-CcccchhhhhHHHHHHHHHHHHHHHhhcccc----c---CCchhHHHHHHHHH
Q 011277          145 LLGRFVVGTGMGLGPTVAALYVTEVS-PPFVRGTYGAFIQIATCLGLMGSLLIGIPVK----E---IAGWWRICFWVSIV  216 (489)
Q Consensus       145 ~~~R~l~G~g~g~~~~~~~~~i~e~~-~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~----~---~~~~wr~~f~~~~i  216 (489)
                      .+.-++.+.+.........++.+|+. ++++|.+..++......+|..+++.+..++.    .   ..+ |+..+.+.++
T Consensus       113 ~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g-~~~~~~i~~i  191 (444)
T PRK09669        113 CVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKG-YFYAMMVMGL  191 (444)
T ss_pred             HHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhh-HHHHHHHHHH
Confidence            55666666665555555667889988 5688998888777776776555544322211    1   123 6766665444


Q ss_pred             HHHHHHHH-hhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHHHHHH
Q 011277          217 PAAILCLA-MVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGST  295 (489)
Q Consensus       217 ~~~~~~~~-~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (489)
                      ...+..+. .+..+|.++       +++                         +++......+++.+++++++......+
T Consensus       192 i~~v~~~~~~~~~~e~~~-------~~~-------------------------~~~~~~~~~~~~~~~n~~~~~l~~~~~  239 (444)
T PRK09669        192 LGVVLFFCCFFMTKERYT-------PEV-------------------------DNSSSVWKDLKLLLGNSQWRIMFIFNV  239 (444)
T ss_pred             HHHHHHHHHhCCeEEecC-------CCC-------------------------cCCCCHHHHHHHHhCCchHHHHHHHHH
Confidence            43333322 333333210       000                         000001123455667777776655433


Q ss_pred             HHHHHhhhhHHHHHHhHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhcc
Q 011277          296 LFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSY  375 (489)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~  375 (489)
                      +.............||..+..+... ..+.......+..+++.++.+++.||+|+|+....+.....+.........   
T Consensus       240 ~~~~~~~~~~~~~~y~~~~~~~~~~-~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~---  315 (444)
T PRK09669        240 VLLTAVVTRGGATLYYVNYVLLRPD-LATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIP---  315 (444)
T ss_pred             HHHHHHHHHhhhhheeeeeecCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhC---
Confidence            3322221111122233322221100 112233344566778888899999999999988776554443322222111   


Q ss_pred             CCCchhhHHHHHHHHHHHHHHhcCccccccccccccCC-------chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 011277          376 IPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFP-------SRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGP  448 (489)
Q Consensus       376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-------~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~  448 (489)
                       ++.  .+......++..++.+ +..++.+.+.+|..+       .+..+...+..+.+..++..+++.+.+.+++..|+
T Consensus       316 -~~~--~~~~~~~~~i~g~~~~-~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~Gy  391 (444)
T PRK09669        316 -PSN--VWLIFALNILFNFIQN-LTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVDY  391 (444)
T ss_pred             -cch--HHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence             111  1111122222333322 234566777888775       23345667888888899999999888888876654

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.73  E-value=5.9e-15  Score=144.28  Aligned_cols=341  Identities=18%  Similarity=0.186  Sum_probs=196.0

Q ss_pred             ceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhch-hhHHHHHhHHHHHHHHHHHhhcchHHHHH
Q 011277           67 LGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVG-RRRAFQLCALPMIIGASISATTRNLIGML  145 (489)
Q Consensus        67 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~G-Rr~~~~~~~~~~~i~~~l~~~~~~~~~l~  145 (489)
                      .+...|.++.+.++.|++  ..|.|.+.+...+...++++++|.++||++ +|+++.++.++.++........++++.++
T Consensus        18 ~G~~~p~~~~~L~~~G~s--~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~~~f~~~~   95 (400)
T PF03825_consen   18 YGAFLPYLPLYLESRGFS--GTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFSSSFWWLF   95 (400)
T ss_pred             HHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence            334556677788888876  446799999999999999999999999986 57777777777777666677788898888


Q ss_pred             HHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHH-----HHhhcccccCCchhHHHHHHHHHHHHH
Q 011277          146 LGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGS-----LLIGIPVKEIAGWWRICFWVSIVPAAI  220 (489)
Q Consensus       146 ~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g-----~~~~~~l~~~~~~wr~~f~~~~i~~~~  220 (489)
                      +.-++..+...+..+...++..+...++++  --+-+-+..++|..++     ..+.... +..+ ..+.+++.....++
T Consensus        96 ~~~~l~~~~~~p~~pl~dsi~~~~~~~~~~--~YG~iRlwGSiGf~~~~~~~~~~~~~~~-~~~~-~~~~~~i~~~~~~l  171 (400)
T PF03825_consen   96 VIMLLFSFFFSPTMPLSDSIALSYLGDRGK--DYGRIRLWGSIGFIVAALAFGGLLGGYL-GISG-TSLIFYIAAILSLL  171 (400)
T ss_pred             HHHHHHHHHHccHHHHHHHHHHHHcccccC--CCCcchhhhhHHHHHHHHHHHHHHHhhh-cccc-ccHHHHHHHHHHHH
Confidence            877777777777777777777776653222  1122222223332222     1111111 1111 23345554444444


Q ss_pred             HHHHhhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHHHHHHHHHHH
Q 011277          221 LCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQ  300 (489)
Q Consensus       221 ~~~~~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (489)
                      .....+.+|++|.    +++.++.                         .++....+..+++++|++...++..++....
T Consensus       172 l~~~~l~lp~~~~----~~~~~~~-------------------------~~~~~~~~~~~llk~~~~~~Fll~~~l~~~~  222 (400)
T PF03825_consen  172 LAGFALFLPKTPP----KRSAKES-------------------------VKKLLGLDALKLLKNPRFLVFLLAAFLIGIS  222 (400)
T ss_pred             HHHHHHhCCCCcc----ccccCCC-------------------------cccccchHHHHHhcCccHHHHHHHHHHHHHH
Confidence            4444556777751    1110000                         0000111234566666665554443333222


Q ss_pred             hhhhHHHHHHhHHHHHHhcC-CCc---chHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccC
Q 011277          301 QLSGINAIFYFSSSVFKSAG-LSS---GLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYI  376 (489)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~  376 (489)
                      .    .....|....+++.+ .+.   +.......+.+++.-...+++..|+|.|+++.++.....+=..+......   
T Consensus       223 ~----~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~---  295 (400)
T PF03825_consen  223 H----AAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSD---  295 (400)
T ss_pred             H----HHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcC---
Confidence            1    112223333445544 332   33333445677788888999999999999887776554443333332211   


Q ss_pred             CCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHhCCch
Q 011277          377 PGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHW-VINFFVGLLFLRLLEQLGPQL  450 (489)
Q Consensus       377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~g~~~  450 (489)
                      +............++.+..|+... .....|+.|..|++.|++++++.+.+.+ +++.++..+.+.+++..|...
T Consensus       296 ~~~~~~~~~~l~q~lhG~tf~~~~-~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~  369 (400)
T PF03825_consen  296 PWPFIVALQLLGQLLHGLTFGLFH-AASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARG  369 (400)
T ss_pred             CcHHHHHHHHHHHhhhhHHHHHHH-HHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchh
Confidence            111111111111223344433221 2334589999999999999999887654 677777888888888877553

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.72  E-value=1.9e-14  Score=143.06  Aligned_cols=145  Identities=21%  Similarity=0.226  Sum_probs=110.1

Q ss_pred             eccchhhh-hhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhc-hhhHHHHHhHHHHHHHHHHHhhcc-hHHHHHH
Q 011277           70 VNEPLESI-SLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGV-GRRRAFQLCALPMIIGASISATTR-NLIGMLL  146 (489)
Q Consensus        70 ~~~~~~~i-~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~-GRr~~~~~~~~~~~i~~~l~~~~~-~~~~l~~  146 (489)
                      +...+|.+ .+++|++.+  +.+.+.+.+.....++++++|+++||+ |||+++.++.++..++.++.+... +...+.+
T Consensus        28 ~~~~L~~yL~~~lgls~~--~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~~~~~~~l  105 (493)
T PRK15462         28 MRALLILYLTNQLKYDDN--HAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIHPSFLYL  105 (493)
T ss_pred             HHHHHHHHHHHhcCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhcchhHHHH
Confidence            33445544 445677643  456778888888889999999999999 999999999999999887776543 2233444


Q ss_pred             HHHHHhhhcccccccccccccccCCcc--cchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHH
Q 011277          147 GRFVVGTGMGLGPTVAALYVTEVSPPF--VRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVP  217 (489)
Q Consensus       147 ~R~l~G~g~g~~~~~~~~~i~e~~~~~--~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~i~  217 (489)
                      +-.+.++|.|...+....+++|.+|++  +|+...+++.....+|..++|.+...+.+..+ ||+.|+++++.
T Consensus       106 ~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~G-w~~~F~iaaig  177 (493)
T PRK15462        106 SLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYS-WAMGFGLAAVG  177 (493)
T ss_pred             HHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhC-hHHHHHHHHHH
Confidence            444455666666666778899999976  69989999998889999999999888877667 69999876543

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.69  E-value=4.9e-14  Score=140.47  Aligned_cols=356  Identities=17%  Similarity=0.211  Sum_probs=198.8

Q ss_pred             HHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHH-HHHHHHHHHhhc-chHHH-HHHHHHHHhhhcccccccccccc
Q 011277           90 EGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCAL-PMIIGASISATT-RNLIG-MLLGRFVVGTGMGLGPTVAALYV  166 (489)
Q Consensus        90 ~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~-~~~i~~~l~~~~-~~~~~-l~~~R~l~G~g~g~~~~~~~~~i  166 (489)
                      .++..++..+-.++-.++.|.++|+-||||-++.... +..+++.+..+. ++.+. ..+.-++.-++.+.......+++
T Consensus        72 ~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna~L  151 (477)
T PF11700_consen   72 WLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNAYL  151 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3566777777777889999999999998877765444 444455554443 33333 33344444456666677788899


Q ss_pred             cccCCcccc--------------------------hhhhhHHHHHHHHHHHHHHHhhcccccCC------ch-hHHHHHH
Q 011277          167 TEVSPPFVR--------------------------GTYGAFIQIATCLGLMGSLLIGIPVKEIA------GW-WRICFWV  213 (489)
Q Consensus       167 ~e~~~~~~R--------------------------g~~~~~~~~~~~~G~~~g~~~~~~l~~~~------~~-wr~~f~~  213 (489)
                      .|+.+++++                          ++.++.-.....+|.++..++...+....      .+ -|..+.+
T Consensus       152 P~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~~~  231 (477)
T PF11700_consen  152 PDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVAFLI  231 (477)
T ss_pred             HhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHHHH
Confidence            999999888                          88888766555566554444433221111      11 3666665


Q ss_pred             HHHHHHHHH-HHhhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHHH
Q 011277          214 SIVPAAILC-LAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFI  292 (489)
Q Consensus       214 ~~i~~~~~~-~~~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (489)
                      .++--+++. ...+++||.|+.   + ..++..+.+         +...+++.+          .+++..+.|.....++
T Consensus       232 ~a~ww~vfsiP~~~~~~~~~~~---~-~~~~~~~~~---------~~g~~~l~~----------t~k~~~~~~~~~~fLi  288 (477)
T PF11700_consen  232 VALWWLVFSIPLFLWLPDRPGP---R-PLPSGSSYL---------RFGFKRLWR----------TFKEIRKLRQLFLFLI  288 (477)
T ss_pred             HHHHHHHHHHHHHHhCCCCCCC---C-CCCcchhHH---------HHHHHHHHH----------HHHHHHhChHHHHHHH
Confidence            444433333 334556665431   0 000000000         011111110          1222222233333333


Q ss_pred             HHHHHHHHhhhhHHHHHHhHH-HHHHhcCCCc---chHHHHHHHHHHHHHHHHHHHhhhcCCc--hhHHHhhHHHHHHHH
Q 011277          293 GSTLFALQQLSGINAIFYFSS-SVFKSAGLSS---GLANVFVGIANLLGSVVAMVLMDKLGRK--ALLQWSFFSMAVSMA  366 (489)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~---~~~~~~~~i~~~~g~~~~g~l~dr~grr--~~~~~~~~~~~i~~~  366 (489)
                      +.+++.-    +.+.+..... ..-+..+++.   ....+...+..++|+++.+++.||+|.|  +++........+..+
T Consensus       289 a~~l~~d----g~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~  364 (477)
T PF11700_consen  289 AYFLYSD----GVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPL  364 (477)
T ss_pred             HHHHHHH----HHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHH
Confidence            3333221    2222221111 1112344443   3455667788899999999999999998  776665544433222


Q ss_pred             HHHH--Hhhcc-CCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 011277          367 IQVA--ASSSY-IPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLL  443 (489)
Q Consensus       367 ~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~  443 (489)
                      ....  ..... .......++ .. . ..+. +..+..+....+.+|+.|+++.+.-.|+....++..++++|++++.+.
T Consensus       365 ~g~~G~~~~~~g~~~~~~f~~-~a-~-~~G~-~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~  440 (477)
T PF11700_consen  365 YGLFGFWPSFFGLKSPWEFWV-LA-V-LIGL-FMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLIT  440 (477)
T ss_pred             HHHHHhhhcccCcccHHHHHH-HH-H-HHHH-HhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2111  11100 111112121 11 1 1111 111234566778999999999999999999999999999999999888


Q ss_pred             HHhC-CchhhHHHHHHHHHHHHHHHhhcccCCCCC
Q 011277          444 EQLG-PQLLYSIFGTFCLMAVAFVKRNVVETKGKS  477 (489)
Q Consensus       444 ~~~g-~~~~~~~~~~~~~~~~~~~~~~~~et~~~~  477 (489)
                      +..+ .+..+....++.+++.+++ ..+++.|+|.
T Consensus       441 ~~tg~~r~g~~~l~~lf~~gl~ll-~~v~~~~g~~  474 (477)
T PF11700_consen  441 DATGSQRYGFLFLLVLFLIGLILL-FFVDVEKGRE  474 (477)
T ss_pred             HHhCCchhHHHHHHHHHHHHHHHH-hhccchhhhh
Confidence            8776 4566666666666666655 5677777764

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK09848 glucuronide transporter; Provisional

Probab=99.69  E-value=1.1e-14  Score=146.52  Aligned_cols=328  Identities=15%  Similarity=0.154  Sum_probs=174.8

Q ss_pred             hhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhc----hhhHHH-HHhHHHHHHHHHHHh-h----cch--HHH
Q 011277           76 SISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGV----GRRRAF-QLCALPMIIGASISA-T----TRN--LIG  143 (489)
Q Consensus        76 ~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~----GRr~~~-~~~~~~~~i~~~l~~-~----~~~--~~~  143 (489)
                      .+.+.+|++  ..+.|.+.+...+..++..++.|.++||.    |||+.+ ..+.+...+..++.. .    +.+  ...
T Consensus        34 y~~~~~gl~--~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (448)
T PRK09848         34 YYTDVAGVG--AAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSKVVY  111 (448)
T ss_pred             HHHHHcCCC--HHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchHHHH
Confidence            344555765  45678999999999999999999999986    877765 455554444444432 1    111  222


Q ss_pred             HHHHHHHHhhhcccccccccccccccCC-cccchhhhhHHHHHH-----HHHHHHHHHhhcccccC-C-ch--hHHHHHH
Q 011277          144 MLLGRFVVGTGMGLGPTVAALYVTEVSP-PFVRGTYGAFIQIAT-----CLGLMGSLLIGIPVKEI-A-GW--WRICFWV  213 (489)
Q Consensus       144 l~~~R~l~G~g~g~~~~~~~~~i~e~~~-~~~Rg~~~~~~~~~~-----~~G~~~g~~~~~~l~~~-~-~~--wr~~f~~  213 (489)
                      .++.-++.+++.+...+...++..|..+ +++|.+..++-..+.     .++...+|+++...... . ++  |+..+  
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~--  189 (448)
T PRK09848        112 AYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKNSSPEEMVSVYHFWTIVL--  189 (448)
T ss_pred             HHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHH--
Confidence            3444566677776666555566666664 467888766654432     23445555554332111 1 11  33222  


Q ss_pred             HHHHHHHH-HHHhhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHHH
Q 011277          214 SIVPAAIL-CLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFI  292 (489)
Q Consensus       214 ~~i~~~~~-~~~~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (489)
                       .+...+. .+.....+|++.    + +.                            ++......++.++++|++.....
T Consensus       190 -~v~~~~~~~~~~~~~~e~~~----~-~~----------------------------~~~~~~~~~~~l~~n~~f~~~~~  235 (448)
T PRK09848        190 -AIAGMVLYFICFKSTRENVV----R-IV----------------------------AQPSLKISLQTLKRNRPLFMLCI  235 (448)
T ss_pred             -HHHHHHHHHHHHcCcEeccC----C-Cc----------------------------cCCCHHHHHHHHhCCchHHHHHH
Confidence             1222222 222233444321    0 00                            00001122455667777766554


Q ss_pred             HHHHHHHHhhhhHHHHHHhHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHh
Q 011277          293 GSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAAS  372 (489)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~  372 (489)
                      ..++............++|..+.++......++......++.+++.++.+++.||+|+|+.+..+..+..++...+... 
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~-  314 (448)
T PRK09848        236 GALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWV-  314 (448)
T ss_pred             HHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHc-
Confidence            4444333222212222333332222111111222233345677788899999999999999888877666655444321 


Q ss_pred             hccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCc-------hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011277          373 SSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPS-------RIRAKAMAVCMSVHWVINFFVGLLFLRLLEQ  445 (489)
Q Consensus       373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~-------~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~  445 (489)
                          +. ...+......++..++.... .+......+|..|.       +.++...|+.+....++..+++.+.+.+++.
T Consensus       315 ----~~-~~~~~~~~~~~l~g~G~~~~-~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~  388 (448)
T PRK09848        315 ----SV-WSLPVALVALAIASIGQGVT-MTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGL  388 (448)
T ss_pred             ----Cc-hhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                11 11111122222222322222 23344566666653       3468899999999999999999888777765


Q ss_pred             hCC
Q 011277          446 LGP  448 (489)
Q Consensus       446 ~g~  448 (489)
                      .|+
T Consensus       389 ~G~  391 (448)
T PRK09848        389 SGY  391 (448)
T ss_pred             cCC
Confidence            553

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.68  E-value=3.8e-15  Score=150.67  Aligned_cols=335  Identities=12%  Similarity=0.048  Sum_probs=176.8

Q ss_pred             hhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhh----hchh-hHHHHHhHHHHHHHHHHHhhcch------HHHHHHH
Q 011277           79 LDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIAD----GVGR-RRAFQLCALPMIIGASISATTRN------LIGMLLG  147 (489)
Q Consensus        79 ~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~D----r~GR-r~~~~~~~~~~~i~~~l~~~~~~------~~~l~~~  147 (489)
                      +.+|++  ....|.+..+.-+-.++..++.|.++|    |+|| ||.++.+.+..+++..+....++      +..+++.
T Consensus        35 ~v~Gls--~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~~~~~~~~~~~~  112 (473)
T PRK10429         35 DVVGLS--VGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFEGTAQYVFVCVT  112 (473)
T ss_pred             HhcCCC--HHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCCccHHHHHHHHH
Confidence            344665  445677888888888899999999999    6799 55566677777766555543221      3345555


Q ss_pred             HHHHhhhcccccccccccccccC-CcccchhhhhHHHHHHHHHHHHHHHhhccc----c---cCCchhHHHHHHHHHHHH
Q 011277          148 RFVVGTGMGLGPTVAALYVTEVS-PPFVRGTYGAFIQIATCLGLMGSLLIGIPV----K---EIAGWWRICFWVSIVPAA  219 (489)
Q Consensus       148 R~l~G~g~g~~~~~~~~~i~e~~-~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l----~---~~~~~wr~~f~~~~i~~~  219 (489)
                      -++.+++.........++..|+. ++++|.+..++-.....+|..+.+.+..++    .   +..+ |++..++.++..+
T Consensus       113 ~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g-~~~~~~i~~~~~~  191 (473)
T PRK10429        113 YILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFG-FQMFTLVLIAFFI  191 (473)
T ss_pred             HHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhh-HHHHHHHHHHHHH
Confidence            66667776666667777889999 689999988885555555433322222111    1   1112 4665554433333


Q ss_pred             HHH-HHhhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHHHHHHHHH
Q 011277          220 ILC-LAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFA  298 (489)
Q Consensus       220 ~~~-~~~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (489)
                      +.. +..+..+|.++.    .+.++                       .++++......++.++++++++..+...++..
T Consensus       192 ~~~~~~~~~~~e~~~~----~~~~~-----------------------~~~~~~~~~~~~~~~~~n~~~~~ll~~~~~~~  244 (473)
T PRK10429        192 VSTIITLRNVHEVYSS----DNQVS-----------------------AEGSHLTLKDIVALIYKNDQLSCLLGMALAYN  244 (473)
T ss_pred             HHHHHHHcCceecCCc----ccccc-----------------------ccccCCCHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            322 223334553210    00000                       00000001112333455666655544433332


Q ss_pred             HHhhhhHHHHHHhHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCC
Q 011277          299 LQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPG  378 (489)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~  378 (489)
                      ...........||..+..+. ....+.......++.+++.++.+++.||+|+|+.+..+.....++.+....... ..+.
T Consensus       245 ~~~~~~~~~~~y~~~y~~~~-~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~-~~~~  322 (473)
T PRK10429        245 IASNIINGFAIYYFTYVIGD-ADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGL-AAPH  322 (473)
T ss_pred             HHHHHHhhheeeEEEEECCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhc-cCch
Confidence            22111111112222211111 001123334445777888889999999999999887776554444433322110 1111


Q ss_pred             chhhHHHHHHHHHHHHHHhcCccccccccccccCC-------chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 011277          379 SASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFP-------SRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGP  448 (489)
Q Consensus       379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-------~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~  448 (489)
                      .  .+..+...++..++.+. ..+....+.+|..+       .+..|...+....+..++..+++.+.+.+++..|+
T Consensus       323 ~--~~~~~i~~~l~g~~~~~-~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~Gy  396 (473)
T PRK10429        323 N--ALLIVIAGILLNIGTAL-FWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLIGY  396 (473)
T ss_pred             h--HHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            1  11111112222222221 22344557777744       33345567888888999999999888887776553

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.67  E-value=3.4e-14  Score=142.01  Aligned_cols=331  Identities=16%  Similarity=0.185  Sum_probs=209.2

Q ss_pred             hhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhh----hchhhHHHH-HhHHHHHHHHHHHhhc-c-------hHHH
Q 011277           77 ISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIAD----GVGRRRAFQ-LCALPMIIGASISATT-R-------NLIG  143 (489)
Q Consensus        77 i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~D----r~GRr~~~~-~~~~~~~i~~~l~~~~-~-------~~~~  143 (489)
                      +.+.++++.  ...|++....-+-.++-.++.|.++|    |+|||+.++ .+.+..+++.++.... +       ....
T Consensus        28 ~~~~~gl~~--~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~~~  105 (428)
T PF13347_consen   28 YTDVLGLSP--ALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKLVW  105 (428)
T ss_pred             HHHHcCCCH--HHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhHHHH
Confidence            344446653  34566666666677788889999999    899877765 5667777777666655 3       2334


Q ss_pred             HHHHHHHHhhhcccccccccccccccCC-cccchhhhhHHHHHHHHHHHHHHHhhcccccCCc------hhHHHHHHHHH
Q 011277          144 MLLGRFVVGTGMGLGPTVAALYVTEVSP-PFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAG------WWRICFWVSIV  216 (489)
Q Consensus       144 l~~~R~l~G~g~g~~~~~~~~~i~e~~~-~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~------~wr~~f~~~~i  216 (489)
                      +.+.-++..++.........++..|..+ +++|.+..+.-.....+|.++...+...+.+..+      .|++..++.++
T Consensus       106 ~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~i  185 (428)
T PF13347_consen  106 LFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAI  185 (428)
T ss_pred             HHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHH
Confidence            5666777788888888888889999998 5789999999888888887544444333221111      36887776555


Q ss_pred             HHHHHHHH-hhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHHHHHH
Q 011277          217 PAAILCLA-MVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGST  295 (489)
Q Consensus       217 ~~~~~~~~-~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (489)
                      ..++..+. .+..+|.+      ++.++                        ++++.+-...++..+++|+++......+
T Consensus       186 v~~v~~~i~~~~~ke~~------~~~~~------------------------~~~~~~~~~~~~~~~~nr~~~~l~~~~~  235 (428)
T PF13347_consen  186 VGLVFFLITFFFVKERS------VEVTE------------------------QEKKISLRDSLRSLFRNRPFRILLLAFF  235 (428)
T ss_pred             HHHHHhhhhhheeeecc------ccccc------------------------cccccccccchhhhcccchHHHHHHHHH
Confidence            55444333 34455510      00000                        0011112234566777888887776665


Q ss_pred             HHHHHhhhhHHHHHHhHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhcc
Q 011277          296 LFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSY  375 (489)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~  375 (489)
                      +..+..........||..+..+..+ ..+.......++.+++.++.++++||+|+|+....+..+..++.........  
T Consensus       236 ~~~~~~~~~~~~~~y~~~~vl~~~~-~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~--  312 (428)
T PF13347_consen  236 LQWLAFALMNTFLPYYFTYVLGNEG-LISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGP--  312 (428)
T ss_pred             HHHhhhhhhhhHHHHHHHHHhcCch-hhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHh--
Confidence            5544443333344566655555442 2344556677888899999999999999999998888877777666554431  


Q ss_pred             CCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCc-------hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 011277          376 IPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPS-------RIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLG  447 (489)
Q Consensus       376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~-------~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g  447 (489)
                        +.  .+.......+.+++.+. ....++.+.+|+.+.       +..|...|+.+....++..+++.+...+++..|
T Consensus       313 --~~--~~~~~i~~~l~gi~~~~-~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~G  386 (428)
T PF13347_consen  313 --GS--PWLVLILFILAGIGYGA-FFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALVG  386 (428)
T ss_pred             --hh--HHHHHHHHHHhHhhhcc-cccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHhC
Confidence              11  11112222222333222 235667788888763       446888888899999999999988777776554

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.64  E-value=4.6e-13  Score=126.63  Aligned_cols=398  Identities=14%  Similarity=0.118  Sum_probs=236.8

Q ss_pred             CCcchHHHHHHHHHHHHhhhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHH
Q 011277           44 PSWKLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQL  123 (489)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~  123 (489)
                      +.+++.|..++++++-++..+...-.+.+....+..-++ +.+  ..-|..-+|.+-+..-.+..-|+.|++|-|..+++
T Consensus        38 rVy~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~Yg-s~~--~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~ll  114 (480)
T KOG2563|consen   38 RVYPRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNSFYG-SSS--AADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLL  114 (480)
T ss_pred             ccchhHhHHHHHHHHHHhcCcchheeehhHHHHHHHHhc-chH--HHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHH
Confidence            356666666666676666665554444444444444455 322  23477778888888888999999999999999999


Q ss_pred             hHHHHHHHHHHHhhcc------hHH--HHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHH
Q 011277          124 CALPMIIGASISATTR------NLI--GMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLL  195 (489)
Q Consensus       124 ~~~~~~i~~~l~~~~~------~~~--~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~  195 (489)
                      +..+.++|+.+-..+.      .++  ....+..+.+.+.-........+..-|+|+++|..+..+-.+++.+|...+.+
T Consensus       115 gt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~l  194 (480)
T KOG2563|consen  115 GTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFL  194 (480)
T ss_pred             HHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhh
Confidence            9999999999876553      334  56678888888776666666678888999999999999888888888877777


Q ss_pred             hhcccccCC----c-hhHH--HHHH-HHHHHHHHHHHhhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhh
Q 011277          196 IGIPVKEIA----G-WWRI--CFWV-SIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKL  267 (489)
Q Consensus       196 ~~~~l~~~~----~-~wr~--~f~~-~~i~~~~~~~~~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (489)
                      +...+....    + .|..  +|+. .++..+.+.+..+..+|.|+.     .+..+....                   
T Consensus       195 lppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~t-----Pps~s~~~~-------------------  250 (480)
T KOG2563|consen  195 LPPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPT-----PPSASQAAL-------------------  250 (480)
T ss_pred             ccceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC-----CCchhHhhh-------------------
Confidence            765443222    1 1433  2332 222222222223333443321     111100000                   


Q ss_pred             ccCCCCcchhHHHhhhccchhHHHHHHHHHHHHhhhhHHHHHHhHHHHHH---hcCCCcchHHHHHHHHHHHHHHHHHHH
Q 011277          268 DRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFK---SAGLSSGLANVFVGIANLLGSVVAMVL  344 (489)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~i~~~~g~~~~g~l  344 (489)
                       + +..-..+.++.++++++.........-    ...++..++.....+.   ..+...|.......++..+++.+.|.+
T Consensus       251 -~-~~~f~~si~~~~~n~~F~il~~~ygi~----~g~F~~l~~~l~~~l~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii  324 (480)
T KOG2563|consen  251 -Q-DASFPKSIKSCFKNRQFIILAICYGIG----LGLFNSLSTLLNLALCPSGYEGVFAGYIGALMIVAGMLGALASGII  324 (480)
T ss_pred             -h-cCcHHHHHHHHHcCccHHHHHHHHhhh----HHHHHHHHHHhhhccccccCCccccchhHHHHHHHHHHHHHHHHhh
Confidence             0 111233566778888776554332221    1112222222221222   233457888888889999999999999


Q ss_pred             hhhcCCch-hHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHH
Q 011277          345 MDKLGRKA-LLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAV  423 (489)
Q Consensus       345 ~dr~grr~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~  423 (489)
                      .||.+.-+ ..........++. +...............+.    .......+..+..|+...+..|.-=+..=++..|+
T Consensus       325 ~Dktk~fk~~~~v~~~~~~v~~-~~l~~~t~~~~~~viv~~----t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGl  399 (480)
T KOG2563|consen  325 ADKTKKFKLTTLVLYLFALVGT-LMLLTCTLFLGDSVIVFT----TCGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGL  399 (480)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHH-HHHHHhhccCCceEehhh----hHHHHHHhhcCCCCcceeeeeeeccccCCccccee
Confidence            99987633 3333333333332 111111111111111111    11112234556778888888887766778889999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhC----CchhhHHHHHHHHHHHHHHHhhcccCCCCCHH
Q 011277          424 CMSVHWVINFFVGLLFLRLLEQLG----PQLLYSIFGTFCLMAVAFVKRNVVETKGKSLQ  479 (489)
Q Consensus       424 ~~~~~~~~~~~~~~~~~~l~~~~g----~~~~~~~~~~~~~~~~~~~~~~~~et~~~~~~  479 (489)
                      .+..+.+.+++..+......+..+    +...-..+...++....+..+..|+-|++..|
T Consensus       400 l~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~lva~~r~~y~R~~~e  459 (480)
T KOG2563|consen  400 LNLSGQIFGVILVFIMGILAEDLGPPGNTFPANIFLTVSALLGAILVAFFRPDYRRLRAE  459 (480)
T ss_pred             EEeehhHHHHHHHHHHHHHhhccCCCCCCccchhHhHHHHHHHHHHHhhhhhhHHhHhhh
Confidence            999999988888888777766665    33334455566666666665556655555444

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.63  E-value=9.5e-15  Score=128.87  Aligned_cols=358  Identities=18%  Similarity=0.137  Sum_probs=191.5

Q ss_pred             hhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhh-chhhHHHHHhHHHHHHHHHHHh---hcchHHHHHHHHHHH
Q 011277           76 SISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADG-VGRRRAFQLCALPMIIGASISA---TTRNLIGMLLGRFVV  151 (489)
Q Consensus        76 ~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr-~GRr~~~~~~~~~~~i~~~l~~---~~~~~~~l~~~R~l~  151 (489)
                      ++..|.+++.  .+..++-+.|.+-..+-++++|++.|| +|-|..-++-+....+|.++.+   .++.+|.+.++|++-
T Consensus        69 ~fk~d~ni~~--akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Ggi~~aFw~M~~GRF~F  146 (459)
T KOG4686|consen   69 DFKLDSNIEY--AKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGGISHAFWTMLAGRFLF  146 (459)
T ss_pred             hhhcccccce--eeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhheee
Confidence            3344444433  334577888888888999999999995 7877655555555556666654   578999999999999


Q ss_pred             hhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHH--HHHHHHHHHHHHHhhhcc
Q 011277          152 GTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICF--WVSIVPAAILCLAMVFCA  229 (489)
Q Consensus       152 G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f--~~~~i~~~~~~~~~~~~~  229 (489)
                      |+|.-........|+.-|+..+|.+.++++.....-+|...-..+..++.+..+   .+|  ..--..++.+.+-.....
T Consensus       147 GIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly~~~~---~~~~~~ghT~LG~~l~~~~~tc~  223 (459)
T KOG4686|consen  147 GIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLYDTMG---RMFPGVGHTLLGLWLCFEVKTCK  223 (459)
T ss_pred             ccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHHHHHH---HhcccchHHHHHHHHHHHHHHHH
Confidence            999877777888999999999999999998877777764322222111111000   000  000000000000000000


Q ss_pred             CChHHHHhcC-CHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhh-hccchhHHHHHHHHHHHHhhhhHHH
Q 011277          230 ESPHWLYKKG-RTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELL-YGRHFRVVFIGSTLFALQQLSGINA  307 (489)
Q Consensus       230 Esp~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  307 (489)
                      .|-......+ .++++++.+.+                 +++...+..+..+.. ..++++.+...++++....+-.+..
T Consensus       224 ~slical~lg~~D~rAerilh~-----------------e~g~~Ge~pkLtdv~~f~ppfw~~~iicv~yyva~fPFi~l  286 (459)
T KOG4686|consen  224 QSLICALSLGLSDDRAERILHL-----------------EEGFLGEEPKLTDVNTFYPPFWVLVIICVLYYVAWFPFITL  286 (459)
T ss_pred             HHHHHHHHhhhhhhHHHHHHhh-----------------hcCcccCCcccccccccCccHHHHHHHHHHHHHHHHHHhhh
Confidence            0000000011 11222222211                 111111112222211 2356666665555554433322222


Q ss_pred             HHHhHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHH-HHHHHHHHHhhccCCCchhhHHHH
Q 011277          308 IFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMA-VSMAIQVAASSSYIPGSASLYLSV  386 (489)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~  386 (489)
                      -..+.+.-++.+..+++...........+.+.+.|.++||+|++.....+..... ++...+.+.       ....+.. 
T Consensus       287 g~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~Ft-------~lsPy~~-  358 (459)
T KOG4686|consen  287 GPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFFT-------FLSPYTS-  358 (459)
T ss_pred             hHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHhh-------hccHHHH-
Confidence            2223333333333334544455556667788889999999999876654433222 222222111       1122222 


Q ss_pred             HHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhC-C---chhhHHHHHHHHHH
Q 011277          387 GGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLG-P---QLLYSIFGTFCLMA  462 (489)
Q Consensus       387 ~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g-~---~~~~~~~~~~~~~~  462 (489)
                        +.+.+..+++-.. ..|..++-+.|++.-+++.|++.++.+++-.+.|.+.+.+.|+-| +   ...|...+.+++..
T Consensus       359 --m~~lGLsysllAc-slWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~s  435 (459)
T KOG4686|consen  359 --MTFLGLSYSLLAC-SLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMALTS  435 (459)
T ss_pred             --HHHHhhhHHHHHH-HHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHHHH
Confidence              2222333322111 123456677899999999999999999999999988777766544 2   23344445555555


Q ss_pred             HHHH
Q 011277          463 VAFV  466 (489)
Q Consensus       463 ~~~~  466 (489)
                      ...+
T Consensus       436 vgil  439 (459)
T KOG4686|consen  436 VGIL  439 (459)
T ss_pred             HHHH
Confidence            4443

>PRK11462 putative transporter; Provisional

Probab=99.63  E-value=1.7e-13  Score=137.65  Aligned_cols=325  Identities=15%  Similarity=0.101  Sum_probs=174.4

Q ss_pred             hhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhh----chhhHHHH-HhHHHHHHHHHHHhhcch------HHHHHHH
Q 011277           79 LDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADG----VGRRRAFQ-LCALPMIIGASISATTRN------LIGMLLG  147 (489)
Q Consensus        79 ~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr----~GRr~~~~-~~~~~~~i~~~l~~~~~~------~~~l~~~  147 (489)
                      ..+|++  ....|.+..+.-+--++..++.|.++||    +|||+.++ ++.+.++++.++.-..++      ...+.+.
T Consensus        38 ~~~Gl~--~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y~~~~  115 (460)
T PRK11462         38 DIFGIP--AGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYAAIT  115 (460)
T ss_pred             HhhCCC--HHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHHHHHH
Confidence            344554  4445666666667778999999999995    79977665 455666666665544432      3334455


Q ss_pred             HHHHhhhcccccccccccccccCC-cccchhhhhHHHHHHHHHHHHHHHhhcccccC-------CchhHHHHHHHHHHHH
Q 011277          148 RFVVGTGMGLGPTVAALYVTEVSP-PFVRGTYGAFIQIATCLGLMGSLLIGIPVKEI-------AGWWRICFWVSIVPAA  219 (489)
Q Consensus       148 R~l~G~g~g~~~~~~~~~i~e~~~-~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~-------~~~wr~~f~~~~i~~~  219 (489)
                      -++..++.........++..|..+ ++||.+.+++...+..+|..+++++..++.+.       .+ |+....+.+++.+
T Consensus       116 ~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g-~~~~~~i~~ii~~  194 (460)
T PRK11462        116 YTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLG-FQGGIAVLSVVAF  194 (460)
T ss_pred             HHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhh-HHHHHHHHHHHHH
Confidence            555666666666667778899987 78999999999888888766555543332111       13 4555544434333


Q ss_pred             HHHHH-hhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHHHHHHHHH
Q 011277          220 ILCLA-MVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFA  298 (489)
Q Consensus       220 ~~~~~-~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (489)
                      +..+. ....+|.++     .+.+                            +......++..+++++++.......+..
T Consensus       195 i~~~i~~~~~kE~~~-----~~~~----------------------------~~~~~~~l~~~~~Nk~~~~l~~~~~~~~  241 (460)
T PRK11462        195 MMLAFCFFTTKERVE-----APPT----------------------------TTSMREDLRDIWQNDQWRIVGLLTIFNI  241 (460)
T ss_pred             HHHHHHHhcceeccC-----CCcc----------------------------CCCHHHHHHHHhCChHHHHHHHHHHHHH
Confidence            33322 222333210     0000                            0000112344556677665544333332


Q ss_pred             HHhhhhHHHHHHhHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCC
Q 011277          299 LQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPG  378 (489)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~  378 (489)
                      ...........||..+.++... ..+.......++.+++.++++++.||+++|+....+.....+...+.....    ..
T Consensus       242 ~~~~~~~~~~~y~~~y~~g~~~-~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~----~~  316 (460)
T PRK11462        242 LAVCVRGGAMMYYVTWILGTPE-VFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVP----MQ  316 (460)
T ss_pred             HHHHHHHhHhhhhhhhhcCChH-HHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhc----hh
Confidence            2222212223344433332211 112344556678888999999999999999876544433333222221111    11


Q ss_pred             chhhHHHHHHHHHHHHHHhcCccccccccccccCC-----chhhhhHH--HHHHHHHHHHHHHHHHHHHHHHHHhC
Q 011277          379 SASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFP-----SRIRAKAM--AVCMSVHWVINFFVGLLFLRLLEQLG  447 (489)
Q Consensus       379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-----~~~r~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~g  447 (489)
                      ..... . ...++..++. ....++.+.+.+|...     +..|..+.  +....+.+++..+++.+.+.+++..|
T Consensus       317 ~~~~~-~-~~~~l~g~~~-~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~~G  389 (460)
T PRK11462        317 ASITM-F-VFIFVIGVLH-QLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAYGG  389 (460)
T ss_pred             HHHHH-H-HHHHHHHHHH-HHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            11111 1 1111122221 1123344555665543     33555554  55568899999998888777776544

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.63  E-value=2.1e-15  Score=153.22  Aligned_cols=179  Identities=16%  Similarity=0.105  Sum_probs=127.9

Q ss_pred             ccchhhhh-hhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHH---HhhcchHHHHHH
Q 011277           71 NEPLESIS-LDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASI---SATTRNLIGMLL  146 (489)
Q Consensus        71 ~~~~~~i~-~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l---~~~~~~~~~l~~  146 (489)
                      ...+|.+. +++|++.+  +.++..+...++..++.++.|+++||+|||+++..+.++..++...   ...+++...+++
T Consensus       270 ~~~~p~~l~~~~g~s~~--~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (490)
T PRK10642        270 LTYMPSYLSHNLHYSED--HGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFA  347 (490)
T ss_pred             HHHHHHHHHHhcCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence            33556655 45676543  3456677788899999999999999999999988877655443332   223456777888


Q ss_pred             HHHHHhhhcccccccccccccccCCcccchhhhhH-HHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHHHHHh
Q 011277          147 GRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAF-IQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAM  225 (489)
Q Consensus       147 ~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~-~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~i~~~~~~~~~  225 (489)
                      +|++.|++.+........++.|.+|++.||+..++ ++++...|.+.+.+.+ .+.+..++|+.+++...++.++..+..
T Consensus       348 ~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g-~l~~~~~~~~~~~~~~~~~~~i~~~~~  426 (490)
T PRK10642        348 GLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAA-WLVESTQNLMMPAYYLMVVAVIGLITG  426 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCchHHHHHHHHHHHHHHHHH
Confidence            99999987776666677788999999999998886 6666655554444444 333333346777666556666666666


Q ss_pred             hhccCChHHHHhc-----CCHHHHHHHHHHHh
Q 011277          226 VFCAESPHWLYKK-----GRTAEAEAEFEKLL  252 (489)
Q Consensus       226 ~~~~Esp~~l~~~-----~~~~~~~~~~~~~~  252 (489)
                      +++||||+|+..+     +|.+|+++.+++++
T Consensus       427 ~~~pes~~~~~~~~~~~~~~~~~a~~~l~~~~  458 (490)
T PRK10642        427 VTMKETANRPLKGATPAASDIQEAKEILVEHY  458 (490)
T ss_pred             HHhccccCCCCCCccccccchhhHHHHhhccc
Confidence            7789999998754     88888888888775

>TIGR01272 gluP glucose/galactose transporter

Probab=99.58  E-value=1.7e-13  Score=130.17  Aligned_cols=275  Identities=17%  Similarity=0.152  Sum_probs=161.3

Q ss_pred             HhhcchHHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccC-----------
Q 011277          135 SATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEI-----------  203 (489)
Q Consensus       135 ~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~-----------  203 (489)
                      ++...+|+.++++-++.|.|.+...+....+++++.|++++++.+++.+..+.+|..++|+++..+...           
T Consensus         4 ~~~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~   83 (310)
T TIGR01272         4 AASQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVAT   83 (310)
T ss_pred             hHHhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhh
Confidence            345678999999999999999999999999999999999999999999999999999999987754311           


Q ss_pred             ----CchhHHHHHHHHHHHHHHHHHhhh--ccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchh
Q 011277          204 ----AGWWRICFWVSIVPAAILCLAMVF--CAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVK  277 (489)
Q Consensus       204 ----~~~wr~~f~~~~i~~~~~~~~~~~--~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (489)
                          ..+|+++|++.+....+..+.+.+  .||..      +  ++.++.                    .+.+..   +
T Consensus        84 ~~~~~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~------~--~~~~~~--------------------~~~~~~---~  132 (310)
T TIGR01272        84 ANAEAAKVHTPYLLLAGALAVLAIIFAFLPLPELQ------E--ADVARV--------------------SSGDTT---Q  132 (310)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCC------c--cccccc--------------------cccccc---c
Confidence                135899988543333333233222  34431      0  000000                    000000   0


Q ss_pred             HHHhhhccchhHHHHHHHHHHHHhhhhHHHHHHhHHHHHHh---cCCC---cchHHHHHHHHHHHHHHHHHHHhhhcCCc
Q 011277          278 FEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKS---AGLS---SGLANVFVGIANLLGSVVAMVLMDKLGRK  351 (489)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~---~~~~~~~~~i~~~~g~~~~g~l~dr~grr  351 (489)
                      .++.+++++.....+..+++.....    ....|.+..+.+   .+.+   .+........+..+|.++++++.||+|+|
T Consensus       133 ~~~~~~~~~~~l~~~~~f~yvg~e~----~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~  208 (310)
T TIGR01272       133 KTSAFQFTHLVLGALGIFVYVGAEV----SAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQG  208 (310)
T ss_pred             hhhHHhhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHH
Confidence            1122333343332222222221111    222223333322   2333   24555666788889999999999999999


Q ss_pred             hhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHH
Q 011277          352 ALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVI  431 (489)
Q Consensus       352 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~  431 (489)
                      +.+..+..+..+...+....     +.....+    .....+++.+ ...|.......+.+|+ ..+++.++. ..+.+|
T Consensus       209 ~~l~~~~~l~~~~~~l~~~~-----~~~~~~~----~~~l~g~~~s-~i~P~~~s~a~~~~~~-~~~~asai~-~~~~~G  276 (310)
T TIGR01272       209 RYLAFNAFLAVLLSIGAALT-----HGYVAMW----FVLALGLFNS-IMFPTIFSLALNALGR-HTSQGSGIL-CLAIVG  276 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHc-----CCHHHHH----HHHHHHHHHH-HHHHHHHHHHHhhhhh-hhhhhHHHH-HHHHhc
Confidence            88776655555443322211     1111111    1112222211 1234444456666664 345666664 677889


Q ss_pred             HHHHHHHHHHHHHHhCCchhhHHHH
Q 011277          432 NFFVGLLFLRLLEQLGPQLLYSIFG  456 (489)
Q Consensus       432 ~~~~~~~~~~l~~~~g~~~~~~~~~  456 (489)
                      +.+.|.+.+.+.|..|...+|.+..
T Consensus       277 g~i~P~l~G~lad~~g~~~a~~v~~  301 (310)
T TIGR01272       277 GAIVPLLQGSLADCLGIQLAFALPV  301 (310)
T ss_pred             chHHHHHHHHHHHhccchHHHHHHH
Confidence            9999998888888888777665433

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.56  E-value=4.8e-14  Score=135.46  Aligned_cols=370  Identities=18%  Similarity=0.172  Sum_probs=183.2

Q ss_pred             ceeeccchhhhhhh-cCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHH--HHHHHH-hh----c
Q 011277           67 LGVVNEPLESISLD-LGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMI--IGASIS-AT----T  138 (489)
Q Consensus        67 ~~~~~~~~~~i~~~-~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~--i~~~l~-~~----~  138 (489)
                      .++..+..+...++ .|++.+  +.|.+.+...+...+.+++.|.++||.|.||-++.......  .+.+.. ..    .
T Consensus        23 ~gi~~pF~~iWL~~~~GLs~~--~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~v~~pll~  100 (412)
T PF01306_consen   23 WGIFLPFFPIWLTQVAGLSGT--EIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFIYVFGPLLQ  100 (412)
T ss_dssp             HHHHHHHHHHHHHHHH---HH--HHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHHTHHHHHH
T ss_pred             HHHHHHHHHHHHccccCCCHH--HHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44455555555554 677644  57999999999999999999999999997665544332221  122211 11    1


Q ss_pred             chHH-HHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHH
Q 011277          139 RNLI-GMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVP  217 (489)
Q Consensus       139 ~~~~-~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~i~  217 (489)
                      .|.. ..+++-+..|+...+..++.-+|+.+....+  +.=-+-.-+..++|.+++..+++.+.+..  -+..||+....
T Consensus       101 ~n~~lg~iig~i~l~~~f~~~~~~~Ea~~er~sr~~--~feYG~~R~wGSig~ai~s~~~G~L~~i~--p~~~fwi~s~~  176 (412)
T PF01306_consen  101 SNFWLGAIIGGIYLGLVFNAGVPLSEAYAERVSRRN--GFEYGRARMWGSIGFAIASLLAGILFNIN--PNIIFWIASAA  176 (412)
T ss_dssp             TT-HHHHHHTTTTTTTTTTTHHHHHHHHHHHHHHHH--SS-HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHh--cCCcchHHHHhhHHHHHHHHHhheeeeeC--ccHHHHHHHHH
Confidence            2221 2222222333333333344444433332111  11112223444555555555544443321  36677876554


Q ss_pred             HHHHHHHhhh-ccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHHHHHHH
Q 011277          218 AAILCLAMVF-CAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTL  296 (489)
Q Consensus       218 ~~~~~~~~~~-~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (489)
                      +++..++.++ -|+.++.....+. +                        ..+.++.+.....++++.|+++...+....
T Consensus       177 ~~il~lll~~~~~~~~~~~~~~~~-~------------------------~~~~~~~~~~~~~~l~k~~~fw~~~l~v~g  231 (412)
T PF01306_consen  177 AIILLLLLLLLKPDVPPQAEVADA-L------------------------GAKKDKVSLKDVLSLFKMRNFWFFVLFVIG  231 (412)
T ss_dssp             HHHHHHHHHSS---SSSSS-SSTT-S------------------------SS------HHHHHHHTTSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCcCchhhhhhcc-c------------------------ccCCCCCcHHHHHHHhcchhHHHHHHHHHH
Confidence            4444444333 2332210000000 0                        000000111223456666766654432221


Q ss_pred             HHHHhhhhHHHHHHhHHHHHHhcCCC---cchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhh
Q 011277          297 FALQQLSGINAIFYFSSSVFKSAGLS---SGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASS  373 (489)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~  373 (489)
                      ........-.....|....++..+.+   .|.....--+.+.+.-.+..++.+|+|.|+.++++...+.+=........ 
T Consensus       232 ~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~-  310 (412)
T PF01306_consen  232 VAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFAT-  310 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT---
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhc-
Confidence            11110000001111111111111111   23344445567778888899999999999988777665554433332211 


Q ss_pred             ccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHhCCchhh
Q 011277          374 SYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCM-SVHWVINFFVGLLFLRLLEQLGPQLLY  452 (489)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~g~~~~~  452 (489)
                          +   .+.....-++-+..+.+..-+. .-|+++.+|++..++.+.+.. ....++..+.+...+.++|+.|...+|
T Consensus       311 ----~---~~~i~~~klLH~~e~~l~lva~-fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~ty  382 (412)
T PF01306_consen  311 ----N---PWVISLIKLLHALEFPLLLVAA-FKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTY  382 (412)
T ss_dssp             ----S---HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ----c---hHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHH
Confidence                1   1111222222222222211112 238899999999999999874 556677888888889999999988899


