Citrus Sinensis ID: 011323
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 488 | 2.2.26 [Sep-21-2011] | |||||||
| Q0WLC6 | 1089 | Pentatricopeptide repeat- | yes | no | 0.977 | 0.438 | 0.719 | 0.0 | |
| Q76C99 | 791 | Protein Rf1, mitochondria | N/A | no | 0.924 | 0.570 | 0.267 | 4e-36 | |
| Q9LSL9 | 915 | Pentatricopeptide repeat- | no | no | 0.817 | 0.436 | 0.279 | 1e-35 | |
| Q9SIC9 | 918 | Pentatricopeptide repeat- | no | no | 0.872 | 0.464 | 0.273 | 2e-35 | |
| Q9SXD8 | 634 | Pentatricopeptide repeat- | no | no | 0.856 | 0.659 | 0.248 | 1e-34 | |
| Q9C8T7 | 559 | Pentatricopeptide repeat- | no | no | 0.856 | 0.747 | 0.248 | 1e-34 | |
| Q9SR00 | 602 | Pentatricopeptide repeat- | no | no | 0.911 | 0.739 | 0.256 | 1e-34 | |
| Q9FIX3 | 747 | Pentatricopeptide repeat- | no | no | 0.875 | 0.571 | 0.261 | 2e-34 | |
| Q9SXD1 | 630 | Pentatricopeptide repeat- | no | no | 0.813 | 0.630 | 0.259 | 2e-34 | |
| Q9FMD3 | 504 | Pentatricopeptide repeat- | no | no | 0.752 | 0.728 | 0.272 | 4e-34 |
| >sp|Q0WLC6|PP349_ARATH Pentatricopeptide repeat-containing protein At4g34830, chloroplastic OS=Arabidopsis thaliana GN=At4g34830/At4g34820 PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 738 bits (1906), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/477 (71%), Positives = 406/477 (85%)
Query: 6 KNMLQFPYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHA 65
++M QFP N + N E +YNRL+R GRI +CI LLED++++ LLDMDK+YHA
Sbjct: 381 ESMPQFPARNFELHNSNGRSPETSDAYNRLLRDGRIKDCISLLEDLDQRDLLDMDKIYHA 440
Query: 66 RFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKA 125
FF CK Q+A+KEAFRF KL+ NPT+STFNMLMSVCASS+D EGA VLRLVQE+G+ A
Sbjct: 441 SFFKACKKQRAVKEAFRFTKLILNPTMSTFNMLMSVCASSQDIEGARGVLRLVQESGMTA 500
Query: 126 DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY 185
DCKLYTTLI++CAKSGKVDAMFEVFH+M N+G+E N+HT+GALIDGCA+AGQVAKAFGAY
Sbjct: 501 DCKLYTTLISSCAKSGKVDAMFEVFHQMSNSGVEANLHTFGALIDGCARAGQVAKAFGAY 560
Query: 186 GIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 245
GI+RSKNVKPDRVVFNALI+ACGQSGAVDRAFDVLAEM AE HP+DPDHI+IGALMKAC
Sbjct: 561 GILRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHISIGALMKACC 620
Query: 246 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 305
NAGQV+RA+EVY+MIHKY I+GTPEVYTIA+N CS++GDW+FACS+Y DM +K V PDEV
Sbjct: 621 NAGQVERAKEVYQMIHKYGIRGTPEVYTIAVNSCSKSGDWDFACSIYKDMKEKDVTPDEV 680
Query: 306 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 365
F SALID AGHA ++ AF ILQ+AK+QGI +G ISYSSLMGAC NAK+W+KALELYE +
Sbjct: 681 FFSALIDVAGHAKMLDEAFGILQDAKSQGIRLGTISYSSLMGACCNAKDWKKALELYEKI 740
Query: 366 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 425
KSIKL+PT+STMNALITALC+G+QLPK ME L ++K+LGL PNTITYS+L++A ERKDD
Sbjct: 741 KSIKLRPTISTMNALITALCEGNQLPKAMEYLDEIKTLGLKPNTITYSMLMLASERKDDF 800
Query: 426 EVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKW 482
EV LLSQAK DGV PNL+M +CI +C RR+EKA E V+SF SGRPQIENKW
Sbjct: 801 EVSFKLLSQAKGDGVSPNLIMCRCITSLCKRRFEKACAGGEPVVSFKSGRPQIENKW 857
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q76C99|RF1_ORYSI Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica GN=Rf1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 153 bits (386), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 125/468 (26%), Positives = 219/468 (46%), Gaps = 17/468 (3%)
Query: 28 QLHSYNRLIR----QGRISECIDLLEDM--ERKGLLDMDKVYHAR----FFNVCKSQKAI 77
+ SYN L++ + R E ++LL M +R G D V + FF S KA
Sbjct: 157 NVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAY 216
Query: 78 KEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137
P + T+N +++ ++ + A +VL + + G+ DC Y +++
Sbjct: 217 STYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGY 276
Query: 138 AKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDR 197
SG+ +M + G+EP+V TY L+D K G+ +A + M + +KP+
Sbjct: 277 CSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEI 336
Query: 198 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY 257
+ L+ GA+ +L M + + PDH L+ A A G+VD+A V+
Sbjct: 337 TTYGTLLQGYATKGALVEMHGLLDLMVR--NGIHPDHYVFSILICAYAKQGKVDQAMLVF 394
Query: 258 KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 317
+ + + Y I ++G E A ++ M +G+ P + ++LI
Sbjct: 395 SKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTC 454
Query: 318 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 377
K E A E++ E ++GI + I ++S++ + ++ +L+E M I +KP V T
Sbjct: 455 NKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITY 514
Query: 378 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437
N LI C ++ + M++LS M S+GL PNT+TYS L+ + +E L+L + +
Sbjct: 515 NTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMES 574
Query: 438 DGVIPNLVMFKCII-GMC-SRRYEKARTLNEHVLSFNSGRPQIENKWY 483
GV P+++ + I+ G+ +RR A+ L +V SG QIE Y
Sbjct: 575 SGVSPDIITYNIILQGLFQTRRTAAAKEL--YVRITESG-TQIELSTY 619
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Reduces the expression of the cytoplasmic male sterility (CMS)-associated mitochondrial gene ORF79, encoding a cytotoxic peptide. Can restore male fertility by blocking ORF79 production via endonucleolytic cleavage of dicistronic ATP6/ORF79 mRNA. Promotes the editing of ATP6 mRNAs independently of its cleavage function. Oryza sativa subsp. indica (taxid: 39946) |
| >sp|Q9LSL9|PP445_ARATH Pentatricopeptide repeat-containing protein At5g65560 OS=Arabidopsis thaliana GN=At5g65560 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 151 bits (381), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 115/411 (27%), Positives = 202/411 (49%), Gaps = 12/411 (2%)
Query: 47 LLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTLSTFNMLM-SV 101
+ +M KG + Y +C +++ I EA F + + PT+ T+ +L+ S+
Sbjct: 275 VFNEMPLKGCRRNEVAYTHLIHGLCVARR-IDEAMDLFVKMKDDECFPTVRTYTVLIKSL 333
Query: 102 CASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN 161
C S + SE A +++ ++E G+K + YT LI + K + E+ +M+ G+ PN
Sbjct: 334 CGSERKSE-ALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPN 392
Query: 162 VHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLA 221
V TY ALI+G K G + A +M S+ + P+ +N LI +S V +A VL
Sbjct: 393 VITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCKSN-VHKAMGVLN 451
Query: 222 EMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ 281
+M V PD +T +L+ +G D A + +++ + YT I+ +
Sbjct: 452 KMLE--RKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCK 509
Query: 282 TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIIS 341
+ E AC ++D + +KGV P+ V +ALID AGKV+ A +L++ ++ ++
Sbjct: 510 SKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLT 569
Query: 342 YSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM 400
+++L+ G C++ K ++A L E M I L+PTVST LI L M
Sbjct: 570 FNALIHGLCADGK-LKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQM 628
Query: 401 KSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
S G P+ TY+ + R+ + ++++ +E+GV P+L + +I
Sbjct: 629 LSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLI 679
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SIC9|PP178_ARATH Pentatricopeptide repeat-containing protein At2g31400, chloroplastic OS=Arabidopsis thaliana GN=At2g31400 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 150 bits (380), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 126/461 (27%), Positives = 207/461 (44%), Gaps = 35/461 (7%)
Query: 16 GKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK 75
G + N + S + +Y R G E I + M+ GL Y+A K
Sbjct: 262 GGYGNTVYAFSALISAYGR---SGLHEEAISVFNSMKEYGLRPNLVTYNAVIDACGKGGM 318
Query: 76 AIKEAFRFFKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYT 131
K+ +FF + P TFN L++VC+ E A + + ++ D Y
Sbjct: 319 EFKQVAKFFDEMQRNGVQPDRITFNSLLAVCSRGGLWEAARNLFDEMTNRRIEQDVFSYN 378
Query: 132 TLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK 191
TL+ K G++D FE+ +M I PNV +Y +IDG AKAG+ +A +G MR
Sbjct: 379 TLLDAICKGGQMDLAFEILAQMPVKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYL 438
Query: 192 NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD 251
+ DRV +N L++ + G + A D+L EM A V + D +T AL+ G+ D
Sbjct: 439 GIALDRVSYNTLLSIYTKVGRSEEALDILREM-ASVG-IKKDVVTYNALLGGYGKQGKYD 496
Query: 252 RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 311
++V+ + + ++ Y+ I+ S+ G ++ A ++ + G+ D V SALI
Sbjct: 497 EVKKVFTEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEIFREFKSAGLRADVVLYSALI 556
Query: 312 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK-------------- 357
D G V +A ++ E +GIS +++Y+S++ A + +
Sbjct: 557 DALCKNGLVGSAVSLIDEMTKEGISPNVVTYNSIIDAFGRSATMDRSADYSNGGSLPFSS 616
Query: 358 ----ALELYEHMKSIKLKPTVST-MNALITALCDG--DQLPKTMEVLSDMKSLGLCPNTI 410
AL E + I+L ++T N T C+ +L +EV M L + PN +
Sbjct: 617 SALSALTETEGNRVIQLFGQLTTESNNRTTKDCEEGMQELSCILEVFRKMHQLEIKPNVV 676
Query: 411 TYSILLVACERKDDVEVGLMLLSQA-----KEDGVIPNLVM 446
T+S +L AC R + E MLL + K GV+ L+M
Sbjct: 677 TFSAILNACSRCNSFEDASMLLEELRLFDNKVYGVVHGLLM 717
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SXD8|PPR90_ARATH Pentatricopeptide repeat-containing protein At1g62590 OS=Arabidopsis thaliana GN=At1g62590 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 148 bits (373), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 106/427 (24%), Positives = 204/427 (47%), Gaps = 9/427 (2%)
Query: 40 RISECIDLLEDMERKGL----LDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTF 95
RIS+ + L++ M G + + H F + K+ +A+ R + P L T+
Sbjct: 170 RISDAVALVDQMVEMGYRPDTITFTTLIHGLFLH-NKASEAVALVDRMVQRGCQPNLVTY 228
Query: 96 NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN 155
++++ D++ A +L ++ A ++AD ++ T+I + K VD +F EM
Sbjct: 229 GVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMET 288
Query: 156 AGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDR 215
GI PNV TY +LI G+ + A M K + P+ V FNALI A + G
Sbjct: 289 KGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVE 348
Query: 216 AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIA 275
A + +M +DPD T +L+ ++D+A+++++ + + Y
Sbjct: 349 AEKLYDDMIKR--SIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTL 406
Query: 276 INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 335
I ++ E ++ +M+ +G++ D V + LI H G + A ++ ++ + G+
Sbjct: 407 IKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGV 466
Query: 336 SVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 394
I++YS L+ G C+N K +KALE++++M+ ++K + +I +C ++
Sbjct: 467 PPDIMTYSILLDGLCNNGK-LEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGW 525
Query: 395 EVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 454
++ + G+ PN +TY+ ++ K ++ LL + KEDG +PN + +I
Sbjct: 526 DLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAH 585
Query: 455 SRRYEKA 461
R +KA
Sbjct: 586 LRDGDKA 592
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9C8T7|PP101_ARATH Pentatricopeptide repeat-containing protein At1g63330 OS=Arabidopsis thaliana GN=At1g63330 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 148 bits (373), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 106/427 (24%), Positives = 205/427 (48%), Gaps = 9/427 (2%)
Query: 40 RISECIDLLEDMERKGL----LDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTF 95
RIS+ + L++ M G + + H F + K+ +A+ R + P L T+
Sbjct: 95 RISDAVALVDQMVEMGYRPDTITFTTLIHGLFLH-NKASEAVALVDRMVQRGCQPNLVTY 153
Query: 96 NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN 155
++++ D + AF +L ++ A ++AD ++ T+I + K VD +F EM
Sbjct: 154 GVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMET 213
Query: 156 AGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDR 215
GI PNV TY +LI G+ + A M K + P+ V FNALI A + G
Sbjct: 214 KGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVE 273
Query: 216 AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIA 275
A + +M +DPD T +L+ ++D+A+++++ + + + Y
Sbjct: 274 AEKLHDDMIK--RSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTL 331
Query: 276 INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 335
I ++ E ++ +M+ +G++ D V + LI H G + A ++ ++ + G+
Sbjct: 332 IKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGV 391
Query: 336 SVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 394
I++YS L+ G C+N K +KALE++++M+ ++K + +I +C ++
Sbjct: 392 PPDIMTYSILLDGLCNNGK-LEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGW 450
Query: 395 EVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 454
++ + G+ PN +TY+ ++ K ++ LL + KEDG +P+ + +I
Sbjct: 451 DLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPDSGTYNTLIRAH 510
Query: 455 SRRYEKA 461
R +KA
Sbjct: 511 LRDGDKA 517
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SR00|PP213_ARATH Pentatricopeptide repeat-containing protein At3g04760, chloroplastic OS=Arabidopsis thaliana GN=At3g04760 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 148 bits (373), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 118/460 (25%), Positives = 217/460 (47%), Gaps = 15/460 (3%)
Query: 26 SEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK 85
++ L ++R R G E + LLE M RKG + D + + + + I +A R +
Sbjct: 90 TQMLKIFHRSCRSGNYIESLHLLETMVRKG-YNPDVILCTKLIKGFFTLRNIPKAVRVME 148
Query: 86 LVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
++ P + +N L++ + A +VL ++ D Y +I + GK
Sbjct: 149 ILEKFGQPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGK 208
Query: 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202
+D +V +++++ +P V TY LI+ G V +A M S+ +KPD +N
Sbjct: 209 LDLALKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNT 268
Query: 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262
+I + G VDRAF+++ N E+ +PD I+ L++A N G+ + ++ M
Sbjct: 269 IIRGMCKEGMVDRAFEMVR--NLELKGCEPDVISYNILLRALLNQGKWEEGEKL--MTKM 324
Query: 263 YNIKGTPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV 320
++ K P V Y+I I + G E A ++ M +KG+ PD LI G++
Sbjct: 325 FSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRL 384
Query: 321 EAAFEILQEAKNQGISVGIISYSSLMGA-CSNAKNWQKALELYEHMKSIKLKPTVSTMNA 379
+ A E L+ + G I++Y++++ C N K Q ALE++ + + P S+ N
Sbjct: 385 DVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQ-ALEIFGKLGEVGCSPNSSSYNT 443
Query: 380 LITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDG 439
+ +AL + + ++ +M S G+ P+ ITY+ ++ R+ V+ LL +
Sbjct: 444 MFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSMISCLCREGMVDEAFELLVDMRSCE 503
Query: 440 VIPNLVMFKCI-IGMC-SRRYEKARTLNEHVLSFNSGRPQ 477
P++V + + +G C + R E A + E ++ N RP
Sbjct: 504 FHPSVVTYNIVLLGFCKAHRIEDAINVLESMVG-NGCRPN 542
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 147 bits (371), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 116/443 (26%), Positives = 207/443 (46%), Gaps = 16/443 (3%)
Query: 31 SYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV--- 87
SY+RL I + + ++ + G + Y+A +S++ I A FK +
Sbjct: 143 SYSRL---SLIDKALSIVHLAQAHGFMPGVLSYNAVLDATIRSKRNISFAENVFKEMLES 199
Query: 88 -PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM 146
+P + T+N+L+ + + + A + ++ G + Y TLI K K+D
Sbjct: 200 QVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDG 259
Query: 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA 206
F++ M G+EPN+ +Y +I+G + G++ + M + D V +N LI
Sbjct: 260 FKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKG 319
Query: 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266
+ G +A + AEM H + P IT +L+ + AG ++RA E + +
Sbjct: 320 YCKEGNFHQALVMHAEMLR--HGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLC 377
Query: 267 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH--AGKVEAAF 324
YT ++ SQ G A V +M G P V +ALI+ GH GK+E A
Sbjct: 378 PNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALIN--GHCVTGKMEDAI 435
Query: 325 EILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384
+L++ K +G+S ++SYS+++ + + +AL + M +KP T ++LI
Sbjct: 436 AVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGF 495
Query: 385 CDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL 444
C+ + + ++ +M +GL P+ TY+ L+ A + D+E L L ++ E GV+P++
Sbjct: 496 CEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDV 555
Query: 445 VMFKCIIGMC---SRRYEKARTL 464
V + +I SR E R L
Sbjct: 556 VTYSVLINGLNKQSRTREAKRLL 578
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SXD1|PPR91_ARATH Pentatricopeptide repeat-containing protein At1g62670, mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 147 bits (371), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 107/412 (25%), Positives = 201/412 (48%), Gaps = 15/412 (3%)
Query: 40 RISECIDLLEDMERKGL----LDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTF 95
RISE + L++ M G + + + H F + K+ +A+ R P L T+
Sbjct: 166 RISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLH-NKASEAMALIDRMVAKGCQPDLVTY 224
Query: 96 NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN 155
++++ D++ AF +L +++ L+ +Y T+I K +D +F EM
Sbjct: 225 GVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMET 284
Query: 156 AGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDR 215
GI PNV TY +LI G+ + A M + + PD F+ALI A + G +
Sbjct: 285 KGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVE 344
Query: 216 AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK-MIHKYNIKGTPEV--Y 272
A + EM +DP +T +L+ ++D A+++++ M+ K+ P+V Y
Sbjct: 345 AEKLYDEMVK--RSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCF---PDVVTY 399
Query: 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332
I + E V+ +M+++G++ + V + LI AG + A EI +E +
Sbjct: 400 NTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVS 459
Query: 333 QGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 391
G+ I++Y++L+ G C N K +KA+ ++E+++ K++PT+ T N +I +C ++
Sbjct: 460 DGVPPNIMTYNTLLDGLCKNGK-LEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVE 518
Query: 392 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443
++ ++ G+ P+ + Y+ ++ RK E L + KEDG +PN
Sbjct: 519 DGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPN 570
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FMD3|PP389_ARATH Pentatricopeptide repeat-containing protein At5g16640, mitochondrial OS=Arabidopsis thaliana GN=At5g16640 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 146 bits (368), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 102/375 (27%), Positives = 178/375 (47%), Gaps = 8/375 (2%)
Query: 73 SQKAIKEAF--RFFKLVPNPTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKL 129
SQ ++ +F + KL P++ TF L++ C + + + ++V G K + +
Sbjct: 130 SQLSLALSFLGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDALYMFDQMVG-MGYKPNVVI 188
Query: 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189
Y T+I KS +VD ++ + M GI P+V TY +LI G +G+ + A M
Sbjct: 189 YNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDATRMVSCMT 248
Query: 190 SKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 249
+ + PD FNALI AC + G V A + EM +DPD +T L+ +
Sbjct: 249 KREIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIR--RSLDPDIVTYSLLIYGLCMYSR 306
Query: 250 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 309
+D A E++ + Y+I IN ++ E ++ +M+++GV+ + V +
Sbjct: 307 LDEAEEMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTI 366
Query: 310 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSI 368
LI AGK+ A EI + G+ II+Y+ L+ G C N K +KAL + M+
Sbjct: 367 LIQGYCRAGKLNVAEEIFRRMVFCGVHPNIITYNVLLHGLCDNGK-IEKALVILADMQKN 425
Query: 369 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVG 428
+ + T N +I +C ++ ++ + GL P+ TY+ +++ +K
Sbjct: 426 GMDADIVTYNIIIRGMCKAGEVADAWDIYCSLNCQGLMPDIWTYTTMMLGLYKKGLRREA 485
Query: 429 LMLLSQAKEDGVIPN 443
L + KEDG++PN
Sbjct: 486 DALFRKMKEDGILPN 500
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 488 | ||||||
| 255586885 | 1129 | pentatricopeptide repeat-containing prot | 0.987 | 0.426 | 0.782 | 0.0 | |
| 359474892 | 1115 | PREDICTED: pentatricopeptide repeat-cont | 0.977 | 0.427 | 0.775 | 0.0 | |
| 297744686 | 1550 | unnamed protein product [Vitis vinifera] | 0.977 | 0.307 | 0.775 | 0.0 | |
| 449458656 | 1108 | PREDICTED: pentatricopeptide repeat-cont | 0.979 | 0.431 | 0.719 | 0.0 | |
| 224080562 | 665 | predicted protein [Populus trichocarpa] | 0.885 | 0.649 | 0.807 | 0.0 | |
| 110740372 | 1089 | hypothetical protein [Arabidopsis thalia | 0.977 | 0.438 | 0.719 | 0.0 | |
| 110741791 | 1089 | hypothetical protein [Arabidopsis thalia | 0.977 | 0.438 | 0.719 | 0.0 | |
| 145353124 | 1089 | pentatricopeptide repeat-containing prot | 0.977 | 0.438 | 0.719 | 0.0 | |
| 297798436 | 1094 | binding protein [Arabidopsis lyrata subs | 0.977 | 0.436 | 0.712 | 0.0 | |
| 356529805 | 1092 | PREDICTED: pentatricopeptide repeat-cont | 0.907 | 0.405 | 0.756 | 0.0 |
| >gi|255586885|ref|XP_002534048.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223525928|gb|EEF28334.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 828 bits (2139), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 377/482 (78%), Positives = 431/482 (89%)
Query: 1 MQDGGKNMLQFPYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMD 60
+QD N+ +FPYPNG H+ +EQ+H YNRL+R GR++EC+DLLEDMER+GLLDM
Sbjct: 415 IQDEHTNLPEFPYPNGVHSTNKDHKAEQVHGYNRLLRDGRLAECVDLLEDMERRGLLDMS 474
Query: 61 KVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQE 120
K+YHA+FF +CK QKA+KEAFRF KLVPNP+LSTFNMLMSVC+SS+DS+GAF+VLRL Q
Sbjct: 475 KIYHAKFFKICKIQKAVKEAFRFCKLVPNPSLSTFNMLMSVCSSSQDSDGAFEVLRLAQG 534
Query: 121 AGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAK 180
AGLKADCKLYTTLI+TCAKSGKVDAMFEVFHEMVNAG+EPNVHTYG+LIDGCAKAGQ+AK
Sbjct: 535 AGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEPNVHTYGSLIDGCAKAGQMAK 594
Query: 181 AFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGAL 240
AFGAYGI+RSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEM AE HP+DPDHIT+GAL
Sbjct: 595 AFGAYGILRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMGAETHPIDPDHITVGAL 654
Query: 241 MKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGV 300
MKACA AGQVDRA+EVY M+HKYNIKGTPEVYTIA+N CSQTGDWEFA SVYDDMT+KGV
Sbjct: 655 MKACAKAGQVDRAKEVYNMLHKYNIKGTPEVYTIAVNFCSQTGDWEFARSVYDDMTRKGV 714
Query: 301 IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALE 360
PDE+FLSAL+D AGHAG V+ AFE LQEA+ QG +GI+ YSSLMGACSNAKNWQKALE
Sbjct: 715 APDEMFLSALVDVAGHAGLVDIAFETLQEARTQGTQLGIVPYSSLMGACSNAKNWQKALE 774
Query: 361 LYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACE 420
LYE +K+IKLKPTVSTMNAL+TALCDGDQL K +E LS+MKS GLCPN +TYSILLVA E
Sbjct: 775 LYEDIKAIKLKPTVSTMNALMTALCDGDQLQKALETLSEMKSFGLCPNIVTYSILLVASE 834
Query: 421 RKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIEN 480
RKDD++ G MLLSQAKED + P +M+KCIIGMC RRY+KA +L E +LSF+SGRPQI+N
Sbjct: 835 RKDDLDAGDMLLSQAKEDCITPTFLMYKCIIGMCLRRYKKACSLGESILSFDSGRPQIKN 894
Query: 481 KW 482
+W
Sbjct: 895 EW 896
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359474892|ref|XP_002276432.2| PREDICTED: pentatricopeptide repeat-containing protein At4g34830, chloroplastic-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 800 bits (2067), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 370/477 (77%), Positives = 424/477 (88%)
Query: 6 KNMLQFPYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHA 65
+N+ QFP NG + SE+ +YNRL+ +GR+S+CI LLEDME+ GLLDMDKVYHA
Sbjct: 406 RNLSQFPLSNGMTVKEKYHDSEKFSAYNRLLSEGRLSDCIQLLEDMEKMGLLDMDKVYHA 465
Query: 66 RFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKA 125
+FF +C+SQKA+ EAFRF KL+P PTLSTFNMLMSVCA+S+DS GAFQVL+LV+EAGLKA
Sbjct: 466 KFFKICRSQKAVTEAFRFAKLIPTPTLSTFNMLMSVCATSQDSAGAFQVLQLVREAGLKA 525
Query: 126 DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY 185
DCKLYTTLI+TCAKSGKVDAMFEVFHEMVNA +EPNVHTYGALIDGC +AGQVAKAFGAY
Sbjct: 526 DCKLYTTLISTCAKSGKVDAMFEVFHEMVNAEVEPNVHTYGALIDGCGRAGQVAKAFGAY 585
Query: 186 GIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 245
GIMRSK V+PDRVVFNALITACGQSGAVDRAFDVLAEM AE P+DPDHIT+GAL+KAC
Sbjct: 586 GIMRSKKVEPDRVVFNALITACGQSGAVDRAFDVLAEMRAETQPIDPDHITVGALIKACT 645
Query: 246 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 305
NAGQVDRAREVYKMI +YNIKGTPEVYTIA++ SQ GDWEFA SVY DMT+KGV+PDE+
Sbjct: 646 NAGQVDRAREVYKMIDQYNIKGTPEVYTIAVSSHSQIGDWEFAYSVYTDMTRKGVVPDEM 705
Query: 306 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 365
FLSALID AGHAGK++AAFE++QEA+ QGI +GI+SYSSLMGACSNAKNWQKALELY +
Sbjct: 706 FLSALIDVAGHAGKLDAAFEVIQEARIQGIPLGIVSYSSLMGACSNAKNWQKALELYVDI 765
Query: 366 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 425
KS+KL PTVSTMNALITALC+G+QL K MEVLSDMK GLCPNTITYSILLVA E+KDD+
Sbjct: 766 KSMKLNPTVSTMNALITALCEGEQLEKAMEVLSDMKRAGLCPNTITYSILLVASEKKDDI 825
Query: 426 EVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKW 482
+VGLM+LSQA++D V PNLVM +C++GMC RR+EKA L E VLSFNSGRPQI+NKW
Sbjct: 826 DVGLMILSQARKDSVAPNLVMCRCLVGMCLRRFEKACALGEPVLSFNSGRPQIDNKW 882
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297744686|emb|CBI37948.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 800 bits (2065), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 370/477 (77%), Positives = 424/477 (88%)
Query: 6 KNMLQFPYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHA 65
+N+ QFP NG + SE+ +YNRL+ +GR+S+CI LLEDME+ GLLDMDKVYHA
Sbjct: 841 RNLSQFPLSNGMTVKEKYHDSEKFSAYNRLLSEGRLSDCIQLLEDMEKMGLLDMDKVYHA 900
Query: 66 RFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKA 125
+FF +C+SQKA+ EAFRF KL+P PTLSTFNMLMSVCA+S+DS GAFQVL+LV+EAGLKA
Sbjct: 901 KFFKICRSQKAVTEAFRFAKLIPTPTLSTFNMLMSVCATSQDSAGAFQVLQLVREAGLKA 960
Query: 126 DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY 185
DCKLYTTLI+TCAKSGKVDAMFEVFHEMVNA +EPNVHTYGALIDGC +AGQVAKAFGAY
Sbjct: 961 DCKLYTTLISTCAKSGKVDAMFEVFHEMVNAEVEPNVHTYGALIDGCGRAGQVAKAFGAY 1020
Query: 186 GIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 245
GIMRSK V+PDRVVFNALITACGQSGAVDRAFDVLAEM AE P+DPDHIT+GAL+KAC
Sbjct: 1021 GIMRSKKVEPDRVVFNALITACGQSGAVDRAFDVLAEMRAETQPIDPDHITVGALIKACT 1080
Query: 246 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 305
NAGQVDRAREVYKMI +YNIKGTPEVYTIA++ SQ GDWEFA SVY DMT+KGV+PDE+
Sbjct: 1081 NAGQVDRAREVYKMIDQYNIKGTPEVYTIAVSSHSQIGDWEFAYSVYTDMTRKGVVPDEM 1140
Query: 306 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 365
FLSALID AGHAGK++AAFE++QEA+ QGI +GI+SYSSLMGACSNAKNWQKALELY +
Sbjct: 1141 FLSALIDVAGHAGKLDAAFEVIQEARIQGIPLGIVSYSSLMGACSNAKNWQKALELYVDI 1200
Query: 366 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 425
KS+KL PTVSTMNALITALC+G+QL K MEVLSDMK GLCPNTITYSILLVA E+KDD+
Sbjct: 1201 KSMKLNPTVSTMNALITALCEGEQLEKAMEVLSDMKRAGLCPNTITYSILLVASEKKDDI 1260
Query: 426 EVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKW 482
+VGLM+LSQA++D V PNLVM +C++GMC RR+EKA L E VLSFNSGRPQI+NKW
Sbjct: 1261 DVGLMILSQARKDSVAPNLVMCRCLVGMCLRRFEKACALGEPVLSFNSGRPQIDNKW 1317
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449458656|ref|XP_004147063.1| PREDICTED: pentatricopeptide repeat-containing protein At4g34830, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 754 bits (1947), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/478 (71%), Positives = 414/478 (86%)
Query: 5 GKNMLQFPYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYH 64
GK + P+PNGKH +Y + +Q SYN+ ++ GR+ +CI +L+DME++G+LDM+K+YH
Sbjct: 398 GKVVNGLPHPNGKHVHYKNLDVDQYKSYNQCLKGGRLHDCIRILQDMEKEGILDMNKIYH 457
Query: 65 ARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLK 124
+FFN+CKS+KA++EAF++ L+ NPTLSTFNMLMSVCASS+DSE AFQV+RLVQEAG+K
Sbjct: 458 GKFFNICKSKKAVQEAFQYTALIQNPTLSTFNMLMSVCASSQDSERAFQVVRLVQEAGMK 517
Query: 125 ADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGA 184
ADCKLYTTLI+TC KSGKVDAMFEVFH MVNAG+EPNVHTYGALIDGCA+A QVAKAFG
Sbjct: 518 ADCKLYTTLISTCGKSGKVDAMFEVFHRMVNAGVEPNVHTYGALIDGCARAAQVAKAFGV 577
Query: 185 YGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 244
YGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEM AE+HP++PDHITIGALMKAC
Sbjct: 578 YGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMGAELHPIEPDHITIGALMKAC 637
Query: 245 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 304
ANAGQVDRAREVYKMIH Y IKGTPEVYTIA+NCCSQ+ DW+FA ++Y DMT+KGV PDE
Sbjct: 638 ANAGQVDRAREVYKMIHDYKIKGTPEVYTIAVNCCSQSCDWDFASNIYQDMTRKGVQPDE 697
Query: 305 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 364
+FLSALID AGHAGK++AAFE+L EAK GI VGI+SYSSLMGACSNAKNWQKAL LYE
Sbjct: 698 IFLSALIDVAGHAGKLDAAFEVLGEAKTLGIRVGIVSYSSLMGACSNAKNWQKALALYED 757
Query: 365 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 424
+KS+KL+ TVST+NALITAL DG+QL M++L++MK LGL PN ITYSIL A +R +D
Sbjct: 758 LKSMKLRLTVSTVNALITALSDGEQLQMAMDILTEMKELGLSPNNITYSILTAASDRNND 817
Query: 425 VEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKW 482
+E+ LMLLSQAKEDG++P L M++CIIGMC RR +L+ ++S +S PQ+++KW
Sbjct: 818 LEIALMLLSQAKEDGIVPTLTMYRCIIGMCLRRIADPSSLDRPLMSLDSTLPQVDSKW 875
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224080562|ref|XP_002306163.1| predicted protein [Populus trichocarpa] gi|222849127|gb|EEE86674.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 746 bits (1926), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/432 (80%), Positives = 390/432 (90%)
Query: 51 MERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEG 110
MER+GLLDM+KVYH +FF +C+SQKA+KEAFRF KLV NPTLSTFNMLMSVCA+S++S G
Sbjct: 1 MERRGLLDMNKVYHVKFFKLCRSQKAVKEAFRFCKLVQNPTLSTFNMLMSVCATSQNSAG 60
Query: 111 AFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALID 170
AF+VL+L + GLKADCKLYTTLI+TCAKSGKVDAMFEVFHEMVNAG+EPNVHTYGALID
Sbjct: 61 AFEVLQLAKAVGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEPNVHTYGALID 120
Query: 171 GCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPV 230
GCA+AGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEM E P+
Sbjct: 121 GCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMTGEAQPI 180
Query: 231 DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACS 290
DPDHIT+GAL+KAC NAGQVDRA+EVY M+HKYNIKGTPEVYTIAIN CSQ GDWEFAC
Sbjct: 181 DPDHITVGALIKACTNAGQVDRAQEVYNMVHKYNIKGTPEVYTIAINSCSQIGDWEFACK 240
Query: 291 VYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 350
V+DDMT+KGV+PDE+FLSALID AGHAGK++AAFEI+QEAK +G +GII YSSLMGAC
Sbjct: 241 VFDDMTRKGVVPDEMFLSALIDVAGHAGKMDAAFEIIQEAKAKGAQLGIIPYSSLMGACC 300
Query: 351 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI 410
NAKNWQK LELYE +KS+K+KPTV+TMNALITALCDGDQLPK +EVLS+MK+ GL PNTI
Sbjct: 301 NAKNWQKGLELYEDIKSMKIKPTVATMNALITALCDGDQLPKALEVLSEMKAWGLRPNTI 360
Query: 411 TYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLS 470
TYSIL VA ERKDD+E GLMLLSQAK+D V P L+M KCII MC R++E A TL E VLS
Sbjct: 361 TYSILSVASERKDDLEAGLMLLSQAKKDCVAPTLIMSKCIISMCLRKFESACTLGEAVLS 420
Query: 471 FNSGRPQIENKW 482
FNSGR QIENKW
Sbjct: 421 FNSGRAQIENKW 432
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|110740372|dbj|BAF02081.1| hypothetical protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 739 bits (1907), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/477 (71%), Positives = 406/477 (85%)
Query: 6 KNMLQFPYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHA 65
++M QFP N + N E +YNRL+R GRI +CI LLED++++ LLDMDK+YHA
Sbjct: 381 ESMPQFPARNFELHNSNGRSPETSDAYNRLLRDGRIKDCISLLEDLDQRDLLDMDKIYHA 440
Query: 66 RFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKA 125
FF CK Q+A+KEAFRF KL+ NPT+STFNMLMSVCASS+D EGA VLRLVQE+G+ A
Sbjct: 441 SFFKACKKQRAVKEAFRFTKLILNPTMSTFNMLMSVCASSQDIEGARGVLRLVQESGMTA 500
Query: 126 DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY 185
DCKLYTTLI++CAKSGKVDAMFEVFH+M N+G+E N+HT+GALIDGCA+AGQVAKAFGAY
Sbjct: 501 DCKLYTTLISSCAKSGKVDAMFEVFHQMSNSGVEANLHTFGALIDGCARAGQVAKAFGAY 560
Query: 186 GIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 245
GI+RSKNVKPDRVVFNALI+ACGQSGAVDRAFDVLAEM AE HP+DPDHI+IGALMKAC
Sbjct: 561 GILRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHISIGALMKACC 620
Query: 246 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 305
NAGQV+RA+EVY+MIHKY I+GTPEVYTIA+N CS++GDW+FACS+Y DM +K V PDEV
Sbjct: 621 NAGQVERAKEVYQMIHKYGIRGTPEVYTIAVNSCSKSGDWDFACSIYKDMKEKDVTPDEV 680
Query: 306 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 365
F SALID AGHA ++ AF ILQ+AK+QGI +G ISYSSLMGAC NAK+W+KALELYE +
Sbjct: 681 FFSALIDVAGHAKMLDEAFGILQDAKSQGIRLGTISYSSLMGACCNAKDWKKALELYEKI 740
Query: 366 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 425
KSIKL+PT+STMNALITALC+G+QLPK ME L ++K+LGL PNTITYS+L++A ERKDD
Sbjct: 741 KSIKLRPTISTMNALITALCEGNQLPKAMEYLDEIKTLGLKPNTITYSMLMLASERKDDF 800
Query: 426 EVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKW 482
EV LLSQAK DGV PNL+M +CI +C RR+EKA E V+SF SGRPQIENKW
Sbjct: 801 EVSFKLLSQAKGDGVSPNLIMCRCITSLCKRRFEKACAGGEPVVSFKSGRPQIENKW 857
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|110741791|dbj|BAE98839.1| hypothetical protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 738 bits (1906), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/477 (71%), Positives = 406/477 (85%)
Query: 6 KNMLQFPYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHA 65
++M QFP N + N E +YNRL+R GRI +CI LLED++++ LLDMDK+YHA
Sbjct: 381 ESMPQFPARNFELHNSNGRSPETSDAYNRLLRDGRIKDCISLLEDLDQRDLLDMDKIYHA 440
Query: 66 RFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKA 125
FF CK Q+A+KEAFRF KL+ NPT+STFNMLMSVCASS+D EGA VLRLVQE+G+ A
Sbjct: 441 SFFKACKKQRAVKEAFRFTKLILNPTMSTFNMLMSVCASSQDIEGARGVLRLVQESGMTA 500
Query: 126 DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY 185
DCKLYTTLI++CAKSGKVDAMFEVFH+M N+G+E N+HT+GALIDGCA+AGQVAKAFGAY
Sbjct: 501 DCKLYTTLISSCAKSGKVDAMFEVFHQMSNSGVEANLHTFGALIDGCARAGQVAKAFGAY 560
Query: 186 GIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 245
GI+RSKNVKPDRVVFNALI+ACGQSGAVDRAFDVLAEM AE HP+DPDHI+IGALMKAC
Sbjct: 561 GILRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHISIGALMKACC 620
Query: 246 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 305
NAGQV+RA+EVY+MIHKY I+GTPEVYTIA+N CS++GDW+FACS+Y DM +K V PDEV
Sbjct: 621 NAGQVERAKEVYQMIHKYGIRGTPEVYTIAVNSCSKSGDWDFACSIYKDMKEKDVTPDEV 680
Query: 306 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 365
F SALID AGHA ++ AF ILQ+AK+QGI +G ISYSSLMGAC NAK+W+KALELYE +
Sbjct: 681 FFSALIDVAGHAKMLDEAFGILQDAKSQGIRLGTISYSSLMGACCNAKDWKKALELYEKI 740
Query: 366 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 425
KSIKL+PT+STMNALITALC+G+QLPK ME L ++K+LGL PNTITYS+L++A ERKDD
Sbjct: 741 KSIKLRPTISTMNALITALCEGNQLPKAMEYLDEIKTLGLKPNTITYSMLMLASERKDDF 800
Query: 426 EVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKW 482
EV LLSQAK DGV PNL+M +CI +C RR+EKA E V+SF SGRPQIENKW
Sbjct: 801 EVSFKLLSQAKGDGVSPNLIMCRCITSLCKRRFEKACAGGEPVVSFKSGRPQIENKW 857
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|145353124|ref|NP_195209.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|223635623|sp|Q0WLC6.2|PP349_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g34830, chloroplastic; Flags: Precursor gi|332661026|gb|AEE86426.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 738 bits (1906), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/477 (71%), Positives = 406/477 (85%)
Query: 6 KNMLQFPYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHA 65
++M QFP N + N E +YNRL+R GRI +CI LLED++++ LLDMDK+YHA
Sbjct: 381 ESMPQFPARNFELHNSNGRSPETSDAYNRLLRDGRIKDCISLLEDLDQRDLLDMDKIYHA 440
Query: 66 RFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKA 125
FF CK Q+A+KEAFRF KL+ NPT+STFNMLMSVCASS+D EGA VLRLVQE+G+ A
Sbjct: 441 SFFKACKKQRAVKEAFRFTKLILNPTMSTFNMLMSVCASSQDIEGARGVLRLVQESGMTA 500
Query: 126 DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY 185
DCKLYTTLI++CAKSGKVDAMFEVFH+M N+G+E N+HT+GALIDGCA+AGQVAKAFGAY
Sbjct: 501 DCKLYTTLISSCAKSGKVDAMFEVFHQMSNSGVEANLHTFGALIDGCARAGQVAKAFGAY 560
Query: 186 GIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 245
GI+RSKNVKPDRVVFNALI+ACGQSGAVDRAFDVLAEM AE HP+DPDHI+IGALMKAC
Sbjct: 561 GILRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHISIGALMKACC 620
Query: 246 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 305
NAGQV+RA+EVY+MIHKY I+GTPEVYTIA+N CS++GDW+FACS+Y DM +K V PDEV
Sbjct: 621 NAGQVERAKEVYQMIHKYGIRGTPEVYTIAVNSCSKSGDWDFACSIYKDMKEKDVTPDEV 680
Query: 306 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 365
F SALID AGHA ++ AF ILQ+AK+QGI +G ISYSSLMGAC NAK+W+KALELYE +
Sbjct: 681 FFSALIDVAGHAKMLDEAFGILQDAKSQGIRLGTISYSSLMGACCNAKDWKKALELYEKI 740
Query: 366 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 425
KSIKL+PT+STMNALITALC+G+QLPK ME L ++K+LGL PNTITYS+L++A ERKDD
Sbjct: 741 KSIKLRPTISTMNALITALCEGNQLPKAMEYLDEIKTLGLKPNTITYSMLMLASERKDDF 800
Query: 426 EVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKW 482
EV LLSQAK DGV PNL+M +CI +C RR+EKA E V+SF SGRPQIENKW
Sbjct: 801 EVSFKLLSQAKGDGVSPNLIMCRCITSLCKRRFEKACAGGEPVVSFKSGRPQIENKW 857
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297798436|ref|XP_002867102.1| binding protein [Arabidopsis lyrata subsp. lyrata] gi|297312938|gb|EFH43361.1| binding protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 734 bits (1895), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 340/477 (71%), Positives = 404/477 (84%)
Query: 6 KNMLQFPYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHA 65
++M QF N + N E +YNRL+R GRI +CI LLED++++ LLDMDK+YHA
Sbjct: 386 ESMPQFHARNFELHNSNGRSPESNDAYNRLLRDGRIKDCISLLEDLDQRDLLDMDKIYHA 445
Query: 66 RFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKA 125
FF CK Q+A+KEAFRF KL+ NPT+STFNMLMSVCASS+D EGA VLRLVQE+G+ A
Sbjct: 446 SFFKTCKKQRAVKEAFRFTKLILNPTMSTFNMLMSVCASSQDIEGARGVLRLVQESGMTA 505
Query: 126 DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY 185
DCKLYTTLI++CAKSGKVDAMFEVFH+M N+G+E N+HT+GALIDGCA+AGQVAKAFGAY
Sbjct: 506 DCKLYTTLISSCAKSGKVDAMFEVFHQMSNSGVEANLHTFGALIDGCARAGQVAKAFGAY 565
Query: 186 GIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 245
GI+RSKNVKPDRVVFNALI+ACGQSGAVDRAFDVLAEM AE HP+DPDHITIGALMKAC
Sbjct: 566 GILRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITIGALMKACC 625
Query: 246 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 305
NAGQV+RA+EVY+MIHKY I+GTPEVYTIA+N CS++GDW+FACS+Y DM +K V PDEV
Sbjct: 626 NAGQVERAKEVYQMIHKYGIRGTPEVYTIAVNSCSKSGDWDFACSIYKDMKEKDVTPDEV 685
Query: 306 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 365
F SALID AGHA ++ AF ILQ+AK+QGI +G +SYSSLMGAC NAK+W+KALELYE +
Sbjct: 686 FFSALIDVAGHAKMLDEAFGILQDAKSQGIRLGTVSYSSLMGACCNAKDWKKALELYEKI 745
Query: 366 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 425
K IKL+PT+STMNALITALC+G+QLPK ME L ++K+LGL PNTITYS+L++A ERKDD
Sbjct: 746 KLIKLRPTISTMNALITALCEGNQLPKAMEYLDEIKTLGLKPNTITYSMLMLASERKDDF 805
Query: 426 EVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKW 482
EV LLSQAKEDG+ PN +M +CI +C RR+EKA E V+SF SGRPQIENKW
Sbjct: 806 EVSFKLLSQAKEDGISPNFIMCRCITSLCKRRFEKACAGGEPVVSFKSGRPQIENKW 862
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356529805|ref|XP_003533478.1| PREDICTED: pentatricopeptide repeat-containing protein At4g34830, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 734 bits (1894), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 335/443 (75%), Positives = 397/443 (89%)
Query: 40 RISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLM 99
R+ EC++LL+DME KGLLDM KVYHA+FFN+CK +KA+KEAF F +L+PNP LSTFNMLM
Sbjct: 408 RLHECVELLKDMETKGLLDMTKVYHAKFFNICKKRKAVKEAFDFIRLIPNPMLSTFNMLM 467
Query: 100 SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIE 159
SVCASS+DSEGAFQVL+L+++A L+ DCKLYTTLI TCAKSGKVD MFEVFH+MVN+G+E
Sbjct: 468 SVCASSQDSEGAFQVLQLLKDARLEPDCKLYTTLILTCAKSGKVDLMFEVFHKMVNSGVE 527
Query: 160 PNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDV 219
PNVHTYGALIDGCA+AGQVAKAFGAYGIMRSKNVKPDRVVFNALI AC QSGA+DRAFDV
Sbjct: 528 PNVHTYGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALIAACAQSGALDRAFDV 587
Query: 220 LAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCC 279
LAEM AE P+DPDH+TIGAL+KAC AGQV+RA+EVYKM+ KYNIKG PEVYTIAIN C
Sbjct: 588 LAEMTAETQPIDPDHVTIGALLKACTKAGQVERAKEVYKMVQKYNIKGCPEVYTIAINSC 647
Query: 280 SQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGI 339
SQTGDWEFA +VY+DMT+KG++PDE+FLSALID AGHA K++AAF++LQEA+ GI +GI
Sbjct: 648 SQTGDWEFAHTVYNDMTQKGILPDEIFLSALIDVAGHAKKLDAAFDVLQEARKGGILIGI 707
Query: 340 ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSD 399
+SYSSLMGACSNA+NWQKALELYE++KS+KL TVST+NAL+TALCDGDQ K +EVL +
Sbjct: 708 MSYSSLMGACSNARNWQKALELYEYLKSLKLTITVSTVNALLTALCDGDQFQKALEVLFE 767
Query: 400 MKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYE 459
MK LGL PN+IT+SIL+VA E+KDD+E MLLS AK+DGV+PNL+M +CIIGMC RR+E
Sbjct: 768 MKGLGLRPNSITFSILIVASEKKDDMEAAQMLLSLAKKDGVVPNLIMCRCIIGMCQRRFE 827
Query: 460 KARTLNEHVLSFNSGRPQIENKW 482
KA + E VLSF+SGRPQ++NKW
Sbjct: 828 KACFVGEPVLSFDSGRPQVDNKW 850
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 488 | ||||||
| TAIR|locus:2116915 | 1089 | MRL1 "MATURATION OF RBCL 1" [A | 0.977 | 0.438 | 0.719 | 4.9e-188 | |
| TAIR|locus:2084978 | 602 | AT3G04760 [Arabidopsis thalian | 0.905 | 0.734 | 0.262 | 8.2e-38 | |
| TAIR|locus:2155730 | 915 | AT5G65560 "AT5G65560" [Arabido | 0.821 | 0.438 | 0.294 | 9.8e-37 | |
| TAIR|locus:2203916 | 634 | AT1G62590 [Arabidopsis thalian | 0.854 | 0.657 | 0.252 | 8.4e-36 | |
| TAIR|locus:2163041 | 527 | AT5G41170 [Arabidopsis thalian | 0.834 | 0.772 | 0.278 | 9.2e-36 | |
| TAIR|locus:2026192 | 630 | RPF2 "rna processing factor 2" | 0.834 | 0.646 | 0.253 | 1.4e-35 | |
| TAIR|locus:2174165 | 504 | AT5G16640 [Arabidopsis thalian | 0.75 | 0.726 | 0.280 | 4e-35 | |
| TAIR|locus:2164910 | 747 | EMB2745 "EMBRYO DEFECTIVE 2745 | 0.875 | 0.571 | 0.264 | 6.2e-35 | |
| TAIR|locus:2034760 | 637 | AT1G12300 [Arabidopsis thalian | 0.831 | 0.637 | 0.251 | 1.1e-34 | |
| TAIR|locus:2077061 | 619 | AT3G22470 "AT3G22470" [Arabido | 0.862 | 0.680 | 0.273 | 3.5e-34 |
| TAIR|locus:2116915 MRL1 "MATURATION OF RBCL 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1823 (646.8 bits), Expect = 4.9e-188, P = 4.9e-188
Identities = 343/477 (71%), Positives = 406/477 (85%)
Query: 6 KNMLQFPYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHA 65
++M QFP N + N E +YNRL+R GRI +CI LLED++++ LLDMDK+YHA
Sbjct: 381 ESMPQFPARNFELHNSNGRSPETSDAYNRLLRDGRIKDCISLLEDLDQRDLLDMDKIYHA 440
Query: 66 RFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKA 125
FF CK Q+A+KEAFRF KL+ NPT+STFNMLMSVCASS+D EGA VLRLVQE+G+ A
Sbjct: 441 SFFKACKKQRAVKEAFRFTKLILNPTMSTFNMLMSVCASSQDIEGARGVLRLVQESGMTA 500
Query: 126 DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY 185
DCKLYTTLI++CAKSGKVDAMFEVFH+M N+G+E N+HT+GALIDGCA+AGQVAKAFGAY
Sbjct: 501 DCKLYTTLISSCAKSGKVDAMFEVFHQMSNSGVEANLHTFGALIDGCARAGQVAKAFGAY 560
Query: 186 GIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 245
GI+RSKNVKPDRVVFNALI+ACGQSGAVDRAFDVLAEM AE HP+DPDHI+IGALMKAC
Sbjct: 561 GILRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHISIGALMKACC 620
Query: 246 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 305
NAGQV+RA+EVY+MIHKY I+GTPEVYTIA+N CS++GDW+FACS+Y DM +K V PDEV
Sbjct: 621 NAGQVERAKEVYQMIHKYGIRGTPEVYTIAVNSCSKSGDWDFACSIYKDMKEKDVTPDEV 680
Query: 306 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 365
F SALID AGHA ++ AF ILQ+AK+QGI +G ISYSSLMGAC NAK+W+KALELYE +
Sbjct: 681 FFSALIDVAGHAKMLDEAFGILQDAKSQGIRLGTISYSSLMGACCNAKDWKKALELYEKI 740
Query: 366 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 425
KSIKL+PT+STMNALITALC+G+QLPK ME L ++K+LGL PNTITYS+L++A ERKDD
Sbjct: 741 KSIKLRPTISTMNALITALCEGNQLPKAMEYLDEIKTLGLKPNTITYSMLMLASERKDDF 800
Query: 426 EVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKW 482
EV LLSQAK DGV PNL+M +CI +C RR+EKA E V+SF SGRPQIENKW
Sbjct: 801 EVSFKLLSQAKGDGVSPNLIMCRCITSLCKRRFEKACAGGEPVVSFKSGRPQIENKW 857
|
|
| TAIR|locus:2084978 AT3G04760 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 407 (148.3 bits), Expect = 8.2e-38, P = 8.2e-38
Identities = 121/461 (26%), Positives = 220/461 (47%)
Query: 26 SEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHAR----FFNVCKSQKAIKEAF 81
++ L ++R R G E + LLE M RKG + D + + FF + KA++
Sbjct: 90 TQMLKIFHRSCRSGNYIESLHLLETMVRKGY-NPDVILCTKLIKGFFTLRNIPKAVR-VM 147
Query: 82 RFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
+ P + +N L++ + A +VL ++ D Y +I + G
Sbjct: 148 EILEKFGQPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRG 207
Query: 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201
K+D +V +++++ +P V TY LI+ G V +A M S+ +KPD +N
Sbjct: 208 KLDLALKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYN 267
Query: 202 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH 261
+I + G VDRAF+++ N E+ +PD I+ L++A N G+ + ++ M
Sbjct: 268 TIIRGMCKEGMVDRAFEMVR--NLELKGCEPDVISYNILLRALLNQGKWEEGEKL--MTK 323
Query: 262 KYNIKGTPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 319
++ K P V Y+I I + G E A ++ M +KG+ PD LI G+
Sbjct: 324 MFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGR 383
Query: 320 VEAAFEILQEAKNQGISVGIISYSSLMGA-CSNAKNWQKALELYEHMKSIKLKPTVSTMN 378
++ A E L+ + G I++Y++++ C N K Q ALE++ + + P S+ N
Sbjct: 384 LDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQ-ALEIFGKLGEVGCSPNSSSYN 442
Query: 379 ALITAL-CDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437
+ +AL GD++ + + ++ +M S G+ P+ ITY+ ++ R+ V+ LL +
Sbjct: 443 TMFSALWSSGDKI-RALHMILEMMSNGIDPDEITYNSMISCLCREGMVDEAFELLVDMRS 501
Query: 438 DGVIPNLVMFKCII-GMC-SRRYEKARTLNEHVLSFNSGRP 476
P++V + ++ G C + R E A + E ++ N RP
Sbjct: 502 CEFHPSVVTYNIVLLGFCKAHRIEDAINVLESMVG-NGCRP 541
|
|
| TAIR|locus:2155730 AT5G65560 "AT5G65560" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 405 (147.6 bits), Expect = 9.8e-37, P = 9.8e-37
Identities = 124/421 (29%), Positives = 212/421 (50%)
Query: 41 ISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF-KLVPN---PTLSTFN 96
+ + +M KG + Y +C +++ I EA F K+ + PT+ T+
Sbjct: 269 LDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARR-IDEAMDLFVKMKDDECFPTVRTYT 327
Query: 97 MLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN 155
+L+ S+C S + SE A +++ ++E G+K + YT LI + K + E+ +M+
Sbjct: 328 VLIKSLCGSERKSE-ALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLE 386
Query: 156 AGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDR 215
G+ PNV TY ALI+G K G + A +M S+ + P+ +N LI +S V +
Sbjct: 387 KGLMPNVITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCKSN-VHK 445
Query: 216 AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG-TPE--VY 272
A VL +M E V PD +T +L+ +G D A Y+++ N +G P+ Y
Sbjct: 446 AMGVLNKM-LE-RKVLPDVVTYNSLIDGQCRSGNFDSA---YRLLSLMNDRGLVPDQWTY 500
Query: 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332
T I+ ++ E AC ++D + +KGV P+ V +ALID AGKV+ A +L++ +
Sbjct: 501 TSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLS 560
Query: 333 QGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC-DGDQL 390
+ +++++L+ G C++ K ++A L E M I L+PTVST LI L DGD
Sbjct: 561 KNCLPNSLTFNALIHGLCADGK-LKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGD-F 618
Query: 391 PKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCI 450
M S G P+ TY+ + R+ + ++++ +E+GV P+L + +
Sbjct: 619 DHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSL 678
Query: 451 I 451
I
Sbjct: 679 I 679
|
|
| TAIR|locus:2203916 AT1G62590 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 391 (142.7 bits), Expect = 8.4e-36, P = 8.4e-36
Identities = 108/428 (25%), Positives = 206/428 (48%)
Query: 40 RISECIDLLEDMERKGL----LDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTF 95
RIS+ + L++ M G + + H F + K+ +A+ R + P L T+
Sbjct: 170 RISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHN-KASEAVALVDRMVQRGCQPNLVTY 228
Query: 96 NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN 155
++++ D++ A +L ++ A ++AD ++ T+I + K VD +F EM
Sbjct: 229 GVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMET 288
Query: 156 AGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDR 215
GI PNV TY +LI G+ + A M K + P+ V FNALI A + G
Sbjct: 289 KGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVE 348
Query: 216 AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK-MIHKYNIKGTPEVYTI 274
A + +M +DPD T +L+ ++D+A+++++ M+ K T+
Sbjct: 349 AEKLYDDMIKR--SIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTL 406
Query: 275 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334
C ++ E ++ +M+ +G++ D V + LI H G + A ++ ++ + G
Sbjct: 407 IKGFC-KSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDG 465
Query: 335 ISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 393
+ I++YS L+ G C+N K +KALE++++M+ ++K + +I +C ++
Sbjct: 466 VPPDIMTYSILLDGLCNNGK-LEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDG 524
Query: 394 MEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGM 453
++ + G+ PN +TY+ ++ K ++ LL + KEDG +PN + +I
Sbjct: 525 WDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRA 584
Query: 454 CSRRYEKA 461
R +KA
Sbjct: 585 HLRDGDKA 592
|
|
| TAIR|locus:2163041 AT5G41170 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 386 (140.9 bits), Expect = 9.2e-36, P = 9.2e-36
Identities = 121/435 (27%), Positives = 208/435 (47%)
Query: 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVC---KSQKAIKEAF--RFFKLV 87
N + + + I+L + ++ G+ +Y C SQ + +F + KL
Sbjct: 80 NVIAKMKKFDVVINLCDHLQIMGV--SHDLYTCNLLMNCFCQSSQPYLASSFLGKMMKLG 137
Query: 88 PNPTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM 146
P + TF L++ C ++ E V ++V E G+K D +YTT+I + K+G V+
Sbjct: 138 FEPDIVTFTSLINGFCLGNRMEEAMSMVNQMV-EMGIKPDVVMYTTIIDSLCKNGHVNYA 196
Query: 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA 206
+F +M N GI P+V Y +L++G +G+ A M + +KPD + FNALI A
Sbjct: 197 LSLFDQMENYGIRPDVVMYTSLVNGLCNSGRWRDADSLLRGMTKRKIKPDVITFNALIDA 256
Query: 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266
+ G A ++ EM + P+ T +L+ G VD AR+++ ++ K
Sbjct: 257 FVKEGKFLDAEELYNEMIRM--SIAPNIFTYTSLINGFCMEGCVDEARQMFYLMET---K 311
Query: 267 GT-PEV--YTIAIN--C-CSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV 320
G P+V YT IN C C + D A ++ +M++KG+ + + + LI G GK
Sbjct: 312 GCFPDVVAYTSLINGFCKCKKVDD---AMKIFYEMSQKGLTGNTITYTTLIQGFGQVGKP 368
Query: 321 EAAFEILQEAKNQGISVGIISYSSLMGA-CSNAKNWQKALELYEHMKSIKLK---PTVST 376
A E+ ++G+ I +Y+ L+ C N K +KAL ++E M+ ++ P + T
Sbjct: 369 NVAQEVFSHMVSRGVPPNIRTYNVLLHCLCYNGKV-KKALMIFEDMQKREMDGVAPNIWT 427
Query: 377 MNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAK 436
N L+ LC +L K + V DM+ + ITY+I++ + V+ + L
Sbjct: 428 YNVLLHGLCYNGKLEKALMVFEDMRKREMDIGIITYTIIIQGMCKAGKVKNAVNLFCSLP 487
Query: 437 EDGVIPNLVMFKCII 451
GV PN+V + +I
Sbjct: 488 SKGVKPNVVTYTTMI 502
|
|
| TAIR|locus:2026192 RPF2 "rna processing factor 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 389 (142.0 bits), Expect = 1.4e-35, P = 1.4e-35
Identities = 106/418 (25%), Positives = 201/418 (48%)
Query: 40 RISECIDLLEDMERKGL----LDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTF 95
RISE + L++ M G + + + H F + K+ +A+ R P L T+
Sbjct: 166 RISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHN-KASEAMALIDRMVAKGCQPDLVTY 224
Query: 96 NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN 155
++++ D++ AF +L +++ L+ +Y T+I K +D +F EM
Sbjct: 225 GVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMET 284
Query: 156 AGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDR 215
GI PNV TY +LI G+ + A M + + PD F+ALI A + G +
Sbjct: 285 KGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVE 344
Query: 216 AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK-MIHKYNIKGTPEVYTI 274
A + EM +DP +T +L+ ++D A+++++ M+ K+ T+
Sbjct: 345 AEKLYDEMVKR--SIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTL 402
Query: 275 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334
C E V+ +M+++G++ + V + LI AG + A EI +E + G
Sbjct: 403 IKGFCKYKRVEE-GMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDG 461
Query: 335 ISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 393
+ I++Y++L+ G C N K +KA+ ++E+++ K++PT+ T N +I +C ++
Sbjct: 462 VPPNIMTYNTLLDGLCKNGK-LEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDG 520
Query: 394 MEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451
++ ++ G+ P+ + Y+ ++ RK E L + KEDG +PN + +I
Sbjct: 521 WDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLI 578
|
|
| TAIR|locus:2174165 AT5G16640 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 380 (138.8 bits), Expect = 4.0e-35, P = 4.0e-35
Identities = 107/381 (28%), Positives = 185/381 (48%)
Query: 71 CK-SQKAIKEAF--RFFKLVPNPTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKAD 126
C+ SQ ++ +F + KL P++ TF L++ C + + + ++V G K +
Sbjct: 127 CRCSQLSLALSFLGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDALYMFDQMVG-MGYKPN 185
Query: 127 CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYG 186
+Y T+I KS +VD ++ + M GI P+V TY +LI G +G+ + A
Sbjct: 186 VVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDATRMVS 245
Query: 187 IMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 246
M + + PD FNALI AC + G V A + EM +DPD +T L+
Sbjct: 246 CMTKREIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRR--SLDPDIVTYSLLIYGLCM 303
Query: 247 AGQVDRAREVYKMIHKYNIKGT-PEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 303
++D A E++ + KG P+V Y+I IN ++ E ++ +M+++GV+ +
Sbjct: 304 YSRLDEAEEMFGFMVS---KGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRN 360
Query: 304 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELY 362
V + LI AGK+ A EI + G+ II+Y+ L+ G C N K +KAL +
Sbjct: 361 TVTYTILIQGYCRAGKLNVAEEIFRRMVFCGVHPNIITYNVLLHGLCDNGKI-EKALVIL 419
Query: 363 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 422
M+ + + T N +I +C ++ ++ + GL P+ TY+ +++ +K
Sbjct: 420 ADMQKNGMDADIVTYNIIIRGMCKAGEVADAWDIYCSLNCQGLMPDIWTYTTMMLGLYKK 479
Query: 423 DDVEVGLMLLSQAKEDGVIPN 443
L + KEDG++PN
Sbjct: 480 GLRREADALFRKMKEDGILPN 500
|
|
| TAIR|locus:2164910 EMB2745 "EMBRYO DEFECTIVE 2745" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 386 (140.9 bits), Expect = 6.2e-35, P = 6.2e-35
Identities = 117/443 (26%), Positives = 209/443 (47%)
Query: 31 SYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV--- 87
SY+RL I + + ++ + G + Y+A +S++ I A FK +
Sbjct: 143 SYSRL---SLIDKALSIVHLAQAHGFMPGVLSYNAVLDATIRSKRNISFAENVFKEMLES 199
Query: 88 -PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM 146
+P + T+N+L+ + + + A + ++ G + Y TLI K K+D
Sbjct: 200 QVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDG 259
Query: 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA 206
F++ M G+EPN+ +Y +I+G + G++ + M + D V +N LI
Sbjct: 260 FKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKG 319
Query: 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266
+ G +A + AEM H + P IT +L+ + AG ++RA E + +
Sbjct: 320 YCKEGNFHQALVMHAEMLR--HGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLC 377
Query: 267 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA--GKVEAAF 324
YT ++ SQ G A V +M G P V +ALI+ GH GK+E A
Sbjct: 378 PNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALIN--GHCVTGKMEDAI 435
Query: 325 EILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384
+L++ K +G+S ++SYS+++ + + +AL + M +KP T ++LI
Sbjct: 436 AVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGF 495
Query: 385 CDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL 444
C+ + + ++ +M +GL P+ TY+ L+ A + D+E L L ++ E GV+P++
Sbjct: 496 CEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDV 555
Query: 445 VMFKCII-GMC--SRRYEKARTL 464
V + +I G+ SR E R L
Sbjct: 556 VTYSVLINGLNKQSRTREAKRLL 578
|
|
| TAIR|locus:2034760 AT1G12300 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 381 (139.2 bits), Expect = 1.1e-34, P = 1.1e-34
Identities = 105/417 (25%), Positives = 196/417 (47%)
Query: 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFN-VCKSQKAIKEAFRFFKLVP--- 88
N L +GR+SE ++L++ M G D + N +C S K + K+V
Sbjct: 166 NGLCLEGRVSEALELVDRMVEMGHKP-DLITINTLVNGLCLSGKEAEAMLLIDKMVEYGC 224
Query: 89 NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
P T+ +++V S + A ++LR ++E +K D Y+ +I K G +D F
Sbjct: 225 QPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFN 284
Query: 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208
+F+EM GI N+ TY LI G AG+ M + + P+ V F+ LI +
Sbjct: 285 LFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFV 344
Query: 209 QSGAVDRAFDVLAEMNAEVHP-VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 267
+ G + A ++ EM +H + PD IT +L+ +D+A ++ ++
Sbjct: 345 KEGKLREAEELHKEM---IHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDP 401
Query: 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327
+ I IN + + ++ M+ +GV+ D V + LI GK+ A E+
Sbjct: 402 NIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELF 461
Query: 328 QEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386
QE ++ + I++Y L+ G C N ++ +KALE++E ++ K++ + N +I +C+
Sbjct: 462 QEMVSRKVPPNIVTYKILLDGLCDNGES-EKALEIFEKIEKSKMELDIGIYNIIIHGMCN 520
Query: 387 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443
++ ++ + G+ P TY+I++ +K + +L + +EDG P+
Sbjct: 521 ASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHAPD 577
|
|
| TAIR|locus:2077061 AT3G22470 "AT3G22470" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 376 (137.4 bits), Expect = 3.5e-34, P = 3.5e-34
Identities = 120/439 (27%), Positives = 202/439 (46%)
Query: 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFN-VCKSQKAIKEAFRFFKLVPNPT 91
N L +GR+SE + L++ M G D+V + N +CKS + A F+ +
Sbjct: 183 NGLCLKGRVSEALVLIDRMVEYGF-QPDEVTYGPVLNRLCKSGNSAL-ALDLFRKMEERN 240
Query: 92 LSTFNMLMSVCASSKDSEGAFQ-VLRLVQEA---GLKADCKLYTTLITTCAKSGKVDAMF 147
+ + S+ S +G+F L L E G+KAD Y++LI GK D
Sbjct: 241 IKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGA 300
Query: 148 EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA- 206
++ EM+ I P+V T+ ALID K G++ +A Y M ++ + PD + +N+LI
Sbjct: 301 KMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGF 360
Query: 207 CGQS--GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH-KY 263
C ++ ++ FD++ E PD +T L+ + A +VD +++ I K
Sbjct: 361 CKENCLHEANQMFDLMVSKGCE-----PDIVTYSILINSYCKAKRVDDGMRLFREISSKG 415
Query: 264 NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 323
I T T+ + C Q+G A ++ +M +GV P V L+D G++ A
Sbjct: 416 LIPNTITYNTLVLGFC-QSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKA 474
Query: 324 FEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA 383
EI ++ + +++GI Y+ ++ NA A L+ + +KP V T N +I
Sbjct: 475 LEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGG 534
Query: 384 LCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443
LC L + + MK G P+ TY+IL+ A + + L+ + K G +
Sbjct: 535 LCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSGLISSVELIEEMKVCGFSAD 594
Query: 444 LVMFKCIIGMCS-RRYEKA 461
K +I M S RR +K+
Sbjct: 595 SSTIKMVIDMLSDRRLDKS 613
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q0WLC6 | PP349_ARATH | No assigned EC number | 0.7190 | 0.9774 | 0.4380 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 488 | |||
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 0.0 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 6e-16 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-15 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-13 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 7e-13 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 6e-12 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 3e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 9e-11 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 3e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 9e-10 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-09 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-06 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 7e-06 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 8e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 8e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 2e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 5e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 5e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 7e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 8e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 0.001 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.002 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 935 bits (2419), Expect = 0.0
Identities = 368/459 (80%), Positives = 416/459 (90%)
Query: 24 DVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRF 83
E + +YNRL+R GRI +CIDLLEDME++GLLDMDK+YHA+FF CK Q+A+KEAFRF
Sbjct: 369 KSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRF 428
Query: 84 FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
KL+ NPTLSTFNMLMSVCASS+D +GA +VLRLVQEAGLKADCKLYTTLI+TCAKSGKV
Sbjct: 429 AKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKV 488
Query: 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 203
DAMFEVFHEMVNAG+E NVHT+GALIDGCA+AGQVAKAFGAYGIMRSKNVKPDRVVFNAL
Sbjct: 489 DAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 548
Query: 204 ITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY 263
I+ACGQSGAVDRAFDVLAEM AE HP+DPDHIT+GALMKACANAGQVDRA+EVY+MIH+Y
Sbjct: 549 ISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEY 608
Query: 264 NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 323
NIKGTPEVYTIA+N CSQ GDW+FA S+YDDM KKGV PDEVF SAL+D AGHAG ++ A
Sbjct: 609 NIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKA 668
Query: 324 FEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA 383
FEILQ+A+ QGI +G +SYSSLMGACSNAKNW+KALELYE +KSIKL+PTVSTMNALITA
Sbjct: 669 FEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITA 728
Query: 384 LCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 443
LC+G+QLPK +EVLS+MK LGLCPNTITYSILLVA ERKDD +VGL LLSQAKEDG+ PN
Sbjct: 729 LCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPN 788
Query: 444 LVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKW 482
LVM +CI G+C RR+EKA L E V+SF+SGRPQIENKW
Sbjct: 789 LVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKW 827
|
Length = 1060 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 80.7 bits (199), Expect = 6e-16
Identities = 87/388 (22%), Positives = 147/388 (37%), Gaps = 39/388 (10%)
Query: 81 FRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
F +L +P L T ++S C D ++ V + G D + +LI
Sbjct: 277 FTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSL 336
Query: 141 GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVF 200
G +VF M + ++ A+I G K G KA Y +M NV PD +
Sbjct: 337 GSWGEAEKVFSRMETK----DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITI 392
Query: 201 NALITACGQSGAVDRAFDV--LAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK 258
++++AC G +D + LAE + V + AL++ + +D+A EV+
Sbjct: 393 ASVLSACACLGDLDVGVKLHELAERKGLISYV----VVANALIEMYSKCKCIDKALEVFH 448
Query: 259 MIHKYN-IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 317
I + + I T + + +N F ++ + P+ V L A +
Sbjct: 449 NIPEKDVISWTSIIAGLRLNNRC------FEALIFFRQMLLTLKPNSVTLIAALSACARI 502
Query: 318 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL------- 370
G + EI GI G NA L+LY +
Sbjct: 503 GALMCGKEIHAHVLRTGI--------GFDGFLPNA-----LLDLYVRCGRMNYAWNQFNS 549
Query: 371 -KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGL 429
+ V + N L+T + +E+ + M G+ P+ +T+ LL AC R V GL
Sbjct: 550 HEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGL 609
Query: 430 MLLSQAKED-GVIPNLVMFKCIIGMCSR 456
+E + PNL + C++ + R
Sbjct: 610 EYFHSMEEKYSITPNLKHYACVVDLLGR 637
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 79.1 bits (195), Expect = 2e-15
Identities = 96/464 (20%), Positives = 181/464 (39%), Gaps = 79/464 (17%)
Query: 23 HDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFR 82
HD + QL + L G++ + + LLE M+ + + Y A F +C+ ++A++E R
Sbjct: 52 HDSNSQLRA---LCSHGQLEQALKLLESMQELRVPVDEDAYVA-LFRLCEWKRAVEEGSR 107
Query: 83 FFKLVPNPTLSTF-----NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137
+ + N ++S+ + A+ V + E L + + L+
Sbjct: 108 VCSRA-LSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFS----WNVLVGGY 162
Query: 138 AKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDR 197
AK+G D ++H M+ AG+ P+V+T+ ++ C +A+ + + + D
Sbjct: 163 AKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDV 222
Query: 198 VVFNALIT---ACGQSGAVDRAFDVLAEM--------------NAEVHP----------- 229
V NALIT CG + FD + N E
Sbjct: 223 DVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMREL 282
Query: 230 -VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDW--- 285
VDPD +TI +++ AC G RE++ + K V I G W
Sbjct: 283 SVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEA 342
Query: 286 ----------------------------EFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 317
+ A Y M + V PDE+ +++++
Sbjct: 343 EKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACL 402
Query: 318 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 377
G ++ ++ + A+ +G+ ++ ++L+ S K KALE++ ++ + V +
Sbjct: 403 GDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP----EKDVISW 458
Query: 378 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 421
++I L ++ + + M L L PN++T L AC R
Sbjct: 459 TSIIAGLRLNNRCFEALIFFRQML-LTLKPNSVTLIAALSACAR 501
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 64.7 bits (159), Expect = 1e-13
Identities = 23/45 (51%), Positives = 29/45 (64%)
Query: 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAK 174
Y TLI K GKV+ ++F+EM GI+PNV+TY LIDG K
Sbjct: 6 YNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 70.7 bits (173), Expect = 7e-13
Identities = 49/213 (23%), Positives = 99/213 (46%), Gaps = 18/213 (8%)
Query: 55 GLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQV 114
L+DM ++ C I++A F +P T +N +++ A SE A +
Sbjct: 264 ALIDM--------YSKCGD---IEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCL 312
Query: 115 LRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAK 174
++++G+ D ++ +I ++ ++ + ++ G ++ AL+D +K
Sbjct: 313 YYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSK 372
Query: 175 AGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH 234
G++ A + M KN+ + +NALI G G +A ++ M AE V P+H
Sbjct: 373 WGRMEDARNVFDRMPRKNL----ISWNALIAGYGNHGRGTKAVEMFERMIAE--GVAPNH 426
Query: 235 ITIGALMKACANAGQVDRAREVYK-MIHKYNIK 266
+T A++ AC +G ++ E+++ M + IK
Sbjct: 427 VTFLAVLSACRYSGLSEQGWEIFQSMSENHRIK 459
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 67.6 bits (165), Expect = 6e-12
Identities = 88/393 (22%), Positives = 156/393 (39%), Gaps = 25/393 (6%)
Query: 71 CKSQKAIKEAFRFFKLVPNPTL--STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCK 128
C + E F + TL ST++ L+ C + K V V+ +G + D
Sbjct: 100 CGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQY 159
Query: 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM 188
+ ++ K G + +F EM E N+ ++G +I G AG +AF + M
Sbjct: 160 MMNRVLLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREM 215
Query: 189 RSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 248
+ F ++ A G+ RA L + V D AL+ + G
Sbjct: 216 WEDGSDAEPRTFVVMLRASAGLGSA-RAGQQLHCCVLKTGVVG-DTFVSCALIDMYSKCG 273
Query: 249 QVDRAREVYKMIHKYNIKGTPEVYTIAINCC----SQTGDWEFACSVYDDMTKKGVIPDE 304
++ AR V+ G PE T+A N + G E A +Y +M GV D+
Sbjct: 274 DIEDARCVF--------DGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQ 325
Query: 305 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 364
S +I +E A + G + I++ ++L+ S + A +++
Sbjct: 326 FTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDR 385
Query: 365 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 424
M + + + NALI + + K +E+ M + G+ PN +T+ +L AC
Sbjct: 386 MP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGL 441
Query: 425 VEVGL-MLLSQAKEDGVIPNLVMFKCIIGMCSR 456
E G + S ++ + P + + C+I + R
Sbjct: 442 SEQGWEIFQSMSENHRIKPRAMHYACMIELLGR 474
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 65.7 bits (160), Expect = 3e-11
Identities = 69/353 (19%), Positives = 152/353 (43%), Gaps = 14/353 (3%)
Query: 77 IKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
+ +A R F +P L+++ ++ + + AF + R + E G A+ + + ++
Sbjct: 174 LIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRA 233
Query: 137 CAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD 196
A G A ++ ++ G+ + ALID +K G + A + M K
Sbjct: 234 SAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTT--- 290
Query: 197 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREV 256
V +N+++ G + A + EM V D T +++ + ++ A++
Sbjct: 291 -VAWNSMLAGYALHGYSEEALCLYYEMRDS--GVSIDQFTFSIMIRIFSRLALLEHAKQA 347
Query: 257 YKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 316
+ + + T ++ S+ G E A +V+D M +K +I +ALI G+
Sbjct: 348 HAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLIS----WNALIAGYGN 403
Query: 317 AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM-KSIKLKPTVS 375
G+ A E+ + +G++ +++ +++ AC + ++ E+++ M ++ ++KP
Sbjct: 404 HGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAM 463
Query: 376 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVG 428
+I L L E + ++ P ++ LL AC ++E+G
Sbjct: 464 HYACMIELLGREGLLD---EAYAMIRRAPFKPTVNMWAALLTACRIHKNLELG 513
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 56.6 bits (138), Expect = 9e-11
Identities = 17/48 (35%), Positives = 27/48 (56%)
Query: 160 PNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITAC 207
P+V TY LIDG K G+V +A + M+ + +KP+ ++ LI
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 62.2 bits (151), Expect = 3e-10
Identities = 41/181 (22%), Positives = 82/181 (45%), Gaps = 7/181 (3%)
Query: 124 KADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFG 183
+ D + L+T GK E+F+ MV +G+ P+ T+ +L+ C+++G V +
Sbjct: 551 EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLE 610
Query: 184 AYGIMRSK-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 242
+ M K ++ P+ + ++ G++G + A++ + +M P+ PD GAL+
Sbjct: 611 YFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-----PITPDPAVWGALLN 665
Query: 243 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 302
AC V+ + I + + + Y + N + G W+ V M + G+
Sbjct: 666 ACRIHRHVELGELAAQHIFELD-PNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTV 724
Query: 303 D 303
D
Sbjct: 725 D 725
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 54.7 bits (133), Expect = 5e-10
Identities = 17/45 (37%), Positives = 27/45 (60%)
Query: 372 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 416
P V T N LI C ++ + +++ ++MK G+ PN TYSIL+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILI 45
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 53.9 bits (131), Expect = 9e-10
Identities = 15/48 (31%), Positives = 27/48 (56%)
Query: 339 IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386
+++Y++L+ ++AL+L+ MK +KP V T + LI LC
Sbjct: 3 VVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 59.9 bits (145), Expect = 2e-09
Identities = 90/409 (22%), Positives = 161/409 (39%), Gaps = 43/409 (10%)
Query: 21 YAHDVSEQLHSYNRLIRQ----GRISECIDLLEDMERKGLLD---MDKVYHARFFNVCKS 73
+A DVS N LI+ G E + ME K + M Y
Sbjct: 319 FAVDVS----VCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGL----P 370
Query: 74 QKAIKEAFRFFKLVP-NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTT 132
KA+ E + + +P T ++S CA D + ++ L + GL + +
Sbjct: 371 DKAL-ETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANA 429
Query: 133 LITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN 192
LI +K +D EVFH + E +V ++ ++I G + +A + M
Sbjct: 430 LIEMYSKCKCIDKALEVFHNIP----EKDVISWTSIIAGLRLNNRCFEALIFFRQMLLT- 484
Query: 193 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV--HPVDPDHITIGALMKACANAGQV 250
+KP+ V A ++AC + GA+ E++A V + D AL+ G++
Sbjct: 485 LKPNSVTLIAALSACARIGALMCG----KEIHAHVLRTGIGFDGFLPNALLDLYVRCGRM 540
Query: 251 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL 310
+ A + H+ ++ + I + G A +++ M + GV PDEV +L
Sbjct: 541 NYAWNQFN-SHEKDVVS----WNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISL 595
Query: 311 IDFAGHAGKVEAAFEILQEAKNQ-GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 369
+ +G V E + + I+ + Y+ ++ A +A M I
Sbjct: 596 LCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-PIT 654
Query: 370 LKPTVSTMNALITALCDGDQLPKTMEV--LSDMKSLGLCPNTITYSILL 416
P A+ AL + ++ + +E+ L+ L PN++ Y ILL
Sbjct: 655 PDP------AVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILL 697
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 57.6 bits (139), Expect = 1e-08
Identities = 45/173 (26%), Positives = 83/173 (47%), Gaps = 13/173 (7%)
Query: 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151
+ ++N+L++ + A ++ + E+G+ D + +L+ C++SG V E FH
Sbjct: 554 VVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFH 613
Query: 152 EM-VNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210
M I PN+ Y ++D +AG++ + AY + + PD V+ AL+ AC
Sbjct: 614 SMEEKYSITPNLKHYACVVDLLGRAGKLTE---AYNFINKMPITPDPAVWGALLNACRIH 670
Query: 211 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC---ANAGQVDRAREVYKMI 260
V+ L E+ A+ H + D ++G + C A+AG+ D V K +
Sbjct: 671 RHVE-----LGELAAQ-HIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTM 717
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 44.3 bits (106), Expect = 2e-06
Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
Query: 195 PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 246
PD V +N LI + G V+ A + EM + + P+ T L+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEM--KKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 44.0 bits (105), Expect = 2e-06
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNV 162
Y TLI K+G+V+ E+F EM GIEP+V
Sbjct: 3 YNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 7e-06
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEP 160
Y L+ AK+G D V EM +G++P
Sbjct: 3 TYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 41.2 bits (98), Expect = 3e-05
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 312
Y I+ + G E A ++++M K+G+ P+ S LID
Sbjct: 6 YNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILID 46
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 8e-05
Identities = 9/34 (26%), Positives = 17/34 (50%)
Query: 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 304
Y I+ + G E A ++ +M ++G+ PD
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 8e-05
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 163 HTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD 196
TY LIDG KAG+V +A + M+ + ++PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 39.3 bits (93), Expect = 1e-04
Identities = 18/50 (36%), Positives = 25/50 (50%)
Query: 302 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 351
PD V + LID GKVE A ++ E K +GI + +YS L+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 38.3 bits (90), Expect = 2e-04
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 162 VHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKP 195
+ TY AL+ AKAG A M++ +KP
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 38.1 bits (90), Expect = 2e-04
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 157 GIEPNVHTYGALIDGCAKAGQVAKAF 182
G++P+V TY LIDG +AG+V +A
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAV 27
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 37.3 bits (88), Expect = 5e-04
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 191 KNVKPDRVVFNALITACGQSGAVDRAFDVLAEM 223
K +KPD V +N LI ++G VD A ++L EM
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 37.0 bits (87), Expect = 5e-04
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGI 158
Y +LI+ K+GK++ E+F EM G+
Sbjct: 3 YNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 37.0 bits (87), Expect = 7e-04
Identities = 13/50 (26%), Positives = 24/50 (48%)
Query: 232 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ 281
PD +T L+ G+V+ A +++ + K IK Y+I I+ +
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 36.8 bits (86), Expect = 8e-04
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 339 IISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 372
+ +Y++L+ A + A + AL + E MK+ LKP
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 36.6 bits (86), Expect = 0.001
Identities = 14/50 (28%), Positives = 27/50 (54%)
Query: 407 PNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 456
P+ +TY+ L+ +K VE L L ++ K+ G+ PN+ + +I +
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 35.1 bits (82), Expect = 0.002
Identities = 11/35 (31%), Positives = 22/35 (62%)
Query: 340 ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 374
++Y++L+ A ++ALEL++ MK ++P V
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 488 | |||
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.94 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.93 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.93 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.92 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.92 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.91 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.91 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.91 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.91 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.91 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.9 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.9 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.89 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.88 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.87 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.84 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.84 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.83 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.82 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.8 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.76 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.74 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.72 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.71 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.71 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.7 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.7 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.69 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.69 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.69 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.69 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.69 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.68 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.68 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.68 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.67 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.66 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.65 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.64 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.62 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.62 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.61 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.6 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.58 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.53 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.52 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.52 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.48 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.47 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.45 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.45 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.45 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.44 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.44 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.43 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.43 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.42 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.41 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.4 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.38 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.37 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.37 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.34 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.31 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.3 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.3 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.27 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.27 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.25 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.23 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.23 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.22 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.2 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.2 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.19 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.19 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.18 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.17 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.15 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.14 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.14 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.11 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.1 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.05 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.05 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.04 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.99 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.99 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.97 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.91 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.86 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.85 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.84 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.84 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.82 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.81 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.8 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.78 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.76 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.75 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.73 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.73 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.71 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.7 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.7 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.69 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.68 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.67 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.67 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.67 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.66 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.65 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.65 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.65 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.63 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.63 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.6 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.58 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.56 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.55 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.53 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.49 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.48 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.47 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.45 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.44 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.41 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.41 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.38 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.18 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.17 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.16 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.15 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.11 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.1 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.08 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 98.06 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.03 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 98.03 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.98 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.95 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.95 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.92 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.89 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.89 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.88 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.87 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.87 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.86 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.81 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.79 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.78 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.77 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.75 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.74 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.72 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.71 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.7 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.7 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.68 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.68 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.67 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.64 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.64 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.63 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.59 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.59 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.59 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.59 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.58 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.57 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.55 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.54 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.53 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.51 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.47 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.38 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.37 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.37 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.33 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.33 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.32 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.3 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.28 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.25 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.24 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 97.24 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.22 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.18 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.16 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.11 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.09 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.0 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.98 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.91 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.89 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.86 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.84 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.83 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.81 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.8 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.78 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.73 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.66 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.64 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.63 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.59 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 96.57 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 96.57 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 96.51 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.49 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.44 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.41 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.31 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.29 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 96.26 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.24 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.22 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.2 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 96.19 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.15 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.14 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.09 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.07 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 96.04 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.99 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 95.99 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 95.96 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 95.93 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.92 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.91 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 95.85 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 95.59 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.48 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 95.4 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.35 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 95.32 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 95.31 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 95.3 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 95.29 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 95.21 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 95.2 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 95.12 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 95.11 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 95.05 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 94.89 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 94.81 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 94.8 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 94.79 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.74 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 94.73 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.6 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 94.46 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 94.4 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 94.39 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 94.38 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 94.33 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 94.29 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 94.18 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 94.17 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 93.94 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 93.68 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 93.57 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 93.49 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 93.41 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 93.36 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 93.3 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 92.95 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 92.89 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 92.67 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 92.65 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 92.52 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 92.43 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 92.38 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 92.28 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 92.18 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 92.06 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 91.95 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 91.95 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 91.76 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 91.63 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 91.55 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 91.55 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 91.39 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 91.31 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 91.26 | |
| PF07575 | 566 | Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR0 | 91.22 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 90.83 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 90.78 | |
| PRK09687 | 280 | putative lyase; Provisional | 90.73 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 90.58 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 90.55 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 90.45 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 90.41 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 90.39 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 90.33 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 90.32 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 89.58 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 89.57 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 89.17 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 88.81 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 88.74 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 88.62 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 88.53 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 88.29 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 88.05 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 87.44 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 87.18 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 87.15 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 86.84 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 86.79 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 86.52 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 86.4 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 86.39 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 85.98 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 85.93 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 85.69 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 85.65 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 85.62 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 85.56 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 85.4 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 85.4 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 84.95 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 84.94 | |
| PF07163 | 309 | Pex26: Pex26 protein; InterPro: IPR010797 This fam | 84.64 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 84.64 | |
| PF07163 | 309 | Pex26: Pex26 protein; InterPro: IPR010797 This fam | 84.43 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 84.08 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 83.18 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 82.6 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 81.9 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 81.81 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 81.59 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 80.79 |
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-70 Score=545.14 Aligned_cols=463 Identities=79% Similarity=1.275 Sum_probs=448.3
Q ss_pred cCCCchhHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCCCCCHHHHHHHHHH
Q 011323 22 AHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSV 101 (488)
Q Consensus 22 ~~~~~~~~~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~ 101 (488)
+.+...++..++.+++.|++++|+++|++|.+.+..+++..++..++..|...|..++|.++|+.+..||..+|+.++.+
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a 446 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSV 446 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 45678899999999999999999999999999998889999999999999999999999999999999999999999999
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 011323 102 CASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKA 181 (488)
Q Consensus 102 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 181 (488)
|++.|+++.|.++|+.|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|
T Consensus 447 ~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeA 526 (1060)
T PLN03218 447 CASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKA 526 (1060)
T ss_pred HHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011323 182 FGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH 261 (488)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 261 (488)
.++|+.|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.....++.||..+|++++.+|++.|++++|.++|+.|.
T Consensus 527 l~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~ 606 (1060)
T PLN03218 527 FGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIH 606 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999987555789999999999999999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHH
Q 011323 262 KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIIS 341 (488)
Q Consensus 262 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 341 (488)
+.++.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|.+.|+.|+..+
T Consensus 607 e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~t 686 (1060)
T PLN03218 607 EYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVS 686 (1060)
T ss_pred HcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhh
Q 011323 342 YSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 421 (488)
Q Consensus 342 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 421 (488)
|+.++.+|++.|++++|.++|++|.+.++.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++
T Consensus 687 ynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k 766 (1060)
T PLN03218 687 YSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASER 766 (1060)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCCccccceee
Q 011323 422 KDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWYV 484 (488)
Q Consensus 422 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~w~~ 484 (488)
.|++++|.+++++|.+.|+.||..+|++++.+|.+++++|..+.+.+..++++++.+...|+.
T Consensus 767 ~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~ 829 (1060)
T PLN03218 767 KDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTS 829 (1060)
T ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHH
Confidence 999999999999999999999999999999988878999999999888888887776667753
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-62 Score=484.60 Aligned_cols=428 Identities=23% Similarity=0.404 Sum_probs=254.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCC----CCCHHHHHHHHHHHHhcCCh
Q 011323 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP----NPTLSTFNMLMSVCASSKDS 108 (488)
Q Consensus 33 ~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~ 108 (488)
+.+.+.|.+++|+.+|..|.. ++...+..++..|.+.|++++|.++|+.+. .||..+|+.+|.+|++.|++
T Consensus 414 ~~~~~~g~~~eAl~lf~~M~~-----pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~v 488 (1060)
T PLN03218 414 KACKKQRAVKEAFRFAKLIRN-----PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKV 488 (1060)
T ss_pred HHHHHCCCHHHHHHHHHHcCC-----CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCH
Confidence 334455666666666655542 233444455555555566666666665543 35666666666666666666
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011323 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM 188 (488)
Q Consensus 109 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 188 (488)
++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|+.|.+.|+.||..+|+.++.+|++.|++++|.++|++|
T Consensus 489 d~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM 568 (1060)
T PLN03218 489 DAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEM 568 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred Hh--CCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 011323 189 RS--KNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266 (488)
Q Consensus 189 ~~--~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 266 (488)
.. .|+.||..+|+.++.+|++.|++++|.++|+.|... ++.|+..+|+.++.+|++.|++++|.++|+.|.+.|+.
T Consensus 569 ~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~--gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~ 646 (1060)
T PLN03218 569 KAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEY--NIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVK 646 (1060)
T ss_pred HHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Confidence 54 345566666666666666666666666666666553 45555566666666666666666666666666666666
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHH
Q 011323 267 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM 346 (488)
Q Consensus 267 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 346 (488)
||..+|+.++.+|++.|++++|.+++++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.|+..+|+.++
T Consensus 647 PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI 726 (1060)
T PLN03218 647 PDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALI 726 (1060)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 66666666666666666666666666666666666666666666666666666666666666666656666666666666
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhh-----
Q 011323 347 GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER----- 421 (488)
Q Consensus 347 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----- 421 (488)
.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|.+.|+.||..+|+.++..|.+
T Consensus 727 ~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka 806 (1060)
T PLN03218 727 TALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKA 806 (1060)
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666666666666666666666666666666666666666666666666666665544321
Q ss_pred ------------------cCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhh--cHHHHHHHHHH
Q 011323 422 ------------------KDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEH 467 (488)
Q Consensus 422 ------------------~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~--~~~~a~~~~~~ 467 (488)
.+..+.|..+|++|.+.|+.||..||+.+|.++.. ..+.+..+.+.
T Consensus 807 ~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~ 872 (1060)
T PLN03218 807 CALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIEN 872 (1060)
T ss_pred hhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 01224556666666666666666666666643322 34444444443
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-61 Score=484.39 Aligned_cols=439 Identities=20% Similarity=0.292 Sum_probs=378.2
Q ss_pred hHHHHHHH----HhcCCHHHHHHHHHHHHHCCCCCchH----------------------------------HHHHHHHH
Q 011323 28 QLHSYNRL----IRQGRISECIDLLEDMERKGLLDMDK----------------------------------VYHARFFN 69 (488)
Q Consensus 28 ~~~~~~~l----~~~g~~~~A~~~~~~~~~~~~~~~~~----------------------------------~~~~~l~~ 69 (488)
+..+|+.+ .+.|++++|+++|++|...|+.|+.. .+...++.
T Consensus 151 d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~ 230 (857)
T PLN03077 151 DLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALIT 230 (857)
T ss_pred CeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHH
Confidence 44455554 48999999999999999888655422 22345566
Q ss_pred HHhhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHH
Q 011323 70 VCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV 149 (488)
Q Consensus 70 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 149 (488)
.+.+.|++++|.++|+.++.+|..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+.+.+.++
T Consensus 231 ~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l 310 (857)
T PLN03077 231 MYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREM 310 (857)
T ss_pred HHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHH
Confidence 77888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCC
Q 011323 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHP 229 (488)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 229 (488)
+..+.+.|+.||..+|++|+.+|++.|++++|.++|++|. .||..+|+.++.+|.+.|++++|+++|++|... +
T Consensus 311 ~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~--g 384 (857)
T PLN03077 311 HGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQD--N 384 (857)
T ss_pred HHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHh--C
Confidence 9999999999999999999999999999999999999996 578899999999999999999999999999875 7
Q ss_pred CCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 011323 230 VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 309 (488)
Q Consensus 230 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 309 (488)
+.||..+|+.++.+|++.|+++.+.++++.+.+.|+.++..+++.++.+|++.|++++|.++|++|.+. |..+|+.
T Consensus 385 ~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~----d~vs~~~ 460 (857)
T PLN03077 385 VSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEK----DVISWTS 460 (857)
T ss_pred CCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCC----CeeeHHH
Confidence 889999999999999999999999999999999999999999999999999999998888888887653 4555666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHH-----------------------------------HHHHHHHhcCC
Q 011323 310 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYS-----------------------------------SLMGACSNAKN 354 (488)
Q Consensus 310 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-----------------------------------~l~~~~~~~g~ 354 (488)
++.+|++.|+.++|..+|++|.. +++||..+|+ .++.+|++.|+
T Consensus 461 mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~ 539 (857)
T PLN03077 461 IIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGR 539 (857)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCC
Confidence 66666666666666666666554 3455555555 45555556666
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHH
Q 011323 355 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 434 (488)
Q Consensus 355 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 434 (488)
+++|.++|+.+ .||..+|+.+|.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|.+.|++++|.++|+.
T Consensus 540 ~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~ 614 (857)
T PLN03077 540 MNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHS 614 (857)
T ss_pred HHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHH
Confidence 66666666554 5788999999999999999999999999999999999999999999999999999999999999
Q ss_pred HH-HcCCCCcHHHHHHHHHHHhh--cHHHHHHHHHHhhhccCCCCccccceeeeec
Q 011323 435 AK-EDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHVLSFNSGRPQIENKWYVTLC 487 (488)
Q Consensus 435 ~~-~~~~~~~~~~~~~li~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~w~~ll~ 487 (488)
|. +.|+.|+..+|+++++++.+ ++++|.++++.| |..|+ ...|++||+
T Consensus 615 M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m----~~~pd-~~~~~aLl~ 665 (857)
T PLN03077 615 MEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM----PITPD-PAVWGALLN 665 (857)
T ss_pred HHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC----CCCCC-HHHHHHHHH
Confidence 99 67999999999999999998 899999999886 34443 578988875
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-57 Score=450.39 Aligned_cols=431 Identities=18% Similarity=0.275 Sum_probs=310.4
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 011323 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLR 116 (488)
Q Consensus 37 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 116 (488)
+.++++.|.+++..|.+.|+.| +..+...++..+.+.|++++|.++|+.++.||..+|+.++.+|++.|++++|+++|+
T Consensus 135 ~~~~~~~a~~l~~~m~~~g~~~-~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~ 213 (697)
T PLN03081 135 ALKSIRCVKAVYWHVESSGFEP-DQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFR 213 (697)
T ss_pred hCCCHHHHHHHHHHHHHhCCCc-chHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHH
Confidence 4555555666666555555433 344455555666677777777777777777777777777777777777777777777
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 011323 117 LVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD 196 (488)
Q Consensus 117 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 196 (488)
+|.+.|+.|+..+|+.++.++++.|..+.+.+++..+.+.|+.||..+|++|+.+|++.|++++|.++|++|. .+|
T Consensus 214 ~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~ 289 (697)
T PLN03081 214 EMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKT 289 (697)
T ss_pred HHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCC
Confidence 7777777777777777777777777777777777777777777777777777777777777777777777775 356
Q ss_pred HhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 011323 197 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAI 276 (488)
Q Consensus 197 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 276 (488)
..+|+.++.+|++.|+.++|.++|++|... ++.||..||+.++.+|++.|+++.|.+++..+.+.|+.|+..+++.++
T Consensus 290 ~vt~n~li~~y~~~g~~~eA~~lf~~M~~~--g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li 367 (697)
T PLN03081 290 TVAWNSMLAGYALHGYSEEALCLYYEMRDS--GVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALV 367 (697)
T ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHH
Confidence 777777777777777777777777777664 567777777777777777777777777777777777777777777777
Q ss_pred HHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHH
Q 011323 277 NCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 356 (488)
Q Consensus 277 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 356 (488)
.+|++.|++++|.++|++|.+ ||..+|+++|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|+.+
T Consensus 368 ~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~ 443 (697)
T PLN03081 368 DLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSE 443 (697)
T ss_pred HHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHH
Confidence 777777777777777777754 4667777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHh-CCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHH
Q 011323 357 KALELYEHMKS-IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 435 (488)
Q Consensus 357 ~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 435 (488)
+|.++|+.|.+ .|+.|+..+|+.++.+|++.|++++|.+++++| ++.|+..+|+.++.+|...|+++.|.++++++
T Consensus 444 ~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l 520 (697)
T PLN03081 444 QGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKL 520 (697)
T ss_pred HHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 77777777764 577777777777777777777777777777655 35677777777777777777777777777776
Q ss_pred HHcCCCCc-HHHHHHHHHHHhh--cHHHHHHHHHHhhhccCCCCccccceee
Q 011323 436 KEDGVIPN-LVMFKCIIGMCSR--RYEKARTLNEHVLSFNSGRPQIENKWYV 484 (488)
Q Consensus 436 ~~~~~~~~-~~~~~~li~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~w~~ 484 (488)
.+ +.|+ ..+|..++.+|.+ ++++|.++.+.|+.. ........+|..
T Consensus 521 ~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~-g~~k~~g~s~i~ 569 (697)
T PLN03081 521 YG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK-GLSMHPACTWIE 569 (697)
T ss_pred hC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc-CCccCCCeeEEE
Confidence 54 3343 4567777777765 777777777776643 223333455544
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-57 Score=448.54 Aligned_cols=428 Identities=18% Similarity=0.262 Sum_probs=401.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCC----CCCHHHHHHHHHHHHhcC
Q 011323 31 SYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP----NPTLSTFNMLMSVCASSK 106 (488)
Q Consensus 31 ~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~ 106 (488)
.+..+.+.|++++|+++|++|...+...++..++..++..+.+.++.+.|.+++..+. .||..+|+.++..|++.|
T Consensus 93 ~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g 172 (697)
T PLN03081 93 QIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCG 172 (697)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCC
Confidence 3445568999999999999999876445677777888888999999999999998764 689999999999999999
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 011323 107 DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYG 186 (488)
Q Consensus 107 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 186 (488)
+++.|.++|++|. .||..+|+.++.+|++.|++++|.++|++|.+.|+.|+..+|+.++.++++.|..+.+.+++.
T Consensus 173 ~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~ 248 (697)
T PLN03081 173 MLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHC 248 (697)
T ss_pred CHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHH
Confidence 9999999999996 589999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 011323 187 IMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266 (488)
Q Consensus 187 ~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 266 (488)
.+.+.|+.||..+++.++.+|++.|++++|.++|++|. .+|..+|+.++.+|++.|++++|.++|+.|.+.|+.
T Consensus 249 ~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~------~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~ 322 (697)
T PLN03081 249 CVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP------EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVS 322 (697)
T ss_pred HHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC------CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999985 368899999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHH
Q 011323 267 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM 346 (488)
Q Consensus 267 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 346 (488)
||..+|+.++.+|++.|++++|.+++..|.+.|+.||..+++.++.+|++.|++++|.++|++|.+ ||..+||.++
T Consensus 323 pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI 398 (697)
T PLN03081 323 IDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALI 398 (697)
T ss_pred CCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999864 6889999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHh-CCCCCCHHHHHHHHHHHhhcCCH
Q 011323 347 GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS-LGLCPNTITYSILLVACERKDDV 425 (488)
Q Consensus 347 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~g~~ 425 (488)
.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|..++|.++|+.|.+ .|+.|+..+|+.++.+|++.|++
T Consensus 399 ~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~ 478 (697)
T PLN03081 399 AGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLL 478 (697)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCH
Confidence 99999999999999999999999999999999999999999999999999999985 69999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHhh--cHHHHHHHHHHhhhccCCC
Q 011323 426 EVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHVLSFNSGR 475 (488)
Q Consensus 426 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~--~~~~a~~~~~~~~~~~~~~ 475 (488)
++|.+++++| ++.|+..+|++++.+|.. +++.|..+.+.+..+.|.+
T Consensus 479 ~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~ 527 (697)
T PLN03081 479 DEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEK 527 (697)
T ss_pred HHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCC
Confidence 9999998754 688999999999999986 8999999999887655543
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-57 Score=454.34 Aligned_cols=441 Identities=19% Similarity=0.292 Sum_probs=311.9
Q ss_pred chhHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCchHH----------------------------------HHHHHHHHH
Q 011323 26 SEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKV----------------------------------YHARFFNVC 71 (488)
Q Consensus 26 ~~~~~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~----------------------------------~~~~l~~~~ 71 (488)
......+..+.+.|++++|+++|++|.+.|..|+... ....++..+
T Consensus 52 ~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~ 131 (857)
T PLN03077 52 HDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMF 131 (857)
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHH
Confidence 3344555667789999999999999988765333222 123344556
Q ss_pred hhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHH
Q 011323 72 KSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151 (488)
Q Consensus 72 ~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 151 (488)
.+.|+++.|.++|+.++++|..+|+.+|.+|++.|++++|+++|++|...|+.||..||+.++.+|+..+++..+.+++.
T Consensus 132 ~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~ 211 (857)
T PLN03077 132 VRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHA 211 (857)
T ss_pred HhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHH
Confidence 77889999999999999999999999999999999999999999999999999988887666655554444444444444
Q ss_pred HHHHcCCCC-------------------------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHH
Q 011323 152 EMVNAGIEP-------------------------------NVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVF 200 (488)
Q Consensus 152 ~~~~~~~~~-------------------------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 200 (488)
.+.+.|+.| |..+||+++.+|++.|++++|+++|++|...|+.||..||
T Consensus 212 ~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty 291 (857)
T PLN03077 212 HVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTI 291 (857)
T ss_pred HHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHH
Confidence 444444444 4555555555555555555555555555555555555555
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 011323 201 NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCS 280 (488)
Q Consensus 201 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 280 (488)
+.++.+|.+.|+.+.+.+++..+... ++.||..+|+.++.+|++.|++++|.++|+.|. .|+..+|+.++.+|+
T Consensus 292 ~~ll~a~~~~g~~~~a~~l~~~~~~~--g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~ 365 (857)
T PLN03077 292 TSVISACELLGDERLGREMHGYVVKT--GFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYE 365 (857)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHHHh--CCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHH
Confidence 55555555555555555555555553 455666666666666666666666666666654 245556666666666
Q ss_pred ccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHH
Q 011323 281 QTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALE 360 (488)
Q Consensus 281 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 360 (488)
+.|++++|.++|++|.+.|+.||..+|+.++.+|++.|+++.|.+++..+.+.|+.|+..+++.++.+|++.|++++|.+
T Consensus 366 ~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~ 445 (857)
T PLN03077 366 KNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALE 445 (857)
T ss_pred hCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHH
Confidence 66666677777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCC---------------------------------
Q 011323 361 LYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP--------------------------------- 407 (488)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p--------------------------------- 407 (488)
+|++|.+ +|..+|+.++.+|++.|+.++|+.+|++|.. ++.|
T Consensus 446 vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~ 520 (857)
T PLN03077 446 VFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGI 520 (857)
T ss_pred HHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCC
Confidence 7777653 4555666666666666666666666666653 2344
Q ss_pred --------------------------------CHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHh
Q 011323 408 --------------------------------NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS 455 (488)
Q Consensus 408 --------------------------------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 455 (488)
|..+|+.++.+|++.|+.++|.++|++|.+.|+.||..||+.+|.+|.