Q ss_pred             HHHHHHHHHHHHHHHhhcccCCCC
Q 011277          453 SIFGTFCLMAVAFVKRNVVETKGK  476 (489)
Q Consensus       453 ~~~~~~~~~~~~~~~~~~~et~~~  476 (489)
                      .+++.+.+...++..+.+++.|..
T Consensus       383 limg~iv~~~~li~~f~l~~~~~~  406 (412)
T PF01306_consen  383 LIMGLIVLPFTLISAFTLKKDKKQ  406 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHS--SSST
T ss_pred             HHHHHHHHHHHHHheeeecCCCcc
Confidence            999998888777777777765553

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=99.56  E-value=3e-12  Score=124.35  Aligned_cols=330  Identities=19%  Similarity=0.190  Sum_probs=195.5

Q ss_pred             cCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhh----chhhHHH-HHhHHHHHHHHHHHhhcch------HHHHHHHHH
Q 011277           81 LGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADG----VGRRRAF-QLCALPMIIGASISATTRN------LIGMLLGRF  149 (489)
Q Consensus        81 ~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr----~GRr~~~-~~~~~~~~i~~~l~~~~~~------~~~l~~~R~  149 (489)
                      +|++  ....|.+..+.-+--++..++.|.++||    +||||.+ +++.+.+++.+.++-.+++      .....+.-+
T Consensus        43 ~Gis--~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya~vtY~  120 (467)
T COG2211          43 FGLS--AALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIYALVTYM  120 (467)
T ss_pred             cCCc--HHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchHHHHHHHH
Confidence            3454  3334555555555567999999999994    8876665 5666888888888877663      334556677


Q ss_pred             HHhhhcccccccccccccccCC-cccchhhhhHHHHHHHHHHHHH-----HHhhccccc--CCchhHHHHHHHHHHHHHH
Q 011277          150 VVGTGMGLGPTVAALYVTEVSP-PFVRGTYGAFIQIATCLGLMGS-----LLIGIPVKE--IAGWWRICFWVSIVPAAIL  221 (489)
Q Consensus       150 l~G~g~g~~~~~~~~~i~e~~~-~~~Rg~~~~~~~~~~~~G~~~g-----~~~~~~l~~--~~~~wr~~f~~~~i~~~~~  221 (489)
                      +.+++.........++..|+.+ ++||.+..++-..+..+|.++.     |++...-.+  ..| |+..-++..+.+++.
T Consensus       121 l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g-~~~~~~~~~vi~~i~  199 (467)
T COG2211         121 LLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALG-YQGTALVLGVIGVIL  199 (467)
T ss_pred             HHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhh-HHHHHHHHHHHHHHH
Confidence            8888887777777788888885 6889999999888888875433     333322222  223 455544443444433


Q ss_pred             HHHhh-hccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHHHHHHHHHHH
Q 011277          222 CLAMV-FCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQ  300 (489)
Q Consensus       222 ~~~~~-~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (489)
                      .+..+ -..|         |..+....      +             +..+......+...+++|+++.......+....
T Consensus       200 ~l~~~~~v~E---------R~~~~~~~------~-------------~~~~~~~~~~~~~~~~Nrp~~~~l~~~l~~~~~  251 (467)
T COG2211         200 LLFCFFNVKE---------RVVETQPT------K-------------TGVKLKLKDSFLLIFKNRPLLLLLLMNLLLFIA  251 (467)
T ss_pred             HHHHHHHhhc---------ccCccccC------c-------------ccccccHHHHHHHHHccchHHHHHHHHHHHHHH
Confidence            33332 2222         22110000      0             000001111234566778877766533333222


Q ss_pred             hhhhHHHHHHhHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCch
Q 011277          301 QLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSA  380 (489)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  380 (489)
                      ...-.....||....++...............+.+.+.++..++.+|+|+|++..++.++..++..+......    +  
T Consensus       252 ~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~----~--  325 (467)
T COG2211         252 FNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPA----G--  325 (467)
T ss_pred             HHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcC----c--
Confidence            2211223345554444443333445556666777777889999999999999999988877777766654431    1  


Q ss_pred             hhHHHHHHHHHHHHHHhcCccccccccccccCC-------chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 011277          381 SLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFP-------SRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGP  448 (489)
Q Consensus       381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-------~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~  448 (489)
                      ...+.+...+...++.+ ...++++.+.+|...       .+.-|...+...++..++..+++++.+..+...|+
T Consensus       326 ~~~l~~~~~~i~~~g~~-~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~~Gy  399 (467)
T COG2211         326 SVVLIVVALIIAGVGTG-IANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILGAIGY  399 (467)
T ss_pred             chHHHHHHHHHHHHHhh-ccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            11222222222223222 346788888887753       33446667778888999999999888877776653

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=99.51  E-value=5.8e-13  Score=129.55  Aligned_cols=146  Identities=23%  Similarity=0.223  Sum_probs=119.4

Q ss_pred             HHHHHHHHHhhhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchh-hHHHHHhHHHHHH
Q 011277           52 HVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGR-RRAFQLCALPMII  130 (489)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GR-r~~~~~~~~~~~i  130 (489)
                      .+.+..+.+++.+.+.+++.+......++++.+.+....|++.+...+|..++++.+|..+.|.|. |+.++.+.++..+
T Consensus        35 si~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~  114 (488)
T KOG2325|consen   35 SIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAII  114 (488)
T ss_pred             hHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHH
Confidence            356667778888889998888877777776666555567999999999999999999999999995 6667788889999


Q ss_pred             HHHHH-hh---cc-hHHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhc
Q 011277          131 GASIS-AT---TR-NLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGI  198 (489)
Q Consensus       131 ~~~l~-~~---~~-~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~  198 (489)
                      |+++. +.   .+ .-+.++++|++.|+|.|.. .....|+++-...++|-++.+....+..+|..+||.++.
T Consensus       115 g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n~-a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~  186 (488)
T KOG2325|consen  115 GNLLYLALAYVPNGVKYLMLVARILTGVGVGNF-AVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQL  186 (488)
T ss_pred             HHHHHHHHHhcccchHHHHHHHHHHcCcCcccH-HHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHH
Confidence            99887 32   23 5678899999999997765 477789999999999999999888877777777777654

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.47  E-value=4e-11  Score=113.09  Aligned_cols=350  Identities=14%  Similarity=0.143  Sum_probs=189.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHH-HHHHHHHHHhhcch--HHH-HHHHHHHHhhhccccccccc
Q 011277           88 LAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCAL-PMIIGASISATTRN--LIG-MLLGRFVVGTGMGLGPTVAA  163 (489)
Q Consensus        88 ~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~-~~~i~~~l~~~~~~--~~~-l~~~R~l~G~g~g~~~~~~~  163 (489)
                      ..++...++..+-.++-+++.|.++|+.|+||....... +..+...+..++++  ++. .++.-.+..++.........
T Consensus        58 a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vfyd  137 (438)
T COG2270          58 AYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVFYD  137 (438)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhheehh
Confidence            345667777777777889999999999998877654443 33444444444444  443 44566777777777777888


Q ss_pred             ccccccCCcccchhhhhHHHHHHHHHHHHHHHhh---ccc---------------ccCCchhHHHHHHHHHHHHHHHHH-
Q 011277          164 LYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIG---IPV---------------KEIAGWWRICFWVSIVPAAILCLA-  224 (489)
Q Consensus       164 ~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~---~~l---------------~~~~~~wr~~f~~~~i~~~~~~~~-  224 (489)
                      +++.+..++++-++.+++-.....+|..+..+..   ...               .+... =|..+.+.++--++..+- 
T Consensus       138 s~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~-~ri~~~l~A~W~li~~iPm  216 (438)
T COG2270         138 SMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGED-VRITGLLAALWWLLFALPM  216 (438)
T ss_pred             hHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCcccccc-chhHHHHHHHHHHHHHhHH
Confidence            8999999998887776654333333322222111   001               11112 355555443332222222 


Q ss_pred             hhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHHHHHHHHHHHhhhh
Q 011277          225 MVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSG  304 (489)
Q Consensus       225 ~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (489)
                      +..+++.++     .+..+. +         ......+++.          ..+++..+.+.....+++.+++.-    +
T Consensus       217 ~~~v~~~~~-----~~~~~~-~---------~l~~g~k~L~----------~t~k~i~~~~~i~~FLiA~~~~~D----G  267 (438)
T COG2270         217 ILNVHDAEK-----ISSPPP-T---------ALRNGFKELK----------STFKEIRGRKNLVLFLIARFFYID----G  267 (438)
T ss_pred             Hhccccccc-----ccccch-H---------HHHHHHHHHH----------HHHHHHhcccchHHHHHHHHHHHh----h
Confidence            222333221     000000 0         0011111111          122333333333333333333221    2


Q ss_pred             HHHHHH----hHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCch
Q 011277          305 INAIFY----FSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSA  380 (489)
Q Consensus       305 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  380 (489)
                      .+.+..    |....++....+..+..+...+..++|+++.|++.||+|.|+++..+.++..+.++......     ...
T Consensus       268 v~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~-----~~~  342 (438)
T COG2270         268 VNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLE-----GEL  342 (438)
T ss_pred             HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHcc-----ccH
Confidence            222221    22222222222334555667788899999999999999999998887766555544333221     111


Q ss_pred             hhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-chhhHHHHHHH
Q 011277          381 SLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGP-QLLYSIFGTFC  459 (489)
Q Consensus       381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~-~~~~~~~~~~~  459 (489)
                      ..+ ..+.+++   .+-.+.......|.+++.|+++-++..|+.+..++..++.+|+.+....+..+. ...+....++.
T Consensus       343 ~f~-i~gll~g---~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll  418 (438)
T COG2270         343 DFW-ILGLLVG---TSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLL  418 (438)
T ss_pred             HHH-HHHHHHH---HhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence            111 1111111   111223345667999999999999999999999999999999998877766554 23333444444


Q ss_pred             HHHHHHHHhhcccCCCCC
Q 011277          460 LMAVAFVKRNVVETKGKS  477 (489)
Q Consensus       460 ~~~~~~~~~~~~et~~~~  477 (489)
                      .++.+. +.++|+.++++
T Consensus       419 ~iGl~~-L~~v~~~~~~~  435 (438)
T COG2270         419 LIGLLL-LLRVKVPGRRE  435 (438)
T ss_pred             HhhHhh-EEeecCCCCcc
Confidence            444443 34566654443

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.46  E-value=1.8e-13  Score=113.90  Aligned_cols=135  Identities=21%  Similarity=0.362  Sum_probs=113.4

Q ss_pred             HHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhcchHHHHHHHHHHHhhhcccccccccccccccCCccc
Q 011277           95 SMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFV  174 (489)
Q Consensus        95 s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~  174 (489)
                      +.+.++..++.++.|++.||+|||+.+..+..+..++.++....++++.+.+.+++.|++.+...+....++.|..|+++
T Consensus         5 ~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~   84 (141)
T TIGR00880         5 AGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPEE   84 (141)
T ss_pred             EeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhh
Confidence            34566778899999999999999999999999999999888888999999999999999999988889899999999999


Q ss_pred             chhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHHHHH-hhhccC
Q 011277          175 RGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLA-MVFCAE  230 (489)
Q Consensus       175 Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~i~~~~~~~~-~~~~~E  230 (489)
                      |++..++......+|...++.++..+.+..+ |++.+++......+..+. .+..||
T Consensus        85 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  140 (141)
T TIGR00880        85 RGVALGLMSAGIALGPLLGPPLGGVLAQFLG-WRAPFLFLAILALAAFILLAFLLPE  140 (141)
T ss_pred             hhHHHHHHHHhHHHHHHHhHHhHHHHhcccc-hHHHHHHHHHHHHHHHHHHhhcCCC
Confidence            9999999999999999988888877776666 688887755444443333 333454

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.37  E-value=2.5e-12  Score=134.23  Aligned_cols=139  Identities=14%  Similarity=0.021  Sum_probs=117.1

Q ss_pred             HHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhcchHHHHHHHHHHHhhhcccccccccccccccCC
Q 011277           92 LVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSP  171 (489)
Q Consensus        92 ~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~  171 (489)
                      +...+..++..+|.++.|+++||+|||+++..+.++.+++.++.+++++...+++.+++.|++.++..+....+++|++|
T Consensus       599 ~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~P  678 (742)
T TIGR01299       599 FVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELYP  678 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            44556668889999999999999999999999999999999999999888888899999999888888888899999999


Q ss_pred             cccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHHHHHhhhccCCh
Q 011277          172 PFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESP  232 (489)
Q Consensus       172 ~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~i~~~~~~~~~~~~~Esp  232 (489)
                      .++|++++++......+|.+++|++++.+.+..  ...+|++.++..++..++..++|||.
T Consensus       679 t~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~~--~~~pf~i~a~~lll~~ll~~~LPET~  737 (742)
T TIGR01299       679 SDKRATAFGFLNALCKAAAVLGILIFGSFVGIT--KAAPILFASAALACGGLLALKLPDTR  737 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence            999999999999999999999998876554432  35677766555555556666779973

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=99.33  E-value=3.2e-10  Score=109.46  Aligned_cols=140  Identities=24%  Similarity=0.305  Sum_probs=109.4

Q ss_pred             cCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhh-chhhHHHHHhHHHHHHHHHHHhhcc--hHHHHHHHHHHHhhhccc
Q 011277           81 LGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADG-VGRRRAFQLCALPMIIGASISATTR--NLIGMLLGRFVVGTGMGL  157 (489)
Q Consensus        81 ~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr-~GRr~~~~~~~~~~~i~~~l~~~~~--~~~~l~~~R~l~G~g~g~  157 (489)
                      +|++.++. .++..+...+-| +.++++|+++|| .|+|+++..+.+++.+|.++.+.+.  +...+.++-.+.++|.|.
T Consensus        56 Lg~~~~~A-~~l~~~y~slVY-~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl  133 (498)
T COG3104          56 LGFDETHA-TGLFSAYGSLVY-LTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGL  133 (498)
T ss_pred             CCcChHhh-HHHHHHHHHHHH-HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhcccc
Confidence            44665443 233333333333 667889999998 7999999999999999999998884  788899999999999999


Q ss_pred             ccccccccccccCCccc--chhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHHHH
Q 011277          158 GPTVAALYVTEVSPPFV--RGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCL  223 (489)
Q Consensus       158 ~~~~~~~~i~e~~~~~~--Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~i~~~~~~~  223 (489)
                      .=+....+++|.+|+++  |....+++.++.++|.+.+|++...+.+..+ |...|..+.+--...++
T Consensus       134 ~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g-~~~gF~~aavGm~~gl~  200 (498)
T COG3104         134 FKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYG-WHVGFGLAAVGMIIGLV  200 (498)
T ss_pred             ccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhC-HHHHHHHHHHHHHHHHH
Confidence            99999999999998643  6677888888899999999999888887777 68888876544333333

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.29  E-value=4.4e-11  Score=118.26  Aligned_cols=154  Identities=14%  Similarity=0.185  Sum_probs=115.3

Q ss_pred             chhhh-hhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhcchHHHHHHHHHHH
Q 011277           73 PLESI-SLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVV  151 (489)
Q Consensus        73 ~~~~i-~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l~~~R~l~  151 (489)
                      ..|.+ .+++|.+.  .+.++..+...++..++.++.|+++||+|||+.+..+.....+........++.+.+++.|++.
T Consensus       238 ~~p~~l~~~~~~~~--~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~  315 (393)
T PRK15011        238 NMPLFIINELHLPE--KLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLN  315 (393)
T ss_pred             HHHHHHHHHcCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            44544 45667654  3456666666667778999999999999999988877666555544455567788888899999


Q ss_pred             hhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHHHHHhhhccC
Q 011277          152 GTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAE  230 (489)
Q Consensus       152 G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~i~~~~~~~~~~~~~E  230 (489)
                      +++.|...+....+..|.+|+ +||++.++++....+|..+++.+++.+.+..+ |+..|++..+..++.++..++.||
T Consensus       316 ~~~~g~~~~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~  392 (393)
T PRK15011        316 AIYIGILGGIGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEIWN-YHAVFWFALVMIIATLFCLLRIKD  392 (393)
T ss_pred             HHHHHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHhhcC
Confidence            888777666667778899885 59999999988889999999988888777666 688888766666665555555544

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.27  E-value=5.7e-11  Score=115.15  Aligned_cols=154  Identities=23%  Similarity=0.326  Sum_probs=130.1

Q ss_pred             eeeccchhhhhhhc-CCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhH-HHHHhHHHHHHHHHHHhhcchHHHHH
Q 011277           68 GVVNEPLESISLDL-GFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRR-AFQLCALPMIIGASISATTRNLIGML  145 (489)
Q Consensus        68 ~~~~~~~~~i~~~~-~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~-~~~~~~~~~~i~~~l~~~~~~~~~l~  145 (489)
                      .......|.+.++. |.+  +.+.++..+...++..++.++.+++.||+|||+ .+..+..+..++.++....++.+.+.
T Consensus       192 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  269 (352)
T cd06174         192 YGLLTYLPLYLQEVLGLS--AAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLL  269 (352)
T ss_pred             HHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence            33444556666654 554  445678888999999999999999999999999 99999999999999999999999999


Q ss_pred             HHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHHHHH
Q 011277          146 LGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLA  224 (489)
Q Consensus       146 ~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~i~~~~~~~~  224 (489)
                      +..++.|++.+...+....++.|..|+++|++..+++.....+|..+++.+.+.+.+..+ |++.+++..+..++..+.
T Consensus       270 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~-~~~~~~~~~~~~~i~~i~  347 (352)
T cd06174         270 VALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGG-YGGVFLILAALALLAALL  347 (352)
T ss_pred             HHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-cchHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999988887776666 588888766655554443

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.27  E-value=1.2e-10  Score=114.32  Aligned_cols=223  Identities=15%  Similarity=0.141  Sum_probs=132.1

Q ss_pred             cccchhhhhhccccccCCCCCccchhhhhccc--cCCcc---c----CCCCCCcchHHHHHHHHHHHHhhhhccceeecc
Q 011277            2 WGRQREASMMYKRTSSRDRSSTFDVEETTALV--QNGTE---V----ENTNPSWKLSFPHVLVATLSSFLFGYHLGVVNE   72 (489)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~---~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   72 (489)
                      +||.+||+..+..-+..++.+.. +++..+..  .+.++   .    ...+++.|+.....+.+..+..+.|.+  .+..
T Consensus       215 k~~~~~A~~sl~~y~G~~~~~~~-~e~~~~e~~~~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~--ai~~  291 (485)
T KOG0569|consen  215 KGDEEEARKALKFYRGKEDVEAE-IEEMLREIEEEELEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGIN--AIFF  291 (485)
T ss_pred             cCCHHHHHHHHHHHhCCCcchhH-HHHHHHHHHHhccccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcc--eeHH
Confidence            68999999888877655443322 11111111  11110   0    012333333322233333333344433  2344


Q ss_pred             chhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhcc---hHH------H
Q 011277           73 PLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTR---NLI------G  143 (489)
Q Consensus        73 ~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~---~~~------~  143 (489)
                      ...++.++-|++.++.+  +.......-..+.++++..+.||+||||.++.+..++.+..++.....   +..      .
T Consensus       292 Yst~i~~~aG~~~~~a~--~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~  369 (485)
T KOG0569|consen  292 YSTSIFKTAGFTPEEAQ--YANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYL  369 (485)
T ss_pred             HHHHHHHHcCCCHHHHH--HHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence            44567888888766543  445555556678999999999999999999999999888877765431   111      1


Q ss_pred             HHHHHHHHhhhccc-ccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHH-
Q 011277          144 MLLGRFVVGTGMGL-GPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAIL-  221 (489)
Q Consensus       144 l~~~R~l~G~g~g~-~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~i~~~~~-  221 (489)
                      .+++.++..++.+. .-|+..-+.+|++|++.|..++++......+...+-...-.++.+..|-  ..|.+..++.++. 
T Consensus       370 ~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~--~~filF~i~~~~~~  447 (485)
T KOG0569|consen  370 CIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP--YVFILFVIPLAIFL  447 (485)
T ss_pred             HHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--hhhHHHHHHHHHHH
Confidence            23334443333332 2356778899999999999999998888887765554444444444442  4455444555544 


Q ss_pred             HHHhhhccCC
Q 011277          222 CLAMVFCAES  231 (489)
Q Consensus       222 ~~~~~~~~Es  231 (489)
                      +..+..+|||
T Consensus       448 i~~~~~lPET  457 (485)
T KOG0569|consen  448 IYLYRYLPET  457 (485)
T ss_pred             HHHHHhCccc
Confidence            4456779999

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=99.27  E-value=1.4e-09  Score=107.61  Aligned_cols=312  Identities=17%  Similarity=0.194  Sum_probs=177.8

Q ss_pred             HHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhcchHHHHHHHHHHHhhhcc--cccccccccccccCCcccc
Q 011277           98 LGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMG--LGPTVAALYVTEVSPPFVR  175 (489)
Q Consensus        98 ~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l~~~R~l~G~g~g--~~~~~~~~~i~e~~~~~~R  175 (489)
                      .+...+.++..|.++||+|||..+.+......+..+...+.. ++ +++   +.|+..+  .......+|++|....++|
T Consensus        72 ~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~-~~-~~~---~~~l~g~~~~~~s~~~a~vadis~~~~R  146 (463)
T KOG2816|consen   72 GLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG-YW-FFL---LLGLSGGFSAIFSVGFAYVADISSEEER  146 (463)
T ss_pred             HHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH-HH-Hhh---hcccccchhhhhhhhhhheeeccchhHH
Confidence            455568889999999999999999999888887776666555 33 333   5554433  3456777899999999999


Q ss_pred             hhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHH-HHHhhhccCChHHHHhcCCHHHHHHHHHHHhCC
Q 011277          176 GTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAIL-CLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGG  254 (489)
Q Consensus       176 g~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~i~~~~~-~~~~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~  254 (489)
                      ....++...+...+...+|..+..+....+. -.+|+++....++. .....++||+-+   .+.+++   ....+....
T Consensus       147 ~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~-a~~f~ia~~~~~~~~~y~~~~l~Esl~---~~~~~~---~~~~~~~~~  219 (463)
T KOG2816|consen  147 SSSIGLLSGTFGAGLVIGPALGGYLVKFLGI-ALVFLIAAASGILSLLYMLLFLPESLQ---EKERSD---ATLRELTPG  219 (463)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHhcCc-hHHHHHHHHHHHHHHHHHhhccccccC---cccccc---ccccccCCC
Confidence            9999999999999988888888776655553 56666654444443 344567888832   111111   000000000


Q ss_pred             CchhHHHHHHHhhccCCCCcchhHHHhhhccchhHH---HHHHHHHHHHhhhhHH-HHHHhHHHHHHhcCCCcchHHHHH
Q 011277          255 SHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVV---FIGSTLFALQQLSGIN-AIFYFSSSVFKSAGLSSGLANVFV  330 (489)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  330 (489)
                      .......             ...+....+.++.|..   ....+........+.. ..++|....++......+......
T Consensus       220 ~~~~~~~-------------~~~~~~~~~~~~~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s~~~~~~  286 (463)
T KOG2816|consen  220 SLDSSHV-------------ADAFQSLTKVGPDRLLLLLLLVAFLSSLPEAGGASDVLLLYLKAKFGWNKKEFSDLLSLV  286 (463)
T ss_pred             cccchhh-------------hhhhhhhcccCCCccchHHHHHHHHHHHHHhcCceeEEEEEEeeecCcCHHHHHHHHHHH
Confidence            0000000             0001111111111111   1111111111111100 111222221111111122233344


Q ss_pred             HHHHHHHHHHHH-HHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCcccccccccc
Q 011277          331 GIANLLGSVVAM-VLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLP  409 (489)
Q Consensus       331 ~i~~~~g~~~~g-~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  409 (489)
                      .+...++.++.. .+...+|.|+.+..|.....+......+....     +..+..     .....++....|......+
T Consensus       287 ~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~~~-----w~~~~~-----~v~~~~~~~~~pa~~s~~s  356 (463)
T KOG2816|consen  287 SILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFATET-----WMMFAA-----GVVVALAGIVFPAIRAFAS  356 (463)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhccc-----hhhhHH-----HHHHHhhcchhHHHHhHHH
Confidence            455556665554 67888898888777777776666665544321     111211     1112233344566667788


Q ss_pred             ccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011277          410 EIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLE  444 (489)
Q Consensus       410 e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~  444 (489)
                      -..+++.+++.+++...+..+.+.++|..++.++.
T Consensus       357 ~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~  391 (463)
T KOG2816|consen  357 ILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFA  391 (463)
T ss_pred             hhcccccccchhhHHHHHHHHhhhhhHHHHHHHHH
Confidence            88899999999999999999999999988776643

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.27  E-value=2.6e-11  Score=118.86  Aligned_cols=142  Identities=18%  Similarity=0.090  Sum_probs=115.1

Q ss_pred             hhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhcchH--HHHHHHHHHH
Q 011277           74 LESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNL--IGMLLGRFVV  151 (489)
Q Consensus        74 ~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~--~~l~~~R~l~  151 (489)
                      .+.+.++++.+.  .+.++..+.+.++..++.++.|+++||+|||+.+..+.++..++..+....++.  ..+....++.
T Consensus       228 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (377)
T TIGR00890       228 YKPYGQSLGLSD--GFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALV  305 (377)
T ss_pred             HHHHHHHcCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHH
Confidence            445567777653  345778888889999999999999999999999999988888888777766643  2344668888


Q ss_pred             hhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHH
Q 011277          152 GTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPA  218 (489)
Q Consensus       152 G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~i~~  218 (489)
                      |++.|...+..+.++.|.+|+++|++..+++.....+|..+++.+.+.+.+..+ |++.|++.++..
T Consensus       306 g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~f~~~~~~~  371 (377)
T TIGR00890       306 FFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIG-FEYTFIVTGAFA  371 (377)
T ss_pred             HHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhc-hhhHHHHHHHHH
Confidence            998888877788889999999999999999999999999999988877776666 688887654433

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.27  E-value=4.7e-11  Score=118.38  Aligned_cols=150  Identities=16%  Similarity=0.092  Sum_probs=116.7

Q ss_pred             chhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhcchHHHHHHHHHHHh
Q 011277           73 PLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVG  152 (489)
Q Consensus        73 ~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l~~~R~l~G  152 (489)
                      .++.+..+.|.+    +.++..+.+.++..++.++.|++.||+|||+.+..+.++..++.++.+..++.+.+++.+++.|
T Consensus       238 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G  313 (399)
T PRK05122        238 FITLYYAARGWD----GAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTG  313 (399)
T ss_pred             HHHHHHHHcccc----cchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            344445555552    1245567778888899999999999999999999998888888888888888888888999999


Q ss_pred             hhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHHHHHhhh
Q 011277          153 TGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVF  227 (489)
Q Consensus       153 ~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~i~~~~~~~~~~~  227 (489)
                      ++.+...+.....+.|..|+++||++.++++....+|..+++.+.+.+.+..+ |++.|++.....++..+...+
T Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~  387 (399)
T PRK05122        314 FGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFG-YPSIFLAAALAALLGLALTWL  387 (399)
T ss_pred             HhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHHHHH
Confidence            99988887777778899999999999999999999987766666666666556 688888765555544444333

>TIGR00889 2A0110 nucleoside transporter

Probab=99.26  E-value=2.6e-11  Score=120.59  Aligned_cols=143  Identities=14%  Similarity=0.154  Sum_probs=113.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhcc----hHHHHHHHHHHHhhhcccccccccc
Q 011277           89 AEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTR----NLIGMLLGRFVVGTGMGLGPTVAAL  164 (489)
Q Consensus        89 ~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~----~~~~l~~~R~l~G~g~g~~~~~~~~  164 (489)
                      ..+...+...++..++.++.|+++||+|||+++..+.++.+++..+.....    +++.+++.+++.|++.+...+....
T Consensus       252 ~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~~  331 (418)
T TIGR00889       252 NASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISGSV  331 (418)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            347788888888889999999999999999999999999888776666532    2456677899999999888888888


Q ss_pred             cccccCCcccchhhhhHHH-HHHHHHHHHHHHhhcccccCCc-----hhHHHHHHHHHHHHHH-HHHhhhccCC
Q 011277          165 YVTEVSPPFVRGTYGAFIQ-IATCLGLMGSLLIGIPVKEIAG-----WWRICFWVSIVPAAIL-CLAMVFCAES  231 (489)
Q Consensus       165 ~i~e~~~~~~Rg~~~~~~~-~~~~~G~~~g~~~~~~l~~~~~-----~wr~~f~~~~i~~~~~-~~~~~~~~Es  231 (489)
                      +++|.+|+++||+..++++ ....+|..+||++++.+.+..+     .|+..|++.++..++. .+..++++|+
T Consensus       332 ~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~  405 (418)
T TIGR00889       332 FVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYS  405 (418)
T ss_pred             HHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence            9999999999999999997 6788899899998887665432     1788887654444433 3444556665

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.25  E-value=7.5e-11  Score=117.17  Aligned_cols=152  Identities=24%  Similarity=0.200  Sum_probs=120.9

Q ss_pred             chhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhcchHHHHHHHHHHHh
Q 011277           73 PLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVG  152 (489)
Q Consensus        73 ~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l~~~R~l~G  152 (489)
                      ..|.+.++.|.+.+  +.++..+.+.++..++.++.|+++||+|||+.+..+.+...++..+....++.+.+.+.-++.|
T Consensus       242 ~~p~~~~~~g~s~~--~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  319 (406)
T PRK11551        242 WLPSLLVGQGLSRS--QAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFAAG  319 (406)
T ss_pred             HHHHHHHhCCCChh--hhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            45777788777644  4567888888899999999999999999999998877777776666677778877778888889


Q ss_pred             hhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHHHHHhh
Q 011277          153 TGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMV  226 (489)
Q Consensus       153 ~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~i~~~~~~~~~~  226 (489)
                      ++.++..+....++.|.+|+++||+..++++....+|..+++.+++.+.+..++|...++......++..+..+
T Consensus       320 ~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~  393 (406)
T PRK11551        320 LFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAAL  393 (406)
T ss_pred             HHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHH
Confidence            88777777888899999999999999999999999999999998888776655567777665444444333333

>PRK12382 putative transporter; Provisional

Probab=99.22  E-value=9.6e-11  Score=115.85  Aligned_cols=146  Identities=17%  Similarity=0.139  Sum_probs=118.2

Q ss_pred             chhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhcchHHHHHHHHHHHh
Q 011277           73 PLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVG  152 (489)
Q Consensus        73 ~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l~~~R~l~G  152 (489)
                      ..|.+.++.+.+.    .++..+.+.++..+++++.|++.||+|||+.+..+..+..++.++....++.+.+.+.+++.|
T Consensus       238 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g  313 (392)
T PRK12382        238 FVSLYFASKGWAM----AGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAALTG  313 (392)
T ss_pred             HHHHHHHhcCCch----hHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence            3444555655532    245566677788899999999999999999999999888888888888888888888999999


Q ss_pred             hhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHHHH
Q 011277          153 TGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCL  223 (489)
Q Consensus       153 ~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~i~~~~~~~  223 (489)
                      ++.+...+.....+.|.+|+++||+..++++....+|..+++.+.+.+.+..+ |+..|++.....++..+
T Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~  383 (392)
T PRK12382        314 AGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFG-YPSVFLAGAISAVLGII  383 (392)
T ss_pred             HHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-chHHHHHHHHHHHHHHH
Confidence            99988877777788999999999999999999999999888888887777667 68888876554444433

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.18  E-value=1.4e-10  Score=116.87  Aligned_cols=150  Identities=11%  Similarity=0.071  Sum_probs=115.5

Q ss_pred             eeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhh--chhhHHHHH--hHHHHHHHHHHHhhcchHHHH
Q 011277           69 VVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADG--VGRRRAFQL--CALPMIIGASISATTRNLIGM  144 (489)
Q Consensus        69 ~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr--~GRr~~~~~--~~~~~~i~~~l~~~~~~~~~l  144 (489)
                      .....+|.+.+++|.+.  .+.++..+...++..++.++.|+++||  +++|+...+  +.++.+++.++....++++.+
T Consensus       259 ~~~~~l~~~~~~~g~s~--~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~  336 (455)
T TIGR00892       259 APIIFLVPYAKDKGVDE--YEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDYTGL  336 (455)
T ss_pred             chHHHHHHHHHHcCCCH--HHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhchHHHH
Confidence            33445676777877653  456788888888888999999999997  334443333  334444555566678899999


Q ss_pred             HHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHH
Q 011277          145 LLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAI  220 (489)
Q Consensus       145 ~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~i~~~~  220 (489)
                      ++.+++.|++.+...+....++.|..|+++||+..++++....+|..+|+.+++.+.+..+.|++.|++.++..++
T Consensus       337 ~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li  412 (455)
T TIGR00892       337 VIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVS  412 (455)
T ss_pred             HHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHH
Confidence            9999999999998888888899999999999999999999999999999999888776554368888876554433

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.17  E-value=4.9e-10  Score=114.48  Aligned_cols=159  Identities=11%  Similarity=0.033  Sum_probs=97.9

Q ss_pred             chhhhhhhcCCCCchhH---------HHH-HHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhcc---
Q 011277           73 PLESISLDLGFNGNTLA---------EGL-VVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTR---  139 (489)
Q Consensus        73 ~~~~i~~~~~~~~~~~~---------~~~-~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~---  139 (489)
                      ..|.+.++.|++.++..         ... ......++..+|.++.++++||+|||++++.+..+.+++..+.+...   
T Consensus       310 ~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~  389 (502)
T TIGR00887       310 NQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHL  389 (502)
T ss_pred             ccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhc
Confidence            46777778887543210         001 22334456667889999999999999999888877776665554322   


Q ss_pred             -hHHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCC--------c-hhHH
Q 011277          140 -NLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIA--------G-WWRI  209 (489)
Q Consensus       140 -~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~--------~-~wr~  209 (489)
                       +...+...-+...++..+..+....+.+|.+|++.|++..++.+....+|..+++.+...+.+..        + ++..
T Consensus       390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  469 (502)
T TIGR00887       390 STHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGH  469 (502)
T ss_pred             chhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchH
Confidence             11111111111222222334456677899999999999999999988888888877665554421        1 1244


Q ss_pred             HHHHHHHHHHHHHHHhhhccCC
Q 011277          210 CFWVSIVPAAILCLAMVFCAES  231 (489)
Q Consensus       210 ~f~~~~i~~~~~~~~~~~~~Es  231 (489)
                      .|++.++..++..+..+++|||
T Consensus       470 ~~~i~~~~~~~~~i~~~~lpEt  491 (502)
T TIGR00887       470 VLEIFALFMFLGILFTLLIPET  491 (502)
T ss_pred             HHHHHHHHHHHHHHHheEeccC
Confidence            5554444444444445677998

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.16  E-value=1.3e-10  Score=116.08  Aligned_cols=132  Identities=12%  Similarity=0.012  Sum_probs=110.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhcchHHHHHHHHHHHhhhccccccccccccc
Q 011277           88 LAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVT  167 (489)
Q Consensus        88 ~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~  167 (489)
                      .+.+++.+...++..++.++.|+++||+|||+.+..+.++.+++.++.++++|.+.+.+.+++.|++.+...+....++.
T Consensus       262 ~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~  341 (420)
T PRK09528        262 RVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVFKYIT  341 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34578888888888899999999999999999999999999998888888999999999999999988877777778899


Q ss_pred             ccCCcccchhhhhH-HHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHH
Q 011277          168 EVSPPFVRGTYGAF-IQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAI  220 (489)
Q Consensus       168 e~~~~~~Rg~~~~~-~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~i~~~~  220 (489)
                      |.+|++.|+...+. ++....+|..+++.+++.+.+..| ||..|...++..++
T Consensus       342 ~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G-~~~~f~~~~~~~~i  394 (420)
T PRK09528        342 LNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIG-FQGTYLILGGIVLL  394 (420)
T ss_pred             HHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhC-chHHHHHHHHHHHH
Confidence            99999999877654 567778888888888888777767 69888875444433

>PRK10054 putative transporter; Provisional

Probab=99.15  E-value=1.3e-09  Score=107.69  Aligned_cols=148  Identities=14%  Similarity=0.070  Sum_probs=97.9

Q ss_pred             HhcCCC---cchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHH
Q 011277          317 KSAGLS---SGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFV  393 (489)
Q Consensus       317 ~~~~~~---~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  393 (489)
                      +..+.+   .++......++..++.+..|+++||+|||+++..+.....++........+      .  +..+.......
T Consensus        36 ~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~~------~--~~~~~~~~~~g  107 (395)
T PRK10054         36 RQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVNN------V--TLVVLFFALIN  107 (395)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHhH------H--HHHHHHHHHHH
Confidence            344554   345556666778888999999999999999888777666655544433221      1  11111111111


Q ss_pred             HHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHhhcccC
Q 011277          394 LTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNVVET  473 (489)
Q Consensus       394 ~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~et  473 (489)
                      ...+ ...|....+.+|.+|++.|+++.++.....+++..++|.+...+.+ .++...|.+.+.++++..+.....+||+
T Consensus       108 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~~~i~~i~~~~~~~~~  185 (395)
T PRK10054        108 CAYS-VFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAAICSAFPLVFIQIWVQRS  185 (395)
T ss_pred             HHHH-HHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHHHHHHHHHHHHHHhcc
Confidence            2211 2245556678899999999999999999999999999988776654 6788888877776666655444445554


Q ss_pred             C
Q 011277          474 K  474 (489)
Q Consensus       474 ~  474 (489)
                      +
T Consensus       186 ~  186 (395)
T PRK10054        186 E  186 (395)
T ss_pred             c
Confidence            3

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=99.15  E-value=9.9e-08  Score=90.68  Aligned_cols=327  Identities=18%  Similarity=0.119  Sum_probs=175.9

Q ss_pred             hhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhch-----hhHHHHHh-HHHHHHHHHHHhh-----cc-------
Q 011277           78 SLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVG-----RRRAFQLC-ALPMIIGASISAT-----TR-------  139 (489)
Q Consensus        78 ~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~G-----Rr~~~~~~-~~~~~i~~~l~~~-----~~-------  139 (489)
                      ..|+++.  ....+...++..+- ....+.+|..||+.+     ||..|++. .+++..+..+..+     +.       
T Consensus         7 IvEL~vp--A~lv~~lval~~~~-ap~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~   83 (403)
T PF03209_consen    7 IVELGVP--AWLVALLVALHYLV-APLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSG   83 (403)
T ss_pred             HHHhccH--HHHHHHHHHHHHHH-HHHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHccccccccc
Confidence            3466654  22234455544433 356889999999999     88777654 4555554444432     22       


Q ss_pred             -hH-H--HHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHH
Q 011277          140 -NL-I--GMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSI  215 (489)
Q Consensus       140 -~~-~--~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~  215 (489)
                       .+ +  .....-.+.|+|.+...+...++++|..|+++|+++.++......+|..++.++.+.+.+..+--|..-.+..
T Consensus        84 ~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~~~  163 (403)
T PF03209_consen   84 PFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVIQG  163 (403)
T ss_pred             ccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHH
Confidence             11 2  2234567788888888888889999999999999999999999999988777765544332332354444432


Q ss_pred             HHHH--HHHHHhhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHHHH
Q 011277          216 VPAA--ILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIG  293 (489)
Q Consensus       216 i~~~--~~~~~~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (489)
                      ...+  ++.+...+-.|.+.       .+..     +               ..++++..-...++++..+++-+..+..
T Consensus       164 ~a~i~~~l~~ia~wg~E~r~-------~~~~-----~---------------~~~~~~~~f~~a~~~~~~~~~a~~f~~f  216 (403)
T PF03209_consen  164 VALIALLLNLIALWGQEPRR-------SRRA-----A---------------AAERPRPPFREAWRQVWASPQARRFFVF  216 (403)
T ss_pred             HHHHHHHHHHHHHHhcccCC-------cccc-----c---------------CCCCCCccHHHHHHHHHhCCChhHHHHH
Confidence            2222  22222333334311       0000     0               0001111112234455555655554433


Q ss_pred             HHHHHHHhhhhHHHHHHhHHHHHHhcCCCcc---hHHHHHHHHHHHHHHHHHHHhh-hcCCchhHHHhhHHHHHHHHHHH
Q 011277          294 STLFALQQLSGINAIFYFSSSVFKSAGLSSG---LANVFVGIANLLGSVVAMVLMD-KLGRKALLQWSFFSMAVSMAIQV  369 (489)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~~~~g~~~~g~l~d-r~grr~~~~~~~~~~~i~~~~~~  369 (489)
                      .++..+..+ ....+  ..|+--+..+++.+   ..+...+.+.++|-...+++.. |.++++...++.....++..++.
T Consensus       217 l~l~t~a~~-~QD~i--LEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii  293 (403)
T PF03209_consen  217 LFLGTLAFF-MQDVI--LEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALII  293 (403)
T ss_pred             HHHHHHHHH-hhHHH--cCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHH
Confidence            222211111 11111  11111122334433   4556677888888888888766 67777877777777777666655


Q ss_pred             HHhhccCCCchhhHHHHHHHHHHHHHHhcCcccc-ccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011277          370 AASSSYIPGSASLYLSVGGMLMFVLTFALGAGPV-PSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLE  444 (489)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~  444 (489)
                      ......   ..  +..-.....+++  +.|...+ .-...-++.+++..+..+|.=...+.+...++....+.+.|
T Consensus       294 ~a~~~~---~~--~~~~~~~~l~G~--g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D  362 (403)
T PF03209_consen  294 LAGPLG---SP--WLFRPGVFLLGL--GNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRD  362 (403)
T ss_pred             HHHhcc---cc--hHHHHHHHHHHH--hhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            443221   11  111122222222  2222111 11134567777888898888777777666666665555444

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.14  E-value=8e-10  Score=112.38  Aligned_cols=158  Identities=17%  Similarity=0.057  Sum_probs=103.8

Q ss_pred             ccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhc--chHH--HHHH
Q 011277           71 NEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATT--RNLI--GMLL  146 (489)
Q Consensus        71 ~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~--~~~~--~l~~  146 (489)
                      ....|.+.++.|.+.+..  .+......++..++.++.++++||+|||+++..+.++.+++.++.+..  .+..  ....
T Consensus       291 ~~~~p~i~~~~g~~~~~~--~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~  368 (479)
T PRK10077        291 LYYAPEIFKTLGASTDIA--LLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALL  368 (479)
T ss_pred             HHHHHHHHHHcCCCCchH--HHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHH
Confidence            344577878888765432  344555666778999999999999999999999999988887776543  1211  2222


Q ss_pred             HHHHHhhhccc-ccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhc------ccccCCchhHHHHHHHHHHHH
Q 011277          147 GRFVVGTGMGL-GPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGI------PVKEIAGWWRICFWVSIVPAA  219 (489)
Q Consensus       147 ~R~l~G~g~g~-~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~------~l~~~~~~wr~~f~~~~i~~~  219 (489)
                      +-++.+++.+. ..+....++.|.+|+++|+++.++......+|..+++.+..      .+.+..+ |++.|++.++..+
T Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~  447 (479)
T PRK10077        369 SMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFH-NGFSYWIYGCMGV  447 (479)
T ss_pred             HHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhcc-CccHHHHHHHHHH
Confidence            33444444433 23566788999999999999999998888777666543332      2223344 4666766544444


Q ss_pred             HHHH-HhhhccCC
Q 011277          220 ILCL-AMVFCAES  231 (489)
Q Consensus       220 ~~~~-~~~~~~Es  231 (489)
                      +..+ ..++.||+
T Consensus       448 ~~~~~~~~~~~e~  460 (479)
T PRK10077        448 LAALFMWKFVPET  460 (479)
T ss_pred             HHHHHHHhccccC
Confidence            3333 34456776

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.13  E-value=3.5e-10  Score=112.44  Aligned_cols=134  Identities=15%  Similarity=0.168  Sum_probs=112.1

Q ss_pred             HHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhcchHHHHHHHHHHHhhhccccccccccccccc
Q 011277           90 EGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEV  169 (489)
Q Consensus        90 ~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~  169 (489)
                      .+...+...++..++.+..|+++||+|||+.+..+.++..++.+.....++.+.+.+.+++.|++.+...+....++.|.
T Consensus       260 ~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  339 (408)
T PRK09874        260 SGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGILRFLLGAADGALLPAVQTLLVYN  339 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhHhhHHHHHHHHHHh
Confidence            34556666777788899999999999999999999888888777777778888888999999999998888888888899


Q ss_pred             CCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHHHHH
Q 011277          170 SPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLA  224 (489)
Q Consensus       170 ~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~i~~~~~~~~  224 (489)
                      .|+++||+..+++.....+|..+|+.+++.+.+..+ |++.|++..+..++..+.
T Consensus       340 ~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g-~~~~f~~~~~~~l~~~~~  393 (408)
T PRK09874        340 SSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYG-FRAVFLVTAGVVLFNAVY  393 (408)
T ss_pred             CCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcc-hhHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999888777666 688888765555444333

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=99.12  E-value=8.3e-12  Score=126.41  Aligned_cols=176  Identities=19%  Similarity=0.272  Sum_probs=3.0

Q ss_pred             HHHHHHHhhhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHH
Q 011277           54 LVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGAS  133 (489)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~  133 (489)
                      +..++..+......+.++..++++.+.|+++.+  +.|++.+.+-++..+..++..++.+|..|-+.+-.+.++++++++
T Consensus         6 ~~~~~~~~~q~~~~g~~~~~lttiErRF~l~S~--~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~   83 (539)
T PF03137_consen    6 VFLCLLGLFQMMVSGYVNSSLTTIERRFGLSSS--QSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSL   83 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH--HHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHH
Confidence            344555555566677888889999999998755  568999999999999999999999998888888888999999988


Q ss_pred             HHhhc----c----------------------------------------------hHHHHHHHHHHHhhhccccccccc
Q 011277          134 ISATT----R----------------------------------------------NLIGMLLGRFVVGTGMGLGPTVAA  163 (489)
Q Consensus       134 l~~~~----~----------------------------------------------~~~~l~~~R~l~G~g~g~~~~~~~  163 (489)
                      +.++=    .                                              -+..++++.++.|+|....+++..
T Consensus        84 l~~lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~  163 (539)
T PF03137_consen   84 LFALPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGI  163 (539)
T ss_dssp             --------------------------------------------------------------------SSS---------
T ss_pred             HHhccHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCcccee
Confidence            76530    0                                              023467899999999999999999


Q ss_pred             ccccccCCcccchhhhhHHHHHHHHHHHHHHHhhccccc------------------CCch---hHHHHHHHHHHHHHHH
Q 011277          164 LYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKE------------------IAGW---WRICFWVSIVPAAILC  222 (489)
Q Consensus       164 ~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~------------------~~~~---wr~~f~~~~i~~~~~~  222 (489)
                      +|+=|..+++.-+.+.+++.....+|+.+|.++|+....                  ...|   |..-|.+.+...++..
T Consensus       164 tYiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~a  243 (539)
T PF03137_consen  164 TYIDDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSA  243 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             eeeccccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999988888754321                  0112   5555555555555555


Q ss_pred             HHhhhccCC
Q 011277          223 LAMVFCAES  231 (489)
Q Consensus       223 ~~~~~~~Es  231 (489)
                      +..+++|+.
T Consensus       244 ipl~~FPk~  252 (539)
T PF03137_consen  244 IPLFFFPKK  252 (539)
T ss_dssp             ---------
T ss_pred             HHHHcCCcc
Confidence            555556654

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.10  E-value=2.7e-10  Score=112.36  Aligned_cols=143  Identities=20%  Similarity=0.179  Sum_probs=105.6

Q ss_pred             eccchhhhh-hhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHH--HHHhh--cchHHHH
Q 011277           70 VNEPLESIS-LDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGA--SISAT--TRNLIGM  144 (489)
Q Consensus        70 ~~~~~~~i~-~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~--~l~~~--~~~~~~l  144 (489)
                      ....+|.+. +++|.+.+  +.+...+...++..++.++.|+++||+|||+.+.....+..+..  .+...  .++.+.+
T Consensus       238 ~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (394)
T TIGR00883       238 ITTYLPTYLTQTLGLSAN--SALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLF  315 (394)
T ss_pred             HHHHHHHHHHHhcCCChh--HHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHH
Confidence            334456555 55666543  45677778888889999999999999999998876555444433  12222  2466667


Q ss_pred             HHHHHHHhhhcccccccccccccccCCcccchhhhhH-HHHHHHHHHHHHHHhhcccccCCchhHHHHHHH
Q 011277          145 LLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAF-IQIATCLGLMGSLLIGIPVKEIAGWWRICFWVS  214 (489)
Q Consensus       145 ~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~-~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~  214 (489)
                      .+..++.|++.+...+....++.|.+|+++|+++.++ ++.+..+|..++|.+++.+.+..+.|++.++..
T Consensus       316 ~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~  386 (394)
T TIGR00883       316 FFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYL  386 (394)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHH
Confidence            7788999998888888889999999999999999887 566677888788888877777666456666544

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=99.09  E-value=1.4e-08  Score=101.13  Aligned_cols=153  Identities=19%  Similarity=0.196  Sum_probs=102.3

Q ss_pred             hhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhc-----hhhHHHHHhHHHHHHHHHHHhhc----chHHHH
Q 011277           74 LESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGV-----GRRRAFQLCALPMIIGASISATT----RNLIGM  144 (489)
Q Consensus        74 ~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~-----GRr~~~~~~~~~~~i~~~l~~~~----~~~~~l  144 (489)
                      .+-+.+++|.+.++.+  ...+...+.. ..-++.|.++|.+     -||+-++++.++..++....+..    .+....
T Consensus        13 ~~~l~~~l~ls~~~~~--~~~~~~~lPw-~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~   89 (433)
T PF03092_consen   13 YPFLKDDLGLSPAQLQ--RLSSLASLPW-SIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIA   89 (433)
T ss_pred             HHHHHHHcCCCHHHHH--HHHHHHhCch-HHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhH
Confidence            4557788998866543  3444444444 3568899999975     35565666666665544444432    345666


Q ss_pred             HHHHHHHhhhcccccccccccccccCC--cccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHHH
Q 011277          145 LLGRFVVGTGMGLGPTVAALYVTEVSP--PFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILC  222 (489)
Q Consensus       145 ~~~R~l~G~g~g~~~~~~~~~i~e~~~--~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~i~~~~~~  222 (489)
                      .+.=++..+|....-..+-+.+.|...  ++.||...+.......+|.+++..+++.+.+..+ +|+.|.+..+...+..
T Consensus        90 ~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~-~~~~f~i~~~~~~l~~  168 (433)
T PF03092_consen   90 VVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFG-PQGVFLISAALPLLML  168 (433)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCC-CeEEehHHHHHHHHHH
Confidence            666678888888888888899999983  3447788888888888898888888887776666 4777776544433333


Q ss_pred             -HHhhhccC
Q 011277          223 -LAMVFCAE  230 (489)
Q Consensus       223 -~~~~~~~E  230 (489)
                       ...+..+|
T Consensus       169 ~~~~~~~~e  177 (433)
T PF03092_consen  169 IVALFLLEE  177 (433)
T ss_pred             HHHHHhhhh
Confidence             33344444