T Consensus 521 ~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~ 600 (857)
T PLN03077 521 GFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACS 600 (857)
T ss_pred CccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHh
Confidence 455677788888889999999999999999999999999999999998
Q ss_pred h--cHHHHHHHHHHhhhccCCCCc
Q 011323 456 R--RYEKARTLNEHVLSFNSGRPQ 477 (488)
Q Consensus 456 ~--~~~~a~~~~~~~~~~~~~~~~ 477 (488)
+ ++++|.++.+.|....+..|+
T Consensus 601 ~~g~v~ea~~~f~~M~~~~gi~P~ 624 (857)
T PLN03077 601 RSGMVTQGLEYFHSMEEKYSITPN 624 (857)
T ss_pred hcChHHHHHHHHHHHHHHhCCCCc
Confidence 6 899999999999866666665
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-28 Score=254.76 Aligned_cols=435 Identities=12% Similarity=0.044 Sum_probs=262.0
Q ss_pred CCchhHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCC---CCCHHHHHHHHH
Q 011323 24 DVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMS 100 (488)
Q Consensus 24 ~~~~~~~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~ 100 (488)
...........+++.|++++|+++++.+.... |.+...+..++..+...|++++|.+.|+++. +.+...+..+..
T Consensus 430 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 507 (899)
T TIGR02917 430 LGRADLLLILSYLRSGQFDKALAAAKKLEKKQ--PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLAR 507 (899)
T ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHH
Confidence 33444445555667777777777777776654 4555556666666666777777777776543 344555666666
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 011323 101 VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAK 180 (488)
Q Consensus 101 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 180 (488)
.+...|++++|.+.++.+.+.+ +.+..++..+...+.+.|+.++|...++++.+.+ +.+...+..++..+...|++++
T Consensus 508 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 585 (899)
T TIGR02917 508 IDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKK 585 (899)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHH
Confidence 6677777777777777766553 4456666666666667777777777776666543 3345556666666666777777
Q ss_pred HHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHH
Q 011323 181 AFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMI 260 (488)
Q Consensus 181 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 260 (488)
|..+++.+.... +.+...|..+..++...|++++|...|+.+.... +.+...+..+..++...|++++|...++.+
T Consensus 586 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 661 (899)
T TIGR02917 586 ALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ---PDSALALLLLADAYAVMKNYAKAITSLKRA 661 (899)
T ss_pred HHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 777776666543 4455666666666666677777777666665431 123345556666666666666666666666
Q ss_pred HhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHH
Q 011323 261 HKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGII 340 (488)
Q Consensus 261 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 340 (488)
.+.. +.+...+..++..+...|++++|..+++.+.+.+.. +...+..+...+...|++++|...++.+...+ |+..
T Consensus 662 ~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~ 737 (899)
T TIGR02917 662 LELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPK-AALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQ 737 (899)
T ss_pred HhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-ChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCch
Confidence 6543 444566666666666666666666666666655432 45555566666666666666666666666543 2334
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 011323 341 SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACE 420 (488)
Q Consensus 341 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 420 (488)
++..+..++.+.|++++|.+.++.+.+.. +.+...+..+...|...|++++|.+.|+++.+.. +++...+..+...+.
T Consensus 738 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~ 815 (899)
T TIGR02917 738 NAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYL 815 (899)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 55556666666666666666666665543 3455566666666666666666666666665542 344555666666666
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhh--cHHHHHHHHHHhhhccCC
Q 011323 421 RKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHVLSFNSG 474 (488)
Q Consensus 421 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~--~~~~a~~~~~~~~~~~~~ 474 (488)
..|+ .+|+.+++++.+.... +...+..+...+.. ++++|....+.+....|.
T Consensus 816 ~~~~-~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~ 869 (899)
T TIGR02917 816 ELKD-PRALEYAEKALKLAPN-IPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE 869 (899)
T ss_pred hcCc-HHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 6666 5566666665553211 12223333333332 566666666666655554
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-27 Score=248.68 Aligned_cols=433 Identities=14% Similarity=0.085 Sum_probs=279.9
Q ss_pred ccCCCchhHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCC---CCCHHHHHH
Q 011323 21 YAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNM 97 (488)
Q Consensus 21 ~~~~~~~~~~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ 97 (488)
.|.+..........+.+.|++++|.+.|+++.+.+ |.+......++..+...|++++|.+.|+.+. +.+..++..
T Consensus 461 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 538 (899)
T TIGR02917 461 QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE--PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILA 538 (899)
T ss_pred CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHH
Confidence 44444444445555556777777777777776654 4555555556666666677777777776553 345556666
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 011323 98 LMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQ 177 (488)
Q Consensus 98 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 177 (488)
+...+.+.|+.++|...++.+.+.+ +.+...+..++..+...|++++|.++++.+.+.. +.+..+|..+..++...|+
T Consensus 539 l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 616 (899)
T TIGR02917 539 LAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGD 616 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCC
Confidence 6677777777777777777766554 4455566667777777777777777777766543 4456667777777777777
Q ss_pred HHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHH
Q 011323 178 VAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY 257 (488)
Q Consensus 178 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 257 (488)
+++|...|+++.+.. +.+...+..+..++...|++++|...++++.... +.+..++..+...+...|++++|..++
T Consensus 617 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~ 692 (899)
T TIGR02917 617 LNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK---PDNTEAQIGLAQLLLAAKRTESAKKIA 692 (899)
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 777777777766543 3345566666677777777777777777666531 223456666666777777777777777
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc
Q 011323 258 KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV 337 (488)
Q Consensus 258 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 337 (488)
+.+.... +.+...+..+...+...|++++|...++.+...+. +..++..+..++.+.|++++|.+.+..+.+.. +.
T Consensus 693 ~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~ 768 (899)
T TIGR02917 693 KSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAP--SSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PN 768 (899)
T ss_pred HHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCC--CchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CC
Confidence 7776654 45556666666777777777777777777666543 33555566667777777777777777766653 44
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 011323 338 GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 417 (488)
Q Consensus 338 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 417 (488)
+...+..+...|...|++++|...|+++.+.. +++..+++.+...+...|+ .+|+..++++.+.. +-++.++..+..
T Consensus 769 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~ 845 (899)
T TIGR02917 769 DAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGW 845 (899)
T ss_pred CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHH
Confidence 56666677777777777777777777776654 4556666777777777777 66777777766531 334555666666
Q ss_pred HHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhh--cHHHHHHHHHHhh
Q 011323 418 ACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHVL 469 (488)
Q Consensus 418 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~--~~~~a~~~~~~~~ 469 (488)
.+...|++++|.++++++.+.+.. +..++..+...+.+ ++++|.++.+.++
T Consensus 846 ~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 846 LLVEKGEADRALPLLRKAVNIAPE-AAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 677777777777777777765443 55566666665554 6777766666653
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.5e-22 Score=205.08 Aligned_cols=429 Identities=12% Similarity=0.063 Sum_probs=325.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCCC--CC---HHHHH-----------
Q 011323 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--PT---LSTFN----------- 96 (488)
Q Consensus 33 ~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~---~~~~~----------- 96 (488)
..++..|++++|+..|++.++.. |.+...+..++.++...|++++|+..|+++.+ |+ ...|.
T Consensus 277 ~~~~~~g~~~~A~~~l~~aL~~~--P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~ 354 (1157)
T PRK11447 277 LAAVDSGQGGKAIPELQQAVRAN--PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLL 354 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHH
Confidence 44568899999999999999886 77888888899999999999999999987652 22 11121
Q ss_pred -HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 011323 97 -MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKA 175 (488)
Q Consensus 97 -~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 175 (488)
.....+.+.|++++|++.|+++.+.. +.+...+..+..++...|++++|++.|++..+.. +.+...+..+...|. .
T Consensus 355 ~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~ 431 (1157)
T PRK11447 355 IQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-Q 431 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-h
Confidence 12345778999999999999998874 5567788889999999999999999999998763 334666777777774 4
Q ss_pred CCHHHHHHHHHHHHhCCCC--------CCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCC-cchHHHHHHHHHh
Q 011323 176 GQVAKAFGAYGIMRSKNVK--------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD-HITIGALMKACAN 246 (488)
Q Consensus 176 ~~~~~a~~~~~~~~~~~~~--------~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~ 246 (488)
++.++|...++.+...... .....+..+...+...|++++|++.|++.... .|+ ...+..+...|.+
T Consensus 432 ~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~----~P~~~~~~~~LA~~~~~ 507 (1157)
T PRK11447 432 QSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL----DPGSVWLTYRLAQDLRQ 507 (1157)
T ss_pred cCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHH
Confidence 6789999888765432100 01223455677788899999999999999875 343 4466778889999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHH---------HHHHHHHHHHhc
Q 011323 247 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV---------FLSALIDFAGHA 317 (488)
Q Consensus 247 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---------~~~~l~~~~~~~ 317 (488)
.|++++|...++.+.+.. +.++..+..+...+...++.++|...++.+......++.. .+......+...
T Consensus 508 ~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~ 586 (1157)
T PRK11447 508 AGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDS 586 (1157)
T ss_pred cCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHC
Confidence 999999999999988765 4566666666667788999999999998865433222221 123456678889
Q ss_pred CCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHH
Q 011323 318 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVL 397 (488)
Q Consensus 318 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 397 (488)
|+.++|..+++. .+.++..+..+...+.+.|++++|...|+++.+.. +.+...+..++..|...|++++|++.+
T Consensus 587 G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l 660 (1157)
T PRK11447 587 GKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQL 660 (1157)
T ss_pred CCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999998872 34566777888999999999999999999998875 557888999999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCC-C----cHHHHHHHHHHHhh--cHHHHHHHHHHhhh
Q 011323 398 SDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVI-P----NLVMFKCIIGMCSR--RYEKARTLNEHVLS 470 (488)
Q Consensus 398 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~----~~~~~~~li~~~~~--~~~~a~~~~~~~~~ 470 (488)
+.+.+.. +.+..++..+..++...|++++|.++++++.+.... | +...+..+...+.. ++++|...++....
T Consensus 661 ~~ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 661 AKLPATA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HHHhccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9887642 334666777888899999999999999998875322 2 12334434444443 79999999888875
Q ss_pred ---ccCCCCcc
Q 011323 471 ---FNSGRPQI 478 (488)
Q Consensus 471 ---~~~~~~~~ 478 (488)
+.|..|.+
T Consensus 740 ~~~~~~~~p~~ 750 (1157)
T PRK11447 740 ASGITPTRPQD 750 (1157)
T ss_pred hcCCCCCCCCC
Confidence 33444443
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.4e-22 Score=178.89 Aligned_cols=434 Identities=13% Similarity=0.094 Sum_probs=268.5
Q ss_pred chhHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhC---CCCCHHHHHHHHHHH
Q 011323 26 SEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV---PNPTLSTFNMLMSVC 102 (488)
Q Consensus 26 ~~~~~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~l~~~~ 102 (488)
...+.....+.+.|++.+|.+...-.-+.+ |.+.....++...+....+++.....-... .+.-..+|..+..++
T Consensus 49 ~~~l~lah~~yq~gd~~~a~~h~nmv~~~d--~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~ 126 (966)
T KOG4626|consen 49 DDRLELAHRLYQGGDYKQAEKHCNMVGQED--PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANIL 126 (966)
T ss_pred hhHHHHHHHHHhccCHHHHHHHHhHhhccC--CCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHH
Confidence 346667777779999999999887776666 444444444444444434444333322211 234456777777777
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHH-HHHHHHHhcCCHHHH
Q 011323 103 ASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYG-ALIDGCAKAGQVAKA 181 (488)
Q Consensus 103 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a 181 (488)
-..|++++|+.+++.+.+.. +.....|..+..++...|+.+.|.+.|.+.++. .|+..... .+...+-..|+..+|
T Consensus 127 kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea 203 (966)
T KOG4626|consen 127 KERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEA 203 (966)
T ss_pred HHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchh
Confidence 77777777777777777653 335667777777777777777777777777665 45444332 333444456777777
Q ss_pred HHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHHH
Q 011323 182 FGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD-HITIGALMKACANAGQVDRAREVYKMI 260 (488)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~ 260 (488)
...|.+..+.. +-=...|+.|...+-..|+...|++.|++...- +|+ ...|..+...|...+.+++|...+.+.
T Consensus 204 ~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl----dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rA 278 (966)
T KOG4626|consen 204 KACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL----DPNFLDAYINLGNVYKEARIFDRAVSCYLRA 278 (966)
T ss_pred HHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcC----CCcchHHHhhHHHHHHHHhcchHHHHHHHHH
Confidence 77776666552 122456666666677777777777777776543 332 235666666677777777777766666
Q ss_pred HhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHH
Q 011323 261 HKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGII 340 (488)
Q Consensus 261 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 340 (488)
.... +....++..+...|...|..+.|+..+++.++..+. =...|+.+..++-..|++.+|...+.+..... +-...
T Consensus 279 l~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~had 355 (966)
T KOG4626|consen 279 LNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHAD 355 (966)
T ss_pred HhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHH
Confidence 5543 334556666666666777777777777766664332 23456667777777777777777776666653 23455
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHH
Q 011323 341 SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN-TITYSILLVAC 419 (488)
Q Consensus 341 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~ 419 (488)
..+.|...|...|.++.|..+|....+.. +--...++.|...|-+.|++++|+..+++.++ +.|+ ...|+.+...|
T Consensus 356 am~NLgni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ 432 (966)
T KOG4626|consen 356 AMNNLGNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTY 432 (966)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHH
Confidence 66666777777777777777776665432 12234556666666677777777777776665 4565 45666666666
Q ss_pred hhcCCHHHHHHHHHHHHHcCCCCcHH-HHHHHHHHHhh--cHHHHHHHHHHhhhccCCCCc
Q 011323 420 ERKDDVEVGLMLLSQAKEDGVIPNLV-MFKCIIGMCSR--RYEKARTLNEHVLSFNSGRPQ 477 (488)
Q Consensus 420 ~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~--~~~~a~~~~~~~~~~~~~~~~ 477 (488)
-..|+.+.|.+.+.+++. +.|... ..+.|...+.. +..+|...++..+.++|.-|+
T Consensus 433 ke~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpd 491 (966)
T KOG4626|consen 433 KEMGDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPD 491 (966)
T ss_pred HHhhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCch
Confidence 667777777777666665 444443 23333344432 566666666666666666555
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.3e-20 Score=194.49 Aligned_cols=421 Identities=13% Similarity=0.064 Sum_probs=252.6
Q ss_pred cCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCCC-CC----------------------HHH
Q 011323 38 QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN-PT----------------------LST 94 (488)
Q Consensus 38 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~----------------------~~~ 94 (488)
.|+.++|++.++++.+.. |.+...+..+..++...|+.++|++.++++.. +. ...
T Consensus 160 ~g~~~~A~~~L~~ll~~~--P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~ 237 (1157)
T PRK11447 160 PAQRPEAINQLQRLNADY--PGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAA 237 (1157)
T ss_pred CccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHH
Confidence 467777777777777665 56666666666777667777777776665421 00 000
Q ss_pred HH----------------------------------HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 011323 95 FN----------------------------------MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140 (488)
Q Consensus 95 ~~----------------------------------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 140 (488)
+. .....+...|++++|+..|++..+.. +.+...+..+..++.+.
T Consensus 238 l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~ 316 (1157)
T PRK11447 238 LQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQ 316 (1157)
T ss_pred HHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 00 11223455677777777777777653 44666777777777777
Q ss_pred CCHhHHHHHHHHHHHcCCCC-CHHHHH------------HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHH
Q 011323 141 GKVDAMFEVFHEMVNAGIEP-NVHTYG------------ALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITAC 207 (488)
Q Consensus 141 ~~~~~a~~~~~~~~~~~~~~-~~~~~~------------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 207 (488)
|++++|+..|++..+..... ....|. .....+.+.|++++|...|++..... +.+...+..+..++
T Consensus 317 g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~ 395 (1157)
T PRK11447 317 GDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVA 395 (1157)
T ss_pred CCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 77777777777776653211 111111 12334566777777777777777653 33455666677777
Q ss_pred HccCCHHHHHHHHHHHhhCCCCCCCC-cchHHHHHH------------------------------------------HH
Q 011323 208 GQSGAVDRAFDVLAEMNAEVHPVDPD-HITIGALMK------------------------------------------AC 244 (488)
Q Consensus 208 ~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~~l~~------------------------------------------~~ 244 (488)
...|++++|++.|++.... .|+ ...+..+.. .+
T Consensus 396 ~~~g~~~eA~~~y~~aL~~----~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~ 471 (1157)
T PRK11447 396 MARKDYAAAERYYQQALRM----DPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEAL 471 (1157)
T ss_pred HHCCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 7777777777777777653 222 122222222 23
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 011323 245 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAF 324 (488)
Q Consensus 245 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 324 (488)
...|++++|.+.++...+.. +.++..+..+...|.+.|++++|...++++.+.... +...+..+...+...++.++|.
T Consensus 472 ~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al 549 (1157)
T PRK11447 472 ENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAAL 549 (1157)
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHH
Confidence 33455555555555554443 334444445555555555555555555555443221 2222333333344455555555
Q ss_pred HHHHHHHHCCCCccH---------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHH
Q 011323 325 EILQEAKNQGISVGI---------ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTME 395 (488)
Q Consensus 325 ~~~~~~~~~~~~~~~---------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 395 (488)
..++.+......++. ..+......+...|+.++|..+++. .+.+...+..+...+.+.|++++|+.
T Consensus 550 ~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~ 624 (1157)
T PRK11447 550 AHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARA 624 (1157)
T ss_pred HHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHH
Confidence 555443322111111 1122334556667777777777661 24566677788899999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcH-HHHHHHHHHHhh--cHHHHHHHHHHhhhcc
Q 011323 396 VLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL-VMFKCIIGMCSR--RYEKARTLNEHVLSFN 472 (488)
Q Consensus 396 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~--~~~~a~~~~~~~~~~~ 472 (488)
.+++..+.. +.+...+..++..+...|++++|++.++.+.+. .|+. ..+..+..++.. ++++|.++++.+....
T Consensus 625 ~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 625 AYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPAT--ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence 999998852 446888999999999999999999999988764 3333 233334444433 8999999999988766
Q ss_pred CCCC
Q 011323 473 SGRP 476 (488)
Q Consensus 473 ~~~~ 476 (488)
+.++
T Consensus 702 ~~~~ 705 (1157)
T PRK11447 702 KSQP 705 (1157)
T ss_pred ccCC
Confidence 5544
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.4e-21 Score=181.88 Aligned_cols=302 Identities=13% Similarity=0.109 Sum_probs=190.2
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCC
Q 011323 101 VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN---VHTYGALIDGCAKAGQ 177 (488)
Q Consensus 101 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~ 177 (488)
.+...|++++|+..|+++.+.+ +.+..++..+...+...|++++|.++++.+...+..++ ..++..+...|...|+
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 3456678888888888887764 44566777788888888888888888887776432211 2456777778888888
Q ss_pred HHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCC---cchHHHHHHHHHhcCCHHHHH
Q 011323 178 VAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD---HITIGALMKACANAGQVDRAR 254 (488)
Q Consensus 178 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~ 254 (488)
+++|..+|+++.+.. +++..++..++..+...|++++|.+.++.+...... .+. ...+..+...+...|++++|.
T Consensus 123 ~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~la~~~~~~~~~~~A~ 200 (389)
T PRK11788 123 LDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGD-SLRVEIAHFYCELAQQALARGDLDAAR 200 (389)
T ss_pred HHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCC-cchHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 888888888887653 445667777778888888888888888877654211 111 112334555566667777777
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 011323 255 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334 (488)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 334 (488)
..++++.+.. +.+...+..+...+.+.|++++|.++++++.+.+......++..++.+|...|++++|...++.+.+..
T Consensus 201 ~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 279 (389)
T PRK11788 201 ALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY 279 (389)
T ss_pred HHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 7777666543 334455666666666667777777776666654332223445566666666666666666666666543
Q ss_pred CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc---CCChhHHHHHHHHHHhCCCCCCHH
Q 011323 335 ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD---GDQLPKTMEVLSDMKSLGLCPNTI 410 (488)
Q Consensus 335 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~p~~~ 410 (488)
|+...+..++..+.+.|++++|..+++++.+. .|+...+..++..+.. .|+.++++.++++|.+.++.|++.
T Consensus 280 --p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 280 --PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred --CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 33344456666666666666666666665543 3555566655555443 345666666666666555554444
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.4e-21 Score=179.39 Aligned_cols=303 Identities=17% Similarity=0.110 Sum_probs=246.9
Q ss_pred HHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HhHHHHHHHHHHcc
Q 011323 134 ITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD---RVVFNALITACGQS 210 (488)
Q Consensus 134 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~ 210 (488)
...+...|++++|...|.++.+.+ +.+..++..+...+...|++++|..+++.+...+..++ ...+..+...|...
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 445678899999999999999874 34567899999999999999999999999987542221 24677888999999
Q ss_pred CCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHccCChH
Q 011323 211 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT----PEVYTIAINCCSQTGDWE 286 (488)
Q Consensus 211 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~ 286 (488)
|++++|..+|+++... .+.+..++..++..+.+.|++++|.+.++.+.+.+..+. ...+..+...+.+.|+++
T Consensus 121 g~~~~A~~~~~~~l~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 197 (389)
T PRK11788 121 GLLDRAEELFLQLVDE---GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLD 197 (389)
T ss_pred CCHHHHHHHHHHHHcC---CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHH
Confidence 9999999999999864 234566888899999999999999999999887653322 124556777888999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011323 287 FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 366 (488)
Q Consensus 287 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 366 (488)
+|...++++.+.... +...+..+...+.+.|++++|.++++++.+.+......+++.++.+|...|++++|...++++.
T Consensus 198 ~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 276 (389)
T PRK11788 198 AARALLKKALAADPQ-CVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRAL 276 (389)
T ss_pred HHHHHHHHHHhHCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999999876433 5667788889999999999999999999876533335678889999999999999999999988
Q ss_pred hCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhh---cCCHHHHHHHHHHHHHcCCCCc
Q 011323 367 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER---KDDVEVGLMLLSQAKEDGVIPN 443 (488)
Q Consensus 367 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~ 443 (488)
+.. |+...+..++..+.+.|++++|..+++++.+. .|+..++..++..+.. .|+.+++..+++++.+.++.|+
T Consensus 277 ~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 352 (389)
T PRK11788 277 EEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRK 352 (389)
T ss_pred HhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCC
Confidence 763 66667788899999999999999999998874 6888888888877664 5688999999999998766666
Q ss_pred HH
Q 011323 444 LV 445 (488)
Q Consensus 444 ~~ 445 (488)
..
T Consensus 353 p~ 354 (389)
T PRK11788 353 PR 354 (389)
T ss_pred CC
Confidence 54
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.6e-21 Score=170.87 Aligned_cols=388 Identities=15% Similarity=0.151 Sum_probs=322.4
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHhcCChhHHHH
Q 011323 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQ 113 (488)
Q Consensus 37 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~ 113 (488)
+-.+++...+--....+.. |.....+..++.+++..|++++|+.+++.+. +..+..|-.+..++...|+.+.|.+
T Consensus 94 q~~r~d~s~a~~~~a~r~~--~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~ 171 (966)
T KOG4626|consen 94 QGSRLDKSSAGSLLAIRKN--PQGAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQ 171 (966)
T ss_pred cccchhhhhhhhhhhhhcc--chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHH
Confidence 4445565555555555554 7788888999999999999999999999775 3456789999999999999999999
Q ss_pred HHHHHHHcCCCCCHH-HHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011323 114 VLRLVQEAGLKADCK-LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN-VHTYGALIDGCAKAGQVAKAFGAYGIMRSK 191 (488)
Q Consensus 114 ~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 191 (488)
.|....+. .|+.. ....+...+...|+.++|...+.+.++. .|. ...|+.|...+-.+|+...|++.|++....
T Consensus 172 ~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl 247 (966)
T KOG4626|consen 172 CFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKACYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL 247 (966)
T ss_pred HHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHHHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhcC
Confidence 99988875 45544 4445556666789999999999888876 444 467889999999999999999999998876
Q ss_pred CCCCC-HhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH
Q 011323 192 NVKPD-RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD-HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 269 (488)
Q Consensus 192 ~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 269 (488)
.|+ ...|..|...|...+.+++|...+.+.... .|+ ...+..+...|-..|+++.|+..+++..+.. +.-+
T Consensus 248 --dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l----rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~ 320 (966)
T KOG4626|consen 248 --DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL----RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFP 320 (966)
T ss_pred --CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc----CCcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCch
Confidence 455 678889999999999999999999888753 454 4567777788899999999999999998875 4457
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHH
Q 011323 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 349 (488)
Q Consensus 270 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 349 (488)
..|+.+.+++...|+..+|.+.+.+....... -....+.|...|...|.++.|..+|....+.. +--....+.|...|
T Consensus 321 ~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~-hadam~NLgni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~ 398 (966)
T KOG4626|consen 321 DAYNNLANALKDKGSVTEAVDCYNKALRLCPN-HADAMNNLGNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIY 398 (966)
T ss_pred HHHhHHHHHHHhccchHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHH
Confidence 89999999999999999999999998886443 55678899999999999999999999988753 22356789999999
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhhcCCHHH
Q 011323 350 SNAKNWQKALELYEHMKSIKLKPT-VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN-TITYSILLVACERKDDVEV 427 (488)
Q Consensus 350 ~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~ 427 (488)
-++|++++|+..+++.++. .|+ ...|+.+...|-..|+.+.|++.+.+.+. +.|. ...++.|...|..+|+..+
T Consensus 399 kqqgnl~~Ai~~YkealrI--~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~ 474 (966)
T KOG4626|consen 399 KQQGNLDDAIMCYKEALRI--KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPE 474 (966)
T ss_pred HhcccHHHHHHHHHHHHhc--CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHH
Confidence 9999999999999999875 455 57899999999999999999999999887 4676 5788999999999999999
Q ss_pred HHHHHHHHHHcCCCCcHH
Q 011323 428 GLMLLSQAKEDGVIPNLV 445 (488)
Q Consensus 428 a~~~~~~~~~~~~~~~~~ 445 (488)
|+.-++...+. +||..
T Consensus 475 AI~sY~~aLkl--kPDfp 490 (966)
T KOG4626|consen 475 AIQSYRTALKL--KPDFP 490 (966)
T ss_pred HHHHHHHHHcc--CCCCc
Confidence 99999999884 44443
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-19 Score=177.34 Aligned_cols=326 Identities=11% Similarity=0.037 Sum_probs=156.3
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 011323 99 MSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQV 178 (488)
Q Consensus 99 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 178 (488)
+..+.+.|++++|+.+++...... +-+...+..++.+....|++++|.+.++++.... +.+...+..+...+...|++
T Consensus 49 ~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~ 126 (656)
T PRK15174 49 AIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQY 126 (656)
T ss_pred HHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCH
Confidence 344445555555555555554432 2233334444444444555555555555555442 22334444555555555555
Q ss_pred HHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcc-hHHHHHHHHHhcCCHHHHHHHH
Q 011323 179 AKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI-TIGALMKACANAGQVDRAREVY 257 (488)
Q Consensus 179 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~ 257 (488)
++|...+++..... +.+...+..+...+...|++++|...++.+... .|+.. .+..+ ..+...|++++|...+
T Consensus 127 ~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~----~P~~~~a~~~~-~~l~~~g~~~eA~~~~ 200 (656)
T PRK15174 127 ATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQE----VPPRGDMIATC-LSFLNKSRLPEDHDLA 200 (656)
T ss_pred HHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh----CCCCHHHHHHH-HHHHHcCCHHHHHHHH
Confidence 55555555555432 223444444555555555555555555544332 11111 11111 2244455555555555
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHHC
Q 011323 258 KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA----AFEILQEAKNQ 333 (488)
Q Consensus 258 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----a~~~~~~~~~~ 333 (488)
+.+.+....++......+...+...|++++|...+++..+.... +...+..+...+...|++++ |...+++..+.
T Consensus 201 ~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l 279 (656)
T PRK15174 201 RALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF 279 (656)
T ss_pred HHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh
Confidence 55444332222223333344455555555555555555544322 34444555555555555553 45555555554
Q ss_pred CCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCH-HHH
Q 011323 334 GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT-ITY 412 (488)
Q Consensus 334 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~ 412 (488)
. +.+...+..+...+...|++++|...+++..+.. +.+...+..+..++.+.|++++|+..++++.+. .|+. ..+
T Consensus 280 ~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~ 355 (656)
T PRK15174 280 N-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTSKWN 355 (656)
T ss_pred C-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchHHH
Confidence 3 2244555555555555555555555555555443 233444445555555555555555555555542 2332 222
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHH
Q 011323 413 SILLVACERKDDVEVGLMLLSQAKE 437 (488)
Q Consensus 413 ~~l~~~~~~~g~~~~a~~~~~~~~~ 437 (488)
..+..++...|++++|...|+++.+
T Consensus 356 ~~~a~al~~~G~~deA~~~l~~al~ 380 (656)
T PRK15174 356 RYAAAALLQAGKTSEAESVFEHYIQ 380 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2234445555555555555555554
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.9e-19 Score=176.30 Aligned_cols=395 Identities=12% Similarity=0.025 Sum_probs=286.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHhcCCh
Q 011323 32 YNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDS 108 (488)
Q Consensus 32 ~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~ 108 (488)
-+.+.+.|++++|+..|++.++.. |. ...+..++..+...|++++|++.++.+. +.+..+|..+..++...|++
T Consensus 134 G~~~~~~~~~~~Ai~~y~~al~~~--p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~ 210 (615)
T TIGR00990 134 GNKAYRNKDFNKAIKLYSKAIECK--PD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKY 210 (615)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC--Cc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCH
Confidence 355668999999999999998875 43 5677788888899999999999998765 45667888899999999999
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHc---------------------------CCCCC
Q 011323 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA---------------------------GIEPN 161 (488)
Q Consensus 109 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------------------------~~~~~ 161 (488)
++|+.-|......+ ..+......++..+........+...++.-... ...+.
T Consensus 211 ~eA~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (615)
T TIGR00990 211 ADALLDLTASCIID-GFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEE 289 (615)
T ss_pred HHHHHHHHHHHHhC-CCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccc
Confidence 99998887665443 112111111111111110011111111100000 00000
Q ss_pred -HHHHHHHHHH---HHhcCCHHHHHHHHHHHHhCC-CCC-CHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCC-c
Q 011323 162 -VHTYGALIDG---CAKAGQVAKAFGAYGIMRSKN-VKP-DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD-H 234 (488)
Q Consensus 162 -~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~-~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~ 234 (488)
...+..+... ....+++++|.+.|+.....+ ..| ....+..+...+...|++++|+..+++.... .|+ .
T Consensus 290 ~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l----~P~~~ 365 (615)
T TIGR00990 290 TGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL----DPRVT 365 (615)
T ss_pred cccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCcH
Confidence 0001111110 012367899999999998764 223 4566788888889999999999999998864 344 4
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 011323 235 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 314 (488)
Q Consensus 235 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 314 (488)
..|..+...+...|++++|...|+.+.+.. +.++.++..+...+...|++++|...|++..+..+. +...+..+..++
T Consensus 366 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~~~~~la~~~ 443 (615)
T TIGR00990 366 QSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FIFSHIQLGVTQ 443 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CHHHHHHHHHHH
Confidence 477788888999999999999999998875 567889999999999999999999999999887543 667788888899
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH------HHHHHHHHHHcCC
Q 011323 315 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS------TMNALITALCDGD 388 (488)
Q Consensus 315 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~~ 388 (488)
.+.|++++|+..++...+.. +.++..++.+...+...|++++|...|++..+.....+.. .++.....+...|
T Consensus 444 ~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~ 522 (615)
T TIGR00990 444 YKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQ 522 (615)
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhh
Confidence 99999999999999998764 4568889999999999999999999999988754221111 1122222344579
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHc
Q 011323 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 438 (488)
Q Consensus 389 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 438 (488)
++++|.+++++..... +.+...+..+...+...|++++|+++|+++.+.
T Consensus 523 ~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 523 DFIEAENLCEKALIID-PECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred hHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 9999999999988753 334567888999999999999999999998875
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.7e-19 Score=175.85 Aligned_cols=328 Identities=11% Similarity=0.002 Sum_probs=241.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHhcCC
Q 011323 31 SYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKD 107 (488)
Q Consensus 31 ~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~ 107 (488)
.+..+.++|++++|+.+++.++... |.+...+..++......|++++|...|+++. +.+...+..+...+...|+
T Consensus 48 ~~~~~~~~g~~~~A~~l~~~~l~~~--p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~ 125 (656)
T PRK15174 48 FAIACLRKDETDVGLTLLSDRVLTA--KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQ 125 (656)
T ss_pred HHHHHHhcCCcchhHHHhHHHHHhC--CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC
Confidence 3445557888888888888888776 6666666666677777888888888888764 4556677778888888888
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011323 108 SEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGI 187 (488)
Q Consensus 108 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 187 (488)
+++|+..++...+.. +.+...+..+...+...|++++|...++.+..... .+...+..+ ..+...|++++|...++.
T Consensus 126 ~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P-~~~~a~~~~-~~l~~~g~~~eA~~~~~~ 202 (656)
T PRK15174 126 YATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVP-PRGDMIATC-LSFLNKSRLPEDHDLARA 202 (656)
T ss_pred HHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCC-CCHHHHHHH-HHHHHcCCHHHHHHHHHH
Confidence 888888888888753 44667788888888888888888888887766532 233333333 346778888888888888
Q ss_pred HHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCCHHH----HHHHHHHHHhc
Q 011323 188 MRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR----AREVYKMIHKY 263 (488)
Q Consensus 188 ~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~ 263 (488)
+......++...+..+..++...|++++|...+++..... +.+...+..+...+...|++++ |...++.+...
T Consensus 203 ~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~---p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l 279 (656)
T PRK15174 203 LLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG---LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF 279 (656)
T ss_pred HHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh
Confidence 7765423344444555677788888888888888887642 2234566677788888888875 78888888776
Q ss_pred CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHH
Q 011323 264 NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYS 343 (488)
Q Consensus 264 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 343 (488)
. +.+...+..+...+.+.|++++|...+++..+..+. +...+..+..++.+.|++++|...++.+...+. .+...+.
T Consensus 280 ~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P-~~~~~~~ 356 (656)
T PRK15174 280 N-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLAREKG-VTSKWNR 356 (656)
T ss_pred C-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-cchHHHH
Confidence 5 556778888888888888888888888888876543 556677778888888888888888888887542 2233444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCC
Q 011323 344 SLMGACSNAKNWQKALELYEHMKSIK 369 (488)
Q Consensus 344 ~l~~~~~~~g~~~~a~~~~~~~~~~~ 369 (488)
.+..++...|+.++|...|++..+..
T Consensus 357 ~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 357 YAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 45667788888888888888877653
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.8e-19 Score=179.57 Aligned_cols=405 Identities=10% Similarity=0.010 Sum_probs=307.4
Q ss_pred hhHHHHHHHH-hcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHH
Q 011323 27 EQLHSYNRLI-RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVC 102 (488)
Q Consensus 27 ~~~~~~~~l~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~ 102 (488)
..+.-|..+. ..|+.++|++++.+..... |.+...+..++..+...|++++|.++|+++. +.+...+..+...+
T Consensus 16 ~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~--~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l 93 (765)
T PRK10049 16 NQIADWLQIALWAGQDAEVITVYNRYRVHM--QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTL 93 (765)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3455554444 8999999999999998744 5667678888899999999999999999853 55677888888999
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 011323 103 ASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAF 182 (488)
Q Consensus 103 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 182 (488)
...|++++|+..++...+.. +.+.. +..+..++...|+.++|+..++++.+.. +.+...+..+..++...+..+.|+
T Consensus 94 ~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al 170 (765)
T PRK10049 94 ADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPAL 170 (765)
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHH
Confidence 99999999999999998773 55666 8889999999999999999999999874 335666777888888999999999
Q ss_pred HHHHHHHhCCCCCCH------hHHHHHHHHHH-----ccCCH---HHHHHHHHHHhhCCCCCCCCcc-hHH----HHHHH
Q 011323 183 GAYGIMRSKNVKPDR------VVFNALITACG-----QSGAV---DRAFDVLAEMNAEVHPVDPDHI-TIG----ALMKA 243 (488)
Q Consensus 183 ~~~~~~~~~~~~~~~------~~~~~ll~~~~-----~~g~~---~~a~~~~~~~~~~~~~~~~~~~-~~~----~l~~~ 243 (488)
..++.... .|+. .....+++... ..+++ ++|++.++.+.... +..|+.. .+. ..+..
T Consensus 171 ~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~-~~~p~~~~~~~~a~~d~l~~ 246 (765)
T PRK10049 171 GAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALW-HDNPDATADYQRARIDRLGA 246 (765)
T ss_pred HHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhc-ccCCccchHHHHHHHHHHHH
Confidence 99886654 2221 11222233222 12234 77888888887542 1223321 111 11334
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCH
Q 011323 244 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP---DEVFLSALIDFAGHAGKV 320 (488)
Q Consensus 244 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~ 320 (488)
+...|++++|...|+.+.+.+.+........+...|...|++++|+..|+++.+..... .......+..++...|++
T Consensus 247 Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~ 326 (765)
T PRK10049 247 LLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENY 326 (765)
T ss_pred HHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccH
Confidence 56779999999999999887532122233335778999999999999999987754321 134566677788999999
Q ss_pred HHHHHHHHHHHHCCC-----------Ccc---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 011323 321 EAAFEILQEAKNQGI-----------SVG---IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386 (488)
Q Consensus 321 ~~a~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 386 (488)
++|...++.+..... .|+ ...+..+...+...|++++|+++++++.... +.+...+..+...+..
T Consensus 327 ~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~ 405 (765)
T PRK10049 327 PGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQA 405 (765)
T ss_pred HHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 999999999887531 122 2345667788899999999999999998765 5678889999999999
Q ss_pred CCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHH
Q 011323 387 GDQLPKTMEVLSDMKSLGLCPN-TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 445 (488)
Q Consensus 387 ~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 445 (488)
.|++++|++.+++..+. .|+ ...+...+..+...|++++|..+++++++. .|+..
T Consensus 406 ~g~~~~A~~~l~~al~l--~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~--~Pd~~ 461 (765)
T PRK10049 406 RGWPRAAENELKKAEVL--EPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR--EPQDP 461 (765)
T ss_pred cCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCH
Confidence 99999999999999885 454 677778888999999999999999999984 45554
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.6e-18 Score=168.08 Aligned_cols=444 Identities=13% Similarity=0.102 Sum_probs=311.5
Q ss_pred ccCCCchhHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCchH-HHHHHHHHHHhhhHHHHHHHHHhhhCCCCCHH-HHHHH
Q 011323 21 YAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDK-VYHARFFNVCKSQKAIKEAFRFFKLVPNPTLS-TFNML 98 (488)
Q Consensus 21 ~~~~~~~~~~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~l 98 (488)
.|..+......+-...++|+++.|++.|+++++.. |.+. .++ -++.++...|+.++|+..+++...|+.. .+..+
T Consensus 30 ~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~ll 106 (822)
T PRK14574 30 NPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLA 106 (822)
T ss_pred CccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHH
Confidence 34444455555555669999999999999999887 5553 333 5666677779999999999998765433 33333
Q ss_pred --HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 011323 99 --MSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG 176 (488)
Q Consensus 99 --~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 176 (488)
...+...|++++|+++++.+.+.. +.+...+..++..+...++.++|++.++++... .|+...+..++..+...+
T Consensus 107 alA~ly~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~ 183 (822)
T PRK14574 107 SAARAYRNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATD 183 (822)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcc
Confidence 557888899999999999999875 556778888889999999999999999999876 666666655544554566
Q ss_pred CHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchH------HHHHHHH---H--
Q 011323 177 QVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI------GALMKAC---A-- 245 (488)
Q Consensus 177 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~------~~l~~~~---~-- 245 (488)
+..+|++.++++.+.. +-+...+..+..++.+.|-...|.++..+-..- +.+....+ ..+++.- .
T Consensus 184 ~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~---f~~~~~~~l~~~~~a~~vr~a~~~~~~ 259 (822)
T PRK14574 184 RNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL---VSAEHYRQLERDAAAEQVRMAVLPTRS 259 (822)
T ss_pred hHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc---cCHHHHHHHHHHHHHHHHhhccccccc
Confidence 6766999999999884 446778888889999999998888877663311 11111000 1111100 0
Q ss_pred hcCC---HHHHHHHHHHHHhcC-CCCCH-----HHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 011323 246 NAGQ---VDRAREVYKMIHKYN-IKGTP-----EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 316 (488)
Q Consensus 246 ~~~~---~~~a~~~~~~~~~~~-~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 316 (488)
...+ .+.|+.-++.+...- ..|.. ....-.+-++...+++.++++.++.+...+......+-..+.++|..
T Consensus 260 ~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~ 339 (822)
T PRK14574 260 ETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYID 339 (822)
T ss_pred chhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHh
Confidence 1112 344555555554421 11221 12223455677888999999999999988765455678888999999
Q ss_pred cCCHHHHHHHHHHHHHCC-----CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----------CCC--H-HHH
Q 011323 317 AGKVEAAFEILQEAKNQG-----ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL-----------KPT--V-STM 377 (488)
Q Consensus 317 ~g~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----------~~~--~-~~~ 377 (488)
.+++++|..+++.+.... ..++......|.-+|...+++++|..+++.+.+... .|| - ..+
T Consensus 340 ~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~ 419 (822)
T PRK14574 340 RRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQ 419 (822)
T ss_pred cCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHH
Confidence 999999999999886643 123444457788888999999999999998876321 122 1 223
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHH-HHHHHHhh
Q 011323 378 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK-CIIGMCSR 456 (488)
Q Consensus 378 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~li~~~~~ 456 (488)
..++..+...|+..+|.+.++++... -|-|......+...+...|.+.+|++.++.+... .|+..... ........
T Consensus 420 ~l~a~~~~~~gdl~~Ae~~le~l~~~-aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l--~P~~~~~~~~~~~~al~ 496 (822)
T PRK14574 420 TLLVQSLVALNDLPTAQKKLEDLSST-APANQNLRIALASIYLARDLPRKAEQELKAVESL--APRSLILERAQAETAMA 496 (822)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh--CCccHHHHHHHHHHHHh
Confidence 44566778889999999999998775 3667888888889999999999999999776653 45544322 23333322
Q ss_pred --cHHHHHHHHHHhhhccCCCCc
Q 011323 457 --RYEKARTLNEHVLSFNSGRPQ 477 (488)
Q Consensus 457 --~~~~a~~~~~~~~~~~~~~~~ 477 (488)
++.+|..+.+.+....|.++.
T Consensus 497 l~e~~~A~~~~~~l~~~~Pe~~~ 519 (822)
T PRK14574 497 LQEWHQMELLTDDVISRSPEDIP 519 (822)
T ss_pred hhhHHHHHHHHHHHHhhCCCchh
Confidence 788888888888887777765
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.3e-18 Score=167.57 Aligned_cols=398 Identities=12% Similarity=-0.005 Sum_probs=285.1
Q ss_pred HHHHHHhhhHHHHHHHHHhhhCC--CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 011323 66 RFFNVCKSQKAIKEAFRFFKLVP--NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143 (488)
Q Consensus 66 ~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 143 (488)
..+..+...|++++|+..|+++. .|+...|..+..+|.+.|++++|++.++...+.. +.+...+..+..++...|++
T Consensus 132 ~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~lg~~ 210 (615)
T TIGR00990 132 EKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGLGKY 210 (615)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCH
Confidence 44566677899999999998865 4677788888889999999999999999988764 45677888899999999999
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---------------------------CCCCC
Q 011323 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK---------------------------NVKPD 196 (488)
Q Consensus 144 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------------------------~~~~~ 196 (488)
++|+..|......+...+... ..++..+........+...++.-... ...+.
T Consensus 211 ~eA~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (615)
T TIGR00990 211 ADALLDLTASCIIDGFRNEQS-AQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEE 289 (615)
T ss_pred HHHHHHHHHHHHhCCCccHHH-HHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccc
Confidence 999988877655431212211 11111111110111111111100000 00000
Q ss_pred H-hHHHHHHHH---HHccCCHHHHHHHHHHHhhCCCCCCC-CcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHH
Q 011323 197 R-VVFNALITA---CGQSGAVDRAFDVLAEMNAEVHPVDP-DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271 (488)
Q Consensus 197 ~-~~~~~ll~~---~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 271 (488)
. ..+..+... ....+++++|.+.|+...... ...| ....+..+...+...|++++|...++...... +.....
T Consensus 290 ~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~-~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~ 367 (615)
T TIGR00990 290 TGNGQLQLGLKSPESKADESYEEAARAFEKALDLG-KLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQS 367 (615)
T ss_pred cccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHH
Confidence 0 000111100 122367899999999987642 1223 34567777888889999999999999998865 455778
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHh
Q 011323 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 351 (488)
Q Consensus 272 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 351 (488)
|..+...+...|++++|...|++..+.... +..++..+...+...|++++|...|++..+.. +.+...+..+..++.+
T Consensus 368 ~~~la~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~ 445 (615)
T TIGR00990 368 YIKRASMNLELGDPDKAEEDFDKALKLNSE-DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYK 445 (615)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHH
Confidence 889999999999999999999999887543 67888999999999999999999999999875 4467778888999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCH-H-------HHHHHHHHHhhcC
Q 011323 352 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT-I-------TYSILLVACERKD 423 (488)
Q Consensus 352 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~-------~~~~l~~~~~~~g 423 (488)
.|++++|...|++..+.. +.+...|+.+...+...|++++|++.|++..+. .|+. . .+...+..+...|
T Consensus 446 ~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l--~p~~~~~~~~~~~l~~~a~~~~~~~~ 522 (615)
T TIGR00990 446 EGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL--EKETKPMYMNVLPLINKALALFQWKQ 522 (615)
T ss_pred CCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCccccccccHHHHHHHHHHHHHHhh
Confidence 999999999999988754 456788999999999999999999999998864 2321 1 1122223344579
Q ss_pred CHHHHHHHHHHHHHcCCCCcHH-HHHHHHHHHhh--cHHHHHHHHHHhhhccCC
Q 011323 424 DVEVGLMLLSQAKEDGVIPNLV-MFKCIIGMCSR--RYEKARTLNEHVLSFNSG 474 (488)
Q Consensus 424 ~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~--~~~~a~~~~~~~~~~~~~ 474 (488)
++++|.++++++.+.. |+.. .+..+...+.+ ++++|...++....+.+.
T Consensus 523 ~~~eA~~~~~kAl~l~--p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~ 574 (615)
T TIGR00990 523 DFIEAENLCEKALIID--PECDIAVATMAQLLLQQGDVDEALKLFERAAELART 574 (615)
T ss_pred hHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhcc
Confidence 9999999999988754 4443 56666666665 899999999888776554
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.4e-18 Score=173.21 Aligned_cols=417 Identities=13% Similarity=0.078 Sum_probs=306.0
Q ss_pred HHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 011323 45 IDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEA 121 (488)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 121 (488)
+..+++ .+.+ +.+.....=...+....|+.++|++++.... +.+...+..+...+...|++++|.++++...+.
T Consensus 2 ~~~~~~-~~~~--~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~ 78 (765)
T PRK10049 2 LSWLRQ-ALKS--ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL 78 (765)
T ss_pred chhhhh-hhcc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345555 3333 4444444445667777899999999998765 345557899999999999999999999998876
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHH
Q 011323 122 GLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201 (488)
Q Consensus 122 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 201 (488)
. +.+...+..+..++...|++++|...++++.+.. +.+.. +..+..++...|+.++|+..++++.+.. +.+...+.
T Consensus 79 ~-P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~ 154 (765)
T PRK10049 79 E-PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPT 154 (765)
T ss_pred C-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 4 5567788889999999999999999999998873 34556 8888999999999999999999999874 44566667
Q ss_pred HHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCc------chHHHHHHHHH-----hcCCH---HHHHHHHHHHHhc-CCC
Q 011323 202 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH------ITIGALMKACA-----NAGQV---DRAREVYKMIHKY-NIK 266 (488)
Q Consensus 202 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~------~~~~~l~~~~~-----~~~~~---~~a~~~~~~~~~~-~~~ 266 (488)
.+..++...|..++|++.++.... .|+. .....++.... ..+++ ++|++.++.+.+. ...
T Consensus 155 ~la~~l~~~~~~e~Al~~l~~~~~-----~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~ 229 (765)
T PRK10049 155 EYVQALRNNRLSAPALGAIDDANL-----TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDN 229 (765)
T ss_pred HHHHHHHHCCChHHHHHHHHhCCC-----CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccC
Confidence 788888889999999999987653 2221 01122222222 12233 6788888888754 112
Q ss_pred CCHH-HH----HHHHHHHHccCChHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc---
Q 011323 267 GTPE-VY----TIAINCCSQTGDWEFACSVYDDMTKKGVI-PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV--- 337 (488)
Q Consensus 267 ~~~~-~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--- 337 (488)
|+.. .+ ...+..+...|++++|+..|+.+.+.+.. |+. ....+..+|...|++++|+..|+.+.+.....
T Consensus 230 p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~ 308 (765)
T PRK10049 230 PDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADL 308 (765)
T ss_pred CccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCC
Confidence 2211 11 11133456779999999999999987643 332 22335778999999999999999988654211
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----------CCC---HHHHHHHHHHHHcCCChhHHHHHHHHHHhC
Q 011323 338 GIISYSSLMGACSNAKNWQKALELYEHMKSIKL-----------KPT---VSTMNALITALCDGDQLPKTMEVLSDMKSL 403 (488)
Q Consensus 338 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 403 (488)
.......+..++...|++++|...++.+.+... .|+ ...+..+...+...|+.++|+++++++...
T Consensus 309 ~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~ 388 (765)
T PRK10049 309 SDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN 388 (765)
T ss_pred ChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 134566677788999999999999999886531 123 234556777888999999999999999875
Q ss_pred CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHH-HHHHHHHHhh--cHHHHHHHHHHhhhccCCCCc
Q 011323 404 GLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVM-FKCIIGMCSR--RYEKARTLNEHVLSFNSGRPQ 477 (488)
Q Consensus 404 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~li~~~~~--~~~~a~~~~~~~~~~~~~~~~ 477 (488)
.+.+...+..+...+...|++++|++.++++.+. .|+... +......+.+ ++++|..+.+.+....|.++.
T Consensus 389 -~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l--~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~ 462 (765)
T PRK10049 389 -APGNQGLRIDYASVLQARGWPRAAENELKKAEVL--EPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPG 462 (765)
T ss_pred -CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHH
Confidence 3556788899999999999999999999999884 355432 2222233333 899999999999988887775
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.3e-17 Score=140.23 Aligned_cols=434 Identities=16% Similarity=0.189 Sum_probs=307.6
Q ss_pred cccCCCcccccccCCCchhHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHH---Hh--------------
Q 011323 10 QFPYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNV---CK-------------- 72 (488)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~---~~-------------- 72 (488)
+.|...+++-..|..+. +-...-.+|.+|++..+.-+|+.|...+. +-...+...+..+ +-
T Consensus 101 ~l~~F~P~~l~~~~~V~-~E~nL~kmIS~~EvKDs~ilY~~m~~e~~-~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~ 178 (625)
T KOG4422|consen 101 QLPVFRPRHLADPLQVE-TENNLLKMISSREVKDSCILYERMRSENV-DVSEKVQLELFRLVTYYNSSNVPFAEWEEFVG 178 (625)
T ss_pred cccccCchhcCCchhhc-chhHHHHHHhhcccchhHHHHHHHHhcCC-CCCHHHHHHHHHHHHhhcCCCCcchhHHHHhh
Confidence 44555555555555555 33334456689999999999999999885 3333322222222 11
Q ss_pred ------------hhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 011323 73 ------------SQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140 (488)
Q Consensus 73 ------------~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 140 (488)
+.|++ |. ++-...+.+..+|..+|.++|+-...+.|.+++++-.....+.+..+||.+|.+-+-.
T Consensus 179 ~~~~~E~S~~sWK~G~v--Ad-L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~ 255 (625)
T KOG4422|consen 179 MRNFGEDSTSSWKSGAV--AD-LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS 255 (625)
T ss_pred ccccccccccccccccH--HH-HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh
Confidence 12222 22 3333445677899999999999999999999999998877789999999999876544
Q ss_pred CCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHH-
Q 011323 141 GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAK----AFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDR- 215 (488)
Q Consensus 141 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~- 215 (488)
.+ .+++.+|....+.||..|+|+++.+..+.|+++. |.+++.+|++.|+.|+..+|..+|..+.+.++..+
T Consensus 256 ~~----K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~ 331 (625)
T KOG4422|consen 256 VG----KKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKV 331 (625)
T ss_pred cc----HHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhh
Confidence 33 7899999999999999999999999999998764 56788899999999999999999999998887643
Q ss_pred HHHHHHHHhhCC--CCC---CC-CcchHHHHHHHHHhcCCHHHHHHHHHHHHhcC----CCCC---HHHHHHHHHHHHcc
Q 011323 216 AFDVLAEMNAEV--HPV---DP-DHITIGALMKACANAGQVDRAREVYKMIHKYN----IKGT---PEVYTIAINCCSQT 282 (488)
Q Consensus 216 a~~~~~~~~~~~--~~~---~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~ 282 (488)
+..++.++...- ..+ .| |...|...|..|.+..+.+.|.++...+.... +.|+ ..-|..+....++.
T Consensus 332 as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~ 411 (625)
T KOG4422|consen 332 ASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQM 411 (625)
T ss_pred hHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHH
Confidence 445555554321 112 22 34567888999999999999998887665431 2222 12356677788888
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcC-C-------
Q 011323 283 GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK-N------- 354 (488)
Q Consensus 283 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~------- 354 (488)
...+.-...|+.|.-.-.-|+..+...++.+..-.|.++-..+++..++..|.........-++..+++.+ .
T Consensus 412 es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~ 491 (625)
T KOG4422|consen 412 ESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPERE 491 (625)
T ss_pred HHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHH
Confidence 99999999999999888888999999999999999999999999999888775544444444555555443 1
Q ss_pred -HHH-----HHHHH-------HHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCC----CCCCHHHHHHHHH
Q 011323 355 -WQK-----ALELY-------EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG----LCPNTITYSILLV 417 (488)
Q Consensus 355 -~~~-----a~~~~-------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~p~~~~~~~l~~ 417 (488)
+.. |..++ .++.+. .......+.+.-.+.+.|+.++|.+++.-+.+.+ ..|......-++.
T Consensus 492 Ql~~~~ak~aad~~e~~e~~~~R~r~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d 569 (625)
T KOG4422|consen 492 QLQVAFAKCAADIKEAYESQPIRQRAQ--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMD 569 (625)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHhc--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHH
Confidence 111 11111 122222 3455667777778889999999999999886543 2233444556777
Q ss_pred HHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 011323 418 ACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 454 (488)
Q Consensus 418 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 454 (488)
+..+.++...|...++-|...+...-....+-+...|
T Consensus 570 ~a~~~~spsqA~~~lQ~a~~~n~~~~E~La~RI~e~f 606 (625)
T KOG4422|consen 570 SAKVSNSPSQAIEVLQLASAFNLPICEGLAQRIMEDF 606 (625)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCchhhhHHHHHHHHhc
Confidence 7788889999999998887765544333334444443
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.5e-16 Score=159.08 Aligned_cols=179 Identities=12% Similarity=0.005 Sum_probs=111.9
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCCC--CCHHHHHHHHHHHHhcCChhHHHHH
Q 011323 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--PTLSTFNMLMSVCASSKDSEGAFQV 114 (488)
Q Consensus 37 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~ 114 (488)
..|++++|+..|+++.+.+ |.+...+..+..++...|+.++|+..+++..+ |+...|..++..+ +++.+|..+
T Consensus 56 ~~Gd~~~A~~~l~~Al~~d--P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~~~ 130 (987)
T PRK09782 56 KNNDEATAIREFEYIHQQV--PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSVTT 130 (987)
T ss_pred hCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHHHH
Confidence 4699999999999999887 77788888899999999999999999988753 3333333333222 778888888
Q ss_pred HHHHHHcCCCCCHHHHHHHHHH--------HHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHH-HHHHHhcCCHHHHHHHH
Q 011323 115 LRLVQEAGLKADCKLYTTLITT--------CAKSGKVDAMFEVFHEMVNAGIEPNVHTYGAL-IDGCAKAGQVAKAFGAY 185 (488)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~l~~~--------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~ 185 (488)
++++.+.. +-+..++..+... |.+. ++|.+.++ .......|+..+.... .+.|...++++.|++++
T Consensus 131 ye~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL 205 (987)
T PRK09782 131 VEELLAQQ-KACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLY 205 (987)
T ss_pred HHHHHHhC-CCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 88887664 3344444444443 3333 33333333 2222122233333322 55555555555555555
Q ss_pred HHHHhCC------------------------------CCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhh
Q 011323 186 GIMRSKN------------------------------VKPDRVVFNALITACGQSGAVDRAFDVLAEMNA 225 (488)
Q Consensus 186 ~~~~~~~------------------------------~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 225 (488)
.++.+.+ ++.+...+..+...+.+.|+.++|.++++++..
T Consensus 206 ~~L~k~~pl~~~~~~~L~~ay~q~l~~~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~ 275 (987)
T PRK09782 206 NEARQQNTLSAAERRQWFDVLLAGQLDDRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKP 275 (987)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHhhCHHHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcc
Confidence 5554432 123455566777778888888888888888754
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.2e-15 Score=149.67 Aligned_cols=435 Identities=14% Similarity=0.046 Sum_probs=277.1
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhh-hHHHHHHHHHhhhCCCCCHHHHHHHHHHHHhcC
Q 011323 28 QLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS-QKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSK 106 (488)
Q Consensus 28 ~~~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~ 106 (488)
.+.....+++.|++++|++++..+.+.+ +.+......+..++.. .++ +++..+++...+.++..+..+...+.+.|
T Consensus 185 ~L~~~rlY~~l~dw~~Ai~lL~~L~k~~--pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G 261 (987)
T PRK09782 185 RTDLLQRAIYLKQWSQADTLYNEARQQN--TLSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRG 261 (987)
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCC
Confidence 4444677789999999999999999998 5566656666666666 355 88888877655678899999999999999
Q ss_pred ChhHHHHHHHHHHHcCCC-CCHHHHH------------------------------HHHHHHHHcCCHhHHHHHHH----
Q 011323 107 DSEGAFQVLRLVQEAGLK-ADCKLYT------------------------------TLITTCAKSGKVDAMFEVFH---- 151 (488)
Q Consensus 107 ~~~~a~~~~~~~~~~~~~-~~~~~~~------------------------------~l~~~~~~~~~~~~a~~~~~---- 151 (488)
+.++|.++++.+...-.. |...++. .++..+.+.++++.+.++..
T Consensus 262 ~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (987)
T PRK09782 262 EKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPA 341 (987)
T ss_pred CHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCc
Confidence 999999999887643211 2222221 12444555555555444421
Q ss_pred -------------------------HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-C-CCCCHhHHHHHH
Q 011323 152 -------------------------EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK-N-VKPDRVVFNALI 204 (488)
Q Consensus 152 -------------------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~-~~~~~~~~~~ll 204 (488)
.|.+.. +-+....-.+.-.....|+.++|.++|+..... + -.++.....-++
T Consensus 342 ~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~ 420 (987)
T PRK09782 342 NEMLEERYAVSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLA 420 (987)
T ss_pred chHHHHHHhhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHH
Confidence 111110 112222222333345677888888888887652 1 122333444666
Q ss_pred HHHHccCC---HHHHHHH----------------------HHHHhhCCCCCCC--CcchHHHHHHHHHhcCCHHHHHHHH
Q 011323 205 TACGQSGA---VDRAFDV----------------------LAEMNAEVHPVDP--DHITIGALMKACANAGQVDRAREVY 257 (488)
Q Consensus 205 ~~~~~~g~---~~~a~~~----------------------~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~ 257 (488)
..|.+.+. ..++..+ ++.........++ +...|..+..++.. +++++|...+
T Consensus 421 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~ 499 (987)
T PRK09782 421 SLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAW 499 (987)
T ss_pred HHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHH
Confidence 66666655 2233222 1111111111122 33455556655555 7777788877
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc
Q 011323 258 KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV 337 (488)
Q Consensus 258 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 337 (488)
....... |+......+...+...|++++|...++++... .|+...+..+..++.+.|++++|...++...+.. +.
T Consensus 500 ~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~ 574 (987)
T PRK09782 500 LQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LG 574 (987)
T ss_pred HHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-Cc
Confidence 7666543 44334444455556788888888888887554 2333445566677788888888888888887764 22
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 011323 338 GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 417 (488)
Q Consensus 338 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 417 (488)
....+..+.......|++++|...+++..+.. |+...|..+...+.+.|++++|+..+++..... +.+...+..+..
T Consensus 575 ~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~ 651 (987)
T PRK09782 575 DNALYWWLHAQRYIPGQPELALNDLTRSLNIA--PSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGY 651 (987)
T ss_pred cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 33334344444455688888888888887654 567778888888888888888888888887752 334667777778
Q ss_pred HHhhcCCHHHHHHHHHHHHHcCCCCcHH-HHHHHHHHHhh--cHHHHHHHHHHhhhccCCCCc
Q 011323 418 ACERKDDVEVGLMLLSQAKEDGVIPNLV-MFKCIIGMCSR--RYEKARTLNEHVLSFNSGRPQ 477 (488)
Q Consensus 418 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~--~~~~a~~~~~~~~~~~~~~~~ 477 (488)
++...|++++|+..++++.+.. |+.. .+..+..++.. ++++|....+++...+|....
T Consensus 652 aL~~~G~~eeAi~~l~~AL~l~--P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~ 712 (987)
T PRK09782 652 ALWDSGDIAQSREMLERAHKGL--PDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQAL 712 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCch
Confidence 8888888888888888887743 3332 33334344433 788888888888877776655
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.6e-16 Score=151.39 Aligned_cols=419 Identities=11% Similarity=0.007 Sum_probs=305.1
Q ss_pred cccccCCCchhHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCC---CCCHHH
Q 011323 18 HANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLST 94 (488)
Q Consensus 18 ~~~~~~~~~~~~~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~ 94 (488)
.+..|.+...-......+...|+.++|+..+++..... +........++..+...|++++|+++|+++. +.++..
T Consensus 61 L~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~--n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~ 138 (822)
T PRK14574 61 SKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSM--NISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDL 138 (822)
T ss_pred HhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Confidence 34445553222244455568899999999999998322 3333333444678888899999999999876 456677
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 011323 95 FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAK 174 (488)
Q Consensus 95 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 174 (488)
+..++..+...++.++|++.++.+... .|+...+..++..+...++..+|++.++++.+.. +.+...+..+..++.+
T Consensus 139 l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~ 215 (822)
T PRK14574 139 ISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQR 215 (822)
T ss_pred HHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 778888999999999999999999875 4566666555555555677767999999999884 4467788889999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHhHH------HHHHHHH---H--ccCC---HHHHHHHHHHHhhCCCCCCCCcch----
Q 011323 175 AGQVAKAFGAYGIMRSKNVKPDRVVF------NALITAC---G--QSGA---VDRAFDVLAEMNAEVHPVDPDHIT---- 236 (488)
Q Consensus 175 ~~~~~~a~~~~~~~~~~~~~~~~~~~------~~ll~~~---~--~~g~---~~~a~~~~~~~~~~~~~~~~~~~~---- 236 (488)
.|-...|+++..+-... +.+...-+ ...++.- . ...+ .+.|+.-++.+.......++....
T Consensus 216 ~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~ 294 (822)
T PRK14574 216 NRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRA 294 (822)
T ss_pred cCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHH
Confidence 99999998877653322 11111111 1111110 0 1112 345566666665532222222222
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCC-----CCCHHHHHHHH
Q 011323 237 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGV-----IPDEVFLSALI 311 (488)
Q Consensus 237 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~ 311 (488)
..-.+-++...|+..++++.++.+...+.+....+-..+.++|...+++++|..+++.+..... .++......|.
T Consensus 295 ~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~ 374 (822)
T PRK14574 295 RIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLY 374 (822)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHH
Confidence 2234557788999999999999999988766778999999999999999999999999876431 23444467888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCC-----------Ccc---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 011323 312 DFAGHAGKVEAAFEILQEAKNQGI-----------SVG---IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 377 (488)
Q Consensus 312 ~~~~~~g~~~~a~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 377 (488)
-++...+++++|..+++.+.+... .|+ ...+..++..+...|++.+|++.++++.... +-|....
T Consensus 375 yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~ 453 (822)
T PRK14574 375 YSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLR 453 (822)
T ss_pred HHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHH
Confidence 999999999999999999987422 122 1234456777889999999999999998765 6789999
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHH
Q 011323 378 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVM 446 (488)
Q Consensus 378 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 446 (488)
..+...+...|.+.+|.+.++..... -+-+..+....+.++...|++++|..+.+.+.+. .|+...
T Consensus 454 ~~~A~v~~~Rg~p~~A~~~~k~a~~l-~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~--~Pe~~~ 519 (822)
T PRK14574 454 IALASIYLARDLPRKAEQELKAVESL-APRSLILERAQAETAMALQEWHQMELLTDDVISR--SPEDIP 519 (822)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhh-CCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--CCCchh
Confidence 99999999999999999999877664 2334677788889999999999999999988874 455543
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.8e-16 Score=146.96 Aligned_cols=404 Identities=13% Similarity=0.110 Sum_probs=248.9
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCch-HHHHHHHHHHHhhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHhcC----Ch
Q 011323 37 RQGRISECIDLLEDMERKGLLDMD-KVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSK----DS 108 (488)
Q Consensus 37 ~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~----~~ 108 (488)
.+|++++|...|.+..+.+ +.+ ..-+.-+++.+...|+++.+...|+++. +.+..+.-.+...|+..+ ..
T Consensus 319 a~Gd~ekA~~yY~~s~k~~--~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~ 396 (1018)
T KOG2002|consen 319 AQGDFEKAFKYYMESLKAD--NDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKR 396 (1018)
T ss_pred hhccHHHHHHHHHHHHccC--CCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHH
Confidence 4555555555555554443 233 3333444555555555555555555443 223333333444444332 23
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHH----HcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 011323 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMV----NAGIEPNVHTYGALIDGCAKAGQVAKAFGA 184 (488)
Q Consensus 109 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 184 (488)
+.|..++....+.- +.|...|-.+...+..... ..++.+|.... ..+-.+-....|.+...+...|+++.|...
T Consensus 397 d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~-~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~ 474 (1018)
T KOG2002|consen 397 DKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDP-WASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEH 474 (1018)
T ss_pred HHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcCh-HHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHH
Confidence 44444444444332 3344455544444433322 22244443322 334345556666666666666777777666
Q ss_pred HHHHHhC---CCCCCH------hHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCc-chHHHHHHHHHhcCCHHHHH
Q 011323 185 YGIMRSK---NVKPDR------VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH-ITIGALMKACANAGQVDRAR 254 (488)
Q Consensus 185 ~~~~~~~---~~~~~~------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~ 254 (488)
|...... ...+|. .+-..+.+.+-..++.+.|.+.|..+... .|+- ..|..+.......+...+|.
T Consensus 475 f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke----hp~YId~ylRl~~ma~~k~~~~ea~ 550 (1018)
T KOG2002|consen 475 FKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE----HPGYIDAYLRLGCMARDKNNLYEAS 550 (1018)
T ss_pred HHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH----CchhHHHHHHhhHHHHhccCcHHHH
Confidence 6665543 111222 22233444455556666777777666654 2321 23333333333446677777
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhc------------CCHH
Q 011323 255 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK-GVIPDEVFLSALIDFAGHA------------GKVE 321 (488)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~------------g~~~ 321 (488)
..+......+ ..++..++.+.+.+.+...+..|.+-|..+.+. ...+|..+.-.|.+.|.+. +..+
T Consensus 551 ~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~ 629 (1018)
T KOG2002|consen 551 LLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQE 629 (1018)
T ss_pred HHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHH
Confidence 7777777655 567778888888888888888888877666543 2235777777777765532 4567
Q ss_pred HHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 011323 322 AAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMK 401 (488)
Q Consensus 322 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 401 (488)
.|+++|.++.+.. +-+...-|.+.-+++..|++..|..+|.++++.. .....+|-.+..+|..+|++..|+++|+...
T Consensus 630 KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~l 707 (1018)
T KOG2002|consen 630 KALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRLAIQMYENCL 707 (1018)
T ss_pred HHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999888875 5578888888889999999999999999998765 3456788889999999999999999998865
Q ss_pred h-CCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Q 011323 402 S-LGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451 (488)
Q Consensus 402 ~-~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 451 (488)
+ ..-..+......|.+++.+.|.+.+|.+.+..+....+.-....+|..+
T Consensus 708 kkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~ 758 (1018)
T KOG2002|consen 708 KKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLAL 758 (1018)
T ss_pred HHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHH
Confidence 4 3334567888899999999999999999998887765554555555544
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.9e-15 Score=142.37 Aligned_cols=451 Identities=12% Similarity=0.078 Sum_probs=327.3
Q ss_pred cccCCCchhHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CchHHHHHHHHHHHhhhHHHHHHHHHhhhCCC--CCH--HH
Q 011323 20 NYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLL-DMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--PTL--ST 94 (488)
Q Consensus 20 ~~~~~~~~~~~~~~~l~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~--~~ 94 (488)
..++++..-.+..+.+.-.|++..++++.+.+...... +.-+.-+..+++.+-..|++++|..+|....+ ++. ..
T Consensus 265 ~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~ 344 (1018)
T KOG2002|consen 265 ENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLP 344 (1018)
T ss_pred hcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCcccc
Confidence 35566666777778888899999999999988876421 11122355677778888999999999876542 333 33
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC----CHhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 011323 95 FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG----KVDAMFEVFHEMVNAGIEPNVHTYGALID 170 (488)
Q Consensus 95 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 170 (488)
+--+...+...|+.+.+...|+.+.+.. +.+..+...+...|...+ ..+.|..++.+..+.- +.|...|-.+..
T Consensus 345 ~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laq 422 (1018)
T KOG2002|consen 345 LVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQ 422 (1018)
T ss_pred ccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHH
Confidence 4457788999999999999999998764 556777777777777775 4566666666666553 456777877777
Q ss_pred HHHhcCCHHHHHHHHHHHH----hCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCC-CCCCCcc------hHHH
Q 011323 171 GCAKAGQVAKAFGAYGIMR----SKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVH-PVDPDHI------TIGA 239 (488)
Q Consensus 171 ~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~------~~~~ 239 (488)
.+-.. +...++..|.... ..+-.+.+...|.+...+...|+++.|...|+....... ...+|.. +--.
T Consensus 423 l~e~~-d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YN 501 (1018)
T KOG2002|consen 423 LLEQT-DPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYN 501 (1018)
T ss_pred HHHhc-ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHH
Confidence 76654 4444466665543 445567788999999999999999999999988866411 1233331 1222
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 011323 240 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 319 (488)
Q Consensus 240 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 319 (488)
+....-..++.+.|.+.|..+.+.. +.-...|--++......+...+|...+++.....- .++..++.+...+.....
T Consensus 502 larl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~-~np~arsl~G~~~l~k~~ 579 (1018)
T KOG2002|consen 502 LARLLEELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDS-SNPNARSLLGNLHLKKSE 579 (1018)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhccc-CCcHHHHHHHHHHHhhhh
Confidence 4455566778999999999998864 33345555555444455778889999988877533 255666777778888888
Q ss_pred HHHHHHHHHHHHHCC-CCccHHHHHHHHHHHHh------------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 011323 320 VEAAFEILQEAKNQG-ISVGIISYSSLMGACSN------------AKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386 (488)
Q Consensus 320 ~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~------------~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 386 (488)
+..|.+-|..+.+.- ..+|+.+.-.|...|.+ .+..++|+++|.++.+.. +.|...-|.+...++.
T Consensus 580 ~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~ 658 (1018)
T KOG2002|consen 580 WKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAE 658 (1018)
T ss_pred hcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhh
Confidence 888888776665442 23677777777776653 345778999999988876 6688888889999999
Q ss_pred CCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHc-CCCCcHHHHHHHHHHHhh--cHHHHHH
Q 011323 387 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED-GVIPNLVMFKCIIGMCSR--RYEKART 463 (488)
Q Consensus 387 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~--~~~~a~~ 463 (488)
.|++.+|..+|.+..+.. .....+|..+...|...|++..|++.|+...+. ...-+..+..+|-+++.+ ++.+|.+
T Consensus 659 kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~ 737 (1018)
T KOG2002|consen 659 KGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKE 737 (1018)
T ss_pred ccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHH
Confidence 999999999999998864 345678889999999999999999999988766 555667777788887765 7888888
Q ss_pred HHHHhhhccCCCCc
Q 011323 464 LNEHVLSFNSGRPQ 477 (488)
Q Consensus 464 ~~~~~~~~~~~~~~ 477 (488)
.........|.++.
T Consensus 738 ~ll~a~~~~p~~~~ 751 (1018)
T KOG2002|consen 738 ALLKARHLAPSNTS 751 (1018)
T ss_pred HHHHHHHhCCccch
Confidence 87777766666654
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=7.8e-17 Score=139.09 Aligned_cols=425 Identities=13% Similarity=0.172 Sum_probs=292.4
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCC----CC----CHHHHHHHHHHHHhcCCh
Q 011323 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP----NP----TLSTFNMLMSVCASSKDS 108 (488)
Q Consensus 37 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~----~~~~~~~l~~~~~~~~~~ 108 (488)
.+....+|+..|+-+.+...+|....+...+..++.+...+..|+++|.... +. .+.+.+.+...+.+.|++
T Consensus 213 ~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy 292 (840)
T KOG2003|consen 213 ANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQY 292 (840)
T ss_pred hhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccc
Confidence 4678899999999999999888888888889999999999999999987553 22 233455555678899999
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCC------------CHHHHHHHH-----HH
Q 011323 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEP------------NVHTYGALI-----DG 171 (488)
Q Consensus 109 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------------~~~~~~~l~-----~~ 171 (488)
+.|+..|+.+.+. .|+..+-..|+-++.-.|+.++..+.|.+|+.....| +....+.-+ +-
T Consensus 293 ~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~ 370 (840)
T KOG2003|consen 293 DDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKN 370 (840)
T ss_pred hhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHH
Confidence 9999999998876 5787776667777778899999999999998653222 222222221 22
Q ss_pred HHhcC--CHHHHHHHHHHHHhCCCCCCHhH---H--H----------------HHHHHHHccCCHHHHHHHHHHHhhCCC
Q 011323 172 CAKAG--QVAKAFGAYGIMRSKNVKPDRVV---F--N----------------ALITACGQSGAVDRAFDVLAEMNAEVH 228 (488)
Q Consensus 172 ~~~~~--~~~~a~~~~~~~~~~~~~~~~~~---~--~----------------~ll~~~~~~g~~~~a~~~~~~~~~~~~ 228 (488)
.-+.+ +.++++-.-.+++.--+.|+-.. | . .-...+.+.|+++.|+++++-+..+..
T Consensus 371 ~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdn 450 (840)
T KOG2003|consen 371 MEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDN 450 (840)
T ss_pred HHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccc
Confidence 22211 22222222222222222222110 0 0 012236788999999999888766432
Q ss_pred CCCCCcch-----------------------------HHHH-----HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHH
Q 011323 229 PVDPDHIT-----------------------------IGAL-----MKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI 274 (488)
Q Consensus 229 ~~~~~~~~-----------------------------~~~l-----~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 274 (488)
....-..+ |+.- .+.....|++++|.+.++.....+.. .......
T Consensus 451 k~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndas-c~ealfn 529 (840)
T KOG2003|consen 451 KTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDAS-CTEALFN 529 (840)
T ss_pred hhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchH-HHHHHHH
Confidence 21110000 0100 00112246788888888877765522 2233333
Q ss_pred HHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCC
Q 011323 275 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 354 (488)
Q Consensus 275 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 354 (488)
+.-.+-..|+.++|++.|-++..--. -+..++..+...|.-..+...|++++.+.... ++.|+..+..|...|-+.|+
T Consensus 530 iglt~e~~~~ldeald~f~klh~il~-nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegd 607 (840)
T KOG2003|consen 530 IGLTAEALGNLDEALDCFLKLHAILL-NNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGD 607 (840)
T ss_pred hcccHHHhcCHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccc
Confidence 44456778888998888877655322 26777778888888889999999998887665 57788999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH-hhcCCHHHHHHHHH
Q 011323 355 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC-ERKDDVEVGLMLLS 433 (488)
Q Consensus 355 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~~~~a~~~~~ 433 (488)
-..|.+.+-.--+. ++-+..+..-|..-|....-+++++..|++..- +.|+..-|..++..| .+.|++++|..+++
T Consensus 608 ksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk 684 (840)
T KOG2003|consen 608 KSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYK 684 (840)
T ss_pred hhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 99888776543332 355778888888888888889999999998764 689999999888666 46899999999999
Q ss_pred HHHHcCCCCcHHHHHHHHHHHhh-cHHHHHHHHHHhhh
Q 011323 434 QAKEDGVIPNLVMFKCIIGMCSR-RYEKARTLNEHVLS 470 (488)
Q Consensus 434 ~~~~~~~~~~~~~~~~li~~~~~-~~~~a~~~~~~~~~ 470 (488)
...+. ++-|......|++.+.. -+.++.++..++..
T Consensus 685 ~~hrk-fpedldclkflvri~~dlgl~d~key~~klek 721 (840)
T KOG2003|consen 685 DIHRK-FPEDLDCLKFLVRIAGDLGLKDAKEYADKLEK 721 (840)
T ss_pred HHHHh-CccchHHHHHHHHHhccccchhHHHHHHHHHH
Confidence 88764 66788888888888876 45556555554443
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.9e-13 Score=127.02 Aligned_cols=368 Identities=14% Similarity=0.141 Sum_probs=277.5
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhC---CCCCHHHHHHHHHHHHh
Q 011323 28 QLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV---PNPTLSTFNMLMSVCAS 104 (488)
Q Consensus 28 ~~~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~l~~~~~~ 104 (488)
-+.-.|.+.-+|++++|..++.++++.+ |.+...+..++.++..+|+.+++...+-.+ .+.|...|-.+.....+
T Consensus 142 ll~eAN~lfarg~~eeA~~i~~EvIkqd--p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~ 219 (895)
T KOG2076|consen 142 LLGEANNLFARGDLEEAEEILMEVIKQD--PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQ 219 (895)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHh
Confidence 3455677778899999999999999988 888899999999999999999999887543 46778899999999999
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHH----HHHHHHhcCCHHH
Q 011323 105 SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGA----LIDGCAKAGQVAK 180 (488)
Q Consensus 105 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~~~~~~ 180 (488)
.|+++.|.-.|.+..+.. +++...+-.-+..|-+.|+...|.+.|.++.....+.|..-+.. .+..+...++-+.
T Consensus 220 ~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~ 298 (895)
T KOG2076|consen 220 LGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERER 298 (895)
T ss_pred cccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHH
Confidence 999999999999999886 66666666778889999999999999999998743223333333 4556677788899
Q ss_pred HHHHHHHHHhC-CCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhC-------------------------CCCCCCCc
Q 011323 181 AFGAYGIMRSK-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE-------------------------VHPVDPDH 234 (488)
Q Consensus 181 a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-------------------------~~~~~~~~ 234 (488)
|.+.++..... +-..+...++.++..+.+...++.+.......... +....++.
T Consensus 299 a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l 378 (895)
T KOG2076|consen 299 AAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDL 378 (895)
T ss_pred HHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccc
Confidence 99998887763 22445677888889999999999888877766551 01112222
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 011323 235 ITIGALMKACANAGQVDRAREVYKMIHKYN--IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 312 (488)
Q Consensus 235 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 312 (488)
..+ .++-++.+.+..+....+...+.... +..+...|.-+..++.+.|++.+|+.+|..+......-+...|-.+..
T Consensus 379 ~v~-rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~ 457 (895)
T KOG2076|consen 379 RVI-RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLAR 457 (895)
T ss_pred hhH-hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHH
Confidence 221 22233445555555556666666655 334567899999999999999999999999988765557788999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--------CCCCCCHHHHHHHHHHH
Q 011323 313 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS--------IKLKPTVSTMNALITAL 384 (488)
Q Consensus 313 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--------~~~~~~~~~~~~l~~~~ 384 (488)
+|...|..++|.+.+....... +.+...-..|...+-+.|+.++|.+++..+.. .+..|+..........+
T Consensus 458 c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l 536 (895)
T KOG2076|consen 458 CYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDIL 536 (895)
T ss_pred HHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHH
Confidence 9999999999999999999864 44566667778888999999999999988642 22344444444555666
Q ss_pred HcCCChhHHHHHHHHH
Q 011323 385 CDGDQLPKTMEVLSDM 400 (488)
Q Consensus 385 ~~~~~~~~a~~~~~~~ 400 (488)
...|+.++=+.+...|
T Consensus 537 ~~~gk~E~fi~t~~~L 552 (895)
T KOG2076|consen 537 FQVGKREEFINTASTL 552 (895)
T ss_pred HHhhhHHHHHHHHHHH
Confidence 7777777655544443
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.74 E-value=9e-13 Score=114.93 Aligned_cols=421 Identities=13% Similarity=0.096 Sum_probs=290.5
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHhcCChhHHHH
Q 011323 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQ 113 (488)
Q Consensus 37 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~ 113 (488)
.++++..|.++|++++..+ ..+..+....+.+-.+.+.+..|+.+++++. +.-...|-..+-.--..|+...|.+
T Consensus 85 sq~e~~RARSv~ERALdvd--~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRq 162 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVD--YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQ 162 (677)
T ss_pred hHHHHHHHHHHHHHHHhcc--cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHH
Confidence 4677778888888887765 3445555556666667777888888887654 2222344444444455678888888
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-C
Q 011323 114 VLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK-N 192 (488)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~ 192 (488)
+|+...+. .|+...|++.+..=.+.+.++.|..+++...-. .|++.+|--..+.=-++|....+..+|+...+. |
T Consensus 163 iferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~ 238 (677)
T KOG1915|consen 163 IFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLG 238 (677)
T ss_pred HHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhh
Confidence 88777754 788888888888888888888888888887654 678888888888778888888888888777654 1
Q ss_pred C-CCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCC--cchHHHHHHHHHhcCCHHHHHHH--------HHHHH
Q 011323 193 V-KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD--HITIGALMKACANAGQVDRAREV--------YKMIH 261 (488)
Q Consensus 193 ~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~--------~~~~~ 261 (488)
- .-+...+.+....-.++..++.|.-+|+-.... ++.+ ...|......=-+-|+....... ++...
T Consensus 239 ~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~---~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v 315 (677)
T KOG1915|consen 239 DDEEAEILFVAFAEFEERQKEYERARFIYKYALDH---IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEV 315 (677)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHH
Confidence 0 112233444444444566777777777777653 2222 23344444333345554433332 23333
Q ss_pred hcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCH--HHHHHHH----H-HH---HhcCCHHHHHHHHHHHH
Q 011323 262 KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE--VFLSALI----D-FA---GHAGKVEAAFEILQEAK 331 (488)
Q Consensus 262 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~----~-~~---~~~g~~~~a~~~~~~~~ 331 (488)
+.+ +.|-.++-..+..-...|+.+...++|++.+.. ++|-. ..|...| + ++ ....+++.+.++++...
T Consensus 316 ~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l 393 (677)
T KOG1915|consen 316 SKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACL 393 (677)
T ss_pred HhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 333 456667777788788889999999999998875 33321 1111111 1 11 24678899999999888
Q ss_pred HCCCCccHHHHHHHHHHH----HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCC
Q 011323 332 NQGISVGIISYSSLMGAC----SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 407 (488)
Q Consensus 332 ~~~~~~~~~~~~~l~~~~----~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p 407 (488)
+. ++-...||.-+--.| .++.++..|.+++...+ |..|-..+|-..|..-.+.+++|.+..++++.++.+ |-
T Consensus 394 ~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe 469 (677)
T KOG1915|consen 394 DL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PE 469 (677)
T ss_pred hh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hH
Confidence 84 444455665554444 46788999999998876 457888999999999999999999999999999864 55
Q ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHHHHHc-CCCCcHHHHHHHHHHHhh--cHHHHHHHHHHhhhcc
Q 011323 408 NTITYSILLVACERKDDVEVGLMLLSQAKED-GVIPNLVMFKCIIGMCSR--RYEKARTLNEHVLSFN 472 (488)
Q Consensus 408 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~--~~~~a~~~~~~~~~~~ 472 (488)
|..+|......-...|+.+.|..+|+-+.+. ........|.+.|+.-.. .+++|..++++++...
T Consensus 470 ~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt 537 (677)
T KOG1915|consen 470 NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT 537 (677)
T ss_pred hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc
Confidence 7889999998889999999999999999877 345566678888875443 7999999999987543
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.1e-16 Score=141.13 Aligned_cols=263 Identities=18% Similarity=0.160 Sum_probs=113.8
Q ss_pred hhHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCCC---CCHHHHHHHHHHHH
Q 011323 27 EQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN---PTLSTFNMLMSVCA 103 (488)
Q Consensus 27 ~~~~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~ 103 (488)
..+...+.+.+.|++++|++++.........|.+..+...++.++...++.+.|++.++++.. .++..+..++.. .
T Consensus 10 ~~l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~ 88 (280)
T PF13429_consen 10 EALRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-L 88 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-c
Confidence 344556777899999999999966544432367778888888899999999999999998863 345567777777 7
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHH
Q 011323 104 SSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAG-IEPNVHTYGALIDGCAKAGQVAKAF 182 (488)
Q Consensus 104 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~ 182 (488)
..+++++|.++++...+. .++...+..++..+...++++++.++++.+.... .+++...|..+...+.+.|+.++|+
T Consensus 89 ~~~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~ 166 (280)
T PF13429_consen 89 QDGDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKAL 166 (280)
T ss_dssp -------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHH
T ss_pred cccccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 899999999999877655 3566778888899999999999999999987543 3567788899999999999999999
Q ss_pred HHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011323 183 GAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262 (488)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 262 (488)
+.+++..+.. +.|......++..+...|+.+++.++++...... +.|...+..+..++...|+.++|..+++....
T Consensus 167 ~~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~---~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~ 242 (280)
T PF13429_consen 167 RDYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA---PDDPDLWDALAAAYLQLGRYEEALEYLEKALK 242 (280)
T ss_dssp HHHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH----HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC---cCHHHHHHHHHHHhcccccccccccccccccc
Confidence 9999999873 3357788889999999999999888888887642 34556778889999999999999999999988
Q ss_pred cCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHh
Q 011323 263 YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 297 (488)
Q Consensus 263 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 297 (488)
.. +.|+.+...+..++...|+.++|.++..+..+
T Consensus 243 ~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 243 LN-PDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HS-TT-HHHHHHHHHHHT-----------------
T ss_pred cc-cccccccccccccccccccccccccccccccc
Confidence 75 67889999999999999999999998877654
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.8e-13 Score=126.95 Aligned_cols=292 Identities=11% Similarity=-0.045 Sum_probs=145.1
Q ss_pred hhhHHHHHHHHHhhhCCC--CCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHH
Q 011323 72 KSQKAIKEAFRFFKLVPN--PTLS-TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148 (488)
Q Consensus 72 ~~~~~~~~A~~~~~~~~~--~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 148 (488)
...|+++.|.+.+.+..+ |++. .+-....+..+.|+++.|.+.+....+....+...........+...|+++.|.+
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~ 174 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARH 174 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHH
Confidence 334556666666655432 2222 2223334555556666666666665543211111222233555556666666666
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHH-HHHHHH---HccCCHHHHHHHHHHHh
Q 011323 149 VFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN-ALITAC---GQSGAVDRAFDVLAEMN 224 (488)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~ll~~~---~~~g~~~~a~~~~~~~~ 224 (488)
.++.+.+.. +-+......+...+...|+++.|.+++..+.+.+.. +...+. .-..++ ...+..++..+.+..+.
T Consensus 175 ~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~ 252 (409)
T TIGR00540 175 GVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNWW 252 (409)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 666666553 224455566666666666666666666666655432 222221 111111 12222222222333332
Q ss_pred hCCC-CCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHH-HHHHHHHHHccCChHHHHHHHHHHHhCCCCC
Q 011323 225 AEVH-PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV-YTIAINCCSQTGDWEFACSVYDDMTKKGVIP 302 (488)
Q Consensus 225 ~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 302 (488)
...+ ..+.+...+..+...+...|+.+.|.++++...+......... ...........++.+.+.+.++...+..+.
T Consensus 253 ~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~- 331 (409)
T TIGR00540 253 KNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDD- 331 (409)
T ss_pred HHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCC-
Confidence 2110 0112344555555666666666666666666665432111111 011111223345566666666665554322
Q ss_pred CH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011323 303 DE--VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 366 (488)
Q Consensus 303 ~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 366 (488)
|. ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++..
T Consensus 332 ~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 332 KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33 45556666677777777777777743332334666666677777777777777777776643
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.3e-12 Score=122.83 Aligned_cols=361 Identities=14% Similarity=0.090 Sum_probs=269.8
Q ss_pred HhhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHH
Q 011323 71 CKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147 (488)
Q Consensus 71 ~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 147 (488)
.-..|++++|.+++..+. +.+...|..|...|-+.|+.+++...+-.....+ +.|...|..+.....+.|.+++|.
T Consensus 149 lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~ 227 (895)
T KOG2076|consen 149 LFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQAR 227 (895)
T ss_pred HHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHH
Confidence 344599999999998875 4567799999999999999999988776555443 557789999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHh----HHHHHHHHHHccCCHHHHHHHHHHH
Q 011323 148 EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRV----VFNALITACGQSGAVDRAFDVLAEM 223 (488)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~ll~~~~~~g~~~~a~~~~~~~ 223 (488)
-+|.+.++.. +++...+---+..|-+.|+...|...|.++.....+.|.. ....+++.+...++.+.|.+.++..
T Consensus 228 ~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~ 306 (895)
T KOG2076|consen 228 YCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGA 306 (895)
T ss_pred HHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 9999999874 4455555666788999999999999999998774222222 2334556677788889999999888
Q ss_pred hhCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCC---------------------------CCCHHHHHHHH
Q 011323 224 NAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI---------------------------KGTPEVYTIAI 276 (488)
Q Consensus 224 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---------------------------~~~~~~~~~l~ 276 (488)
... ..-..+...++.++..+.+...++.+............ .++..++ -++
T Consensus 307 ~s~-~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~-rl~ 384 (895)
T KOG2076|consen 307 LSK-EKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI-RLM 384 (895)
T ss_pred Hhh-ccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH-hHh
Confidence 763 23344566788999999999999999988877665211 1122221 223
Q ss_pred HHHHccCChHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCC
Q 011323 277 NCCSQTGDWEFACSVYDDMTKKG--VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 354 (488)
Q Consensus 277 ~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 354 (488)
-++......+....+...+.+.. +.-+...|.-+..++...|++.+|+.+|..+.....--+...|-.+.++|...|.
T Consensus 385 icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e 464 (895)
T KOG2076|consen 385 ICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGE 464 (895)
T ss_pred hhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhh
Confidence 34445555555555555555555 3335677888999999999999999999999887655567889999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHh--------CCCCCCHHHHHHHHHHHhhcCCHH
Q 011323 355 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS--------LGLCPNTITYSILLVACERKDDVE 426 (488)
Q Consensus 355 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~~~~p~~~~~~~l~~~~~~~g~~~ 426 (488)
.+.|...|+.+.... +.+...-..|...+-+.|++++|.+.+..+.. .+..|+..........+...|+.+
T Consensus 465 ~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E 543 (895)
T KOG2076|consen 465 YEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKRE 543 (895)
T ss_pred HHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHH
Confidence 999999999998764 44556666777888899999999999998642 234555555556667777788877
Q ss_pred HHHHHHHHHH
Q 011323 427 VGLMLLSQAK 436 (488)
Q Consensus 427 ~a~~~~~~~~ 436 (488)
+-+.....|.
T Consensus 544 ~fi~t~~~Lv 553 (895)
T KOG2076|consen 544 EFINTASTLV 553 (895)
T ss_pred HHHHHHHHHH
Confidence 7555554444
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.8e-14 Score=122.13 Aligned_cols=389 Identities=15% Similarity=0.142 Sum_probs=258.9
Q ss_pred cCCCchhHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCchHHH----HHHHHHHHhhhHHHHHHHHHhhhCC--CCCHHHH
Q 011323 22 AHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVY----HARFFNVCKSQKAIKEAFRFFKLVP--NPTLSTF 95 (488)
Q Consensus 22 ~~~~~~~~~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~ 95 (488)
|+...-.+..-+..++..++..|++.|.-.+..-. .-+... ...+...+.+.|++++|+.-|+.+. .||..+-
T Consensus 234 ~nag~lkmnigni~~kkr~fskaikfyrmaldqvp-sink~~rikil~nigvtfiq~gqy~dainsfdh~m~~~pn~~a~ 312 (840)
T KOG2003|consen 234 PNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVP-SINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEAPNFIAA 312 (840)
T ss_pred CCCceeeeeecceeeehhhHHHHHHHHHHHHhhcc-ccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhCccHHhh
Confidence 33333333344455578889999999987765431 222222 2233344567899999999999875 4666654
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCC------------CHHHHHHHH-----HHHHHcCCHhHHHHHHH---HHHH
Q 011323 96 NMLMSVCASSKDSEGAFQVLRLVQEAGLKA------------DCKLYTTLI-----TTCAKSGKVDAMFEVFH---EMVN 155 (488)
Q Consensus 96 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------------~~~~~~~l~-----~~~~~~~~~~~a~~~~~---~~~~ 155 (488)
-.|+-.+..-|+.++..+.|.+|...-..| +....+.-+ .-.-+.++ ..|.+..- +++.
T Consensus 313 ~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~k-a~aek~i~ta~kiia 391 (840)
T KOG2003|consen 313 LNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENK-ADAEKAIITAAKIIA 391 (840)
T ss_pred hhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhh-hhHHHHHHHHHHHhc
Confidence 444445555788999999999988642222 222222222 11212211 12222221 1111
Q ss_pred cCCCCCHHH---H--H----------------HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHH--H-------
Q 011323 156 AGIEPNVHT---Y--G----------------ALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALI--T------- 205 (488)
Q Consensus 156 ~~~~~~~~~---~--~----------------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll--~------- 205 (488)
--+.|+-.. | . .-...+.++|+++.|.+++.-+.+..-+.-...-+.|. +
T Consensus 392 pvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~ 471 (840)
T KOG2003|consen 392 PVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKD 471 (840)
T ss_pred cccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccc
Confidence 112222110 1 0 01224668899999999888776542111111111110 0
Q ss_pred ---------------------------HHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHH---HHHHHhcCCHHHHHH
Q 011323 206 ---------------------------ACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGAL---MKACANAGQVDRARE 255 (488)
Q Consensus 206 ---------------------------~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~a~~ 255 (488)
.....|++++|.+.+++.... |...-..+ .-.+-..|++++|++
T Consensus 472 ~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~n------dasc~ealfniglt~e~~~~ldeald 545 (840)
T KOG2003|consen 472 FADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNN------DASCTEALFNIGLTAEALGNLDEALD 545 (840)
T ss_pred hhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcC------chHHHHHHHHhcccHHHhcCHHHHHH
Confidence 011357889999999988764 22222222 224667899999999
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 011323 256 VYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 335 (488)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 335 (488)
.|-++...- ..+..+...+.+.|-...++..|++++.+.... ++-|+..++.|...|-+.|+-..|.+.+-.--+. +
T Consensus 546 ~f~klh~il-~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-f 622 (840)
T KOG2003|consen 546 CFLKLHAIL-LNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-F 622 (840)
T ss_pred HHHHHHHHH-HhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-c
Confidence 998887642 457788889999999999999999999887664 3448899999999999999999999887655443 5
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HcCCChhHHHHHHHHHHhCCCCCCHHHHHH
Q 011323 336 SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL-CDGDQLPKTMEVLSDMKSLGLCPNTITYSI 414 (488)
Q Consensus 336 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ 414 (488)
+-+..+...|...|....-+++++..|++..- +.|+..-|..++..| .+.|++.+|..++++..+. ++.|.....-
T Consensus 623 p~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkf 699 (840)
T KOG2003|consen 623 PCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKF 699 (840)
T ss_pred CcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHH
Confidence 67889999999999999999999999998754 479999999888655 5789999999999998775 7888999999
Q ss_pred HHHHHhhcCC
Q 011323 415 LLVACERKDD 424 (488)
Q Consensus 415 l~~~~~~~g~ 424 (488)
|++.|...|-
T Consensus 700 lvri~~dlgl 709 (840)
T KOG2003|consen 700 LVRIAGDLGL 709 (840)
T ss_pred HHHHhccccc
Confidence 9998888775
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.70 E-value=7.8e-13 Score=113.87 Aligned_cols=361 Identities=13% Similarity=0.156 Sum_probs=251.0
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHhhhCC----CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 011323 62 VYHARFFNVCKSQKAIKEAFRFFKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137 (488)
Q Consensus 62 ~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 137 (488)
.....++.-.++--..+.|.++++... +.+..++|.+|.+-.- ..-.+++.+|....+.||..|+|+++.+.
T Consensus 208 et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisqkm~Pnl~TfNalL~c~ 283 (625)
T KOG4422|consen 208 ETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGKKLVAEMISQKMTPNLFTFNALLSCA 283 (625)
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccHHHHHHHHHhhcCCchHhHHHHHHHH
Confidence 344444444444467899999998764 4677889999887543 33378899999999999999999999999
Q ss_pred HHcCCHhH----HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHh----CCCC----CCHhHHHHHH
Q 011323 138 AKSGKVDA----MFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAK-AFGAYGIMRS----KNVK----PDRVVFNALI 204 (488)
Q Consensus 138 ~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~----~~~~----~~~~~~~~ll 204 (488)
++.|+++. |.+++.+|++.|++|+..+|..+|..+++.++..+ +..++.++.. ..++ .|..-|...+
T Consensus 284 akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM 363 (625)
T KOG4422|consen 284 AKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAM 363 (625)
T ss_pred HHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHH
Confidence 99998766 56788889999999999999999999999888754 3444444432 2222 2345567788
Q ss_pred HHHHccCCHHHHHHHHHHHhhCCC--CCCCC---cchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 011323 205 TACGQSGAVDRAFDVLAEMNAEVH--PVDPD---HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCC 279 (488)
Q Consensus 205 ~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 279 (488)
..|.+..+.+-|.++..-+..... -+.|+ .+-|..+....+.....+....+|+.+.-.-.-|++.+...++.+.
T Consensus 364 ~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~ 443 (625)
T KOG4422|consen 364 SICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRAL 443 (625)
T ss_pred HHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHH
Confidence 888888999888888766654311 11222 2335566677788888999999999988777778889999999999
Q ss_pred HccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CH--------H-----HHHHHHH-------HHHHCCCCcc
Q 011323 280 SQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG-KV--------E-----AAFEILQ-------EAKNQGISVG 338 (488)
Q Consensus 280 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~--------~-----~a~~~~~-------~~~~~~~~~~ 338 (488)
.-.|+++-.-+++.++...|.........-++..+++.. ++ . -|..+++ ++.+ ....
T Consensus 444 ~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~--~~~~ 521 (625)
T KOG4422|consen 444 DVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRA--QDWP 521 (625)
T ss_pred hhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHh--ccCC
Confidence 999999999999999988775544444444444444433 11 0 1111111 2222 3456
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CC---CCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHH
Q 011323 339 IISYSSLMGACSNAKNWQKALELYEHMKSI-KL---KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 414 (488)
Q Consensus 339 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ 414 (488)
....+.++-.+.+.|+.++|.+++..+.+. +- .|.......++..-...+.+..|..+++-|...+.+.-.-.-+.
T Consensus 522 ~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~~~E~La~R 601 (625)
T KOG4422|consen 522 ATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNLPICEGLAQR 601 (625)
T ss_pred hhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCchhhhHHHHH
Confidence 778888888999999999999999998543 22 23334444566667778889999999998877653322223344
Q ss_pred HHHHHhhcCCHHHH
Q 011323 415 LLVACERKDDVEVG 428 (488)
Q Consensus 415 l~~~~~~~g~~~~a 428 (488)
+...|.-.....++
T Consensus 602 I~e~f~iNqeq~~~ 615 (625)
T KOG4422|consen 602 IMEDFAINQEQKEA 615 (625)
T ss_pred HHHhcCcCHHHHHH
Confidence 44444443333333
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.8e-12 Score=111.64 Aligned_cols=294 Identities=10% Similarity=0.049 Sum_probs=176.1
Q ss_pred HHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHhHHHHHHHHHHccC
Q 011323 134 ITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV--KPDRVVFNALITACGQSG 211 (488)
Q Consensus 134 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~g 211 (488)
..++-...+.+++.+-...+...|.+-+...-+....+.....|+++|+.+|+++.+... --|..+|..++-. +..
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv--~~~ 311 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYV--KND 311 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHH--Hhh
Confidence 344445556666666666666666554444444445555566677777777777766521 1145556555532 222
Q ss_pred CHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 011323 212 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 291 (488)
Q Consensus 212 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 291 (488)
+-. +..+.+-...-....|. |...+.+-|+-.++.++|...|+...+.+ +.....|+.+..-|....+...|.+-
T Consensus 312 ~sk--Ls~LA~~v~~idKyR~E--TCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~s 386 (559)
T KOG1155|consen 312 KSK--LSYLAQNVSNIDKYRPE--TCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIES 386 (559)
T ss_pred hHH--HHHHHHHHHHhccCCcc--ceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHH
Confidence 111 11111111111122333 55666666777777777777777777765 44556677777777777777777777
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 011323 292 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK 371 (488)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 371 (488)
++...+-.+. |-..|-.+.++|.-.+...-|+-+|++..... +.|...|.+|..+|.+.++.++|++.|.+....+ .
T Consensus 387 YRrAvdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-d 463 (559)
T KOG1155|consen 387 YRRAVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-D 463 (559)
T ss_pred HHHHHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-c
Confidence 7777765444 66777777777777777777777777776653 4567777777777777777777777777776655 3
Q ss_pred CCHHHHHHHHHHHHcCCChhHHHHHHHHHHh----CC-CCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 011323 372 PTVSTMNALITALCDGDQLPKTMEVLSDMKS----LG-LCPN-TITYSILLVACERKDDVEVGLMLLSQAKE 437 (488)
Q Consensus 372 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~-~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 437 (488)
.+...+..|...|-+.++..+|...+++-++ .| +.|. .....-|..-+.+.+++++|..+......
T Consensus 464 te~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~ 535 (559)
T KOG1155|consen 464 TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK 535 (559)
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence 4556677777777777777777777666443 22 1221 12222244555666677766666555443
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.9e-11 Score=109.81 Aligned_cols=396 Identities=13% Similarity=0.094 Sum_probs=246.9
Q ss_pred CCchhHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhC---CCCCHHHHHHHHH
Q 011323 24 DVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV---PNPTLSTFNMLMS 100 (488)
Q Consensus 24 ~~~~~~~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~l~~ 100 (488)
.++..+..|.......+.+.|+-++.+..+-= |....+... +.+...++.|..++.+. .+.+..+|-+-..
T Consensus 375 ~iP~sv~LWKaAVelE~~~darilL~rAvecc--p~s~dLwlA----larLetYenAkkvLNkaRe~iptd~~IWitaa~ 448 (913)
T KOG0495|consen 375 HIPRSVRLWKAAVELEEPEDARILLERAVECC--PQSMDLWLA----LARLETYENAKKVLNKAREIIPTDREIWITAAK 448 (913)
T ss_pred hCCchHHHHHHHHhccChHHHHHHHHHHHHhc--cchHHHHHH----HHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHH
Confidence 45667888888888888888888888887753 444443332 33345567777776654 3567788877777
Q ss_pred HHHhcCChhHHHHHHHH----HHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHh
Q 011323 101 VCASSKDSEGAFQVLRL----VQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEP--NVHTYGALIDGCAK 174 (488)
Q Consensus 101 ~~~~~~~~~~a~~~~~~----~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~ 174 (488)
.--.+|+.+....++++ +...|+..+...|..=...|-..|.+-.+..+....+..|++- -..||+.-...|.+
T Consensus 449 LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k 528 (913)
T KOG0495|consen 449 LEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEK 528 (913)
T ss_pred HHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHh
Confidence 77778888888877754 3456777788888877788888888888888888887777543 24577777777888
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCCHHHHH
Q 011323 175 AGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 254 (488)
Q Consensus 175 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 254 (488)
.+.++-|..+|....+. ++.+...|......--..|..+....+|.+.... ++.....|......+-..|+...|.
T Consensus 529 ~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~---~pkae~lwlM~ake~w~agdv~~ar 604 (913)
T KOG0495|consen 529 RPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ---CPKAEILWLMYAKEKWKAGDVPAAR 604 (913)
T ss_pred cchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh---CCcchhHHHHHHHHHHhcCCcHHHH
Confidence 88888888777777654 2344555655555555567777777777776653 2223334444455556667777777
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 011323 255 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334 (488)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 334 (488)
.++..+.+.. +.+...+.+-+.....+..++.|..+|.+.... .|+...|.--+..-.-.+..++|.+++++..+.
T Consensus 605 ~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~- 680 (913)
T KOG0495|consen 605 VILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS- 680 (913)
T ss_pred HHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-
Confidence 7777666654 345666666666667777777777777665553 334444544444444556666666666666554
Q ss_pred CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHH
Q 011323 335 ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 414 (488)
Q Consensus 335 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ 414 (488)
++.-...|..+.+.+.+.++.+.|...|..-.+. ++.....|-.+...--+.|++-+|..++++..-.+ +-+...|..
T Consensus 681 fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle 758 (913)
T KOG0495|consen 681 FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLE 758 (913)
T ss_pred CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHH
Confidence 2323445555556666666666666555543332 12333444444444455555566666665554432 334555555
Q ss_pred HHHHHhhcCCHHHHHHHHHHH
Q 011323 415 LLVACERKDDVEVGLMLLSQA 435 (488)
Q Consensus 415 l~~~~~~~g~~~~a~~~~~~~ 435 (488)
.++.-.+.|+.+.|..+..++
T Consensus 759 ~Ir~ElR~gn~~~a~~lmakA 779 (913)
T KOG0495|consen 759 SIRMELRAGNKEQAELLMAKA 779 (913)
T ss_pred HHHHHHHcCCHHHHHHHHHHH
Confidence 555555666555555444433
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.2e-13 Score=124.63 Aligned_cols=282 Identities=11% Similarity=0.018 Sum_probs=209.1
Q ss_pred hhHHHHHHHHHhhhCCC--CCHHHHHHH-HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHHcCCHhHHH
Q 011323 73 SQKAIKEAFRFFKLVPN--PTLSTFNML-MSVCASSKDSEGAFQVLRLVQEAGLKADCKLYT--TLITTCAKSGKVDAMF 147 (488)
Q Consensus 73 ~~~~~~~A~~~~~~~~~--~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~ 147 (488)
..|+++.|++.+...+. +++..+..+ ..+..+.|+++.|.+.+.++.+. .|+..... .....+...|+++.|.