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.08  E-value=8.1e-09  Score=102.01  Aligned_cols=154  Identities=15%  Similarity=0.166  Sum_probs=107.2

Q ss_pred             HHHHHhcCCCc---chHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHH
Q 011277          313 SSVFKSAGLSS---GLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGM  389 (489)
Q Consensus       313 ~~~~~~~~~~~---~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (489)
                      +.+.++.+.+.   ++......++..++.++.|++.||+|||+++..+....+++..+.....     + ... +. ..-
T Consensus        44 ~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~-----~-~~~-l~-~~r  115 (394)
T PRK10213         44 TPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFAN-----S-FSL-LL-IGR  115 (394)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHC-----h-HHH-HH-HHH
Confidence            44445555543   4445566778888999999999999999999888877777655543221     1 111 11 111


Q ss_pred             HHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHhh
Q 011277          390 LMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRN  469 (489)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  469 (489)
                      .+.+++.+. ..|....++.|.+|++.|+++.++......++..++|.+...+.+..+|.+.|.+.++++++..++....
T Consensus       116 ~l~G~~~g~-~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l~~~~~  194 (394)
T PRK10213        116 ACLGLALGG-FWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIFWIIKS  194 (394)
T ss_pred             HHHHHhhHH-HHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence            222222221 2345566788999999999999999999999999999988888888899888888877776666666566


Q ss_pred             cccCCC
Q 011277          470 VVETKG  475 (489)
Q Consensus       470 ~~et~~  475 (489)
                      +||+++
T Consensus       195 ~p~~~~  200 (394)
T PRK10213        195 LPSLPG  200 (394)
T ss_pred             CCCCCc
Confidence            788654

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.08  E-value=1.2e-09  Score=107.14  Aligned_cols=147  Identities=18%  Similarity=0.284  Sum_probs=110.8

Q ss_pred             hhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhcchHHHHHHHHHHHhhhccc
Q 011277           78 SLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGL  157 (489)
Q Consensus        78 ~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l~~~R~l~G~g~g~  157 (489)
                      .+++|.+.+  +.++..+.......++.++.|+++||+|||+++..+.++..++..+....++.+.+.+.+++.|++.|.
T Consensus       227 ~~~~g~~~~--~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~  304 (375)
T TIGR00899       227 IHELGLPDK--LAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGI  304 (375)
T ss_pred             HHHcCCCHH--HHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456676543  446666665556667889999999999999999887776666555555667888888899999999888


Q ss_pred             ccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHHHHHhhhc
Q 011277          158 GPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFC  228 (489)
Q Consensus       158 ~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~i~~~~~~~~~~~~  228 (489)
                      ..+....++.|..|+ +|+++.+++.....+|..+++.+++.+.+..+ |+..|++..+..++..+...++
T Consensus       305 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~  373 (375)
T TIGR00899       305 LAGIGMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILAERWS-YHAVYWFAIVMLIVALFCLLLI  373 (375)
T ss_pred             HHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHhee
Confidence            777777888998876 46799999998888999888888877766666 5888887655555544444433

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.06  E-value=1.5e-09  Score=106.98  Aligned_cols=160  Identities=19%  Similarity=0.187  Sum_probs=103.6

Q ss_pred             HHHhhhhccceeeccchhhhh-hhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhH--HHH------HhHHHH
Q 011277           58 LSSFLFGYHLGVVNEPLESIS-LDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRR--AFQ------LCALPM  128 (489)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~--~~~------~~~~~~  128 (489)
                      +..++........+...|.+. +++|.+  +.+.++..+...++..++.++.|+++||+|||+  ...      .+.++.
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (399)
T TIGR00893       222 LGQFLVNIGLGFFLTWFPTYLVQERGLS--ILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVL  299 (399)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHhccc--HHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHH
Confidence            333333333333444555554 445654  344577888888888999999999999999996  111      111111


Q ss_pred             HHHHHHHhhcchHHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhH
Q 011277          129 IIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWR  208 (489)
Q Consensus       129 ~i~~~l~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr  208 (489)
                      .+........++.......-.+.+.+.+ ..+....++.|..|+++||+..++++....+|..+++.+.+.+.+..+.|+
T Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~  378 (399)
T TIGR00893       300 SLLMFATNYVNIPYAALALVALGFFGLG-AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFA  378 (399)
T ss_pred             HHHHHHhccchhHHHHHHHHHHHHhchh-hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchh
Confidence            1111112222344444444455555444 677888899999999999999999999999999999988888777666357


Q ss_pred             HHHHHHHHHHHH
Q 011277          209 ICFWVSIVPAAI  220 (489)
Q Consensus       209 ~~f~~~~i~~~~  220 (489)
                      ..|++..+..++
T Consensus       379 ~~~~~~~~~~~~  390 (399)
T TIGR00893       379 GALMVVAALALI  390 (399)
T ss_pred             HHHHHHHHHHHH
Confidence            777765444443

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.06  E-value=1.4e-09  Score=110.08  Aligned_cols=148  Identities=18%  Similarity=0.167  Sum_probs=99.8

Q ss_pred             eccchhhhh-hhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHH--HhhcchHHHHHH
Q 011277           70 VNEPLESIS-LDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASI--SATTRNLIGMLL  146 (489)
Q Consensus        70 ~~~~~~~i~-~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l--~~~~~~~~~l~~  146 (489)
                      ....+|.+. +++|++..  +.++..+...++..+|.++.|+++||+|||+.+.....+..++..+  .....+...+.+
T Consensus       277 ~~~~~p~yl~~~~g~s~~--~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (467)
T PRK09556        277 IDNWSPVYAFQELGFSKE--DAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQHATSEYMYLA  354 (467)
T ss_pred             HHHHHHHHHHHccCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence            344566554 56777644  4567788888899999999999999999998876654444433222  223456666778


Q ss_pred             HHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHH-HHHHHHHhhccccc------------CCchhHHHHHH
Q 011277          147 GRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCL-GLMGSLLIGIPVKE------------IAGWWRICFWV  213 (489)
Q Consensus       147 ~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~-G~~~g~~~~~~l~~------------~~~~wr~~f~~  213 (489)
                      .+++.|++..+..........|.+|+++||.+.++.+....+ |...++.+.+.+.+            ..+ |+..|++
T Consensus       355 ~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~-~~~~f~~  433 (467)
T PRK09556        355 SLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTG-WAGTFAA  433 (467)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccC-hHHHHHH
Confidence            888888654433333335667999999999999999877665 65555555444444            345 6888876


Q ss_pred             HHHHHHH
Q 011277          214 SIVPAAI  220 (489)
Q Consensus       214 ~~i~~~~  220 (489)
                      ..+..++
T Consensus       434 ~~~~~~~  440 (467)
T PRK09556        434 LDIAAIG  440 (467)
T ss_pred             HHHHHHH
Confidence            5443333

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.06  E-value=1.2e-09  Score=111.53  Aligned_cols=140  Identities=16%  Similarity=0.061  Sum_probs=104.4

Q ss_pred             ccchhhhh-hhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhc--chHHHHHHH
Q 011277           71 NEPLESIS-LDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATT--RNLIGMLLG  147 (489)
Q Consensus        71 ~~~~~~i~-~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~--~~~~~l~~~  147 (489)
                      ...+|.+. +++|.+.  .+.++..+...++..+|.++.|+++||+|||+++..+.++..++.++....  .+.+.+.+.
T Consensus       295 ~~~lp~~l~~~~g~~~--~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  372 (496)
T PRK03893        295 QALLPTYLKTDLGYDP--HTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLL  372 (496)
T ss_pred             HHHHHHHHHhhcCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence            34566666 4777754  356788899999999999999999999999999988877666655444332  334444455


Q ss_pred             HHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHH
Q 011277          148 RFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWV  213 (489)
Q Consensus       148 R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~  213 (489)
                      .++.+....+..+..+.++.|.+|+++||+..+++.....+|..+|+++++.+.+..+ |+..++.
T Consensus       373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g-~~~~~~~  437 (496)
T PRK03893        373 LFFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLD-LGTALAS  437 (496)
T ss_pred             HHHHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCC-hHHHHHH
Confidence            5555544434455667788999999999999999988889999999999888877777 4666544

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.05  E-value=1.7e-08  Score=101.18  Aligned_cols=155  Identities=16%  Similarity=0.142  Sum_probs=106.2

Q ss_pred             HhHHHHHHhcCCCc---chHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHH
Q 011277          310 YFSSSVFKSAGLSS---GLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSV  386 (489)
Q Consensus       310 ~~~~~~~~~~~~~~---~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  386 (489)
                      .+.+.+.++.+.+.   ++......++..++.++.|++.||+|||+.+.++.+..+++..+.....+        .+...
T Consensus        44 ~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~--------~~~l~  115 (434)
T PRK11663         44 AAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFSSS--------LWAFA  115 (434)
T ss_pred             HhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHHhH--------HHHHH
Confidence            34455566666653   45566677888899999999999999999988887777766654433211        11111


Q ss_pred             HHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHH
Q 011277          387 GGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFV  466 (489)
Q Consensus       387 ~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~  466 (489)
                      ...++..+..+.+ .+....+..|.+|++.|++++++.+....+++.+++.+...+.+..||.+.|.+.++++++..++.
T Consensus       116 ~~~~l~g~~~g~~-~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~~~~~  194 (434)
T PRK11663        116 LLWVLNAFFQGWG-WPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVVGLFL  194 (434)
T ss_pred             HHHHHHHHHHHcc-chHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHH
Confidence            1111222222222 244556789999999999999999999999999999888888888898888888777665554444


Q ss_pred             HhhcccC
Q 011277          467 KRNVVET  473 (489)
Q Consensus       467 ~~~~~et  473 (489)
                      ...+||+
T Consensus       195 ~~~~~~~  201 (434)
T PRK11663        195 CWRLRDK  201 (434)
T ss_pred             HHHcCCC
Confidence            4445543

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.05  E-value=2.5e-09  Score=105.26  Aligned_cols=133  Identities=12%  Similarity=0.019  Sum_probs=115.6

Q ss_pred             eccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhcchHHHHHHHHH
Q 011277           70 VNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRF  149 (489)
Q Consensus        70 ~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l~~~R~  149 (489)
                      +....|.+.+|+|.+.+  +.|+..+...++..++.++.+++.||+|+|+.+.++.++..+...+.+++++.+.+++.++
T Consensus       224 ~~~~~~~~l~~~g~s~~--~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~  301 (382)
T TIGR00902       224 YYGFSAIYWQAAGISAS--ATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQI  301 (382)
T ss_pred             HHHHHHHHHHHCCCCHh--HHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHH
Confidence            44455666678777643  4577777888888899999999999999999999999999999999999999999999999


Q ss_pred             HHhhhcccccccccccccccCCcccchhhhhHHH-HHHHHHHHHHHHhhcccccCCc
Q 011277          150 VVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQ-IATCLGLMGSLLIGIPVKEIAG  205 (489)
Q Consensus       150 l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~-~~~~~G~~~g~~~~~~l~~~~~  205 (489)
                      ++|+..|...+....++.+. |+++|++..++++ ....+|..+++++++.+.+..+
T Consensus       302 l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g  357 (382)
T TIGR00902       302 LHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLG  357 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            99999999999999999998 9999999999986 5778899999999998888776

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>TIGR00898 2A0119 cation transport protein

Probab=99.05  E-value=9.4e-10  Score=112.65  Aligned_cols=133  Identities=14%  Similarity=0.016  Sum_probs=101.6

Q ss_pred             HHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhcchH--HHHHHHHHHHhhhcccccccccccccccCCcc
Q 011277           96 MCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNL--IGMLLGRFVVGTGMGLGPTVAALYVTEVSPPF  173 (489)
Q Consensus        96 ~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~--~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~  173 (489)
                      ...+....+.++.++++||+|||+.+..+.++.+++.++....++.  ....+.-++.+++.+...+....+..|.+|++
T Consensus       363 ~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~  442 (505)
T TIGR00898       363 ISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYPTV  442 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccHH
Confidence            3445566788999999999999999999998888888777766544  44555566777777777778888999999999


Q ss_pred             cchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHHHHHhhhccCC
Q 011277          174 VRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAES  231 (489)
Q Consensus       174 ~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~i~~~~~~~~~~~~~Es  231 (489)
                      .|+.+.++.+....+|.+++|.+.. +.+ .+ +...+++.+...++..+...++||+
T Consensus       443 ~r~~~~g~~~~~~~ig~~i~p~i~~-~~~-~~-~~~~~~~~~~~~~~~~~~~~~lpet  497 (505)
T TIGR00898       443 VRNLGVGVCSTMARVGSIISPFLVY-LGE-KW-LFLPLVLFGGLALLAGILTLFLPET  497 (505)
T ss_pred             HHhhhHhHHHHHHHHHHHHHhHHHH-HHH-HH-HhhHHHHHHHHHHHHHHHHHcCcCC
Confidence            9999999999999999888888766 332 22 4556665555555555556678887

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.05  E-value=8.5e-09  Score=101.54  Aligned_cols=155  Identities=14%  Similarity=0.115  Sum_probs=107.1

Q ss_pred             HHHHHhcCCC---cchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHH
Q 011277          313 SSVFKSAGLS---SGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGM  389 (489)
Q Consensus       313 ~~~~~~~~~~---~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (489)
                      +...++.+.+   .++......++..++.++.|++.||+|||+.+..+.....++.........        .+......
T Consensus        29 p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~  100 (385)
T TIGR00710        29 PEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNN--------IETLLVLR  100 (385)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHcc--------HHHHHHHH
Confidence            4444555554   355666777888999999999999999999988877766666555433211        11111111


Q ss_pred             HHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHhh
Q 011277          390 LMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRN  469 (489)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  469 (489)
                      ++.+.+.+. ..+....+..|.+|++.|++..++......++..+++.+...+.+..++...+.+.+.++++..+.....
T Consensus       101 ~l~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (385)
T TIGR00710       101 FVQAFGASA-GSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFFI  179 (385)
T ss_pred             HHHHcchhH-HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHh
Confidence            122221111 1234456789999999999999999999999999999888877777888888888777777666666666


Q ss_pred             cccCCCC
Q 011277          470 VVETKGK  476 (489)
Q Consensus       470 ~~et~~~  476 (489)
                      .||++.+
T Consensus       180 ~~~~~~~  186 (385)
T TIGR00710       180 LPETLPY  186 (385)
T ss_pred             CCCCCCC
Confidence            7777554

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.04  E-value=8e-09  Score=102.72  Aligned_cols=153  Identities=15%  Similarity=0.116  Sum_probs=103.5

Q ss_pred             HHHHhcCCCcc---hHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHH
Q 011277          314 SVFKSAGLSSG---LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGML  390 (489)
Q Consensus       314 ~~~~~~~~~~~---~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  390 (489)
                      .+-++.+.+.+   .......++..++.++.|+++||+|||+++..+.....++..+.....     + ... +. ..-+
T Consensus        41 ~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~-----~-~~~-l~-~~r~  112 (413)
T PRK15403         41 NVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFTT-----S-MTQ-FL-IARF  112 (413)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHcC-----C-HHH-HH-HHHH
Confidence            33444454433   344556678888999999999999999998888766666554443221     1 111 11 1112


Q ss_pred             HHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHhhc
Q 011277          391 MFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNV  470 (489)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  470 (489)
                      +.+++.+. ..+....+..|.+|++.|++.+++......++..++|.+...+.+..||.+.|.+.+++.++..++....+
T Consensus       113 l~Gi~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~l  191 (413)
T PRK15403        113 IQGTSICF-IATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVGLLLAM  191 (413)
T ss_pred             HHHHHHHH-HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhC
Confidence            22222111 12344567889999999999999999999999988888777777778898999888887777766655678


Q ss_pred             ccCCC
Q 011277          471 VETKG  475 (489)
Q Consensus       471 ~et~~  475 (489)
                      ||++.
T Consensus       192 p~~~~  196 (413)
T PRK15403        192 PETVK  196 (413)
T ss_pred             CCCcc
Confidence            88754

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.04  E-value=1.6e-09  Score=106.67  Aligned_cols=144  Identities=13%  Similarity=0.104  Sum_probs=110.5

Q ss_pred             cchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhcchHHHHHHHHHHH
Q 011277           72 EPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVV  151 (489)
Q Consensus        72 ~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l~~~R~l~  151 (489)
                      ..+|.+.++.|.+.+  +.++..+...++..+++++.|+++||+|||+++..+..+..++.....  . ........++.
T Consensus       221 ~~lp~~~~~~g~s~~--~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~-~~~~~~~~~l~  295 (381)
T PRK03633        221 GLMPLYLNHQGMSDA--SIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML--S-QAAMAPALFIL  295 (381)
T ss_pred             HHHHHHHHHcCCCHH--HHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--h-hHHHHHHHHHH
Confidence            346777777776543  456778888889999999999999999999999888877777655443  2 23344577888


Q ss_pred             hhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHH
Q 011277          152 GTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAIL  221 (489)
Q Consensus       152 G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~i~~~~~  221 (489)
                      |++.+...+.....+.|..|+++++...+.+.....+|..+||.+++.+.++.+ |++.|.+.+...++.
T Consensus       296 g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g-~~~~f~~~~~~~l~~  364 (381)
T PRK03633        296 GAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYS-DNLLFIMIASVSFIY  364 (381)
T ss_pred             HHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHH
Confidence            887777778888888999999888888888888889999999998888877777 577877654444433

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.04  E-value=1.5e-08  Score=100.79  Aligned_cols=155  Identities=19%  Similarity=0.144  Sum_probs=105.7

Q ss_pred             HHHHHHhcCCC---cchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHH
Q 011277          312 SSSVFKSAGLS---SGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGG  388 (489)
Q Consensus       312 ~~~~~~~~~~~---~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  388 (489)
                      .+.+.++.+.+   .++......++..++.+..|++.||+|||+++..+.+...++..+.....+      .. .+.+ .
T Consensus        31 ~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~------~~-~l~~-~  102 (412)
T TIGR02332        31 GLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIASTATMFATG------PE-SLYL-L  102 (412)
T ss_pred             HHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcC------HH-HHHH-H
Confidence            34444555544   345666677888899999999999999999988887777766655443211      11 1111 1


Q ss_pred             HHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH------HhCCchhhHHHHHHHHHH
Q 011277          389 MLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLE------QLGPQLLYSIFGTFCLMA  462 (489)
Q Consensus       389 ~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~------~~g~~~~~~~~~~~~~~~  462 (489)
                      -++.+++.+ +..|....+..|.+|+++|+++.++.+....++..+++.+...+.+      ..||++.|.+.++..++.
T Consensus       103 r~l~G~~~~-~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~  181 (412)
T TIGR02332       103 RILVGIAEA-GFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVIL  181 (412)
T ss_pred             HHHHHHHHh-hHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHH
Confidence            122222222 1235555678999999999999999999888888888887666553      258888998888777766


Q ss_pred             HHHHHhhcccCCC
Q 011277          463 VAFVKRNVVETKG  475 (489)
Q Consensus       463 ~~~~~~~~~et~~  475 (489)
                      .+..+..+||++.
T Consensus       182 ~~~~~~~~~~~p~  194 (412)
T TIGR02332       182 GVMTWFWLDDSPD  194 (412)
T ss_pred             HHHHhhccCCCcc
Confidence            6666667888763

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.03  E-value=3.1e-09  Score=105.06  Aligned_cols=158  Identities=17%  Similarity=0.175  Sum_probs=112.7

Q ss_pred             eccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhcc-hHHHHHHHH
Q 011277           70 VNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTR-NLIGMLLGR  148 (489)
Q Consensus        70 ~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~-~~~~l~~~R  148 (489)
                      ....+|.+.+++|.+.+  +.+...+.+.++..+|.++.|++.||+|||+.+..+..+..++..+....+ +...+.  -
T Consensus       224 ~~~~lp~~l~~~g~s~~--~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~  299 (393)
T PRK09705        224 LIAWLPAFYIEIGASAQ--YSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPVLW--A  299 (393)
T ss_pred             HHHHHHHHHHHcCCChh--hhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHHHHH--H
Confidence            33456667777776643  457888899999999999999999999999999888777767665544323 222222  2


Q ss_pred             HHHhhhcccccccccccccccCC-cccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHH-HHHhh
Q 011277          149 FVVGTGMGLGPTVAALYVTEVSP-PFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAIL-CLAMV  226 (489)
Q Consensus       149 ~l~G~g~g~~~~~~~~~i~e~~~-~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~i~~~~~-~~~~~  226 (489)
                      ++.|++.+...+.......|..+ +++||+..++.+....++..++|.+.+.+.+..|.|+..|++..+..++. .....
T Consensus       300 ~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  379 (393)
T PRK09705        300 MVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLR  379 (393)
T ss_pred             HHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHH
Confidence            46688887777766666667775 67899999998888888888888888877776665677777654433333 33345


Q ss_pred             hccCC
Q 011277          227 FCAES  231 (489)
Q Consensus       227 ~~~Es  231 (489)
                      +.||+
T Consensus       380 ~~~~~  384 (393)
T PRK09705        380 FAPAR  384 (393)
T ss_pred             hcccc
Confidence            66776

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.03  E-value=3.9e-09  Score=107.01  Aligned_cols=161  Identities=15%  Similarity=0.016  Sum_probs=112.0

Q ss_pred             eeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhh-----cc---
Q 011277           68 GVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISAT-----TR---  139 (489)
Q Consensus        68 ~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~-----~~---  139 (489)
                      .......|.+.+++|.+.+  +.++......++..++.++.|+++||+|||+.+..+.++..++.++.+.     ..   
T Consensus       301 ~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  378 (481)
T TIGR00879       301 NAIMYYSPTIFENAGVSTD--HAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSS  378 (481)
T ss_pred             eehHHHHHHHHHHcCCCch--HHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcc
Confidence            3344456777788887653  3467777788888899999999999999999999888877777666652     11   


Q ss_pred             ---hHHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHH
Q 011277          140 ---NLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIV  216 (489)
Q Consensus       140 ---~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~i  216 (489)
                         +...+....++.+.......+....++.|.+|+++|++..++......+|..+++.+...+.+..+ |++.|++.+.
T Consensus       379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~-~~~~f~~~~~  457 (481)
T TIGR00879       379 KSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIG-VGGVFIFFGG  457 (481)
T ss_pred             cchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-ccceehhHHH
Confidence               233333333333333333445666778999999999999999999999998888887666655555 5777776544


Q ss_pred             HHHHHHHH-hhhccCC
Q 011277          217 PAAILCLA-MVFCAES  231 (489)
Q Consensus       217 ~~~~~~~~-~~~~~Es  231 (489)
                      ..++..+. .++.||+
T Consensus       458 ~~~~~~i~~~~~~~~~  473 (481)
T TIGR00879       458 LNVLGLIFVYFFLPET  473 (481)
T ss_pred             HHHHHHHHHheecccC
Confidence            44443333 3455665

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.02  E-value=2.4e-08  Score=101.13  Aligned_cols=150  Identities=11%  Similarity=0.066  Sum_probs=93.9

Q ss_pred             hHHHHHHhcCCCc---chHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHH
Q 011277          311 FSSSVFKSAGLSS---GLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVG  387 (489)
Q Consensus       311 ~~~~~~~~~~~~~---~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  387 (489)
                      +.+.+.++.+.+.   +.......++..++.++.|+++||+|||+++..+.+...++.++.....     + ....  ..
T Consensus        58 ~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~-----s-~~~l--~~  129 (476)
T PLN00028         58 LLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVS-----S-ATGF--IA  129 (476)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhc-----C-HHHH--HH
Confidence            3445556666643   3445566678888999999999999999988777666665544433221     1 1111  11


Q ss_pred             HHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH---------HhCCchhhHHHHHH
Q 011277          388 GMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLE---------QLGPQLLYSIFGTF  458 (489)
Q Consensus       388 ~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~---------~~g~~~~~~~~~~~  458 (489)
                      ..++.+++.+ +..+ ...+.+|.+|++.|+++.|+.+...++++.+++.+.+.+..         ..||++.|.+.+++
T Consensus       130 ~r~l~G~~~~-~~~~-~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l  207 (476)
T PLN00028        130 VRFFIGFSLA-TFVS-CQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLL  207 (476)
T ss_pred             HHHHHHHHHH-hhHH-HHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHH
Confidence            1112222221 1122 23467899999999999999988888887777665543322         13688888888887


Q ss_pred             HHHHHHHHHhhc
Q 011277          459 CLMAVAFVKRNV  470 (489)
Q Consensus       459 ~~~~~~~~~~~~  470 (489)
                      +++..+...+..
T Consensus       208 ~l~~~l~~~~~~  219 (476)
T PLN00028        208 HIIMGILVLTLG  219 (476)
T ss_pred             HHHHHHHHHHHc
Confidence            766655544443

>PRK03699 putative transporter; Provisional

Probab=99.02  E-value=2e-09  Score=106.41  Aligned_cols=149  Identities=13%  Similarity=0.069  Sum_probs=112.8

Q ss_pred             ccchhhhh-hhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhcchHHHHHHHHH
Q 011277           71 NEPLESIS-LDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRF  149 (489)
Q Consensus        71 ~~~~~~i~-~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l~~~R~  149 (489)
                      ...+|.+. +++|++.+  +.++..+.+.++..+|.++.|+++||+|||+.+.....+..+...+....++...+.+.-+
T Consensus       225 ~~~~p~~l~~~~g~s~~--~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (394)
T PRK03699        225 ISWVPEYAQKKFGMSLE--DAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNTDDPSHLLYAIL  302 (394)
T ss_pred             HHHHHHHHHHHcCCChH--HhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHcCCchHHHHHHH
Confidence            34566666 45677643  4578888888999999999999999999999998877777776666666777777777888


Q ss_pred             HHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHHHH
Q 011277          150 VVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCL  223 (489)
Q Consensus       150 l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~i~~~~~~~  223 (489)
                      +.|++.+..++....+..|..|. ++++..+.......+|..++|.+.+.+.+..+ |+..++...+..++...
T Consensus       303 ~~G~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g-~~~~~~~~~~~~~~~~~  374 (394)
T PRK03699        303 GLGFFSSAIYTTIITLGSQQTKV-ASPKLVNFILTCGTIGTMLTFVVTSPIVAHFG-LQAALLTANGLYAVVFV  374 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHccC-CCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhC-chhhhhhhHHHHHHHHH
Confidence            99998887777777777787764 46777788878888899889888887777667 57777765444444333

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.02  E-value=1.2e-08  Score=100.85  Aligned_cols=158  Identities=15%  Similarity=0.090  Sum_probs=105.5

Q ss_pred             HhHHHHHHhcCCCc---chHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHH
Q 011277          310 YFSSSVFKSAGLSS---GLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSV  386 (489)
Q Consensus       310 ~~~~~~~~~~~~~~---~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  386 (489)
                      ...+.+.++.+.+.   ++......++..++.++.|+++||+|||+.+..+.....++..+.....     + ... .. 
T Consensus        24 ~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~-----~-~~~-~~-   95 (392)
T PRK10473         24 VGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAE-----T-SSL-FL-   95 (392)
T ss_pred             hhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhC-----c-HHH-HH-
Confidence            34555556656553   3455566678888899999999999999998888776666655543221     1 111 11 


Q ss_pred             HHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHH
Q 011277          387 GGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFV  466 (489)
Q Consensus       387 ~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~  466 (489)
                      ....+.+.+.+ ...+....+..|.+|++.|++..+..+....++..++|.+...+.+..++...+.+.+.++++..++.
T Consensus        96 ~~~~l~g~~~~-~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~  174 (392)
T PRK10473         96 AGRFLQGIGAG-CCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLS  174 (392)
T ss_pred             HHHHHHHhhhh-HHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHH
Confidence            11111122111 11234556789999999999999999999888888888776666667788888888887777766666


Q ss_pred             HhhcccCCCC
Q 011277          467 KRNVVETKGK  476 (489)
Q Consensus       467 ~~~~~et~~~  476 (489)
                      ...+||++.+
T Consensus       175 ~~~~~~~~~~  184 (392)
T PRK10473        175 LFILKETRPA  184 (392)
T ss_pred             HHHcCCCCCc
Confidence            6667776543

>TIGR00895 2A0115 benzoate transport

Probab=99.01  E-value=9.7e-09  Score=101.48  Aligned_cols=156  Identities=21%  Similarity=0.233  Sum_probs=107.1

Q ss_pred             HhHHHHHHhcCCCc---chHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHH
Q 011277          310 YFSSSVFKSAGLSS---GLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSV  386 (489)
Q Consensus       310 ~~~~~~~~~~~~~~---~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  386 (489)
                      ++.+.+.+..+.+.   ++......++..++.++.|+++||+|||+.+..+.....++..+.....     .   .+...
T Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~-----~---~~~~~  109 (398)
T TIGR00895        38 FAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCALAT-----N---VTQLL  109 (398)
T ss_pred             hhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHcc-----c---hHHHH
Confidence            44555555555543   4555666788889999999999999999998887776666554433221     1   11111


Q ss_pred             HHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHH
Q 011277          387 GGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFV  466 (489)
Q Consensus       387 ~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~  466 (489)
                      ...++.+++.+ ...+....+..|.+|++.|+++.++......++..+++.+.+.+.+..++...+.+.+.++++..+..
T Consensus       110 ~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~  188 (398)
T TIGR00895       110 ILRFLAGLGLG-GLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLL  188 (398)
T ss_pred             HHHHHHhcccc-cchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHHHHH
Confidence            11222222221 22355667889999999999999999999999999999888888788888888877766666665555


Q ss_pred             HhhcccCC
Q 011277          467 KRNVVETK  474 (489)
Q Consensus       467 ~~~~~et~  474 (489)
                      ...+||+.
T Consensus       189 ~~~~~~~~  196 (398)
T TIGR00895       189 MRFLPESI  196 (398)
T ss_pred             HHhCCCCC
Confidence            56677764

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.01  E-value=2.4e-09  Score=106.79  Aligned_cols=158  Identities=13%  Similarity=0.068  Sum_probs=122.6

Q ss_pred             ccchhhhhhh-cCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhcchHHHHHHHHH
Q 011277           71 NEPLESISLD-LGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRF  149 (489)
Q Consensus        71 ~~~~~~i~~~-~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l~~~R~  149 (489)
                      +...|.+.++ +|.+..  ..++..+.+.+|..++.++.+++.||.++|+.+..+.++..++.++.+..++...+.++.+
T Consensus       243 ~~~~p~~~~~~~g~~~~--~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (417)
T PRK10489        243 RVLYPALADEVWQMGAA--QIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCLA  320 (417)
T ss_pred             HHhhHHHHHhccCCChh--HhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHHHHH
Confidence            3345666666 777543  4578888889999999999999999988888888888888888777888888887888899


Q ss_pred             HHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHH-HHHHHHhhhc
Q 011277          150 VVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPA-AILCLAMVFC  228 (489)
Q Consensus       150 l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~i~~-~~~~~~~~~~  228 (489)
                      +.|++.+...+....++.|..|++.||+..+++.....+|..+|+.+.+.+.+..+. +..++..+... ++..+.....
T Consensus       321 ~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~-~~~~~~~~~~~~~~~~~~~~~~  399 (417)
T PRK10489        321 LFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTP-VASASASGFGLLIIGVLLLLVL  399 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhch-hhHHHHHHHHHHHHHHHHHHhc
Confidence            999988877777778899999999999999999999999999999988887776663 55555443333 3333344445


Q ss_pred             cCC
Q 011277          229 AES  231 (489)
Q Consensus       229 ~Es  231 (489)
                      +|.
T Consensus       400 ~~~  402 (417)
T PRK10489        400 GEL  402 (417)
T ss_pred             ccc
Confidence            554

>PRK03545 putative arabinose transporter; Provisional

Probab=98.99  E-value=2.8e-08  Score=98.23  Aligned_cols=154  Identities=16%  Similarity=0.109  Sum_probs=104.8

Q ss_pred             HHHHHHhcCCCc---chHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHH
Q 011277          312 SSSVFKSAGLSS---GLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGG  388 (489)
Q Consensus       312 ~~~~~~~~~~~~---~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  388 (489)
                      .+.+.++.+.+.   ++......++..++.+..|++.||+|||+++..+.....++........+      ... +.+ .
T Consensus        32 ~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~------~~~-l~~-~  103 (390)
T PRK03545         32 LSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALAWN------FTV-LLI-S  103 (390)
T ss_pred             hHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhcc------HHH-HHH-H
Confidence            345555556554   34445566777788888999999999999998887777766555433211      111 111 1


Q ss_pred             HHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHh
Q 011277          389 MLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKR  468 (489)
Q Consensus       389 ~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~  468 (489)
                      .++.+.+.+ ...|....+..|.+|+++|++++|+......++..++|.+...+.+..||++.|.+.++++++..++...
T Consensus       104 r~~~G~~~~-~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~  182 (390)
T PRK03545        104 RIGIAFAHA-IFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLIK  182 (390)
T ss_pred             HHHHHHHHH-HHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH
Confidence            111111111 1224445678899999999999999999999999998888777777789999998888877777666555


Q ss_pred             hcccCC
Q 011277          469 NVVETK  474 (489)
Q Consensus       469 ~~~et~  474 (489)
                      .+||.+
T Consensus       183 ~~~~~~  188 (390)
T PRK03545        183 LLPLLP  188 (390)
T ss_pred             hCCCCC
Confidence            666643

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=98.99  E-value=1.7e-08  Score=98.49  Aligned_cols=152  Identities=15%  Similarity=0.039  Sum_probs=99.2

Q ss_pred             HHHHHhcCCC---cchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHH
Q 011277          313 SSVFKSAGLS---SGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGM  389 (489)
Q Consensus       313 ~~~~~~~~~~---~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (489)
                      +.+.++.+.+   .++......++..++.+..|+++||+|||+++.........+. ......     ... ..+. ..-
T Consensus        15 p~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~-~~~~~~-----~~~-~~l~-~~R   86 (368)
T TIGR00903        15 SLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAA-GRLLDP-----FNY-EWLL-ACQ   86 (368)
T ss_pred             HHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHH-HHHHHh-----ccH-HHHH-HHH
Confidence            3444444443   3455566778888999999999999999987654433222221 111110     111 1111 111


Q ss_pred             HHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHhh
Q 011277          390 LMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRN  469 (489)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  469 (489)
                      ++.+++  .+..+......+|.+|+++|++++++......++..+++.+...+.+..||+..|.+.+++.++..++.++.
T Consensus        87 ~l~G~g--~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~~  164 (368)
T TIGR00903        87 LLAALG--QPFLLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIILVLAA  164 (368)
T ss_pred             HHHHhH--hHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHH
Confidence            122222  222222333458999999999999999999999999999888888888899999988888887777777778


Q ss_pred             cccCC
Q 011277          470 VVETK  474 (489)
Q Consensus       470 ~~et~  474 (489)
                      +||.+
T Consensus       165 lp~~p  169 (368)
T TIGR00903       165 LPALP  169 (368)
T ss_pred             cCCCC
Confidence            88864

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.98  E-value=8.5e-09  Score=104.98  Aligned_cols=281  Identities=18%  Similarity=0.258  Sum_probs=185.4

Q ss_pred             HHHHHHHHhhhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHH
Q 011277           53 VLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGA  132 (489)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~  132 (489)
                      +++.++..+..+...+.++..+.++.+.|+++.++  .|++.+.+=+|..+...+..+..-|.-|-+.+-++.+++++++
T Consensus        99 l~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~--sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgs  176 (735)
T KOG3626|consen   99 LVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQ--SGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGS  176 (735)
T ss_pred             HHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCc--ceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHH
Confidence            45556667777877888888999999999997654  6899999999999999999999999999999999999999999


Q ss_pred             HHHhhc--------------------c------------------------------h-HH-HHHHHHHHHhhhcccccc
Q 011277          133 SISATT--------------------R------------------------------N-LI-GMLLGRFVVGTGMGLGPT  160 (489)
Q Consensus       133 ~l~~~~--------------------~------------------------------~-~~-~l~~~R~l~G~g~g~~~~  160 (489)
                      ++.++-                    +                              + ++ .++++.++.|+|....++
T Consensus       177 ll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~t  256 (735)
T KOG3626|consen  177 LLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFT  256 (735)
T ss_pred             HHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCcc
Confidence            987641                    0                              0 12 456799999999999999


Q ss_pred             cccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhccccc----C-----------Cch---hHHHHHHHHHHHHHHH
Q 011277          161 VAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKE----I-----------AGW---WRICFWVSIVPAAILC  222 (489)
Q Consensus       161 ~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~----~-----------~~~---wr~~f~~~~i~~~~~~  222 (489)
                      ....|+=|...+++-..+.+++.....+|+++|.++|.....    .           ..|   |+.-|++.+...++..
T Consensus       257 lGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a  336 (735)
T KOG3626|consen  257 LGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSA  336 (735)
T ss_pred             CCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999888764321    1           124   6677777666666666


Q ss_pred             HHhhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCC----CCcchhHHHhhhccchhHHHHHHHHHH
Q 011277          223 LAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGD----DGDIVKFEELLYGRHFRVVFIGSTLFA  298 (489)
Q Consensus       223 ~~~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (489)
                      +.++++|.+..   ...+..+++ +.+. .+.+..      ..+.+...    ..-....+++++++.+....++.++..
T Consensus       337 ~p~f~fPk~lp---~~~~~~~~~-~~~~-~k~~~~------~~~~~~~~~~~ikdfp~s~~~ll~N~if~~~~l~~~~~~  405 (735)
T KOG3626|consen  337 VPLFFFPKELP---KSQKRKRAR-DLHV-LKTESG------GAKSDKTFGKKIKDFPKSIKRLLSNPIFMLVVLASVIES  405 (735)
T ss_pred             HHHHhCcccCc---cccccchhh-hhcc-cccccc------cccCCcchhhhHHHHHHHHHHHhcCchHHHHHHHHHHHH
Confidence            66777776532   111111100 0000 000000      00000000    001123455666655544444333322


Q ss_pred             HHhhhhHHHHHHhHHHHH-HhcCCCcchHHHHHHHH----HHHHHHHHHHHhhhcCC
Q 011277          299 LQQLSGINAIFYFSSSVF-KSAGLSSGLANVFVGIA----NLLGSVVAMVLMDKLGR  350 (489)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~----~~~g~~~~g~l~dr~gr  350 (489)
                      .    .+.....|.|.++ .+.+.++..+++..+..    ..+|.+++|++..|+..
T Consensus       406 ~----~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl  458 (735)
T KOG3626|consen  406 L----AITGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKL  458 (735)
T ss_pred             H----HHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecc
Confidence            2    2333334444444 45677777666665543    34677888999998854

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=98.98  E-value=8.1e-09  Score=105.18  Aligned_cols=157  Identities=16%  Similarity=0.074  Sum_probs=109.4

Q ss_pred             hHHHHHHhcCCC---cchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHH
Q 011277          311 FSSSVFKSAGLS---SGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVG  387 (489)
Q Consensus       311 ~~~~~~~~~~~~---~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  387 (489)
                      ..+.+.++.+.+   .++......++..++.++.|+++||+|||+.+..+.....++..+.....      ...  ..+.
T Consensus        24 ~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~------~~~--~l~~   95 (485)
T TIGR00711        24 AIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVAP------NLE--LMII   95 (485)
T ss_pred             HHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhCcC------CHH--HHHH
Confidence            344555555543   45677788899999999999999999999998888777666655433211      111  1111


Q ss_pred             HHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHH
Q 011277          388 GMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVK  467 (489)
Q Consensus       388 ~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~  467 (489)
                      ...+.+++.+ ...|....+..|.+|++.|+++.++......++..+++.+.+.+.+..+|.+.|.+.+.++++..+...
T Consensus        96 ~~~~~G~~~~-~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~  174 (485)
T TIGR00711        96 FRVIQGFGGG-PLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAF  174 (485)
T ss_pred             HHHHHHhhhh-hHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHHHH
Confidence            1122222211 233556678899999999999999999999999999998888777888888888887777666666665


Q ss_pred             hhcccCCCC
Q 011277          468 RNVVETKGK  476 (489)
Q Consensus       468 ~~~~et~~~  476 (489)
                      ...||++.+
T Consensus       175 ~~~~~~~~~  183 (485)
T TIGR00711       175 FILPRDKPA  183 (485)
T ss_pred             HHcCCcccc
Confidence            667775543

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>TIGR00900 2A0121 H+ Antiporter protein

Probab=98.97  E-value=2.4e-08  Score=97.36  Aligned_cols=140  Identities=15%  Similarity=0.098  Sum_probs=95.7

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccc
Q 011277          323 SGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGP  402 (489)
Q Consensus       323 ~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  402 (489)
                      .++......++..++.++.|+++||+|||+++..+.....++..+.......  .. ...+.......+.+++.+. ..|
T Consensus        36 ~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~l~g~~~~~-~~~  111 (365)
T TIGR00900        36 LSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALL--GG-LNIWQVYVLAGILAIAQAF-FTP  111 (365)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHc--CC-CcHHHHHHHHHHHHHHHHH-HHH
Confidence            4566677778888999999999999999999888776666555544333211  10 1111111222222222221 234


Q ss_pred             cccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHH
Q 011277          403 VPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFV  466 (489)
Q Consensus       403 ~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~  466 (489)
                      ....+.+|.+|++.|++..++......++..+++.+...+.+..++.+.+.+.++..++..++.
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~  175 (365)
T TIGR00900       112 AYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLI  175 (365)
T ss_pred             HHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence            5566889999999999999999999999999999888888888888888777666555554433

>TIGR00891 2A0112 putative sialic acid transporter

Probab=98.97  E-value=4.1e-09  Score=104.51  Aligned_cols=138  Identities=20%  Similarity=0.151  Sum_probs=106.1

Q ss_pred             hhhh-hhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHH-HHhhcchHHHHHHHHHHH
Q 011277           74 LESI-SLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGAS-ISATTRNLIGMLLGRFVV  151 (489)
Q Consensus        74 ~~~i-~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~-l~~~~~~~~~l~~~R~l~  151 (489)
                      +|.+ .+++|++.  .+.++..+...++..++.++.|+++||+|||+.+..+.++..+... +....++.+.+.+..++.
T Consensus       261 ~~~~~~~~~g~s~--~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (405)
T TIGR00891       261 LPTYLKADLGLSP--HTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLGLFFQ  338 (405)
T ss_pred             hHHHHHHHhCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCCchHHHHHHHHHH
Confidence            4444 34566654  3557888888999999999999999999999999887766533322 333455666677777888


Q ss_pred             hhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHH
Q 011277          152 GTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWV  213 (489)
Q Consensus       152 G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~  213 (489)
                      |+..++..+....++.|.+|+++||++.++......+|..+++++++.+.+..|.|+..+..
T Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~~~~~~  400 (405)
T TIGR00891       339 QMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLDEYGTALAS  400 (405)
T ss_pred             HHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHh
Confidence            87777777778889999999999999999999888999888998888887766645665543

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=98.96  E-value=2.5e-08  Score=101.72  Aligned_cols=156  Identities=15%  Similarity=0.044  Sum_probs=105.7

Q ss_pred             HHHHHHhcCCC---cchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHH
Q 011277          312 SSSVFKSAGLS---SGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGG  388 (489)
Q Consensus       312 ~~~~~~~~~~~---~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  388 (489)
                      .|.+.++.+.+   .++....+.++...+.+..|+++||+|||+.+..+.....++.+......     +   .+..+..
T Consensus        29 ~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~~~~a~-----~---~~~li~~  100 (495)
T PRK14995         29 APTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLAAAFSP-----T---ASWLIAT  100 (495)
T ss_pred             HHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHcC-----C---HHHHHHH
Confidence            44555554443   34566667778888889999999999999999888877777666544321     1   1111112


Q ss_pred             HHHHHHHHhcCcccccccccccc-CCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHH
Q 011277          389 MLMFVLTFALGAGPVPSLLLPEI-FPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVK  467 (489)
Q Consensus       389 ~~~~~~~~~~~~~~~~~~~~~e~-~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~  467 (489)
                      -.+.+++.+. ..|.......+. .|++.|+++.|+......++..++|.+.+.+.+..+|++.|.+...++++..++..
T Consensus       101 r~l~G~g~~~-~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~  179 (495)
T PRK14995        101 RALLAIGAAM-IVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMGLTA  179 (495)
T ss_pred             HHHHHHHHHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHH
Confidence            2222222221 223333334454 47899999999999999999999999988888888999999888777777766666


Q ss_pred             hhcccCCCC
Q 011277          468 RNVVETKGK  476 (489)
Q Consensus       468 ~~~~et~~~  476 (489)
                      +.+||.+++
T Consensus       180 ~~l~~~~~~  188 (495)
T PRK14995        180 RYVPRQAGR  188 (495)
T ss_pred             HhCCCCCCC
Confidence            677775443

>PRK09952 shikimate transporter; Provisional

Probab=98.96  E-value=8.8e-09  Score=103.29  Aligned_cols=152  Identities=16%  Similarity=0.128  Sum_probs=99.0

Q ss_pred             hhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhh---c-chHHHHHHHHHHHhh
Q 011277           78 SLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISAT---T-RNLIGMLLGRFVVGT  153 (489)
Q Consensus        78 ~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~---~-~~~~~l~~~R~l~G~  153 (489)
                      .+++|.+.+.  .............++.++.|+++||+|||+++..+.++..++......   . ++...+++.-++.|+
T Consensus       278 ~~~~g~s~~~--~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  355 (438)
T PRK09952        278 TQNLGLPREL--FLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANI  355 (438)
T ss_pred             HHhcCCCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence            4566765432  223333444455678889999999999999998877665554433322   2 234444456677788


Q ss_pred             hcccccccccccccccCCcccchhhhhH-HHHHHHHHHHHHHHhhcccccCC-chhHHHHHHHHHHHHHHHHHhhhccCC
Q 011277          154 GMGLGPTVAALYVTEVSPPFVRGTYGAF-IQIATCLGLMGSLLIGIPVKEIA-GWWRICFWVSIVPAAILCLAMVFCAES  231 (489)
Q Consensus       154 g~g~~~~~~~~~i~e~~~~~~Rg~~~~~-~~~~~~~G~~~g~~~~~~l~~~~-~~wr~~f~~~~i~~~~~~~~~~~~~Es  231 (489)
                      +.+...+....++.|.+|++.|+...++ +.++..+|...+|.+...+.+.. +.|+..+....+..++..+..+..+|+
T Consensus       356 ~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~  435 (438)
T PRK09952        356 AHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALLMKDN  435 (438)
T ss_pred             HHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcccc
Confidence            8777777778899999999999888887 44555577777777766664432 336777766555555544444455554

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=98.94  E-value=4.6e-08  Score=97.20  Aligned_cols=153  Identities=14%  Similarity=0.096  Sum_probs=102.7

Q ss_pred             HHHHhcCCCc---chHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHH
Q 011277          314 SVFKSAGLSS---GLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGML  390 (489)
Q Consensus       314 ~~~~~~~~~~---~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  390 (489)
                      .+.++.+.+.   +.......++..++.++.|+++||+|||+.+..+.....++........     + ... + +....
T Consensus        38 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~-----~-~~~-l-~~~~~  109 (406)
T PRK15402         38 AVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLAQ-----S-IEQ-F-TLLRF  109 (406)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHc-----c-HHH-H-HHHHH
Confidence            3444555443   3455667788889999999999999999998887766666555443221     1 111 1 11111


Q ss_pred             HHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHhhc
Q 011277          391 MFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNV  470 (489)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  470 (489)
                      +.+.+.+ ...+....+..|.+|++.|.+..++......++..++|.+...+.+..++.+.+.+.+.++++..+..+...
T Consensus       110 l~G~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~~  188 (406)
T PRK15402        110 LQGIGLC-FIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALAALSFFGLWRAM  188 (406)
T ss_pred             HHHhHhh-hHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHhC
Confidence            1122111 112445567789999999999999988888888888888777777777888888888887777766666667


Q ss_pred             ccCCC
Q 011277          471 VETKG  475 (489)
Q Consensus       471 ~et~~  475 (489)
                      ||+++
T Consensus       189 ~~~~~  193 (406)
T PRK15402        189 PETAG  193 (406)
T ss_pred             CCCCc
Confidence            88754

>TIGR00897 2A0118 polyol permease family

Probab=98.94  E-value=1.1e-08  Score=101.53  Aligned_cols=150  Identities=11%  Similarity=0.062  Sum_probs=106.0

Q ss_pred             ccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHH-HhHHHHHHHHHHHhh-----cchHHHH
Q 011277           71 NEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQ-LCALPMIIGASISAT-----TRNLIGM  144 (489)
Q Consensus        71 ~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~-~~~~~~~i~~~l~~~-----~~~~~~l  144 (489)
                      ....|.+.+++|.+.+  +.++..+...++..++.++.|+++||+|||+.+. .+.+...++......     .++.+.+
T Consensus       242 ~~~~p~~~~~~g~s~~--~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~  319 (402)
T TIGR00897       242 AVFLPMFVAELGFSTS--EWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGHSFAVA  319 (402)
T ss_pred             HHHHHHHHHHcCCChh--HHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccCCcHHHH
Confidence            3456777788887654  3467777788899999999999999999988764 333333333333221     3456667


Q ss_pred             HHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHHHHH
Q 011277          145 LLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLA  224 (489)
Q Consensus       145 ~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~i~~~~~~~~  224 (489)
                      .+..++.|++.+...+. ...+.|..| ++||+..++++....+|..++|.+++.+.+..| |+..+++.++..++..+.
T Consensus       320 ~~~~~~~G~~~~~~~~~-~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g-~~~~~~~~a~~~~i~~~~  396 (402)
T TIGR00897       320 LIIAIALGIFLAGYVPL-AAVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFG-AIGVVWIFAALYVVSAFL  396 (402)
T ss_pred             HHHHHHHHHHHHHHHHH-HHHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-hHHHHHHHHHHHHHHHHH
Confidence            77888899887765443 345677654 589999999999999999999988887777777 477777655544444443


Q ss_pred             h
Q 011277          225 M  225 (489)
Q Consensus       225 ~  225 (489)
                      .
T Consensus       397 ~  397 (402)
T TIGR00897       397 T  397 (402)
T ss_pred             H
Confidence            3

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=98.94  E-value=4.7e-08  Score=95.56  Aligned_cols=149  Identities=14%  Similarity=0.099  Sum_probs=92.8

Q ss_pred             HHHhcCCC---cchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHH
Q 011277          315 VFKSAGLS---SGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLM  391 (489)
Q Consensus       315 ~~~~~~~~---~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  391 (489)
                      +.++.+.+   .++......++..++.++.|+++||+|||+.+..+.+...++..+......     .  .+......++
T Consensus        28 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~~-----~--~~~~~~~~~~  100 (366)
T TIGR00886        28 IKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQ-----S--YSVLLLLRLF  100 (366)
T ss_pred             HHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhh-----h--HHHHHHHHHH
Confidence            33444544   456667778889999999999999999999998888777776655443320     1  1111111222


Q ss_pred             HHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH----------hCCchhh-HHHHHHHH
Q 011277          392 FVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQ----------LGPQLLY-SIFGTFCL  460 (489)
Q Consensus       392 ~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~----------~g~~~~~-~~~~~~~~  460 (489)
                      .+.+  .+..+....+.+|.+|++.|+++.++.....+++..+++.+.+.+...          .+|.+.+ ...+.+..
T Consensus       101 ~g~~--~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~  178 (366)
T TIGR00886       101 IGIA--GGSFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAGILL  178 (366)
T ss_pred             HHHh--chhhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHH
Confidence            2222  122233445788999999999999999888888877777766555442          2567766 33344443


Q ss_pred             HHHHHHHhhccc
Q 011277          461 MAVAFVKRNVVE  472 (489)
Q Consensus       461 ~~~~~~~~~~~e  472 (489)
                      +..+......+|
T Consensus       179 ~~~~~~~~~~~~  190 (366)
T TIGR00886       179 LPALLIFFVGAD  190 (366)
T ss_pred             HHHHHHHHhccc
Confidence            333333333444

>PRK12307 putative sialic acid transporter; Provisional

Probab=98.93  E-value=4.1e-08  Score=98.19  Aligned_cols=154  Identities=20%  Similarity=0.266  Sum_probs=99.6

Q ss_pred             hHHHHHHhcCCC---cchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHH
Q 011277          311 FSSSVFKSAGLS---SGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVG  387 (489)
Q Consensus       311 ~~~~~~~~~~~~---~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  387 (489)
                      ..+.+.++.+.+   .++......++..++.++.|+++||+|||+.+..+.....++..+......        .+....
T Consensus        40 ~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~--------~~~l~~  111 (426)
T PRK12307         40 IMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLASG--------VIMLTL  111 (426)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhH--------HHHHHH
Confidence            334444455544   345566677888999999999999999999998888877777665443321        111111


Q ss_pred             HHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHH
Q 011277          388 GMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVK  467 (489)
Q Consensus       388 ~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~  467 (489)
                      .-.+.+++.+ +..+....+..|.+|++.|+++.++......++..+++.+...+.+..+|.+.+.+... ..+...+..
T Consensus       112 ~r~l~G~g~g-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~~~-~~~~~~~~~  189 (426)
T PRK12307        112 SRFIVGMGMA-GEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGLL-PVLLVIYIR  189 (426)
T ss_pred             HHHHHHHHHh-hHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHHHHH-HHHHHHHHH
Confidence            1111122111 12344556789999999999999999888888888888777766667788777765433 333333334


Q ss_pred             hhcccCC
Q 011277          468 RNVVETK  474 (489)
Q Consensus       468 ~~~~et~  474 (489)
                      ...||++
T Consensus       190 ~~~p~~~  196 (426)
T PRK12307        190 ARAPESK  196 (426)
T ss_pred             HHCCCCh
Confidence            4466654

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=98.93  E-value=6.7e-09  Score=86.03  Aligned_cols=136  Identities=20%  Similarity=0.173  Sum_probs=95.1

Q ss_pred             HHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccc
Q 011277          329 FVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLL  408 (489)
Q Consensus       329 ~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (489)
                      ...++.+++.+..+++.||+|||+.+..+.....++........     +   .+.............+ ...+....+.
T Consensus         6 ~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~-----~---~~~~~~~~~~~g~~~~-~~~~~~~~~~   76 (141)
T TIGR00880         6 GYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSS-----N---ITVLIIARFLQGFGAA-FALVAGAALI   76 (141)
T ss_pred             eehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhc-----c---HHHHHHHHHHHHHHHH-HHHHhHHHHH
Confidence            34577788899999999999999988777666555544433211     1   1111111222222222 1234556678


Q ss_pred             cccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHhhcccC
Q 011277          409 PEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNVVET  473 (489)
Q Consensus       409 ~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~et  473 (489)
                      .|.+|++.|++..++.+...+++..+++.+.+.+.+..++...+.+.+.+.++..+......|||
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (141)
T TIGR00880        77 ADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPET  141 (141)
T ss_pred             HHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence            99999999999999999999999999998888777777777788887777777777666667764

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=98.93  E-value=2.7e-08  Score=99.42  Aligned_cols=137  Identities=12%  Similarity=0.069  Sum_probs=92.3

Q ss_pred             cCCCc---chHHHHHHHHHHHHHHHHHHHhhhc-CCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHH
Q 011277          319 AGLSS---GLANVFVGIANLLGSVVAMVLMDKL-GRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVL  394 (489)
Q Consensus       319 ~~~~~---~~~~~~~~i~~~~g~~~~g~l~dr~-grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  394 (489)
                      .+.+.   +.......+...++.+++|+++||+ |||+.+.++.+...++.+++.....    .....+   ..+.+...
T Consensus        40 lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~----~~~~~~---l~l~li~i  112 (493)
T PRK15462         40 LKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEI----HPSFLY---LSLAIIVC  112 (493)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhc----chhHHH---HHHHHHHH
Confidence            45543   3444555567778889999999999 9999998888877776554321110    001111   11112122


Q ss_pred             HHhcCccccccccccccCCch--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHH
Q 011277          395 TFALGAGPVPSLLLPEIFPSR--IRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAV  463 (489)
Q Consensus       395 ~~~~~~~~~~~~~~~e~~p~~--~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~  463 (489)
                      +.+ ...|....+.+|.||++  .|.++.++..+..++++.++|.+.+.+.+..|+...|.+.++..+++.
T Consensus       113 G~G-~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l~l  182 (493)
T PRK15462        113 GYG-LFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGL  182 (493)
T ss_pred             hcc-cccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHH
Confidence            221 12355567899999986  799999999999999999999999988888898888877665444443

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=98.92  E-value=4e-08  Score=97.30  Aligned_cols=147  Identities=16%  Similarity=0.111  Sum_probs=97.5

Q ss_pred             HhcCCCc---chHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHH
Q 011277          317 KSAGLSS---GLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFV  393 (489)
Q Consensus       317 ~~~~~~~---~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  393 (489)
                      ++.+.+.   |+......+...+..++.|+++||+|||+++..+.....++........     . . ..+. ....+.+
T Consensus        39 ~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~-----~-~-~~l~-~~~~l~g  110 (400)
T PRK11646         39 DQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAH-----E-P-WLLW-LSCILSG  110 (400)
T ss_pred             HHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhc-----c-H-HHHH-HHHHHHH
Confidence            4445543   4444444566666678899999999999999888777777665543321     1 1 1111 1122222


Q ss_pred             HHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHhhcccC
Q 011277          394 LTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNVVET  473 (489)
Q Consensus       394 ~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~et  473 (489)
                      ++.+ ...|....+..|.+|++.|+++.++.....+++..++|.+.+.+. ..++.+.|.+.+..+++..+......||.
T Consensus       111 ~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~i~~~~~~~~~  188 (400)
T PRK11646        111 LGGT-LFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATGAVLFVLAAAFNAWLLPAY  188 (400)
T ss_pred             HHHH-HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence            2221 123445567889999999999999999999999999998877776 67888888777766665554444456664

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=98.92  E-value=1.2e-08  Score=102.16  Aligned_cols=151  Identities=18%  Similarity=0.161  Sum_probs=118.4

Q ss_pred             hhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhh--HHHHHhHHHHHHHHHHHhh--------cchHHHHHHH
Q 011277           78 SLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRR--RAFQLCALPMIIGASISAT--------TRNLIGMLLG  147 (489)
Q Consensus        78 ~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr--~~~~~~~~~~~i~~~l~~~--------~~~~~~l~~~  147 (489)
                      .+++|++..+.  ....-...+..++|++++|++.||+|.|  +++..+++++.+..+...+        .++-+.+.+.
T Consensus       309 ~~~lg~s~~~l--~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~  386 (477)
T PF11700_consen  309 TEVLGMSTTQL--IVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVL  386 (477)
T ss_pred             HHhcCcCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHH
Confidence            44788876553  3444445666779999999999999999  8999988888776666655        6788888899


Q ss_pred             HHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHHHHHhhh
Q 011277          148 RFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVF  227 (489)
Q Consensus       148 R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~i~~~~~~~~~~~  227 (489)
                      -++.|+..|+..+.+..+.+|+.|+++.+...+++.+..-....+||++-+.+.+..+.-|+.++...+..++.+++...
T Consensus       387 a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~  466 (477)
T PF11700_consen  387 AVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILLFF  466 (477)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999999887776665554577776544444444444444


Q ss_pred             ccC
Q 011277          228 CAE  230 (489)
Q Consensus       228 ~~E  230 (489)
                      +++
T Consensus       467 v~~  469 (477)
T PF11700_consen  467 VDV  469 (477)
T ss_pred             ccc
Confidence            433

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=98.92  E-value=7.8e-08  Score=91.99  Aligned_cols=152  Identities=17%  Similarity=0.150  Sum_probs=112.2

Q ss_pred             hHHHHHHhcCCCc---chHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHH
Q 011277          311 FSSSVFKSAGLSS---GLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVG  387 (489)
Q Consensus       311 ~~~~~~~~~~~~~---~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  387 (489)
                      ..+++-++.+.+.   |+....++.+..+++++...+.||+.||++++....++.++.++....++..       .+.+.
T Consensus        35 LLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~alAp~f~-------~Ll~a  107 (394)
T COG2814          35 LLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFA-------VLLLA  107 (394)
T ss_pred             chHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHhccHH-------HHHHH
Confidence            3456666666664   5667778899999999999999999999999988888888887766554321       11111


Q ss_pred             HHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHH
Q 011277          388 GMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVK  467 (489)
Q Consensus       388 ~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~  467 (489)
                      - ++..+..+ ...++.....+++.|+++|++++++...-..+...++.-+...+-+.+||+.+|.+.+.+.++..+..+
T Consensus       108 R-~~~g~a~G-~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~  185 (394)
T COG2814         108 R-ALAGLAHG-VFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLW  185 (394)
T ss_pred             H-HHHHHHHH-HHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence            1 11111111 112355668899999999999999998877776666666666666789999999999999999999888


Q ss_pred             hhcc
Q 011277          468 RNVV  471 (489)
Q Consensus       468 ~~~~  471 (489)
                      ..+|
T Consensus       186 ~~lP  189 (394)
T COG2814         186 KLLP  189 (394)
T ss_pred             HhCC
Confidence            8899

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=98.91  E-value=9.4e-08  Score=96.35  Aligned_cols=157  Identities=15%  Similarity=0.074  Sum_probs=95.7

Q ss_pred             hHHHHHHhcCCC---cchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHH
Q 011277          311 FSSSVFKSAGLS---SGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVG  387 (489)
Q Consensus       311 ~~~~~~~~~~~~---~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  387 (489)
                      ..+.+.+. +.+   .++......++..++.++.|+++||+|||+++..+..+..++.+........  ..  ..+..+.
T Consensus        51 ~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~--~~--~~~~~~~  125 (452)
T PRK11273         51 AMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWA--TS--SIAVMFV  125 (452)
T ss_pred             hhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcc--cc--cHHHHHH
Confidence            33444444 544   3456667778888999999999999999999888877766666544332110  01  1111122


Q ss_pred             HHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHH-HHHHHHhCCchhhHHHHHHHHHHHHHH
Q 011277          388 GMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLF-LRLLEQLGPQLLYSIFGTFCLMAVAFV  466 (489)
Q Consensus       388 ~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~g~~~~~~~~~~~~~~~~~~~  466 (489)
                      ...+.+++.+... |.......|.+|++.|++++++.+....+++.+.+.+. ..+....+|.+.|.+.+.++++..++.
T Consensus       126 ~~~l~gi~~g~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~~l~  204 (452)
T PRK11273        126 LLFLCGWFQGMGW-PPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAILVALFA  204 (452)
T ss_pred             HHHHHHHHHhccc-hHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence            2222233333222 33334578899999999999998888777764433332 222233477778888777766655555


Q ss_pred             HhhcccC
Q 011277          467 KRNVVET  473 (489)
Q Consensus       467 ~~~~~et  473 (489)
                      ...+||+
T Consensus       205 ~~~~~~~  211 (452)
T PRK11273        205 FAMMRDT  211 (452)
T ss_pred             HHHccCC
Confidence            5566665

>PRK10091 MFS transport protein AraJ; Provisional

Probab=98.90  E-value=6.2e-08  Score=95.43  Aligned_cols=154  Identities=16%  Similarity=0.166  Sum_probs=104.4

Q ss_pred             HHHHHhcCCC---cchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHH
Q 011277          313 SSVFKSAGLS---SGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGM  389 (489)
Q Consensus       313 ~~~~~~~~~~---~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (489)
                      +...++.+.+   .++......++..++.++.|++.||+|||+++..+....+++.++.....     + ... +.+ ..
T Consensus        27 ~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~~-----~-~~~-l~~-~r   98 (382)
T PRK10091         27 TELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLSS-----S-YLM-LAI-GR   98 (382)
T ss_pred             HHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHhC-----c-HHH-HHH-HH
Confidence            3444455544   45666777899999999999999999999999888777776665543321     1 111 111 11


Q ss_pred             HHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHhh
Q 011277          390 LMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRN  469 (489)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  469 (489)
                      .+.+.+.+. ..+....+..|.+|++.|++.++.......++..+++.+...+.+..++++.|.+.+.+.++..+...+.
T Consensus        99 ~l~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~  177 (382)
T PRK10091         99 LVSGFPHGA-FFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLASIYFW  177 (382)
T ss_pred             HHHHhhhHH-HHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHh
Confidence            222222111 1233445678999999999999998888888888888776667677888888888888776666655667


Q ss_pred             cccCCC
Q 011277          470 VVETKG  475 (489)
Q Consensus       470 ~~et~~  475 (489)
                      +||.+.
T Consensus       178 lp~~~~  183 (382)
T PRK10091        178 VPDIRD  183 (382)
T ss_pred             CCCCCc
Confidence            888643

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=98.90  E-value=5.1e-08  Score=96.45  Aligned_cols=155  Identities=12%  Similarity=0.072  Sum_probs=100.5

Q ss_pred             HHHHHhcCCCc---chHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHH
Q 011277          313 SSVFKSAGLSS---GLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGM  389 (489)
Q Consensus       313 ~~~~~~~~~~~---~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (489)
                      +.+.++.+.+.   ++......++..++.++.|+++||+|||+.+..+.....++........     + .. .+ ....
T Consensus        32 ~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~-----~-~~-~l-~~~~  103 (394)
T PRK11652         32 ADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAH-----S-LT-VL-IAAS  103 (394)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHc-----c-HH-HH-HHHH
Confidence            34445555543   4556667788889999999999999999998887766666555433221     1 11 11 1111


Q ss_pred             HHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHhh
Q 011277          390 LMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRN  469 (489)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  469 (489)
                      .+.+++.+. ..+....+..|.+|.+.|+.+.++......++..++|.+...+.+..++.+.|.+.+.+.++..+.....
T Consensus       104 ~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~  182 (394)
T PRK11652        104 AIQGLGTGV-GGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTFSMARW  182 (394)
T ss_pred             HHHHhhhhH-HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHh
Confidence            111221111 1234445678889999999999988877777777888777777677788888887777666555555556


Q ss_pred             cccCCCC
Q 011277          470 VVETKGK  476 (489)
Q Consensus       470 ~~et~~~  476 (489)
                      .||++..
T Consensus       183 ~~~~~~~  189 (394)
T PRK11652        183 MPETRPA  189 (394)
T ss_pred             CCccCcc
Confidence            7886543

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=98.90  E-value=3.6e-08  Score=93.31  Aligned_cols=159  Identities=14%  Similarity=0.136  Sum_probs=118.4

Q ss_pred             HHHHHhcCCC---cchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHH
Q 011277          313 SSVFKSAGLS---SGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGM  389 (489)
Q Consensus       313 ~~~~~~~~~~---~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (489)
                      +.+..+.+++   .|.......+..-++.++.|.++||.+.|..+..++++.+++.+++....        ...+.....
T Consensus        53 p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai~nil~Gfs~--------s~~~~~~l~  124 (448)
T COG2271          53 PALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILFGFSP--------SLFLFAVLW  124 (448)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHHHHHHHhhhh--------HHHHHHHHH
Confidence            3444444454   35667778889999999999999999999999999888888877765433        222333334


Q ss_pred             HHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHH--HHHHHHhCCchhhHHHHHHHHHHHHHHH
Q 011277          390 LMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLF--LRLLEQLGPQLLYSIFGTFCLMAVAFVK  467 (489)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~g~~~~~~~~~~~~~~~~~~~~  467 (489)
                      .+-+...++|+.|+.. .+..-||++.||+..++=+..+++|+.+.+.+.  ....++.++...|.+-++++++..++.+
T Consensus       125 ~lng~fQg~Gwpp~~~-~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~  203 (448)
T COG2271         125 VLNGWFQGMGWPPCAR-TITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILL  203 (448)
T ss_pred             HHHHHHhcCCCcHHHH-HHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHH
Confidence            4445566777766655 578889999999999999999999999999887  6666667888999988888877766554


Q ss_pred             hh---cccCCCCCHHH
Q 011277          468 RN---VVETKGKSLQE  480 (489)
Q Consensus       468 ~~---~~et~~~~~~e  480 (489)
                      +.   .||+.|.+--|
T Consensus       204 ~~~rd~Pqs~GLP~ie  219 (448)
T COG2271         204 FLLRDRPQSEGLPPIE  219 (448)
T ss_pred             HHhCCCccccCCCCHH
Confidence            44   57777765433

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=98.89  E-value=6.1e-07  Score=86.35  Aligned_cols=180  Identities=16%  Similarity=0.138  Sum_probs=125.1

Q ss_pred             HHHHHHHHhhhhccceeeccch-hhhhh-hcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHH
Q 011277           53 VLVATLSSFLFGYHLGVVNEPL-ESISL-DLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMII  130 (489)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~-~~i~~-~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i  130 (489)
                      ..++|+..|+..+.-+  -|.+ |.+.+ |.|++.++... -+.-...-.+....++...++|..|-||+++++.+...+
T Consensus         7 ~~llc~~gf~~~frPs--EPfl~~yL~~~~kn~T~~qv~~-~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~   83 (412)
T PF01770_consen    7 TLLLCLFGFFKEFRPS--EPFLTPYLTGPDKNFTEEQVNN-EIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYII   83 (412)
T ss_pred             HHHHHHHHHHHhcCCC--CccchHHHcCCccCCCHHHHHH-hhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            4555666566544322  1111 22333 36777655432 344445556667778899999999999999999999999


Q ss_pred             HHHHHhhcchHHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCc-hhHH
Q 011277          131 GASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAG-WWRI  209 (489)
Q Consensus       131 ~~~l~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~-~wr~  209 (489)
                      ...+.-+.++...+-+..++-|++.+... +..+|+--..|+++--++.+....+..+|-..+.++|-.+....+ ..+.
T Consensus        84 t~~lll~~~sv~~mq~~q~~yg~~~a~ev-ay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~  162 (412)
T PF01770_consen   84 TWLLLLFGTSVLAMQLMQFFYGLATAAEV-AYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQ  162 (412)
T ss_pred             HHHHHHHHCcHHHHHHHHHHHHHHHHHHH-HHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH
Confidence            99999999999999999999999987754 555777777788777788888888888888777777765443221 1466


Q ss_pred             HHHHHHHHHHHHHHHhhhccCChHHHH
Q 011277          210 CFWVSIVPAAILCLAMVFCAESPHWLY  236 (489)
Q Consensus       210 ~f~~~~i~~~~~~~~~~~~~Esp~~l~  236 (489)
                      .+++......+.++..+++|..++-+.
T Consensus       163 L~~isl~~~~~a~~~~~fLP~~~~S~~  189 (412)
T PF01770_consen  163 LNYISLASVSLALLIALFLPMPKRSLF  189 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCCcccc
Confidence            666665555555566677777655333

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PRK10504 putative transporter; Provisional

Probab=98.89  E-value=1e-07  Score=96.70  Aligned_cols=154  Identities=14%  Similarity=-0.003  Sum_probs=103.2

Q ss_pred             hHHHHHHhcCCCc---chHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHH
Q 011277          311 FSSSVFKSAGLSS---GLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVG  387 (489)
Q Consensus       311 ~~~~~~~~~~~~~---~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  387 (489)
                      ..+.+.++.+.+.   ++......++..++.++.|+++||+|||+++..+.....++.++....     .+ ..  ..+.
T Consensus        32 ~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~-----~~-~~--~l~~  103 (471)
T PRK10504         32 ALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCALS-----GT-LN--ELLL  103 (471)
T ss_pred             HHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHh-----CC-HH--HHHH
Confidence            4455556566553   345566667888899999999999999999887766665555443221     11 11  1111


Q ss_pred             HHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHH
Q 011277          388 GMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVK  467 (489)
Q Consensus       388 ~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~  467 (489)
                      ...+.+++.+. ..|....+..|.+|++.|+++.++.....+++..++|.+...+.+..+|.+.|.+....+.+..+...
T Consensus       104 ~~~l~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~~  182 (471)
T PRK10504        104 ARVLQGVGGAM-MVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATL  182 (471)
T ss_pred             HHHHHHhhhHH-HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHH
Confidence            12222222211 23455567889999999999999999999999999998888888888888888777666666655555


Q ss_pred             hhcccC
Q 011277          468 RNVVET  473 (489)
Q Consensus       468 ~~~~et  473 (489)
                      ...|+.
T Consensus       183 ~~~~~~  188 (471)
T PRK10504        183 MLMPNY  188 (471)
T ss_pred             HhCCCc
Confidence            555554

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=98.88  E-value=4.5e-08  Score=98.05  Aligned_cols=143  Identities=13%  Similarity=0.098  Sum_probs=86.6

Q ss_pred             HHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcC-ccccccccc
Q 011277          330 VGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALG-AGPVPSLLL  408 (489)
Q Consensus       330 ~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  408 (489)
                      ..++..+|+++.|+++||+|||+.+..+.....++.++.....+............  ..+-+..+.+.| ..|....++
T Consensus        72 ~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~R~l~G~g~g~~~~~~~~~i  149 (432)
T PRK10406         72 GFLMRPIGGWLFGRIADKHGRKKSMLISVCMMCFGSLVIACLPGYETIGTWAPALL--LLARLFQGLSVGGEYGTSATYM  149 (432)
T ss_pred             HHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHH--HHHHHHHHhhhhhhHhhHHHHH
Confidence            34555589999999999999999998888877777666543321100000001111  112222233332 346667789


Q ss_pred             cccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHH--------HHhCCchhhHHHHHHHHHHHHHHHhhcccCCC
Q 011277          409 PEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLL--------EQLGPQLLYSIFGTFCLMAVAFVKRNVVETKG  475 (489)
Q Consensus       409 ~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~--------~~~g~~~~~~~~~~~~~~~~~~~~~~~~et~~  475 (489)
                      +|.+|+++|+...++.......+..+++.+...+.        ...||+..|.+.++..++. .+....+||++.
T Consensus       150 ~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~-~~~~~~~~e~~~  223 (432)
T PRK10406        150 SEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVA-LWLRRQLDETSQ  223 (432)
T ss_pred             HHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHH-HHHHhcCCCCch
Confidence            99999999999988876555555555444322221        2468888887766655544 344556788654

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=98.87  E-value=9.8e-09  Score=99.66  Aligned_cols=150  Identities=20%  Similarity=0.177  Sum_probs=102.1

Q ss_pred             HHHHhcCCC---cchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHH
Q 011277          314 SVFKSAGLS---SGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGML  390 (489)
Q Consensus       314 ~~~~~~~~~---~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  390 (489)
                      .+.++.+.+   .++......++..++.++.|+++||+|||+++..+.....++..+....     .+ ..  ..+...+
T Consensus        22 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~-----~~-~~--~~~~~~~   93 (352)
T PF07690_consen   22 YLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFA-----SN-FW--LLLIARF   93 (352)
T ss_dssp             HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHH-----CC-HH--HHHHHHH
T ss_pred             HHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhh-----hh-HH--HHhhhcc
Confidence            334444443   4566667778889999999999999999999888888777773333322     11 11  1122222


Q ss_pred             HHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHhhc
Q 011277          391 MFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNV  470 (489)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  470 (489)
                      +.+++.+ ...+....+..|.+|++.|++..++......++..+++.+...+.+..++.+.|.+.+.++++..++.....
T Consensus        94 l~g~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il~~~~~  172 (352)
T PF07690_consen   94 LLGIGSG-FFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAILFILFL  172 (352)
T ss_dssp             HHHHHHH-HHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHHHHCCC
T ss_pred             ccccccc-cccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccchhhhhhhhHhhhh
Confidence            2222221 234556668999999999999999999999999999988877776677788888888888877766433334


Q ss_pred             cc
Q 011277          471 VE  472 (489)
Q Consensus       471 ~e  472 (489)
                      +|
T Consensus       173 ~~  174 (352)
T PF07690_consen  173 PE  174 (352)
T ss_dssp             --
T ss_pred             hh
Confidence            33

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=98.86  E-value=4e-08  Score=96.76  Aligned_cols=131  Identities=11%  Similarity=0.016  Sum_probs=106.3

Q ss_pred             chhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhcchHHHHHHHHHHHh
Q 011277           73 PLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVG  152 (489)
Q Consensus        73 ~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l~~~R~l~G  152 (489)
                      ..|.+.+|.|.+.  .+.|...+...++..++.++.|++.||+|+|+.+..+.++..++.++.+.+++.+.+++..++.|
T Consensus       227 ~~~~~~~~~g~s~--~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g  304 (382)
T PRK11128        227 FSAIYWQAAGYSA--STIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILHC  304 (382)
T ss_pred             HHHHHHHHCCCCH--hHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            3455557777763  34577777777788889999999999999999999999988888888888899999999999999


Q ss_pred             hhcccccccccccccccCCcccchhhhhHHH-HHHHHHHHHHHHhhcccccCCch
Q 011277          153 TGMGLGPTVAALYVTEVSPPFVRGTYGAFIQ-IATCLGLMGSLLIGIPVKEIAGW  206 (489)
Q Consensus       153 ~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~-~~~~~G~~~g~~~~~~l~~~~~~  206 (489)
                      ++.+...+....++.+. +++++++..+.+. ....+|..+|+.+++.+.+..++
T Consensus       305 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~  358 (382)
T PRK11128        305 GTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGA  358 (382)
T ss_pred             HHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH
Confidence            99988888888888886 5666788888775 66677878889998888777664

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=98.85  E-value=6.8e-08  Score=94.90  Aligned_cols=152  Identities=16%  Similarity=0.148  Sum_probs=104.7

Q ss_pred             HHHHhcCCC---cchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHH
Q 011277          314 SVFKSAGLS---SGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGML  390 (489)
Q Consensus       314 ~~~~~~~~~---~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  390 (489)
                      .+.++.+.+   .+.......++..++.++.|+++||+|||+.+..+.....++........     + ..  .......
T Consensus        16 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~-----~-~~--~~~~~~~   87 (377)
T PRK11102         16 VIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQ-----T-ID--QLIYMRF   87 (377)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHc-----c-HH--HHHHHHH
Confidence            333444444   34555667788889999999999999999998888777666665543321     1 11  1111112


Q ss_pred             HHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHhhc
Q 011277          391 MFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNV  470 (489)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  470 (489)
                      +.+++.+ ...+....+..|.+|++.|++..++......++..+++.+...+.+..++.+.|.+.+.++++..++....+
T Consensus        88 l~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (377)
T PRK11102         88 LHGLAAA-AASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALVFFFI  166 (377)
T ss_pred             HHHHHHH-HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhC
Confidence            2222221 123445567899999999999999999999999999998887787888888888888877777666655667


Q ss_pred             ccCC
Q 011277          471 VETK  474 (489)
Q Consensus       471 ~et~  474 (489)
                      ||++
T Consensus       167 ~~~~  170 (377)
T PRK11102        167 PETL  170 (377)
T ss_pred             CccC
Confidence            7754

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=98.84  E-value=1.1e-07  Score=95.51  Aligned_cols=146  Identities=12%  Similarity=0.038  Sum_probs=95.0

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccc
Q 011277          323 SGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGP  402 (489)
Q Consensus       323 ~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  402 (489)
                      .++......++..++.++.|+++||+|||+.+..+.+..+++......... . .  ...........+.+++.+.. .+
T Consensus        63 ~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~-~-~--~~~~~l~~~~~l~g~~~g~~-~~  137 (438)
T TIGR00712        63 LGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPW-A-T--SSIAIMFVLLFLNGWFQGMG-WP  137 (438)
T ss_pred             hHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhcccc-c-c--chHHHHHHHHHHHHHHhhcc-hH
Confidence            355666777888899999999999999999888776666665554322110 0 0  11111111122222222222 23


Q ss_pred             cccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCchhhHHHHHHHHHHHHHHHhhcccC
Q 011277          403 VPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLE-QLGPQLLYSIFGTFCLMAVAFVKRNVVET  473 (489)
Q Consensus       403 ~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~et  473 (489)
                      .......|.+|++.|++++++.+....+++.+++.+.....+ ..+|+..|.+.++++++..+.....+||+
T Consensus       138 ~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~  209 (438)
T TIGR00712       138 PCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVALFAFAMMRDT  209 (438)
T ss_pred             HHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhccCC
Confidence            334567899999999999999998888888888776554443 45788888888877766655555556664

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=98.82  E-value=3.4e-08  Score=96.86  Aligned_cols=153  Identities=13%  Similarity=0.080  Sum_probs=102.4

Q ss_pred             HHHHHhcCCC---cchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHH
Q 011277          313 SSVFKSAGLS---SGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGM  389 (489)
Q Consensus       313 ~~~~~~~~~~---~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (489)
                      +.+.++.+.+   .++......++..++.++.|+++||+|||+.+..+.....++.++......        .+..+...
T Consensus        19 ~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~   90 (379)
T TIGR00881        19 PYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTS--------LWVMAALW   90 (379)
T ss_pred             HHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhhh--------HHHHHHHH
Confidence            3333444443   456667778889999999999999999999998887777766655443321        11111112


Q ss_pred             HHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHH-HHHHHHHHhCCchhhHHHHHHHHHHHHHHHh
Q 011277          390 LMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGL-LFLRLLEQLGPQLLYSIFGTFCLMAVAFVKR  468 (489)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~  468 (489)
                      .+.+++.+ ...|....+..|.+|++.|+++.++.+....++..+++. ....+.+..++.+.|.+.+.++++..+....
T Consensus        91 ~~~g~~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (379)
T TIGR00881        91 ALNGIFQG-MGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIVSLICFL  169 (379)
T ss_pred             HHHHhhcc-ccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhe
Confidence            22222222 234566678899999999999999999998898888884 4444455667888887777776666555555


Q ss_pred             hcccCC
Q 011277          469 NVVETK  474 (489)
Q Consensus       469 ~~~et~  474 (489)
                      ..||++
T Consensus       170 ~~~~~~  175 (379)
T TIGR00881       170 LLRDSP  175 (379)
T ss_pred             eeCCCc
Confidence            565543

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=98.82  E-value=1.2e-07  Score=93.77  Aligned_cols=137  Identities=12%  Similarity=0.042  Sum_probs=90.2

Q ss_pred             chHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCcccc
Q 011277          324 GLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPV  403 (489)
Q Consensus       324 ~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  403 (489)
                      ++......+...+..++.|++.||+|||+++..+....+++.+.......        ..   ...++.+++ .....|.
T Consensus        41 ~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~~--------~~---~~r~l~G~~-~a~~~pa  108 (393)
T PRK11195         41 PLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGIH--------PL---LAYGLVGIG-AAAYSPA  108 (393)
T ss_pred             HHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHHH--------HH---HHHHHHHHH-HHHHHHH
Confidence            45566677888899999999999999999998887776665544332211        01   111111221 2223466


Q ss_pred             ccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHhhcccCC
Q 011277          404 PSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNVVETK  474 (489)
Q Consensus       404 ~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~et~  474 (489)
                      ...+.+|++|++.|+++.++......++..++|.+.+.+.+.. +...+.+.+.+.++. .+..+.+||.+
T Consensus       109 ~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~-~~~~~~i~~~~~~~~-~~~~~~l~~~~  177 (393)
T PRK11195        109 KYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADPH-AEAALAVCALIYLLA-ALFNLFIPRLG  177 (393)
T ss_pred             HHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH-HHHHhcCCCCc
Confidence            6778999999999999999999998888888998877776643 333343333333323 33345677654

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=98.81  E-value=9.9e-07  Score=82.62  Aligned_cols=110  Identities=21%  Similarity=0.218  Sum_probs=78.7

Q ss_pred             HHHHHHHHhhhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHH
Q 011277           53 VLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGA  132 (489)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~  132 (489)
                      +.+-.+....+........    .+.+++|++.++.  +.+....+....+...+.|.++||+|||+..+...+++++.+
T Consensus        40 l~vY~La~~aDWLQGpY~Y----~LY~~yg~~~~qI--a~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~sc  113 (354)
T PF05631_consen   40 LLVYLLAMAADWLQGPYLY----ALYESYGFSEHQI--AILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSC  113 (354)
T ss_pred             HHHHHHHHHHHHhhcchhH----HHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHH
Confidence            4444555566665554333    2446788865443  344444455556778889999999999999999999998887


Q ss_pred             HHHhhcchHHHHHHHHHHHhhhcccccccccc-ccccc
Q 011277          133 SISATTRNLIGMLLGRFVVGTGMGLGPTVAAL-YVTEV  169 (489)
Q Consensus       133 ~l~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~-~i~e~  169 (489)
                      + .-..+++..++++|++.|++.......--. ++.|.
T Consensus       114 l-~k~~~~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh  150 (354)
T PF05631_consen  114 L-TKHSSNYPVLLLGRVLGGIATSLLFSAFESWMVHEH  150 (354)
T ss_pred             H-HHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5 556789999999999999998877665444 35555

>PRK15075 citrate-proton symporter; Provisional

Probab=98.80  E-value=7.5e-08  Score=96.55  Aligned_cols=134  Identities=19%  Similarity=0.113  Sum_probs=87.7

Q ss_pred             eccchhhhhhh-cCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHH----HhhcchHHHH
Q 011277           70 VNEPLESISLD-LGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASI----SATTRNLIGM  144 (489)
Q Consensus        70 ~~~~~~~i~~~-~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l----~~~~~~~~~l  144 (489)
                      .....|.+.++ +|++.+  +.++....+.++..++.++.|+++||+|||+++..+..+..+...+    ....+++..+
T Consensus       257 ~~~~~p~~l~~~~g~~~~--~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (434)
T PRK15075        257 ITVYTPTFGKTVLHLSAA--DSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPSFARM  334 (434)
T ss_pred             HHHHHHHHHHHhcCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCchHHH
Confidence            34446666654 677644  3466677777888899999999999999999987765444332221    1123344444


Q ss_pred             HHHHHHHhhhcccccccccccccccCCcccchhhhhHH-HHHHHHHHHHHHHhhcccccCCc
Q 011277          145 LLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFI-QIATCLGLMGSLLIGIPVKEIAG  205 (489)
Q Consensus       145 ~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~-~~~~~~G~~~g~~~~~~l~~~~~  205 (489)
                      .+..++.|++.+...+....++.|.+|+++|+...++. +.+..++..++|.+.+.+.+..+
T Consensus       335 ~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g  396 (434)
T PRK15075        335 LAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTG  396 (434)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcC
Confidence            45556666666665555667889999999999999885 44454434445665555555445

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=98.80  E-value=4e-08  Score=99.46  Aligned_cols=144  Identities=19%  Similarity=0.177  Sum_probs=121.9

Q ss_pred             eccchhhhhh-hcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhcchHHHHHHHH
Q 011277           70 VNEPLESISL-DLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGR  148 (489)
Q Consensus        70 ~~~~~~~i~~-~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l~~~R  148 (489)
                      +...+|.+.+ ++|.  +....|++.+.+.+|..+|+++.+.+.+|+++++.+..+.++++++.+..+++++.+...+.-
T Consensus       237 ~~aLlPl~a~~~l~~--~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~l  314 (524)
T PF05977_consen  237 VWALLPLFARDVLGG--GASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWLALIAL  314 (524)
T ss_pred             HHHhhhHHHHHHhCC--cHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence            3345676665 4454  455679999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHH
Q 011277          149 FVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIV  216 (489)
Q Consensus       149 ~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~i  216 (489)
                      ++.|++.........+.+-+..|++.||++++++.+....+..+|..+.+.+.+..|- +..+.++++
T Consensus       315 ~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~-~~al~~a~~  381 (524)
T PF05977_consen  315 FLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGV-RTALLIAGA  381 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCH-HHHHHHHHH
Confidence            9999998888777788889999999999999999999999988888888888777664 666665443

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=98.80  E-value=2.5e-08  Score=98.70  Aligned_cols=134  Identities=13%  Similarity=0.045  Sum_probs=107.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhcchHHHHHHHHHHHhhhcccccccccccccc
Q 011277           89 AEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTE  168 (489)
Q Consensus        89 ~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e  168 (489)
                      ..+...+...+...++.+..|++.||+|||+.+.++.++++++..+...++|.+.+.+.++++|++..........+..|
T Consensus       255 ~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~  334 (396)
T TIGR00882       255 VFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCFKYITS  334 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34677777777778889999999999999999999999888888777888899989999999999876665566667788


Q ss_pred             cCCcccchhhhhH-HHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHHHH
Q 011277          169 VSPPFVRGTYGAF-IQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCL  223 (489)
Q Consensus       169 ~~~~~~Rg~~~~~-~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~i~~~~~~~  223 (489)
                      ..+++.|+...+. ++....+|..+++++++.+.+..| |+..|.+.++..++..+
T Consensus       335 ~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G-~~~~f~~~~~~~~i~~~  389 (396)
T TIGR00882       335 QFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIG-FQGAYLVLGCIVLLFTL  389 (396)
T ss_pred             hCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcc-cHHHHHHHHHHHHHHHH
Confidence            8888888876665 667888898888888888877667 58888876555444433

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=98.79  E-value=6.8e-08  Score=96.96  Aligned_cols=112  Identities=18%  Similarity=0.114  Sum_probs=90.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhc-chHHHHHHHHHHHhhhccccccccccccc
Q 011277           89 AEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATT-RNLIGMLLGRFVVGTGMGLGPTVAALYVT  167 (489)
Q Consensus        89 ~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~-~~~~~l~~~R~l~G~g~g~~~~~~~~~i~  167 (489)
                      ..++..+...++..++.+++++++||+|||+++..+.++.+++.++..+. .+.+.+.+..++.|++.+...+....+++
T Consensus       258 ~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  337 (437)
T TIGR00792       258 LFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWALVA  337 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34566777788889999999999999999999999988888877766654 45666777888999999888888888888


Q ss_pred             ccCC-------cccchhhhhHHHHHHHHHHHHHHHhhccc
Q 011277          168 EVSP-------PFVRGTYGAFIQIATCLGLMGSLLIGIPV  200 (489)
Q Consensus       168 e~~~-------~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l  200 (489)
                      |..+       ++++|...++++....+|..+++.+.+.+
T Consensus       338 ~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~l  377 (437)
T TIGR00792       338 DTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLI  377 (437)
T ss_pred             hhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8875       45678999999988888877776665543

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=98.78  E-value=2.8e-08  Score=92.41  Aligned_cols=112  Identities=15%  Similarity=0.157  Sum_probs=81.2

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccc
Q 011277          323 SGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGP  402 (489)
Q Consensus       323 ~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  402 (489)
                      .|.....+++.+++.+...|.++||+|||+++.++.++..++..+......          +......-+..+..-|.-.
T Consensus        70 aGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~----------F~afv~aR~l~Gi~kgnl~  139 (451)
T KOG2615|consen   70 AGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRN----------FAAFVLARFLGGIFKGNLS  139 (451)
T ss_pred             hhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHhhhhccCchH
Confidence            456677788999999999999999999999999888877775554332211          1111111222222333334


Q ss_pred             cccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011277          403 VPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLE  444 (489)
Q Consensus       403 ~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~  444 (489)
                      +..++++|++++|.|+.+++.......+|..++|++..++..
T Consensus       140 v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~  181 (451)
T KOG2615|consen  140 VIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ  181 (451)
T ss_pred             HHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence            566799999999999999999999999999999998776654

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=98.77  E-value=1.6e-10  Score=116.52  Aligned_cols=154  Identities=17%  Similarity=0.145  Sum_probs=90.8

Q ss_pred             chhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHh----hcch------HH
Q 011277           73 PLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISA----TTRN------LI  142 (489)
Q Consensus        73 ~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~----~~~~------~~  142 (489)
                      ..+.+.++.+.+.+ ..   ......+...++.++...+.||+|||+.++.+..+.+++.+..+    ..++      ..
T Consensus       275 ~~~~i~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (451)
T PF00083_consen  275 YSPSIFENAGISNS-FL---ATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWSIL  350 (451)
T ss_pred             cccccccccccccc-cc---cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            34566666666544 11   11222233345667778999999999999999888887777664    1111      22


Q ss_pred             HHHHHHHH-HhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHH
Q 011277          143 GMLLGRFV-VGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAIL  221 (489)
Q Consensus       143 ~l~~~R~l-~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~i~~~~~  221 (489)
                      .+...... .+++. +..+....+..|.+|.+.|++..++......++..+++.+...+.+..+-+.......++..+..
T Consensus       351 ~i~~~~l~~~~~~~-g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~  429 (451)
T PF00083_consen  351 SIVFLALFFAFFSL-GWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAI  429 (451)
T ss_pred             cceeeeeccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccccccchhhHHHHHHHH
Confidence            22222211 12222 23345667889999999999999988777777766666554444433331122222233334444


Q ss_pred             HHHhhhccCC
Q 011277          222 CLAMVFCAES  231 (489)
Q Consensus       222 ~~~~~~~~Es  231 (489)
                      .+..+++|||
T Consensus       430 i~~~~~lpET  439 (451)
T PF00083_consen  430 IFVYFFLPET  439 (451)
T ss_pred             hheeEEEeeC
Confidence            4556789999

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=98.76  E-value=3.4e-08  Score=93.58  Aligned_cols=173  Identities=14%  Similarity=0.143  Sum_probs=128.0

Q ss_pred             HHHHHHHhhhhccceeeccchhhhhh-hcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHH
Q 011277           54 LVATLSSFLFGYHLGVVNEPLESISL-DLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGA  132 (489)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~  132 (489)
                      .++.-..+.||.+..+.  .-..+.+ ++|++..  +..+..-...+..++|+++.|+|.||+|-|+++..++++..+.+
T Consensus       257 FLiA~~~~~DGv~til~--~~~~fg~~~~gls~~--~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~  332 (438)
T COG2270         257 FLIARFFYIDGVNTILA--MGGVFGAADLGLSST--ELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAA  332 (438)
T ss_pred             HHHHHHHHHhhHHHHHH--HHHHHHHHHcCccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHH
Confidence            33344445566554221  1122444 8888644  44566666777888999999999999999999999999999988


Q ss_pred             HHHhhcchHHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHH
Q 011277          133 SISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFW  212 (489)
Q Consensus       133 ~l~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~  212 (489)
                      +..-+...-..+.++-.+.|.+.|+..+.+..|.++..|+++-+++.++|++..-.+...||..-..+.+..+.-|.-+.
T Consensus       333 ~~~~~~~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~  412 (438)
T COG2270         333 LYLIFLEGELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVL  412 (438)
T ss_pred             HHHHHccccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHH
Confidence            88877777777788889999999999999999999999999999999999999888888888876665555444576665


Q ss_pred             HHHHHHHHHHHHhhhccC
Q 011277          213 VSIVPAAILCLAMVFCAE  230 (489)
Q Consensus       213 ~~~i~~~~~~~~~~~~~E  230 (489)
                      ...+...+-++....+|+
T Consensus       413 ~i~vll~iGl~~L~~v~~  430 (438)
T COG2270         413 SIIVLLLIGLLLLLRVKV  430 (438)
T ss_pred             HHHHHHHhhHhhEEeecC
Confidence            433333333333444444

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=98.75  E-value=3.3e-07  Score=92.83  Aligned_cols=120  Identities=13%  Similarity=0.081  Sum_probs=82.8

Q ss_pred             HHHHHHHHHHHHHHHhhh-cCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccc
Q 011277          330 VGIANLLGSVVAMVLMDK-LGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLL  408 (489)
Q Consensus       330 ~~i~~~~g~~~~g~l~dr-~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (489)
                      ......+..+++|+++|| +|||+++..+.....++.+........     ..  .......+..++ .....|....+.
T Consensus        59 ~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~-----~~--ll~~~~~l~~ig-~g~~~~~~~~li  130 (489)
T PRK10207         59 FAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLK-----PD--LIFIALGTIAVG-NGLFKANPASLL  130 (489)
T ss_pred             HHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhccc-----hh--HHHHHHHHHHhc-cccccCCHHHHH
Confidence            334445556789999999 999999999988888877665433210     11  111112222221 112345666789


Q ss_pred             cccCCch--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHH
Q 011277          409 PEIFPSR--IRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGT  457 (489)
Q Consensus       409 ~e~~p~~--~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~  457 (489)
                      .|.||++  .|+++.++.....++++.++|.+.+.+.+..||++.|.+.++
T Consensus       131 ~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i  181 (489)
T PRK10207        131 SKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGA  181 (489)
T ss_pred             HHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHH
Confidence            9999887  457789999999999999999988888888898888877544

>PRK11043 putative transporter; Provisional

Probab=98.75  E-value=3.2e-07  Score=91.00  Aligned_cols=145  Identities=17%  Similarity=0.131  Sum_probs=94.9

Q ss_pred             HHHhcCCCc---chHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHH
Q 011277          315 VFKSAGLSS---GLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLM  391 (489)
Q Consensus       315 ~~~~~~~~~---~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  391 (489)
                      +.++.+.+.   ++......++..++.++.|+++||+|||+.+..+.....++..+.....     + ...  ......+
T Consensus        32 i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~-----~-~~~--l~~~~~l  103 (401)
T PRK11043         32 IQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVE-----S-AAQ--LLVLRFV  103 (401)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhc-----C-HHH--HHHHHHH
Confidence            444445443   4556667788889999999999999999998877766665554433221     1 111  1111122


Q ss_pred             HHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHh
Q 011277          392 FVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKR  468 (489)
Q Consensus       392 ~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~  468 (489)
                      .+++.+ ...+....+..|.+|++.|+...+.......++..++|.+...+.+..++...+.+.+.+.++..+....
T Consensus       104 ~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~  179 (401)
T PRK11043        104 QAVGVC-SAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTLR  179 (401)
T ss_pred             HHhhhH-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHH
Confidence            222111 1122334567899999999999998888888888888888887778888888887777766665554433

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=98.74  E-value=1.9e-07  Score=94.50  Aligned_cols=130  Identities=12%  Similarity=0.053  Sum_probs=92.2

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHhhh-cCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcC-c
Q 011277          323 SGLANVFVGIANLLGSVVAMVLMDK-LGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALG-A  400 (489)
Q Consensus       323 ~~~~~~~~~i~~~~g~~~~g~l~dr-~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  400 (489)
                      .+.......++..++.+++|+++|| +|||+++..+.....++..+.....     .   .+.......+.  +.+.| .
T Consensus        50 ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~~-----~---~~~~~~~~~l~--g~g~g~~  119 (475)
T TIGR00924        50 AFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMSI-----Y---PDLIFYGLGTI--AVGSGLF  119 (475)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhcc-----c---HhHHHHHHHHH--Hhccccc
Confidence            3456666778888999999999999 8999999888887777665543221     1   11111112222  22222 3


Q ss_pred             cccccccccccCCchh---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHH
Q 011277          401 GPVPSLLLPEIFPSRI---RAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMA  462 (489)
Q Consensus       401 ~~~~~~~~~e~~p~~~---r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~  462 (489)
                      .|....+.+|.+|++.   |+++.++.....++++.+++.+.+.+.+..++.+.|.+.++.++++
T Consensus       120 ~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~  184 (475)
T TIGR00924       120 KANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIG  184 (475)
T ss_pred             cCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence            4566668889998754   8999999999999999999999888888888888887766554444

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=98.73  E-value=7e-08  Score=89.29  Aligned_cols=99  Identities=22%  Similarity=0.212  Sum_probs=79.9

Q ss_pred             HHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhcchHHHHHHHHHHHhhhcccccccccccccccCCcccchhhh
Q 011277          100 GAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYG  179 (489)
Q Consensus       100 g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~  179 (489)
                      .-.-|.++.+.+.||+|||+++..+.++++++.++...+++-....+.-+..-+...+.+.+.+.|.-|++|...|+...
T Consensus       393 aefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYvYtPEVyPTavRatgv  472 (528)
T KOG0253|consen  393 AEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVRATGV  472 (528)
T ss_pred             hhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEEecCcccchhhhhcch
Confidence            33468899999999999999999999999999998877665444333333333444555667889999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHhhc
Q 011277          180 AFIQIATCLGLMGSLLIGI  198 (489)
Q Consensus       180 ~~~~~~~~~G~~~g~~~~~  198 (489)
                      +.-....-+|.++.|+++.
T Consensus       473 GtcSsmaRIggI~~p~iA~  491 (528)
T KOG0253|consen  473 GTCSSMARIGGIFSPVIAM  491 (528)
T ss_pred             hhhhhHHhhhhhhhhHHHH
Confidence            9999999999999998873

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=98.70  E-value=7.4e-07  Score=90.73  Aligned_cols=116  Identities=19%  Similarity=0.117  Sum_probs=76.6

Q ss_pred             HHHHHHHHHhhh-cCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCc
Q 011277          336 LGSVVAMVLMDK-LGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPS  414 (489)
Q Consensus       336 ~g~~~~g~l~dr-~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~  414 (489)
                      ...+++|+++|| +|||+.+..+.....++..+.....     ... . .......+.+++.+. ..|....+..|.+|+
T Consensus        72 ~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~-----~~~-~-~l~~~~~l~gig~g~-~~~~~~~l~~~~f~~  143 (500)
T PRK09584         72 GLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSG-----HDA-G-IVYMGMATIAVGNGL-FKANPSSLLSTCYEK  143 (500)
T ss_pred             HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhc-----ccH-H-HHHHHHHHHHHhhhc-ccCCHHHHHHHhcCC
Confidence            334678999999 5999999888877776655443221     111 1 111122222222221 235555688999986


Q ss_pred             hh--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHH
Q 011277          415 RI--RAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFC  459 (489)
Q Consensus       415 ~~--r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~  459 (489)
                      +.  |..+.++.+...++++.++|.+.+.+.+..|+.+.|.+.++..
T Consensus       144 ~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~  190 (500)
T PRK09584        144 DDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGM  190 (500)
T ss_pred             CchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHH
Confidence            43  4567888888899999999999888888889988887766433