T Consensus 96 ~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 96 AEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred hCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 35888888888887653 234444333 34447889999999999988764 45543322 3366788889999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-------hHHHHHHHHHHccCCHHHHHHHH
Q 011323 148 EVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDR-------VVFNALITACGQSGAVDRAFDVL 220 (488)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~ll~~~~~~g~~~~a~~~~ 220 (488)
+.++.+.+.. +-+......+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...+++
T Consensus 174 ~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w 252 (398)
T PRK10747 174 HGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWW 252 (398)
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 9999988775 446778888889999999999999999999887644322 23444455555556667777777
Q ss_pred HHHhhCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCC
Q 011323 221 AEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGV 300 (488)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 300 (488)
+.+... .+.+......+...+...|+.++|..+++...+. ++++... ++.+....++++++.+..+...+..+
T Consensus 253 ~~lp~~---~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P 325 (398)
T PRK10747 253 KNQSRK---TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHG 325 (398)
T ss_pred HhCCHH---HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCC
Confidence 776543 2335557777888889999999999999888773 4454322 23344456889999999998888755
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011323 301 IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 367 (488)
Q Consensus 301 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 367 (488)
. |...+..+...|.+.+++++|.+.|+...+. .|+...+..+...+.+.|+.++|.+++++...
T Consensus 326 ~-~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 326 D-TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred C-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4 6777888889999999999999999998885 57888888899999999999999999987754
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.4e-13 Score=123.66 Aligned_cols=283 Identities=13% Similarity=0.055 Sum_probs=143.2
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHhcCCHHHHH
Q 011323 105 SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYG--ALIDGCAKAGQVAKAF 182 (488)
Q Consensus 105 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~ 182 (488)
.|+++.|.+.+....+.. +-....|.....+..+.|+++.|.+.+.++.+. .|+..... .....+...|+++.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~-~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA-EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcc-cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 466666666665544331 111222333334445666677777776666654 34433222 2245566666777777
Q ss_pred HHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCc------chHHHHHHHHHhcCCHHHHHHH
Q 011323 183 GAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH------ITIGALMKACANAGQVDRAREV 256 (488)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~ 256 (488)
..++.+.+.. +-+......+...|.+.|++++|.+++..+.+.. ...++. .+|..++.......+.+...++
T Consensus 174 ~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~-~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~ 251 (398)
T PRK10747 174 HGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAH-VGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW 251 (398)
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 7666666554 3345566666666666667777666666666542 111110 1122222222233334444444
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 011323 257 YKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGIS 336 (488)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 336 (488)
++.+.+.- +.++.....+...+...|+.++|.+++++..+. .|+.... ++.+....++.+++.+..+...+.. +
T Consensus 252 w~~lp~~~-~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~-P 325 (398)
T PRK10747 252 WKNQSRKT-RHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH-G 325 (398)
T ss_pred HHhCCHHH-hCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC-C
Confidence 44443322 344555555555556666666666665555543 2222111 1122223355555555555555443 3
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHH
Q 011323 337 VGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM 400 (488)
Q Consensus 337 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 400 (488)
-|+..+..+...|.+.|++++|.+.|+...+. .|+...+..+...+.+.|+.++|.+++++.
T Consensus 326 ~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 326 DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34445555555555555555555555555543 355555555555555555555555555554
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.6e-16 Score=138.71 Aligned_cols=258 Identities=18% Similarity=0.166 Sum_probs=61.3
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 011323 99 MSVCASSKDSEGAFQVLRLVQEAG-LKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQ 177 (488)
Q Consensus 99 ~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 177 (488)
...+.+.|++++|+++++...... .+.+...|..+...+...++.+.|.+.++++...+. -+...+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~-~~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK-ANPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccc-ccccc
Confidence 334444555555555553322221 122333333334444444555555555555544331 133334444444 34455
Q ss_pred HHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHH
Q 011323 178 VAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY 257 (488)
Q Consensus 178 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 257 (488)
+++|.+++....+. .++...+..++..+...++++++.++++.+... ...+.+...|..+...+.+.|+.++|.+.+
T Consensus 93 ~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 93 PEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEEL-PAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH--T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred cccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhc-cCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 55555554444332 233344444444455555555555555554332 112233334444444455555555555555
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc
Q 011323 258 KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV 337 (488)
Q Consensus 258 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 337 (488)
++..+.. |.++.....++..+...|+.+++.+++....+.. +.|...+..+..++...|+.++|...+++..+.. +.
T Consensus 170 ~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~ 246 (280)
T PF13429_consen 170 RKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PD 246 (280)
T ss_dssp HHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT
T ss_pred HHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-cc
Confidence 5554443 3344444455555555555555444444444332 1122334444445555555555555555544432 23
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011323 338 GIISYSSLMGACSNAKNWQKALELYEH 364 (488)
Q Consensus 338 ~~~~~~~l~~~~~~~g~~~~a~~~~~~ 364 (488)
|+.....+..++...|+.++|.++.++
T Consensus 247 d~~~~~~~a~~l~~~g~~~~A~~~~~~ 273 (280)
T PF13429_consen 247 DPLWLLAYADALEQAGRKDEALRLRRQ 273 (280)
T ss_dssp -HHHHHHHHHHHT--------------
T ss_pred ccccccccccccccccccccccccccc
Confidence 444444555555555555555544443
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.3e-11 Score=107.48 Aligned_cols=294 Identities=15% Similarity=0.061 Sum_probs=223.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhc
Q 011323 168 LIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 247 (488)
Q Consensus 168 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 247 (488)
+..++....+.+++.+-.+.....|++-+...-+....+.....++++|+.+|+++.++.+---.|..+|+.++.+-...
T Consensus 233 ~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~ 312 (559)
T KOG1155|consen 233 LKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDK 312 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhh
Confidence 34455666688888888888888888767666666777778889999999999999987422223556777666433222
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 011323 248 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327 (488)
Q Consensus 248 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 327 (488)
..+. -+-+.....+ +--+.|...+.+.|.-.++.++|...|++..+.+.. ....|+.+..-|....+...|.+-+
T Consensus 313 skLs---~LA~~v~~id-KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sY 387 (559)
T KOG1155|consen 313 SKLS---YLAQNVSNID-KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESY 387 (559)
T ss_pred HHHH---HHHHHHHHhc-cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHH
Confidence 1211 1112222222 334478889999999999999999999999997655 5677888888999999999999999
Q ss_pred HHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCC
Q 011323 328 QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 407 (488)
Q Consensus 328 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p 407 (488)
+..++-+ +-|-..|-.|.++|.-.+.+.-|.-.|++..... +.|...|.+|..+|.+.++.++|++.|......| ..
T Consensus 388 RrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dt 464 (559)
T KOG1155|consen 388 RRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DT 464 (559)
T ss_pred HHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-cc
Confidence 9999976 5688999999999999999999999999998876 6789999999999999999999999999998865 45
Q ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHHHHHc----CCCCcHHHH-HHHHHHHh-h--cHHHHHHHHHHhh
Q 011323 408 NTITYSILLVACERKDDVEVGLMLLSQAKED----GVIPNLVMF-KCIIGMCS-R--RYEKARTLNEHVL 469 (488)
Q Consensus 408 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~-~~li~~~~-~--~~~~a~~~~~~~~ 469 (488)
+...+..|...+.+.++.++|...+++..+. |...+.... ...+..+. + ++++|........
T Consensus 465 e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 465 EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVL 534 (559)
T ss_pred chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHh
Confidence 6788999999999999999999999887653 333332222 22222222 2 6777666544433
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.68 E-value=5.6e-12 Score=110.10 Aligned_cols=399 Identities=11% Similarity=0.053 Sum_probs=298.6
Q ss_pred hhHHHHHHHH----hcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCC--CCCHHHHHHHHH
Q 011323 27 EQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPTLSTFNMLMS 100 (488)
Q Consensus 27 ~~~~~~~~l~----~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l~~ 100 (488)
.++..|-.++ ++..+..|..++++....- |....+....+.+--..|++.-|+++|++-. +|+..+|++.|.
T Consensus 105 r~itLWlkYae~Emknk~vNhARNv~dRAvt~l--PRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~ 182 (677)
T KOG1915|consen 105 RNITLWLKYAEFEMKNKQVNHARNVWDRAVTIL--PRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPDEQAWLSFIK 182 (677)
T ss_pred ccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc--chHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHH
Confidence 3455555555 8999999999999998763 6666666666666677899999999999765 799999999999
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHc-CC-CCCHHHHHHHHHHHHhcCCH
Q 011323 101 VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA-GI-EPNVHTYGALIDGCAKAGQV 178 (488)
Q Consensus 101 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~ 178 (488)
.-.+-+..+.|..+++...-. .|++.+|-.....=.++|.+..+.++|....+. |- ..+...+.+....=.++..+
T Consensus 183 fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ 260 (677)
T KOG1915|consen 183 FELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEY 260 (677)
T ss_pred HHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998753 699999999999999999999999999988764 21 12334455555555678889
Q ss_pred HHHHHHHHHHHhCCCCCC--HhHHHHHHHHHHccCCHHHHHHH--------HHHHhhCCCCCCCCcchHHHHHHHHHhcC
Q 011323 179 AKAFGAYGIMRSKNVKPD--RVVFNALITACGQSGAVDRAFDV--------LAEMNAEVHPVDPDHITIGALMKACANAG 248 (488)
Q Consensus 179 ~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~g~~~~a~~~--------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 248 (488)
+.|.-+|+-.++.- +.+ ...|......--+-|+....... ++.+... -+.|-.+|-..++.-...|
T Consensus 261 ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~---np~nYDsWfdylrL~e~~g 336 (677)
T KOG1915|consen 261 ERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSK---NPYNYDSWFDYLRLEESVG 336 (677)
T ss_pred HHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHh---CCCCchHHHHHHHHHHhcC
Confidence 99999999888762 222 33444444433344554433332 3333332 1345557777888888889
Q ss_pred CHHHHHHHHHHHHhcCCCCCHH-------HHHHH---HHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH----
Q 011323 249 QVDRAREVYKMIHKYNIKGTPE-------VYTIA---INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA---- 314 (488)
Q Consensus 249 ~~~~a~~~~~~~~~~~~~~~~~-------~~~~l---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---- 314 (488)
+.+...++|+.+...- +|-.. +|.-+ +-.-....+++.+.++++..++. ++...+||.-+--.|
T Consensus 337 ~~~~Ire~yErAIanv-pp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~fe 414 (677)
T KOG1915|consen 337 DKDRIRETYERAIANV-PPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFE 414 (677)
T ss_pred CHHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHH
Confidence 9999999999998754 44221 22211 11123468899999999998883 344566666554444
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHH
Q 011323 315 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 394 (488)
Q Consensus 315 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 394 (488)
.++.++..|.+++..... ..|-..+|...|..-.+.++++.+.+++++..+.+ +-|..+|......-...|+.+.|.
T Consensus 415 IRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaR 491 (677)
T KOG1915|consen 415 IRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRAR 491 (677)
T ss_pred HHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHH
Confidence 467889999999987764 56888999999999999999999999999999877 567788888888888899999999
Q ss_pred HHHHHHHhCC-CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHc
Q 011323 395 EVLSDMKSLG-LCPNTITYSILLVACERKDDVEVGLMLLSQAKED 438 (488)
Q Consensus 395 ~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 438 (488)
.+|.-.++.. +.-....|...|.--...|.++.|..+++++++.
T Consensus 492 aifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 492 AIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR 536 (677)
T ss_pred HHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh
Confidence 9999988642 2223456777777778899999999999999875
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.5e-13 Score=111.79 Aligned_cols=278 Identities=13% Similarity=0.122 Sum_probs=165.9
Q ss_pred chhHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCC-CCCHH------HHHHH
Q 011323 26 SEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP-NPTLS------TFNML 98 (488)
Q Consensus 26 ~~~~~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~------~~~~l 98 (488)
+.++...|.|+ +.+.++|.++|.+|.+.+ |....++..++.++++.|..+.|+++..... +||.. ....|
T Consensus 37 r~Yv~GlNfLL-s~Q~dKAvdlF~e~l~~d--~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL 113 (389)
T COG2956 37 RDYVKGLNFLL-SNQPDKAVDLFLEMLQED--PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQL 113 (389)
T ss_pred HHHHhHHHHHh-hcCcchHHHHHHHHHhcC--chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 45666777776 678899999999999876 7778888899999999999999999887654 34332 23334
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHh
Q 011323 99 MSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNV----HTYGALIDGCAK 174 (488)
Q Consensus 99 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~ 174 (488)
.+-|...|-++.|+++|..+.+.+ .--......|+..|-...+|++|+++-.++.+.|.++.. ..|.-+...+..
T Consensus 114 ~~Dym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~ 192 (389)
T COG2956 114 GRDYMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALA 192 (389)
T ss_pred HHHHHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhh
Confidence 455667777777777777776543 234456667777777777777777777777766533332 234555555555
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCCHHHHH
Q 011323 175 AGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 254 (488)
Q Consensus 175 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 254 (488)
..+++.|..++.+..+.+ +.....-..+.+.....|+++.|.+.++.+.++++..- ..+...+..+|...|+.++..
T Consensus 193 ~~~~d~A~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl--~evl~~L~~~Y~~lg~~~~~~ 269 (389)
T COG2956 193 SSDVDRARELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYL--SEVLEMLYECYAQLGKPAEGL 269 (389)
T ss_pred hhhHHHHHHHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHH--HHHHHHHHHHHHHhCCHHHHH
Confidence 666677777766666553 22233333444556666666666666666665421111 224455556666666666666
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 011323 255 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 314 (488)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 314 (488)
..+..+.+.... +..-..+........-.+.|...+.+-..+ .|+...+..++..-
T Consensus 270 ~fL~~~~~~~~g--~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~ 325 (389)
T COG2956 270 NFLRRAMETNTG--ADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYH 325 (389)
T ss_pred HHHHHHHHccCC--ccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhh
Confidence 666555544322 222233333333333334444433333322 25555555555543
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.2e-12 Score=121.63 Aligned_cols=287 Identities=11% Similarity=-0.013 Sum_probs=139.2
Q ss_pred hcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCCHHH
Q 011323 104 SSKDSEGAFQVLRLVQEAGLKAD-CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNV--HTYGALIDGCAKAGQVAK 180 (488)
Q Consensus 104 ~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~ 180 (488)
..|+++.|.+.+....+. .|+ ...+-....++...|+.+.|.+.+.+..+. .|+. .........+...|+++.
T Consensus 96 ~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~~~~~~~ 171 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLAQNELHA 171 (409)
T ss_pred hCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHHCCCHHH
Confidence 457777777777665554 233 333344455666667777777777776554 2332 233334666666777777
Q ss_pred HHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHH-HHHHHH---HhcCCHHHHHHH
Q 011323 181 AFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG-ALMKAC---ANAGQVDRAREV 256 (488)
Q Consensus 181 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~-~l~~~~---~~~~~~~~a~~~ 256 (488)
|...++.+.+.. +-+......+...+...|++++|.+.+..+.+.. .. +...+. ....++ ...+..+.+.+.
T Consensus 172 Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~--~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~ 247 (409)
T TIGR00540 172 ARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAG--LF-DDEEFADLEQKAEIGLLDEAMADEGIDG 247 (409)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC--CC-CHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 777777776664 3355566666777777777777777777766542 11 111111 000111 111122222223
Q ss_pred HHHHHhcCC---CCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHH
Q 011323 257 YKMIHKYNI---KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFL-SALIDFAGHAGKVEAAFEILQEAKN 332 (488)
Q Consensus 257 ~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~ 332 (488)
+..+.+... +.++..+..+...+...|+.+.|.+++++..+..+......+ ..........++.+.+.+.++...+
T Consensus 248 L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk 327 (409)
T TIGR00540 248 LLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAK 327 (409)
T ss_pred HHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHH
Confidence 322222211 124555555666666666666666666665554322111100 0011111223444444444444443
Q ss_pred CCCCccH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHH
Q 011323 333 QGISVGI--ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSD 399 (488)
Q Consensus 333 ~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 399 (488)
.. +.++ ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++
T Consensus 328 ~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~ 395 (409)
T TIGR00540 328 NV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQD 395 (409)
T ss_pred hC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 32 2223 334444555555555555555555322222234444444555555555555555555554
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.7e-12 Score=106.60 Aligned_cols=289 Identities=15% Similarity=0.135 Sum_probs=207.1
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCCHHHH
Q 011323 105 SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEP---NVHTYGALIDGCAKAGQVAKA 181 (488)
Q Consensus 105 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a 181 (488)
+++.++|.++|-+|.+.. +.+..+.-.|.+.|.+.|.+++|+.+.+.+.+..--+ .......|.+-|...|-++.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 567899999999998753 4466677788899999999999999999988642111 122345566778889999999
Q ss_pred HHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCC----cchHHHHHHHHHhcCCHHHHHHHH
Q 011323 182 FGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD----HITIGALMKACANAGQVDRAREVY 257 (488)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~ 257 (488)
+.+|..+.+.+ ..-......|+..|-...+|++|+++-+++..-+ -.+. ...|.-+...+....+.+.|..++
T Consensus 127 E~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~--~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l 203 (389)
T COG2956 127 EDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLG--GQTYRVEIAQFYCELAQQALASSDVDRARELL 203 (389)
T ss_pred HHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcC--CccchhHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 99999998765 3456777889999999999999999988776531 1111 123555556666677888899999
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc
Q 011323 258 KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV 337 (488)
Q Consensus 258 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 337 (488)
++..+.+ +.+...--.+.+.....|++..|.+.++.+.+.+..--..+...|..+|.+.|+.++....+..+.+....+
T Consensus 204 ~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~ 282 (389)
T COG2956 204 KKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGA 282 (389)
T ss_pred HHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCc
Confidence 8888776 445555566777888889999999999988887665556677888888999999999988888888764333
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc---CCChhHHHHHHHHHHh
Q 011323 338 GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD---GDQLPKTMEVLSDMKS 402 (488)
Q Consensus 338 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~ 402 (488)
..-..+..........+.|...+.+-... +|+...+..++..... .|...+.+.+++.|..
T Consensus 283 --~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 283 --DAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred --cHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 33334444444444556666555544433 6888888888876543 3445666667777753
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.65 E-value=3e-12 Score=112.19 Aligned_cols=388 Identities=11% Similarity=0.069 Sum_probs=256.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCCCCCHH---HHHHHHHHHHhcCChh
Q 011323 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLS---TFNMLMSVCASSKDSE 109 (488)
Q Consensus 33 ~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~ 109 (488)
|...++|++++|++.|.+.+... |+.++++......+...|++++..+..-+..+-++. .+.--.+++-..|+++
T Consensus 123 N~~f~~kkY~eAIkyY~~AI~l~--p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~ 200 (606)
T KOG0547|consen 123 NKFFRNKKYDEAIKYYTQAIELC--PDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLGKFD 200 (606)
T ss_pred hhhhhcccHHHHHHHHHHHHhcC--CCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccHH
Confidence 44458999999999999999876 666899999999999999999999998877654443 5555556788888888
Q ss_pred HHHHHHHHHH-HcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHH-cC--CCCCHHHHHHHHHHHHh-----------
Q 011323 110 GAFQVLRLVQ-EAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN-AG--IEPNVHTYGALIDGCAK----------- 174 (488)
Q Consensus 110 ~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~--~~~~~~~~~~l~~~~~~----------- 174 (488)
+|+.=..-.. -.|+. +..+--.+=+.+-+ .|.+-.++-.+ .+ +-|+.....+....+..
T Consensus 201 eal~D~tv~ci~~~F~-n~s~~~~~eR~Lkk-----~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ 274 (606)
T KOG0547|consen 201 EALFDVTVLCILEGFQ-NASIEPMAERVLKK-----QAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSD 274 (606)
T ss_pred HHHHhhhHHHHhhhcc-cchhHHHHHHHHHH-----HHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCc
Confidence 8754332221 11211 11111111111111 12222222111 11 23444444444333321
Q ss_pred --------------cC---CHHHHHHHHHHHHhC-CCCC-----C------HhHHHHHHHHHHccCCHHHHHHHHHHHhh
Q 011323 175 --------------AG---QVAKAFGAYGIMRSK-NVKP-----D------RVVFNALITACGQSGAVDRAFDVLAEMNA 225 (488)
Q Consensus 175 --------------~~---~~~~a~~~~~~~~~~-~~~~-----~------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 225 (488)
.+ .+..|.+.+.+-... -..+ | ..+.......+.-.|+.-.|..-|+..+.
T Consensus 275 ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~ 354 (606)
T KOG0547|consen 275 KSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIK 354 (606)
T ss_pred cchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHh
Confidence 01 122222222221100 0011 1 11111112223446888889999988876
Q ss_pred CCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHH
Q 011323 226 EVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 305 (488)
Q Consensus 226 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 305 (488)
..+ .+...|.-+...|....+.++....|....+.+ +.++.+|..-...+.-.+++++|..=|++.+...+. +..
T Consensus 355 l~~---~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe-~~~ 429 (606)
T KOG0547|consen 355 LDP---AFNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPE-NAY 429 (606)
T ss_pred cCc---ccchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChh-hhH
Confidence 421 122237778888999999999999999999987 667888888888888889999999999998886543 555
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-----CCHHHH--H
Q 011323 306 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK-----PTVSTM--N 378 (488)
Q Consensus 306 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-----~~~~~~--~ 378 (488)
.|-.+.-+..+.++++++...|++.++. ++-.+..|+.....+...++++.|.+.|+..++.... .+...+ -
T Consensus 430 ~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~K 508 (606)
T KOG0547|consen 430 AYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHK 508 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhh
Confidence 6666666667888999999999999886 5667899999999999999999999999998865311 112111 1
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 011323 379 ALITALCDGDQLPKTMEVLSDMKSLGLCP-NTITYSILLVACERKDDVEVGLMLLSQAKE 437 (488)
Q Consensus 379 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 437 (488)
.++..- =.+++..|..++++..+. .| ....|..|...-...|+.++|+++|++...
T Consensus 509 a~l~~q-wk~d~~~a~~Ll~KA~e~--Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 509 ALLVLQ-WKEDINQAENLLRKAIEL--DPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred hHhhhc-hhhhHHHHHHHHHHHHcc--CchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 222111 238899999999999884 44 467899999999999999999999987664
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.64 E-value=7.4e-10 Score=100.95 Aligned_cols=434 Identities=10% Similarity=0.040 Sum_probs=344.1
Q ss_pred chhHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCC--------CCCHHHHHH
Q 011323 26 SEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--------NPTLSTFNM 97 (488)
Q Consensus 26 ~~~~~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--------~~~~~~~~~ 97 (488)
+..+..|.+|.+..-|+.|..+++...+.- |.+..+......+--.+|+.+...++.++.. ..+...|..
T Consensus 407 p~s~dLwlAlarLetYenAkkvLNkaRe~i--ptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~ 484 (913)
T KOG0495|consen 407 PQSMDLWLALARLETYENAKKVLNKAREII--PTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLK 484 (913)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhhC--CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHH
Confidence 456788999999999999999999998764 6666666666666667788888777776543 457778888
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 011323 98 LMSVCASSKDSEGAFQVLRLVQEAGLKAD--CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKA 175 (488)
Q Consensus 98 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 175 (488)
=...|-..|..-.+..+.......|+... -.||..-.+.|.+.+-++-|..+|...++. .+-+...|......--..
T Consensus 485 eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~h 563 (913)
T KOG0495|consen 485 EAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSH 563 (913)
T ss_pred HHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhc
Confidence 88889899999999999999988886543 458999999999999999999999998876 244567788877777788
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCCHHHHHH
Q 011323 176 GQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRARE 255 (488)
Q Consensus 176 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 255 (488)
|..++...+|++.... ++-....|....+.+-..|++..|..++.+..... +.+...|...+..-....+++.|..
T Consensus 564 gt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~---pnseeiwlaavKle~en~e~eraR~ 639 (913)
T KOG0495|consen 564 GTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN---PNSEEIWLAAVKLEFENDELERARD 639 (913)
T ss_pred CcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC---CCcHHHHHHHHHHhhccccHHHHHH
Confidence 9999999999999876 34456677777788888999999999999987642 2245677788888899999999999
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 011323 256 VYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 335 (488)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 335 (488)
+|.+.... .++..+|.--+...--.+..++|.+++++..+.-.. -.-.|..+.+.+-+.++.+.|.+.|..-.+. +
T Consensus 640 llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~-f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-c 715 (913)
T KOG0495|consen 640 LLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKSFPD-FHKLWLMLGQIEEQMENIEMAREAYLQGTKK-C 715 (913)
T ss_pred HHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCc-hHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-C
Confidence 99998874 567778877777777789999999999998886322 3456777788889999999999988876665 4
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 011323 336 SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 415 (488)
Q Consensus 336 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l 415 (488)
+-.+..|-.+...-.+.|.+-.|..++++.+-.+ +.+...|-..|+.-.+.|..+.|..+..+.++. ++-+...|..-
T Consensus 716 P~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEa 793 (913)
T KOG0495|consen 716 PNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEA 793 (913)
T ss_pred CCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHH
Confidence 5567788888888888999999999999988766 678899999999999999999999999888765 56677888888
Q ss_pred HHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHh--hcHHHHHHHHHHhhhccCCCCc
Q 011323 416 LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS--RRYEKARTLNEHVLSFNSGRPQ 477 (488)
Q Consensus 416 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~--~~~~~a~~~~~~~~~~~~~~~~ 477 (488)
|....+.++-......+++. .-|..+.-++-.++. +++++|.+.+++....+|...+
T Consensus 794 I~le~~~~rkTks~DALkkc-----e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD 852 (913)
T KOG0495|consen 794 IWLEPRPQRKTKSIDALKKC-----EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGD 852 (913)
T ss_pred HHhccCcccchHHHHHHHhc-----cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccch
Confidence 88888887755555555433 234444445554443 3899999999999877776544
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.3e-13 Score=122.69 Aligned_cols=290 Identities=13% Similarity=0.067 Sum_probs=212.3
Q ss_pred CHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHhHHHHHHHHHHccCCHHHHHHH
Q 011323 142 KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN--VKPDRVVFNALITACGQSGAVDRAFDV 219 (488)
Q Consensus 142 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~g~~~~a~~~ 219 (488)
+..+|...|..+.+. +.-+..+...+.++|...+++++|.++|+.+.+.. ..-+...|.+.+--+-+. -++..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHH
Confidence 457788888885544 23345666788889999999999999999887652 012455666665433221 12222
Q ss_pred H-HHHhhCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhC
Q 011323 220 L-AEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298 (488)
Q Consensus 220 ~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 298 (488)
+ +++... . +-...+|..+.++|.-.++.+.|++.|+...+.+ +....+|+.+..-+.....+|.|...|+..+..
T Consensus 409 Laq~Li~~-~--~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~ 484 (638)
T KOG1126|consen 409 LAQDLIDT-D--PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGV 484 (638)
T ss_pred HHHHHHhh-C--CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcC
Confidence 2 222221 1 2234589999999999999999999999988875 446788888888888888999999999887765
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 011323 299 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMN 378 (488)
Q Consensus 299 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 378 (488)
... +...|--+...|.+.++++.|+-.|+.+.+.+ +-+.+....+...+.+.|+.++|+.+++++...+ +.|+..--
T Consensus 485 ~~r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~ 561 (638)
T KOG1126|consen 485 DPR-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKY 561 (638)
T ss_pred Cch-hhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHH
Confidence 332 33445556778899999999999999988876 4466777778888889999999999999988776 34555555
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcH
Q 011323 379 ALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL 444 (488)
Q Consensus 379 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 444 (488)
..+..+...++.++|+..++++++. ++-+...|..+...|.+.|+.+.|+.-|..+.+...++..
T Consensus 562 ~~~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 562 HRASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 5667777889999999999999884 3444667888889999999999999999888875544443
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.62 E-value=8.7e-12 Score=106.86 Aligned_cols=287 Identities=16% Similarity=0.122 Sum_probs=170.8
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 011323 105 SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGA 184 (488)
Q Consensus 105 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 184 (488)
.|++.+|+.+..+-.+.+ +-....|..-..+.-+.|+.+.+-.++.+..+....++....-+..+.....|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 477777777777766655 3334455556666667777777777777776653355556666666777777777777777
Q ss_pred HHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCC-----cchHHHHHHHHHhcCCHHHHHHHHHH
Q 011323 185 YGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD-----HITIGALMKACANAGQVDRAREVYKM 259 (488)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~ 259 (488)
+.++.+.+ +..+.......++|.+.|++.....++..+.+.+..-++. ..+|..+++-....+..+.-...++.
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 77776664 4456666777777777777777777777776652111111 12345555544444444554455555
Q ss_pred HHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccH
Q 011323 260 IHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGI 339 (488)
Q Consensus 260 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 339 (488)
.... .+.++..-..++.-+.+.|+.++|.++..+..+++..|. ...+ -.+.+-++.+.-.+..+...+.. +.++
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~~~-~~~l~~~d~~~l~k~~e~~l~~h-~~~p 328 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LCRL-IPRLRPGDPEPLIKAAEKWLKQH-PEDP 328 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HHHH-HhhcCCCCchHHHHHHHHHHHhC-CCCh
Confidence 5443 244455556666666666666666666666666555443 1111 12334455555555555444432 3344
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 011323 340 ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMK 401 (488)
Q Consensus 340 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 401 (488)
..+.+|...|.+.+.|.+|...|+...+. .|+..+|+.+..++.+.|+..+|.++.++..
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 56666666666666666666666655443 4666666666666666666666666666544
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.3e-10 Score=103.93 Aligned_cols=413 Identities=16% Similarity=0.158 Sum_probs=232.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHhcCChhHHH
Q 011323 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAF 112 (488)
Q Consensus 33 ~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 112 (488)
..++++|++..-...|+..+..=......-+....+.+..+.+-.+-+.++|++..+-++..-+-.+..++..+++++|-
T Consensus 110 q~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~d~~~eaa 189 (835)
T KOG2047|consen 110 QFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKSDRLDEAA 189 (835)
T ss_pred HHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhccchHHHH
Confidence 34457888888888888887764444444555566666777777777888888777767777777778888888888877
Q ss_pred HHHHHHHHcC------CCCCHHHHHHHHHHHHHcCCHhH---HHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHH
Q 011323 113 QVLRLVQEAG------LKADCKLYTTLITTCAKSGKVDA---MFEVFHEMVNAGIEPN--VHTYGALIDGCAKAGQVAKA 181 (488)
Q Consensus 113 ~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a 181 (488)
+.+....... .+.+...|..+....++.-+.-. ...++..+... -+| ...|++|..-|.+.|++++|
T Consensus 190 ~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYYIr~g~~eka 267 (835)
T KOG2047|consen 190 QRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADYYIRSGLFEKA 267 (835)
T ss_pred HHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHHHHHhhhhHHH
Confidence 7776655321 12333344444444433322211 12222222221 222 22345555555555555555
Q ss_pred HHHHHHHHhCCCCCCHhHHHHHHHHHH-----------------------------------------------------
Q 011323 182 FGAYGIMRSKNVKPDRVVFNALITACG----------------------------------------------------- 208 (488)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~ll~~~~----------------------------------------------------- 208 (488)
.++|++.... ..+..-|..+..+|+
T Consensus 268 rDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn 345 (835)
T KOG2047|consen 268 RDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQN 345 (835)
T ss_pred HHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcC
Confidence 5555444332 111222222222211
Q ss_pred -------------ccCCHHHHHHHHHHHhhCCCCCCC---CcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC---H
Q 011323 209 -------------QSGAVDRAFDVLAEMNAEVHPVDP---DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT---P 269 (488)
Q Consensus 209 -------------~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~ 269 (488)
..|+..+...++.+......+..+ -...|..+.+.|-..|+++.|..+|++..+...+.- .
T Consensus 346 ~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa 425 (835)
T KOG2047|consen 346 PHNVEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLA 425 (835)
T ss_pred CccHHHHHhhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHH
Confidence 123344444555554442111111 123467777888888888888888888876543322 3
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHhCCCC----------C-------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011323 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVI----------P-------DEVFLSALIDFAGHAGKVEAAFEILQEAKN 332 (488)
Q Consensus 270 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----------~-------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 332 (488)
.+|..-...-.++.+++.|.++.+........ | +...|+..++.--..|-++....+++.+.+
T Consensus 426 ~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriid 505 (835)
T KOG2047|consen 426 EVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIID 505 (835)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 45555566666777888888887765432111 1 123344445555556778888888888887
Q ss_pred CCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHc---CCChhHHHHHHHHHHhCCCCCC
Q 011323 333 QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV-STMNALITALCD---GDQLPKTMEVLSDMKSLGLCPN 408 (488)
Q Consensus 333 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~p~ 408 (488)
..+. ++...-.....+..+.-++++.+++++-+..-..|+. ..|+..+.-+.+ ...++.|..+|++.++ |.+|.
T Consensus 506 Lria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~ 583 (835)
T KOG2047|consen 506 LRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPE 583 (835)
T ss_pred HhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHH
Confidence 6543 3444434444455666778888888776654334443 456655544442 3467889999998888 56665
Q ss_pred HHH--HHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcH--HHHHHHHH
Q 011323 409 TIT--YSILLVACERKDDVEVGLMLLSQAKEDGVIPNL--VMFKCIIG 452 (488)
Q Consensus 409 ~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~li~ 452 (488)
..- |-.....-.+.|....|+.+++++... +++.. ..|+..|.
T Consensus 584 ~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~ 630 (835)
T KOG2047|consen 584 HAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIK 630 (835)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHH
Confidence 332 233333344567778888888876543 33222 24555553
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.6e-12 Score=117.00 Aligned_cols=199 Identities=12% Similarity=0.039 Sum_probs=91.4
Q ss_pred CHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCC-CcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHH
Q 011323 196 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDP-DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI 274 (488)
Q Consensus 196 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 274 (488)
.+.+|..+..+|.-.++.+.|++.|++..+- +| ..++|+.+..-+.....+|.|...|+...... +-+-..|.-
T Consensus 420 sPesWca~GNcfSLQkdh~~Aik~f~RAiQl----dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~-~rhYnAwYG 494 (638)
T KOG1126|consen 420 SPESWCALGNCFSLQKDHDTAIKCFKRAIQL----DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD-PRHYNAWYG 494 (638)
T ss_pred CcHHHHHhcchhhhhhHHHHHHHHHHHhhcc----CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-chhhHHHHh
Confidence 3445555555555555555555555554432 22 33444444444444555555555555444322 111122223
Q ss_pred HHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCC
Q 011323 275 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 354 (488)
Q Consensus 275 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 354 (488)
+.-.|.+.++++.|+-.|++..+-++. +.+....+...+.+.|+.++|+.+++++...... |+..--.-+..+...++
T Consensus 495 lG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~~il~~~~~ 572 (638)
T KOG1126|consen 495 LGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHRASILFSLGR 572 (638)
T ss_pred hhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHHHHHHHhhcc
Confidence 344455555555555555555444333 4444444444555555555555555555444322 22222223334444555
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 011323 355 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 402 (488)
Q Consensus 355 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 402 (488)
+++|...++++++.- +.+...|..+...|.+.|+.+.|+.-|..+.+
T Consensus 573 ~~eal~~LEeLk~~v-P~es~v~~llgki~k~~~~~~~Al~~f~~A~~ 619 (638)
T KOG1126|consen 573 YVEALQELEELKELV-PQESSVFALLGKIYKRLGNTDLALLHFSWALD 619 (638)
T ss_pred hHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHHccchHHHHhhHHHhc
Confidence 555555555554431 22334444445555555555555555555544
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.58 E-value=5.4e-11 Score=102.08 Aligned_cols=287 Identities=12% Similarity=0.040 Sum_probs=192.3
Q ss_pred cCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHH
Q 011323 140 SGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDV 219 (488)
Q Consensus 140 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 219 (488)
.|++.+|++...+-.+.+ +.....|..-..+--..|+.+.+-+++.+..+..-.++....-+..+.....|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 478888888877766665 3334455555666677788888888887777653244555566666777777888888877
Q ss_pred HHHHhhCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHH-------HHHHHHHHHHccCChHHHHHHH
Q 011323 220 LAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE-------VYTIAINCCSQTGDWEFACSVY 292 (488)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~a~~~~ 292 (488)
++++.... +..........++|.+.|++.....++..+.+.+.-.++. ++..+++-....+..+.-...+
T Consensus 176 v~~ll~~~---pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W 252 (400)
T COG3071 176 VDQLLEMT---PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWW 252 (400)
T ss_pred HHHHHHhC---cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHH
Confidence 77776541 2234466677778888888888888888887777555432 4555666555555555555566
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 011323 293 DDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 372 (488)
Q Consensus 293 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 372 (488)
+....+ ..-++..-.+++.-+.+.|+.++|.++..+..+++..|+ . ...-.+.+.++.+.-.+..+.-.... +.
T Consensus 253 ~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L-~~~~~~l~~~d~~~l~k~~e~~l~~h-~~ 326 (400)
T COG3071 253 KNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---L-CRLIPRLRPGDPEPLIKAAEKWLKQH-PE 326 (400)
T ss_pred HhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---H-HHHHhhcCCCCchHHHHHHHHHHHhC-CC
Confidence 655543 233556666777777788888888888877777765554 1 11223456666666666666554332 34
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHc
Q 011323 373 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 438 (488)
Q Consensus 373 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 438 (488)
++..+.+|...|.+.+.+.+|...|+...+ ..|+..+|..+..++.+.|+..+|.+..++....
T Consensus 327 ~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 327 DPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred ChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 456777777788888888888888887665 4678888888888888888888888777766543
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.53 E-value=6.9e-09 Score=93.73 Aligned_cols=423 Identities=14% Similarity=0.106 Sum_probs=252.5
Q ss_pred hhHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCCCCCHHHHHH--HHHHH--
Q 011323 27 EQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNM--LMSVC-- 102 (488)
Q Consensus 27 ~~~~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--l~~~~-- 102 (488)
.-+...+...++|++++|.+....++..+ |++......-.......+.+++|+.+.+.-... .+++. +=.+|
T Consensus 14 ~l~t~ln~~~~~~e~e~a~k~~~Kil~~~--pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~ 89 (652)
T KOG2376|consen 14 ALLTDLNRHGKNGEYEEAVKTANKILSIV--PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCE 89 (652)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHhcC--CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHH
Confidence 34455677779999999999999999877 666666555666677789999999887765421 12222 23444
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHH
Q 011323 103 ASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEP-NVHTYGALIDGCAKAGQVAKA 181 (488)
Q Consensus 103 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a 181 (488)
.+.+..++|+..++... +.+..+...-.+.+.+.|++++|.++|+.+.+.+.+- +...-..++.+-. -..+
T Consensus 90 Yrlnk~Dealk~~~~~~----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a----~l~~ 161 (652)
T KOG2376|consen 90 YRLNKLDEALKTLKGLD----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA----ALQV 161 (652)
T ss_pred HHcccHHHHHHHHhccc----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH----hhhH
Confidence 46889999999888322 2344577777888899999999999999998764321 1111111111110 0011
Q ss_pred HHHHHHHHhCCCCCCHhHHHHH---HHHHHccCCHHHHHHHHHHHhh--------CCCC---CCCCc-chHHHHHHHHHh
Q 011323 182 FGAYGIMRSKNVKPDRVVFNAL---ITACGQSGAVDRAFDVLAEMNA--------EVHP---VDPDH-ITIGALMKACAN 246 (488)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~l---l~~~~~~g~~~~a~~~~~~~~~--------~~~~---~~~~~-~~~~~l~~~~~~ 246 (488)
++ +......| ..+|..+ .-.+...|++.+|+++++.... ...+ +.... ..-..+..++-.
T Consensus 162 -~~---~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~ 236 (652)
T KOG2376|consen 162 -QL---LQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQL 236 (652)
T ss_pred -HH---HHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHH
Confidence 11 22222222 2233333 3345567888888888777611 1100 00000 012234455667
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHH----HHHHHHHHHcc----------------------------------------
Q 011323 247 AGQVDRAREVYKMIHKYNIKGTPEV----YTIAINCCSQT---------------------------------------- 282 (488)
Q Consensus 247 ~~~~~~a~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~---------------------------------------- 282 (488)
.|+-++|..++..+.+... +|... -|.++..-...
T Consensus 237 ~Gqt~ea~~iy~~~i~~~~-~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~l 315 (652)
T KOG2376|consen 237 QGQTAEASSIYVDIIKRNP-ADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNAL 315 (652)
T ss_pred hcchHHHHHHHHHHHHhcC-CCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888888888877776653 22211 11111111000
Q ss_pred -----CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCH
Q 011323 283 -----GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG--HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 355 (488)
Q Consensus 283 -----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 355 (488)
+.-+.+.++.... .+..|. ..+.+++..+. +......+.+++...-+....-...+.-..+......|++
T Consensus 316 L~l~tnk~~q~r~~~a~l--p~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~ 392 (652)
T KOG2376|consen 316 LALFTNKMDQVRELSASL--PGMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNP 392 (652)
T ss_pred HHHHhhhHHHHHHHHHhC--CccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCH
Confidence 0111111111110 112222 33444444332 2234677888887777765444466777778888999999
Q ss_pred HHHHHHHH--------HHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhC--CCCCC----HHHHHHHHHHHhh
Q 011323 356 QKALELYE--------HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL--GLCPN----TITYSILLVACER 421 (488)
Q Consensus 356 ~~a~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~p~----~~~~~~l~~~~~~ 421 (488)
+.|.+++. .+.+.+..| .+...++..+.+.++.+.|..++.+.... .-.+. ..++.-++..-.+
T Consensus 393 ~~A~~il~~~~~~~~ss~~~~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr 470 (652)
T KOG2376|consen 393 EVALEILSLFLESWKSSILEAKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLR 470 (652)
T ss_pred HHHHHHHHHHhhhhhhhhhhhccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHh
Confidence 99999999 555544344 55566777788888887788877776431 01122 2233344444567
Q ss_pred cCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhh-cHHHHHHHHHHhhhccC
Q 011323 422 KDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR-RYEKARTLNEHVLSFNS 473 (488)
Q Consensus 422 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~~~~a~~~~~~~~~~~~ 473 (488)
.|+.++|..+++++.+. ..+|..+...++.++.+ +.++|..+.+.+.....
T Consensus 471 ~G~~~ea~s~leel~k~-n~~d~~~l~~lV~a~~~~d~eka~~l~k~L~p~~~ 522 (652)
T KOG2376|consen 471 HGNEEEASSLLEELVKF-NPNDTDLLVQLVTAYARLDPEKAESLSKKLPPLKG 522 (652)
T ss_pred cCchHHHHHHHHHHHHh-CCchHHHHHHHHHHHHhcCHHHHHHHhhcCCCccc
Confidence 89999999999999985 34678888999999998 99999999887654433
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.1e-10 Score=104.46 Aligned_cols=375 Identities=11% Similarity=0.048 Sum_probs=247.8
Q ss_pred HHHhhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHhc-CChhHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHcCCHhHH
Q 011323 69 NVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASS-KDSEGAFQVLRLVQEA-GLKADCKLYTTLITTCAKSGKVDAM 146 (488)
Q Consensus 69 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a 146 (488)
.++....+.++|...|..+...|+.++.++....... -..++-+++++.+.-. ....+......+.....-...-+..
T Consensus 149 k~y~al~n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~ 228 (611)
T KOG1173|consen 149 KVYVALDNREEARDKYKEALLADAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEES 228 (611)
T ss_pred ehhhhhccHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccc
Confidence 3445556677788888777767777766655433221 1112222333211000 0011222222222221111100111
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhC
Q 011323 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE 226 (488)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 226 (488)
...-.+..-.|...+.........-+...+++.+..++.+...+.. ++....+-.-|.++...|+..+-..+=.++...
T Consensus 229 ~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~ 307 (611)
T KOG1173|consen 229 LTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL 307 (611)
T ss_pred cccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh
Confidence 1111111112234455666666667777889999999999888764 667777777777888888877777776777653
Q ss_pred CCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhC--CCCCCH
Q 011323 227 VHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK--GVIPDE 304 (488)
Q Consensus 227 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~ 304 (488)
.+....+|-++.-.|...|..++|.+.|.+....+ +.-...|-.+...|.-.|..++|+..+...-+. |..
T Consensus 308 ---yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~h--- 380 (611)
T KOG1173|consen 308 ---YPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCH--- 380 (611)
T ss_pred ---CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCc---
Confidence 23345678888888888899999999998887665 223457888888888888889888888766553 221
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----C--CCCCHHHHH
Q 011323 305 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI----K--LKPTVSTMN 378 (488)
Q Consensus 305 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~--~~~~~~~~~ 378 (488)
.-+--+.--|.+.+..+.|.++|.+..... +.|+..++-+.-...+.+.+.+|...|+..... + ...-..+++
T Consensus 381 lP~LYlgmey~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~ 459 (611)
T KOG1173|consen 381 LPSLYLGMEYMRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLN 459 (611)
T ss_pred chHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHH
Confidence 113334445777889999999999888764 567888888888888888999999988877621 1 011345677
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHh
Q 011323 379 ALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS 455 (488)
Q Consensus 379 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 455 (488)
.|..+|.+.+.+++|+..+++.+.. .+.+..++.++.-.+...|+++.|...|.+... +.|+..+...++..+.
T Consensus 460 NLGH~~Rkl~~~~eAI~~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 460 NLGHAYRKLNKYEEAIDYYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLAI 533 (611)
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHHH
Confidence 8888999999999999999998875 366788899999999999999999999988775 7788877777776543
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.8e-10 Score=103.13 Aligned_cols=288 Identities=14% Similarity=0.048 Sum_probs=225.3
Q ss_pred CCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHH
Q 011323 123 LKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202 (488)
Q Consensus 123 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 202 (488)
...+......-.+-+...+++.+..++.+.+.+.. +++...+..-|.++...|+..+-..+=.++.+.- +-.+.+|-+
T Consensus 240 l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~a 317 (611)
T KOG1173|consen 240 LAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFA 317 (611)
T ss_pred hhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhh
Confidence 35566667777778888899999999999988764 5677777777778889999888888878887763 556788999
Q ss_pred HHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcc
Q 011323 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT 282 (488)
Q Consensus 203 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 282 (488)
+.--|...|...+|.+.|.....-++.. ...|......|+-.|..++|...+..+.+.- +.....+.-+.--|.+.
T Consensus 318 Vg~YYl~i~k~seARry~SKat~lD~~f---gpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t 393 (611)
T KOG1173|consen 318 VGCYYLMIGKYSEARRYFSKATTLDPTF---GPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRT 393 (611)
T ss_pred HHHHHHHhcCcHHHHHHHHHHhhcCccc---cHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHh
Confidence 9988888999999999998876543232 3378888889999999999998887766542 22222333444567888
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC--CccHHHHHHHHHHHHhcCCHH
Q 011323 283 GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ----GI--SVGIISYSSLMGACSNAKNWQ 356 (488)
Q Consensus 283 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~--~~~~~~~~~l~~~~~~~g~~~ 356 (488)
+++..|.+.|.+.....+. |+..++-+.-.....+.+.+|..+|+..... +. .--..+++.|..+|.+.+.++
T Consensus 394 ~n~kLAe~Ff~~A~ai~P~-Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~ 472 (611)
T KOG1173|consen 394 NNLKLAEKFFKQALAIAPS-DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYE 472 (611)
T ss_pred ccHHHHHHHHHHHHhcCCC-cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHH
Confidence 9999999999988776443 7777777777777889999999999877621 11 113457899999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 011323 357 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACE 420 (488)
Q Consensus 357 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 420 (488)
+|+..+++..... +.+..++.++.-.|...|+++.|++.|.+.+- +.|+..+...++..+.
T Consensus 473 eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 473 EAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLAI 533 (611)
T ss_pred HHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHHH
Confidence 9999999998765 67889999999999999999999999999875 6888877777776443
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.48 E-value=1e-09 Score=96.64 Aligned_cols=219 Identities=16% Similarity=0.118 Sum_probs=148.3
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 011323 245 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAF 324 (488)
Q Consensus 245 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 324 (488)
.-.|+.-.+.+-|+........ +...|--+...|....+..+....|.+..+.+.. ++.+|..-.+.+.-.+++++|.
T Consensus 337 fL~g~~~~a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~ 414 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAI 414 (606)
T ss_pred hhcCCchhhhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHH
Confidence 4457777888888887776533 3334666677788888888888888888776554 5566666677777778888888
Q ss_pred HHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCC
Q 011323 325 EILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG 404 (488)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 404 (488)
.-|++.+... +-+...|-.+..+..+.+.++++...|++.++. ++.-+..|+.....+...+++++|.+.|+...+.
T Consensus 415 aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L- 491 (606)
T KOG0547|consen 415 ADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL- 491 (606)
T ss_pred HHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh-
Confidence 8888887764 334556666666667788888888888887754 3455678888888888888888888888887653
Q ss_pred CCCC-------HH--HHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHH-HHHHHHHHHhh--cHHHHHHHHHHhhhcc
Q 011323 405 LCPN-------TI--TYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV-MFKCIIGMCSR--RYEKARTLNEHVLSFN 472 (488)
Q Consensus 405 ~~p~-------~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~--~~~~a~~~~~~~~~~~ 472 (488)
.|+ .. ....++..- -.+++..|..+++++.+. .|... .|-+|...... +.++|.++.|....+-
T Consensus 492 -E~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~--Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lA 567 (606)
T KOG0547|consen 492 -EPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIEL--DPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLA 567 (606)
T ss_pred -ccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHcc--CchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 232 21 122222222 337888888888888774 34433 44455544443 7888888887765543
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=6.3e-11 Score=114.38 Aligned_cols=249 Identities=13% Similarity=0.023 Sum_probs=171.9
Q ss_pred hhHHHHHHHHHhhhCCC--C-CHHHHHHHHHHHH---------hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 011323 73 SQKAIKEAFRFFKLVPN--P-TLSTFNMLMSVCA---------SSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140 (488)
Q Consensus 73 ~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 140 (488)
..+++++|+.+|+++.. | +...|..+..++. ..+++++|...+++..+.+ +.+...+..+...+...
T Consensus 273 ~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~ 351 (553)
T PRK12370 273 TPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIH 351 (553)
T ss_pred CHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHc
Confidence 34678888888887652 3 4445555554433 2345789999999988775 55778888888888899
Q ss_pred CCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HhHHHHHHHHHHccCCHHHHHHH
Q 011323 141 GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD-RVVFNALITACGQSGAVDRAFDV 219 (488)
Q Consensus 141 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~ 219 (488)
|++++|...|++..+.. +.+...+..+...+...|++++|...+++..+.. |+ ...+..++..+...|++++|...
T Consensus 352 g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--P~~~~~~~~~~~~~~~~g~~eeA~~~ 428 (553)
T PRK12370 352 SEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLD--PTRAAAGITKLWITYYHTGIDDAIRL 428 (553)
T ss_pred cCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHhccCHHHHHHH
Confidence 99999999999988874 3356778888889999999999999999988774 33 33334445556678889999999
Q ss_pred HHHHhhCCCCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhC
Q 011323 220 LAEMNAEVHPVDPD-HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298 (488)
Q Consensus 220 ~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 298 (488)
+++..... .|+ ...+..+..++...|++++|...+..+.... +.+....+.+...|...| +.+...++.+.+.
T Consensus 429 ~~~~l~~~---~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~ 502 (553)
T PRK12370 429 GDELRSQH---LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQNS--ERALPTIREFLES 502 (553)
T ss_pred HHHHHHhc---cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhccH--HHHHHHHHHHHHH
Confidence 98876531 233 2345667777888999999999998876543 334455566666777777 4777777776553
Q ss_pred -CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 011323 299 -GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334 (488)
Q Consensus 299 -~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 334 (488)
...+..... .-..+.-.|+.+.+... +++.+.+
T Consensus 503 ~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 503 EQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred hhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 111222222 33445556776666655 7777664
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.4e-10 Score=99.85 Aligned_cols=198 Identities=14% Similarity=0.062 Sum_probs=125.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 011323 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 315 (488)
Q Consensus 236 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 315 (488)
.+..+...+...|++++|...++...+.. +.+...+..+...+...|++++|.+.+++..+.... +...+..+...+.
T Consensus 33 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~ 110 (234)
T TIGR02521 33 IRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGTFLC 110 (234)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHH
Confidence 44555566666666666666666665543 344556666666666677777777777666655432 4455556666666
Q ss_pred hcCCHHHHHHHHHHHHHCCC-CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHH
Q 011323 316 HAGKVEAAFEILQEAKNQGI-SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 394 (488)
Q Consensus 316 ~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 394 (488)
..|++++|...+....+... ......+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.