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=98.69  E-value=1.8e-07  Score=94.69  Aligned_cols=143  Identities=15%  Similarity=0.062  Sum_probs=98.3

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccc
Q 011277          323 SGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGP  402 (489)
Q Consensus       323 ~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  402 (489)
                      .|.......++..++.+++|++.||+|||+.+..+.+...++..+.......   .   .+..+..-++.+++. ....|
T Consensus        78 ~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~---~---~~~l~~~r~~~G~~~-~~~~~  150 (465)
T TIGR00894        78 QGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGG---G---IALVVFCRVIQGLAQ-GSVSP  150 (465)
T ss_pred             hhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHc---C---chHHHHHHHHHHHhc-ccchh
Confidence            3556667778889999999999999999998887776655554443222110   0   111111111222221 12345


Q ss_pred             cccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCchhhHHHHHHHHHHHHHHHhhccc
Q 011277          403 VPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQ-LGPQLLYSIFGTFCLMAVAFVKRNVVE  472 (489)
Q Consensus       403 ~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~e  472 (489)
                      ....+.+|.+|++.|+++.++......++..+++.+...+.+. .++...|.+.+++.++..+..+...+|
T Consensus       151 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~  221 (465)
T TIGR00894       151 ATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPAD  221 (465)
T ss_pred             hHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcC
Confidence            6667899999999999999999999999999999888877777 488888888888776665555444444

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.67  E-value=2e-05  Score=77.31  Aligned_cols=102  Identities=14%  Similarity=-0.051  Sum_probs=86.0

Q ss_pred             HHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhcchHHHHHHHHHHHhhhcccccccccccccccCCcc
Q 011277           94 VSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPF  173 (489)
Q Consensus        94 ~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~  173 (489)
                      .++....+.+..++.+++.|+.|.|..+.++..++....... +-.|-+-+.+.-.+.|+|.+..+.....|++|.+++|
T Consensus        56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gf-l~~N~y~~yfssallG~Gaallw~GqG~ylt~~st~~  134 (461)
T KOG3098|consen   56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGF-LFPNSYYLYFSSALLGFGAALLWTGQGGYLTSNSTRE  134 (461)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHH-HhcchHHHHHHHHHhhhhHHheecccceehhhcCChh
Confidence            666677778999999999999999999999999988766544 3456666888999999999999999999999999999


Q ss_pred             cchhhhhHHHHHHHHHHHHHHHh
Q 011277          174 VRGTYGAFIQIATCLGLMGSLLI  196 (489)
Q Consensus       174 ~Rg~~~~~~~~~~~~G~~~g~~~  196 (489)
                      .+.+..++.-.....+.++|.++
T Consensus       135 tie~Nisi~Wai~~~~li~Ggi~  157 (461)
T KOG3098|consen  135 TIERNISIFWAIGQSSLIIGGII  157 (461)
T ss_pred             hHHHHHHHHHHHHHHHHHhhhHh
Confidence            99999988877777776666544

>TIGR00896 CynX cyanate transporter

Probab=98.67  E-value=9.6e-08  Score=93.07  Aligned_cols=134  Identities=17%  Similarity=0.075  Sum_probs=96.9

Q ss_pred             cchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhc-hhhHHHHHhHHHHHHHHHHHhhcchHHHHHHHHHH
Q 011277           72 EPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGV-GRRRAFQLCALPMIIGASISATTRNLIGMLLGRFV  150 (489)
Q Consensus        72 ~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~-GRr~~~~~~~~~~~i~~~l~~~~~~~~~l~~~R~l  150 (489)
                      ..+|.+.+|.|.+  ..+.+...+.+.++..++.++.|+++||+ +||+.+..+.++.+++.++.....+..... .-.+
T Consensus       218 ~~lp~~~~~~g~~--~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l  294 (355)
T TIGR00896       218 GWLPAILISHGAS--AATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMHGLWA-WALV  294 (355)
T ss_pred             HHHHHHHHHcCCC--HHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHH-HHHH
Confidence            3567777787765  34567888899999999999999999999 567777777777777776666655433322 4567


Q ss_pred             HhhhcccccccccccccccCC-cccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhH
Q 011277          151 VGTGMGLGPTVAALYVTEVSP-PFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWR  208 (489)
Q Consensus       151 ~G~g~g~~~~~~~~~i~e~~~-~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr  208 (489)
                      .|++.|...+.....+.+..+ +++++...++.+....+|..++|.+.+.+.++.+.|.
T Consensus       295 ~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g~~~  353 (355)
T TIGR00896       295 LGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISGNWL  353 (355)
T ss_pred             HHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence            899998888776666665554 5667888888777777777777877766666555443

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PTZ00207 hypothetical protein; Provisional

Probab=98.66  E-value=3.3e-06  Score=86.17  Aligned_cols=152  Identities=14%  Similarity=0.132  Sum_probs=86.9

Q ss_pred             HHhHHHHHHhcCCCcchHHHHHHHHHH--HHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHH
Q 011277          309 FYFSSSVFKSAGLSSGLANVFVGIANL--LGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSV  386 (489)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~i~~~--~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  386 (489)
                      ..+.+.+.+..+.+.........++..  ...+..|++.||+|+|+++.++.+...++.++............... +.+
T Consensus        47 sv~s~~L~~~lgls~~~l~~i~svg~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~-l~l  125 (591)
T PTZ00207         47 NLISGAMQARYNLTQRDLSTITTVGIAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVR-LSV  125 (591)
T ss_pred             HHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHH-HHH
Confidence            345566666677665433333333333  34456899999999999999998888888776655422111111111 111


Q ss_pred             HHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHH
Q 011277          387 GGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAF  465 (489)
Q Consensus       387 ~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~  465 (489)
                       ...+.+.+.+. ..+.....+.+.|| +.|+++.|+......+++.+.+.+...+.. .++...+.+.+++.++..+.
T Consensus       126 -~r~l~G~G~~~-~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~-~~~~~~fl~l~vl~~vv~ll  200 (591)
T PTZ00207        126 -YNGLMTLGCML-FDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS-DNTSAYFFFLMSFALVVGIL  200 (591)
T ss_pred             -HHHHHHHHHHH-HHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHH
Confidence             11111111111 11222335678887 789999999999999988766655544433 23445566666655554443

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=98.66  E-value=6.9e-07  Score=100.79  Aligned_cols=142  Identities=14%  Similarity=0.098  Sum_probs=87.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccc
Q 011277          325 LANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVP  404 (489)
Q Consensus       325 ~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  404 (489)
                      +......+..++.++++|+++||+|||+++........+..........  . ..  .+..+...++.+++ .....|..
T Consensus        56 l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~--~-~s--~~~l~~~~~l~gi~-~a~~~p~~  129 (1140)
T PRK06814         56 LAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFH--L-NS--VPLLFAALFLMGIH-SALFGPIK  129 (1140)
T ss_pred             HHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHH--H-hh--HHHHHHHHHHHHHH-HHhhchHH
Confidence            3445566777888999999999999999754322221111111111110  0 11  11112222222222 22345777


Q ss_pred             cccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHhhcccC
Q 011277          405 SLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNVVET  473 (489)
Q Consensus       405 ~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~et  473 (489)
                      ..++.|++|++.|+.++|+.++...++..++|.+.+.+....++...|...+.+.++. +++...+||+
T Consensus       130 ~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  197 (1140)
T PRK06814        130 YSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALLMGIAVLG-WLASLFIPKT  197 (1140)
T ss_pred             HHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH-HHHHhhCCCC
Confidence            8899999999999999999999999999999999888888777777663333333333 3333445554

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=98.66  E-value=1.3e-06  Score=86.59  Aligned_cols=155  Identities=11%  Similarity=0.022  Sum_probs=89.0

Q ss_pred             chHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCcccc
Q 011277          324 GLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPV  403 (489)
Q Consensus       324 ~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  403 (489)
                      ++......++..++.+..|++.||+|.|++...+.+...+..........+.. +.....+.+  -.+.++  +.+..+.
T Consensus        73 g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~~-~s~~~lli~--r~l~Gi--gg~~f~~  147 (462)
T PRK15034         73 FLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNPN-TPFGIFIVI--ALLCGF--AGANFAS  147 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHcccC-CCHHHHHHH--HHHHHH--HHHhHHH
Confidence            34444455666677778899999999999888887776666655443321111 111111111  111111  1122234


Q ss_pred             ccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHH-----HHhC-------------CchhhHHHHHHHHHHHHH
Q 011277          404 PSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLL-----EQLG-------------PQLLYSIFGTFCLMAVAF  465 (489)
Q Consensus       404 ~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~-----~~~g-------------~~~~~~~~~~~~~~~~~~  465 (489)
                      ....+++.||+++|+++.|+....++++..+.+.+.+.+.     ...|             +..+..++..+.++..++
T Consensus       148 ~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~  227 (462)
T PRK15034        148 SMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIA  227 (462)
T ss_pred             HHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHH
Confidence            4457889999999999999998888888877766654432     2222             233334555555555444


Q ss_pred             HHhhcccC--CCCCHHHHHH
Q 011277          466 VKRNVVET--KGKSLQEIEI  483 (489)
Q Consensus       466 ~~~~~~et--~~~~~~e~~~  483 (489)
                      .++.+++.  ++.+++|.-.
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~  247 (462)
T PRK15034        228 AWSGMNDIASSRASIADQLP  247 (462)
T ss_pred             HHHhCCCccccccCHHHHHH
Confidence            44444443  3445555433

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=98.65  E-value=2.5e-07  Score=87.54  Aligned_cols=154  Identities=29%  Similarity=0.413  Sum_probs=116.3

Q ss_pred             hhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhcch-
Q 011277           62 LFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRN-  140 (489)
Q Consensus        62 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~-  140 (489)
                      ....+........+.+..+++.+......++..+.+.++..+++++.|.++||+|||+.+..+.....++.++.++..+ 
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~   92 (338)
T COG0477          13 LLGLDLGLLSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNV   92 (338)
T ss_pred             HHHHhcchHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccc
Confidence            3335555566667777777654421024578899999999999999999999999998888888776666777777766 


Q ss_pred             -HHHHHHHHHHHhhhcccccccccccccccCCc-ccchhhhhHHHH-HHHHHHHHHHHhhcccccC--CchhHHHHHHHH
Q 011277          141 -LIGMLLGRFVVGTGMGLGPTVAALYVTEVSPP-FVRGTYGAFIQI-ATCLGLMGSLLIGIPVKEI--AGWWRICFWVSI  215 (489)
Q Consensus       141 -~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~-~~Rg~~~~~~~~-~~~~G~~~g~~~~~~l~~~--~~~wr~~f~~~~  215 (489)
                       ...+++.|+++|++.|...+....++.|+.|+ ++|+...+.... ...+|...++.++..+...  .+ ||+.|....
T Consensus        93 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  171 (338)
T COG0477          93 GLALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWG-WRAAFLLAA  171 (338)
T ss_pred             hHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hHHHHHHHH
Confidence             88899999999999999999999999999998 678888888777 5777777777665443322  23 788666543


Q ss_pred             H
Q 011277          216 V  216 (489)
Q Consensus       216 i  216 (489)
                      .
T Consensus       172 ~  172 (338)
T COG0477         172 L  172 (338)
T ss_pred             H
Confidence            3

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=98.65  E-value=1e-06  Score=87.42  Aligned_cols=155  Identities=14%  Similarity=0.130  Sum_probs=99.4

Q ss_pred             HHHHHhcCCC---cchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHH
Q 011277          313 SSVFKSAGLS---SGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGM  389 (489)
Q Consensus       313 ~~~~~~~~~~---~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (489)
                      +...++.+.+   .++......++.+++++..+++.||+|||+.+..+..+.+++..+......   ......  .+...
T Consensus        27 ~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~---~~~~~~--~l~~~  101 (410)
T TIGR00885        27 PQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAE---IMNYTL--FLVGL  101 (410)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHh---hccHHH--HHHHH
Confidence            4444444544   456777888999999999999999999999999988887777655432211   011111  11112


Q ss_pred             HHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------
Q 011277          390 LMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQ------------------------  445 (489)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~------------------------  445 (489)
                      ++.+.+.+.. .+....+..|+.|++.|++..++.+....++..+++.+...+...                        
T Consensus       102 ~l~G~g~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (410)
T TIGR00885       102 FILTAGLGFL-ETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHS  180 (410)
T ss_pred             HHHHhhHHHH-HhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHH
Confidence            2222222211 122234677888999999999999999999999998877665421                        


Q ss_pred             --hCCchhhHHHHHHHHHHHHHH-HhhcccC
Q 011277          446 --LGPQLLYSIFGTFCLMAVAFV-KRNVVET  473 (489)
Q Consensus       446 --~g~~~~~~~~~~~~~~~~~~~-~~~~~et  473 (489)
                        .++++.|.+.+++.++..++. ....||.
T Consensus       181 ~~~~w~~~fl~~a~~~~~~~~~~~~~~~p~~  211 (410)
T TIGR00885       181 DLASVQTPYMIIGAVVLAVALLIMLTKMPAL  211 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence              246677877777665554433 2346663

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK11010 ampG muropeptide transporter; Validated

Probab=98.65  E-value=2.6e-07  Score=93.90  Aligned_cols=152  Identities=18%  Similarity=0.229  Sum_probs=101.6

Q ss_pred             hhhhhcCCCCchhHHHHHH-HHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHH---hhc-chHHHHHHHHHH
Q 011277           76 SISLDLGFNGNTLAEGLVV-SMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASIS---ATT-RNLIGMLLGRFV  150 (489)
Q Consensus        76 ~i~~~~~~~~~~~~~~~~~-s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~---~~~-~~~~~l~~~R~l  150 (489)
                      .+.+++|++.+  +.++.. ....++..+|.++.|+++||+|||+.+..+.++..++..+.   +.. ++...+.+.-++
T Consensus       248 ~l~~~~G~s~~--~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~l  325 (491)
T PRK11010        248 FLIRGVGFDAG--EVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAVFF  325 (491)
T ss_pred             HHHHhcCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence            34456777644  456665 45567889999999999999999998876666555443322   222 355444545566


Q ss_pred             HhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHHHHHhhhccC
Q 011277          151 VGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAE  230 (489)
Q Consensus       151 ~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~i~~~~~~~~~~~~~E  230 (489)
                      +.+..|...+....+..|..+++.+++..++.+....+|..+++.+.+.+.+..| |+..|.+..+..+...+....+++
T Consensus       326 ~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G-~~~~f~~~~~~~l~~l~~~~~~~~  404 (491)
T PRK11010        326 ENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHG-WPTFYLFSVAAAVPGLLLLLVCRQ  404 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHHHHHHHHh
Confidence            5554454445556788899999999999999988888886655555556666566 688888766555555444444443

>TIGR00901 2A0125 AmpG-related permease

Probab=98.64  E-value=1.4e-07  Score=91.92  Aligned_cols=116  Identities=19%  Similarity=0.211  Sum_probs=89.4

Q ss_pred             eccchhhhhhhcCCCCchhHHHHHHHHHH-HHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhc----------
Q 011277           70 VNEPLESISLDLGFNGNTLAEGLVVSMCL-GGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATT----------  138 (489)
Q Consensus        70 ~~~~~~~i~~~~~~~~~~~~~~~~~s~~~-~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~----------  138 (489)
                      .....|.+.+++|++.+  +.+...+... ++..+|.+++|++.||+|||+.+..+.++..++..+....          
T Consensus       228 ~~~~~~~~l~~~g~~~~--~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (356)
T TIGR00901       228 ATVLTTLFLLDMGFSKE--EIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHDGIT  305 (356)
T ss_pred             HHHHHHHHHHHcCCCHH--HHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccc
Confidence            34455666677776543  4455555433 5677999999999999999999988888877766654432          


Q ss_pred             -chHHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHH
Q 011277          139 -RNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATC  187 (489)
Q Consensus       139 -~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~  187 (489)
                       ++.+.+..+.++.+++.+...+....++.|.+|+++||+..++++...+
T Consensus       306 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~  355 (356)
T TIGR00901       306 FPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA  355 (356)
T ss_pred             cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence             3456677889999999999999999999999999999999998876543

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=98.63  E-value=2.6e-07  Score=91.30  Aligned_cols=144  Identities=15%  Similarity=0.004  Sum_probs=100.4

Q ss_pred             hhhhhhhcCCCCchhHHHHHHHHHH-HHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhh------cchHHHHHH
Q 011277           74 LESISLDLGFNGNTLAEGLVVSMCL-GGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISAT------TRNLIGMLL  146 (489)
Q Consensus        74 ~~~i~~~~~~~~~~~~~~~~~s~~~-~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~------~~~~~~l~~  146 (489)
                      .+.+.+|.|++.+  +.++...... .+..+|.++.|++.||+|+|+.+..+.++..+.......      ..+...+..
T Consensus       231 ~~~~l~~~G~s~~--~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (390)
T TIGR02718       231 SKLYLVDAGWPLE--WIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWS  308 (390)
T ss_pred             hhHHHHhcCCCHH--HHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHH
Confidence            3455677777654  4466665553 466788999999999999999998877665333322211      233444455


Q ss_pred             HHHHHhhhcccccccccccccccCCc-ccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHH
Q 011277          147 GRFVVGTGMGLGPTVAALYVTEVSPP-FVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAI  220 (489)
Q Consensus       147 ~R~l~G~g~g~~~~~~~~~i~e~~~~-~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~i~~~~  220 (489)
                      .-.+++++.|...+.....+.+..++ +++|+..++++....+|..+++.+++.+.+..| ++..|+......++
T Consensus       309 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G-~~~~f~~~~~~~l~  382 (390)
T TIGR02718       309 CSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFG-YAGGFLSGTVLAVL  382 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cHHHHHHHHHHHHH
Confidence            55666666676666666676677766 889999999999999999999999888777666 57888765444433

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=98.62  E-value=1.9e-07  Score=94.11  Aligned_cols=173  Identities=15%  Similarity=0.169  Sum_probs=138.3

Q ss_pred             HHHHHHhhhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhch--hhHHHHHhHHHHHHHH
Q 011277           55 VATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVG--RRRAFQLCALPMIIGA  132 (489)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~G--Rr~~~~~~~~~~~i~~  132 (489)
                      ...++..+...........+|...++.+.+.+  +.....+...+...+|-++.|+++|+..  ++.++.++++..+++.
T Consensus       302 ~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~--~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~  379 (509)
T KOG2504|consen  302 LLALSNLFAYLGFNVPFVYLPSYAKSLGLSSN--DAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLAR  379 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcCCChh--hhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHH
Confidence            33444444444444455667888888777644  4568899999999999999999999988  6777788888888889


Q ss_pred             HHHhhcchHHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHH
Q 011277          133 SISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFW  212 (489)
Q Consensus       133 ~l~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~  212 (489)
                      ..+.++++++.+...-.+.|+..|........++.|+.+.++-..+.++..+...++.+.||.+.+.+.+..+.|...|+
T Consensus       380 ~~~p~~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~  459 (509)
T KOG2504|consen  380 LFLPFATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFY  459 (509)
T ss_pred             HHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehh
Confidence            99999999999999999999999999888888999999999999999999999999999888888887777665677787


Q ss_pred             HHHHHHHHHHHHhhhcc
Q 011277          213 VSIVPAAILCLAMVFCA  229 (489)
Q Consensus       213 ~~~i~~~~~~~~~~~~~  229 (489)
                      .+.+..++....++..+
T Consensus       460 ~~g~~~~~s~~~~~~~~  476 (509)
T KOG2504|consen  460 FCGLCFLLSAVLLLILR  476 (509)
T ss_pred             hcChHHHHHHHHHHHhH
Confidence            76555555444444433

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=98.62  E-value=2.2e-07  Score=104.95  Aligned_cols=128  Identities=18%  Similarity=0.142  Sum_probs=106.3

Q ss_pred             chhhh-hhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhcchHHHHHHHHHHH
Q 011277           73 PLESI-SLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVV  151 (489)
Q Consensus        73 ~~~~i-~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l~~~R~l~  151 (489)
                      .+|.+ .+++|.+.. ...+++.+...+|..+|+++.|+++||+++|+++.++.++.+++.++.....+.+.+++.-++.
T Consensus       254 ~~~~~~~~~~g~s~~-~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (1146)
T PRK08633        254 NFPAYAKEVLGLDNT-FQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVLFFLF  332 (1146)
T ss_pred             hhHHHHHHHhCCCcH-HHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            34433 455676543 1457888889999999999999999999999999888888888888888888888888889999


Q ss_pred             hhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccc
Q 011277          152 GTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVK  201 (489)
Q Consensus       152 G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~  201 (489)
                      |++.+...+....++.+..|+++||++.+++++...+|..+++.++..+.
T Consensus       333 g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~  382 (1146)
T PRK08633        333 GFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFS  382 (1146)
T ss_pred             HHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999888888889999999999999999999888888877777665443

>PRK09848 glucuronide transporter; Provisional

Probab=98.59  E-value=5.7e-07  Score=90.60  Aligned_cols=108  Identities=18%  Similarity=0.102  Sum_probs=84.9

Q ss_pred             HHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhcc--hHHHHHHHHHHHhhhcccccccccccccc
Q 011277           91 GLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTR--NLIGMLLGRFVVGTGMGLGPTVAALYVTE  168 (489)
Q Consensus        91 ~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~--~~~~l~~~R~l~G~g~g~~~~~~~~~i~e  168 (489)
                      ++......++..++.++.++++||+|+|+++..+.++..++.++..+.+  +++.+.+.-++.|+|.+...+...+..+|
T Consensus       267 ~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~  346 (448)
T PRK09848        267 VLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVTMTVMWALEAD  346 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333434566778999999999999999999999988888777766643  56667777889999999988888888899


Q ss_pred             cCCcc-------cchhhhhHHHHHHHHHHHHHHHhhc
Q 011277          169 VSPPF-------VRGTYGAFIQIATCLGLMGSLLIGI  198 (489)
Q Consensus       169 ~~~~~-------~Rg~~~~~~~~~~~~G~~~g~~~~~  198 (489)
                      ..|.+       ++|...+.+++...+|..+|+.+.+
T Consensus       347 ~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g  383 (448)
T PRK09848        347 TVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPA  383 (448)
T ss_pred             hhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            98765       3588888998888888776665543

>TIGR01272 gluP glucose/galactose transporter

Probab=98.58  E-value=6.1e-07  Score=85.34  Aligned_cols=137  Identities=12%  Similarity=0.106  Sum_probs=97.3

Q ss_pred             ccchhhhhhh---cCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhcchHHHHHHH
Q 011277           71 NEPLESISLD---LGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLG  147 (489)
Q Consensus        71 ~~~~~~i~~~---~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l~~~  147 (489)
                      +...+.+.+|   +|++  +.+.++..+.+..++.+|.++.++++||+|+|+.+..+.++.+++.++....++... ..+
T Consensus       160 ~~w~~~yl~~~~~~g~s--~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~~~~-~~~  236 (310)
T TIGR01272       160 GSFLVNFLSDPHALGLP--EDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHGYVA-MWF  236 (310)
T ss_pred             HHHHHHHHHhcccCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCHHH-HHH
Confidence            3344555543   3554  445678899999999999999999999999999998888888777766655554332 334


Q ss_pred             HHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHH
Q 011277          148 RFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWV  213 (489)
Q Consensus       148 R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~  213 (489)
                      =++.|++.+..+|.......+..|++ .+.+.++... ..+|..+.|.+-+.+.+..+ .+..|++
T Consensus       237 ~~l~g~~~s~i~P~~~s~a~~~~~~~-~~~asai~~~-~~~Gg~i~P~l~G~lad~~g-~~~a~~v  299 (310)
T TIGR01272       237 VLALGLFNSIMFPTIFSLALNALGRH-TSQGSGILCL-AIVGGAIVPLLQGSLADCLG-IQLAFAL  299 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhh-hhhhHHHHHH-HHhcchHHHHHHHHHHHhcc-chHHHHH
Confidence            55889999999999888888887765 4566666544 44666666665555655555 4677664

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=98.58  E-value=3.3e-08  Score=94.50  Aligned_cols=159  Identities=12%  Similarity=0.073  Sum_probs=110.3

Q ss_pred             HHhcCCCcchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHH
Q 011277          316 FKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLT  395 (489)
Q Consensus       316 ~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  395 (489)
                      ++......|+......+...+.+++.|++.||+.||+++..|..+-.++.++..... .       .|.....-.+.+++
T Consensus        63 fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs~-~-------Fwq~~l~R~~vGiG  134 (493)
T KOG1330|consen   63 FNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFSN-H-------FWQVLLCRGFVGIG  134 (493)
T ss_pred             cCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHHH-H-------HHHHHHHHHHhccc
Confidence            333444567888888999999999999999999999999888777666665543321 1       11111111111111


Q ss_pred             HhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CchhhHHHHHHHHHHHHHHHhhcccCC
Q 011277          396 FALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLG-PQLLYSIFGTFCLMAVAFVKRNVVETK  474 (489)
Q Consensus       396 ~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~et~  474 (489)
                       -.+..|+...+++|+||...|++..++.+....+|..++-.....+-+..+ |++.|.+.+++.++..+++..+++|..
T Consensus       135 -eAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~eP~  213 (493)
T KOG1330|consen  135 -EASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVREPE  213 (493)
T ss_pred             -hhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhccCcc
Confidence             123457777789999999999999999998888776655544333333334 788898889888888888877888877


Q ss_pred             CCCHHHHHH
Q 011277          475 GKSLQEIEI  483 (489)
Q Consensus       475 ~~~~~e~~~  483 (489)
                      ++..+|.++
T Consensus       214 rga~~~~~~  222 (493)
T KOG1330|consen  214 RGARDEVDG  222 (493)
T ss_pred             ccccccccc
Confidence            655566554

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=98.54  E-value=3.1e-06  Score=86.75  Aligned_cols=157  Identities=19%  Similarity=0.131  Sum_probs=92.5

Q ss_pred             eccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhcchH--------
Q 011277           70 VNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNL--------  141 (489)
Q Consensus        70 ~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~--------  141 (489)
                      .....+++.+..+.+.+.   .+.......-..++..+...+.||+|||+.++.+...+.++.++.+.....        
T Consensus       314 ~~~Y~~~if~~~g~~~~~---~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~  390 (513)
T KOG0254|consen  314 VFYYSTTIFKSAGLKSDT---FLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYPNSS  390 (513)
T ss_pred             EEeehHHHHHhcCCCCch---HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCCCcc
Confidence            344456677777776543   123333444445677778999999999999999999999998887643111        


Q ss_pred             ---H--HHH-HHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHH-HH
Q 011277          142 ---I--GML-LGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFW-VS  214 (489)
Q Consensus       142 ---~--~l~-~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~-~~  214 (489)
                         .  .+. ..-++..+.. +..++...+.+|.+|.+.|++..++......+....-...........+ +...|. ..
T Consensus       391 ~~~~~~~~~~~~~~v~~f~~-g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~-~~~~f~~f~  468 (513)
T KOG0254|consen  391 KGAGWLAIVFLCLFIFSFAI-GWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEALG-IGGTFGYFG  468 (513)
T ss_pred             cchhHHHHHHHHHHHHHHhc-ccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccchHHHHH
Confidence               1  112 2233333333 3334555788999999999999888766555553322222112211111 122332 23


Q ss_pred             HHHHHHHH-HHhhhccCC
Q 011277          215 IVPAAILC-LAMVFCAES  231 (489)
Q Consensus       215 ~i~~~~~~-~~~~~~~Es  231 (489)
                      ++..+... +..+++|||
T Consensus       469 ~~~~~~~~~fv~~~~pET  486 (513)
T KOG0254|consen  469 GICLLSLIIFVFFFVPET  486 (513)
T ss_pred             HHHHHHHHHHheEEcccC
Confidence            33333333 566788998

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=98.52  E-value=1.8e-06  Score=78.06  Aligned_cols=153  Identities=17%  Similarity=0.179  Sum_probs=104.3

Q ss_pred             ccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhc-------chHHH
Q 011277           71 NEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATT-------RNLIG  143 (489)
Q Consensus        71 ~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~-------~~~~~  143 (489)
                      +..-|++.+.+|+++++.  ..+...-.+|..+| ++.|.+.|++|+|.++.++.+...+|-.+...+       .+++.
T Consensus        22 s~yS~~Lk~~l~~sq~~l--~~l~~~~~~G~~~G-~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~   98 (250)
T PF06813_consen   22 SAYSPQLKSRLGYSQSQL--NTLSTAGDIGSYFG-ILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWL   98 (250)
T ss_pred             hhhhHHHHHHhCCCHHHH--HHHHHHHHHHhhcc-HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchHH
Confidence            334567888999876654  46677777887775 888999999999999999999888887665432       46778


Q ss_pred             HHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHH-HHHhhcccccCCchhHHHHHHHHHHHHHHH
Q 011277          144 MLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMG-SLLIGIPVKEIAGWWRICFWVSIVPAAILC  222 (489)
Q Consensus       144 l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~-g~~~~~~l~~~~~~wr~~f~~~~i~~~~~~  222 (489)
                      +.+..++.|.+.+.....+.....+.||. +||++.++.-....++..+ ..+......+ +. -+..+.+...+.++.+
T Consensus        99 ~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~RG~vvgilk~~~GLSaai~t~i~~~~f~~-~~-~~fll~la~~~~~v~l  175 (250)
T PF06813_consen   99 MCLFLFLGGNSSCWFNTASLVTCVRNFPR-SRGTVVGILKGFFGLSAAIFTQIYSAFFGD-DP-SSFLLFLAVLPAVVCL  175 (250)
T ss_pred             HHHHHHHHcccHHHhhhHHHHHHHHhCcc-ccCceehhhhHHHHhHHHHHHHHHHHHcCC-Ch-HHHHHHHHHHHHHHHH
Confidence            88888888887666555555666788875 6999999987777776433 3333322222 22 2455555555555554


Q ss_pred             HHhhhcc
Q 011277          223 LAMVFCA  229 (489)
Q Consensus       223 ~~~~~~~  229 (489)
                      +..+++.
T Consensus       176 ~~~~~vr  182 (250)
T PF06813_consen  176 VAMFFVR  182 (250)
T ss_pred             HHhhhee
Confidence            4444443

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.51  E-value=2.1e-07  Score=87.21  Aligned_cols=148  Identities=16%  Similarity=0.107  Sum_probs=112.1

Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCc
Q 011277          321 LSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGA  400 (489)
Q Consensus       321 ~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  400 (489)
                      ...|+.+...++.+++.+.+.|.+.||+|+|..+.+|+..+..+.+++.+..+..        +.+..-.+-+++.+...
T Consensus       106 ~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~--------~l~vAR~LQgvgsA~~~  177 (464)
T KOG3764|consen  106 TQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYP--------MLFVARSLQGVGSAFAD  177 (464)
T ss_pred             cchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhH--------HHHHHHHHhhhhHHHHH
Confidence            3467888888999999999999999999999999999999998888776543221        11111222223222221


Q ss_pred             cccccccccccCCchh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHhhcccCCCCC
Q 011277          401 GPVPSLLLPEIFPSRI-RAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNVVETKGKS  477 (489)
Q Consensus       401 ~~~~~~~~~e~~p~~~-r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~et~~~~  477 (489)
                       .....+.++.||.++ |++++|+...+-.+|..++|-+.+.+++..|....|.+++.++++...+-...++.+|..+
T Consensus       178 -tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~~~  254 (464)
T KOG3764|consen  178 -TSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTEMDP  254 (464)
T ss_pred             -hhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCccccCc
Confidence             122347889999887 6999999999999999999999899999999999999999999888776665565555444

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=98.50  E-value=3.3e-06  Score=85.70  Aligned_cols=142  Identities=15%  Similarity=0.203  Sum_probs=88.0

Q ss_pred             HHHHHhcCCC--cchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHH
Q 011277          313 SSVFKSAGLS--SGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGML  390 (489)
Q Consensus       313 ~~~~~~~~~~--~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  390 (489)
                      +.+..+.|-+  ..+......++..++.++.|+++|.+|||..++.+.++..++.+....+.      ....  .+.+..
T Consensus        68 ~~I~~diG~~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~------~~~~--~iag~~  139 (599)
T PF06609_consen   68 PYINADIGGSDNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQ------NMNT--FIAGMV  139 (599)
T ss_pred             HHHHHhcCCCccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCC------cHHH--HHHHHH
Confidence            3444444433  23566667788888999999999999999999888877777766543221      1122  233444


Q ss_pred             HHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHH
Q 011277          391 MFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVA  464 (489)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~  464 (489)
                      +++++.  |...+....++|+.|.+.|..+.++.....-.....++.+...+..+.+|+|.|.+......+.++
T Consensus       140 l~Gvga--G~~~~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~v  211 (599)
T PF06609_consen  140 LYGVGA--GVQELAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIALV  211 (599)
T ss_pred             HHHHhh--HHHHHHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHHH
Confidence            444332  222344456899999999988877665433222333444443333456788888887776555443

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=98.47  E-value=5e-07  Score=86.35  Aligned_cols=180  Identities=16%  Similarity=0.047  Sum_probs=121.6

Q ss_pred             HHHHHHHHHHhhhhccceeeccchhhhhhhcCCCCchhHH--H-----HHHHHHHHHHHHHHHhhHhhhhhchhhHHHHH
Q 011277           51 PHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAE--G-----LVVSMCLGGAFIGSTLSGWIADGVGRRRAFQL  123 (489)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~-----~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~  123 (489)
                      ++++..+...|+......-.+.....+....++..++...  -     +-.-+...++..|..+...+.|++|||+..+.
T Consensus       304 ~~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~  383 (538)
T KOG0252|consen  304 KHLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLM  383 (538)
T ss_pred             HHHHHHHHHHHhhhhhhhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHh
Confidence            3455666666665544444555666777777764432221  0     11112233455577788889999999999999


Q ss_pred             hHHHHHHHHHHHhhcchH----HHHHHH-HHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhc
Q 011277          124 CALPMIIGASISATTRNL----IGMLLG-RFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGI  198 (489)
Q Consensus       124 ~~~~~~i~~~l~~~~~~~----~~l~~~-R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~  198 (489)
                      +.+++++..+..+...|-    ..+++. -+.+=++.-+.-.....+.+|.+|.+.||..-++-..+.-+|.++|...-.
T Consensus       384 GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~  463 (538)
T KOG0252|consen  384 GFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFL  463 (538)
T ss_pred             hHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhh
Confidence            999999998888877661    122222 222223333444566678899999999999999988888888888887766


Q ss_pred             cccc-----CCchhHHHHHHHHHHHHHHHHHhhhccCC
Q 011277          199 PVKE-----IAGWWRICFWVSIVPAAILCLAMVFCAES  231 (489)
Q Consensus       199 ~l~~-----~~~~wr~~f~~~~i~~~~~~~~~~~~~Es  231 (489)
                      ++.+     ..+ -|+.|++.....++-.+...++|||
T Consensus       464 ~~t~~~yp~~~g-~~~v~~i~~~~~~~gi~~T~l~pEt  500 (538)
T KOG0252|consen  464 YLTDHNYPPNIG-VRNVFIILAGCMLLGILFTLLIPET  500 (538)
T ss_pred             HhhhccCCcccc-chHHHHHHHHHHHHhHheeEEeecc
Confidence            6665     334 5889988766666666667788998

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.45  E-value=8.6e-06  Score=81.32  Aligned_cols=160  Identities=13%  Similarity=0.033  Sum_probs=91.3

Q ss_pred             HHHhcCCCcc---hHHHHHHHHHHHHHHHHHHHhh----hcCCchhHHHh-hHHHHHHHHHHHHHhhcc---C---CCc-
Q 011277          315 VFKSAGLSSG---LANVFVGIANLLGSVVAMVLMD----KLGRKALLQWS-FFSMAVSMAIQVAASSSY---I---PGS-  379 (489)
Q Consensus       315 ~~~~~~~~~~---~~~~~~~i~~~~g~~~~g~l~d----r~grr~~~~~~-~~~~~i~~~~~~~~~~~~---~---~~~-  379 (489)
                      +++..+.+..   .......+..++..++.|+++|    |+|||+..+.. .....++..++.......   .   ... 
T Consensus        30 yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~~~~~~~~~  109 (477)
T TIGR01301        30 YVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHLFGDNLDKKT  109 (477)
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhhccccccccc
Confidence            4556666543   4445556777788889999999    59999987764 333334333332221100   0   000 


Q ss_pred             --hhhHHHHHHHHHHHHHHhcCccccccccccccCCchhh--hhHHHHHHHHHHHHHHHHHHHHHHH--HHHh-------
Q 011277          380 --ASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIR--AKAMAVCMSVHWVINFFVGLLFLRL--LEQL-------  446 (489)
Q Consensus       380 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r--~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~-------  446 (489)
                        ...+..+.++.+..+..+....|. .++.+|+.|++.|  +.+.++.+....+|+.+++.+....  .+..       
T Consensus       110 ~~~~i~~~~i~~~lld~~~n~~~~p~-rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~  188 (477)
T TIGR01301       110 KPRAIIVFVVGFWILDVANNMLQGPC-RAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEA  188 (477)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHH-HHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccc
Confidence              111222222323333333333444 4689999998866  5688887777778777777654332  1111       


Q ss_pred             ------CCchhhHHHHHHHHHHHHHHHhhcccCCC
Q 011277          447 ------GPQLLYSIFGTFCLMAVAFVKRNVVETKG  475 (489)
Q Consensus       447 ------g~~~~~~~~~~~~~~~~~~~~~~~~et~~  475 (489)
                            +....|.+-+++.++...+.....+|..-
T Consensus       189 ~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~  223 (477)
T TIGR01301       189 CGVSCANLKSCFLIDIILLAILTYIALSAVKENPL  223 (477)
T ss_pred             cccccchHHHHHHHHHHHHHHHHHHHeeeeeccCC
Confidence                  22456666666666666677777888653

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PF13347 MFS_2: MFS/sugar transport protein

Probab=98.44  E-value=2.7e-06  Score=85.17  Aligned_cols=136  Identities=15%  Similarity=0.119  Sum_probs=103.2

Q ss_pred             HHhhhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhc
Q 011277           59 SSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATT  138 (489)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~  138 (489)
                      ..++........+...+.+.++. ++.++ ..+.......++..++.+++++++||+|||+++..+.++.+++.++..+.
T Consensus       233 ~~~~~~~~~~~~~~~~~y~~~~v-l~~~~-~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~  310 (428)
T PF13347_consen  233 AFFLQWLAFALMNTFLPYYFTYV-LGNEG-LISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFL  310 (428)
T ss_pred             HHHHHHhhhhhhhhHHHHHHHHH-hcCch-hhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHH
Confidence            33444444444455555454442 33232 34567778888889999999999999999999999999999999988877


Q ss_pred             c--hHHHHHHHHHHHhhhcccccccccccccccCCcc-------cchhhhhHHHHHHHHHHHHHHHh
Q 011277          139 R--NLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPF-------VRGTYGAFIQIATCLGLMGSLLI  196 (489)
Q Consensus       139 ~--~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~-------~Rg~~~~~~~~~~~~G~~~g~~~  196 (489)
                      +  |.+.+++.-++.|++.|........+++|..+.+       +.|...+.++...-+|..++..+
T Consensus       311 ~~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i  377 (428)
T PF13347_consen  311 GPGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAI  377 (428)
T ss_pred             HhhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHH
Confidence            5  9999999999999999999999999999999843       34677777777777775555544

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=98.41  E-value=1.9e-06  Score=84.68  Aligned_cols=150  Identities=21%  Similarity=0.249  Sum_probs=111.3

Q ss_pred             HHHHHHHhhhhccceeeccchhhhhhhcC-CCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHH
Q 011277           54 LVATLSSFLFGYHLGVVNEPLESISLDLG-FNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGA  132 (489)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~  132 (489)
                      +...+..++.+...+.++...+...+|.| .+.+  ..+...+...+.-.+.-...+++..|+|-|+++.++.+.+++=.
T Consensus       210 ~~Fll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~--~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~  287 (400)
T PF03825_consen  210 LVFLLAAFLIGISHAAYYTFFSIYLQELGGYSGS--TIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRW  287 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhh--HHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence            33444445555555555556666677776 4332  23445555556666777889999999999999999999998888


Q ss_pred             HHHhhc-chHHHHH----HHHHHHhhhcccccccccccccccCCcccchhhhhHHHH-HHHHHHHHHHHhhcccccCCc
Q 011277          133 SISATT-RNLIGML----LGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQI-ATCLGLMGSLLIGIPVKEIAG  205 (489)
Q Consensus       133 ~l~~~~-~~~~~l~----~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~-~~~~G~~~g~~~~~~l~~~~~  205 (489)
                      .+.+.. ++.+...    ....++|+.-|.....+..|+.+..|++.|+++.++++. ...+|..+|..+++.+.+..+
T Consensus       288 ~l~a~~~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g  366 (400)
T PF03825_consen  288 LLYAYFSDPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFG  366 (400)
T ss_pred             HHHHHhcCCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhc
Confidence            787776 5544433    345679999999999999999999999999999999875 467889999988888766544

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=98.41  E-value=3.1e-06  Score=87.03  Aligned_cols=136  Identities=18%  Similarity=0.169  Sum_probs=93.4

Q ss_pred             chHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHH-hcCccc
Q 011277          324 GLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTF-ALGAGP  402 (489)
Q Consensus       324 ~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  402 (489)
                      .+......++.++|+++.|.++||+|||+++..+.++..++.+......+      ... +   ..+-+..++ ..+...
T Consensus       121 ~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~------~~~-~---~~~Rfl~G~~~~~~~~  190 (521)
T KOG0255|consen  121 ALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPN------YWM-F---LIFRFLSGFFGSGPLT  190 (521)
T ss_pred             HHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCc------HHH-H---HHHHHHHHhhccchhH
Confidence            45567778999999999999999999999999988887777655443322      111 1   122222222 233445


Q ss_pred             cccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHhhcccC
Q 011277          403 VPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNVVET  473 (489)
Q Consensus       403 ~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~et  473 (489)
                      +.+.+..|+++++.|+.+..+ ....+.++.+.+....++..  +|++.+.+.........++ +...||.
T Consensus       191 ~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~~~~-~~l~~Es  257 (521)
T KOG0255|consen  191 VGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIISIPSGLFLLL-WFLPPES  257 (521)
T ss_pred             HhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHH-HHccCcC
Confidence            667788999999999999999 77777777777776666655  6666666666555555444 4445575

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=98.40  E-value=2.3e-05  Score=74.72  Aligned_cols=149  Identities=18%  Similarity=0.114  Sum_probs=94.8

Q ss_pred             HhcCCCcchHHHHHH---HHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHH
Q 011277          317 KSAGLSSGLANVFVG---IANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFV  393 (489)
Q Consensus       317 ~~~~~~~~~~~~~~~---i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  393 (489)
                      +..+++.+...+...   +...+..+.-|.+.||+|.|+....+.+...+-++.........   .... +.+..+++  
T Consensus        42 ~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~---~~~~-ll~~gll~--  115 (417)
T COG2223          42 SDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYP---STWQ-LLVIGLLL--  115 (417)
T ss_pred             cccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCC---chHH-HHHHHHHH--
Confidence            555666554444444   44445556789999999999998888887777777665554321   1112 22222222  


Q ss_pred             HHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CchhhHHHHHHHHHHHH---HHH
Q 011277          394 LTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLG---PQLLYSIFGTFCLMAVA---FVK  467 (489)
Q Consensus       394 ~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g---~~~~~~~~~~~~~~~~~---~~~  467 (489)
                       +.+-+...+...++++-||+|++|.+.|+.. .+|+|..+..++.+.+....+   +..+..++.+..++..+   +..
T Consensus       116 -G~~GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~  193 (417)
T COG2223         116 -GLAGASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGM  193 (417)
T ss_pred             -hcccceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence             2222223344457899999999999999988 999999999988888877777   55555555544444333   223


Q ss_pred             hhcccC
Q 011277          468 RNVVET  473 (489)
Q Consensus       468 ~~~~et  473 (489)
                      ...||.
T Consensus       194 ~d~p~~  199 (417)
T COG2223         194 NDVPEH  199 (417)
T ss_pred             CCChhh
Confidence            345663

>PRK09669 putative symporter YagG; Provisional

Probab=98.40  E-value=3.1e-06  Score=85.14  Aligned_cols=108  Identities=16%  Similarity=0.072  Sum_probs=79.2

Q ss_pred             HHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhh--cchHHHHHHHHHHHhhhcccccccccccccc
Q 011277           91 GLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISAT--TRNLIGMLLGRFVVGTGMGLGPTVAALYVTE  168 (489)
Q Consensus        91 ~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~--~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e  168 (489)
                      +.......+...++.+++++++||+|||+.+..+.++.+++.....+  .++.+.+.+..++.|++.+...+....+++|
T Consensus       267 ~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~ad  346 (444)
T PRK09669        267 TLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSMFSD  346 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34445556677788899999999999999999887766654433222  3567777888899999999999999999999


Q ss_pred             cCCcc-------cchhhhhHHHHHHHHHHHHHHHhhc
Q 011277          169 VSPPF-------VRGTYGAFIQIATCLGLMGSLLIGI  198 (489)
Q Consensus       169 ~~~~~-------~Rg~~~~~~~~~~~~G~~~g~~~~~  198 (489)
                      ..+.+       +.|...+.++....+|..+|+.+++
T Consensus       347 ~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g  383 (444)
T PRK09669        347 VVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVG  383 (444)
T ss_pred             hhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence            98632       2345667777677777666665543

>TIGR00805 oat sodium-independent organic anion transporter

Probab=98.35  E-value=7e-06  Score=85.80  Aligned_cols=122  Identities=19%  Similarity=0.048  Sum_probs=83.4

Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhc---cCC--------------------
Q 011277          321 LSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSS---YIP--------------------  377 (489)
Q Consensus       321 ~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~---~~~--------------------  377 (489)
                      ...|+......++.+++.++.+++.||.|||+.+.++.++++++.++.......   +..                    
T Consensus        68 ~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~  147 (633)
T TIGR00805        68 SSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCME  147 (633)
T ss_pred             CcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCccccccccccccccccccccccC
Confidence            345667777889999999999999999999999999988888888776543200   000                    


Q ss_pred             ------------------C--chhhHHHHHHHHHHHHHHhc-CccccccccccccCCchhhhhHHHHHHHHHHHHHHHHH
Q 011277          378 ------------------G--SASLYLSVGGMLMFVLTFAL-GAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVG  436 (489)
Q Consensus       378 ------------------~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~  436 (489)
                                        .  .....+.+..  -+..+.+. ...++...++.|.+|++.|+...++......++..+++
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~  225 (633)
T TIGR00805       148 NLTQALRPTQCPSECQKQHKESLMWLLFLVS--QLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGY  225 (633)
T ss_pred             CCCCCccccccccccccccCCCceehhhHHH--HHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHHhhhHHHH
Confidence                              0  0011111111  11222222 12355667999999999999999999999988888888


Q ss_pred             HHHHHHHH
Q 011277          437 LLFLRLLE  444 (489)
Q Consensus       437 ~~~~~l~~  444 (489)
                      .+.+.+.+
T Consensus       226 llgg~l~~  233 (633)
T TIGR00805       226 LLGSFCLQ  233 (633)
T ss_pred             HHHHHHHh
Confidence            77666554

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PRK10429 melibiose:sodium symporter; Provisional

Probab=98.35  E-value=4.3e-06  Score=84.82  Aligned_cols=108  Identities=8%  Similarity=0.032  Sum_probs=79.0

Q ss_pred             HHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhh-----cchHHHHHHHHHHHhhhcccccccccc
Q 011277           90 EGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISAT-----TRNLIGMLLGRFVVGTGMGLGPTVAAL  164 (489)
Q Consensus        90 ~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~-----~~~~~~l~~~R~l~G~g~g~~~~~~~~  164 (489)
                      .++..+...++..++.+++++++||+|||+++..+.++.+++.+....     ..+.+.+++.-++.|++.+...+...+
T Consensus       268 ~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~a  347 (473)
T PRK10429        268 FPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWVLQVI  347 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455556666778899999999999999999999888877666555432     345666667778889998888888888


Q ss_pred             cccccCCc-------ccchhhhhHHHHHHHHHHHHHHHhh
Q 011277          165 YVTEVSPP-------FVRGTYGAFIQIATCLGLMGSLLIG  197 (489)
Q Consensus       165 ~i~e~~~~-------~~Rg~~~~~~~~~~~~G~~~g~~~~  197 (489)
                      +++|..+.       ++.|...+......-+|..+++.+.
T Consensus       348 m~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~  387 (473)
T PRK10429        348 MVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFI  387 (473)
T ss_pred             HHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHH
Confidence            99999662       2234577777777667665555443

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=98.35  E-value=2.2e-05  Score=77.95  Aligned_cols=154  Identities=18%  Similarity=0.170  Sum_probs=94.3

Q ss_pred             HHHHHHhcCCCcc---hHHHHHHHHHHHHHHHHHHHhhhc-----CCch-hHHHhhHHHHHHHHHHHHHhhccCCCchhh
Q 011277          312 SSSVFKSAGLSSG---LANVFVGIANLLGSVVAMVLMDKL-----GRKA-LLQWSFFSMAVSMAIQVAASSSYIPGSASL  382 (489)
Q Consensus       312 ~~~~~~~~~~~~~---~~~~~~~i~~~~g~~~~g~l~dr~-----grr~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  382 (489)
                      .|..+++.|.+..   +.......  .+..++.|+++||+     |||| .+..+....+++...+....    + ....
T Consensus        22 ~~~~l~~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~~----~-~~~~   94 (402)
T PRK11902         22 LQAWMTVEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAFCP----P-HAAL   94 (402)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHhcC----c-cchH
Confidence            3455666676643   22222221  57778999999999     7776 56565555555554433221    1 1111


Q ss_pred             HHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCchhhHHHHHHHHH
Q 011277          383 YLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQ-LGPQLLYSIFGTFCLM  461 (489)
Q Consensus       383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~g~~~~~~~~~~~~~~  461 (489)
                      +......++.. .+.....|....+.+|.+|+++|+++.++......++..+++.+...+.+. .||...|.+.+++.++
T Consensus        95 ~~l~~~~~~~~-~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~  173 (402)
T PRK11902         95 WPLAGLAVLVA-FLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLA  173 (402)
T ss_pred             HHHHHHHHHHH-HHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHH
Confidence            21111111222 223334566667899999999999999999888788888888777666664 4888888887776655


Q ss_pred             HHHHHHhhcccCC
Q 011277          462 AVAFVKRNVVETK  474 (489)
Q Consensus       462 ~~~~~~~~~~et~  474 (489)
                      ..+. ....||++
T Consensus       174 ~~l~-~~~~~e~~  185 (402)
T PRK11902        174 GALT-TLWAPEPE  185 (402)
T ss_pred             HHHH-HHhcCCCc
Confidence            5443 34567664

>TIGR00806 rfc RFC reduced folate carrier

Probab=98.29  E-value=5.8e-05  Score=74.04  Aligned_cols=129  Identities=16%  Similarity=0.100  Sum_probs=89.2

Q ss_pred             HHHHHHhcCCC----cchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHH
Q 011277          312 SSSVFKSAGLS----SGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVG  387 (489)
Q Consensus       312 ~~~~~~~~~~~----~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  387 (489)
                      .+.+.++.|++    .|...-....+..+..+.+|++.||+|-|+++..+.+.-.+...+.....+        ......
T Consensus        49 ~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~S--------l~~L~i  120 (511)
T TIGR00806        49 TPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTS--------VWHMQL  120 (511)
T ss_pred             HHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHH--------HHHHHH
Confidence            34444455543    456667778899999999999999999999988887776666665554321        111111


Q ss_pred             HHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchh
Q 011277          388 GMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLL  451 (489)
Q Consensus       388 ~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~  451 (489)
                      .-++++++-+...  ..+.++...+|++.|+++.|+..+...+|.++++.+... ....||...
T Consensus       121 ~R~llGvaEA~~~--A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~gWr~y  181 (511)
T TIGR00806       121 MEVFYSVTMAARI--AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTLGWISY  181 (511)
T ss_pred             HHHHHHHHHHHHH--HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCchhH
Confidence            2222333222222  455688899999999999999999999999999988766 556777543

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PRK10133 L-fucose transporter; Provisional

Probab=98.27  E-value=8.6e-06  Score=81.63  Aligned_cols=131  Identities=15%  Similarity=0.055  Sum_probs=94.1

Q ss_pred             hhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhcchHHHHHHHHHHHhhhcccc
Q 011277           79 LDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLG  158 (489)
Q Consensus        79 ~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l~~~R~l~G~g~g~~  158 (489)
                      +.+|.+  +.+.++....+.++..+|.++.+++.||+|||+++..+.++.+++..+..+.++.. .+..=.+.|++.+..
T Consensus       288 ~~~g~s--~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~glg~~~i  364 (438)
T PRK10133        288 EIPGMT--AGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHV-GLIALTLCSAFMSIQ  364 (438)
T ss_pred             hcCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChH-HHHHHHHHHHHHHHH
Confidence            345665  44567888999999999999999999999999999888877777666665655542 345567899999999


Q ss_pred             cccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHH
Q 011277          159 PTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVS  214 (489)
Q Consensus       159 ~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~  214 (489)
                      +|.......|..|++ .+.+.++..+....|.+++++.| .+.+..|.-|..|++.
T Consensus       365 ~P~~~s~a~~~~~~~-~~~as~l~~~~~~g~~~~~~i~G-~l~~~~g~~~~~~~v~  418 (438)
T PRK10133        365 YPTIFSLGIKNLGQD-TKYGSSFIVMTIIGGGIVTPVMG-FVSDAAGNIPTAELIP  418 (438)
T ss_pred             HHHHHHHHHcccchh-hccchhHHhHHhccchHHHHHHH-HHHHhccchHHHHHHH
Confidence            999999888887764 56777777654433344444444 4444443236666653

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.23  E-value=2e-05  Score=77.27  Aligned_cols=112  Identities=19%  Similarity=0.240  Sum_probs=87.3

Q ss_pred             hcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhcc--hHHHHHHHHHHHhhhccc
Q 011277           80 DLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTR--NLIGMLLGRFVVGTGMGL  157 (489)
Q Consensus        80 ~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~--~~~~l~~~R~l~G~g~g~  157 (489)
                      ++.++.++....+.......+..++.+++.+|++|+|||+++.++.++.+++..+.-+.+  +....++..++.++|.+.
T Consensus       264 ~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~  343 (467)
T COG2211         264 TYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGI  343 (467)
T ss_pred             EEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhc
Confidence            455666776666667777777778899999999999999999999999999988877665  778888899999999999


Q ss_pred             ccccccccccccCCcc-----cc--hhhhhHHHHHHHHHHH
Q 011277          158 GPTVAALYVTEVSPPF-----VR--GTYGAFIQIATCLGLM  191 (489)
Q Consensus       158 ~~~~~~~~i~e~~~~~-----~R--g~~~~~~~~~~~~G~~  191 (489)
                      ..+...+.++|..+-.     +|  |...+.+....=+|..
T Consensus       344 ~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~a  384 (467)
T COG2211         344 ANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLA  384 (467)
T ss_pred             cccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHH
Confidence            9999999999887632     22  4444555544444533

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=98.10  E-value=7.2e-06  Score=79.49  Aligned_cols=133  Identities=16%  Similarity=0.086  Sum_probs=103.8

Q ss_pred             HHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhcchHHHHHHHHHHHhhhccccccccccccccc
Q 011277           90 EGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEV  169 (489)
Q Consensus        90 ~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~  169 (489)
                      .|...+.-.+.-++.-.+..++.+|+|.|+.++++..++++=.+++++++|.+.+.+.+.+.|+-.+........|+++.
T Consensus       261 ~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fkYI~~~  340 (412)
T PF01306_consen  261 YGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFKYITAH  340 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            56777777777778888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcccchhhhhHH-HHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHHHH
Q 011277          170 SPPFVRGTYGAFI-QIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCL  223 (489)
Q Consensus       170 ~~~~~Rg~~~~~~-~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~i~~~~~~~  223 (489)
                      +|++..++...+. +.+..+|..+.+..++.+.+..| .+..|++.+...+...+
T Consensus       341 fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G-~~~tylimg~iv~~~~l  394 (412)
T PF01306_consen  341 FDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIG-FQHTYLIMGLIVLPFTL  394 (412)
T ss_dssp             S-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred             CCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcC-cHHHHHHHHHHHHHHHH
Confidence            9998876665553 56777777777777777766666 36667664444443333

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=98.05  E-value=0.0018  Score=67.59  Aligned_cols=140  Identities=16%  Similarity=0.171  Sum_probs=95.5

Q ss_pred             hhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhh-hchhhHHHHHhHHHHHHHHHHHhhcch--------HHHHHHHHH
Q 011277           79 LDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIAD-GVGRRRAFQLCALPMIIGASISATTRN--------LIGMLLGRF  149 (489)
Q Consensus        79 ~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~D-r~GRr~~~~~~~~~~~i~~~l~~~~~~--------~~~l~~~R~  149 (489)
                      +.+|.+.+.  ...+...+..-.-+.++++|.++| ++||++.+.++.++..+|.++.+++..        ....+++=.
T Consensus        16 ~~lg~~~~~--A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLa   93 (654)
T TIGR00926        16 NFLGFSEST--STVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLA   93 (654)
T ss_pred             HHcCCcHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHH
Confidence            345665433  334444555555577889999999 599999999999999999888766421        123556778


Q ss_pred             HHhhhcccccccccccccccCCccc---chhhhhHHHHHHHHHHHHHHHhhccccc-------CCchhHHHHHHHHHHHH
Q 011277          150 VVGTGMGLGPTVAALYVTEVSPPFV---RGTYGAFIQIATCLGLMGSLLIGIPVKE-------IAGWWRICFWVSIVPAA  219 (489)
Q Consensus       150 l~G~g~g~~~~~~~~~i~e~~~~~~---Rg~~~~~~~~~~~~G~~~g~~~~~~l~~-------~~~~wr~~f~~~~i~~~  219 (489)
                      +..+|.|+.-+...+...|.+++++   |..+..++..+.++|.++++.+...+.+       ..+ |...|.+..+..+
T Consensus        94 Lia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~-~~~aF~i~~i~m~  172 (654)
T TIGR00926        94 LIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDC-YPLAFGVPAILMI  172 (654)
T ss_pred             HHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcc-hHHHHHHHHHHHH
Confidence            8888999999999999999998654   4455666667777777766665544432       124 5777776544444


Q ss_pred             HH
Q 011277          220 IL  221 (489)
Q Consensus       220 ~~  221 (489)
                      +.
T Consensus       173 ia  174 (654)
T TIGR00926       173 LA  174 (654)
T ss_pred             HH
Confidence            33

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=98.02  E-value=6.8e-05  Score=66.78  Aligned_cols=73  Identities=23%  Similarity=0.299  Sum_probs=50.9

Q ss_pred             HHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhcchHHHHHHHHHHHhhhcccccccccc-cccccCCcccchhh
Q 011277          103 IGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAAL-YVTEVSPPFVRGTY  178 (489)
Q Consensus       103 ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~-~i~e~~~~~~Rg~~  178 (489)
                      +...+.|.|+||-|||+..+.-.+.+++++ +.-.+++|-+++++|.+.|++.+..+..--. ++.|.-  ++|+.-
T Consensus        87 LFGtivgSLaDkqGRKracvtycitYiLsC-iTKhSpqYkVLmVGR~LGGiaTsLLFSaFEsWliaEHn--ekr~Fe  160 (454)
T KOG4332|consen   87 LFGTIVGSLADKQGRKRACVTYCITYILSC-ITKHSPQYKVLMVGRVLGGIATSLLFSAFESWLIAEHN--EKRGFE  160 (454)
T ss_pred             HHHHHHHHHHhhhccccceeeehHHHHHHH-HhhcCCceEEEeehhhhhhHHHHHHHHHHHHHHHHHhh--hccCCh
Confidence            444677889999999998766555554433 4456788999999999999998876654333 455543  455543

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=98.00  E-value=6.4e-05  Score=62.79  Aligned_cols=104  Identities=18%  Similarity=0.104  Sum_probs=86.3

Q ss_pred             HHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhcchHHHHHHHHHHHhhhcccccccccccccccCCc
Q 011277           93 VVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPP  172 (489)
Q Consensus        93 ~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~  172 (489)
                      ..++......+.+++.+.+.+++|.|+.++++.+++.+-.. +-+-++.+.++.+-.+.|++.+..+.....++.+..++
T Consensus        42 slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~-~~~~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~  120 (156)
T PF05978_consen   42 SLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIA-SFFYPNSYTLYPASALLGFGAALLWTAQGTYLTSYSTE  120 (156)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHH-HHHhhhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCH
Confidence            45555666778889999999999999999999999886443 33567788899999999999999999999999999999


Q ss_pred             ccchhhhhHHHHHHHHHHHHHHHhh
Q 011277          173 FVRGTYGAFIQIATCLGLMGSLLIG  197 (489)
Q Consensus       173 ~~Rg~~~~~~~~~~~~G~~~g~~~~  197 (489)
                      +.|++..+++......+.++|.++.
T Consensus       121 ~~~~~~~~ifw~i~~~s~i~G~~~~  145 (156)
T PF05978_consen  121 ETIGRNTGIFWAIFQSSLIFGNLFL  145 (156)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHH
Confidence            9999998887777666766665554

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>TIGR00788 fbt folate/biopterin transporter

Probab=97.99  E-value=3.8e-05  Score=77.58  Aligned_cols=149  Identities=11%  Similarity=0.006  Sum_probs=108.6

Q ss_pred             hcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhc----------chHHHHHHHHH
Q 011277           80 DLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATT----------RNLIGMLLGRF  149 (489)
Q Consensus        80 ~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~----------~~~~~l~~~R~  149 (489)
                      ++|.+.+  +.|+......++..+|....+++.+|++.|+++.++.++.+++.......          ++.+.....-+
T Consensus       282 ~lG~s~~--~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~  359 (468)
T TIGR00788       282 CLPGGPS--FSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSI  359 (468)
T ss_pred             cCCCCcc--hhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhH
Confidence            4566544  45777777778999999999999999999999999999998877554311          33334555678


Q ss_pred             HHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCc-----h-hHHHHH-HHHHHHHHHH
Q 011277          150 VVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAG-----W-WRICFW-VSIVPAAILC  222 (489)
Q Consensus       150 l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~-----~-wr~~f~-~~~i~~~~~~  222 (489)
                      +++++.+........++.+.+|++.+|...++++...++|..+++.+|+.+.+..|     . .++... ++.++.++.+
T Consensus       360 l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~~~~~~~~~i~i~~~~~l~~l  439 (468)
T TIGR00788       360 IAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIGITCDNSNNLWLLILGHSLAPLLPL  439 (468)
T ss_pred             HHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHH
Confidence            88888888888889999999999999999999999999998888887766544332     1 122222 2334444444


Q ss_pred             HHhhhccC
Q 011277          223 LAMVFCAE  230 (489)
Q Consensus       223 ~~~~~~~E  230 (489)
                      .+.+++|+
T Consensus       440 ~~~~llP~  447 (468)
T TIGR00788       440 PLLHLLPR  447 (468)
T ss_pred             HHHHhCCC
Confidence            44457775

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=97.98  E-value=0.0003  Score=66.90  Aligned_cols=160  Identities=17%  Similarity=0.126  Sum_probs=106.1

Q ss_pred             HHHHhcCCCcchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHH
Q 011277          314 SVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFV  393 (489)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  393 (489)
                      ..++....++++.......+.+++++..+++.+|+|.|+-+..++.++++++.+..-+....    ..   .......|.
T Consensus        41 ~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~~~----~y---~~FL~~lFi  113 (422)
T COG0738          41 EVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSK----SY---GFFLVALFI  113 (422)
T ss_pred             HHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhh----hH---HHHHHHHHH
Confidence            33444444567788888899999999999999999999999999999999888775433211    11   111122233


Q ss_pred             HHHhcCc-cccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------hCCchhhH
Q 011277          394 LTFALGA-GPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQ-------------------LGPQLLYS  453 (489)
Q Consensus       394 ~~~~~~~-~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------------------~g~~~~~~  453 (489)
                      .+.+.+. -.....|+..+.|++..+.-+.+...++.+|+.++|.+...+..+                   ..+...|.
T Consensus       114 la~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~~~~~~~~~~~~v~~pYl  193 (422)
T COG0738         114 LASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAAQILAIKGADASSVQFPYL  193 (422)
T ss_pred             HHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhHHH
Confidence            3333321 112223778888988889999999999999999999987776552                   12456677


Q ss_pred             HHHHHHHHHHHHH-HhhcccCCCCCHHH
Q 011277          454 IFGTFCLMAVAFV-KRNVVETKGKSLQE  480 (489)
Q Consensus       454 ~~~~~~~~~~~~~-~~~~~et~~~~~~e  480 (489)
                      .++..+++..+.. ....||.+-.+.++
T Consensus       194 ~~~~~lvll~v~~~~~k~p~~~~~~~~~  221 (422)
T COG0738         194 ILAGLLVLLAVLILLSKLPDLQVAAPSL  221 (422)
T ss_pred             HHHHHHHHHHHHHHhccCCcCCcccccc
Confidence            7776665555433 34456665444333

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=97.98  E-value=0.00019  Score=71.69  Aligned_cols=153  Identities=20%  Similarity=0.143  Sum_probs=101.0

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccc
Q 011277          323 SGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGP  402 (489)
Q Consensus       323 ~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  402 (489)
                      .++.......|.+++.+.++++.||+|-|+++..+.++..+..++.=.....   +   .+..+..-++.+++.+. ..|
T Consensus        75 k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~---~---~~~~~~~R~lqGl~~g~-~~p  147 (466)
T KOG2532|consen   75 KGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASI---G---FYLLLVLRFLQGLGQGV-LFP  147 (466)
T ss_pred             HHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHh---c---chhhHHHHHHhHHHHhH-HHh
Confidence            4566777889999999999999999999999888777666655543222111   0   01111112222222221 235


Q ss_pred             cccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCchhhHHHHHHHHHHHHHH-Hhh--cccC-CCCC
Q 011277          403 VPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQ-LGPQLLYSIFGTFCLMAVAFV-KRN--VVET-KGKS  477 (489)
Q Consensus       403 ~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~g~~~~~~~~~~~~~~~~~~~-~~~--~~et-~~~~  477 (489)
                      ....+.+.-.|++.|++..++..+...++.++.-.+.+.+-++ .||...|++.+++.++..+.. ++.  -|+. +..+
T Consensus       148 a~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~h~~is  227 (466)
T KOG2532|consen  148 AIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPSKHPNIS  227 (466)
T ss_pred             hhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCcccCCCCC
Confidence            6666888999999999999999988877776665566666666 899999999998876665432 222  3443 4455


Q ss_pred             HHHHH
Q 011277          478 LQEIE  482 (489)
Q Consensus       478 ~~e~~  482 (489)
                      .+|.+
T Consensus       228 ~~El~  232 (466)
T KOG2532|consen  228 EKELK  232 (466)
T ss_pred             HHHHH
Confidence            55543

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=97.96  E-value=0.00024  Score=64.39  Aligned_cols=134  Identities=16%  Similarity=0.173  Sum_probs=83.7

Q ss_pred             HHHHHhHHHHHHhcCCCcchHH---HHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhh
Q 011277          306 NAIFYFSSSVFKSAGLSSGLAN---VFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASL  382 (489)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~---~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  382 (489)
                      +....|.+.+.+..+++....+   ....++..+| ++.|.+.|++|.+.++.++.....++..++........+....+
T Consensus        19 Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~   97 (250)
T PF06813_consen   19 YTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVW   97 (250)
T ss_pred             cchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchH
Confidence            3445678888888888765433   3344666554 78899999999999999998888888877766655443322111


Q ss_pred             HHHHHHHHHHHHHHhcCc-cccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011277          383 YLSVGGMLMFVLTFALGA-GPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLE  444 (489)
Q Consensus       383 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~  444 (489)
                      .+.   +..+..+.+.+. ......-..+.|| ++||++.|+.-...-+.+.+...+......
T Consensus        98 ~~~---~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~  156 (250)
T PF06813_consen   98 LMC---LFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFG  156 (250)
T ss_pred             HHH---HHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcC
Confidence            111   111111111111 1111123457898 689999999998888877777766554443

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=97.93  E-value=4.1e-05  Score=56.06  Aligned_cols=74  Identities=18%  Similarity=0.188  Sum_probs=66.1

Q ss_pred             eeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhcchHHHH
Q 011277           69 VVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGM  144 (489)
Q Consensus        69 ~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l  144 (489)
                      .+++.+|.+.+|.+++.+  +.+++.+...+||.+|++...++.++..+|+.+..+.+...+....+++.++++..
T Consensus        10 ayTplLP~M~~~~~ls~~--~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~~~w   83 (85)
T PF06779_consen   10 AYTPLLPLMQADGGLSLS--QAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSFWLW   83 (85)
T ss_pred             HHHhHhHHHHHhcCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhchHHH
Confidence            467789999999988754  56899999999999999999999999999999999999999999999998887654

Note that many members are hypothetical proteins.

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=97.92  E-value=7.9e-05  Score=66.99  Aligned_cols=125  Identities=22%  Similarity=0.156  Sum_probs=87.7

Q ss_pred             hhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHH-HHHHHhhcchHHHHHHHHHHHhhhc
Q 011277           77 ISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMII-GASISATTRNLIGMLLGRFVVGTGM  155 (489)
Q Consensus        77 i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i-~~~l~~~~~~~~~l~~~R~l~G~g~  155 (489)
                      +.+.+|+|..+  .+.+.+....-.++.+++.|.++||+||+...+.+..+..+ +.....++  ++.=..+-.+.|++.
T Consensus       291 F~~rfGlS~~~--a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~Ft--~lsPy~~m~~lGLsy  366 (459)
T KOG4686|consen  291 FQKRFGLSAVS--AGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFFT--FLSPYTSMTFLGLSY  366 (459)
T ss_pred             HHHhhCCChhh--ccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHhh--hccHHHHHHHHhhhH
Confidence            67888887543  34556665555678899999999999999888766544333 33222222  111223456677766


Q ss_pred             ccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCc
Q 011277          156 GLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAG  205 (489)
Q Consensus       156 g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~  205 (489)
                      ........-.++-+.|.++.|++.++.+...++|..+-+++.+.+.+..+
T Consensus       367 sllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g  416 (459)
T KOG4686|consen  367 SLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDG  416 (459)
T ss_pred             HHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCC
Confidence            55544445567788899999999999999999999988998888877655

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=97.91  E-value=5.9e-05  Score=73.62  Aligned_cols=126  Identities=15%  Similarity=0.207  Sum_probs=88.2

Q ss_pred             HHHHHHHHHHhhhc-CCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCC
Q 011277          335 LLGSVVAMVLMDKL-GRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFP  413 (489)
Q Consensus       335 ~~g~~~~g~l~dr~-grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p  413 (489)
                      -+..+++||++||+ |+|+.+..+.+++.++.+++....   ..+....++.   +.+.. ......=|..+....|+||
T Consensus        75 Y~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~---~~~~~gl~i~---L~~I~-iG~Gl~K~NiS~llg~ly~  147 (498)
T COG3104          75 YLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISS---VSGPGGLYIG---LALII-VGTGLFKPNISSLLGELYP  147 (498)
T ss_pred             HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccc---cccccHHHHH---HHHHH-hccccccccHHHHHHHhcC
Confidence            35678899999995 999999999998888887765432   0112222222   22212 2222234777888999997


Q ss_pred             chh--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHH
Q 011277          414 SRI--RAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVK  467 (489)
Q Consensus       414 ~~~--r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~  467 (489)
                      ++.  |-.+.++.....++|+++.|.+.+.+-+..|+...|...++-...+.+..+
T Consensus       148 ~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~  203 (498)
T COG3104         148 KDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFL  203 (498)
T ss_pred             CCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHH
Confidence            543  667777777778899999999988888888988888888877766665443

>PRK11462 putative transporter; Provisional

Probab=97.87  E-value=0.00022  Score=71.93  Aligned_cols=81  Identities=16%  Similarity=0.107  Sum_probs=54.2

Q ss_pred             HHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhcc--hHHHHHHHHHHHhhhcccccccccccccc
Q 011277           91 GLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTR--NLIGMLLGRFVVGTGMGLGPTVAALYVTE  168 (489)
Q Consensus        91 ~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~--~~~~l~~~R~l~G~g~g~~~~~~~~~i~e  168 (489)
                      +.....+.++..+|.+++++++||+|||+++..+..+.++..++..+.+  +...+.+.-++.|++.+...+....+++|
T Consensus       266 ~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~~m~ad  345 (460)
T PRK11462        266 VAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQWVMMSD  345 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556667778889999999999999999998765554444333333322  22234444566777777666666677777


Q ss_pred             cCC
Q 011277          169 VSP  171 (489)
Q Consensus       169 ~~~  171 (489)
                      ..+
T Consensus       346 ~~d  348 (460)
T PRK11462        346 TVD  348 (460)
T ss_pred             hHh
Confidence            766

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=97.85  E-value=0.0003  Score=65.86  Aligned_cols=145  Identities=17%  Similarity=0.152  Sum_probs=106.4

Q ss_pred             ccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhh-chhhHHHHHhHHHHHHHHHHHhhcchHHHHHHHHH
Q 011277           71 NEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADG-VGRRRAFQLCALPMIIGASISATTRNLIGMLLGRF  149 (489)
Q Consensus        71 ~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr-~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l~~~R~  149 (489)
                      ..-+|.+..|-|+|..  +.|+..+...+.....++....+++| -.+|+.......++.+|.+...+.+.-..+.. -+
T Consensus       228 ~~WLP~ili~~G~sa~--~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~~~~~lw-~~  304 (395)
T COG2807         228 IGWLPAILIDRGLSAA--EAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPGQLPILW-AL  304 (395)
T ss_pred             HHHHHHHHHHcCCCHH--HhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhhHHHHH-HH
Confidence            3457999999998744  56899999999999999999999994 66888888888888887777666665544444 39


Q ss_pred             HHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHH---HHHHHhhcccccCCchhHHHHHHHHHHHHH
Q 011277          150 VVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGL---MGSLLIGIPVKEIAGWWRICFWVSIVPAAI  220 (489)
Q Consensus       150 l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~---~~g~~~~~~l~~~~~~wr~~f~~~~i~~~~  220 (489)
                      +.|+|.|+.++.+...+.+-.+..++.  ..+-.+++.+|.   ..||.+.+.+.+..|.|+...+......+.
T Consensus       305 llG~G~G~~F~laL~li~~rs~~a~~A--a~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i~  376 (395)
T COG2807         305 LLGLGQGGAFPLALTLILLRSSDAAIA--AALSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATLL  376 (395)
T ss_pred             HHhCccchHHHHHHHHHHhhcCChHHH--HHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHHH
Confidence            999999999999999988888655442  333344555553   456667677777777788877654443333

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=97.85  E-value=0.00018  Score=71.65  Aligned_cols=139  Identities=15%  Similarity=0.131  Sum_probs=97.8

Q ss_pred             HHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCcccccccccc
Q 011277          330 VGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLP  409 (489)
Q Consensus       330 ~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  409 (489)
                      .++..++.+..-|.++||+|||..+........+.........         +|+.+   +....+...........|.+
T Consensus        71 ~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~---------~~~~~---~~~l~g~~~~~~s~~~a~va  138 (463)
T KOG2816|consen   71 AGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG---------YWFFL---LLGLSGGFSAIFSVGFAYVA  138 (463)
T ss_pred             hHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH---------HHHhh---hcccccchhhhhhhhhhhee
Confidence            4567778888889999999999988777666555554443332         11111   00000111111223445889


Q ss_pred             ccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHhhcccCCCCCHHH
Q 011277          410 EIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNVVETKGKSLQE  480 (489)
Q Consensus       410 e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~et~~~~~~e  480 (489)
                      +.-.++.|...+|+.+..-..+..++|..........+....+.+-.+..++..++....+||+..++.++
T Consensus       139 dis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~  209 (463)
T KOG2816|consen  139 DISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKERS  209 (463)
T ss_pred             eccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCccccc
Confidence            99999999999999999888888888888877777777777777778888888888888999997766554

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=97.80  E-value=0.022  Score=56.18  Aligned_cols=117  Identities=23%  Similarity=0.254  Sum_probs=65.4

Q ss_pred             HhcCCCcch---HHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCC--chhhHHHHHHHHH
Q 011277          317 KSAGLSSGL---ANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPG--SASLYLSVGGMLM  391 (489)
Q Consensus       317 ~~~~~~~~~---~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~~  391 (489)
                      ...|++...   .-....+..+.|+++..++.+|+|..+.=.++.....++..+..........+  .......+.++..
T Consensus       286 ~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~l~~gi~~  365 (432)
T PF06963_consen  286 KSQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISAYLLLGGIAL  365 (432)
T ss_pred             HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHH
Confidence            334655443   33344567778899999999999987765555554444333322111111111  1122222222222


Q ss_pred             HHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHH
Q 011277          392 FVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFF  434 (489)
Q Consensus       392 ~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~  434 (489)
                      --++ -.+.......+.-|..|++.|++..|+-.+.+++.-.+
T Consensus       366 SR~G-LW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll  407 (432)
T PF06963_consen  366 SRIG-LWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELL  407 (432)
T ss_pred             HHHH-HHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHH
Confidence            2121 11223334456789999999999999999998875544

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=97.76  E-value=1.2e-05  Score=78.53  Aligned_cols=137  Identities=20%  Similarity=0.122  Sum_probs=110.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhcchHHHHHHHHHHHhhhccccccccccccc
Q 011277           88 LAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVT  167 (489)
Q Consensus        88 ~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~  167 (489)
                      ...|.....-..|-.+.-++.+++.+|+|+-+++.+++.++.+=-+.....+|.|..+-..++||+..+..+.....|++
T Consensus       406 ~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliWaa~~sY~s  485 (618)
T KOG3762|consen  406 TLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIWAAIISYAS  485 (618)
T ss_pred             eeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHHHHHHHHHH
Confidence            33455555556676777788899999999999999999998887777888999999999999999999999999999999


Q ss_pred             ccCCcccchhhhhHHHH-HHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHHHHHh
Q 011277          168 EVSPPFVRGTYGAFIQI-ATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAM  225 (489)
Q Consensus       168 e~~~~~~Rg~~~~~~~~-~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~i~~~~~~~~~  225 (489)
                      +..||+.|..+.++.+. ...+|--.|.++|+.+.+..+ -|..|...++..++.+++.
T Consensus       486 ~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg-~~ttf~~~giAcl~~l~~~  543 (618)
T KOG3762|consen  486 HVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFG-ARTTFRIFGIACLVTLALF  543 (618)
T ss_pred             hhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeeh-hHHHHHHHHHHHHHHHHHH
Confidence            99999999999888754 445677778888887777665 3888877655555544443

>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]

Probab=97.71  E-value=0.00083  Score=62.37  Aligned_cols=345  Identities=12%  Similarity=0.127  Sum_probs=179.2

Q ss_pred             HHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhcchHHHHHHHHHHHhhhcccccccccccccccCCcccchhhh
Q 011277          100 GAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYG  179 (489)
Q Consensus       100 g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~  179 (489)
                      .+.++-.+.=.+.|..--||+++.-.+...+...+.-+.++.+.+=+.-++-|...+... ..++|+-+..+|+++.++.
T Consensus        54 SYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~FyG~~tAaEI-AYysYIYs~Vd~~~Yqrvt  132 (433)
T KOG3810|consen   54 SYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFYGPATAAEI-AYYSYIYSKVDPEMYKRVT  132 (433)
T ss_pred             HHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCCchheeeehhhcChHHHHHH-hhhheeeeecCHHHHHHHH
Confidence            334444556678999988999999888888888888899999999999999998776554 6778899999999999999


Q ss_pred             hHHHHHHHHHHHHHHHhhcccccCCch-hHHHHHHHHHHHHHHHHHhhhccCChHHHHhcCCHHHHH-HHHHHHhCCCch
Q 011277          180 AFIQIATCLGLMGSLLIGIPVKEIAGW-WRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAE-AEFEKLLGGSHV  257 (489)
Q Consensus       180 ~~~~~~~~~G~~~g~~~~~~l~~~~~~-wr~~f~~~~i~~~~~~~~~~~~~Esp~~l~~~~~~~~~~-~~~~~~~~~~~~  257 (489)
                      +.--.+...|-..|.+.+-.+.....+ ....-.+......+..+...++|.-+|-+..+.++++.. .+.+........
T Consensus       133 ~y~RaA~L~g~~~g~vlaQlLvs~~~~sy~~LN~ISL~~~~ia~~~A~fLP~v~rSl~f~~~~~~~~v~~~e~~~~~~~~  212 (433)
T KOG3810|consen  133 GYCRAAFLVGKFVGSVLAQLLVSLETLSYTTLNYISLAEVTIAVLLALFLPRVKRSLYFHRLEDKISVGDLEEMNPQASY  212 (433)
T ss_pred             HHhHHHHHHHhHHHhHHHHHHhhhcccchhhhchhhHHHHHHHHHHHhhCCCCchhhhhhcccccceeccchhcCccchh
Confidence            998888888887777776555433211 233333443333344455566776665444433333211 111111000000


Q ss_pred             hHHHHHHHhhccCCCCcchhHHHhhhccchhHHHHHHHHHHHHhhhhHHHHHHhHHHHHHhcC-CC----cchHHHHHHH
Q 011277          258 KSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAG-LS----SGLANVFVGI  332 (489)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~i  332 (489)
                      .+..++...      .-...+.+..++++    .....+++....++++-..+|.+..-+... -+    -|..-....+
T Consensus       213 ~~~l~~~~~------~l~~~l~~~y~np~----ll~WSlWwAl~scg~~QV~nY~Q~LW~~~~~~~~~vyNG~veAv~tl  282 (433)
T KOG3810|consen  213 MSYLRGAFV------LLWRDLQECYSNPR----LLKWSLWWALASCGYYQVTNYTQILWKEVAPNPANVYNGAVEAVSTL  282 (433)
T ss_pred             hHHHHHHHH------HHHHHHHHHhcCch----hhhhHHHHHHhhchhHHHHHHHHHHHHhhCCCchhhhcCHHHHHHHH
Confidence            000000000      00001122222222    222334444444555666677776666542 11    1333344455


Q ss_pred             HHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccC
Q 011277          333 ANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIF  412 (489)
Q Consensus       333 ~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~  412 (489)
                      ...++.+..|.+--.+.|..-+.++......+..++....+.      ..|.+-.+.++|...|.+...-... -+++..
T Consensus       283 LGa~~~~~~g~l~i~w~r~g~~ll~~~s~~~agllf~m~~t~------~Iw~~Ya~yvlfr~~y~l~itiA~~-~iA~nL  355 (433)
T KOG3810|consen  283 LGAIAALAAGYLNINWNRWGDLLLAVGSAVQAGLLFIMAQTQ------HIWVCYAGYVLFRVIYQLTITIATF-QIARNL  355 (433)
T ss_pred             HHHHHHHHHHheeeccchhhHHHHHHHHHHhhhhhhhhhccc------ceehhhhhHHHHHhhHhhhhhHHHH-HHHHhh
Confidence            666777888888666666533333322222222222222211      1233333444454444433222222 233333


Q ss_pred             CchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----------CchhhHHHHHHHHHHHHH
Q 011277          413 PSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLG-----------PQLLYSIFGTFCLMAVAF  465 (489)
Q Consensus       413 p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g-----------~~~~~~~~~~~~~~~~~~  465 (489)
                      ..+.-|-..|+..++.-+...+.+.+.   .|.-|           +..-|.+.+++.++....
T Consensus       356 ~~e~~gLvFGiNTFvAl~lQsilT~iV---vd~~g~~L~ir~Q~~~Y~~Yf~v~~~i~~~~~~~  416 (433)
T KOG3810|consen  356 SSELFGLVFGINTFVALILQSILTLIV---VDDRGLGLDIRTQFVVYSSYFIVLGVIFLIGFGI  416 (433)
T ss_pred             hhhhheeeeehHHHHHHHHHHhheEEE---EcccccCCCcceeEEEEeehHHHHHHHHHHHHHH
Confidence            455555555655554443333333221   12111           123466677777666543

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=97.70  E-value=0.07  Score=53.42  Aligned_cols=111  Identities=6%  Similarity=-0.083  Sum_probs=74.4

Q ss_pred             HHHHHHHHHHHHHHH-HHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhc--c--h------------------------
Q 011277           90 EGLVVSMCLGGAFIG-STLSGWIADGVGRRRAFQLCALPMIIGASISATT--R--N------------------------  140 (489)
Q Consensus        90 ~~~~~s~~~~g~~ig-~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~--~--~------------------------  140 (489)
                      ..++-+...+...+. .++.+++++|++|++++......+...-.+.++.  +  +                        
T Consensus        45 i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~  124 (472)
T TIGR00769        45 IPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIA  124 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHH
Confidence            345555555555555 7889999999999999988777776655554433  1  0                        


Q ss_pred             ---HHHHHHHHHHHhhhcccccc-cccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhccc
Q 011277          141 ---LIGMLLGRFVVGTGMGLGPT-VAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPV  200 (489)
Q Consensus       141 ---~~~l~~~R~l~G~g~g~~~~-~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l  200 (489)
                         .|...+.-....+-...... +-..+++|.++.+|-.|..++++++.++|.++++.+...+
T Consensus       125 ~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~  188 (472)
T TIGR00769       125 ILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYF  188 (472)
T ss_pred             HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               11111222233333333333 5677899999999999999999999999988777664443

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=97.59  E-value=0.00055  Score=66.01  Aligned_cols=97  Identities=15%  Similarity=0.208  Sum_probs=68.5

Q ss_pred             HHHHHhhHhhhh----hchhhHHHHHhHHHH-HHHHHHHhhcchHHHHH------------HHHHHHh-----hhccccc
Q 011277          102 FIGSTLSGWIAD----GVGRRRAFQLCALPM-IIGASISATTRNLIGML------------LGRFVVG-----TGMGLGP  159 (489)
Q Consensus       102 ~ig~~~~g~l~D----r~GRr~~~~~~~~~~-~i~~~l~~~~~~~~~l~------------~~R~l~G-----~g~g~~~  159 (489)
                      .+-+++.|..+|    ||||||.++...... .++.++...+.++..++            +.-++.|     ++.-...
T Consensus        81 ~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~q  160 (498)
T KOG0637|consen   81 LLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQ  160 (498)
T ss_pred             ceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhh
Confidence            366888999999    599999888765544 55555666665544322            2223333     4444566


Q ss_pred             ccccccccccCCcccchh-hhhHHHHHHHHHHHHHHHhhc
Q 011277          160 TVAALYVTEVSPPFVRGT-YGAFIQIATCLGLMGSLLIGI  198 (489)
Q Consensus       160 ~~~~~~i~e~~~~~~Rg~-~~~~~~~~~~~G~~~g~~~~~  198 (489)
                      ..+.++++|.+..+++.+ +.+++.....+|..+|...|.
T Consensus       161 gp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~  200 (498)
T KOG0637|consen  161 GPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGS  200 (498)
T ss_pred             hhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeeccc
Confidence            678899999998777766 999999999988887777765

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=97.49  E-value=0.016  Score=56.19  Aligned_cols=123  Identities=15%  Similarity=0.099  Sum_probs=71.9

Q ss_pred             HHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhcchHHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhH
Q 011277          102 FIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAF  181 (489)
Q Consensus       102 ~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~  181 (489)
                      .+-.++..+..+|+.-+.=...+.++.+++-++.++++|.+.-+++=.+.+++.|.....-..+ +..+++.    ..+.
T Consensus        73 l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~l-t~~y~~~----~l~~  147 (402)
T PF02487_consen   73 LLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSL-THFYGKS----SLSA  147 (402)
T ss_pred             HHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHH-HHhcCcc----cccc
Confidence            3445566677787653333445566777888888999999998999999999988877666565 4455543    3444


Q ss_pred             HHHHHHHHHHHHHHhhcccccCCch-hHHHHHHH-HHHHHHHHHHhhhccC
Q 011277          182 IQIATCLGLMGSLLIGIPVKEIAGW-WRICFWVS-IVPAAILCLAMVFCAE  230 (489)
Q Consensus       182 ~~~~~~~G~~~g~~~~~~l~~~~~~-wr~~f~~~-~i~~~~~~~~~~~~~E  230 (489)
                      +..+...+.++|+..=..+.+ .++ -|..+... .+|.+.....++.+|.
T Consensus       148 wssGTG~aGl~Ga~~y~~lT~-~g~s~~~tll~~~~lp~~~~~~~f~~L~~  197 (402)
T PF02487_consen  148 WSSGTGGAGLVGALYYLGLTT-LGLSPRTTLLIMLVLPAIFLLSYFFLLPS  197 (402)
T ss_pred             ccCCcChhhHHHHHHHHHHHH-hCcCHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            555555555555443223333 222 35455443 3443333333334443

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=97.31  E-value=0.039  Score=52.32  Aligned_cols=143  Identities=12%  Similarity=0.084  Sum_probs=83.7

Q ss_pred             HHHHHHHHHhhhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhh-----hchhhHHHHHhH-
Q 011277           52 HVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIAD-----GVGRRRAFQLCA-  125 (489)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~D-----r~GRr~~~~~~~-  125 (489)
                      .+.++.+-..+.|...+... ++|-+.+.-|.|.++.  + +.+....-+ .--+.|.|+.|     |+|||+..+.-. 
T Consensus        32 ~illLl~LYllQGiP~GL~~-~iP~lL~ak~vSyt~~--a-~fS~ay~P~-sLKllWaPiVDs~y~k~~GrrksWvvp~q  106 (510)
T KOG3574|consen   32 SILLLLFLYLLQGIPLGLIG-AIPLLLQAKGVSYTSQ--A-IFSFAYWPF-SLKLLWAPIVDSVYSKRFGRRKSWVVPCQ  106 (510)
T ss_pred             hHHHHHHHHHHcCCchhHhh-hhHHHhcCCCcchhhh--h-hhhhhhhHH-HHHHHHHhhhHHHHHHhhccccceeeehH
Confidence            34444444566677777777 8888887667765542  1 233333332 33578999999     999999865322 


Q ss_pred             HHHHHHHHHHh-----------hcchHHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHH
Q 011277          126 LPMIIGASISA-----------TTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSL  194 (489)
Q Consensus       126 ~~~~i~~~l~~-----------~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~  194 (489)
                      .+.+....+.+           ..++...+...-++.=+.++..-...-.....+-.+++-|.++....++...|.+.+.
T Consensus       107 ~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~GyfL~~  186 (510)
T KOG3574|consen  107 YLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTAGYFLGN  186 (510)
T ss_pred             HHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhhHHhhc
Confidence            12111111111           1233333333334444444444444555666677788899998888888888887776


Q ss_pred             Hhhcc
Q 011277          195 LIGIP  199 (489)
Q Consensus       195 ~~~~~  199 (489)
                      .+-..
T Consensus       187 ~ifLa  191 (510)
T KOG3574|consen  187 VVFLA  191 (510)
T ss_pred             ceeeE
Confidence            66443

>PF12832 MFS_1_like: MFS_1 like family

Probab=97.29  E-value=0.00095  Score=48.46  Aligned_cols=61  Identities=26%  Similarity=0.353  Sum_probs=49.1

Q ss_pred             cceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHH
Q 011277           66 HLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPM  128 (489)
Q Consensus        66 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~  128 (489)
                      ..+...|.+|...++.|++.  .+.|.+.++..+...++++++|.++||+||++..+....++
T Consensus        15 ~~g~~~Pfl~~~~~~~Gl~~--~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~   75 (77)
T PF12832_consen   15 ALGCLYPFLPLYLKQLGLSP--SQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM   75 (77)
T ss_pred             HHHHHHhhhhHhhhhcCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence            34456677777888878764  46789999999999999999999999999999887765543

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=97.28  E-value=0.0023  Score=64.36  Aligned_cols=144  Identities=16%  Similarity=0.089  Sum_probs=95.8

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccc
Q 011277          323 SGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGP  402 (489)
Q Consensus       323 ~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  402 (489)
                      -+.......++..++.+.++.+.||++..+.+....+..++..++.....+      .  ...+..-++.+..-+. ..|
T Consensus        83 l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s------~--~~~ialr~llGl~es~-~wP  153 (495)
T KOG2533|consen   83 LGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVHS------F--PGLIALRFLLGLFESG-GWP  153 (495)
T ss_pred             hhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhh------h--HHHHHHHHHHHHHhcc-cch
Confidence            345667788999999999999999999555443322222221111111110      1  1111222223333333 346


Q ss_pred             cccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH------HhCCchhhHHHHHHHHHHHHHHHhhcccCCC
Q 011277          403 VPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLE------QLGPQLLYSIFGTFCLMAVAFVKRNVVETKG  475 (489)
Q Consensus       403 ~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~------~~g~~~~~~~~~~~~~~~~~~~~~~~~et~~  475 (489)
                      ....++..-|.++.|++-+|+-+....+++++++++...++.      ..||++.|++-|++.+...+++++.+|+-.-
T Consensus       154 ~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~  232 (495)
T KOG2533|consen  154 GVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPS  232 (495)
T ss_pred             HHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCChh
Confidence            666688999999999999999999999999999987665432      3578999999999999988888777776443

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=97.23  E-value=0.0054  Score=58.97  Aligned_cols=120  Identities=17%  Similarity=0.214  Sum_probs=94.9

Q ss_pred             hhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhh-hchhhHHHHHhHHHHHHHHHH---HhhcchHHHHHHHHHHHhh
Q 011277           78 SLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIAD-GVGRRRAFQLCALPMIIGASI---SATTRNLIGMLLGRFVVGT  153 (489)
Q Consensus        78 ~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~D-r~GRr~~~~~~~~~~~i~~~l---~~~~~~~~~l~~~R~l~G~  153 (489)
                      .+-||++..+.  .-..+.+..|..+|-...|++.. |.++|+.-.+++.+..++-.+   ++...+.+.+..+-++.|+
T Consensus       236 g~Vfgmsv~eT--T~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G~  313 (403)
T PF03209_consen  236 GEVFGMSVGET--TRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLGL  313 (403)
T ss_pred             hHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence            34567765543  46778888898999999998777 788887776776666555433   4556778888899999999


Q ss_pred             hcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcc
Q 011277          154 GMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIP  199 (489)
Q Consensus       154 g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~  199 (489)
                      +.|.........+-|..++++-|.+++.++..+.++..++.+.|+.
T Consensus       314 g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~  359 (403)
T PF03209_consen  314 GNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGA  359 (403)
T ss_pred             hhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999988888889999999999999999999998887777777654

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=97.16  E-value=0.0056  Score=59.23  Aligned_cols=115  Identities=18%  Similarity=0.147  Sum_probs=73.2

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccc
Q 011277          323 SGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGP  402 (489)
Q Consensus       323 ~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  402 (489)
                      ..+.++++.+..++-.+.+.|+.||+|-|....++.....++..+=........++.....+.+.+-..-......-.+ 
T Consensus        81 ~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~-  159 (480)
T KOG2563|consen   81 ADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILG-  159 (480)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhc-
Confidence            3467788888899999999999999999999999888888877765444333222222211222222222222111111 


Q ss_pred             cccccccccCCchhhhhHHHHHHHHHHHHHHHHHHH
Q 011277          403 VPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLL  438 (489)
Q Consensus       403 ~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~  438 (489)
                      ++.-...--||+++|+++..+..+.+.+|..++..+
T Consensus       160 lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~ll  195 (480)
T KOG2563|consen  160 LPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLL  195 (480)
T ss_pred             cccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhc
Confidence            222234456899999999999998888777665543

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=97.05  E-value=0.021  Score=59.79  Aligned_cols=130  Identities=13%  Similarity=0.144  Sum_probs=77.3

Q ss_pred             HHHHHHHHHHhhh-cCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCC
Q 011277          335 LLGSVVAMVLMDK-LGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFP  413 (489)
Q Consensus       335 ~~g~~~~g~l~dr-~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p  413 (489)
                      -+..+++|++.|+ +||++.+..+.++..++..++...................++.+ +....-+.-|...+...|.++
T Consensus        37 yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaL-ia~G~GgiKp~vsaf~gdqf~  115 (654)
T TIGR00926        37 YLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLAL-IALGTGGIKPCVSAFGGDQFE  115 (654)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHH-HHhhccccccCchhhhHhhcC
Confidence            3556678899997 69999888887777777665543221111011111111112111 111122233666677788886


Q ss_pred             ch---hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh-------CCchhhHHHHHHHHHHHHH
Q 011277          414 SR---IRAKAMAVCMSVHWVINFFVGLLFLRLLEQL-------GPQLLYSIFGTFCLMAVAF  465 (489)
Q Consensus       414 ~~---~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------g~~~~~~~~~~~~~~~~~~  465 (489)
                      ++   .|.+...+.....++++.+++.+.+.+.+..       ++...|.+.+++.+++.+.
T Consensus       116 ~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lv  177 (654)
T TIGR00926       116 ERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIV  177 (654)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHH
Confidence            43   4777888888889999998888777665433       4566777666666555443

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=96.80  E-value=0.16  Score=48.25  Aligned_cols=154  Identities=14%  Similarity=0.103  Sum_probs=78.4

Q ss_pred             HHHHhcCCCc---chHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHH
Q 011277          314 SVFKSAGLSS---GLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGML  390 (489)
Q Consensus       314 ~~~~~~~~~~---~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  390 (489)
                      ..|++.++..   +..+........+...+.|.+.||+|||+.-+...++..++++....      +...   ..+.+-+
T Consensus        59 ~LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k~~------~~~~---~L~~GRv  129 (354)
T PF05631_consen   59 ALYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTKHS------SNYP---VLLLGRV  129 (354)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhc------cccH---HHHHHHH
Confidence            3455666653   34444555566666677889999999999776666666665543211      1111   1111111


Q ss_pred             HHHHHHhcCcc----ccccccccccCCchhhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHh--CCchhhHHHHHHHHHHH
Q 011277          391 MFVLTFALGAG----PVPSLLLPEIFPSRIRAKAMAVCMSV-HWVINFFVGLLFLRLLEQL--GPQLLYSIFGTFCLMAV  463 (489)
Q Consensus       391 ~~~~~~~~~~~----~~~~~~~~e~~p~~~r~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~--g~~~~~~~~~~~~~~~~  463 (489)
                      +.++..++-..    =+....-..=+|.+..+...+..... +.+.+++++.+...+.+..  |+..+|..-..+.+++.
T Consensus       130 lgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~  209 (354)
T PF05631_consen  130 LGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAA  209 (354)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHH
Confidence            11111110000    00011112335666556655554433 3344555565555555554  44677776666666666


Q ss_pred             HHHHhhcccCCCC
Q 011277          464 AFVKRNVVETKGK  476 (489)
Q Consensus       464 ~~~~~~~~et~~~  476 (489)
                      +++...=+|..|.
T Consensus       210 ~~I~~~W~ENyg~  222 (354)
T PF05631_consen  210 VLILKTWPENYGD  222 (354)
T ss_pred             HHHHhcccccCCC
Confidence            6665555666554

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=96.75  E-value=0.011  Score=58.51  Aligned_cols=132  Identities=16%  Similarity=0.212  Sum_probs=78.4

Q ss_pred             chHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCcccc
Q 011277          324 GLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPV  403 (489)
Q Consensus       324 ~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  403 (489)
                      |......-.+.++..++.+++++|+|+-+++..++....+=.+.+.....        .|..+..=++-.+.++.-+. .
T Consensus       409 Gv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n--------~W~vLPieilqgit~aliWa-a  479 (618)
T KOG3762|consen  409 GVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQN--------PWMVLPIEILQGITHALIWA-A  479 (618)
T ss_pred             eehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcC--------chheeeHHHHHHHHHHHHHH-H
Confidence            45555666788888899999999999988876665444333332222211        11111111222222222111 2


Q ss_pred             ccccccccCCchhhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHH
Q 011277          404 PSLLLPEIFPSRIRAKAMAVCMSVHW-VINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVA  464 (489)
Q Consensus       404 ~~~~~~e~~p~~~r~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~  464 (489)
                      ...|++...|++.|++++++...... +|-.++.++.+.+....|....|-++++.|++..+
T Consensus       480 ~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~  541 (618)
T KOG3762|consen  480 IISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLA  541 (618)
T ss_pred             HHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHH
Confidence            23488899999999999999876643 23444555555555667766777777776655543

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=96.65  E-value=0.047  Score=54.58  Aligned_cols=155  Identities=22%  Similarity=0.225  Sum_probs=86.1

Q ss_pred             HHhcCCCcchHHHHHHHHHH--HHHHHHHHHhhhcC-----CchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHH
Q 011277          316 FKSAGLSSGLANVFVGIANL--LGSVVAMVLMDKLG-----RKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGG  388 (489)
Q Consensus       316 ~~~~~~~~~~~~~~~~i~~~--~g~~~~g~l~dr~g-----rr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  388 (489)
                      .++.+.+.........+..+  ...++.|.++|-+.     ||+-+.++.++..++...+....... . ....  ....
T Consensus        17 ~~~l~ls~~~~~~~~~~~~lPw~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~-~-s~~~--~~~~   92 (433)
T PF03092_consen   17 KDDLGLSPAQLQRLSSLASLPWSIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASE-S-SAAI--AVVL   92 (433)
T ss_pred             HHHcCCCHHHHHHHHHHHhCchHHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhccccc-c-hhhh--HHHH
Confidence            34566665555555555555  35578899999873     44555555554443333333222111 1 1111  1111