T Consensus 111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~ 189 (234)
T TIGR02521 111 QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDAR 189 (234)
T ss_pred HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHHH
Confidence 77777777777776665321 2233455556666777777777777777776543 334556666777777777777777
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 011323 395 EVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (488)
Q Consensus 395 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 437 (488)
..+++..+. .+.+...+..+...+...|+.++|..+.+.+.+
T Consensus 190 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 190 AYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 777777654 244555666666677777777777777666554
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.45 E-value=3e-11 Score=113.42 Aligned_cols=252 Identities=16% Similarity=0.162 Sum_probs=139.0
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 011323 114 VLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV 193 (488)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 193 (488)
++-.+...|+.|+..||..+|.-|+..|+.+.|- +|.-|.-...+.+...|+.++.+....++.+.+.
T Consensus 12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk----------- 79 (1088)
T KOG4318|consen 12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK----------- 79 (1088)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------
Confidence 3445555666666666666666666666666665 6666655555555666666666666666655554
Q ss_pred CCCHhHHHHHHHHHHccCCHHH---HHHHHHHHhhC-------------------CCCCCCCcchHHHHHHHHHhcCCHH
Q 011323 194 KPDRVVFNALITACGQSGAVDR---AFDVLAEMNAE-------------------VHPVDPDHITIGALMKACANAGQVD 251 (488)
Q Consensus 194 ~~~~~~~~~ll~~~~~~g~~~~---a~~~~~~~~~~-------------------~~~~~~~~~~~~~l~~~~~~~~~~~ 251 (488)
.|...+|..|..+|...||+.. +.+.+..+... .++.-||. ...+......|.++
T Consensus 80 ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda---~n~illlv~eglwa 156 (1088)
T KOG4318|consen 80 EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDA---ENAILLLVLEGLWA 156 (1088)
T ss_pred CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhH---HHHHHHHHHHHHHH
Confidence 4556666666666666666433 22211111110 01112221 12223334445555
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHccC-ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011323 252 RAREVYKMIHKYNIKGTPEVYTIAINCCSQTG-DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 330 (488)
Q Consensus 252 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 330 (488)
.+++++..+....... +... +++-+.... .+++-..+.+...+ .|+..+|..++.+....|+.+.|..++.+|
T Consensus 157 qllkll~~~Pvsa~~~-p~~v--fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~em 230 (1088)
T KOG4318|consen 157 QLLKLLAKVPVSAWNA-PFQV--FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEM 230 (1088)
T ss_pred HHHHHHhhCCcccccc-hHHH--HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHH
Confidence 5555554443322111 1111 233332222 22222222222222 467777777777777777777777777777
Q ss_pred HHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC
Q 011323 331 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389 (488)
Q Consensus 331 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 389 (488)
.+.|++.+.+-|..++-+ .++...+..+++-|...|+.|+..|+...+..+.+.|.
T Consensus 231 ke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 231 KEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred HHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 777777777766666644 66667777777777777777777777777666666444
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.4e-08 Score=86.42 Aligned_cols=401 Identities=12% Similarity=0.052 Sum_probs=230.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCC------------------CCchHHHHHHHHHHHhhhHHHHHHHHHhhhCCCC-
Q 011323 30 HSYNRLIRQGRISECIDLLEDMERKGL------------------LDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNP- 90 (488)
Q Consensus 30 ~~~~~l~~~g~~~~A~~~~~~~~~~~~------------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~- 90 (488)
+.++.+.+...+..|.+-|....+... .+.+.......+..+...++-+.|......+++.
T Consensus 48 yl~~~~~h~r~yr~a~~~~~~~~~~~~s~~r~s~~~~~s~~~S~~~~~~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~ 127 (564)
T KOG1174|consen 48 YLLNANYKERNYRAALRHFDEIIHKRRLMMRHKNAVLVAIESSYPEFGDAEQRRRAAECYRQIGNTDMAIETLLQVPPTL 127 (564)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHhhHhhccccccccccccccCCCcccHHHHHHHHHHHHHHccchHHHHHHhcCCccc
Confidence 344555567777888888887765431 1333444445556666667777788777777642
Q ss_pred CHHHHHHHHHHHHhcC-ChhH--------------HHHHHHHHHHcCC---------------CCCHHHHHHHHHHHHH-
Q 011323 91 TLSTFNMLMSVCASSK-DSEG--------------AFQVLRLVQEAGL---------------KADCKLYTTLITTCAK- 139 (488)
Q Consensus 91 ~~~~~~~l~~~~~~~~-~~~~--------------a~~~~~~~~~~~~---------------~~~~~~~~~l~~~~~~- 139 (488)
...--+.++..+-+.| +-.+ |++.+.-..+.++ +|...+...-+.+++.
T Consensus 128 r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~ 207 (564)
T KOG1174|consen 128 RSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELGVNGNEINSLVMHAATVPDHFDWLSKWIKALAQM 207 (564)
T ss_pred cchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHhhcchhhhhhhhhheecCCCccHHHHHHHHHHHH
Confidence 2222333333332222 1111 1222222222221 2222222223333332
Q ss_pred -cCCHhHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-hHHHHHHHHHHccCCHHHH
Q 011323 140 -SGKVDAMFEVFHEMVNAG-IEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDR-VVFNALITACGQSGAVDRA 216 (488)
Q Consensus 140 -~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~g~~~~a 216 (488)
.++...+...+-.+.... ++-|+.....+...+...|+.++|...|++.... .|+. .......-.+.+.|+.+..
T Consensus 208 ~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~ 285 (564)
T KOG1174|consen 208 FNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQD 285 (564)
T ss_pred HhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhH
Confidence 344444444444333322 3456667777777888888888888888777654 2322 2222222334556777776
Q ss_pred HHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 011323 217 FDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 296 (488)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 296 (488)
..+...+.... +.....|-.-.......++++.|+.+-++..+.+ +.+...+-.-...+...+++++|.-.|+...
T Consensus 286 ~~L~~~Lf~~~---~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq 361 (564)
T KOG1174|consen 286 SALMDYLFAKV---KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQ 361 (564)
T ss_pred HHHHHHHHhhh---hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHH
Confidence 66666665421 1122223333334455667777777777776655 3445556555667777788888887787766
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHH-HHH-HhcCCHHHHHHHHHHHHhCCCCCC-
Q 011323 297 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GAC-SNAKNWQKALELYEHMKSIKLKPT- 373 (488)
Q Consensus 297 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~-~~~g~~~~a~~~~~~~~~~~~~~~- 373 (488)
...+ .+..+|..++.+|...|.+.+|...-....+. ++.+..++..+. ..+ .....-++|.++++...... |+
T Consensus 362 ~Lap-~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~--P~Y 437 (564)
T KOG1174|consen 362 MLAP-YRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKIN--PIY 437 (564)
T ss_pred hcch-hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccC--Ccc
Confidence 6432 26677888888888888888877776665543 334455555442 222 22333467777777766543 43
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcH
Q 011323 374 VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL 444 (488)
Q Consensus 374 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 444 (488)
....+.+...+...|....++.+++..+. ..||....+.|...+...+.+++|+..|..+.. +.|..
T Consensus 438 ~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr--~dP~~ 504 (564)
T KOG1174|consen 438 TPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR--QDPKS 504 (564)
T ss_pred HHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCccc
Confidence 44556666777778888888888887765 367777888888888888888888888877776 34444
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.6e-11 Score=100.21 Aligned_cols=228 Identities=15% Similarity=0.011 Sum_probs=100.0
Q ss_pred HHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc
Q 011323 202 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ 281 (488)
Q Consensus 202 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 281 (488)
.+.++|.+.|.+.+|.+.|+....+ .|-..||..+-++|.+..++..|+.++..-.+. .+.+.....-+...+-.
T Consensus 228 Q~gkCylrLgm~r~AekqlqssL~q----~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 228 QMGKCYLRLGMPRRAEKQLQSSLTQ----FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHhcChhhhHHHHHHHhhc----CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHH
Confidence 3444444444444444444444332 222224444444444444444444444444432 12333333334444444
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHH
Q 011323 282 TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 361 (488)
Q Consensus 282 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 361 (488)
.++.++|.++++...+.... ++.....+...|.-.++++-|+.+++++.+.|+. ++..|+.+.-+|.-.++++-+..-
T Consensus 303 m~~~~~a~~lYk~vlk~~~~-nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLHPI-NVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHhHHHHHHHHHHHHhcCCc-cceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHH
Confidence 44444454544444443222 3333444444444444455555555555444422 344444444444444455544444
Q ss_pred HHHHHhCCCCCC--HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 011323 362 YEHMKSIKLKPT--VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (488)
Q Consensus 362 ~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 437 (488)
|++....--.|+ ..+|-.+....+..|++.-|.+.|+-.+..+ ......++.|.-.-.+.|++++|..++..+..
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 444433211122 2334444444444455555555555444321 22234444444444455555555555544443
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.2e-09 Score=100.20 Aligned_cols=291 Identities=13% Similarity=0.118 Sum_probs=155.7
Q ss_pred HHHHhhhHHHHHHHHHhhhCCC---CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc----
Q 011323 68 FNVCKSQKAIKEAFRFFKLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS---- 140 (488)
Q Consensus 68 ~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---- 140 (488)
..++...|++++|+++++...+ ............+.+.|+.++|..++..+.+++ |.+..-|..+..+..-.
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhcccc
Confidence 3444555566666666554331 223344455566666677777777777776664 33444444444444222
Q ss_pred -CCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHH
Q 011323 141 -GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVA-KAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFD 218 (488)
Q Consensus 141 -~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 218 (488)
.+.+...++++++... -|.......+.-.+.....+. .+...+..+...|++ .+|+.+-..|.......-..+
T Consensus 90 ~~~~~~~~~~y~~l~~~--yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~ 164 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEK--YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIES 164 (517)
T ss_pred cccHHHHHHHHHHHHHh--CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHH
Confidence 2345556666666544 233333333322222222232 334445555556643 344444444444444444444
Q ss_pred HHHHHhhCC------------CCCCCCc--chHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCC
Q 011323 219 VLAEMNAEV------------HPVDPDH--ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD 284 (488)
Q Consensus 219 ~~~~~~~~~------------~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 284 (488)
++....... ..-.|.. .++..+...|...|++++|+++++...++. |..+..|..-...+-+.|+
T Consensus 165 l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~G~ 243 (517)
T PF12569_consen 165 LVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHAGD 243 (517)
T ss_pred HHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHCCC
Confidence 444432210 0011222 233444556667777777777777776664 3446667777777777777
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccH--------HHHHHHHHHHHhcCCHH
Q 011323 285 WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGI--------ISYSSLMGACSNAKNWQ 356 (488)
Q Consensus 285 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--------~~~~~l~~~~~~~g~~~ 356 (488)
+.+|.+.++........ |...-+-.+..+.+.|+.++|.+++..+.+.+..|.. ........+|.+.|++.
T Consensus 244 ~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~ 322 (517)
T PF12569_consen 244 LKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYG 322 (517)
T ss_pred HHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 77777777777666554 6666666666677777777777777776655432211 11233456666777777
Q ss_pred HHHHHHHHHH
Q 011323 357 KALELYEHMK 366 (488)
Q Consensus 357 ~a~~~~~~~~ 366 (488)
.|.+.|..+.
T Consensus 323 ~ALk~~~~v~ 332 (517)
T PF12569_consen 323 LALKRFHAVL 332 (517)
T ss_pred HHHHHHHHHH
Confidence 7766655544
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=4.9e-10 Score=108.28 Aligned_cols=260 Identities=10% Similarity=0.037 Sum_probs=170.6
Q ss_pred CCCHhHHHHHHHHHHc-----cCCHHHHHHHHHHHhhCCCCCCCCc-chHHHHHHHHH---------hcCCHHHHHHHHH
Q 011323 194 KPDRVVFNALITACGQ-----SGAVDRAFDVLAEMNAEVHPVDPDH-ITIGALMKACA---------NAGQVDRAREVYK 258 (488)
Q Consensus 194 ~~~~~~~~~ll~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~---------~~~~~~~a~~~~~ 258 (488)
..+...|...+++... .++.++|...|++.... .|+. ..+..+..++. ..+++++|...++
T Consensus 253 ~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l----dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~ 328 (553)
T PRK12370 253 LNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM----SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAI 328 (553)
T ss_pred CCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc----CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHH
Confidence 3455555555554311 23467888888888764 4443 34444444333 2244788888888
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcc
Q 011323 259 MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVG 338 (488)
Q Consensus 259 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 338 (488)
++.+.+ +.++..+..+...+...|++++|...+++..+.++. +...+..+..++...|++++|...+++..+.... +
T Consensus 329 ~Al~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~ 405 (553)
T PRK12370 329 KATELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-R 405 (553)
T ss_pred HHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-C
Confidence 888876 567778888888888888899999999888887544 5667777888888889999999999888886533 2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC-HHHHHHHHH
Q 011323 339 IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN-TITYSILLV 417 (488)
Q Consensus 339 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~ 417 (488)
...+..++..+...|++++|...++++.....+.+...+..+..++...|+.++|...++++... .|+ ......+..
T Consensus 406 ~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~ 483 (553)
T PRK12370 406 AAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYA 483 (553)
T ss_pred hhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHH
Confidence 33333444456667888888888888775532224555677777888889999999888887653 344 333445555
Q ss_pred HHhhcCCHHHHHHHHHHHHHc-CCCCcHHHHHHHHHHHhhcHHHHHHH
Q 011323 418 ACERKDDVEVGLMLLSQAKED-GVIPNLVMFKCIIGMCSRRYEKARTL 464 (488)
Q Consensus 418 ~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~a~~~ 464 (488)
.+...|+ .+...++.+.+. .-.+....+..++.++..+-+.+...
T Consensus 484 ~~~~~g~--~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 529 (553)
T PRK12370 484 EYCQNSE--RALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW 529 (553)
T ss_pred HHhccHH--HHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH
Confidence 6666663 677767666554 33344444466666655434444444
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.2e-10 Score=97.63 Aligned_cols=196 Identities=16% Similarity=0.107 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHH
Q 011323 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208 (488)
Q Consensus 129 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 208 (488)
.+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..... +.+...+..+...+.
T Consensus 33 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~ 110 (234)
T TIGR02521 33 IRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFLC 110 (234)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHH
Confidence 34444444444555555555554444331 2223444444444445555555555554444432 223334444444444
Q ss_pred ccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHH
Q 011323 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA 288 (488)
Q Consensus 209 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 288 (488)
..|++++|.+.+++..... ........+..+...+...|++++|...+....... +.+...+..+...+...|++++|
T Consensus 111 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 111 QQGKYEQAMQQFEQAIEDP-LYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HcccHHHHHHHHHHHHhcc-ccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHH
Confidence 4555555555554443310 000111223333344444444444444444444332 22333444444444444444444
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011323 289 CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329 (488)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 329 (488)
...+++..+. ...+...+..+...+...|+.+.|..+.+.
T Consensus 189 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 228 (234)
T TIGR02521 189 RAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQ 228 (234)
T ss_pred HHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 4444444433 112233333334444444444444444433
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.9e-08 Score=92.00 Aligned_cols=387 Identities=12% Similarity=0.085 Sum_probs=234.4
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHhcCChhHHHH
Q 011323 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQ 113 (488)
Q Consensus 37 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~ 113 (488)
..+++...+++.+.+++.. |.......+.+-.....|+.++|........ ..+.++|..+.-.+-..+++++|+.
T Consensus 19 E~kQYkkgLK~~~~iL~k~--~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiK 96 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILKKF--PEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIK 96 (700)
T ss_pred HHHHHHhHHHHHHHHHHhC--CccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHH
Confidence 5788999999999999854 6666666666666677788999998887765 3566789988888888899999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-
Q 011323 114 VLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN- 192 (488)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~- 192 (488)
.|+.....+ +.|...+..+.-.-++.|+++........+.+.. +.....|..+..++.-.|+...|..+++...+..
T Consensus 97 cy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~ 174 (700)
T KOG1156|consen 97 CYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQN 174 (700)
T ss_pred HHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 999998876 6678888888888889999999888888887762 2245678888888888999999999999887664
Q ss_pred CCCCHhHHHHHH------HHHHccCCHHHHHHHHHHHhhCCCCCCCCcch-HHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 011323 193 VKPDRVVFNALI------TACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT-IGALMKACANAGQVDRAREVYKMIHKYNI 265 (488)
Q Consensus 193 ~~~~~~~~~~ll------~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 265 (488)
-.|+...+.... ....+.|..++|.+.+...... ..|... -.+-...+.+.+++++|..++..+....
T Consensus 175 ~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~----i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn- 249 (700)
T KOG1156|consen 175 TSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ----IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN- 249 (700)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH----HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC-
Confidence 246666654433 2345678888888887765442 123222 2345567788999999999999998864
Q ss_pred CCCHHHHHHHHHHHHccCChHHHH-HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHH
Q 011323 266 KGTPEVYTIAINCCSQTGDWEFAC-SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSS 344 (488)
Q Consensus 266 ~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 344 (488)
+.+..-|..+..++.+-.+..++. .+|....+.-.. .......=+.......-.+...+++....+.|+++ ++..
T Consensus 250 Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r-~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~d 325 (700)
T KOG1156|consen 250 PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPR-HECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKD 325 (700)
T ss_pred chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcc-cccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhh
Confidence 334444444555554332333333 555554433111 00001111111111222333344445555555432 2222
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH----hCC----------CCCCHHHHH--HHHHHHHcCCChhHHHHHHHHHHhCCCCCC
Q 011323 345 LMGACSNAKNWQKALELYEHMK----SIK----------LKPTVSTMN--ALITALCDGDQLPKTMEVLSDMKSLGLCPN 408 (488)
Q Consensus 345 l~~~~~~~g~~~~a~~~~~~~~----~~~----------~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~ 408 (488)
+...|-.....+-..++.-.+. ..| -+|+...|. .++..+-+.|+++.|...++...++ .|+
T Consensus 326 l~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPT 403 (700)
T KOG1156|consen 326 LRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPT 403 (700)
T ss_pred hHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--Cch
Confidence 2222221111110111111110 000 134443333 3444555666666666666666543 344
Q ss_pred -HHHHHHHHHHHhhcCCHHHHHHHHHHHHHc
Q 011323 409 -TITYSILLVACERKDDVEVGLMLLSQAKED 438 (488)
Q Consensus 409 -~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 438 (488)
+..|..=.+.+.+.|+.++|..++++..+.
T Consensus 404 liEly~~KaRI~kH~G~l~eAa~~l~ea~el 434 (700)
T KOG1156|consen 404 LIELYLVKARIFKHAGLLDEAAAWLDEAQEL 434 (700)
T ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Confidence 334444456666666666666666666554
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.4e-09 Score=98.97 Aligned_cols=290 Identities=14% Similarity=0.137 Sum_probs=160.2
Q ss_pred HHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhH-HHHHHHHHHc-----
Q 011323 136 TCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVV-FNALITACGQ----- 209 (488)
Q Consensus 136 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~ll~~~~~----- 209 (488)
.+...|++++|++.++.-... +.............+.+.|+.++|..+|..+.+.+ |+... |..+..+..-
T Consensus 13 il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 13 ILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhcccc
Confidence 344556666666665553332 12223334455555556666666666666666553 33333 3333333311
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCCH-HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHH
Q 011323 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV-DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA 288 (488)
Q Consensus 210 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 288 (488)
..+.+...++++++... -|.......+.-.+.....+ ..+...+......|+| .+|+.+-..|.......-.
T Consensus 90 ~~~~~~~~~~y~~l~~~----yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i 162 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEK----YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAII 162 (517)
T ss_pred cccHHHHHHHHHHHHHh----CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHH
Confidence 12345555566665543 12222221111111111112 2333444555555643 3555555555555554444
Q ss_pred HHHHHHHHhC----C----------CCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhc
Q 011323 289 CSVYDDMTKK----G----------VIPDE--VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA 352 (488)
Q Consensus 289 ~~~~~~~~~~----~----------~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 352 (488)
.+++...... + -.|+. .++..+...|...|++++|+++++..+++. +-.+..|..-.+.+-+.
T Consensus 163 ~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~ 241 (517)
T PF12569_consen 163 ESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHA 241 (517)
T ss_pred HHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHC
Confidence 5555444321 1 12333 244556677778888888888888888764 33366777777888888
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHH------HH--HHHHHHHhhcCC
Q 011323 353 KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI------TY--SILLVACERKDD 424 (488)
Q Consensus 353 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~------~~--~~l~~~~~~~g~ 424 (488)
|++.+|.+.++..+..+ .-|...-+-.+..+.+.|+.++|.+++....+.+..|... .| .-...+|.+.|+
T Consensus 242 G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~ 320 (517)
T PF12569_consen 242 GDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGD 320 (517)
T ss_pred CCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhh
Confidence 88888888888887766 3566666667777778888888888888776655433221 12 233567788888
Q ss_pred HHHHHHHHHHHHH
Q 011323 425 VEVGLMLLSQAKE 437 (488)
Q Consensus 425 ~~~a~~~~~~~~~ 437 (488)
+..|++.|..+.+
T Consensus 321 ~~~ALk~~~~v~k 333 (517)
T PF12569_consen 321 YGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHHHH
Confidence 8877776665543
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.40 E-value=9.1e-08 Score=87.66 Aligned_cols=388 Identities=14% Similarity=0.133 Sum_probs=262.6
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHhcCChhHHHH
Q 011323 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQ 113 (488)
Q Consensus 37 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~ 113 (488)
..|+-++|.+......+.+ +...+....++-++++.+++++|++.|..+. +.|...|.-+.-.-++.|+++...+
T Consensus 53 ~lg~~~ea~~~vr~glr~d--~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~ 130 (700)
T KOG1156|consen 53 CLGKKEEAYELVRLGLRND--LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLE 130 (700)
T ss_pred cccchHHHHHHHHHHhccC--cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHH
Confidence 6899999999999888876 5666777788888999999999999998764 5678888888777788899999888
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcC-CCCCHHHHHHHHH------HHHhcCCHHHHHHHHH
Q 011323 114 VLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAG-IEPNVHTYGALID------GCAKAGQVAKAFGAYG 186 (488)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~------~~~~~~~~~~a~~~~~ 186 (488)
.-....+.. +.....|..+..++.-.|+...|..+++...+.. -.|+...+..... ...+.|..+.|++.+.
T Consensus 131 tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~ 209 (700)
T KOG1156|consen 131 TRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLL 209 (700)
T ss_pred HHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 888777653 4456678888888889999999999999988764 2467666654433 3456788888888776
Q ss_pred HHHhCCCCCCHhHH-HHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHH-hcCCHHHHH-HHHHHHHhc
Q 011323 187 IMRSKNVKPDRVVF-NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA-NAGQVDRAR-EVYKMIHKY 263 (488)
Q Consensus 187 ~~~~~~~~~~~~~~-~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~-~~~~~~~~~ 263 (488)
.-... ..|...+ ..-...+.+.++.++|..++..+... .||...|...+..+. +..+.-++. .+|....+.
T Consensus 210 ~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r----nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~ 283 (700)
T KOG1156|consen 210 DNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER----NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK 283 (700)
T ss_pred hhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh----CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc
Confidence 65433 2233333 33456678899999999999999875 677777766555444 333333333 666655543
Q ss_pred CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----HCC-----
Q 011323 264 NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK----NQG----- 334 (488)
Q Consensus 264 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~----- 334 (488)
-.. ....-..=++......-.+..-.++..+.+.|+++ ++..+...|-.-...+-..++.-.+. ..|
T Consensus 284 y~r-~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~ 359 (700)
T KOG1156|consen 284 YPR-HECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFL 359 (700)
T ss_pred Ccc-cccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcc
Confidence 211 11111111111112223344556677777888764 34444444433222221111111111 111
Q ss_pred -----CCccHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHcCCChhHHHHHHHHHHhCCCC
Q 011323 335 -----ISVGII--SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV-STMNALITALCDGDQLPKTMEVLSDMKSLGLC 406 (488)
Q Consensus 335 -----~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 406 (488)
-+|+.. ++-.+...+-..|+++.|...++..+.+ .|+. ..|..-.+.+...|++++|..++++..+.. .
T Consensus 360 D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~ 436 (700)
T KOG1156|consen 360 DDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-T 436 (700)
T ss_pred cccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-c
Confidence 134443 4445677888999999999999998876 4553 456666788889999999999999998754 4
Q ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCC
Q 011323 407 PNTITYSILLVACERKDDVEVGLMLLSQAKEDGV 440 (488)
Q Consensus 407 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 440 (488)
||...-..-+.-..+++..++|.++.....+.|.
T Consensus 437 aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 437 ADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred hhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 5655544666777789999999999998888765
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.3e-10 Score=96.88 Aligned_cols=233 Identities=14% Similarity=0.071 Sum_probs=181.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcch-HHH
Q 011323 161 NVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT-IGA 239 (488)
Q Consensus 161 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~~~ 239 (488)
|-.--+.+.++|.+.|.+.+|.+-++.-... .|-+.||..|-+.|.+..+...|+.++.+-... .|..+| ...
T Consensus 222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~----fP~~VT~l~g 295 (478)
T KOG1129|consen 222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS----FPFDVTYLLG 295 (478)
T ss_pred hHHHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc----CCchhhhhhh
Confidence 3344467788888888888888888887766 677788888888888888888888888887653 344344 345
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 011323 240 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 319 (488)
Q Consensus 240 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 319 (488)
+.+.+-..++.++|.++++...+.. +.+......+...|.-.++++.|+..++++.+.|+. +...|..+.-+|.-.++
T Consensus 296 ~ARi~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ 373 (478)
T KOG1129|consen 296 QARIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQ 373 (478)
T ss_pred hHHHHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcc
Confidence 6677778888888888888887765 556677777777888888888888888888888887 77888888888888888
Q ss_pred HHHHHHHHHHHHHCCCCcc--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHH
Q 011323 320 VEAAFEILQEAKNQGISVG--IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVL 397 (488)
Q Consensus 320 ~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 397 (488)
++-++.-|.+....-..|+ ..+|-.+.......||+..|.+.|+-....+ ..+...++.|.-.-.+.|++++|..++
T Consensus 374 ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll 452 (478)
T KOG1129|consen 374 IDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLL 452 (478)
T ss_pred hhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHH
Confidence 8888888887765433333 4567777777888889888888888887665 456778888888888889999998888
Q ss_pred HHHHh
Q 011323 398 SDMKS 402 (488)
Q Consensus 398 ~~~~~ 402 (488)
.....
T Consensus 453 ~~A~s 457 (478)
T KOG1129|consen 453 NAAKS 457 (478)
T ss_pred HHhhh
Confidence 88765
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.1e-10 Score=106.79 Aligned_cols=334 Identities=13% Similarity=0.094 Sum_probs=211.2
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHH
Q 011323 89 NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGAL 168 (488)
Q Consensus 89 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 168 (488)
.||..+|..+|.-||..|+.+.|- +|..|.-...+.+...|+.++......++.+.+. .|...||..|
T Consensus 22 ~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDtyt~L 89 (1088)
T KOG4318|consen 22 LPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADTYTNL 89 (1088)
T ss_pred CCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhHHHHH
Confidence 588899999999999999999888 8888888777788888999998888888877665 6788899999
Q ss_pred HHHHHhcCCHHH---HHHHHHHHH----hCCCCCCHhH--------------HHHHHHHHHccCCHHHHHHHHHHHhhCC
Q 011323 169 IDGCAKAGQVAK---AFGAYGIMR----SKNVKPDRVV--------------FNALITACGQSGAVDRAFDVLAEMNAEV 227 (488)
Q Consensus 169 ~~~~~~~~~~~~---a~~~~~~~~----~~~~~~~~~~--------------~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 227 (488)
..+|...||... +.+.+..+. ..|+-....- -...+....-.|.++.+++++..+....
T Consensus 90 l~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvsa 169 (1088)
T KOG4318|consen 90 LKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVSA 169 (1088)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCccc
Confidence 999999988643 333222221 1222111111 1223333445566777777766654321
Q ss_pred CCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHH
Q 011323 228 HPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFL 307 (488)
Q Consensus 228 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 307 (488)
+. . .....++-+.... ....++........-.+++.+|.+++.+-...|+.+.|..++.+|.+.|++.+..-|
T Consensus 170 ~~-~----p~~vfLrqnv~~n--tpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyF 242 (1088)
T KOG4318|consen 170 WN-A----PFQVFLRQNVVDN--TPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYF 242 (1088)
T ss_pred cc-c----hHHHHHHHhccCC--chHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccc
Confidence 11 1 1112233333222 233333333333222688999999999999999999999999999999998888877
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC
Q 011323 308 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 387 (488)
Q Consensus 308 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 387 (488)
..++-+ .++...+..+++-|...|+.|+..|+...+..+..+|....+ +.+ .+....+++-+..-.-.
T Consensus 243 wpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~--------~e~-sq~~hg~tAavrsaa~r 310 (1088)
T KOG4318|consen 243 WPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYG--------EEG-SQLAHGFTAAVRSAACR 310 (1088)
T ss_pred hhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhc--------ccc-cchhhhhhHHHHHHHhc
Confidence 777755 889999999999999999999999999998888886652222 222 23333333322222222
Q ss_pred CChhHHHHHHH------------HHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHc--CCCCcH-HHHHHHHH
Q 011323 388 DQLPKTMEVLS------------DMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED--GVIPNL-VMFKCIIG 452 (488)
Q Consensus 388 ~~~~~a~~~~~------------~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~-~~~~~li~ 452 (488)
| ..|.+.++ +..-.|+.....+|.... -....|+-++..++...+..- .+.++. ..|..++.
T Consensus 311 g--~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~-~l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lr 387 (1088)
T KOG4318|consen 311 G--LLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCE-KLRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLR 387 (1088)
T ss_pred c--cHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHH-HHHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHH
Confidence 2 22222222 222234444444444333 344478888888888776532 222322 23445555
Q ss_pred HHhh
Q 011323 453 MCSR 456 (488)
Q Consensus 453 ~~~~ 456 (488)
-|.+
T Consensus 388 qyFr 391 (1088)
T KOG4318|consen 388 QYFR 391 (1088)
T ss_pred HHHH
Confidence 5444
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.37 E-value=8.8e-08 Score=81.34 Aligned_cols=392 Identities=14% Similarity=0.091 Sum_probs=207.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHhcCCh
Q 011323 32 YNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDS 108 (488)
Q Consensus 32 ~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~ 108 (488)
..-++.+.++..|+.+++--...+- .....+...++..+-..|++++|...|+.+. .++...+-.+...+.-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~-EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDR-EEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccch-hhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHH
Confidence 4556678888888888887665442 2233555556666777788888888887664 34555555555555556777
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011323 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM 188 (488)
Q Consensus 109 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 188 (488)
.+|.++-... +.++-.-..++...-+.++-++-..+.+.+.. +..---+|.......-.+++|+++|.+.
T Consensus 108 ~eA~~~~~ka-----~k~pL~~RLlfhlahklndEk~~~~fh~~LqD-----~~EdqLSLAsvhYmR~HYQeAIdvYkrv 177 (557)
T KOG3785|consen 108 IEAKSIAEKA-----PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQD-----TLEDQLSLASVHYMRMHYQEAIDVYKRV 177 (557)
T ss_pred HHHHHHHhhC-----CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhh-----hHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 7777765442 23344444555555566776666655555542 2223334444444455677888888877
Q ss_pred HhCCCCCCHhHHHHH-HHHHHccCCHHHHHHHHHHHhhCCCCCCCC-cchHHHHHHHHHhc--CC---------------
Q 011323 189 RSKNVKPDRVVFNAL-ITACGQSGAVDRAFDVLAEMNAEVHPVDPD-HITIGALMKACANA--GQ--------------- 249 (488)
Q Consensus 189 ~~~~~~~~~~~~~~l-l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~--~~--------------- 249 (488)
... .|.-...|.- .-+|.+..-++-+.++++-..++ .|| ....+..+....+. |+
T Consensus 178 L~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q----~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~ 251 (557)
T KOG3785|consen 178 LQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ----FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQ 251 (557)
T ss_pred Hhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh----CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccc
Confidence 755 3455555543 34556666666666666666553 233 22233222222221 11
Q ss_pred ------------------HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 011323 250 ------------------VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 311 (488)
Q Consensus 250 ------------------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 311 (488)
-+.|++++--+.+. -+.....++-.|.+.++..+|..+.+++... .|-......++
T Consensus 252 ~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~----IPEARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilKgvv 325 (557)
T KOG3785|consen 252 EYPFIEYLCRHNLVVFRNGEGALQVLPSLMKH----IPEARLNLIIYYLNQNDVQEAISLCKDLDPT--TPYEYILKGVV 325 (557)
T ss_pred cchhHHHHHHcCeEEEeCCccHHHhchHHHhh----ChHhhhhheeeecccccHHHHHHHHhhcCCC--ChHHHHHHHHH
Confidence 11222222111111 1234445566678888888888887765432 23333333332
Q ss_pred HHH-----HhcCCHHHHHHHHHHHHHCCCCcc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 011323 312 DFA-----GHAGKVEAAFEILQEAKNQGISVG-IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385 (488)
Q Consensus 312 ~~~-----~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 385 (488)
.+. .......-|.+.|+..-..+..-| ..---++...+.-..+++++...+..+...-...|...+| +..+++
T Consensus 326 ~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~ 404 (557)
T KOG3785|consen 326 FAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKL 404 (557)
T ss_pred HHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHH
Confidence 221 111224445555555444332211 1112233334444456666666666665543333333333 566777
Q ss_pred cCCChhHHHHHHHHHHhCCCCCCHHHH-HHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Q 011323 386 DGDQLPKTMEVLSDMKSLGLCPNTITY-SILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451 (488)
Q Consensus 386 ~~~~~~~a~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 451 (488)
..|.+.+|.++|-.+....++ |..+| +.|.+.|.+.++++-|..++ .+.+-..+..+.-.+|
T Consensus 405 atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~---lk~~t~~e~fsLLqlI 467 (557)
T KOG3785|consen 405 ATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMM---LKTNTPSERFSLLQLI 467 (557)
T ss_pred HhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHH---HhcCCchhHHHHHHHH
Confidence 777777777777666543333 33444 34456666777776665444 4444444444444444
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.2e-07 Score=80.48 Aligned_cols=393 Identities=10% Similarity=0.072 Sum_probs=228.6
Q ss_pred hHHHHHHHH--hcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHhc
Q 011323 28 QLHSYNRLI--RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASS 105 (488)
Q Consensus 28 ~~~~~~~l~--~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~ 105 (488)
.+..|-... +.|++++|+..|.-+.+.+- .+..+...++...--.|.+.+|..+.++.++ ++-.-..++..-.+.
T Consensus 58 ~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~--~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k-~pL~~RLlfhlahkl 134 (557)
T KOG3785|consen 58 SLQLWIAHCYFHLGDYEEALNVYTFLMNKDD--APAELGVNLACCKFYLGQYIEAKSIAEKAPK-TPLCIRLLFHLAHKL 134 (557)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHhccCC--CCcccchhHHHHHHHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHh
Confidence 455554444 89999999999998887653 3333333344444445889999999888763 344555566666677
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHH-HHHHHhcCCHHHHHHH
Q 011323 106 KDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGAL-IDGCAKAGQVAKAFGA 184 (488)
Q Consensus 106 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~a~~~ 184 (488)
++-++-..+.+.+... ...-..|.......-.+.+|++++.+.+.. .|+-...|.- .-+|.+..-++-+.++
T Consensus 135 ndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--n~ey~alNVy~ALCyyKlDYydvsqev 207 (557)
T KOG3785|consen 135 NDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQD--NPEYIALNVYMALCYYKLDYYDVSQEV 207 (557)
T ss_pred CcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--ChhhhhhHHHHHHHHHhcchhhhHHHH
Confidence 7777666666655432 122333444444455677888888888765 4454444443 3455666666666666
Q ss_pred HHHHHhCCCCCCHhHHHHHHHHHHc--cCCH---------------------------------HHHHHHHHHHhhCCCC
Q 011323 185 YGIMRSKNVKPDRVVFNALITACGQ--SGAV---------------------------------DRAFDVLAEMNAEVHP 229 (488)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~ll~~~~~--~g~~---------------------------------~~a~~~~~~~~~~~~~ 229 (488)
+.--.+. ++.++...|.......+ .|+. +.|++++-.+...
T Consensus 208 l~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~--- 283 (557)
T KOG3785|consen 208 LKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKH--- 283 (557)
T ss_pred HHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhh---
Confidence 6665544 23334444433332222 1221 1122221111110
Q ss_pred CCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcc-------CChHHHHHHHHHHHhCCCCC
Q 011323 230 VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT-------GDWEFACSVYDDMTKKGVIP 302 (488)
Q Consensus 230 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------~~~~~a~~~~~~~~~~~~~~ 302 (488)
-|. .-..++-.|.+.+++.+|..+.+.+. +.++.-|-.-.-.+... .+..-|.+.|.-.-..+..-
T Consensus 284 -IPE--ARlNL~iYyL~q~dVqeA~~L~Kdl~----PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ec 356 (557)
T KOG3785|consen 284 -IPE--ARLNLIIYYLNQNDVQEAISLCKDLD----PTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALEC 356 (557)
T ss_pred -ChH--hhhhheeeecccccHHHHHHHHhhcC----CCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhccccccc
Confidence 111 12233445778899999988877664 22333332222222222 23455666666555554433
Q ss_pred CHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH-HH
Q 011323 303 DEV-FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMN-AL 380 (488)
Q Consensus 303 ~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~l 380 (488)
|.. .-.++...+.-..++++.+-++..+..--...|...+ .+..+++..|.+.+|+++|-++..-.+ .|..+|. .|
T Consensus 357 DTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~i-kn~~~Y~s~L 434 (557)
T KOG3785|consen 357 DTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEI-KNKILYKSML 434 (557)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhh-hhhHHHHHHH
Confidence 322 2334445555566788888888877765333344444 467888899999999999988765443 3455555 45
Q ss_pred HHHHHcCCChhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHH
Q 011323 381 ITALCDGDQLPKTMEVLSDMKSLGLCPNT-ITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 448 (488)
Q Consensus 381 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 448 (488)
.++|.+.+.++-|..++-.+.. +.+. .....+..-|.+.+.+--|.+.|+.+... .|+...|.
T Consensus 435 ArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l--DP~pEnWe 498 (557)
T KOG3785|consen 435 ARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELEIL--DPTPENWE 498 (557)
T ss_pred HHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc--CCCccccC
Confidence 6788899999888776655432 2233 23445567788888888888888877764 35544443
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.31 E-value=7.3e-12 Score=77.32 Aligned_cols=49 Identities=31% Similarity=0.634 Sum_probs=25.4
Q ss_pred CCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 011323 372 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACE 420 (488)
Q Consensus 372 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 420 (488)
||..+|+.++.+|++.|++++|.++|++|.+.|+.||..||+.++++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4445555555555555555555555555555555555555555555544
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.30 E-value=9.2e-12 Score=76.86 Aligned_cols=49 Identities=37% Similarity=0.661 Sum_probs=27.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHH
Q 011323 160 PNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG 208 (488)
Q Consensus 160 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 208 (488)
||..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.++++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4555555555555555555555555555555555555555555555554
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.30 E-value=8.9e-08 Score=89.52 Aligned_cols=440 Identities=13% Similarity=0.003 Sum_probs=231.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCCC---CCHHHHHHHHHHH
Q 011323 29 LHSYNRLIRQGRISECIDLLEDMERK---GLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN---PTLSTFNMLMSVC 102 (488)
Q Consensus 29 ~~~~~~l~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~ 102 (488)
.-.-..++-+.+.+++.-..--+.+. +...++..++..+.-.....|+++.+.+.|++..+ .....|..+...+
T Consensus 288 lli~es~i~Re~~~d~ilslm~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~ 367 (799)
T KOG4162|consen 288 LLIEESLIPRENIEDAILSLMLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSY 367 (799)
T ss_pred HHHHhhccccccHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHH
Confidence 33344555556666655544333221 22346677777777777788888888888887653 3455777777778
Q ss_pred HhcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHH-cCCHhHHHHHHHHHHHc--C--CCCCHHHHHHHHHHHHhc-
Q 011323 103 ASSKDSEGAFQVLRLVQEAGLKA-DCKLYTTLITTCAK-SGKVDAMFEVFHEMVNA--G--IEPNVHTYGALIDGCAKA- 175 (488)
Q Consensus 103 ~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~--~--~~~~~~~~~~l~~~~~~~- 175 (488)
...|.-..|+.+++......-.| +...+...-..|.+ .+.+++++++-.+.... + -......|..+.-+|...
T Consensus 368 saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A 447 (799)
T KOG4162|consen 368 SAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQA 447 (799)
T ss_pred HHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHh
Confidence 88888888888887655332123 33444444444433 46677777666665551 1 123445555555555421
Q ss_pred ----------CCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHH
Q 011323 176 ----------GQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 245 (488)
Q Consensus 176 ----------~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 245 (488)
....++++.+++..+.+ +.|+.....+.--|+..++++.|.+...+...-+ -..+...|..+.-.+.
T Consensus 448 ~~a~~~seR~~~h~kslqale~av~~d-~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~--~~~~~~~whLLALvlS 524 (799)
T KOG4162|consen 448 RQANLKSERDALHKKSLQALEEAVQFD-PTDPLVIFYLALQYAEQRQLTSALDYAREALALN--RGDSAKAWHLLALVLS 524 (799)
T ss_pred hcCCChHHHHHHHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHh
Confidence 22567778888887664 3344444445555677788888888888877642 2345567777777777
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHH-----------------h----CC-----
Q 011323 246 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT-----------------K----KG----- 299 (488)
Q Consensus 246 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-----------------~----~~----- 299 (488)
..+++.+|+.+.+.....- ..|-.....-+..-...++.+++......+. . .|
T Consensus 525 a~kr~~~Al~vvd~al~E~-~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~ 603 (799)
T KOG4162|consen 525 AQKRLKEALDVVDAALEEF-GDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLAL 603 (799)
T ss_pred hhhhhHHHHHHHHHHHHHh-hhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCc
Confidence 8888888888887665431 1111111111111111223222222211110 0 00
Q ss_pred --CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcc------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 011323 300 --VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVG------IISYSSLMGACSNAKNWQKALELYEHMKSIKLK 371 (488)
Q Consensus 300 --~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 371 (488)
..-...++..+.......+....-...+...... ..|+ ...|......+.+.+..++|.-.+.+..... +
T Consensus 604 ~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~-~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~ 681 (799)
T KOG4162|consen 604 SQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVL-PGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-P 681 (799)
T ss_pred ccccccchhhHHHHHHHHhhhhhcccccccCccccc-CCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-h
Confidence 0001122222222211111110000001111111 0111 1233444555566666666666665555432 3
Q ss_pred CCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhhcCCHHHHHH--HHHHHHHcCCCCcHHHHH
Q 011323 372 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN-TITYSILLVACERKDDVEVGLM--LLSQAKEDGVIPNLVMFK 448 (488)
Q Consensus 372 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~--~~~~~~~~~~~~~~~~~~ 448 (488)
.....|......+...|...+|.+.|..... +.|+ +....++...+...|+..-+.. ++..+.+.+.. +...|-
T Consensus 682 l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~--ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~-n~eaW~ 758 (799)
T KOG4162|consen 682 LSASVYYLRGLLLEVKGQLEEAKEAFLVALA--LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPL-NHEAWY 758 (799)
T ss_pred hhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh--cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCC-CHHHHH
Confidence 3445555555566666677777776666655 3444 4556666666666666655555 66666654321 333454
Q ss_pred HHHHHHhh--cHHHHHHHHHHhhhccCCCCc
Q 011323 449 CIIGMCSR--RYEKARTLNEHVLSFNSGRPQ 477 (488)
Q Consensus 449 ~li~~~~~--~~~~a~~~~~~~~~~~~~~~~ 477 (488)
.+...+.. +.++|.+.+.+..++++..|.
T Consensus 759 ~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 759 YLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 45444443 566677777766666655554
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.5e-08 Score=93.53 Aligned_cols=97 Identities=13% Similarity=0.107 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHHHHc-----CC-CCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CC-
Q 011323 127 CKLYTTLITTCAKSGKVDAMFEVFHEMVNA-----GI-EPNVH-TYGALIDGCAKAGQVAKAFGAYGIMRSK-----NV- 193 (488)
Q Consensus 127 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~- 193 (488)
..+...+...|...|+++.|..+++...+. |. .|... ..+.+...|...+++.+|..+|+++... |-
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 345555667777777777777777665543 21 12222 2233555666666666666666665432 10
Q ss_pred -CCCHhHHHHHHHHHHccCCHHHHHHHHHHH
Q 011323 194 -KPDRVVFNALITACGQSGAVDRAFDVLAEM 223 (488)
Q Consensus 194 -~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 223 (488)
+.-..+++.|..+|.+.|++++|...+++.
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~A 309 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERA 309 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHH
Confidence 111334555555666666666655555443
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.27 E-value=3e-07 Score=83.51 Aligned_cols=393 Identities=11% Similarity=0.067 Sum_probs=222.0
Q ss_pred ccCCCchhHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCCCCCHHHHHHHHH
Q 011323 21 YAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMS 100 (488)
Q Consensus 21 ~~~~~~~~~~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~ 100 (488)
+|++...----.-+||+.++|++|+.+.+.-.... ..+... ..-+.+..+.+..++|+..++-..+.+..+...-..
T Consensus 42 ~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~--~~~~~~-fEKAYc~Yrlnk~Dealk~~~~~~~~~~~ll~L~AQ 118 (652)
T KOG2376|consen 42 VPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALL--VINSFF-FEKAYCEYRLNKLDEALKTLKGLDRLDDKLLELRAQ 118 (652)
T ss_pred CCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhh--hcchhh-HHHHHHHHHcccHHHHHHHHhcccccchHHHHHHHH
Confidence 35555555555667889999999996665332111 112221 222333456688999999999666667777777788
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHH---HHHHHHhc
Q 011323 101 VCASSKDSEGAFQVLRLVQEAGLKADCKL--YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGA---LIDGCAKA 175 (488)
Q Consensus 101 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---l~~~~~~~ 175 (488)
.+.+.+++++|+++|+.+.+.+. ++... -..++.+-.. -.+. +.+... ..| ..+|.. ..-.++..
T Consensus 119 vlYrl~~ydealdiY~~L~kn~~-dd~d~~~r~nl~a~~a~----l~~~-~~q~v~---~v~-e~syel~yN~Ac~~i~~ 188 (652)
T KOG2376|consen 119 VLYRLERYDEALDIYQHLAKNNS-DDQDEERRANLLAVAAA----LQVQ-LLQSVP---EVP-EDSYELLYNTACILIEN 188 (652)
T ss_pred HHHHHhhHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHHHh----hhHH-HHHhcc---CCC-cchHHHHHHHHHHHHhc
Confidence 89999999999999999987653 22211 1111111100 0111 122221 122 223332 23445667
Q ss_pred CCHHHHHHHHHHHHhCC-------------CCCCHhH-HHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchH----
Q 011323 176 GQVAKAFGAYGIMRSKN-------------VKPDRVV-FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI---- 237 (488)
Q Consensus 176 ~~~~~a~~~~~~~~~~~-------------~~~~~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~---- 237 (488)
|++.+|+++++...+.+ +.-...+ --.+.-.+-..|+.++|.+++..+.... .+|....
T Consensus 189 gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~---~~D~~~~Av~~ 265 (652)
T KOG2376|consen 189 GKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN---PADEPSLAVAV 265 (652)
T ss_pred ccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc---CCCchHHHHHh
Confidence 88888888887772211 0001111 1123334556788888888888777642 2222111
Q ss_pred HHHHHHHHhcCC-----------------HHHHHHHH--------------------------HHHHhc-CCCCCHHHHH
Q 011323 238 GALMKACANAGQ-----------------VDRAREVY--------------------------KMIHKY-NIKGTPEVYT 273 (488)
Q Consensus 238 ~~l~~~~~~~~~-----------------~~~a~~~~--------------------------~~~~~~-~~~~~~~~~~ 273 (488)
|.++ +.....+ .+..+.-+ +..... +..| ...+.
T Consensus 266 NNLv-a~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p-~~~~~ 343 (652)
T KOG2376|consen 266 NNLV-ALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLPGMSP-ESLFP 343 (652)
T ss_pred cchh-hhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCccCc-hHHHH
Confidence 1111 0000000 00000000 000000 1112 23333
Q ss_pred HHHHHHHc--cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH--------HHHHCCCCccHHHHH
Q 011323 274 IAINCCSQ--TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ--------EAKNQGISVGIISYS 343 (488)
Q Consensus 274 ~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~--------~~~~~~~~~~~~~~~ 343 (488)
.++....+ ......+.+++...-+....-...+.-..+......|+++.|.+++. .+.+.+.. +.+..
T Consensus 344 ~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~--P~~V~ 421 (652)
T KOG2376|consen 344 ILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHL--PGTVG 421 (652)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccC--hhHHH
Confidence 44433322 22466777777776665443335566777788889999999999999 55554444 45556
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC--CCCCC----HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 011323 344 SLMGACSNAKNWQKALELYEHMKSI--KLKPT----VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 417 (488)
Q Consensus 344 ~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 417 (488)
.++..+.+.++-+.|..++...... .-.+. ..++..++..-.+.|+-++|..+++++.+.. ++|..+...++.
T Consensus 422 aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~ 500 (652)
T KOG2376|consen 422 AIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVT 500 (652)
T ss_pred HHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHH
Confidence 6777778888777777777766521 00111 2233334444557899999999999999863 788999999999
Q ss_pred HHhhcCCHHHHHHHHHHH
Q 011323 418 ACERKDDVEVGLMLLSQA 435 (488)
Q Consensus 418 ~~~~~g~~~~a~~~~~~~ 435 (488)
+|++. +++.|..+-+.+
T Consensus 501 a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 501 AYARL-DPEKAESLSKKL 517 (652)
T ss_pred HHHhc-CHHHHHHHhhcC
Confidence 99876 567777665543
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.7e-08 Score=80.54 Aligned_cols=197 Identities=11% Similarity=0.052 Sum_probs=133.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 011323 237 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 316 (488)
Q Consensus 237 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 316 (488)
...+.-.|...|+...|..-+++..+.+ +.+..++..+...|.+.|..+.|.+-|++.....+. +..+.|.....+|.
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC~ 115 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHHh
Confidence 3445556777777777777777777765 556667777777777777777777777777665444 55566666667777
Q ss_pred cCCHHHHHHHHHHHHHCCC-CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHH
Q 011323 317 AGKVEAAFEILQEAKNQGI-SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTME 395 (488)
Q Consensus 317 ~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 395 (488)
.|++++|...|++...... .-...+|..+.-+..+.|+.+.|...|++..+.. +......-.+.....+.|++..|..
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHHH
Confidence 7777777777777665421 2224566666666677777777777777777654 3344556666777777777777777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 011323 396 VLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (488)
Q Consensus 396 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 437 (488)
+++.....+ .++..+....|+.-.+.|+.+.+-++=.++.+
T Consensus 195 ~~~~~~~~~-~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 195 YLERYQQRG-GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHHhcc-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 777766654 37777777777777777777777666655554
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.1e-08 Score=90.38 Aligned_cols=95 Identities=13% Similarity=-0.028 Sum_probs=45.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 011323 95 FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAK 174 (488)
Q Consensus 95 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 174 (488)
|..+...+...|+.++|...|+...+.. +.+...|+.+...+...|++++|.+.|+...+.. +-+..+|..+..++..
T Consensus 67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~ 144 (296)
T PRK11189 67 HYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAYLNRGIALYY 144 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 3334444444555555555555544432 2334455555555555555555555555554432 1123444444444555
Q ss_pred cCCHHHHHHHHHHHHhC
Q 011323 175 AGQVAKAFGAYGIMRSK 191 (488)
Q Consensus 175 ~~~~~~a~~~~~~~~~~ 191 (488)
.|++++|.+.|+.....
T Consensus 145 ~g~~~eA~~~~~~al~~ 161 (296)
T PRK11189 145 GGRYELAQDDLLAFYQD 161 (296)
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 55555555555554443
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.1e-06 Score=78.94 Aligned_cols=326 Identities=14% Similarity=0.121 Sum_probs=188.8
Q ss_pred HHHHHHHhhhHHHHHHHHHhhhCC-----CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 011323 65 ARFFNVCKSQKAIKEAFRFFKLVP-----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK 139 (488)
Q Consensus 65 ~~l~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 139 (488)
...++.+..+|++-..+..|+++. .....+|...+......+-++-++.++++..+. ++..-+..+..+++
T Consensus 106 l~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L~~ 181 (835)
T KOG2047|consen 106 LDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYLAK 181 (835)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHHHh
Confidence 344556677788888888887653 245567888888888888888999999888753 34446677888889
Q ss_pred cCCHhHHHHHHHHHHHc------CCCCCHHHHHHHHHHHHhcCCHH---HHHHHHHHHHhCCCCCC--HhHHHHHHHHHH
Q 011323 140 SGKVDAMFEVFHEMVNA------GIEPNVHTYGALIDGCAKAGQVA---KAFGAYGIMRSKNVKPD--RVVFNALITACG 208 (488)
Q Consensus 140 ~~~~~~a~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~ 208 (488)
.+++++|.+.+...... ..+.+...|.-+....+++-+.- .+..+++.+... -+| ...|++|..-|.