Q ss_pred             HHHHHHHHhcCccccccccccccC---CchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHH
Q 011277          389 MLMFVLTFALGAGPVPSLLLPEIF---PSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAF  465 (489)
Q Consensus       389 ~~~~~~~~~~~~~~~~~~~~~e~~---p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~  465 (489)
                      +++..+++.+. ..+.-...+|..   |.+ |+.-++.+.....+++.++..+.+++.+..++...|.+.+.+..+..+.
T Consensus        93 l~la~~g~a~~-DV~aDa~vvE~~~~~p~~-~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~~~  170 (433)
T PF03092_consen   93 LFLASFGYAFA-DVAADALVVELARREPES-RGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLMLIV  170 (433)
T ss_pred             HHHHHHHHHHH-HHhhhHHHHHHhhcCCch-hHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHHHH
Confidence            11112222211 111222344443   555 8888999988888898888888888888888888888777776666555


Q ss_pred             HHhhcccCCCC
Q 011277          466 VKRNVVETKGK  476 (489)
Q Consensus       466 ~~~~~~et~~~  476 (489)
                      .....+|.+.+
T Consensus       171 ~~~~~~e~~~~  181 (433)
T PF03092_consen  171 ALFLLEERKVR  181 (433)
T ss_pred             HHHhhhhcccc
Confidence            55566664433

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=96.64  E-value=0.61  Score=45.25  Aligned_cols=32  Identities=3%  Similarity=-0.151  Sum_probs=21.8

Q ss_pred             hHHHHHHHHHHHhhhcccccccccccccccCC
Q 011277          140 NLIGMLLGRFVVGTGMGLGPTVAALYVTEVSP  171 (489)
Q Consensus       140 ~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~  171 (489)
                      .+...++.-.+.+.+.|..........++.-+
T Consensus       116 ff~vt~~~vv~~~~a~a~~qgs~~G~a~~~P~  147 (406)
T KOG1479|consen  116 FFLVTLIIVVLLNLANAVVQGSLYGLAGLFPS  147 (406)
T ss_pred             hHHHHHHHHHHHhhhhhhhccchhhhhhcCCH
Confidence            45566677788888888777776666665543

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=96.10  E-value=0.022  Score=55.77  Aligned_cols=105  Identities=11%  Similarity=0.154  Sum_probs=78.2

Q ss_pred             HHHHHhHHHHHHHHHHHhhc---ch------HHHHHHHHHHHhhhcccccccccccccccCCccc---chhhhhHHHHHH
Q 011277          119 RAFQLCALPMIIGASISATT---RN------LIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFV---RGTYGAFIQIAT  186 (489)
Q Consensus       119 ~~~~~~~~~~~i~~~l~~~~---~~------~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~---Rg~~~~~~~~~~  186 (489)
                      +++.++.+++.+|.++...+   .+      ...+.++-.+.++|.|+.=+....+.+|.+++++   |.....++..+.
T Consensus         2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i   81 (372)
T PF00854_consen    2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI   81 (372)
T ss_dssp             HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence            45677888888888873332   22      2568888999999999999999999999998763   556777888999


Q ss_pred             HHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHHHHH
Q 011277          187 CLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLA  224 (489)
Q Consensus       187 ~~G~~~g~~~~~~l~~~~~~wr~~f~~~~i~~~~~~~~  224 (489)
                      ++|.+++......+.+..+ |.+.|++..+..++.++.
T Consensus        82 n~G~~~~~~~~~~i~~~~~-~~~~f~i~~~~~~~~~~~  118 (372)
T PF00854_consen   82 NIGSLFSPTLVPYIQQNYG-WFLGFGIPAIGMLLALIV  118 (372)
T ss_dssp             HHHHHHHHHCCCHHHHCS--HHHHHHHHHHHHHHHHHH
T ss_pred             hhhhHhhcccchhhccccc-hhhhhhHHHHHHHHHHHH
Confidence            9999999888888877777 588888765544444443

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=96.09  E-value=0.088  Score=52.41  Aligned_cols=144  Identities=15%  Similarity=0.154  Sum_probs=86.8

Q ss_pred             chHHHHHHHHHHHHHHHHHHHhhhcCC-chhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccc
Q 011277          324 GLANVFVGIANLLGSVVAMVLMDKLGR-KALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGP  402 (489)
Q Consensus       324 ~~~~~~~~i~~~~g~~~~g~l~dr~gr-r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  402 (489)
                      |+......++..+++++.++...|.+. |+.++.+.+++.++.++.....  +.+.. ..++.+.+-++  .+.+.+...
T Consensus        74 G~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~--~~~~~-~~y~mL~~R~l--~Gvg~~n~a  148 (488)
T KOG2325|consen   74 GLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALA--YVPNG-VKYLMLVARIL--TGVGVGNFA  148 (488)
T ss_pred             hHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHH--hcccc-hHHHHHHHHHH--cCcCcccHH
Confidence            566667789999999999999999885 6667788888888887763332  12222 23332222222  233333444


Q ss_pred             cccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------------CchhhHHHHHHHHHHHHHHHh
Q 011277          403 VPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLG--------------PQLLYSIFGTFCLMAVAFVKR  468 (489)
Q Consensus       403 ~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g--------------~~~~~~~~~~~~~~~~~~~~~  468 (489)
                      ....|.++.--.+.|.++++......-++..++|.+ ...+..++              +..+-.+++++.++..+++..
T Consensus       149 ~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~-q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~  227 (488)
T KOG2325|consen  149 VLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTI-QLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILF  227 (488)
T ss_pred             HHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHH-HHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHh
Confidence            566788887667888888888776444555555543 22222111              123344566666666666666


Q ss_pred             hcccC
Q 011277          469 NVVET  473 (489)
Q Consensus       469 ~~~et  473 (489)
                      +.+|-
T Consensus       228 ~f~E~  232 (488)
T KOG2325|consen  228 FFKEV  232 (488)
T ss_pred             heeec
Confidence            66653

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=95.97  E-value=0.79  Score=45.57  Aligned_cols=140  Identities=15%  Similarity=0.097  Sum_probs=72.0

Q ss_pred             HHHHhhhhccceeeccchhhhhhh--cCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhh-----hchhhHHHHHhHH---
Q 011277           57 TLSSFLFGYHLGVVNEPLESISLD--LGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIAD-----GVGRRRAFQLCAL---  126 (489)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~i~~~--~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~D-----r~GRr~~~~~~~~---  126 (489)
                      .+-.++.|.-.+.....+|-+.++  -+.+.++.  + +.|+...-+. --++|.|+.|     |+||||..++-.=   
T Consensus         6 ~~LY~lQGiP~GL~~gsiPflL~~~~~~~sy~q~--~-~fSla~~PfS-lKlLWaPiVDs~y~~~~GRRKSWiiP~Q~l~   81 (544)
T PF13000_consen    6 VLLYFLQGIPLGLAFGSIPFLLQSMAKKVSYSQQ--A-IFSLASYPFS-LKLLWAPIVDSVYSKRIGRRKSWIIPIQYLS   81 (544)
T ss_pred             HHHHHHcCcccccccccchhhhccccCCCChhHh--e-eeeeeechhH-HHHhhhhhhhhhcccccCCcchhhhHHHHHH
Confidence            334466677777766677777666  34554432  2 1222211221 2356666666     8999999765332   


Q ss_pred             ---HHHHHHHH----------Hhh-------cchHH--HHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHH
Q 011277          127 ---PMIIGASI----------SAT-------TRNLI--GMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQI  184 (489)
Q Consensus       127 ---~~~i~~~l----------~~~-------~~~~~--~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~  184 (489)
                         +..++.-.          -..       ..+..  .+...-++.=+-.+-.-...-...-.+..++.++.++.-..+
T Consensus        82 g~~m~~l~~~i~~~~~~~~~~d~~~~~~~~~~~~~~i~~Lt~~F~~L~fl~ATQDIAVDGWALT~Ls~~n~~~ASTcqtv  161 (544)
T PF13000_consen   82 GILMLYLSYNISQWLLFDGVDDALLGQGESTVNNITIKFLTWFFFILVFLCATQDIAVDGWALTMLSPENVGYASTCQTV  161 (544)
T ss_pred             HHHHHHHHhccchhhcccccchhhhcCCCCcccccchhHHHHHHHHHHHHHccCCceeehhhhhhcChhhcchHHHHHHh
Confidence               22222211          000       00111  112222112122222223444555566678889999888888


Q ss_pred             HHHHHHHHHHHhhccc
Q 011277          185 ATCLGLMGSLLIGIPV  200 (489)
Q Consensus       185 ~~~~G~~~g~~~~~~l  200 (489)
                      +...|..++..+...+
T Consensus       162 G~~~Gyfls~tvFlal  177 (544)
T PF13000_consen  162 GQTAGYFLSFTVFLAL  177 (544)
T ss_pred             HhhhhHHHHHHHHHhh
Confidence            8888887776664433

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=95.75  E-value=0.048  Score=53.04  Aligned_cols=106  Identities=20%  Similarity=0.199  Sum_probs=75.7

Q ss_pred             HHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHH-----HHHHHhhcchHHHHHHHHHHHhhhccccccccccc
Q 011277           91 GLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMII-----GASISATTRNLIGMLLGRFVVGTGMGLGPTVAALY  165 (489)
Q Consensus        91 ~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i-----~~~l~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~  165 (489)
                      -+-...|.+|-.++---...+  |+  |++.+.+.+-..-     ...+.-+.++.+.+++.-+..|+-.|..+......
T Consensus       284 ~~Y~~~YQ~GVFISRSS~~~~--ri--r~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~YVNtF~~  359 (402)
T PF02487_consen  284 RWYQLLYQLGVFISRSSLPFF--RI--RRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASYVNTFYR  359 (402)
T ss_pred             HHHHHHHHHHHhhhhcceeee--eh--hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            345555666654442221111  33  4555554443322     22233356888988899999999999999999999


Q ss_pred             ccccCCcccchhhhhHHHHHHHHHHHHHHHhhccc
Q 011277          166 VTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPV  200 (489)
Q Consensus       166 i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l  200 (489)
                      +.|-.|+++|...++..+++-++|..++.+++.++
T Consensus       360 I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~l  394 (402)
T PF02487_consen  360 ISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPL  394 (402)
T ss_pred             HHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            99999999999999999999999999998888654

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=95.72  E-value=0.35  Score=49.87  Aligned_cols=147  Identities=17%  Similarity=0.257  Sum_probs=104.2

Q ss_pred             eccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhh-hchhhHHHHHhHHHHHHHHHHHhhcc---------
Q 011277           70 VNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIAD-GVGRRRAFQLCALPMIIGASISATTR---------  139 (489)
Q Consensus        70 ~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~D-r~GRr~~~~~~~~~~~i~~~l~~~~~---------  139 (489)
                      ....+..+.+++|.+..  ...-.++.+..-....++..++++| .+||=+++.++.++..+|.++...+.         
T Consensus        57 ~~nlv~ylt~~~~~~~~--~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~  134 (571)
T KOG1237|consen   57 VSNLVTYLTLELHASGG--GAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFM  134 (571)
T ss_pred             hhHHHHHHHHHhccchH--HHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcc
Confidence            34455667778887653  3345677777777788899999999 58999999999998888755432211         


Q ss_pred             ----------------hHHHHHHHHHHHhhhcccccccccccccccCC---ccc-ch--hhhhHHHHHHHHHHHHHHHhh
Q 011277          140 ----------------NLIGMLLGRFVVGTGMGLGPTVAALYVTEVSP---PFV-RG--TYGAFIQIATCLGLMGSLLIG  197 (489)
Q Consensus       140 ----------------~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~---~~~-Rg--~~~~~~~~~~~~G~~~g~~~~  197 (489)
                                      ....+..+..+..+|.|+.-+....+-+|-++   +++ +.  ....++.....+|.+++..+-
T Consensus       135 ~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~  214 (571)
T KOG1237|consen  135 CKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVL  214 (571)
T ss_pred             ccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHH
Confidence                            11245567777888999988888899999998   322 23  577888888899988877776


Q ss_pred             cccccCCchhHHHHHHHHHHHH
Q 011277          198 IPVKEIAGWWRICFWVSIVPAA  219 (489)
Q Consensus       198 ~~l~~~~~~wr~~f~~~~i~~~  219 (489)
                      ....+..+ |.+-|.+......
T Consensus       215 vyiq~~~~-w~lgf~i~~~~~~  235 (571)
T KOG1237|consen  215 VYIQDNVG-WKLGFGIPTVLNA  235 (571)
T ss_pred             Hhhhhccc-ceeeccHHHHHHH
Confidence            66666666 5877776543333

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=95.57  E-value=2.9  Score=41.81  Aligned_cols=90  Identities=14%  Similarity=0.054  Sum_probs=46.0

Q ss_pred             hHHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhc----ccccCC-chhH--HHHH
Q 011277          140 NLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGI----PVKEIA-GWWR--ICFW  212 (489)
Q Consensus       140 ~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~----~l~~~~-~~wr--~~f~  212 (489)
                      .++..++.-++.|++.|.......++.+ .+|++    .+..+..+.+++.+++.++-.    ...+.. ..++  ..|.
T Consensus       105 ~f~~~~~~v~~~g~~~~~~q~s~~gla~-~fp~~----~~~a~~~G~g~aGv~~s~~~ii~~a~~~~~~~~~~~a~~YF~  179 (437)
T TIGR00939       105 FFVTTMASVVIINSGMALLQGSLFGLAG-VFPST----YSSAVMSGQGLAGVLTSLAMILVKASGNDSHGLKKSALGYFG  179 (437)
T ss_pred             HHHHHHHHHHHHHhhhhhhcccchhhcc-cCCHH----HHHHHHhcchhHHHHHHHHHHHHHHhcCCccchhhhhhhHHH
Confidence            4666677778899998888877777666 55554    333334444443333322211    111100 1122  3344


Q ss_pred             HHHHHHHHHHHHhhhccCChHH
Q 011277          213 VSIVPAAILCLAMVFCAESPHW  234 (489)
Q Consensus       213 ~~~i~~~~~~~~~~~~~Esp~~  234 (489)
                      +..+..++.++....++.+|..
T Consensus       180 ~a~~v~l~~i~~~~~l~k~~~~  201 (437)
T TIGR00939       180 TPCVVQLICIVCYLLLPKLPFA  201 (437)
T ss_pred             HHHHHHHHHHHHHHHHhcCHHH
Confidence            4444444444555566777654

>PRK03612 spermidine synthase; Provisional

Probab=95.57  E-value=0.25  Score=50.58  Aligned_cols=131  Identities=15%  Similarity=0.052  Sum_probs=65.9

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHH-HHH-HHHHHH----hhcchH-HHHHHHHHHHhhhcc
Q 011277           84 NGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCAL-PMI-IGASIS----ATTRNL-IGMLLGRFVVGTGMG  156 (489)
Q Consensus        84 ~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~-~~~-i~~~l~----~~~~~~-~~l~~~R~l~G~g~g  156 (489)
                      +.+..+++.+.+.++.|.++|+.+.+++.++--|+....-..+ +.+ +...+.    +....+ ..+...-++.|+..|
T Consensus        46 G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~G  125 (521)
T PRK03612         46 GDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFVAVELLLALLGGLSALILYAAFAFQGLSRLLLYVLVLLIGLLIG  125 (521)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445567899999999999999999988754434332221111 111 011011    111111 112334556677778


Q ss_pred             cccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhh-cccccCCchhHHHHHHHH
Q 011277          157 LGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIG-IPVKEIAGWWRICFWVSI  215 (489)
Q Consensus       157 ~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~-~~l~~~~~~wr~~f~~~~  215 (489)
                      +..|....+..+.... +-|...+-......+|.++|.++. ..+....|-++..+.++.
T Consensus       126 ~~~Pl~~~~~~~~~~~-~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~  184 (521)
T PRK03612        126 MEIPLLMRILQRIRDQ-HLGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGS  184 (521)
T ss_pred             HHHHHHHHHHHhcccc-chhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence            7777765555443221 123334444455555555554443 233333343455555443

>PF12832 MFS_1_like: MFS_1 like family

Probab=95.53  E-value=0.1  Score=37.83  Aligned_cols=48  Identities=23%  Similarity=0.367  Sum_probs=34.8

Q ss_pred             HhHHHHHHhcCCCc---chHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHh
Q 011277          310 YFSSSVFKSAGLSS---GLANVFVGIANLLGSVVAMVLMDKLGRKALLQWS  357 (489)
Q Consensus       310 ~~~~~~~~~~~~~~---~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~  357 (489)
                      -|.+..+++.|.+.   |......-+..+++.++.|.++||+++++.....
T Consensus        21 Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~   71 (77)
T PF12832_consen   21 PFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLG   71 (77)
T ss_pred             hhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHH
Confidence            34455566677764   4455555677889999999999999998876543

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=95.27  E-value=3.9  Score=41.43  Aligned_cols=101  Identities=11%  Similarity=0.033  Sum_probs=62.8

Q ss_pred             HHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhc---------ch----------------------HHHHHHHH
Q 011277          100 GAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATT---------RN----------------------LIGMLLGR  148 (489)
Q Consensus       100 g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~---------~~----------------------~~~l~~~R  148 (489)
                      ...+...+..+++++++|.+++......+...-.+.++.         ++                      .|...+.-
T Consensus        71 ~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfY  150 (491)
T PF03219_consen   71 VAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFY  150 (491)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHH
Confidence            334556778999999999999988777776654444431         11                      01111111


Q ss_pred             HHHhhhcccccc-cccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhccc
Q 011277          149 FVVGTGMGLGPT-VAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPV  200 (489)
Q Consensus       149 ~l~G~g~g~~~~-~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l  200 (489)
                      ++.-+-...... .-..+.+|.++.+|-.+..++++.+.++|.+++......+
T Consensus       151 v~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~  203 (491)
T PF03219_consen  151 VMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYF  203 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            111111112222 3467889999999999999999999999876555544333

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.07  E-value=1.6  Score=43.55  Aligned_cols=96  Identities=16%  Similarity=0.181  Sum_probs=72.6

Q ss_pred             HHHHHHHhhHhhhh---hchhhHHHHHhHHHHHHHHHHHhhc------------------chHHHHHHHHHHHhhhcccc
Q 011277          100 GAFIGSTLSGWIAD---GVGRRRAFQLCALPMIIGASISATT------------------RNLIGMLLGRFVVGTGMGLG  158 (489)
Q Consensus       100 g~~ig~~~~g~l~D---r~GRr~~~~~~~~~~~i~~~l~~~~------------------~~~~~l~~~R~l~G~g~g~~  158 (489)
                      |..++....+.+++   ++||++.+..+..+..++.++.-..                  +++...++.-++.|++-+..
T Consensus       291 g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D~~~  370 (461)
T KOG3098|consen  291 GEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGDACF  370 (461)
T ss_pred             HHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhhHHHHH
Confidence            44455566677775   6999999999988888877766432                  24556677789999999988


Q ss_pred             cccccccccccCCcccchhhhhHHHHHHHHHHHHHHHh
Q 011277          159 PTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLI  196 (489)
Q Consensus       159 ~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~  196 (489)
                      ......++.+.. +++|..+.+++-.-..++..++.+.
T Consensus       371 ~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~  407 (461)
T KOG3098|consen  371 NTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFF  407 (461)
T ss_pred             HHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhh
Confidence            888888999999 6778888888877777777665554

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=94.00  E-value=1.5  Score=40.55  Aligned_cols=108  Identities=24%  Similarity=0.220  Sum_probs=60.6

Q ss_pred             chHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhc-Cccc
Q 011277          324 GLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFAL-GAGP  402 (489)
Q Consensus       324 ~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  402 (489)
                      +.......+...++.+..|.+.||+|||+.+..+.....++.........     .......+. ...  .+... ...|
T Consensus        42 ~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~-~~~--~g~~~~~~~~  113 (338)
T COG0477          42 GLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPN-----VGLALLLIL-RLL--QGLGGGGLLP  113 (338)
T ss_pred             HHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCcc-----chHHHHHHH-HHH--HHhhhHHHHH
Confidence            45555666777777789999999999997766665442332222111111     011111111 111  11111 2345


Q ss_pred             cccccccccCCc-hhhhhHHHHHHH-HHHHHHHHHHHHH
Q 011277          403 VPSLLLPEIFPS-RIRAKAMAVCMS-VHWVINFFVGLLF  439 (489)
Q Consensus       403 ~~~~~~~e~~p~-~~r~~~~~~~~~-~~~~~~~~~~~~~  439 (489)
                      ....+..|.+|. +.|+...+.... ...++..+++.+.
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (338)
T COG0477         114 VASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLA  152 (338)
T ss_pred             HHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666788899987 678888888777 4555556665433

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=93.99  E-value=3.2  Score=34.76  Aligned_cols=102  Identities=14%  Similarity=0.080  Sum_probs=59.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccc
Q 011277          327 NVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSL  406 (489)
Q Consensus       327 ~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  406 (489)
                      .........+.+++++.+.+++|.|+.+.++.+...+-......      +.   .+..+..-.+.+++.+.-+ .....
T Consensus        43 lai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~~------~~---~~~l~~~s~l~G~~~a~lW-~aqg~  112 (156)
T PF05978_consen   43 LAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASFFY------PN---SYTLYPASALLGFGAALLW-TAQGT  112 (156)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh------hh---HHHHHHHHHHHhhhhHHhh-HhhhH
Confidence            34445566778888899999999999888776655443332221      11   1121122222222222211 12234


Q ss_pred             cccccCCchhhhhHHHHHHHHHHHHHHHHHHH
Q 011277          407 LLPEIFPSRIRAKAMAVCMSVHWVINFFVGLL  438 (489)
Q Consensus       407 ~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~  438 (489)
                      |+.+...++.|++..++...+......+++.+
T Consensus       113 ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~  144 (156)
T PF05978_consen  113 YLTSYSTEETIGRNTGIFWAIFQSSLIFGNLF  144 (156)
T ss_pred             HHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence            67788888899999998888877665555544

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=93.75  E-value=6.1  Score=39.32  Aligned_cols=138  Identities=13%  Similarity=0.055  Sum_probs=66.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHH----HHHHHHHHHHhhccCCC---chhhHHHHHHHHHHHHH---
Q 011277          326 ANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSM----AVSMAIQVAASSSYIPG---SASLYLSVGGMLMFVLT---  395 (489)
Q Consensus       326 ~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~----~i~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~---  395 (489)
                      ..+...+..++.+..-|.+.||..|.+......+..    ++++.++..........   .............+...   
T Consensus        43 ygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~L  122 (432)
T PF06963_consen   43 YGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIERL  122 (432)
T ss_pred             HHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHH
Confidence            334455566666667788999999988766554432    23333322221111110   11111112222222221   


Q ss_pred             HhcCcc-ccccccccccC--CchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHH
Q 011277          396 FALGAG-PVPSLLLPEIF--PSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAV  463 (489)
Q Consensus       396 ~~~~~~-~~~~~~~~e~~--p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~  463 (489)
                      .+.+.. .+-.=++..+.  +++..++..+...-+--+...++|.+.+.+.+..++.....+.++..++..
T Consensus       123 as~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckllaPl~vG~l~t~~s~~~~~~~i~~~N~~S~  193 (432)
T PF06963_consen  123 ASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKLLAPLFVGLLMTFASPVIAAIFIAGWNLASV  193 (432)
T ss_pred             HHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHH
Confidence            111111 11111222232  344455555555555555788899988888776776655555555554443

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)

Probab=93.44  E-value=3.2  Score=37.72  Aligned_cols=52  Identities=10%  Similarity=0.018  Sum_probs=29.1

Q ss_pred             ccchhhhhHHHHHHHHHHHHHHHhhccc---cc-CCchhHHHHHHHHHHHHHHHHH
Q 011277          173 FVRGTYGAFIQIATCLGLMGSLLIGIPV---KE-IAGWWRICFWVSIVPAAILCLA  224 (489)
Q Consensus       173 ~~Rg~~~~~~~~~~~~G~~~g~~~~~~l---~~-~~~~wr~~f~~~~i~~~~~~~~  224 (489)
                      ++|+..+.+-..+..+|.++..+.....   .+ ....|++++.+.++..++-++.
T Consensus         2 k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIl   57 (267)
T PF07672_consen    2 KKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLIL   57 (267)
T ss_pred             CccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5677777777778888865544432211   11 1122788887755444443333

>COG3202 ATP/ADP translocase [Energy production and conversion]

Probab=93.22  E-value=9.9  Score=37.97  Aligned_cols=111  Identities=9%  Similarity=-0.047  Sum_probs=69.3

Q ss_pred             HHHHHHHHH-HHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhc---------chH-------------------
Q 011277           91 GLVVSMCLG-GAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATT---------RNL-------------------  141 (489)
Q Consensus        91 ~~~~s~~~~-g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~---------~~~-------------------  141 (489)
                      .++=+.+.+ +..+..++.+++.++.-|.+++-.....+..+-+++++.         +++                   
T Consensus        64 ~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~il  143 (509)
T COG3202          64 SFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFIL  143 (509)
T ss_pred             HHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeE
Confidence            444444444 556777889999999999999988888877777776642         110                   


Q ss_pred             ----HHHHHHHHHHhhhcccccc-cccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccc
Q 011277          142 ----IGMLLGRFVVGTGMGLGPT-VAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVK  201 (489)
Q Consensus       142 ----~~l~~~R~l~G~g~g~~~~-~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~  201 (489)
                          |...+.-.+.=+-...... .-.....|++..+|-.|..+++++..+++.+++..+...+.
T Consensus       144 i~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~  208 (509)
T COG3202         144 IVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLS  208 (509)
T ss_pred             eecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence                1111111111111111111 23445788898899999999999999998766655554443

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=91.57  E-value=2  Score=42.87  Aligned_cols=106  Identities=11%  Similarity=0.054  Sum_probs=74.6

Q ss_pred             HHHHHHHHHHHHHHHhhHhhhhhchhh--HHHH--HhHHHHHHHHHHHhhc---------chHHHHHHHHHHHhhhcccc
Q 011277           92 LVVSMCLGGAFIGSTLSGWIADGVGRR--RAFQ--LCALPMIIGASISATT---------RNLIGMLLGRFVVGTGMGLG  158 (489)
Q Consensus        92 ~~~s~~~~g~~ig~~~~g~l~Dr~GRr--~~~~--~~~~~~~i~~~l~~~~---------~~~~~l~~~R~l~G~g~g~~  158 (489)
                      .....|.+|-.+|-.+..+.. .-++|  .++.  ++-+++.-.-++|..-         ++-+..++.-++.|+..|-.
T Consensus       311 i~~~~fNvgD~vGR~~~~~~~-~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltnGy~  389 (437)
T TIGR00939       311 ICFLLFNLFDWLGRSLTSKFM-WPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSNGYL  389 (437)
T ss_pred             HHHHHHHHHHHHHhhhhheeE-eeCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhhhHH
Confidence            566677888888777554321 11222  3333  2333444444455322         45566777899999999999


Q ss_pred             cccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhc
Q 011277          159 PTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGI  198 (489)
Q Consensus       159 ~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~  198 (489)
                      ...+..+..+..++++|..+..+...+..+|...|..++.
T Consensus       390 ~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~  429 (437)
T TIGR00939       390 GSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSF  429 (437)
T ss_pred             HHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8889899999999999999999999999999988887764

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=91.40  E-value=16  Score=36.83  Aligned_cols=41  Identities=12%  Similarity=-0.119  Sum_probs=36.1

Q ss_pred             cccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 011277          403 VPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLL  443 (489)
Q Consensus       403 ~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~  443 (489)
                      +.|.+.+|++..+...+-.++....++++..+++.+...+.
T Consensus       149 lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~  189 (472)
T TIGR00769       149 LFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFS  189 (472)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66778999999999999999999999999999998765544

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=90.47  E-value=1.3  Score=43.32  Aligned_cols=113  Identities=12%  Similarity=0.011  Sum_probs=66.5

Q ss_pred             hHHHhhHHHHHHHHHHHHHhhccCC-CchhhHHHHHHHHHHHHHHhcCccccccccccccCCch---hhhhHHHHHHHHH
Q 011277          353 LLQWSFFSMAVSMAIQVAASSSYIP-GSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSR---IRAKAMAVCMSVH  428 (489)
Q Consensus       353 ~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~---~r~~~~~~~~~~~  428 (489)
                      .+..+.+...++.+++......... ..........++.+..+ ...+.=|+...+.+|.|+++   .|.+.........
T Consensus         3 tI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~-G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i   81 (372)
T PF00854_consen    3 TILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAV-GTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI   81 (372)
T ss_dssp             HHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHH-HHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHh-ccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence            4556666666666664433322111 11111122222332222 22234466777888888765   4667777778888


Q ss_pred             HHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHH
Q 011277          429 WVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFV  466 (489)
Q Consensus       429 ~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~  466 (489)
                      ++|+.++....+.+.+..|+...|.+.++..+++.+..
T Consensus        82 n~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f  119 (372)
T PF00854_consen   82 NIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVF  119 (372)
T ss_dssp             HHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHH
Confidence            99999888888888788888888888887777766544

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>PRK03612 spermidine synthase; Provisional

Probab=89.03  E-value=9.4  Score=39.19  Aligned_cols=46  Identities=24%  Similarity=0.340  Sum_probs=29.7

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCchhhHHHHHHHHHH
Q 011277          417 RAKAMAVCMSVHWVINFFVGLLFLRLL-EQLGPQLLYSIFGTFCLMA  462 (489)
Q Consensus       417 r~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~g~~~~~~~~~~~~~~~  462 (489)
                      -+...|-...++.+|+.+++++.+.++ ..+|......+.+.+.++.
T Consensus       143 ~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~  189 (521)
T PRK03612        143 LGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLA  189 (521)
T ss_pred             hhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence            356677788888888888888766544 4567655544555444333

>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs

Probab=88.84  E-value=0.099  Score=49.68  Aligned_cols=34  Identities=15%  Similarity=0.013  Sum_probs=1.8

Q ss_pred             ccccccccccCCchhhhhHHHHHHHHHHHHHHHH
Q 011277          402 PVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFV  435 (489)
Q Consensus       402 ~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~  435 (489)
                      .+...+.++..+++.|-.+-.+......+|-.++
T Consensus       267 tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~G  300 (309)
T PF01733_consen  267 TLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIG  300 (309)
T ss_dssp             HHHH------------------------------
T ss_pred             hceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444566777777777666665555444443333

Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=87.69  E-value=5.5  Score=29.36  Aligned_cols=58  Identities=21%  Similarity=0.200  Sum_probs=42.0

Q ss_pred             HHHHHHhcCCC---cchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHH
Q 011277          312 SSSVFKSAGLS---SGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQV  369 (489)
Q Consensus       312 ~~~~~~~~~~~---~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~  369 (489)
                      .|.+.++.+++   .++......+++++|++...++.++..+++.+..+.+...++...+.
T Consensus        15 LP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma   75 (85)
T PF06779_consen   15 LPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMA   75 (85)
T ss_pred             hHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence            35555666655   35677788899999999999999987777877777666666555443

Note that many members are hypothetical proteins.

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=87.07  E-value=11  Score=36.91  Aligned_cols=106  Identities=16%  Similarity=0.072  Sum_probs=74.9

Q ss_pred             HHHHHH-HHHHHHHHHHhhHhhhhhchhhHHHHHhHH--HHHHHHHHH------hhcchHHHHHHHHHHHhhhccccccc
Q 011277           91 GLVVSM-CLGGAFIGSTLSGWIADGVGRRRAFQLCAL--PMIIGASIS------ATTRNLIGMLLGRFVVGTGMGLGPTV  161 (489)
Q Consensus        91 ~~~~s~-~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~--~~~i~~~l~------~~~~~~~~l~~~R~l~G~g~g~~~~~  161 (489)
                      .+.... |.+...+|.+...++-++= ||...+.+.+  ++.-.-.+|      ..-.+-+++++.-.+.|+..|-....
T Consensus       285 ~~~~~l~fN~~d~vG~~~a~~~~~~~-~r~l~i~v~lR~lfiPlF~~cn~~~~~v~~~~~~~~~~l~~~lglsnGYltsl  363 (406)
T KOG1479|consen  285 LLLVFLSFNVFDLIGSILAALLTWPD-PRKLTIPVLLRLLFIPLFLLCNYPPLPVVFESDGWFIFLMSLLGLSNGYLTSL  363 (406)
T ss_pred             HHHHHHHhHHHHHhhhhhhhcccCCC-CceehHHHHHHHHHHHHHHHhccCCCCceecCchHHHHHHHHHHhccchHhhh
Confidence            345555 8888888866666665554 4443333222  111111111      23456677888899999999999889


Q ss_pred             ccccccccCCcccchhhhhHHHHHHHHHHHHHHHhh
Q 011277          162 AALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIG  197 (489)
Q Consensus       162 ~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~  197 (489)
                      ...+..+..|++++-.+..+.......|...|.+++
T Consensus       364 ~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~s  399 (406)
T KOG1479|consen  364 IMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLLS  399 (406)
T ss_pred             eehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence            999999999999999999999999999988888775

>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs

Probab=86.02  E-value=0.19  Score=47.79  Aligned_cols=107  Identities=18%  Similarity=0.193  Sum_probs=3.7

Q ss_pred             HHHHHHHHHHHHHHhhHhhhhh-chhhHHHHH--hHHHHHHHHHHHh----------hcchHHHHHHHHHHHhhhccccc
Q 011277           93 VVSMCLGGAFIGSTLSGWIADG-VGRRRAFQL--CALPMIIGASISA----------TTRNLIGMLLGRFVVGTGMGLGP  159 (489)
Q Consensus        93 ~~s~~~~g~~ig~~~~g~l~Dr-~GRr~~~~~--~~~~~~i~~~l~~----------~~~~~~~l~~~R~l~G~g~g~~~  159 (489)
                      ....|.+|-.+|-.+.++.-=+ -.+|.++..  .-+++.-.-++|.          ..+|-+..++.-++.|+..|-..
T Consensus       187 ~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGyl~  266 (309)
T PF01733_consen  187 LFLLFNLGDFIGRFLASWPRWPGPSPRWLWILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGYLS  266 (309)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHhcchhcceeEecccccccHHHHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccchhh
Confidence            4556788888888877653211 135554443  2223322222331          23344566777889999999999


Q ss_pred             ccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcc
Q 011277          160 TVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIP  199 (489)
Q Consensus       160 ~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~  199 (489)
                      .....+..+..++++|..+..+...+..+|...|.+++..
T Consensus       267 tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls~~  306 (309)
T PF01733_consen  267 TLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLSFL  306 (309)
T ss_dssp             HHHH------------------------------------
T ss_pred             hceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999888888898888877643

Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=83.39  E-value=18  Score=38.27  Aligned_cols=155  Identities=17%  Similarity=0.080  Sum_probs=90.1

Q ss_pred             CcchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhc---------------cCC---------
Q 011277          322 SSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSS---------------YIP---------  377 (489)
Q Consensus       322 ~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~---------------~~~---------  377 (489)
                      .+|+.....-+++.+..++..+...|..|.+.+.+|.+.++++.++..+....               ..+         
T Consensus       133 ~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~  212 (735)
T KOG3626|consen  133 QSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCC  212 (735)
T ss_pred             cceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhccccCCccccchhhc
Confidence            35665556667777777777888889888888888888888888776543100               000         


Q ss_pred             ------------Cc----hhhHHHHHHHHHHHHHHhcCccc---cccccccccCCchhhhhHHHHHHHHHHHHHHHHHHH
Q 011277          378 ------------GS----ASLYLSVGGMLMFVLTFALGAGP---VPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLL  438 (489)
Q Consensus       378 ------------~~----~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~  438 (489)
                                  ..    .........+++-.+..++|..|   +-..|+-|...+++-..-.|+..++..+|.+++-++
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfll  292 (735)
T KOG3626|consen  213 NKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLL  292 (735)
T ss_pred             cCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHH
Confidence                        00    00000111112222334455444   445688899999999999999888877766655544


Q ss_pred             HHHHHH---Hh---------------C-CchhhHHHHHHHHHHHHHHHhhcccCCCCC
Q 011277          439 FLRLLE---QL---------------G-PQLLYSIFGTFCLMAVAFVKRNVVETKGKS  477 (489)
Q Consensus       439 ~~~l~~---~~---------------g-~~~~~~~~~~~~~~~~~~~~~~~~et~~~~  477 (489)
                      .+.+..   .+               | |+..|.+.+.+.++..+.+ ++.|+++.++
T Consensus       293 gS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~-f~fPk~lp~~  349 (735)
T KOG3626|consen  293 GSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPL-FFFPKELPKS  349 (735)
T ss_pred             HHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHH-HhCcccCccc
Confidence            433321   11               1 2345666666666665544 4555555443

>KOG3097 consensus Predicted membrane protein [Function unknown]

Probab=82.26  E-value=9.3  Score=36.07  Aligned_cols=71  Identities=13%  Similarity=0.138  Sum_probs=54.0

Q ss_pred             HHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhcchHHHHHHHHHHHhhhcccccccccccccccCC
Q 011277          100 GAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSP  171 (489)
Q Consensus       100 g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~  171 (489)
                      ..+..+++.+.+..++|-|.++.++...+... +..=.=+.+..++-.-...|+|.+.....--.|+++.-.
T Consensus        70 ~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~ly-iA~Nl~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g~  140 (390)
T KOG3097|consen   70 SLIDSSMFMPLLIRFLGTKWTMVLAVFPYALY-IAANLEPRYETLVPAGLVLGMAAGPIWASKGTYLTPMGQ  140 (390)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-HHhhcchhHHhhccHHHhhccccccccccCcceecHHHH
Confidence            33466777779999999999998877766542 222244677888899999999999998888888877664

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	489
4gby_A	491	The Structure Of The Mfs (Major Facilitator Superfa		6e-45

>pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily) Proton:xylose Symporter Xyle Bound To D-Xylose Length = 491

Iteration: 1
 Score =  178 bits (451), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 143/488 (29%), Positives = 224/488 (45%), Gaps = 48/488 (9%)
Query: 41  NTNPSWKLSFPHVLVATLSSFLFGYHLGVVNEPLESISL------DLGFNGNTLAEGLVV 94
           NT  +    F   LVATL   LFGY   V++  +ES++       +L  +      G  V
Sbjct: 2   NTQYNSSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCV 61
Query: 95  SMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISA---------TTRNLIGML 145
           +  L G  IG  L G+ ++  GRR + ++ A+   I    SA            N + + 
Sbjct: 62  ASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVY 121
Query: 146 LG---------RFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLI 196
           L          R + G G+GL   ++ +Y+ E++P  +RG   +F Q A   G +    +
Sbjct: 122 LAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCV 181
Query: 197 G--IPVKEIAGW-----WRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFE 249
              I     A W     WR  F    +PA +  + +    ESP WL  +G+  +AE    
Sbjct: 182 NYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILR 241
Query: 250 KLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIF 309
           K++G +    ++ E+      D G       L++G    V+ IG  L   QQ  GIN + 
Sbjct: 242 KIMGNTLATQAVQEIKH--SLDHGRKTGGRLLMFG--VGVIVIGVMLSIFQQFVGINVVL 297
Query: 310 YFSSSVFKSAGLSSGLA---NVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMA 366
           Y++  VFK+ G S+ +A    + VG+ NL  +V+A++ +DK GRK L       MA+ M 
Sbjct: 298 YYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMF 357
Query: 367 IQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMS 426
               A  +  PG  +L      ML +V  FA+  GPV  +LL EIFP+ IR KA+A+ ++
Sbjct: 358 SLGTAFYTQAPGIVALL----SMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVA 413
Query: 427 VHWVINFFVGXXXXXXXXXXXXXX------XYSIFGTFCLMAVAFVKRNVVETKGKSLQE 480
             W+ N+FV                      Y I+G   ++A  F+ + V ETKGK+L+E
Sbjct: 414 AQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEE 473
Query: 481 IEIALLPQ 488
           +E    P+
Sbjct: 474 LEALWEPE 481

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	489
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	5e-08
2cfq_A	417	Lactose permease; transport, transport mechanism,	5e-07
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	7e-06
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	5e-04

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* Length = 438

 Score = 54.2 bits (130), Expect = 5e-08
 Identities = 54/382 (14%), Positives = 103/382 (26%), Gaps = 24/382 (6%)

Query: 29  TTALVQNGTEVENTNPSWKLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTL 88
           T+   Q+   V+      +       +     FL+     + +  L        F     
Sbjct: 4   TSIQTQSYRAVDKDAGQSRSYIIPFALLCSLFFLWAVANNLND-ILLPQ-FQQAFTLTNF 61

Query: 89  AEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASI---SATTRNLIGML 145
             GL+ S    G FI    +G +   +  +           +GA++   +A   N    L
Sbjct: 62  QAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFL 121

Query: 146 LGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAG 205
           +G F++  G+G   T A  +VT + P           Q     G + +++ G  +     
Sbjct: 122 VGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNV 181

Query: 206 WWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELS 265
             +    +  +    L         S    Y              L+    + +    L 
Sbjct: 182 PHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYM------IIVAIVLLVALLIMLTKFPALQ 235

Query: 266 KLDRGDDGDIVKFEE---LLYGRHFRVVFIGSTLF-ALQQLSGINAIFYFSSSVFKSAGL 321
             +  D            L   RH+R   +    +   Q       I Y    +      
Sbjct: 236 SDNHSDAKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAG 295

Query: 322 SSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSAS 381
            +        +   +G      L+ +     +L            I     S++  G   
Sbjct: 296 FAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLI-----SAFAGGHVG 350

Query: 382 LYLSVGGML----MFVLTFALG 399
           L             +   F+LG
Sbjct: 351 LIALTLCSAFMSIQYPTIFSLG 372

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* Length = 417

 Score = 51.1 bits (122), Expect = 5e-07
 Identities = 53/391 (13%), Positives = 108/391 (27%), Gaps = 57/391 (14%)

Query: 91  GLVVSMCLGGAFIGSTLSGWIADGVGRRR--------AFQLCALPMIIGASISATTRNLI 142
           G++ +     + +   L G ++D +G R+           + A   I           L+
Sbjct: 46  GIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILV 105

Query: 143 GMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKE 202
           G ++G   +G     G      ++ +VS       +G           +G+ ++GI    
Sbjct: 106 GSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFE-FGRARMFGCVGWALGASIVGIMFTI 164

Query: 203 IAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLA 262
              +    FW+    A IL + + F                A      L           
Sbjct: 165 NNQFV---FWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFSLKL--------- 212

Query: 263 ELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLS 322
                            EL        + +     +            F +S F +    
Sbjct: 213 ---------------ALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQG 257

Query: 323 SGLANVFVGIANLLGSVVAMVLM-------DKLGRKALLQWSFFSMAVSMAIQVAASSSY 375
           + +     G    +G ++   +M       +++G K  L  +   M+V +       SS+
Sbjct: 258 TRV----FGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIG-----SSF 308

Query: 376 IPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFV 435
              +  + +      + +              +   F  R  A    VC      +    
Sbjct: 309 ATSALEVVIL---KTLHMFEVPF-LLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIF 364

Query: 436 GLLFL-RLLEQLGPQLLYSIFGTFCLMAVAF 465
             +    + E +G Q  Y + G   L     
Sbjct: 365 MSVLAGNMYESIGFQGAYLVLGLVALGFTLI 395

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451

 Score = 47.3 bits (113), Expect = 7e-06
 Identities = 41/321 (12%), Positives = 90/321 (28%), Gaps = 35/321 (10%)

Query: 103 IGSTLSGWIADGVGRRRAFQ----LCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLG 158
               + G ++D    R        L A  M+    +   T ++  M +  F+ G   G+G
Sbjct: 77  FSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMG 136

Query: 159 PTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPA 218
                  +        RG   +    A  +G     L+ +        W    ++    A
Sbjct: 137 WPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCA 196

Query: 219 AILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKF 278
            ++ L               G     E + +     +          +         +  
Sbjct: 197 ILVALFAFAMMRDTPQ--SCGLPPIEEYKNDYPDDYNEKAEQELTAKQ---------IFM 245

Query: 279 EELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSS-----VFKSAGLS---SGLANVFV 330
           + +L  +    + I            +  + Y         + +    +   S  A    
Sbjct: 246 QYVLPNKLLWYIAIA--------NVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLY 297

Query: 331 GIANLLGSVVAMVLMDKL--GRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGG 388
             A + G+++   + DK+  G +      F ++     I    + +  P    + + V G
Sbjct: 298 EYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIG 357

Query: 389 MLMFVLTFALGAGPVPSLLLP 409
            L++     +G       L P
Sbjct: 358 FLIYGPVMLIGL--HALELAP 376

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451

 Score = 41.6 bits (98), Expect = 5e-04
 Identities = 35/169 (20%), Positives = 64/169 (37%), Gaps = 24/169 (14%)

Query: 91  GLVVSMCLGGAFIGSTLSGWIADGV--GRRRAFQLCALPMIIGASI--------SATTRN 140
                +       G+ L GW++D V  G R A  +  + ++  A+I        + T   
Sbjct: 291 SWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDM 350

Query: 141 LIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLG--LMGSLLIGI 198
           +  +++G  + G  M +G     L+  E++P    GT   F  +   LG  +  S ++G 
Sbjct: 351 ICMIVIGFLIYGPVMLIG-----LHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGY 405

Query: 199 PVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAE 247
            V    GW        +V      LA++        + +K R  +   E
Sbjct: 406 TVDFF-GW----DGGFMVMIGGSILAVILLI--VVMIGEKRRHEQLLQE 447

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	489
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	100.0
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	100.0
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	100.0
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.97
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.96
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.93
2xut_A	524	Proton/peptide symporter family protein; transport	99.92
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.22
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.13
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.02
2cfq_A	417	Lactose permease; transport, transport mechanism,	98.99
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	98.92
2xut_A	524	Proton/peptide symporter family protein; transport	98.9
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	98.86

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=100.00  E-value=1.7e-51  Score=417.71  Aligned_cols=433  Identities=30%  Similarity=0.498  Sum_probs=335.4

Q ss_pred             hHHHHHHHHHHHHhhhhccceeeccchhhhhhhcCCCC------chhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHH
Q 011277           48 LSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNG------NTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAF  121 (489)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~  121 (489)
                      ..+...++++++.+++|||.++++.++|.+.++++.+.      ++.+.+++.+.+.+|..+|++++|+++||+|||+++
T Consensus         9 y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l   88 (491)
T 4gc0_A            9 YIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSL   88 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence            33445566788999999999999999999988875422      234468999999999999999999999999999999


Q ss_pred             HHhHHHHHHHHHHHh------------------hcchHHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHH
Q 011277          122 QLCALPMIIGASISA------------------TTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQ  183 (489)
Q Consensus       122 ~~~~~~~~i~~~l~~------------------~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~  183 (489)
                      .++.+++.+++++++                  .++|++.++++|+++|+|.|+..+..+.+++|++|+++|++..++.+
T Consensus        89 ~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~  168 (491)
T 4gc0_A           89 KIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQ  168 (491)
T ss_dssp             HHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhh
Confidence            999999999999998                  47899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhcccccC-------CchhHHHHHHHHHHHHHHHHHhhhccCChHHHHhcCCHHHHHHHHHHHhCCCc
Q 011277          184 IATCLGLMGSLLIGIPVKEI-------AGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSH  256 (489)
Q Consensus       184 ~~~~~G~~~g~~~~~~l~~~-------~~~wr~~f~~~~i~~~~~~~~~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~  256 (489)
                      .+..+|.+.+...+......       ..|||+.+....++.++..+..++.||||+|+..+++.+++++.+++..+++.
T Consensus       169 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~  248 (491)
T 4gc0_A          169 FAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNTL  248 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCch
Confidence            99999988888776543221       23589999888888888888889999999999999999999888877654322


Q ss_pred             hhHHHHHHHhhccCCCCcchhHHHhhhccchhHHHHHHHHHHHHhhhhHHHHHHhHHHHHHhcCCCcc---hHHHHHHHH
Q 011277          257 VKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSG---LANVFVGIA  333 (489)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~  333 (489)
                      ..+...+.....+.+ .+.......   ...+..........++++.+.+.+.+|.+..++..+.+..   ......++.
T Consensus       249 ~~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (491)
T 4gc0_A          249 ATQAVQEIKHSLDHG-RKTGGRLLM---FGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVI  324 (491)
T ss_dssp             HHHHHHHHHHHHHHH-HHHTTHHHH---SCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhh-hhhhhHHHH---hcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHH
Confidence            222111111100000 000011111   2223344444555566677777788888888877766543   345667788


Q ss_pred             HHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCC
Q 011277          334 NLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFP  413 (489)
Q Consensus       334 ~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p  413 (489)
                      .++++++++++.||+|||+.+..+...+.++++.+.......  .  .....+..++++...++.+.+|+.+.+.+|++|
T Consensus       325 ~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fP  400 (491)
T 4gc0_A          325 NLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQ--A--PGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFP  400 (491)
T ss_dssp             HHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTT--C--CHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSC
T ss_pred             HHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcc--c--chHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCC
Confidence            899999999999999999999888777777666554332221  1  122333445566677888889999999999999


Q ss_pred             chhhhhHHHHHHHHHHHHHHHHHHHHHHHHH------HhCCchhhHHHHHHHHHHHHHHHhhcccCCCCCHHHHHHhhcC
Q 011277          414 SRIRAKAMAVCMSVHWVINFFVGLLFLRLLE------QLGPQLLYSIFGTFCLMAVAFVKRNVVETKGKSLQEIEIALLP  487 (489)
Q Consensus       414 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~------~~g~~~~~~~~~~~~~~~~~~~~~~~~et~~~~~~e~~~~~~~  487 (489)
                      ++.|++++|++..++++++++.+.+++.+.+      ..+....|.+++++++++.++.++++||||||++||||+.|++
T Consensus       401 t~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~f~~  480 (491)
T 4gc0_A          401 NAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEALWEP  480 (491)
T ss_dssp             TTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGGTC-
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHHHhCC
Confidence            9999999999999999999999988765533      3466678889999999999999999999999999999999976


Q ss_pred             C
Q 011277          488 Q  488 (489)
Q Consensus       488 ~  488 (489)
                      +
T Consensus       481 ~  481 (491)
T 4gc0_A          481 E  481 (491)
T ss_dssp             -
T ss_pred             C
Confidence            4

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=100.00  E-value=6.6e-33  Score=276.72  Aligned_cols=366  Identities=13%  Similarity=0.091  Sum_probs=262.8

Q ss_pred             HHHHHHHHHhhhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHH
Q 011277           52 HVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIG  131 (489)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~  131 (489)
                      ....+++..+..+++.+..++.+|.+.+++|.+.+  +.+++.+.+.+++.++++++|+++||+|||+++..+.++++++
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~--~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~  104 (438)
T 3o7q_A           27 PFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNF--QAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALG  104 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSH--HHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHH--HHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHH
Confidence            34555666677788878888889999999998754  5689999999999999999999999999999999999999999


Q ss_pred             HHHH---hhcchHHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccc-cCCch-
Q 011277          132 ASIS---ATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVK-EIAGW-  206 (489)
Q Consensus       132 ~~l~---~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~-~~~~~-  206 (489)
                      .+++   +.+++++.++++|+++|++.|...+....+++|++|+++|+++.++++.+..+|..++++++..+. +..+. 
T Consensus       105 ~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~  184 (438)
T 3o7q_A          105 AALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQ  184 (438)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCC
T ss_pred             HHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence            9999   889999999999999999999999999999999999999999999999999999999999988776 55554 


Q ss_pred             -----------------------hHHHHHHHHHHHHHHHHHhh--hccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHH
Q 011277          207 -----------------------WRICFWVSIVPAAILCLAMV--FCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSL  261 (489)
Q Consensus       207 -----------------------wr~~f~~~~i~~~~~~~~~~--~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (489)
                                             ||+.|++.....++..+..+  ..||+++.   + +.                    
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~---~-~~--------------------  240 (438)
T 3o7q_A          185 SQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSD---N-HS--------------------  240 (438)
T ss_dssp             CHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTT---C-CC--------------------
T ss_pred             cccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccccc---c-cc--------------------
Confidence                                   79999765544444433333  24555320   0 00                    


Q ss_pred             HHHHhhccCCCCcchhHHHhhhccchhHHHHHHHHHHHHhhhhHHHHHHhHHHH-HHhc-CCCc---chHHHHHHHHHHH
Q 011277          262 AELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSV-FKSA-GLSS---GLANVFVGIANLL  336 (489)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~---~~~~~~~~i~~~~  336 (489)
                            ++++.....++++.++++.++......++......    ....+.+.. .++. +.+.   +.......++..+
T Consensus       241 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  310 (438)
T 3o7q_A          241 ------DAKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQT----ACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFI  310 (438)
T ss_dssp             ------CSSTTSHHHHHHHHTTCSHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHH
T ss_pred             ------cccccchhhhHHHHHhChHHHHHHHHHHHHHHHHH----HHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHH
Confidence                  00111112345566666666665554443332222    222333333 3333 5543   4556667788899


Q ss_pred             HHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchh
Q 011277          337 GSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRI  416 (489)
Q Consensus       337 g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~  416 (489)
                      +.++.++++||+|||+.+..+.+...++.++.....      .. ..  +....+..++.+ ...|....+..|.+|++ 
T Consensus       311 ~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~------~~-~~--~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~-  379 (438)
T 3o7q_A          311 GRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAG------GH-VG--LIALTLCSAFMS-IQYPTIFSLGIKNLGQD-  379 (438)
T ss_dssp             HHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCC------HH-HH--HHHHHHHHHHHT-THHHHHHHHHHSSCGGG-
T ss_pred             HHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcC------Cc-HH--HHHHHHHHHHHH-HHHHHHHHHHHhhcccc-
Confidence            999999999999999988877766655544433211      11 11  111222222222 23456667778999966 


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CchhhHHHHHHHHHHHHH
Q 011277          417 RAKAMAVCMSVHWVINFFVGLLFLRLLEQLG-PQLLYSIFGTFCLMAVAF  465 (489)
Q Consensus       417 r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g-~~~~~~~~~~~~~~~~~~  465 (489)
                      |+++.++.. .+++++.++|.+.+.+.+..| +...|.+.+++.++..++
T Consensus       380 ~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~  428 (438)
T 3o7q_A          380 TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIF  428 (438)
T ss_dssp             HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHHH
T ss_pred             ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence            899998877 778999999999999999988 877877665555444443

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=100.00  E-value=6.2e-34  Score=285.20  Aligned_cols=392  Identities=12%  Similarity=0.070  Sum_probs=269.0

Q ss_pred             HHHHHHHHHHHhhhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHH
Q 011277           50 FPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMI  129 (489)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~  129 (489)
                      ++.....+++.+..+++.....+.+|.+.+|+ .+.+  +.+++.+.+.++..++++++|+++||+|||+++..+.++++
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~--~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~  103 (451)
T 1pw4_A           27 WQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRG--DLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAA  103 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSS--CHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHh--HHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHH
Confidence            34456667777888888888888999999998 6654  46899999999999999999999999999999999999999


Q ss_pred             HHHHHHhh----cchHHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCc
Q 011277          130 IGASISAT----TRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAG  205 (489)
Q Consensus       130 i~~~l~~~----~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~  205 (489)
                      ++.+++++    ++|++.++++|+++|++.|...+....++.|++|+++|+++.++...+..+|..+++.++..+.+..+
T Consensus       104 ~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g  183 (451)
T 1pw4_A          104 AVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFN  183 (451)
T ss_dssp             HHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTC
T ss_pred             HHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999    99999999999999999999999999999999999999999999999999999999988876555454


Q ss_pred             hhHHHHHHHHHHHHHH-HHHhhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhc
Q 011277          206 WWRICFWVSIVPAAIL-CLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYG  284 (489)
Q Consensus       206 ~wr~~f~~~~i~~~~~-~~~~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (489)
                      .||+.|++.++..++. ++..+++||+|+....+++.+. +        . ..+...++  +.++....+....++.+++
T Consensus       184 ~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--------~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~  251 (451)
T 1pw4_A          184 DWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEY-K--------N-DYPDDYNE--KAEQELTAKQIFMQYVLPN  251 (451)
T ss_dssp             CSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTT-C--------C-C---------------CCTHHHHHHTSSC
T ss_pred             cHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhh-c--------c-cccccchh--hhhcccccccchHHHHHcC
Confidence            2599988866555544 3445678898764211111000 0        0 00000000  0000001111113445555


Q ss_pred             cchhHHHHHHHHHHHHhhhhHHHHHHhHHHHHHh-cCCCc---chHHHHHHHHHHHHHHHHHHHhhhc--CCchhHHHhh
Q 011277          285 RHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKS-AGLSS---GLANVFVGIANLLGSVVAMVLMDKL--GRKALLQWSF  358 (489)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~i~~~~g~~~~g~l~dr~--grr~~~~~~~  358 (489)
                      +.++......++....    ......+.+..+++ .+.+.   +.......++.+++.++.+++.||+  |||+.+..+.
T Consensus       252 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~  327 (451)
T 1pw4_A          252 KLLWYIAIANVFVYLL----RYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFF  327 (451)
T ss_dssp             HHHHHHHHHHHHHHHH----HHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHH
Confidence            5555444333332221    22233344444444 45543   4566677788999999999999999  9998876665


Q ss_pred             HHHH-HHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHH-HHHHHH
Q 011277          359 FSMA-VSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWV-INFFVG  436 (489)
Q Consensus       359 ~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~-~~~~~~  436 (489)
                      .... ++..+..     ..+. ...+......++.+.+.. +..+....+..|.+|++.|+++.|+.+.+.++ +..+++
T Consensus       328 ~~~~~~~~~~~~-----~~~~-~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~  400 (451)
T 1pw4_A          328 MTLVTIATIVYW-----MNPA-GNPTVDMICMIVIGFLIY-GPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAAS  400 (451)
T ss_dssp             HHHHHHHHHHTT-----SCCT-TCHHHHHHHHHHHHHHHT-HHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH-----Hhcc-cCHHHHHHHHHHHHHHHh-chHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHH
Confidence            4444 3222211     1111 112222222222222221 22344456889999999999999999999999 999999


Q ss_pred             HHHHHHHHHhCCchhhHHHHHHHHHHHHHHH
Q 011277          437 LLFLRLLEQLGPQLLYSIFGTFCLMAVAFVK  467 (489)
Q Consensus       437 ~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~  467 (489)
                      .+.+.+.+..|+...|.+.+++++++.+...
T Consensus       401 ~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~  431 (451)
T 1pw4_A          401 AIVGYTVDFFGWDGGFMVMIGGSILAVILLI  431 (451)
T ss_dssp             HHHHHHHHSSCSHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCcHHHHHHHHHHHHHHHHHHH
Confidence            9999998988888888888777766655443

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.97  E-value=3.4e-29  Score=253.71  Aligned_cols=390  Identities=14%  Similarity=0.111  Sum_probs=232.3

Q ss_pred             cCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhh-chhhHHHHHhHHHHHHHHHHHhhcchHHHHHHHHHHHhhhccccc
Q 011277           81 LGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADG-VGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGP  159 (489)
Q Consensus        81 ~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr-~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l~~~R~l~G~g~g~~~  159 (489)
                      +|.+  ..+.+++.+.+.++..+++++.|+++|| +|||+++..+.++++++.+++++++|++.++++|+++|++.|...
T Consensus        49 ~~~s--~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~  126 (491)
T 4aps_A           49 LHIT--RATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLK  126 (491)
T ss_dssp             CCSC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHH
T ss_pred             cCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcc
Confidence            7775  4456899999999999999999999999 899999999999999999999999999999999999999999999


Q ss_pred             ccccccccccCCccc--chhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHHHHHhhh-ccCChH---
Q 011277          160 TVAALYVTEVSPPFV--RGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVF-CAESPH---  233 (489)
Q Consensus       160 ~~~~~~i~e~~~~~~--Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~i~~~~~~~~~~~-~~Esp~---  233 (489)
                      +....+++|++|+++  |+...++++.+..+|..+++.++..+.+..+ ||+.|++.++..++..+...+ .++..+   
T Consensus       127 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g-~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (491)
T 4aps_A          127 PNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAG-YHVAFSLAAIGMFIGLLVYYFGGKKTLDPHY  205 (491)
T ss_dssp             HHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC-HHHHHHHHHHHHHHHHHHHHHHHHTTCCSCC
T ss_pred             chHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHHHhCcccccccc
Confidence            999999999999999  7778888899999999999999888776666 699998865544443333322 121100   


Q ss_pred             -HHHhcCCHHHHHHHHHH----------------HhCCCchhHHHHH---------HHhhccCCCCcchhHHHhhhccch
Q 011277          234 -WLYKKGRTAEAEAEFEK----------------LLGGSHVKSSLAE---------LSKLDRGDDGDIVKFEELLYGRHF  287 (489)
Q Consensus       234 -~l~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~  287 (489)
                       ....+.+.++.++..++                ..+....++....         .....+..+...  .....+++..
T Consensus       206 ~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~  283 (491)
T 4aps_A          206 LRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVK--VTSTEHLRVV  283 (491)
T ss_dssp             SCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC--------------CT
T ss_pred             cCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhccc--ccHHHHHHHH
Confidence             00001122222222221                0000000000000         000000000000  0000111111


Q ss_pred             --hHHHHHHHHHHHHhhhhHHHHHHhHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHhhhcCCchhHH-----HhhHH
Q 011277          288 --RVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQ-----WSFFS  360 (489)
Q Consensus       288 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~-----~~~~~  360 (489)
                        ........+............+.|....++......+.......++.+++.++.+++.||++||+...     .+...
T Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~  363 (491)
T 4aps_A          284 SYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMF  363 (491)
T ss_dssp             THHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHH
Confidence              11222222222222212222222322222222234566677778888888999999999999986543     44444


Q ss_pred             HHHHHHHHHHHhhccC-CCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHH
Q 011277          361 MAVSMAIQVAASSSYI-PGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLF  439 (489)
Q Consensus       361 ~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~  439 (489)
                      .+++..+......... ......+..+...++.+.+.. ...|....+..|.+|++.|++++|+.+...++++.+++.+.
T Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~-~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~  442 (491)
T 4aps_A          364 AGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEM-LISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLV  442 (491)
T ss_dssp             HHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHH-TTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHG
T ss_pred             HHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHH-HHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444433322211100 011112222222233333322 23566677899999999999999999999999999999876


Q ss_pred             HHHHHHhCCchhhHHHHHHHHHHHHHHHhhcccCCCCC
Q 011277          440 LRLLEQLGPQLLYSIFGTFCLMAVAFVKRNVVETKGKS  477 (489)
Q Consensus       440 ~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~et~~~~  477 (489)
                      +.+. ..+....|.+++.++++..+..+...|+++++.
T Consensus       443 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  479 (491)
T 4aps_A          443 TLYN-AKSEVAYFSYFGLGSVVLGIVLVFLSKRIQGLM  479 (491)
T ss_dssp             GGGG-GSSTTHHHHHTHHHHHHHHHHHHHC--------
T ss_pred             HHHh-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5443 446667777888887777777666777776653

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.96  E-value=7.2e-30  Score=249.44  Aligned_cols=356  Identities=14%  Similarity=0.108  Sum_probs=242.4

Q ss_pred             HHHHHHHhhhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHH
Q 011277           54 LVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGAS  133 (489)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~  133 (489)
                      +.+++..+..+++.+...+.+|.+.+++|.+.+  +.+++.+.+.++..+++++.|+++||+|||+++..+.++..++.+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~--~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~   80 (375)
T 2gfp_A            3 LMLVLLVAVGQMAQTIYIPAIADMARDLNVREG--AVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATL   80 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTH--HHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHH
Confidence            345666677778888888899999999988654  568999999999999999999999999999999999999999999


Q ss_pred             HHhhcchHHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHH
Q 011277          134 ISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWV  213 (489)
Q Consensus       134 l~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~  213 (489)
                      +.+.++|++.+++.|+++|++.+...+....++.|++|+++|++..+++.....+|..+++.++..+.+..+ ||+.|++
T Consensus        81 ~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-~~~~~~~  159 (375)
T 2gfp_A           81 VAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWN-WRACYLF  159 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHH-HHHHHHH
T ss_pred             HHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcc-HHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999888776555 7999987


Q ss_pred             HHHHHHHHHH-HhhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHHH
Q 011277          214 SIVPAAILCL-AMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFI  292 (489)
Q Consensus       214 ~~i~~~~~~~-~~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (489)
                      ..+..++..+ ..+..||+++.   ++++                              +....++++.++++.++....
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~---~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~  206 (375)
T 2gfp_A          160 LLVLCAGVTFSMARWMPETRPV---DAPR------------------------------TRLLTSYKTLFGNSGFNCYLL  206 (375)
T ss_dssp             HHHHHHHHHCCCCCSSCCCSTT---TCCC------------------------------CCTTTCSTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCcccCCC---Cccc------------------------------ccHHHHHHHHhcCcchHHHHH
Confidence            6655555444 34567887531   0000                              001112334455555554443


Q ss_pred             HHHHHHHHhhhhHHHHHHhHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHH-HHHHHHHHHHH
Q 011277          293 GSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFS-MAVSMAIQVAA  371 (489)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~-~~i~~~~~~~~  371 (489)
                      ...+............+.+..+.++......+.......++.+++.++.+++.||++++.  ..+... ...+.......
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~--~~~~~~~~~~~~~~~~~~  284 (375)
T 2gfp_A          207 MLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLM--WQSVICCLLAGLLMWIPD  284 (375)
T ss_dssp             HHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHH--HHHHHHHHHTSSSSSHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHh
Confidence            333322221111111122223323322223455666677888888888899999887732  222221 11111110110


Q ss_pred             hhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchh
Q 011277          372 SSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLL  451 (489)
Q Consensus       372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~  451 (489)
                      ..    .....+......++..++.+. ..|....+..|.+| +.|+++.|+.+...+++..++|.+.+.+.+..++...
T Consensus       285 ~~----~~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~  358 (375)
T 2gfp_A          285 WF----GVMNVWTLLVPAALFFFGAGM-LFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLG  358 (375)
T ss_dssp             HH----HHHHHHHHHHHHHHHHHHHHH-TSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHH
T ss_pred             hh----ccccHHHHHHHHHHHHHHHHH-hhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHH
Confidence            00    000112222222333333332 34666678899998 8999999999999999999998887777665554444


Q ss_pred             hH
Q 011277          452 YS  453 (489)
Q Consensus       452 ~~  453 (489)
                      +.
T Consensus       359 ~~  360 (375)
T 2gfp_A          359 LL  360 (375)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.93  E-value=1.5e-26  Score=229.27  Aligned_cols=374  Identities=16%  Similarity=0.081  Sum_probs=212.6

Q ss_pred             eeeccchhhh-hhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHH---HHhhcchH-H
Q 011277           68 GVVNEPLESI-SLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGAS---ISATTRNL-I  142 (489)
Q Consensus        68 ~~~~~~~~~i-~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~---l~~~~~~~-~  142 (489)
                      +...+.+|.. .+++|.+..  +.|++.+.+.+++.++++++|+++||+|||+++..+..+++++..   ..+.+... .
T Consensus        24 ~~~~~~~~~~l~~~~g~s~~--~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~  101 (417)
T 2cfq_A           24 GAYFPFFPIWLHDINHISKS--DTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQY  101 (417)
T ss_dssp             HHHTTTHHHHHHTTTCCCTT--TSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445566664 456787654  458999999999999999999999999999999988877655321   11222221 1


Q ss_pred             HHHHHHHHHhhhcccccccccccccccCCc--ccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHH
Q 011277          143 GMLLGRFVVGTGMGLGPTVAALYVTEVSPP--FVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAI  220 (489)
Q Consensus       143 ~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~--~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~i~~~~  220 (489)
                      .+..+|.+.|++.|...+.....+.++.++  ++|+...+.......+|..+++.++..+.+. + ||+.|++..+..++
T Consensus       102 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~-~-~~~~f~~~~~~~~~  179 (417)
T 2cfq_A          102 NILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTI-N-NQFVFWLGSGCALI  179 (417)
T ss_dssp             TCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHHH-C-SHHHHTTTTTTTTT
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHh-c-hhHHHHHHHHHHHH
Confidence            234566776666555444444444444443  3456555666555666766777766655442 3 69999876555444


Q ss_pred             HHHHhhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccchhHHHHHHHHHHHH
Q 011277          221 LCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQ  300 (489)
Q Consensus       221 ~~~~~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (489)
                      ..+..++.+|+|+.   +.+.++.         .            .++.++......++.++++.++............
T Consensus       180 ~~~~~~~~~~~~~~---~~~~~~~---------~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (417)
T 2cfq_A          180 LAVLLFFAKTDAPS---SATVANA---------V------------GANHSAFSLKLALELFRQPKLWFLSLYVIGVSCT  235 (417)
T ss_dssp             HHHHSCSSCCCCSC---SSCSSSS---------S------------SSCCCCCCHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCccccc---ccccccc---------c------------ccccccccHHHHHHHhcCCchhhHHHHHHHHHHH
Confidence            44444444443210   0000000         0            0000011112334555555554433322221111


Q ss_pred             hhhhHHHHHHhHHHHHHhcCC---CcchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCC
Q 011277          301 QLSGINAIFYFSSSVFKSAGL---SSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIP  377 (489)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~  377 (489)
                      ........+.|....++..+.   ..+.......++..++.++.++++||+|||+++..+....++......     .. 
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~-----~~-  309 (417)
T 2cfq_A          236 YDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSS-----FA-  309 (417)
T ss_dssp             HHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHT-----TC-
T ss_pred             HHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHH-----Hh-
Confidence            111111112222211110000   113344455567788899999999999999988776655554433221     11 


Q ss_pred             CchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHhCCchhhHHHH
Q 011277          378 GSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVC-MSVHWVINFFVGLLFLRLLEQLGPQLLYSIFG  456 (489)
Q Consensus       378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~  456 (489)
                      ..... + +....+....+.. ..+..+.+.+|.+|++.|+++.++. +..+++++.++|.+.+.+.+..|+...|.+++
T Consensus       310 ~~~~~-~-~~~~~l~~~~~~~-~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~  386 (417)
T 2cfq_A          310 TSALE-V-VILKTLHMFEVPF-LLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLG  386 (417)
T ss_dssp             CSHHH-H-HHHTTHHHHHHHH-HHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHH
T ss_pred             ccHHH-H-HHHHHHHHHHHHH-HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHH
Confidence            11111 1 1111111111111 1123356899999999999999995 77788999999999888888777777788888


Q ss_pred             HHHHHHHHHHHhhcccCCCCCH
Q 011277          457 TFCLMAVAFVKRNVVETKGKSL  478 (489)
Q Consensus       457 ~~~~~~~~~~~~~~~et~~~~~  478 (489)
                      ++++++.+......||+|..++
T Consensus       387 ~~~l~~~~~~~~~~~~~~~~~~  408 (417)
T 2cfq_A          387 LVALGFTLISVFTLSGPGPLSL  408 (417)
T ss_dssp             HHHHHHHHHHTTSSCCSCTTCS
T ss_pred             HHHHHHHHHHHhhhcCCCchHH
Confidence            8888777776677888776654

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.92  E-value=6.9e-25  Score=223.94  Aligned_cols=151  Identities=17%  Similarity=0.180  Sum_probs=128.1

Q ss_pred             cchhh-hhhhcC------CCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhc-hhhHHHHHhHHHHHHHHHHHhhcc-hHH
Q 011277           72 EPLES-ISLDLG------FNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGV-GRRRAFQLCALPMIIGASISATTR-NLI  142 (489)
Q Consensus        72 ~~~~~-i~~~~~------~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~-GRr~~~~~~~~~~~i~~~l~~~~~-~~~  142 (489)
                      +.++. +.+++|      .+.+  +.+++.+.+.++..+++++.|+++||+ |||+++..+.++++++.++.++++ +++
T Consensus        33 ~~l~~~l~~~~~~~~~~~~s~~--~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~  110 (524)
T 2xut_A           33 NILTPFLMTALLLSIPEELRGA--VAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQ  110 (524)
T ss_dssp             HHHHHHHHHSCSSCCSSSTTTT--THHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHH
T ss_pred             HHHHHHHHHHhccccccccCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHH
Confidence            34443 456777      6544  568999999999999999999999999 999999999999999999999998 999


Q ss_pred             HHHHHHHHHhhhcccccccccccccccCCcccchhhhhH---HHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHH
Q 011277          143 GMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAF---IQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAA  219 (489)
Q Consensus       143 ~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~---~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~i~~~  219 (489)
                      .++++|+++|++.|...+....++.|++|+++|++..+.   +..+..+|..+++.++..+.+..+ ||+.|++.++..+
T Consensus       111 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g-~~~~f~~~~~~~~  189 (524)
T 2xut_A          111 GFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFG-AAVAFGIPGVLMF  189 (524)
T ss_dssp             HHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSC-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-HHHHHHHHHHHHH
Confidence            999999999999999999999999999999999887766   888889999999998887766666 6999988665555


Q ss_pred             HHHHHh
Q 011277          220 ILCLAM  225 (489)
Q Consensus       220 ~~~~~~  225 (489)
                      +..+..
T Consensus       190 ~~~~~~  195 (524)
T 2xut_A          190 VATVFF  195 (524)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            444433

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.22  E-value=9.9e-11  Score=116.36  Aligned_cols=166  Identities=17%  Similarity=0.165  Sum_probs=126.6

Q ss_pred             HHHHhhhhccceeeccchhhhhhh-cCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhc--hhhHHHHHhHHHHH-HHH
Q 011277           57 TLSSFLFGYHLGVVNEPLESISLD-LGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGV--GRRRAFQLCALPMI-IGA  132 (489)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~--GRr~~~~~~~~~~~-i~~  132 (489)
                      .+..++............|.+.++ +|.+  +.+.++..+...++..++.++.|+++||+  |||+.+..+..+.. ++.
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~  335 (451)
T 1pw4_A          258 AIANVFVYLLRYGILDWSPTYLKEVKHFA--LDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIAT  335 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHBTTBSCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHH
Confidence            333333333333345556666666 6765  44567888889999999999999999999  99999988877766 666


Q ss_pred             HHHhhc--chHHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHH-HHHHHHHhhcccccCCchhHH
Q 011277          133 SISATT--RNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCL-GLMGSLLIGIPVKEIAGWWRI  209 (489)
Q Consensus       133 ~l~~~~--~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~-G~~~g~~~~~~l~~~~~~wr~  209 (489)
                      ++....  .+.+.+.+.-++.|++.+...+....++.|.+|+++||++.++++....+ |..+++.+.+.+.+..+ |+.
T Consensus       336 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g-~~~  414 (451)
T 1pw4_A          336 IVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG-WDG  414 (451)
T ss_dssp             HHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC-SHH
T ss_pred             HHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-cHH
Confidence            666655  36777788889999988888888888999999999999999999999999 99999988877777666 588


Q ss_pred             HHHHHHHHHHHHHHHh
Q 011277          210 CFWVSIVPAAILCLAM  225 (489)
Q Consensus       210 ~f~~~~i~~~~~~~~~  225 (489)
                      .|++..+..++..+..
T Consensus       415 ~~~~~~~~~~~~~~~~  430 (451)
T 1pw4_A          415 GFMVMIGGSILAVILL  430 (451)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            8877655444444433

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.13  E-value=5.4e-11  Score=119.80  Aligned_cols=157  Identities=17%  Similarity=0.081  Sum_probs=97.7

Q ss_pred             ccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhc-----chHHHHH
Q 011277           71 NEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATT-----RNLIGML  145 (489)
Q Consensus        71 ~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~-----~~~~~l~  145 (489)
                      ....+.+.++.+.+...  .........+...++.++.+++.||+|||+.++.+.....++.+..+..     ++...+.
T Consensus       297 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  374 (491)
T 4gc0_A          297 LYYAPEVFKTLGASTDI--ALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALL  374 (491)
T ss_dssp             HHHHHHHHHHSSCCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred             HhcchHHHHhcCCCccc--hhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHH
Confidence            33456677776654332  2344455566777899999999999999999998888877776654432     2222222


Q ss_pred             H-HHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccC------CchhHHHHHHHHHHH
Q 011277          146 L-GRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEI------AGWWRICFWVSIVPA  218 (489)
Q Consensus       146 ~-~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~------~~~wr~~f~~~~i~~  218 (489)
                      . .-+..+++.+ ..++...+.+|.+|.+.|++..++......+|..+++.+...+.+.      .+ +.+.|++.+...
T Consensus       375 ~~~~~~~~~~~~-~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~-~~~~~~i~~~~~  452 (491)
T 4gc0_A          375 SMLFYVAAFAMS-WGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFH-NGFSYWIYGCMG  452 (491)
T ss_dssp             HHHHHHHHHHTT-TTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHT-TCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhH-HHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hhHHHHHHHHHH
Confidence            2 2222233322 3356678899999999999999998888777766665543322211      11 234455433333


Q ss_pred             H-HHHHHhhhccCC
Q 011277          219 A-ILCLAMVFCAES  231 (489)
Q Consensus       219 ~-~~~~~~~~~~Es  231 (489)
                      + ...+..+++|||
T Consensus       453 ~~~~i~~~~~~PET  466 (491)
T 4gc0_A          453 VLAALFMWKFVPET  466 (491)
T ss_dssp             HHHHHHHHHHCCCC
T ss_pred             HHHHHHHHheecCC
Confidence            3 334456789999

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.02  E-value=5.4e-10  Score=110.59  Aligned_cols=141  Identities=14%  Similarity=0.028  Sum_probs=109.2

Q ss_pred             ccchhhh-hhhc-CCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhcchHHHHHHHH
Q 011277           71 NEPLESI-SLDL-GFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGR  148 (489)
Q Consensus        71 ~~~~~~i-~~~~-~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l~~~R  148 (489)
                      ...+|.+ .++. |.+  +.+.++..+.+.++..++.++.|+++||+|||+++..+.++..++.++....++...+... 
T Consensus       278 ~~~~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  354 (438)
T 3o7q_A          278 WSYLIRYAVEEIPGMT--AGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIAL-  354 (438)
T ss_dssp             HHHHHHHHHHHSTTCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH-
T ss_pred             HHHHHHHhhhccCCcc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHHHH-
Confidence            3445555 5554 665  4456788888899999999999999999999999999999999998888888887765555 


Q ss_pred             HHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHH
Q 011277          149 FVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIV  216 (489)
Q Consensus       149 ~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~i  216 (489)
                      ++.|++.+...+....+..|..|++ |+...++.. ...+|..+++.+.+.+.+..+.++..|++..+
T Consensus       355 ~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~  420 (438)
T 3o7q_A          355 TLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPAL  420 (438)
T ss_dssp             HHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence            8889999988888888889999977 888888776 44577777777776666555524666665433

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=98.99  E-value=4.4e-10  Score=110.72  Aligned_cols=141  Identities=13%  Similarity=-0.004  Sum_probs=108.7

Q ss_pred             HHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhcchHHHHHHHHHHHhhhccccccccccccccc
Q 011277           90 EGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEV  169 (489)
Q Consensus        90 ~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~  169 (489)
                      .++..+...++..++.++.|+++||+|||+++..+.++.+++.++.+..++.+.+++..++.+++.+...+....++.|.
T Consensus       261 ~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  340 (417)
T 2cfq_A          261 FGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQ  340 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45666777778888999999999999999999988888888877777888888888888888887666556667899999


Q ss_pred             CCcccchhhhhH-HHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHHHHH-hhhccCC
Q 011277          170 SPPFVRGTYGAF-IQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLA-MVFCAES  231 (489)
Q Consensus       170 ~~~~~Rg~~~~~-~~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~i~~~~~~~~-~~~~~Es  231 (489)
                      +|++.||...++ ++....+|..++|.+++.+.+..+ ++..|++.++..++..+. ....||.
T Consensus       341 ~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g-~~~~f~~~~~~~l~~~~~~~~~~~~~  403 (417)
T 2cfq_A          341 FEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIG-FQGAYLVLGLVALGFTLISVFTLSGP  403 (417)
T ss_dssp             SCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSH-HHHHHHHHHHHHHHHHHHHTTSSCCS
T ss_pred             CCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcC-cHHHHHHHHHHHHHHHHHHHhhhcCC
Confidence            999999998888 477788888888888777665555 577777655444444333 3445554

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=98.92  E-value=7.6e-09  Score=103.99  Aligned_cols=139  Identities=12%  Similarity=0.192  Sum_probs=96.7

Q ss_pred             cCCCc---chHHHHHHHHHHHHHHHHHHHhhh-cCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHH
Q 011277          319 AGLSS---GLANVFVGIANLLGSVVAMVLMDK-LGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVL  394 (489)
Q Consensus       319 ~~~~~---~~~~~~~~i~~~~g~~~~g~l~dr-~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  394 (489)
                      .+.+.   ++......++..++.+++|+++|| +|||+++..+..+..++.++....     .+ ....  +...++.++
T Consensus        49 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~-----~~-~~~~--~~~~~l~g~  120 (491)
T 4aps_A           49 LHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALP-----FG-ASAL--FGSIILIII  120 (491)
T ss_dssp             CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSC-----CS-TTHH--HHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHh-----hh-HHHH--HHHHHHHHH
Confidence            45543   456677778899999999999999 899999988877777666554321     11 1111  111222222


Q ss_pred             HHhcCccccccccccccCCchh--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHH
Q 011277          395 TFALGAGPVPSLLLPEIFPSRI--RAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFV  466 (489)
Q Consensus       395 ~~~~~~~~~~~~~~~e~~p~~~--r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~  466 (489)
                      +.+. ..|....+.+|.+|++.  |+++.+..+....++..++|.+...+.+..++.+.|.+.++..+++.+..
T Consensus       121 ~~~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~  193 (491)
T 4aps_A          121 GTGF-LKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVY  193 (491)
T ss_dssp             HHHH-HHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHh-ccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence            2221 23556678999999988  77788878889999999999988888888898888888766665554443

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=98.90  E-value=1.8e-08  Score=102.19  Aligned_cols=136  Identities=18%  Similarity=0.214  Sum_probs=94.4

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHhhhc-CCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCcc
Q 011277          323 SGLANVFVGIANLLGSVVAMVLMDKL-GRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAG  401 (489)
Q Consensus       323 ~~~~~~~~~i~~~~g~~~~g~l~dr~-grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  401 (489)
                      .++......++..++.+++|+++||+ |||+++..+.++..++.++.....     ...  +......++.+++.+ ...
T Consensus        56 ~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~-----~~~--~~~~~~~~l~g~~~~-~~~  127 (524)
T 2xut_A           56 AKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFE-----HSV--QGFYTGLFLIALGSG-GIK  127 (524)
T ss_dssp             HHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTS-----SCH--HHHHHHHHHHHHHHH-TTH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhc-----ccH--HHHHHHHHHHHHhcc-ccc
Confidence            45666777788899999999999999 999998888777666655543221     011  111122222233222 234


Q ss_pred             ccccccccccCCchhhhhHHHH---HHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHH
Q 011277          402 PVPSLLLPEIFPSRIRAKAMAV---CMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFV  466 (489)
Q Consensus       402 ~~~~~~~~e~~p~~~r~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~  466 (489)
                      |....+.+|.+|++.|++..+.   .....+++..++|.+...+.+..++.+.|.+.+++.++..+..
T Consensus       128 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~  195 (524)
T 2xut_A          128 PLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFF  195 (524)
T ss_dssp             HHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence            5666789999999999876666   8888888999999887777777888888887777766555444

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=98.86  E-value=3.6e-09  Score=102.42  Aligned_cols=155  Identities=12%  Similarity=0.063  Sum_probs=108.7

Q ss_pred             HHHHHhcCCCc---chHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHH
Q 011277          313 SSVFKSAGLSS---GLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGM  389 (489)
Q Consensus       313 ~~~~~~~~~~~---~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (489)
                      +.+.++.+.+.   ++......++..++.++.|+++||+|||+.+..+.....++..+......        .+......
T Consensus        24 ~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~--------~~~l~~~~   95 (375)
T 2gfp_A           24 ADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSS--------LTVLIAAS   95 (375)
T ss_dssp             HHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHH--------HHHHHHHH
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhcc--------HHHHHHHH
Confidence            44445555553   45566677888899999999999999999998888777777665544321        11111112


Q ss_pred             HHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHhh
Q 011277          390 LMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRN  469 (489)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  469 (489)
                      ++.+.+.+ ...+....+..|.+|+++|+++.+.......++..+++.+...+.+..++...+.+.+.+.++..+.....
T Consensus        96 ~l~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (375)
T 2gfp_A           96 AMQGMGTG-VGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARW  174 (375)
T ss_dssp             HHHHHHHH-HHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCS
T ss_pred             HHHHHHHH-hhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Confidence            22222222 12345566889999999999999999999999999999887777666677788887777777666655567


Q ss_pred             cccCCCC
Q 011277          470 VVETKGK  476 (489)
Q Consensus       470 ~~et~~~  476 (489)
                      +||++.+
T Consensus       175 ~~~~~~~  181 (375)
T 2gfp_A          175 MPETRPV  181 (375)
T ss_dssp             SCCCSTT
T ss_pred             CcccCCC
Confidence            8887654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	489
d1pw4a_	447	f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es	2e-16
d1pv7a_	417	f.38.1.2 (A:) Lactose permease {Escherichia coli [	5e-10

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

 Score = 79.3 bits (194), Expect = 2e-16
 Identities = 55/448 (12%), Positives = 131/448 (29%), Gaps = 22/448 (4%)

Query: 40  ENTNPSWKLSFPHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLG 99
              +P+++     + +     +   Y +           ++ GF+   L  G  +S    
Sbjct: 13  AEIDPTYRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQGFSRGDL--GFALSGISI 70

Query: 100 GAFIGSTLSGWIADGVGRRRAFQ----LCALPMIIGASISATTRNLIGMLLGRFVVGTGM 155
                  + G ++D    R        L A  M+    +   T ++  M +  F+ G   
Sbjct: 71  AYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQ 130

Query: 156 GLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSI 215
           G+G       +        RG   +    A  +G     L+ +        W    ++  
Sbjct: 131 GMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPA 190

Query: 216 VPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDI 275
             A ++ L                   E + ++         +   A+            
Sbjct: 191 FCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQ----------- 239

Query: 276 VKFEELLYGRHFRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANL 335
           +  + +L  +    + I +    L +   ++    +   V   A   S  A      A +
Sbjct: 240 IFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGI 299

Query: 336 LGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLT 395
            G+++   + DK+ R         +    M +   A+  Y    A         ++ +  
Sbjct: 300 PGTLLCGWMSDKVFRGNRG----ATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGF 355

Query: 396 FALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVG-LLFLRLLEQLGPQLLYSI 454
              G   +  L   E+ P +    A        ++        +    ++  G    + +
Sbjct: 356 LIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMV 415

Query: 455 FGTFCLMAVAFVKRNVVETKGKSLQEIE 482
                ++AV  +   ++  K +  Q ++
Sbjct: 416 MIGGSILAVILLIVVMIGEKRRHEQLLQ 443

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

 Score = 59.0 bits (141), Expect = 5e-10
 Identities = 51/421 (12%), Positives = 106/421 (25%), Gaps = 36/421 (8%)

Query: 51  PHVLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGW 110
            +  +  L  F + + +G    P   I L    + +    G++ +     + +   L G 
Sbjct: 7   TNFWMFGLFFFFYFFIMGAYF-PFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGL 65

Query: 111 IADGVGRRRAFQLCALPMIIGASISA----TTRNLIGMLLGRFVVGTGMGLGPTVAALYV 166
           ++D +G R+        M++  +              +L+G  V G  +G      A  V
Sbjct: 66  LSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAV 125

Query: 167 TEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMV 226
                   R +   F +      +  +L   I         +  FW+    A IL + + 
Sbjct: 126 EAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLF 185

Query: 227 FCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRH 286
           F                A      L                            EL     
Sbjct: 186 FAKTDAPSSATVANAVGANHSAFSL------------------------KLALELFRQPK 221

Query: 287 FRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMD 346
              + +     +            F +S F +    + +      +       +    + 
Sbjct: 222 LWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGE-----LLNASIM 276

Query: 347 KLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSL 406
                 + +    +  +     ++        + S    V    + +             
Sbjct: 277 FFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFK- 335

Query: 407 LLPEIFPSRIRAKAMAVCMSVHWVINFFVG-LLFLRLLEQLGPQLLYSIFGTFCLMAVAF 465
            +   F  R  A    VC      +      +L   + E +G Q  Y + G   L     
Sbjct: 336 YITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLI 395

Query: 466 V 466
            
Sbjct: 396 S 396

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	489
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	100.0
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.93
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.2
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	98.98

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=9.8e-35  Score=287.91  Aligned_cols=410  Identities=12%  Similarity=0.054  Sum_probs=255.6

Q ss_pred             HHHHHHHHhhhhccceeeccchhhhhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHH
Q 011277           53 VLVATLSSFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGA  132 (489)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~  132 (489)
                      ...+.++.+....+...++...|.+. |+|++.+  +.|++.+.+.+++.++++++|+++||+|||+++..+.++.+++.
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~p~~~-~~g~s~~--~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~  103 (447)
T d1pw4a_          27 FLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSRG--DLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVM  103 (447)
T ss_dssp             HHHHHHHHHHHHHHHTSHHHHHHHTT-SSTTCSS--CHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-HhCcCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHH
Confidence            33444444555555555666677665 5788755  46899999999999999999999999999999999999999999


Q ss_pred             HHHhhc----chHHHHHHHHHHHhhhcccccccccccccccCCcccchhhhhHHHHHHHHHHHHHHHhhcccccCCchhH
Q 011277          133 SISATT----RNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGWWR  208 (489)
Q Consensus       133 ~l~~~~----~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~wr  208 (489)
                      ++++.+    .+++.+++.|+++|++.|...+....+++|++|+++|+++.++++.+..+|..++++++.......++||
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~  183 (447)
T d1pw4a_         104 LFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWH  183 (447)
T ss_dssp             HHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCST
T ss_pred             hhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhhhccc
Confidence            988876    4778899999999999999999999999999999999999999999999998888877665544444579


Q ss_pred             HHHHHHHHHHHHH-HHHhhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccch
Q 011277          209 ICFWVSIVPAAIL-CLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHF  287 (489)
Q Consensus       209 ~~f~~~~i~~~~~-~~~~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (489)
                      +.|++..+..++. .+...+.+|+|+........++ ++         ...+.  ..++.+++........+..++++..
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---------~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  251 (447)
T d1pw4a_         184 AALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEY-KN---------DYPDD--YNEKAEQELTAKQIFMQYVLPNKLL  251 (447)
T ss_dssp             TCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTT-CC---------C---------------CCTHHHHHHTSSCHHH
T ss_pred             ccchhhhhhHHHHHHHHHHhcccchhhcccchhhhh-hh---------hcccc--hhhccccccchhhHHHHHHHcCchH
Confidence            8888765555444 3444556666543211111000 00         00000  0000111111222233444444444


Q ss_pred             hHHHHHHHHHHHHhhhhHHHHHHhHHHHHH-hcCCC---cchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHH
Q 011277          288 RVVFIGSTLFALQQLSGINAIFYFSSSVFK-SAGLS---SGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAV  363 (489)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i  363 (489)
                      +......++....    ......+.+..+. ..+.+   .+.......+..+++.++++++.||++||...........+
T Consensus       252 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  327 (447)
T d1pw4a_         252 WYIAIANVFVYLL----RYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTL  327 (447)
T ss_dssp             HHHHHHHHHHHHH----HHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHH
T ss_pred             HHHHHHhhhhhhh----hhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHH
Confidence            3333222222111    1222223333332 23443   23556667788889999999999999987654443333332


Q ss_pred             HHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHHHHHHHH-HHHHHHHHHH
Q 011277          364 SMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMSVHWVIN-FFVGLLFLRL  442 (489)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~-~~~~~~~~~l  442 (489)
                      ..........   ......+......+..++. ..+..+....+..|.+|++.|+++.|+.+.++++++ .++|.+.+.+
T Consensus       328 ~~~~~~~~~~---~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~  403 (447)
T d1pw4a_         328 VTIATIVYWM---NPAGNPTVDMICMIVIGFL-IYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYT  403 (447)
T ss_dssp             HHHHHHHTTS---CCTTCHHHHHHHHHHHHHH-HTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHh---cccccHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2222221111   1111222222222222221 222345566788999999999999999999988855 4567777888


Q ss_pred             HHHhCCchhhHHHHHHHHHHHHHHHhhcccCCCCCHHHHHHhhc
Q 011277          443 LEQLGPQLLYSIFGTFCLMAVAFVKRNVVETKGKSLQEIEIALL  486 (489)
Q Consensus       443 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~et~~~~~~e~~~~~~  486 (489)
                      .+..|+...+.+++++++++.++.....++.|+| .+|+.++.+
T Consensus       404 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r-~~~~~~e~~  446 (447)
T d1pw4a_         404 VDFFGWDGGFMVMIGGSILAVILLIVVMIGEKRR-HEQLLQELV  446 (447)
T ss_dssp             HHSSCSHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHGGGGGSC
T ss_pred             HHHhChHHHHHHHHHHHHHHHHHHHHHHHhcccc-HHHHHHhCC
Confidence            8888988888877777776666555444443433 344444443

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.93  E-value=1.1e-24  Score=211.68  Aligned_cols=386  Identities=14%  Similarity=0.025  Sum_probs=234.0

Q ss_pred             HHHHHHHhhhhccceeeccchhh-hhhhcCCCCchhHHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHH
Q 011277           54 LVATLSSFLFGYHLGVVNEPLES-ISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGA  132 (489)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~  132 (489)
                      .++.+..+...+..+...+.+|. +.+++|.+  ..+.|++.+.+.+++.++++++|+++||+|||++++++..+..++.
T Consensus        10 ~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s--~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~   87 (417)
T d1pv7a_          10 WMFGLFFFFYFFIMGAYFPFFPIWLHDINHIS--KSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMF   87 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHH
Confidence            34444555555566666777776 45667876  4467999999999999999999999999999999999999999988


Q ss_pred             HHHhhcchHHHH----HHHHHHHhhhcccccccccccccccCCc--ccchhhhhHHHHHHHHHHHHHHHhhcccccCCch
Q 011277          133 SISATTRNLIGM----LLGRFVVGTGMGLGPTVAALYVTEVSPP--FVRGTYGAFIQIATCLGLMGSLLIGIPVKEIAGW  206 (489)
Q Consensus       133 ~l~~~~~~~~~l----~~~R~l~G~g~g~~~~~~~~~i~e~~~~--~~Rg~~~~~~~~~~~~G~~~g~~~~~~l~~~~~~  206 (489)
                      .+.+...+....    ++.+.+.+.+.+...........+..++  +++.+..+........+...++.++..+.+. +|
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~  166 (417)
T d1pv7a_          88 APFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTI-NN  166 (417)
T ss_dssp             HHHHHHTHHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHH-CH
T ss_pred             HHHHHhhhhhhHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhccccccccccccccccc-cc
Confidence            888887776654    3455555555555444443333333333  2344455666667777777777777665543 33


Q ss_pred             hHHHHHHHHHHHHHHHHHhhhccCChHHHHhcCCHHHHHHHHHHHhCCCchhHHHHHHHhhccCCCCcchhHHHhhhccc
Q 011277          207 WRICFWVSIVPAAILCLAMVFCAESPHWLYKKGRTAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRH  286 (489)
Q Consensus       207 wr~~f~~~~i~~~~~~~~~~~~~Esp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (489)
                      |+..+.......+...+..+..+|+|+.   +.+.++ ++                     ++.+........+..+.+.
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~---------------------~~~~~~~~~~~~~~~~~~~  221 (417)
T d1pv7a_         167 QFVFWLGSGCALILAVLLFFAKTDAPSS---ATVANA-VG---------------------ANHSAFSLKLALELFRQPK  221 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSSCCCSCSS---SCSSHH-HH---------------------SCCCCCCHHHHHHHTTSSH
T ss_pred             cccccchhhHHHHHHHHHHHHhcccccc---hhhhhh-hh---------------------hhccccccccccccccccc
Confidence            4444444445455555556667776531   111111 00                     0011111111222222232


Q ss_pred             hhHHHHHHHHHHHHhhhhHHHHHHhHHHHHHhcCCC-------cchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhH
Q 011277          287 FRVVFIGSTLFALQQLSGINAIFYFSSSVFKSAGLS-------SGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFF  359 (489)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~  359 (489)
                      .+.................    .............       .+.......++..++..+.+++.||.++|+.+..+..
T Consensus       222 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~  297 (417)
T d1pv7a_         222 LWFLSLYVIGVSCTYDVFD----QQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGT  297 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHH----HHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHH
T ss_pred             ccchhhhhHHHHHHHHhhh----ccccccccccccccccchhhhcccccccccccccchhhhhhhhcccccccchhhhHH
Confidence            2222222111111111101    1111111111111       1234455567778888899999999999998887776


Q ss_pred             HHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccccccccccccCCchhhhhHHHHHHH-HHHHHHHHHHHH
Q 011277          360 SMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKAMAVCMS-VHWVINFFVGLL  438 (489)
Q Consensus       360 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~-~~~~~~~~~~~~  438 (489)
                      ..+++.......     ++ .  +..+...++.+++.+. ..+....+..|.+|++.|+++.++... ...++..++|.+
T Consensus       298 ~~~~~~~~~~~~-----~~-~--~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~  368 (417)
T d1pv7a_         298 IMSVRIIGSSFA-----TS-A--LEVVILKTLHMFEVPF-LLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVL  368 (417)
T ss_dssp             HHHHHHHHHHTC-----CC-H--HHHHHHHHHHHHHHHH-HHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHH
T ss_pred             HHHHhhhccccc-----cc-c--chhhHHHHHHHHHHHH-HHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666655443211     11 1  1112222222333222 234556688999999999999998654 456888899999


Q ss_pred             HHHHHHHhCCchhhHHHHHHHHHHHHHHHhhcccCCCCCHHH
Q 011277          439 FLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNVVETKGKSLQE  480 (489)
Q Consensus       439 ~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~et~~~~~~e  480 (489)
                      .+.+.+..|+...|.++++++++..++..+.+++++..++.+
T Consensus       369 ~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~r  410 (417)
T d1pv7a_         369 AGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLSLLR  410 (417)
T ss_dssp             HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCCSSCTTHHH
T ss_pred             HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhH
Confidence            999999999988998999888888877777888888877744

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.20  E-value=1.6e-11  Score=117.37  Aligned_cols=136  Identities=13%  Similarity=-0.009  Sum_probs=114.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhhHhhhhhchhhHHHHHhHHHHHHHHHHHhhcchHHHHHHHHHHHhhhcccccccccccccc
Q 011277           89 AEGLVVSMCLGGAFIGSTLSGWIADGVGRRRAFQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTE  168 (489)
Q Consensus        89 ~~~~~~s~~~~g~~ig~~~~g~l~Dr~GRr~~~~~~~~~~~i~~~l~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e  168 (489)
                      ..+...+...++..++..+.+++.||+|||+++..+.++.+++.++....++.+.+.+.-++.|++.+...+....++.|
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~  339 (417)
T d1pv7a_         260 VFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITS  339 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34566667777888999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCcccchhhhhHH-HHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHHHHHh
Q 011277          169 VSPPFVRGTYGAFI-QIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAM  225 (489)
Q Consensus       169 ~~~~~~Rg~~~~~~-~~~~~~G~~~g~~~~~~l~~~~~~wr~~f~~~~i~~~~~~~~~  225 (489)
                      .+|+++||+..+.. +....+|..+++.+++.+.+..| ++..|++.++..++..+..
T Consensus       340 ~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g-~~~~~~~~~~~~~~~~~~~  396 (417)
T d1pv7a_         340 QFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIG-FQGAYLVLGLVALGFTLIS  396 (417)
T ss_dssp             HSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHH
T ss_pred             HCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHH
Confidence            99999999999874 56778888888888777777667 5888877555444444433

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=98.98  E-value=4.1e-09  Score=101.87  Aligned_cols=146  Identities=13%  Similarity=0.043  Sum_probs=99.1

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHhhhcCCchhHHHhhHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHhcCccc
Q 011277          323 SGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFSMAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGP  402 (489)
Q Consensus       323 ~~~~~~~~~i~~~~g~~~~g~l~dr~grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  402 (489)
                      .++......++..++.++.|+++||+|||+++..+.++..++.++........ .. .... . ...++.+++.+. ..+
T Consensus        61 ~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~-~-~~~~~~g~~~~~-~~~  135 (447)
T d1pw4a_          61 LGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWAT-SS-IAVM-F-VLLFLCGWFQGM-GWP  135 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHH-SS-SSHH-H-HHHHHHHHHHHH-THH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhh-hh-HHHH-H-HHHHHHHHhhhh-hhh
Confidence            45677778899999999999999999999999888877777666544322111 01 1111 1 111222222221 224


Q ss_pred             cccccccccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHhhcccC
Q 011277          403 VPSLLLPEIFPSRIRAKAMAVCMSVHWVINFFVGLLFLRLLEQL-GPQLLYSIFGTFCLMAVAFVKRNVVET  473 (489)
Q Consensus       403 ~~~~~~~e~~p~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~et  473 (489)
                      ....+..|.+|++.|++++++.+....++..+++.+........ ++.+.+.+.+.++++..++....++|+
T Consensus       136 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~  207 (447)
T d1pw4a_         136 PCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDT  207 (447)
T ss_dssp             HHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCS
T ss_pred             HHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhhhcccccchhhhhhHHHHHHHHHHhcccc
Confidence            44568899999999999999999999999888887766655544 667777777777766666555555544