T Consensus 182 ~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYYI 259 (835)
T KOG2047|consen 182 SDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADYYI 259 (835)
T ss_pred ccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHHHH
Confidence 99999999888877642 12445566777666666544332 344455555543 344 356899999999
Q ss_pred ccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhc----------------C------CHHHHHHHHHHHHhcCC-
Q 011323 209 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA----------------G------QVDRAREVYKMIHKYNI- 265 (488)
Q Consensus 209 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------------~------~~~~a~~~~~~~~~~~~- 265 (488)
+.|.++.|..+|++....... ..-|..+...|+.- + +++-...-|+.+.....
T Consensus 260 r~g~~ekarDvyeeai~~v~t----vrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~ 335 (835)
T KOG2047|consen 260 RSGLFEKARDVYEEAIQTVMT----VRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPL 335 (835)
T ss_pred HhhhhHHHHHHHHHHHHhhee----hhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccch
Confidence 999999999999998775222 22233333333221 1 12223333333332210
Q ss_pred ----------CCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCC------CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011323 266 ----------KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP------DEVFLSALIDFAGHAGKVEAAFEILQE 329 (488)
Q Consensus 266 ----------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~a~~~~~~ 329 (488)
+.+...+..-+. ...|+..+...++.+..+. +.| -...|..+...|-..|+++.|..+|.+
T Consensus 336 ~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifek 412 (835)
T KOG2047|consen 336 LLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEK 412 (835)
T ss_pred HHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 111111211111 1234555556666665543 222 123466677777777777777777777
Q ss_pred HHHCCCCcc---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-----------------CCHHHHHHHHHHHHcCCC
Q 011323 330 AKNQGISVG---IISYSSLMGACSNAKNWQKALELYEHMKSIKLK-----------------PTVSTMNALITALCDGDQ 389 (488)
Q Consensus 330 ~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-----------------~~~~~~~~l~~~~~~~~~ 389 (488)
..+...+-- ..+|-.....-.+..+++.|.++.+......-. .+...|..++...-..|-
T Consensus 413 a~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gt 492 (835)
T KOG2047|consen 413 ATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGT 492 (835)
T ss_pred hhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhcc
Confidence 766543211 234444445555666777777776665432100 012234444444445566
Q ss_pred hhHHHHHHHHHHhC
Q 011323 390 LPKTMEVLSDMKSL 403 (488)
Q Consensus 390 ~~~a~~~~~~~~~~ 403 (488)
++....+++++.+.
T Consensus 493 festk~vYdriidL 506 (835)
T KOG2047|consen 493 FESTKAVYDRIIDL 506 (835)
T ss_pred HHHHHHHHHHHHHH
Confidence 66666666665543
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.9e-09 Score=98.25 Aligned_cols=239 Identities=13% Similarity=0.072 Sum_probs=144.8
Q ss_pred CchHHHHHHHHHHHhhhHHHHHHHHHhhhCCC----------CCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHc-----
Q 011323 58 DMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----------PTLS-TFNMLMSVCASSKDSEGAFQVLRLVQEA----- 121 (488)
Q Consensus 58 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----------~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~----- 121 (488)
|....+...+...|..+|+++.|..+++.... +.+. ..+.+...|...+++++|..+|+++...
T Consensus 196 P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~ 275 (508)
T KOG1840|consen 196 PERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVF 275 (508)
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhc
Confidence 33334444466666666777777776665431 2222 2233556677777777777777766531
Q ss_pred C--CCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHc-----CC-CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhC-
Q 011323 122 G--LKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA-----GI-EPNV-HTYGALIDGCAKAGQVAKAFGAYGIMRSK- 191 (488)
Q Consensus 122 ~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~- 191 (488)
| .+.-..+++.|..+|.+.|++++|...++...+. |. .|.+ ..++.+...++..+++++|..+++...+.
T Consensus 276 G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~ 355 (508)
T KOG1840|consen 276 GEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIY 355 (508)
T ss_pred CCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 1 1112346667777777888877777666654431 21 2222 23556666777777888777777765432
Q ss_pred --CCCC----CHhHHHHHHHHHHccCCHHHHHHHHHHHhhCC----CCCCC-CcchHHHHHHHHHhcCCHHHHHHHHHHH
Q 011323 192 --NVKP----DRVVFNALITACGQSGAVDRAFDVLAEMNAEV----HPVDP-DHITIGALMKACANAGQVDRAREVYKMI 260 (488)
Q Consensus 192 --~~~~----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~----~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 260 (488)
-+.+ -..+++.+...|...|++++|.++++.+.... ....+ ....++.+...|.+.+.++.|.++|...
T Consensus 356 ~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~ 435 (508)
T KOG1840|consen 356 LDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEA 435 (508)
T ss_pred HhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHH
Confidence 1111 23567777888888888888888877765431 11122 2345677777777777777777777644
Q ss_pred Hhc------CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 011323 261 HKY------NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 296 (488)
Q Consensus 261 ~~~------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 296 (488)
... +.+....+|..|...|...|+++.|.++.+...
T Consensus 436 ~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 436 KDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 322 222235677888888888888888888877655
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.20 E-value=4.3e-08 Score=82.83 Aligned_cols=301 Identities=11% Similarity=0.075 Sum_probs=149.5
Q ss_pred hHHHHHHHHHHHhhhHHHHHHHHHhhhCCCCCHHHHHHHHH---HHHhcCChhHHHHHHHHHHHcCCCCCHHH-HHHHHH
Q 011323 60 DKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMS---VCASSKDSEGAFQVLRLVQEAGLKADCKL-YTTLIT 135 (488)
Q Consensus 60 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~ 135 (488)
+..-|..++.-....|++.+|+..|..+.+.|+..|.++.+ .|...|+...|+.=+....+. +||-.. -..-..
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~ 114 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGV 114 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhch
Confidence 33444444444444455555555555444444444444332 344445555555444444432 333221 111222
Q ss_pred HHHHcCCHhHHHHHHHHHHHcCCC------------CCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHH
Q 011323 136 TCAKSGKVDAMFEVFHEMVNAGIE------------PNVHT--YGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFN 201 (488)
Q Consensus 136 ~~~~~~~~~~a~~~~~~~~~~~~~------------~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 201 (488)
.+.+.|.+++|..-|+.+++.... +.... ....+..+...|+...|+.....+.+.. +-|...+.
T Consensus 115 vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~ 193 (504)
T KOG0624|consen 115 VLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQ 193 (504)
T ss_pred hhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHH
Confidence 334455555555555554443110 00000 1122333344555555555555555442 33444444
Q ss_pred HHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHH----HHHH---
Q 011323 202 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE----VYTI--- 274 (488)
Q Consensus 202 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~--- 274 (488)
.-..+|...|++..|+.-++...+- ...+..++--+-..+...|+.+.++......++.+ |+-. .|..
T Consensus 194 ~Rakc~i~~~e~k~AI~Dlk~askL---s~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKld--pdHK~Cf~~YKklkK 268 (504)
T KOG0624|consen 194 ARAKCYIAEGEPKKAIHDLKQASKL---SQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLD--PDHKLCFPFYKKLKK 268 (504)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHhc---cccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccC--cchhhHHHHHHHHHH
Confidence 4555555555555555444443321 11122233333444445555555555554444432 2211 1110
Q ss_pred ------HHHHHHccCChHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHH
Q 011323 275 ------AINCCSQTGDWEFACSVYDDMTKKGVIPDE---VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSL 345 (488)
Q Consensus 275 ------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 345 (488)
-+......++|.++.+-.+...+..+.... ..+..+-.++...|++.+|++.-.++.+.. +.|..++.--
T Consensus 269 v~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d-~~dv~~l~dR 347 (504)
T KOG0624|consen 269 VVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID-PDDVQVLCDR 347 (504)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcC-chHHHHHHHH
Confidence 022344567777777777777765443222 234445556677788888888888877753 3347777777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCC
Q 011323 346 MGACSNAKNWQKALELYEHMKSIK 369 (488)
Q Consensus 346 ~~~~~~~g~~~~a~~~~~~~~~~~ 369 (488)
..+|.-..+++.|+.-|+...+.+
T Consensus 348 AeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 348 AEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred HHHHhhhHHHHHHHHHHHHHHhcC
Confidence 888888888888888888887765
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.20 E-value=8e-08 Score=76.81 Aligned_cols=198 Identities=16% Similarity=0.073 Sum_probs=117.3
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHc
Q 011323 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209 (488)
Q Consensus 130 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 209 (488)
...|.-.|...|+...|.+-+++.++.. +.+..+|..+...|.+.|+.+.|.+.|++..+.. +-+..+.|.....+|.
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHh
Confidence 3345556666666666666666666552 2234566666666666666666666666666553 3345556666666666
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHH
Q 011323 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 289 (488)
Q Consensus 210 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 289 (488)
.|.+++|.+.|++.... +....-..+|..+.-+..+.|+.+.|...|+...+.. +..+.+...+.....+.|++-.|.
T Consensus 116 qg~~~eA~q~F~~Al~~-P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 116 QGRPEEAMQQFERALAD-PAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred CCChHHHHHHHHHHHhC-CCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHH
Confidence 66666666666666553 1111123355555555566666666666666666654 334455556666666666666666
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011323 290 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 332 (488)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 332 (488)
..++.....+. ++..+....|..-...|+.+.+-++=.++.+
T Consensus 194 ~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 194 LYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 66666666554 5666666666666666666666555555544
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.3e-06 Score=80.39 Aligned_cols=397 Identities=14% Similarity=0.046 Sum_probs=241.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCCC-----CCHHHHHHHHHHHHh-cC
Q 011323 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN-----PTLSTFNMLMSVCAS-SK 106 (488)
Q Consensus 33 ~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~-~~ 106 (488)
-++..-|+++.+.+.|++....-+.. ...+ ..+.-.+...|.-..|..+++...+ +++..+-..-..|.+ .+
T Consensus 331 ~al~~~g~f~~lae~fE~~~~~~~~~-~e~w-~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~ 408 (799)
T KOG4162|consen 331 FALSRCGQFEVLAEQFEQALPFSFGE-HERW-YQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLK 408 (799)
T ss_pred HHHHHHHHHHHHHHHHHHHhHhhhhh-HHHH-HHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchh
Confidence 34457788888888888876543222 2222 2233334444556777887765432 234455544555554 36
Q ss_pred ChhHHHHHHHHHHH--cCC--CCCHHHHHHHHHHHHHcC-----------CHhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 011323 107 DSEGAFQVLRLVQE--AGL--KADCKLYTTLITTCAKSG-----------KVDAMFEVFHEMVNAGIEPNVHTYGALIDG 171 (488)
Q Consensus 107 ~~~~a~~~~~~~~~--~~~--~~~~~~~~~l~~~~~~~~-----------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 171 (488)
..+++++...+... .+. ......|..+.-+|...- ...++++.+++..+.+. -|......+.--
T Consensus 409 ~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~-~dp~~if~lalq 487 (799)
T KOG4162|consen 409 LVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDP-TDPLVIFYLALQ 487 (799)
T ss_pred hhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCC-CCchHHHHHHHH
Confidence 77777777766655 111 223455666665655331 23456777777776542 233333334445
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCCHH
Q 011323 172 CAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD 251 (488)
Q Consensus 172 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 251 (488)
|+..++++.|.+..++..+.+-..+...|..+.-.+...+++.+|+.+.+..... ...|......-+..-...++.+
T Consensus 488 ~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E---~~~N~~l~~~~~~i~~~~~~~e 564 (799)
T KOG4162|consen 488 YAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE---FGDNHVLMDGKIHIELTFNDRE 564 (799)
T ss_pred HHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH---hhhhhhhchhhhhhhhhcccHH
Confidence 6777888889888888887755668888888888888888899999888887764 1223333333444455678888
Q ss_pred HHHHHHHHHHhcCC-CCCH-HHHH--HHHH----HHHccCChHHHHHHHHH-----------------HHhCCCCC--C-
Q 011323 252 RAREVYKMIHKYNI-KGTP-EVYT--IAIN----CCSQTGDWEFACSVYDD-----------------MTKKGVIP--D- 303 (488)
Q Consensus 252 ~a~~~~~~~~~~~~-~~~~-~~~~--~l~~----~~~~~~~~~~a~~~~~~-----------------~~~~~~~~--~- 303 (488)
++......+...-- .+.. .+.. .... .....++..++.+..+. +......| +
T Consensus 565 ~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~ 644 (799)
T KOG4162|consen 565 EALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDS 644 (799)
T ss_pred HHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCc
Confidence 88887776654200 0000 0000 0000 00000111111111111 11111111 2
Q ss_pred -----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 011323 304 -----EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMN 378 (488)
Q Consensus 304 -----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 378 (488)
...|......+.+.+..++|...+.+..... +.....|......+...|.+++|...|......+ +.++.+..
T Consensus 645 ~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld-P~hv~s~~ 722 (799)
T KOG4162|consen 645 LWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALD-PDHVPSMT 722 (799)
T ss_pred hHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC-CCCcHHHH
Confidence 1234455566777788888887777777653 4556777777777888888888888888877665 44567778
Q ss_pred HHHHHHHcCCChhHHHH--HHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHc
Q 011323 379 ALITALCDGDQLPKTME--VLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 438 (488)
Q Consensus 379 ~l~~~~~~~~~~~~a~~--~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 438 (488)
++...+.+.|+..-|.. ++.++.+.+ +.++..|..+...+.+.|+.+.|.+.|....+.
T Consensus 723 Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 723 ALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 88888888888777777 888888754 456888888888898999998888888776654
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.9e-07 Score=82.72 Aligned_cols=386 Identities=12% Similarity=0.036 Sum_probs=206.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCC--CC-CHHHHHHHHHHHHhcCCh
Q 011323 32 YNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NP-TLSTFNMLMSVCASSKDS 108 (488)
Q Consensus 32 ~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~l~~~~~~~~~~ 108 (488)
-|..+..|+++.|+.+|-+.+..+ |.+.++++.-...+.+.|++++|++--.+.. .| -...|.-...++.-.|++
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~--p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLS--PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccC--CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccH
Confidence 356678999999999999998887 7798999888899999999999998876654 23 345899999999999999
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHh---HHHHHHHHHHHcC---CCCCHHHHHHHHHHHHhc-------
Q 011323 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD---AMFEVFHEMVNAG---IEPNVHTYGALIDGCAKA------- 175 (488)
Q Consensus 109 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~------- 175 (488)
++|+.-|.+-++.. +.+...++-+..++....... .--.++..+.... ......+|..++..+-+.
T Consensus 87 ~eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~ 165 (539)
T KOG0548|consen 87 EEAILAYSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLY 165 (539)
T ss_pred HHHHHHHHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcc
Confidence 99999999888764 446667777777761110000 0001111111000 001111222222222110
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHH--HHHhhCCCCC---------CCCcchHHHHHHHH
Q 011323 176 GQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVL--AEMNAEVHPV---------DPDHITIGALMKAC 244 (488)
Q Consensus 176 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~--~~~~~~~~~~---------~~~~~~~~~l~~~~ 244 (488)
...+...+..-.+...+.. .....|....+-..- .......+.+ ..-..-...+.+..
T Consensus 166 l~d~r~m~a~~~l~~~~~~-----------~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaa 234 (539)
T KOG0548|consen 166 LNDPRLMKADGQLKGVDEL-----------LFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAA 234 (539)
T ss_pred cccHHHHHHHHHHhcCccc-----------cccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHH
Confidence 0011111111111110000 000000000000000 0000000000 00011234455666
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHH-------HHHHHHhc
Q 011323 245 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA-------LIDFAGHA 317 (488)
Q Consensus 245 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------l~~~~~~~ 317 (488)
.+..++..+.+-+....... .+..-++....+|...|.+..+...-.+..+.|.. ...-|+. +..+|.+.
T Consensus 235 ykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~ 311 (539)
T KOG0548|consen 235 YKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKR 311 (539)
T ss_pred HHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhH
Confidence 66777777777777776654 34555666677777777777776666665555432 2222222 33355566
Q ss_pred CCHHHHHHHHHHHHHCCCCccHHH-------------------------HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 011323 318 GKVEAAFEILQEAKNQGISVGIIS-------------------------YSSLMGACSNAKNWQKALELYEHMKSIKLKP 372 (488)
Q Consensus 318 g~~~~a~~~~~~~~~~~~~~~~~~-------------------------~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 372 (488)
++++.++..|.+.......|+... ...-...+.+.|++..|.+.|.+++... +.
T Consensus 312 ~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~ 390 (539)
T KOG0548|consen 312 EDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PE 390 (539)
T ss_pred HhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-Cc
Confidence 777777777777654433322211 1111233445666666666666666555 45
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 011323 373 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN-TITYSILLVACERKDDVEVGLMLLSQAKE 437 (488)
Q Consensus 373 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 437 (488)
|...|..-..+|.+.|.+..|++-.+...+. .|+ ...|..=..++....+++.|.+.|.+.++
T Consensus 391 Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--~p~~~kgy~RKg~al~~mk~ydkAleay~eale 454 (539)
T KOG0548|consen 391 DARLYSNRAACYLKLGEYPEALKDAKKCIEL--DPNFIKAYLRKGAALRAMKEYDKALEAYQEALE 454 (539)
T ss_pred hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5666666666666666666666666655553 232 33444444445555566666666666555
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.3e-07 Score=83.63 Aligned_cols=218 Identities=12% Similarity=0.013 Sum_probs=131.4
Q ss_pred CChhHHHHHHHHHHHcC-CCC--CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 011323 106 KDSEGAFQVLRLVQEAG-LKA--DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAF 182 (488)
Q Consensus 106 ~~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 182 (488)
+..+.++.-+.++.... ..| ....|..+...+...|+.++|...|++..+.. +.+...|+.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 45566666666666432 112 23457777777888888888888888887763 335678888888888888888888
Q ss_pred HHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011323 183 GAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262 (488)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 262 (488)
..|++..+.. +-+..++..+..++...|++++|.+.|+..... .|+..........+...+++++|...|.....
T Consensus 119 ~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~----~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~ 193 (296)
T PRK11189 119 EAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD----DPNDPYRALWLYLAESKLDPKQAKENLKQRYE 193 (296)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 8888887653 234566777777777888888888888887764 34332222222334456678888888865443
Q ss_pred cCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCC---C--CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 011323 263 YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG---V--IP-DEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334 (488)
Q Consensus 263 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~--~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 334 (488)
.. .++... ..+. ....|+...+ ..+..+.+.. + .| ....|..+...+.+.|++++|...|++..+.+
T Consensus 194 ~~-~~~~~~-~~~~--~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 194 KL-DKEQWG-WNIV--EFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred hC-CccccH-HHHH--HHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 22 222111 1222 2234444433 2333333211 0 00 22456666666666777777777777666654
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.5e-06 Score=73.80 Aligned_cols=300 Identities=13% Similarity=0.095 Sum_probs=219.1
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHH-HHHHH
Q 011323 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTY-GALID 170 (488)
Q Consensus 92 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~ 170 (488)
+.--.-+...+...|++..|+.-|....+.+ +.+-.++-.-...|...|+...|+.-+.+.++. +||-..- -.-..
T Consensus 38 vekhlElGk~lla~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~ 114 (504)
T KOG0624|consen 38 VEKHLELGKELLARGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGV 114 (504)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhch
Confidence 3334446677888899999999999888642 333445555567888999999999999999876 6765332 23345
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCH----hH------------HHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCc
Q 011323 171 GCAKAGQVAKAFGAYGIMRSKNVKPDR----VV------------FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH 234 (488)
Q Consensus 171 ~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~------------~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 234 (488)
.+.++|.++.|..-|+...... |+. .. ....+..+...|+...|+.....+... .+-|.
T Consensus 115 vllK~Gele~A~~DF~~vl~~~--~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi---~~Wda 189 (504)
T KOG0624|consen 115 VLLKQGELEQAEADFDQVLQHE--PSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI---QPWDA 189 (504)
T ss_pred hhhhcccHHHHHHHHHHHHhcC--CCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc---Ccchh
Confidence 6789999999999999998763 321 11 122344566789999999999988864 23466
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHH----HHHH
Q 011323 235 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF----LSAL 310 (488)
Q Consensus 235 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~l 310 (488)
..+..-..+|...|++..|+.-++...+.. ..+...+.-+-..+...|+.+.++...++..+.+ ||... |..+
T Consensus 190 ~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKld--pdHK~Cf~~YKkl 266 (504)
T KOG0624|consen 190 SLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLD--PDHKLCFPFYKKL 266 (504)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccC--cchhhHHHHHHHH
Confidence 677788889999999999999998888765 4566777777888889999999999888887753 44321 2111
Q ss_pred ---------HHHHHhcCCHHHHHHHHHHHHHCCCCccHH---HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 011323 311 ---------IDFAGHAGKVEAAFEILQEAKNQGISVGII---SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMN 378 (488)
Q Consensus 311 ---------~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 378 (488)
+......+++.++++-.+...+........ .+..+-.++...|++.+|++...++.+.. +.|..++.
T Consensus 267 kKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d-~~dv~~l~ 345 (504)
T KOG0624|consen 267 KKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID-PDDVQVLC 345 (504)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcC-chHHHHHH
Confidence 223445678888888888877765432233 34445566677889999999999988754 44588888
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHhC
Q 011323 379 ALITALCDGDQLPKTMEVLSDMKSL 403 (488)
Q Consensus 379 ~l~~~~~~~~~~~~a~~~~~~~~~~ 403 (488)
--..+|.-...++.|+.-|+...+.
T Consensus 346 dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 346 DRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 8888999889999999999988774
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.15 E-value=9.1e-07 Score=81.45 Aligned_cols=304 Identities=15% Similarity=0.034 Sum_probs=152.6
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHHcCC-CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHH---H
Q 011323 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGI-EPNV-HTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA---L 203 (488)
Q Consensus 129 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---l 203 (488)
.|..+...+...|+.+.+.+.+....+... .++. .........+...|++++|.+.+++..+.. +.+...+.. .
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~~ 86 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHLGA 86 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHHH
Confidence 444445555555555555555544443211 1121 111122233445666777777666665542 223333331 1
Q ss_pred HHHHHccCCHHHHHHHHHHHhhCCCCCCCCc-chHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcc
Q 011323 204 ITACGQSGAVDRAFDVLAEMNAEVHPVDPDH-ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT 282 (488)
Q Consensus 204 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 282 (488)
.......+..+.+.+.+... .+..|+. .....+...+...|++++|...++...+.. +.+...+..+...+...
T Consensus 87 ~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~ 161 (355)
T cd05804 87 FGLGDFSGMRDHVARVLPLW----APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQ 161 (355)
T ss_pred HHhcccccCchhHHHHHhcc----CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHc
Confidence 11111233444444444331 1122332 223344456667777777777777777655 44556666777777777
Q ss_pred CChHHHHHHHHHHHhCCC-CCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CccHHHH-H--HHHHHHHhcCCH
Q 011323 283 GDWEFACSVYDDMTKKGV-IPDE--VFLSALIDFAGHAGKVEAAFEILQEAKNQGI-SVGIISY-S--SLMGACSNAKNW 355 (488)
Q Consensus 283 ~~~~~a~~~~~~~~~~~~-~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~-~--~l~~~~~~~g~~ 355 (488)
|++++|...+.+...... .|+. ..+..+...+...|++++|..++++...... .+..... + .++..+...|..
T Consensus 162 g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~ 241 (355)
T cd05804 162 GRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHV 241 (355)
T ss_pred CCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCC
Confidence 777777777777665422 1222 2344566677777778888777777653322 1111111 1 222333333432
Q ss_pred HHHHHH---HHHHHhCC-CCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCC------C--CHHHHHHHHHHHhhcC
Q 011323 356 QKALEL---YEHMKSIK-LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLC------P--NTITYSILLVACERKD 423 (488)
Q Consensus 356 ~~a~~~---~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------p--~~~~~~~l~~~~~~~g 423 (488)
..+.+. ........ .............++...|+.++|..+++.+...... . ..........++...|
T Consensus 242 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g 321 (355)
T cd05804 242 DVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEG 321 (355)
T ss_pred ChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcC
Confidence 222222 11111110 0111122234666777888899999998887653211 0 1122223334556889
Q ss_pred CHHHHHHHHHHHHHc
Q 011323 424 DVEVGLMLLSQAKED 438 (488)
Q Consensus 424 ~~~~a~~~~~~~~~~ 438 (488)
+.++|.+.+......
T Consensus 322 ~~~~A~~~L~~al~~ 336 (355)
T cd05804 322 NYATALELLGPVRDD 336 (355)
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999988877653
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.5e-07 Score=79.40 Aligned_cols=271 Identities=8% Similarity=-0.051 Sum_probs=136.7
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHH
Q 011323 89 NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGAL 168 (488)
Q Consensus 89 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 168 (488)
+.|+.....+...+...|+.++|+..|+.....+ +-+........-.+.+.|+.+....+...+.... +.+...|..-
T Consensus 229 r~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d-py~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~ 306 (564)
T KOG1174|consen 229 RCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN-PDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVH 306 (564)
T ss_pred CccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC-hhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhh
Confidence 3455556666666666666666666666555332 1122222222333345566666555555554331 1233333333
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcC
Q 011323 169 IDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 248 (488)
Q Consensus 169 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 248 (488)
.......++++.|+.+-++.++.. +.+...+..-...+...|+.++|.-.|+....- .+.+...|..++..|...|
T Consensus 307 ~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L---ap~rL~~Y~GL~hsYLA~~ 382 (564)
T KOG1174|consen 307 AQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQML---APYRLEIYRGLFHSYLAQK 382 (564)
T ss_pred hhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhc---chhhHHHHHHHHHHHHhhc
Confidence 444444556666666666555442 223333333334555566666666666655432 1233456666666666666
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHH-HH-HHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 011323 249 QVDRAREVYKMIHKYNIKGTPEVYTIAI-NC-CSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326 (488)
Q Consensus 249 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 326 (488)
.+.+|...-...... ++.+..+.+.+. .. +.....-++|.+++++-.+..+. -......+...+...|..+.++.+
T Consensus 383 ~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~-Y~~AV~~~AEL~~~Eg~~~D~i~L 460 (564)
T KOG1174|consen 383 RFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPI-YTPAVNLIAELCQVEGPTKDIIKL 460 (564)
T ss_pred hHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCc-cHHHHHHHHHHHHhhCccchHHHH
Confidence 666665554433332 133344444442 11 22222334565655554443211 223344555556666666666666
Q ss_pred HHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 011323 327 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 369 (488)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 369 (488)
++..... .||....+.|...+...+.+++|.+.|....+.+
T Consensus 461 Le~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 461 LEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred HHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 6665542 4556666666666666666666666666665544
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.14 E-value=4.8e-07 Score=83.28 Aligned_cols=154 Identities=17% Similarity=0.067 Sum_probs=74.5
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcC
Q 011323 102 CASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK----SGKVDAMFEVFHEMVNAGIEPN-VHTYGALIDGCAKAG 176 (488)
Q Consensus 102 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~ 176 (488)
+...|++++|.+.++...+.. |.+...+.. ...+.. .+....+.+.+... .+..|+ ......+...+...|
T Consensus 53 ~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~~~G 128 (355)
T cd05804 53 AWIAGDLPKALALLEQLLDDY-PRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLW--APENPDYWYLLGMLAFGLEEAG 128 (355)
T ss_pred HHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hHHHHHhcccccCchhHHHHHhcc--CcCCCCcHHHHHHHHHHHHHcC
Confidence 445566666666666655542 333333332 112222 23333333333331 111222 223334445556666
Q ss_pred CHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCc--chHHHHHHHHHhcCCHHHHH
Q 011323 177 QVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH--ITIGALMKACANAGQVDRAR 254 (488)
Q Consensus 177 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~ 254 (488)
++++|...+++..+.. +.+...+..+..++...|++++|...+++....... .++. ..|..+...+...|++++|.
T Consensus 129 ~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~-~~~~~~~~~~~la~~~~~~G~~~~A~ 206 (355)
T cd05804 129 QYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC-SSMLRGHNWWHLALFYLERGDYEAAL 206 (355)
T ss_pred CHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC-CcchhHHHHHHHHHHHHHCCCHHHHH
Confidence 6666666666666553 333445555566666666666666666665543111 1221 12334555566666666666
Q ss_pred HHHHHHH
Q 011323 255 EVYKMIH 261 (488)
Q Consensus 255 ~~~~~~~ 261 (488)
.+++...
T Consensus 207 ~~~~~~~ 213 (355)
T cd05804 207 AIYDTHI 213 (355)
T ss_pred HHHHHHh
Confidence 6666653
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.9e-06 Score=87.56 Aligned_cols=369 Identities=9% Similarity=-0.049 Sum_probs=223.9
Q ss_pred HhhhHHHHHHHHHhhhCCCCCHHH--HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHH
Q 011323 71 CKSQKAIKEAFRFFKLVPNPTLST--FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148 (488)
Q Consensus 71 ~~~~~~~~~A~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 148 (488)
+...|++.+|...+.......... ...........|+++.+..+++.+.......+..........+...|+++++..
T Consensus 351 ~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~ 430 (903)
T PRK04841 351 WLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNT 430 (903)
T ss_pred HHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHH
Confidence 344455555555555444322111 111223445567777777776655221111222233444556677899999999
Q ss_pred HHHHHHHcC--C----CCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----hHHHHHHHHHHccCCHHHH
Q 011323 149 VFHEMVNAG--I----EPNV--HTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDR----VVFNALITACGQSGAVDRA 216 (488)
Q Consensus 149 ~~~~~~~~~--~----~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~g~~~~a 216 (488)
.+......- . .+.. .....+...+...|+++.|...+++....-...+. ...+.+...+...|++++|
T Consensus 431 ~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A 510 (903)
T PRK04841 431 LLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARA 510 (903)
T ss_pred HHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 988775431 0 1111 12223334556799999999999987753111121 2345556667789999999
Q ss_pred HHHHHHHhhCCCCCCC---CcchHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCC---CHHHHHHHHHHHHccCChH
Q 011323 217 FDVLAEMNAEVHPVDP---DHITIGALMKACANAGQVDRAREVYKMIHKY----NIKG---TPEVYTIAINCCSQTGDWE 286 (488)
Q Consensus 217 ~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~---~~~~~~~l~~~~~~~~~~~ 286 (488)
...+.+.........+ ...++..+...+...|+++.|...++..... +... ....+..+...+...|+++
T Consensus 511 ~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~ 590 (903)
T PRK04841 511 LAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLD 590 (903)
T ss_pred HHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHH
Confidence 9999887643111111 1224455666788899999999998876542 2111 1233445566777889999
Q ss_pred HHHHHHHHHHhC--CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCccHHH----HHHHHHHHHhcCCHH
Q 011323 287 FACSVYDDMTKK--GVIP--DEVFLSALIDFAGHAGKVEAAFEILQEAKNQG--ISVGIIS----YSSLMGACSNAKNWQ 356 (488)
Q Consensus 287 ~a~~~~~~~~~~--~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~----~~~l~~~~~~~g~~~ 356 (488)
+|...+.+.... ...+ ....+..+...+...|+++.|...+....... ....... ....+..+...|+.+
T Consensus 591 ~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 670 (903)
T PRK04841 591 EAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKE 670 (903)
T ss_pred HHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHH
Confidence 999998886542 1112 23344456667788999999999988875421 1111111 111224455688999
Q ss_pred HHHHHHHHHHhCCCCCC---HHHHHHHHHHHHcCCChhHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHhhcCCHHHH
Q 011323 357 KALELYEHMKSIKLKPT---VSTMNALITALCDGDQLPKTMEVLSDMKSL----GLCPN-TITYSILLVACERKDDVEVG 428 (488)
Q Consensus 357 ~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~a 428 (488)
.|...+........... ...+..+..++...|++++|...+++.... |..+. ..+...+..++.+.|+.++|
T Consensus 671 ~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A 750 (903)
T PRK04841 671 AAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEA 750 (903)
T ss_pred HHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHH
Confidence 99998877654221111 111345667788999999999999987642 33322 34566777888999999999
Q ss_pred HHHHHHHHHcC
Q 011323 429 LMLLSQAKEDG 439 (488)
Q Consensus 429 ~~~~~~~~~~~ 439 (488)
...+.++.+..
T Consensus 751 ~~~L~~Al~la 761 (903)
T PRK04841 751 QRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHHHh
Confidence 99999988753
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.10 E-value=8.7e-09 Score=89.68 Aligned_cols=256 Identities=14% Similarity=0.159 Sum_probs=144.5
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHhcCC
Q 011323 28 QLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKD 107 (488)
Q Consensus 28 ~~~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~ 107 (488)
.+..+....-.|++..++.-++ ..... .+........+.+.+...|+.+.++.-.....+|.......+...+...++
T Consensus 4 eLf~vrn~fy~G~Y~~~i~e~~-~~~~~-~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~~~~~l~av~~la~y~~~~~~ 81 (290)
T PF04733_consen 4 ELFTVRNQFYLGNYQQCINEAS-LKSFS-PENKLERDFYQYRSYIALGQYDSVLSEIKKSSSPELQAVRLLAEYLSSPSD 81 (290)
T ss_dssp TTHHHHHHHCTT-HHHHCHHHH-CHTST-CHHHHHHHHHHHHHHHHTT-HHHHHHHS-TTSSCCCHHHHHHHHHHCTSTT
T ss_pred HHHHHHHHHHhhhHHHHHHHhh-ccCCC-chhHHHHHHHHHHHHHHcCChhHHHHHhccCCChhHHHHHHHHHHHhCccc
Confidence 3456667777888888887666 22222 122334445566667777777777666655556666666555555544344
Q ss_pred hhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 011323 108 SEGAFQVLRLVQEAGLKA-DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYG 186 (488)
Q Consensus 108 ~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 186 (488)
-+.++.-++........+ +..........+...|++++|++++... .+.......+..|.+.++++.|.+.++
T Consensus 82 ~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~ 155 (290)
T PF04733_consen 82 KESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELK 155 (290)
T ss_dssp HHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHH
Confidence 455554444333222222 2222222234455567777777776542 356666667777778888888888888
Q ss_pred HHHhCCCCCCHhHHHHHHHHHHc----cCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011323 187 IMRSKNVKPDRVVFNALITACGQ----SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262 (488)
Q Consensus 187 ~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 262 (488)
.|.+.+ .| .+...+..++.. .+.+.+|..+|+++... ..++..+.+.+..++...|++++|..++.....
T Consensus 156 ~~~~~~--eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~---~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~ 229 (290)
T PF04733_consen 156 NMQQID--ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK---FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALE 229 (290)
T ss_dssp HHHCCS--CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC---S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCC
T ss_pred HHHhcC--Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc---cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 877653 23 333344444332 23577777777777653 334555666666677777777777777777665
Q ss_pred cCCCCCHHHHHHHHHHHHccCCh-HHHHHHHHHHHhC
Q 011323 263 YNIKGTPEVYTIAINCCSQTGDW-EFACSVYDDMTKK 298 (488)
Q Consensus 263 ~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~ 298 (488)
.+ +.++.+...++.+....|+. +.+.+.+.++...
T Consensus 230 ~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 230 KD-PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp C--CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred hc-cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 54 44566666666666666666 5566666666554
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.8e-06 Score=70.78 Aligned_cols=190 Identities=13% Similarity=0.076 Sum_probs=136.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCC--CCCHHHHHH-HHHHHHhc
Q 011323 29 LHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPTLSTFNM-LMSVCASS 105 (488)
Q Consensus 29 ~~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~-l~~~~~~~ 105 (488)
..++-.||+..++..|++++..-.++. |.+..-.+.++..+....++..|..-|++.. -|...-|.. -...+.+.
T Consensus 14 taviy~lI~d~ry~DaI~~l~s~~Er~--p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A 91 (459)
T KOG4340|consen 14 TAVVYRLIRDARYADAIQLLGSELERS--PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKA 91 (459)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHh
Confidence 345667899999999999999888876 6778888888888888899999999998875 355555543 24566778
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHH--HHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 011323 106 KDSEGAFQVLRLVQEAGLKADCKLYTTLITT--CAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFG 183 (488)
Q Consensus 106 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 183 (488)
+.+..|+.+...|... ++...-..-+.+ ....+++..+..+.++....| +..+.+...-...+.|+++.|.+
T Consensus 92 ~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvq 165 (459)
T KOG4340|consen 92 CIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQ 165 (459)
T ss_pred cccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHH
Confidence 8999999998877642 222222222222 235678888888888876432 45555555566678999999999
Q ss_pred HHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCC
Q 011323 184 AYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV 227 (488)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 227 (488)
-|+...+.+--.....|+..+ +..+.|+++.|++...++...+
T Consensus 166 kFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG 208 (459)
T KOG4340|consen 166 KFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERG 208 (459)
T ss_pred HHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhh
Confidence 999887754333456666544 5557889999999998887753
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.3e-06 Score=77.11 Aligned_cols=384 Identities=15% Similarity=0.104 Sum_probs=224.7
Q ss_pred HHHhhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhH
Q 011323 69 NVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA 145 (488)
Q Consensus 69 ~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 145 (488)
....+.|+++.|+.+|-... ++|...|..-..+|+..|++++|++=-.+-.+.+ |.-...|.....++.-.|++++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~-p~w~kgy~r~Gaa~~~lg~~~e 88 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLN-PDWAKGYSRKGAALFGLGDYEE 88 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcC-CchhhHHHHhHHHHHhcccHHH
Confidence 34456688888888886543 5577778777888888888888877666665543 2335678888888888888888
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHHhCCCCCCHhHHHHHH-----HHHHccCCHHHHHHH
Q 011323 146 MFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAF-GAYGIMRSKNVKPDRVVFNALI-----TACGQSGAVDRAFDV 219 (488)
Q Consensus 146 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~ll-----~~~~~~g~~~~a~~~ 219 (488)
|...|.+-++.. +.+...++-+..++. .+.+. +.|. ++..|..+. +.+...-.+.. +
T Consensus 89 A~~ay~~GL~~d-~~n~~L~~gl~~a~~----~~~~~~~~~~---------~p~~~~~l~~~p~t~~~~~~~~~~~---~ 151 (539)
T KOG0548|consen 89 AILAYSEGLEKD-PSNKQLKTGLAQAYL----EDYAADQLFT---------KPYFHEKLANLPLTNYSLSDPAYVK---I 151 (539)
T ss_pred HHHHHHHHhhcC-CchHHHHHhHHHhhh----HHHHhhhhcc---------CcHHHHHhhcChhhhhhhccHHHHH---H
Confidence 888888877662 234556666666651 11111 1110 111111111 01111111111 1
Q ss_pred HHHHhhCCCCCCCCcchHHHHHHHHHhcCCHHHH-HHHH------------HHHHhcC-----------CCCCHHHHHHH
Q 011323 220 LAEMNAEVHPVDPDHITIGALMKACANAGQVDRA-REVY------------KMIHKYN-----------IKGTPEVYTIA 275 (488)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a-~~~~------------~~~~~~~-----------~~~~~~~~~~l 275 (488)
+..+......+..... ...++.+.......+.- ...- ....... ...-..-...+
T Consensus 152 l~~~~~~p~~l~~~l~-d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~l 230 (539)
T KOG0548|consen 152 LEIIQKNPTSLKLYLN-DPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKEL 230 (539)
T ss_pred HHHhhcCcHhhhcccc-cHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHH
Confidence 1111110000000000 00111111110000000 0000 0000000 00011235667
Q ss_pred HHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHH-------HHHHH
Q 011323 276 INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYS-------SLMGA 348 (488)
Q Consensus 276 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-------~l~~~ 348 (488)
.+...+..++..+.+-+....+.. -+..-++....+|...|.+..+...-....+.|-. ...-|+ .+..+
T Consensus 231 gnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a 307 (539)
T KOG0548|consen 231 GNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNA 307 (539)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhh
Confidence 888888899999999999988875 36666777778899999988888777777666532 222233 33446
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHH-------------------------HHHHHHHHcCCChhHHHHHHHHHHhC
Q 011323 349 CSNAKNWQKALELYEHMKSIKLKPTVSTM-------------------------NALITALCDGDQLPKTMEVLSDMKSL 403 (488)
Q Consensus 349 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-------------------------~~l~~~~~~~~~~~~a~~~~~~~~~~ 403 (488)
|.+.++++.++..|.+.......|+...= ..-...+.+.|++..|++.+.+++..
T Consensus 308 ~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr 387 (539)
T KOG0548|consen 308 YTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKR 387 (539)
T ss_pred hhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Confidence 67788899999999887654434433221 11133466789999999999999987
Q ss_pred CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHH---HHHHHHHHHhhcHHHHHHHHHHhhhccCCCCc
Q 011323 404 GLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV---MFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQ 477 (488)
Q Consensus 404 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~li~~~~~~~~~a~~~~~~~~~~~~~~~~ 477 (488)
. +-|...|..-.-+|.+.|.+..|+.-.+...+. .|+.. +....+.-..++|++|.+.++..+..+|.+..
T Consensus 388 ~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e 461 (539)
T KOG0548|consen 388 D-PEDARLYSNRAACYLKLGEYPEALKDAKKCIEL--DPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAE 461 (539)
T ss_pred C-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHH
Confidence 4 567889999999999999999999998888874 34432 22222222234899999999999888876543
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.04 E-value=4.5e-08 Score=85.29 Aligned_cols=249 Identities=15% Similarity=0.114 Sum_probs=138.1
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCCHH
Q 011323 172 CAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD 251 (488)
Q Consensus 172 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 251 (488)
+.-.|.+..++.-.+ .....-..+......+.+++...|+.+.++ .++... -.|.......+...+...++-+
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~---~~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKS---SSPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TT---SSCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccC---CChhHHHHHHHHHHHhCccchH
Confidence 344566776665554 222211122334445667777777665433 333322 1444444444443333323444
Q ss_pred HHHHHHHHHHhcCCC-CCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011323 252 RAREVYKMIHKYNIK-GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 330 (488)
Q Consensus 252 ~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 330 (488)
.+..-++........ .++.........+...|++++|++++... .+.......+..|.+.++++.|.+.++.|
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~ 157 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNM 157 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 444444333222222 22333333344566677788777776532 25666677777788888888888888887
Q ss_pred HHCCCCccHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCC
Q 011323 331 KNQGISVGIISYSSLMGACSN----AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLC 406 (488)
Q Consensus 331 ~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 406 (488)
.+.+ .| .+...+..++.. ...+.+|..+|+++.+. ..+++.+.+.+..++...|++++|.+++.+..+.+ +
T Consensus 158 ~~~~--eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~ 232 (290)
T PF04733_consen 158 QQID--ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-P 232 (290)
T ss_dssp HCCS--CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--C
T ss_pred HhcC--Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-c
Confidence 7643 22 233333333322 33577888888887654 35677778888888888888888888888876543 3
Q ss_pred CCHHHHHHHHHHHhhcCCH-HHHHHHHHHHHHc
Q 011323 407 PNTITYSILLVACERKDDV-EVGLMLLSQAKED 438 (488)
Q Consensus 407 p~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~ 438 (488)
-++.+...++......|+. +.+.+++.++...
T Consensus 233 ~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 233 NDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp CHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred CCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 3566777777777777776 6677777777763
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.99 E-value=8.1e-06 Score=77.37 Aligned_cols=165 Identities=18% Similarity=0.180 Sum_probs=97.6
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCCCCC-HHHHHHHHHHHHhcCChhHHHH
Q 011323 35 LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPT-LSTFNMLMSVCASSKDSEGAFQ 113 (488)
Q Consensus 35 l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~ 113 (488)
-+..|.+++|..+|.+..+.+ ++-.++.+.|.+++|+++-+.-..-. ..+|-.....+-..++.+.|++
T Consensus 810 AieLgMlEeA~~lYr~ckR~D----------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~Ale 879 (1416)
T KOG3617|consen 810 AIELGMLEEALILYRQCKRYD----------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALE 879 (1416)
T ss_pred HHHHhhHHHHHHHHHHHHHHH----------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHH
Confidence 347788888888888776543 45566777788888887776433211 2344444555555666766666
Q ss_pred HHHHHH----------HcC---------CCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 011323 114 VLRLVQ----------EAG---------LKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAK 174 (488)
Q Consensus 114 ~~~~~~----------~~~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 174 (488)
.|++.. ... -..|...|......+-..|+.+.|+.+|..... |.++++..|-
T Consensus 880 yyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~ 950 (1416)
T KOG3617|consen 880 YYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCI 950 (1416)
T ss_pred HHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEee
Confidence 665421 110 011223333444444445555555555554432 4455566666
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHh
Q 011323 175 AGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMN 224 (488)
Q Consensus 175 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 224 (488)
.|+.++|-++-++- -|......+.+.|-..|++.+|...|.+..
T Consensus 951 qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 951 QGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred ccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 77777776665432 255666678888888888888888877654
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.3e-06 Score=71.21 Aligned_cols=84 Identities=13% Similarity=0.029 Sum_probs=35.8
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCCHHHHH
Q 011323 175 AGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 254 (488)
Q Consensus 175 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 254 (488)
.+++..+..++++....| +..+.+...-...+.|+++.|.+-|....+- .|..| ...|+..+ +..+.|+++.|+
T Consensus 125 e~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvqkFqaAlqv-sGyqp-llAYniAL-aHy~~~qyasAL 198 (459)
T KOG4340|consen 125 EGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQKFQAALQV-SGYQP-LLAYNLAL-AHYSSRQYASAL 198 (459)
T ss_pred cccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHHHHHHHHhh-cCCCc-hhHHHHHH-HHHhhhhHHHHH
Confidence 444444544444443222 2223333333334455555555555554432 23322 23333333 233345555555
Q ss_pred HHHHHHHhcC
Q 011323 255 EVYKMIHKYN 264 (488)
Q Consensus 255 ~~~~~~~~~~ 264 (488)
+....+...|
T Consensus 199 k~iSEIieRG 208 (459)
T KOG4340|consen 199 KHISEIIERG 208 (459)
T ss_pred HHHHHHHHhh
Confidence 5555555444
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.1e-05 Score=84.37 Aligned_cols=368 Identities=10% Similarity=-0.002 Sum_probs=225.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCCC----CCHHHHHHHHHHHHhcCCh
Q 011323 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTLSTFNMLMSVCASSKDS 108 (488)
Q Consensus 33 ~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~ 108 (488)
..+...|++.+|...+... +..+................|+.+.+...++.++. .++.........+...|++
T Consensus 349 ~~~~~~g~~~~Al~~a~~a---~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~ 425 (903)
T PRK04841 349 EAWLAQGFPSEAIHHALAA---GDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRY 425 (903)
T ss_pred HHHHHCCCHHHHHHHHHHC---CCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCH
Confidence 3345677877777544433 21111112222223344455777777777776641 2233333445556778999
Q ss_pred hHHHHHHHHHHHcCC------CCC--HHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcC
Q 011323 109 EGAFQVLRLVQEAGL------KAD--CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNV----HTYGALIDGCAKAG 176 (488)
Q Consensus 109 ~~a~~~~~~~~~~~~------~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~ 176 (488)
+++...+......-- .+. ......+...+...|++++|...++.....-...+. ...+.+...+...|
T Consensus 426 ~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G 505 (903)
T PRK04841 426 SEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKG 505 (903)
T ss_pred HHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcC
Confidence 999999987754210 111 122233345566789999999999987763111121 24455666778899
Q ss_pred CHHHHHHHHHHHHhCCC---CCC--HhHHHHHHHHHHccCCHHHHHHHHHHHhhCCC--CCC--C-CcchHHHHHHHHHh
Q 011323 177 QVAKAFGAYGIMRSKNV---KPD--RVVFNALITACGQSGAVDRAFDVLAEMNAEVH--PVD--P-DHITIGALMKACAN 246 (488)
Q Consensus 177 ~~~~a~~~~~~~~~~~~---~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~~--~-~~~~~~~l~~~~~~ 246 (488)
++++|...+++.....- .+. ..++..+...+...|++++|...+++...... +.. + ....+..+...+..
T Consensus 506 ~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 585 (903)
T PRK04841 506 ELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWE 585 (903)
T ss_pred CHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHH
Confidence 99999999988764311 111 23445566778889999999999887654211 111 1 12234445566777
Q ss_pred cCCHHHHHHHHHHHHhcC--CCC--CHHHHHHHHHHHHccCChHHHHHHHHHHHhCC--CCCCHH--HH--HHHHHHHHh
Q 011323 247 AGQVDRAREVYKMIHKYN--IKG--TPEVYTIAINCCSQTGDWEFACSVYDDMTKKG--VIPDEV--FL--SALIDFAGH 316 (488)
Q Consensus 247 ~~~~~~a~~~~~~~~~~~--~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~--~~--~~l~~~~~~ 316 (488)
.|++++|...+....... ..+ ....+..+...+...|+++.|...+....... ...... .. ...+..+..
T Consensus 586 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 665 (903)
T PRK04841 586 WARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQM 665 (903)
T ss_pred hcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHH
Confidence 899999999988765431 111 23345556677888999999999988875421 111111 10 112244556
Q ss_pred cCCHHHHHHHHHHHHHCCCCcc---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHcCC
Q 011323 317 AGKVEAAFEILQEAKNQGISVG---IISYSSLMGACSNAKNWQKALELYEHMKSI----KLKPT-VSTMNALITALCDGD 388 (488)
Q Consensus 317 ~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~ 388 (488)
.|+.+.|...+........... ...+..+..++...|+.++|...+++.... +..++ ..+...+..++.+.|
T Consensus 666 ~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G 745 (903)
T PRK04841 666 TGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQG 745 (903)
T ss_pred CCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcC
Confidence 7899999998877554221111 112456677888999999999999887642 22221 235566677888999
Q ss_pred ChhHHHHHHHHHHhC
Q 011323 389 QLPKTMEVLSDMKSL 403 (488)
Q Consensus 389 ~~~~a~~~~~~~~~~ 403 (488)
+.++|...+.+..+.
T Consensus 746 ~~~~A~~~L~~Al~l 760 (903)
T PRK04841 746 RKSEAQRVLLEALKL 760 (903)
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999998764
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.7e-07 Score=84.98 Aligned_cols=220 Identities=13% Similarity=0.064 Sum_probs=173.1
Q ss_pred HHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCh
Q 011323 206 ACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDW 285 (488)
Q Consensus 206 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 285 (488)
-+.+.|++.+|.-.|+....+. +-+...|..|.......++-..|+..+.+..+.+ +.+..+...|.-.|...|.-
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqd---P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q 369 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQD---PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQ 369 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhC---hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhH
Confidence 3567899999999999988762 2345688888888888999999999999999887 66888899999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHH-----------HHHHhcCCHHHHHHHHHHHHH-CCCCccHHHHHHHHHHHHhcC
Q 011323 286 EFACSVYDDMTKKGVIPDEVFLSALI-----------DFAGHAGKVEAAFEILQEAKN-QGISVGIISYSSLMGACSNAK 353 (488)
Q Consensus 286 ~~a~~~~~~~~~~~~~~~~~~~~~l~-----------~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g 353 (488)
..|...++.-+...++ |..+. ........+....++|-++.. .+..+|+.+...|.-.|--.|
T Consensus 370 ~~Al~~L~~Wi~~~p~-----y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~ 444 (579)
T KOG1125|consen 370 NQALKMLDKWIRNKPK-----YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSG 444 (579)
T ss_pred HHHHHHHHHHHHhCcc-----chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcch
Confidence 9999999887654321 11111 011122234445555655544 444588899999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhhcCCHHHHHHHH
Q 011323 354 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN-TITYSILLVACERKDDVEVGLMLL 432 (488)
Q Consensus 354 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~ 432 (488)
++++|.+.|+.+.... +-|..+||-|...++...+.++|+..|++.++ +.|+ +....-|.-+|...|.+++|.+.|
T Consensus 445 efdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hl 521 (579)
T KOG1125|consen 445 EFDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHL 521 (579)
T ss_pred HHHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHH
Confidence 9999999999998865 56788999999999999999999999999998 5787 456667888999999999999988
Q ss_pred HHHHH
Q 011323 433 SQAKE 437 (488)
Q Consensus 433 ~~~~~ 437 (488)
=.++.
T Consensus 522 L~AL~ 526 (579)
T KOG1125|consen 522 LEALS 526 (579)
T ss_pred HHHHH
Confidence 76553
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.86 E-value=5e-05 Score=72.29 Aligned_cols=137 Identities=17% Similarity=0.200 Sum_probs=80.9
Q ss_pred HHHH-hcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCCC----------------------
Q 011323 33 NRLI-RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN---------------------- 89 (488)
Q Consensus 33 ~~l~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---------------------- 89 (488)
|.|. ..|.+++|.++.+.--+.+ -.-++...+......++.+.|++.|++...
T Consensus 833 NKlyQs~g~w~eA~eiAE~~DRiH----Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~ 908 (1416)
T KOG3617|consen 833 NKLYQSQGMWSEAFEIAETKDRIH----LRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRR 908 (1416)
T ss_pred HHHHHhcccHHHHHHHHhhcccee----hhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHh
Confidence 4343 5789999998877544332 233455567777788899999999987542
Q ss_pred -CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHH
Q 011323 90 -PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGAL 168 (488)
Q Consensus 90 -~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 168 (488)
.|...|.--...+-..|+.+.|+.++..... |-.+++..+-.|+.++|-++-++-. |......|
T Consensus 909 ~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~esg------d~AAcYhl 973 (1416)
T KOG3617|consen 909 KRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEESG------DKAACYHL 973 (1416)
T ss_pred ccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhcc------cHHHHHHH
Confidence 2333333334444456666666666655442 3344555555666666665554422 44445555
Q ss_pred HHHHHhcCCHHHHHHHHHHH
Q 011323 169 IDGCAKAGQVAKAFGAYGIM 188 (488)
Q Consensus 169 ~~~~~~~~~~~~a~~~~~~~ 188 (488)
.+.|-..|++.+|...|.+.
T Consensus 974 aR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 974 ARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred HHHhhhhHHHHHHHHHHHHH
Confidence 66666666666666555543
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.5e-06 Score=79.67 Aligned_cols=238 Identities=11% Similarity=0.080 Sum_probs=183.9
Q ss_pred CCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHH
Q 011323 194 KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 273 (488)
Q Consensus 194 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 273 (488)
+|--..-..+...+...|-...|..+++++. .|..++.+|...|+..+|..+.....+ -+|++..|.
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erle-----------mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc 461 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLE-----------MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYC 461 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHH-----------HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHH
Confidence 3444444566778888999999999998874 566788899999999999999888777 378889999
Q ss_pred HHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcC
Q 011323 274 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 353 (488)
Q Consensus 274 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 353 (488)
.+.+......-+++|.++.+....+ .-..+.......++++++.+.|+.-.+.+ +....+|-.+..+..+.+
T Consensus 462 ~LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqle 533 (777)
T KOG1128|consen 462 LLGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLE 533 (777)
T ss_pred HhhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHh
Confidence 9999888888889999988875443 11112222234789999999998877765 456788888888899999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Q 011323 354 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLS 433 (488)
Q Consensus 354 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 433 (488)
+++.|.+.|....... +.+...||.+-.+|.+.++-.+|...+.+..+.+ .-+...|...+....+.|.+++|++.+.
T Consensus 534 k~q~av~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~ 611 (777)
T KOG1128|consen 534 KEQAAVKAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYH 611 (777)
T ss_pred hhHHHHHHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHH
Confidence 9999999999887764 4567899999999999999999999999998876 5566677777778889999999999998
Q ss_pred HHHHcC-CCCcHHHHHHHHHHH
Q 011323 434 QAKEDG-VIPNLVMFKCIIGMC 454 (488)
Q Consensus 434 ~~~~~~-~~~~~~~~~~li~~~ 454 (488)
++.+.. ...|..+...++...
T Consensus 612 rll~~~~~~~d~~vl~~iv~~~ 633 (777)
T KOG1128|consen 612 RLLDLRKKYKDDEVLLIIVRTV 633 (777)
T ss_pred HHHHhhhhcccchhhHHHHHHH
Confidence 887551 112444444444443
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.84 E-value=7.6e-06 Score=72.47 Aligned_cols=122 Identities=9% Similarity=-0.002 Sum_probs=52.8
Q ss_pred HHccCCHHHHHHHHHHHhhCCCCCCCCc-chHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCC
Q 011323 207 CGQSGAVDRAFDVLAEMNAEVHPVDPDH-ITIGALMKACANAG-QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD 284 (488)
Q Consensus 207 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 284 (488)
+...+..++|+.+..++... .|+. .+|+....++...| ++++++..++.+...+ +.+..+|+.....+.+.|.
T Consensus 47 l~~~e~serAL~lt~~aI~l----nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~ 121 (320)
T PLN02789 47 YASDERSPRALDLTADVIRL----NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGP 121 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHH----CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCc
Confidence 33344555555555555442 2322 12333333333334 3455555555554443 2333344433333333333
Q ss_pred h--HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 011323 285 W--EFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334 (488)
Q Consensus 285 ~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 334 (488)
. +++..+++++.+.... +..+|.....++...|+++++++.+.++.+.+
T Consensus 122 ~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d 172 (320)
T PLN02789 122 DAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEED 172 (320)
T ss_pred hhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC
Confidence 1 3344444444444333 44444444444444455555555555554443
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.7e-05 Score=73.08 Aligned_cols=171 Identities=18% Similarity=0.230 Sum_probs=113.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 011323 240 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 319 (488)
Q Consensus 240 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 319 (488)
.+.+.....+|.+|+.+++.+.+... -..-|..+...|...|+++.|.++|-+.- .++-.|..|.+.|+
T Consensus 738 aieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~k 806 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGK 806 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhcccc
Confidence 44555667778888888887776543 23456677788888888888888875431 24556778888888
Q ss_pred HHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHH
Q 011323 320 VEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSD 399 (488)
Q Consensus 320 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 399 (488)
++.|.++-.+.. |.......|-.-..-+-+.|++.+|.+++-.+. .|+. .|..|-+.|..+..+++.++
T Consensus 807 w~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~k 875 (1636)
T KOG3616|consen 807 WEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVEK 875 (1636)
T ss_pred HHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHHH
Confidence 888887765543 334455666666666777888888877765443 3543 35667778888877777765
Q ss_pred HHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHH
Q 011323 400 MKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 435 (488)
Q Consensus 400 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 435 (488)
-.- ..-..|...+..-+...|+.+.|.+.|-++
T Consensus 876 ~h~---d~l~dt~~~f~~e~e~~g~lkaae~~flea 908 (1636)
T KOG3616|consen 876 HHG---DHLHDTHKHFAKELEAEGDLKAAEEHFLEA 908 (1636)
T ss_pred hCh---hhhhHHHHHHHHHHHhccChhHHHHHHHhh
Confidence 321 112456667777777888888887776433
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.82 E-value=5e-06 Score=83.15 Aligned_cols=233 Identities=12% Similarity=0.042 Sum_probs=152.4
Q ss_pred CCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCC--CCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHH
Q 011323 195 PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD--PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 272 (488)
Q Consensus 195 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 272 (488)
-+...|...|......++.++|.++.++....-.... --...|.++++.-..-|.-+...++|+++.+.. ..-.+|
T Consensus 1456 NSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~ 1533 (1710)
T KOG1070|consen 1456 NSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVH 1533 (1710)
T ss_pred CcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHH
Confidence 3456677777777777888888888777765310000 112356666666666677777777887777653 223567
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-ccHHHHHHHHHHHHh
Q 011323 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGIS-VGIISYSSLMGACSN 351 (488)
Q Consensus 273 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~ 351 (488)
..|...|.+.+.+++|.++++.|.++-- -....|...+..+.+..+-+.|..++.+..+.-.+ -......-.+..-.+
T Consensus 1534 ~~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKKFG-QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHhc-chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh
Confidence 7777788888888888888888776522 35566777777777777777788887777654211 134455555666677
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhhcCCHHHHH
Q 011323 352 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN--TITYSILLVACERKDDVEVGL 429 (488)
Q Consensus 352 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~ 429 (488)
.|+.+.+..+|+...... +.-...|+.++..-.++|+.+.+..+|++....++.|- -..|...+.---..|+-..+.
T Consensus 1613 ~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE 1691 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVE 1691 (1710)
T ss_pred cCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHH
Confidence 788888888887776543 44567788888888888888888888888877766654 234555555445555544443
Q ss_pred HH
Q 011323 430 ML 431 (488)
Q Consensus 430 ~~ 431 (488)
.+
T Consensus 1692 ~V 1693 (1710)
T KOG1070|consen 1692 YV 1693 (1710)
T ss_pred HH
Confidence 33
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.81 E-value=0.00011 Score=71.52 Aligned_cols=185 Identities=16% Similarity=0.198 Sum_probs=88.4
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 011323 102 CASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKA 181 (488)
Q Consensus 102 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 181 (488)
+..++-+++|..+|+..- .+....+.|+. ..++.++|.+.-++.. .+..|..+..+-.+.|...+|
T Consensus 1058 ai~~~LyEEAF~ifkkf~-----~n~~A~~VLie---~i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v~dA 1123 (1666)
T KOG0985|consen 1058 AIENQLYEEAFAIFKKFD-----MNVSAIQVLIE---NIGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLVKDA 1123 (1666)
T ss_pred HhhhhHHHHHHHHHHHhc-----ccHHHHHHHHH---HhhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCchHHH
Confidence 334444555555554432 23333333332 2244455544444332 334566666666666666666
Q ss_pred HHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011323 182 FGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH 261 (488)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 261 (488)
++-|-+. .|+..|..++....+.|.+++..+.+.-..+.. -.|. .=..++-+|++.+++.+..+.+
T Consensus 1124 ieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~--~E~~--id~eLi~AyAkt~rl~elE~fi---- 1189 (1666)
T KOG0985|consen 1124 IESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKV--REPY--IDSELIFAYAKTNRLTELEEFI---- 1189 (1666)
T ss_pred HHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhh--cCcc--chHHHHHHHHHhchHHHHHHHh----
Confidence 5544321 245556666666666666666666555444431 1222 2234555566665554443332
Q ss_pred hcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 011323 262 KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326 (488)
Q Consensus 262 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 326 (488)
.-|+......+.+-|...+.++.|.-+|... .-|..+...+...|++..|.+.
T Consensus 1190 ---~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AVD~ 1242 (1666)
T KOG0985|consen 1190 ---AGPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAVDA 1242 (1666)
T ss_pred ---cCCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHH
Confidence 1234444444555555555555555444322 2244444445555555555433
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.80 E-value=0.00011 Score=66.74 Aligned_cols=152 Identities=11% Similarity=0.058 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHcCCChhHHHHHHH
Q 011323 320 VEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP-TVSTMNALITALCDGDQLPKTMEVLS 398 (488)
Q Consensus 320 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~ 398 (488)
.+....++.++...-...-.-+|-.++....+...++.|..+|.++.+.+..+ .+.++++++.-|| .++..-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHH
Confidence 44555555555543222223456666666677777788888888887665555 5666677776665 467777888887
Q ss_pred HHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcH--HHHHHHHHHHhh--cHHHHHHHHHHhhhccC
Q 011323 399 DMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL--VMFKCIIGMCSR--RYEKARTLNEHVLSFNS 473 (488)
Q Consensus 399 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~--~~~~a~~~~~~~~~~~~ 473 (488)
--... +..++.-....+.-+.+.++-..+..+|++....++.|+. .+|..+|+--+. ++..+.++.++....-|
T Consensus 426 LGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 426 LGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred HHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence 65543 2334455556667777777777788888887777555444 467777754332 56666666666554444
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.78 E-value=5.4e-05 Score=71.16 Aligned_cols=297 Identities=14% Similarity=0.156 Sum_probs=172.2
Q ss_pred cCCCchhHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCCCCCHHHHHHHHHH
Q 011323 22 AHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSV 101 (488)
Q Consensus 22 ~~~~~~~~~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~ 101 (488)
..+-...+..+..+++.|.+..|......-... ..+..+...+.....+..-++.|-.+|+++..++.. +..
T Consensus 612 k~sdgd~laaiqlyika~~p~~a~~~a~n~~~l---~~de~il~~ia~alik~elydkagdlfeki~d~dka-----le~ 683 (1636)
T KOG3616|consen 612 KESDGDGLAAIQLYIKAGKPAKAARAALNDEEL---LADEEILEHIAAALIKGELYDKAGDLFEKIHDFDKA-----LEC 683 (1636)
T ss_pred ccccCccHHHHHHHHHcCCchHHHHhhcCHHHh---hccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCHHHH-----HHH
Confidence 334455677788888888888877665322111 223334444555555656677777777776543322 111
Q ss_pred HHhcCChhHHHHHHHHHH----------------HcCCCCC--------HHHHHHHHHHHHHcCCHhHHHHHHHHHHHcC
Q 011323 102 CASSKDSEGAFQVLRLVQ----------------EAGLKAD--------CKLYTTLITTCAKSGKVDAMFEVFHEMVNAG 157 (488)
Q Consensus 102 ~~~~~~~~~a~~~~~~~~----------------~~~~~~~--------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 157 (488)
+-+-+-+.+|+++-+... ..| ..| .......+.+......+.+|+.+++.+...
T Consensus 684 fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~-q~daainhfiea~~~~kaieaai~akew~kai~ildniqdq- 761 (1636)
T KOG3616|consen 684 FKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIG-QLDAAINHFIEANCLIKAIEAAIGAKEWKKAISILDNIQDQ- 761 (1636)
T ss_pred HHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHH-hHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhHhHHHHhhhh-
Confidence 111122223322221110 000 001 011222344455566777777787777655
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchH
Q 011323 158 IEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 237 (488)
Q Consensus 158 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 237 (488)
..-..-|..+...|+..|+++.|.++|.+. ..++..|..|.+.|.|+.|.++-.+... .......|
T Consensus 762 -k~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~kla~e~~~----~e~t~~~y 827 (1636)
T KOG3616|consen 762 -KTASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAFKLAEECHG----PEATISLY 827 (1636)
T ss_pred -ccccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHHHHHHHhcC----chhHHHHH
Confidence 223445667778888888888888887643 2345667778888888888888777642 23344456
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 011323 238 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 317 (488)
Q Consensus 238 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 317 (488)
.+-..-.-..|.+.+|.+++-.+. .|+ ..|..|-+.|..+..+++..+-.... -..|...+..-+...
T Consensus 828 iakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirlv~k~h~d~---l~dt~~~f~~e~e~~ 895 (1636)
T KOG3616|consen 828 IAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLVEKHHGDH---LHDTHKHFAKELEAE 895 (1636)
T ss_pred HHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHHHHHhChhh---hhHHHHHHHHHHHhc
Confidence 666666677778877777765443 222 24567777788777777665532221 234555666777788
Q ss_pred CCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHH
Q 011323 318 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 363 (488)
Q Consensus 318 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 363 (488)
|++..|.+-|-+.. -|.+-+.+|-..+.|++|.++-+
T Consensus 896 g~lkaae~~flea~---------d~kaavnmyk~s~lw~dayriak 932 (1636)
T KOG3616|consen 896 GDLKAAEEHFLEAG---------DFKAAVNMYKASELWEDAYRIAK 932 (1636)
T ss_pred cChhHHHHHHHhhh---------hHHHHHHHhhhhhhHHHHHHHHh
Confidence 88888887765433 24455666777777777766543
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.76 E-value=3.4e-05 Score=68.38 Aligned_cols=211 Identities=11% Similarity=0.005 Sum_probs=119.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-CHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 011323 98 LMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG-KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG 176 (488)
Q Consensus 98 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 176 (488)
+-.++...++.++|+.+.+.+++.+ +-+..+|+..-.++...| +++++++.++.+.+.. +.+..+|+.....+.+.|
T Consensus 43 ~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~ 120 (320)
T PLN02789 43 FRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLG 120 (320)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcC
Confidence 3344555667777777777777653 334455665555555665 4677777777777653 334455665544444555
Q ss_pred CH--HHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhc---CC--
Q 011323 177 QV--AKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA---GQ-- 249 (488)
Q Consensus 177 ~~--~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~-- 249 (488)
+. ++++..++++.+.. +-+..+|+...-++...|+++++++.++++.... ..+..+|+....++.+. |.
T Consensus 121 ~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d---~~N~sAW~~R~~vl~~~~~l~~~~ 196 (320)
T PLN02789 121 PDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED---VRNNSAWNQRYFVITRSPLLGGLE 196 (320)
T ss_pred chhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC---CCchhHHHHHHHHHHhcccccccc
Confidence 42 55666776666554 3456667766666667777777777777776642 22344555544444333 21
Q ss_pred --HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcc----CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 011323 250 --VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT----GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 316 (488)
Q Consensus 250 --~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 316 (488)
.+........+.... +.+...|+.+...+... +...+|.+.+.+....++. +...+..++..|+.
T Consensus 197 ~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~-s~~al~~l~d~~~~ 267 (320)
T PLN02789 197 AMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN-HVFALSDLLDLLCE 267 (320)
T ss_pred ccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC-cHHHHHHHHHHHHh
Confidence 234555554555443 44555666665555552 2334466666665554332 55566666666654
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.75 E-value=3.9e-06 Score=76.40 Aligned_cols=222 Identities=14% Similarity=0.123 Sum_probs=118.6
Q ss_pred HHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHH
Q 011323 137 CAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRA 216 (488)
Q Consensus 137 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a 216 (488)
+.+.|++.+|.-.|+...+.. +-+...|..|.......++-..|+..+++..+.. +.+......|.-.|...|.-..|
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHH
Confidence 456677777777777766653 3356677777777777777777777777777653 34566666666777777777777
Q ss_pred HHHHHHHhhCCCCCC------CCcchHHHHHHHHHhcCCHHHHHHHHH-HHHhcCCCCCHHHHHHHHHHHHccCChHHHH
Q 011323 217 FDVLAEMNAEVHPVD------PDHITIGALMKACANAGQVDRAREVYK-MIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 289 (488)
Q Consensus 217 ~~~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 289 (488)
++.|+.-....+... ++...-.. ..+.....+....++|- .....+...|+.++..|.-.|.-.|.+++|.
T Consensus 373 l~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 373 LKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 777766544311000 00000000 01111112223333332 2233333355555665555566666666666
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcc-HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011323 290 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVG-IISYSSLMGACSNAKNWQKALELYEHM 365 (488)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~ 365 (488)
..|+..+...+. |...|+.|...++...+.++|+..|.+..+.. |. +.+...|.-.|...|.+++|.+.|-.+
T Consensus 451 Dcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqLq--P~yVR~RyNlgIS~mNlG~ykEA~~hlL~A 524 (579)
T KOG1125|consen 451 DCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQLQ--PGYVRVRYNLGISCMNLGAYKEAVKHLLEA 524 (579)
T ss_pred HHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhcC--CCeeeeehhhhhhhhhhhhHHHHHHHHHHH
Confidence 666665554433 55556666666666666666666666655532 22 223333444555666666665555444
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.73 E-value=5.7e-05 Score=62.21 Aligned_cols=256 Identities=12% Similarity=0.125 Sum_probs=153.6
Q ss_pred hhHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHhcC
Q 011323 27 EQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSK 106 (488)
Q Consensus 27 ~~~~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~ 106 (488)
..+..++...=.|+|..++...+..... +.....-..+.+.+...|.......-.+....+.......+.......+
T Consensus 10 d~LF~iRn~fY~Gnyq~~ine~~~~~~~---~~~~e~d~y~~raylAlg~~~~~~~eI~~~~~~~lqAvr~~a~~~~~e~ 86 (299)
T KOG3081|consen 10 DELFNIRNYFYLGNYQQCINEAEKFSSS---KTDVELDVYMYRAYLALGQYQIVISEIKEGKATPLQAVRLLAEYLELES 86 (299)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHHhhccc---cchhHHHHHHHHHHHHcccccccccccccccCChHHHHHHHHHHhhCcc
Confidence 3445555555678888777766654433 1233333445555555555444333333333333334444444444444
Q ss_pred ChhHH-HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 011323 107 DSEGA-FQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY 185 (488)
Q Consensus 107 ~~~~a-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 185 (488)
+.+.- .++.+++.......+......-...|.+.|++++|++...... +......=+..+.+..+++-|.+.+
T Consensus 87 ~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~l 160 (299)
T KOG3081|consen 87 NKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKEL 160 (299)
T ss_pred hhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44433 3444555554444444444455567788888888888776632 3333333345566778888888888
Q ss_pred HHHHhCCCCCCHhHHHHHHHHHHc----cCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011323 186 GIMRSKNVKPDRVVFNALITACGQ----SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH 261 (488)
Q Consensus 186 ~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 261 (488)
++|.+.. +..|.+.|..++.+ .+.+.+|.-+|+++..+ ..|+..+.+....++...|++++|..+++...
T Consensus 161 k~mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k---~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL 234 (299)
T KOG3081|consen 161 KKMQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK---TPPTPLLLNGQAVCHLQLGRYEEAESLLEEAL 234 (299)
T ss_pred HHHHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc---cCCChHHHccHHHHHHHhcCHHHHHHHHHHHH
Confidence 8888653 55666666666654 35577888888888753 46666677777777888888888888888887
Q ss_pred hcCCCCCHHHHHHHHHHHHccCChHH-HHHHHHHHHhC
Q 011323 262 KYNIKGTPEVYTIAINCCSQTGDWEF-ACSVYDDMTKK 298 (488)
Q Consensus 262 ~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~ 298 (488)
... ..++.+...++.+-...|...+ ..+.+.++...
T Consensus 235 ~kd-~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 235 DKD-AKDPETLANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred hcc-CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 766 4556666666666555665533 44555555554
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.73 E-value=0.0001 Score=71.79 Aligned_cols=182 Identities=11% Similarity=0.034 Sum_probs=129.2
Q ss_pred cCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCCC---CCHHHHHHHHHHHHhcCChhHHHHH
Q 011323 38 QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN---PTLSTFNMLMSVCASSKDSEGAFQV 114 (488)
Q Consensus 38 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~ 114 (488)
+.+...|+..|-+..+.+ +.-...+..++.+++...+...|.+-|.++.+ .+...+......|++..+++.|..+
T Consensus 471 rK~~~~al~ali~alrld--~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I 548 (1238)
T KOG1127|consen 471 RKNSALALHALIRALRLD--VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEI 548 (1238)
T ss_pred hhhHHHHHHHHHHHHhcc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHH
Confidence 455788888888888877 55566667788999888899999999988764 4556778888999999999999988
Q ss_pred HHHHHHcCCCCC--HHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 011323 115 LRLVQEAGLKAD--CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN 192 (488)
Q Consensus 115 ~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 192 (488)
.-..-+.. +.- ...|....-.|.+.++...+..-|+...+.. +.|...|..+..+|...|++..|.+.|.+....
T Consensus 549 ~l~~~qka-~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L- 625 (1238)
T KOG1127|consen 549 CLRAAQKA-PAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL- 625 (1238)
T ss_pred HHHHhhhc-hHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc-
Confidence 33322221 111 1223334455667788888888888887764 447788999999999999999999999887755
Q ss_pred CCCCH-hHHHHHHHHHHccCCHHHHHHHHHHHhh
Q 011323 193 VKPDR-VVFNALITACGQSGAVDRAFDVLAEMNA 225 (488)
Q Consensus 193 ~~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 225 (488)
.|+. ..---.....+..|.+.+++..+..+..
T Consensus 626 -rP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 626 -RPLSKYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred -CcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3332 1111222334567888888887776654
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.71 E-value=6.9e-06 Score=67.49 Aligned_cols=161 Identities=12% Similarity=0.054 Sum_probs=100.7
Q ss_pred CchHHHHHHHHHHHhhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 011323 58 DMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI 134 (488)
Q Consensus 58 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 134 (488)
|.+..+ ......+...|+-+....+..... +.+....+..+....+.|++..|+..+++..... ++|..+|+.+.
T Consensus 64 p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lg 141 (257)
T COG5010 64 PEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLG 141 (257)
T ss_pred cchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHH
Confidence 444444 444445555555555555555432 3444555556667777777777777777776543 56677777777
Q ss_pred HHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHH
Q 011323 135 TTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVD 214 (488)
Q Consensus 135 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 214 (488)
-+|.+.|+++.|..-|.+..+.. .-+....+.+.-.+.-.|+.+.|..++......+ .-|...-..+.......|+++
T Consensus 142 aaldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~ 219 (257)
T COG5010 142 AALDQLGRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFR 219 (257)
T ss_pred HHHHHccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChH
Confidence 77777777777777777766652 2245556666666677777777777777766553 335566666666667777777
Q ss_pred HHHHHHHH
Q 011323 215 RAFDVLAE 222 (488)
Q Consensus 215 ~a~~~~~~ 222 (488)
+|..+...
T Consensus 220 ~A~~i~~~ 227 (257)
T COG5010 220 EAEDIAVQ 227 (257)
T ss_pred HHHhhccc
Confidence 77666544
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.8e-08 Score=54.84 Aligned_cols=32 Identities=53% Similarity=0.865 Sum_probs=15.7
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011323 157 GIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM 188 (488)
Q Consensus 157 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 188 (488)
|+.||..||++||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34445555555555555555555555544444
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.70 E-value=3.7e-06 Score=72.25 Aligned_cols=187 Identities=11% Similarity=0.013 Sum_probs=125.6
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCC-CC-HH
Q 011323 89 NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADC---KLYTTLITTCAKSGKVDAMFEVFHEMVNAGIE-PN-VH 163 (488)
Q Consensus 89 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~-~~ 163 (488)
......+..+...+...|++++|...++.+.... +.+. .++..+..++...|++++|...++.+.+.... |. ..
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 3456677777888889999999999999887653 2222 46677888889999999999999998876321 11 12
Q ss_pred HHHHHHHHHHhc--------CCHHHHHHHHHHHHhCCCCCCH-hHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCc
Q 011323 164 TYGALIDGCAKA--------GQVAKAFGAYGIMRSKNVKPDR-VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH 234 (488)
Q Consensus 164 ~~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 234 (488)
++..+..++... |+++.|.+.|+.+... .|+. ..+..+..... ... ....
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~~~------~~~~--------- 167 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----LRN------RLAG--------- 167 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----HHH------HHHH---------
Confidence 455555555544 6788888888888766 3332 22222211100 000 0000
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHccCChHHHHHHHHHHHhC
Q 011323 235 ITIGALMKACANAGQVDRAREVYKMIHKYNI--KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298 (488)
Q Consensus 235 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 298 (488)
....+...+.+.|++++|...++.+..... +.....+..+..++.+.|++++|...++.+...
T Consensus 168 -~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 168 -KELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred -HHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 112455678889999999999988877532 223578888899999999999999988887765
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.69 E-value=3e-05 Score=77.82 Aligned_cols=205 Identities=12% Similarity=0.054 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCC---CHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchH
Q 011323 162 VHTYGALIDGCAKAGQVAKAFGAYGIMRSK-NVKP---DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 237 (488)
Q Consensus 162 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 237 (488)
...|-..|......++.++|.++.++.... ++.- -...|.++++.-...|.-+...++|+++.+- -.....|
T Consensus 1458 Si~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy----cd~~~V~ 1533 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY----CDAYTVH 1533 (1710)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh----cchHHHH
Confidence 344555555555555555555555554432 1100 1223444444444445555555555555442 1112244
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHh
Q 011323 238 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP-DEVFLSALIDFAGH 316 (488)
Q Consensus 238 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 316 (488)
..|...|.+.+..++|.++++.|.+.- .....+|...+..+.+.++-++|..++.+..+.-+.- ......-.+..-.+
T Consensus 1534 ~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh
Confidence 555555555555555555555555432 2344455555555555555555555555544421110 12223333344445
Q ss_pred cCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 011323 317 AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 372 (488)
Q Consensus 317 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 372 (488)
.|+.+.+..+|+...... +-....|+..++.-.++|+.+.++.+|+++...++.|
T Consensus 1613 ~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred cCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 566666666665555442 2234556666666666666666666666665554443
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.3e-05 Score=66.02 Aligned_cols=119 Identities=17% Similarity=0.180 Sum_probs=84.6
Q ss_pred cCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HcCCC--hhHH
Q 011323 317 AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL-CDGDQ--LPKT 393 (488)
Q Consensus 317 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~--~~~a 393 (488)
.++.+++...++...+.+ +.+...|..+...|...|++++|...|++..+.. +.+...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 455666666676666654 5567777778788888888888888888777765 44666777776653 56565 4788
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHc
Q 011323 394 MEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 438 (488)
Q Consensus 394 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 438 (488)
.+++++..+.+ +-+...+..+...+...|++++|+..|+++.+.
T Consensus 130 ~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 130 REMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 88888877652 335667777777778888888888888887765
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.67 E-value=6.8e-05 Score=67.32 Aligned_cols=162 Identities=13% Similarity=0.071 Sum_probs=125.0
Q ss_pred HHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcC
Q 011323 274 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 353 (488)
Q Consensus 274 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 353 (488)
-..-.+...|+++.|+..++.+...-+. |........+.+.+.++..+|.+.++.+.... +......-.+..+|.+.|
T Consensus 311 G~A~~~~~~~~~d~A~~~l~~L~~~~P~-N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~-P~~~~l~~~~a~all~~g 388 (484)
T COG4783 311 GRALQTYLAGQYDEALKLLQPLIAAQPD-NPYYLELAGDILLEANKAKEAIERLKKALALD-PNSPLLQLNLAQALLKGG 388 (484)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCccHHHHHHHHHHHhcC
Confidence 3344566778999999999998876443 77777788889999999999999999998864 223666777888999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Q 011323 354 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLS 433 (488)
Q Consensus 354 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 433 (488)
++.+|+.+++...... +.|+..|..|..+|...|+..++..-..+ .+...|+++.|..++.
T Consensus 389 ~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE------------------~~~~~G~~~~A~~~l~ 449 (484)
T COG4783 389 KPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAE------------------GYALAGRLEQAIIFLM 449 (484)
T ss_pred ChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHH------------------HHHhCCCHHHHHHHHH
Confidence 9999999999887654 67889999999999999988887765544 3456889999999998
Q ss_pred HHHHc--CCCCcHHHHHHHHHHHhh
Q 011323 434 QAKED--GVIPNLVMFKCIIGMCSR 456 (488)
Q Consensus 434 ~~~~~--~~~~~~~~~~~li~~~~~ 456 (488)
...+. ...|+..-+...|.....
T Consensus 450 ~A~~~~~~~~~~~aR~dari~~~~~ 474 (484)
T COG4783 450 RASQQVKLGFPDWARADARIDQLRQ 474 (484)
T ss_pred HHHHhccCCcHHHHHHHHHHHHHHH
Confidence 88776 334555556666665443
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.67 E-value=3e-06 Score=79.18 Aligned_cols=238 Identities=13% Similarity=0.063 Sum_probs=182.5
Q ss_pred CCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHH
Q 011323 125 ADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALI 204 (488)
Q Consensus 125 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 204 (488)
|--..-..+...+.+.|-...|..+|+++. .|.-++.+|...|+..+|..+..+..+. +||...|..+.
T Consensus 396 p~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LG 464 (777)
T KOG1128|consen 396 PIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLG 464 (777)
T ss_pred CcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhh
Confidence 333344567778888899999999998875 3567788899999999999998888874 78999999999
Q ss_pred HHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCC
Q 011323 205 TACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD 284 (488)
Q Consensus 205 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 284 (488)
.......-+++|.++.+..... +-..+.....+.++++++.+.|+.-...+ +....+|.....+..+.++
T Consensus 465 Dv~~d~s~yEkawElsn~~sar---------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek 534 (777)
T KOG1128|consen 465 DVLHDPSLYEKAWELSNYISAR---------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEK 534 (777)
T ss_pred hhccChHHHHHHHHHhhhhhHH---------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhh
Confidence 9888888889999998876542 11122222345789999999998877765 5567888888888899999
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011323 285 WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 364 (488)
Q Consensus 285 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 364 (488)
+..|.+.|..-..-.+. +...|+.+-.+|.+.++-.+|...+++..+.+ .-+...|...+....+.|.++.|.+.+.+
T Consensus 535 ~q~av~aF~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~r 612 (777)
T KOG1128|consen 535 EQAAVKAFHRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHR 612 (777)
T ss_pred hHHHHHHHHHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHH
Confidence 99999999887775433 66789999999999999999999999999887 44567777888888899999999999988
Q ss_pred HHhCC-CCCCHHHHHHHHHHHH
Q 011323 365 MKSIK-LKPTVSTMNALITALC 385 (488)
Q Consensus 365 ~~~~~-~~~~~~~~~~l~~~~~ 385 (488)
+.... ...|..+...++....
T Consensus 613 ll~~~~~~~d~~vl~~iv~~~~ 634 (777)
T KOG1128|consen 613 LLDLRKKYKDDEVLLIIVRTVL 634 (777)
T ss_pred HHHhhhhcccchhhHHHHHHHH
Confidence 86421 1124444444444433
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.67 E-value=0.00029 Score=64.12 Aligned_cols=409 Identities=11% Similarity=0.127 Sum_probs=238.5
Q ss_pred CchhHHHHHHHH---hcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCC--CCCHHHHHHHH
Q 011323 25 VSEQLHSYNRLI---RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPTLSTFNMLM 99 (488)
Q Consensus 25 ~~~~~~~~~~l~---~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l~ 99 (488)
.+.++.+|..|+ ++..++++++.|+++... +|...-.....+..-...++++...++|.++. .-+...|...+
T Consensus 16 nP~di~sw~~lire~qt~~~~~~R~~YEq~~~~--FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW~lYl 93 (656)
T KOG1914|consen 16 NPYDIDSWSQLIREAQTQPIDKVRETYEQLVNV--FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLWKLYL 93 (656)
T ss_pred CCccHHHHHHHHHHHccCCHHHHHHHHHHHhcc--CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHHHHHH
Confidence 456778888888 455999999999999764 35655555556666666789999999998875 35677777777
Q ss_pred HHHHh-cCChh----HHHHHHHHHH-HcCCCCC-HHHHHHHHHHH---------HHcCCHhHHHHHHHHHHHcCCCC---
Q 011323 100 SVCAS-SKDSE----GAFQVLRLVQ-EAGLKAD-CKLYTTLITTC---------AKSGKVDAMFEVFHEMVNAGIEP--- 160 (488)
Q Consensus 100 ~~~~~-~~~~~----~a~~~~~~~~-~~~~~~~-~~~~~~l~~~~---------~~~~~~~~a~~~~~~~~~~~~~~--- 160 (488)
...-+ .++.. ...+.|+... +.|+.+- ...|+..+..+ ....+.+...+++++++...+.-
T Consensus 94 ~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEk 173 (656)
T KOG1914|consen 94 SYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEK 173 (656)
T ss_pred HHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHH
Confidence 65433 23332 3334444443 4454432 23455544432 33445666778888877532111
Q ss_pred ---CHHHHHHHHHHH-------HhcCCHHHHHHHHHHHHh--CCCCCCHhH---------------HHHHHHHHHccC--
Q 011323 161 ---NVHTYGALIDGC-------AKAGQVAKAFGAYGIMRS--KNVKPDRVV---------------FNALITACGQSG-- 211 (488)
Q Consensus 161 ---~~~~~~~l~~~~-------~~~~~~~~a~~~~~~~~~--~~~~~~~~~---------------~~~ll~~~~~~g-- 211 (488)
|-..|..=|+.. -+...+..|.++++++.. .|+.....+ |..+|.--...+
T Consensus 174 LW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~ 253 (656)
T KOG1914|consen 174 LWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLR 253 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcc
Confidence 111222111111 123456677777777643 233221111 333333211111
Q ss_pred ----C--HHHHHHHHHHHhhCCCCCCCCcch-H----HHHHHHHHhcCCH-------HHHHHHHHHHHhcCCCCCHHHHH
Q 011323 212 ----A--VDRAFDVLAEMNAEVHPVDPDHIT-I----GALMKACANAGQV-------DRAREVYKMIHKYNIKGTPEVYT 273 (488)
Q Consensus 212 ----~--~~~a~~~~~~~~~~~~~~~~~~~~-~----~~l~~~~~~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~ 273 (488)
. .....-.+++...- .+..|+... + ...-+.+...|+. +++..+++.....-...+..+|.
T Consensus 254 t~~~~~~~~Rv~yayeQ~ll~-l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~ 332 (656)
T KOG1914|consen 254 TLDGTMLTRRVMYAYEQCLLY-LGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYF 332 (656)
T ss_pred cccccHHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 01111222222211 122232111 0 1111233334443 34444444443322222333343
Q ss_pred HHHHHHHcc---CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-cHHHHHHHHHHH
Q 011323 274 IAINCCSQT---GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV-GIISYSSLMGAC 349 (488)
Q Consensus 274 ~l~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~ 349 (488)
.+...--.. ...+....+++++...-..--..+|...+....+..-+..|..+|.++.+.+..+ ++.+.++++..|
T Consensus 333 ~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~ 412 (656)
T KOG1914|consen 333 ALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYY 412 (656)
T ss_pred HHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHH
Confidence 333221111 1355666777776654222233567788888888888999999999999887666 677888888876
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhhcCCHHH
Q 011323 350 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN--TITYSILLVACERKDDVEV 427 (488)
Q Consensus 350 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~ 427 (488)
| .++.+-|.++|+-=...- ..++.--...+.-+...++-..|..+|++....+++|+ ...|..++.--..-|+...
T Consensus 413 c-skD~~~AfrIFeLGLkkf-~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~s 490 (656)
T KOG1914|consen 413 C-SKDKETAFRIFELGLKKF-GDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNS 490 (656)
T ss_pred h-cCChhHHHHHHHHHHHhc-CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHH
Confidence 5 578899999998655432 23344445677788888998999999999998766666 5789999999999999999
Q ss_pred HHHHHHHHHHc
Q 011323 428 GLMLLSQAKED 438 (488)
Q Consensus 428 a~~~~~~~~~~ 438 (488)
+.++-+++...
T Consensus 491 i~~lekR~~~a 501 (656)
T KOG1914|consen 491 ILKLEKRRFTA 501 (656)
T ss_pred HHHHHHHHHHh
Confidence 99988876643
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.66 E-value=8.1e-06 Score=70.11 Aligned_cols=183 Identities=14% Similarity=0.078 Sum_probs=129.4
Q ss_pred CCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCC-H---HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-Hh-
Q 011323 125 ADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN-V---HTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD-RV- 198 (488)
Q Consensus 125 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~- 198 (488)
.....+..+...+...|++++|...|+++... .|+ . ..+..+..++...|++++|...++++.+.. |+ ..
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~ 106 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESR--YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH--PNHPDA 106 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCch
Confidence 35667778888899999999999999998876 333 2 467778889999999999999999998763 32 22
Q ss_pred --HHHHHHHHHHcc--------CCHHHHHHHHHHHhhCCCCCCCCcc-hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 011323 199 --VFNALITACGQS--------GAVDRAFDVLAEMNAEVHPVDPDHI-TIGALMKACANAGQVDRAREVYKMIHKYNIKG 267 (488)
Q Consensus 199 --~~~~ll~~~~~~--------g~~~~a~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 267 (488)
++..+..++... |+.++|.+.++.+... .|+.. .+..+..... ... ..
T Consensus 107 ~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~----~p~~~~~~~a~~~~~~----~~~------~~------- 165 (235)
T TIGR03302 107 DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR----YPNSEYAPDAKKRMDY----LRN------RL------- 165 (235)
T ss_pred HHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH----CCCChhHHHHHHHHHH----HHH------HH-------
Confidence 445555555543 6788899999888764 34322 2211111100 000 00
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011323 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI-P-DEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333 (488)
Q Consensus 268 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 333 (488)
......+...+.+.|++.+|...+......... | ....+..+..++.+.|++++|..+++.+...
T Consensus 166 -~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 166 -AGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred -HHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 011235667799999999999999998876432 2 4578889999999999999999999988765
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.6e-05 Score=65.45 Aligned_cols=118 Identities=13% Similarity=0.140 Sum_probs=55.2
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCC--HHHHH
Q 011323 248 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF-AGHAGK--VEAAF 324 (488)
Q Consensus 248 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~--~~~a~ 324 (488)
++.+++...++.....+ +.+...|..+...|...|+++.|...|++..+.... +...+..+..+ +...|+ .++|.
T Consensus 53 ~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 53 QTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred hhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 33444444444444433 344455555555555555555555555555444332 34444444443 233343 24555
Q ss_pred HHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011323 325 EILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 368 (488)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 368 (488)
+++++..+.+ +.+...+..+...+.+.|++++|...|+++.+.
T Consensus 131 ~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 131 EMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5555555443 223444444445555555555555555555443
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.4e-05 Score=65.66 Aligned_cols=157 Identities=14% Similarity=0.057 Sum_probs=89.1
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhc
Q 011323 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA 352 (488)
Q Consensus 273 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 352 (488)
..+-..+...|+-+....+.......... |.......+....+.|++..|...+++..... ++|...|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~-d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPK-DRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcc-cHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 44444555555555555555544332222 44444455666666666666666666666543 55666666666666666
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHH
Q 011323 353 KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLL 432 (488)
Q Consensus 353 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 432 (488)
|+++.|..-|.+..+.. ..++..++.+...+.-.|+.+.|..++......+ .-|...-..+..+....|++++|..+.
T Consensus 148 Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 66666666666665543 2344555566666666666666666666655432 224444555555566666666666655
Q ss_pred H
Q 011323 433 S 433 (488)
Q Consensus 433 ~ 433 (488)
.
T Consensus 226 ~ 226 (257)
T COG5010 226 V 226 (257)
T ss_pred c
Confidence 3
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.65 E-value=4.8e-08 Score=53.88 Aligned_cols=32 Identities=22% Similarity=0.426 Sum_probs=16.2
Q ss_pred CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHH
Q 011323 404 GLCPNTITYSILLVACERKDDVEVGLMLLSQA 435 (488)
Q Consensus 404 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 435 (488)
|+.||..||++++.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44455555555555555555555555555444
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.63 E-value=0.00067 Score=66.48 Aligned_cols=201 Identities=14% Similarity=0.109 Sum_probs=125.6
Q ss_pred CHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 011323 196 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIA 275 (488)
Q Consensus 196 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 275 (488)
.+..|..+..+-.+.|.+.+|++-|-+. .|...|..++....+.|.+++..+.+...++....| .+=+.+
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyika--------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~--~id~eL 1172 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKA--------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREP--YIDSEL 1172 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHhc--------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCc--cchHHH
Confidence 3467888888888888888888776543 233478888888888888888888888777765444 344567
Q ss_pred HHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCH
Q 011323 276 INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 355 (488)
Q Consensus 276 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 355 (488)
+-+|++.++..+.++++ .-|+......+.+-|...|.++.|.-+|.. ..-|..|...+...|++
T Consensus 1173 i~AyAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~---------vSN~a~La~TLV~Lgey 1236 (1666)
T KOG0985|consen 1173 IFAYAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSN---------VSNFAKLASTLVYLGEY 1236 (1666)
T ss_pred HHHHHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHH---------hhhHHHHHHHHHHHHHH
Confidence 77888888877665544 235777777788888888888888777653 34456666667777777
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Q 011323 356 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLS 433 (488)
Q Consensus 356 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 433 (488)
+.|.+.-++. .+..+|-.+-.+|...+.+.-| +|...++-....-..-++.-|...|-+++.+.+++
T Consensus 1237 Q~AVD~aRKA------ns~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~E 1303 (1666)
T KOG0985|consen 1237 QGAVDAARKA------NSTKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLE 1303 (1666)
T ss_pred HHHHHHhhhc------cchhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHH
Confidence 7766554432 2445555555555544433222 12222222233334444555555555555554443
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.63 E-value=4.8e-05 Score=62.63 Aligned_cols=249 Identities=13% Similarity=0.044 Sum_probs=142.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCC
Q 011323 170 DGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 249 (488)
Q Consensus 170 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 249 (488)
+-+.-.|.+..++..-...... +.+...-..+.++|...|.+.....- +.. +-.|.......+......-++
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~~~~e---I~~---~~~~~lqAvr~~a~~~~~e~~ 87 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQIVISE---IKE---GKATPLQAVRLLAEYLELESN 87 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHcccccccccc---ccc---ccCChHHHHHHHHHHhhCcch
Confidence 3444456666666554444332 13344444556666666665443322 221 112222222222222223333
Q ss_pred HHHHH-HHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 011323 250 VDRAR-EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328 (488)
Q Consensus 250 ~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 328 (488)
.+.-. .+.+.+.......+......-...|++.|++++|++..... . +......=+..+.+..+.+.|...++
T Consensus 88 ~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~----~--~lE~~Al~VqI~lk~~r~d~A~~~lk 161 (299)
T KOG3081|consen 88 KKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG----E--NLEAAALNVQILLKMHRFDLAEKELK 161 (299)
T ss_pred hHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc----c--hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33332 33444444433334344444455677888888888777651 1 23333333455667777888888888
Q ss_pred HHHHCCCCccHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCC
Q 011323 329 EAKNQGISVGIISYSSLMGACSN----AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG 404 (488)
Q Consensus 329 ~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 404 (488)
.|.+-. +..+.+.|..++.+ .+....|.-+|++|.+. .+|+..+.+....++...|++++|..+++..+...
T Consensus 162 ~mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd 237 (299)
T KOG3081|consen 162 KMQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD 237 (299)
T ss_pred HHHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence 887643 45666666666543 34577888888888764 36888888888888888888888888888887653
Q ss_pred CCCCHHHHHHHHHHHhhcCCH-HHHHHHHHHHHH
Q 011323 405 LCPNTITYSILLVACERKDDV-EVGLMLLSQAKE 437 (488)
Q Consensus 405 ~~p~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~ 437 (488)
.-++.+...++..-...|.. +...+.+.++..
T Consensus 238 -~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 238 -AKDPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred -CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 44566666666666666654 344555566554
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=4.5e-05 Score=75.63 Aligned_cols=144 Identities=11% Similarity=0.006 Sum_probs=93.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHhcCCh
Q 011323 29 LHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDS 108 (488)
Q Consensus 29 ~~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 108 (488)
...++.+...|++++|.++.++..+.. |....++...+.++.+.++..++..+ .++.......++
T Consensus 35 ~~Li~~~~~~~~~deai~i~~~~l~~~--P~~i~~yy~~G~l~~q~~~~~~~~lv-------------~~l~~~~~~~~~ 99 (906)
T PRK14720 35 DDLIDAYKSENLTDEAKDICEEHLKEH--KKSISALYISGILSLSRRPLNDSNLL-------------NLIDSFSQNLKW 99 (906)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhC--CcceehHHHHHHHHHhhcchhhhhhh-------------hhhhhcccccch
Confidence 333444448999999999999888765 66666666666666666665444333 334444444455
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011323 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM 188 (488)
Q Consensus 109 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 188 (488)
.-...+...|... .-+...+..+..+|-+.|+.+++.++|+++++.. +-|..+.|.+.-.|... ++++|.+++.+.
T Consensus 100 ~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KA 175 (906)
T PRK14720 100 AIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKA 175 (906)
T ss_pred hHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHH
Confidence 3344444444442 3344567777777777888888888888877765 44677777777777777 777777777766
Q ss_pred HhC
Q 011323 189 RSK 191 (488)
Q Consensus 189 ~~~ 191 (488)
...
T Consensus 176 V~~ 178 (906)
T PRK14720 176 IYR 178 (906)
T ss_pred HHH
Confidence 544
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=5.4e-06 Score=64.49 Aligned_cols=95 Identities=8% Similarity=-0.107 Sum_probs=55.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 011323 95 FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAK 174 (488)
Q Consensus 95 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 174 (488)
+......+...|++++|...|+...... +.+...|..+..++...|++++|...|+...... +.+...+..+..++..
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHH
Confidence 3344455555666666666666655543 3455566666666666666666666666666543 3345555666666666
Q ss_pred cCCHHHHHHHHHHHHhC
Q 011323 175 AGQVAKAFGAYGIMRSK 191 (488)
Q Consensus 175 ~~~~~~a~~~~~~~~~~ 191 (488)
.|++++|...|+.....
T Consensus 105 ~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 105 MGEPGLAREAFQTAIKM 121 (144)
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 66666666666665554
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.56 E-value=0.00034 Score=68.32 Aligned_cols=127 Identities=10% Similarity=-0.017 Sum_probs=78.2
Q ss_pred hhHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHH
Q 011323 27 EQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCA 103 (488)
Q Consensus 27 ~~~~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~ 103 (488)
+--.+..++....+.+.|..+.-...+.........-....+-++...++...|+..|+... +.|..+|..+..+|.
T Consensus 528 aaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~ 607 (1238)
T KOG1127|consen 528 AAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYP 607 (1238)
T ss_pred hHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHH
Confidence 33344455556677777777744443332110111111114445666777888888887654 456678888999999
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHHcCCHhHHHHHHHHHHH
Q 011323 104 SSKDSEGAFQVLRLVQEAGLKADCK-LYTTLITTCAKSGKVDAMFEVFHEMVN 155 (488)
Q Consensus 104 ~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~ 155 (488)
++|++..|+++|.+.... .|+.. .--.....-+..|.+.++.+.+.....
T Consensus 608 ~sGry~~AlKvF~kAs~L--rP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 608 ESGRYSHALKVFTKASLL--RPLSKYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred hcCceehHHHhhhhhHhc--CcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 999999999999888764 34322 222223334567888888888877654
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.2e-05 Score=62.51 Aligned_cols=90 Identities=8% Similarity=-0.049 Sum_probs=39.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCH
Q 011323 346 MGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 425 (488)
Q Consensus 346 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 425 (488)
...+...|++++|...|+...... +.+...|..+..++...|++++|+..|+...... +.+...+..+..++...|++
T Consensus 31 g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g~~ 108 (144)
T PRK15359 31 GYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMGEP 108 (144)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCH
Confidence 334444444444444444444333 2334444444444444444444444444444321 22334444444444444444
Q ss_pred HHHHHHHHHHHH
Q 011323 426 EVGLMLLSQAKE 437 (488)
Q Consensus 426 ~~a~~~~~~~~~ 437 (488)
++|+..|+...+
T Consensus 109 ~eAi~~~~~Al~ 120 (144)
T PRK15359 109 GLAREAFQTAIK 120 (144)
T ss_pred HHHHHHHHHHHH
Confidence 444444444443
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=0.0001 Score=72.26 Aligned_cols=182 Identities=10% Similarity=0.052 Sum_probs=134.0
Q ss_pred CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 011323 231 DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL 310 (488)
Q Consensus 231 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 310 (488)
..+...+..|..+..+.|.+++|..+++.+.+.. +.+......+...+.+.+++++|...+++.....+. +......+
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~ 160 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLE 160 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHH
Confidence 4456678888888888999999999999888875 556777888888899999999999999998887655 67777888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCh
Q 011323 311 IDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 390 (488)
Q Consensus 311 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 390 (488)
..++.+.|++++|..+|+++...+ +.+..++..+..++...|+.++|...|+...+.. .+...-|+.++. +.
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~~------~~ 232 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRLV------DL 232 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHHH------HH
Confidence 888888999999999999988844 4457888888888999999999999999887654 344555555443 23
Q ss_pred hHHHHHHHHHHhC----CCCCCHHHHHHHHHHHhhc
Q 011323 391 PKTMEVLSDMKSL----GLCPNTITYSILLVACERK 422 (488)
Q Consensus 391 ~~a~~~~~~~~~~----~~~p~~~~~~~l~~~~~~~ 422 (488)
..-..+++++.-. |.+.........+.-+.+.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (694)
T PRK15179 233 NADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGRR 268 (694)
T ss_pred HHHHHHHHHcCcccccCCCceeeeeHHHHHHHHhhc
Confidence 3344556665432 2333344555555555543
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.49 E-value=0.0015 Score=63.27 Aligned_cols=205 Identities=11% Similarity=0.085 Sum_probs=103.9
Q ss_pred ccccCCCchhHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCCC--CCHHHHH
Q 011323 19 ANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--PTLSTFN 96 (488)
Q Consensus 19 ~~~~~~~~~~~~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~ 96 (488)
+.+|+...+.+...-.+++.|+.++|..+++.....+ +.+..+...+-.++...++.++|..+|+++.. |+.....
T Consensus 37 kk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~--~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~eell~ 114 (932)
T KOG2053|consen 37 KKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLK--GTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPSEELLY 114 (932)
T ss_pred HHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCC--CCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCcHHHHH
Confidence 4455555555555555667777777777776665444 44666666677777777777777777777653 4444444
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc-CC---------HhHHHHHHHHHHHcC-CCCCHHHH
Q 011323 97 MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS-GK---------VDAMFEVFHEMVNAG-IEPNVHTY 165 (488)
Q Consensus 97 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~---------~~~a~~~~~~~~~~~-~~~~~~~~ 165 (488)
.+..+|.+-+++.+-.+.--++-+. .+-+...+=.+++...+. .. ..-|.+.++.+.+.+ ..-+..-.
T Consensus 115 ~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~ 193 (932)
T KOG2053|consen 115 HLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEI 193 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHH
Confidence 5555666666555443333333221 223333333333333322 11 112444445544432 11111111
Q ss_pred HHHHHHHHhcCCHHHHHHHHH-HHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhC
Q 011323 166 GALIDGCAKAGQVAKAFGAYG-IMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE 226 (488)
Q Consensus 166 ~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 226 (488)
..-...+-..|++++|++++. ...+.-...+...-+.-+..+...+++.+..++-.++...
T Consensus 194 ~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k 255 (932)
T KOG2053|consen 194 ILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEK 255 (932)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHh
Confidence 122223334566777777763 2222222223333344455555666666666666665553
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=0.00026 Score=70.44 Aligned_cols=150 Identities=9% Similarity=0.011 Sum_probs=78.2
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHH
Q 011323 89 NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGAL 168 (488)
Q Consensus 89 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 168 (488)
+.+...+..|+..+...+++++|.++.+...+.. +-....|-.+...+.+.++...+.-+ . +
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv--~---------------~ 89 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL--N---------------L 89 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh--h---------------h
Confidence 4556677777777777788888888777655542 22233344444455555554444333 2 2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcC
Q 011323 169 IDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 248 (488)
Q Consensus 169 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 248 (488)
+.......++.-+..++..|...+ -+...+..+..+|-+.|+.+++..+++++..-. +.|..+.+.+...|...
T Consensus 90 l~~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D---~~n~~aLNn~AY~~ae~- 163 (906)
T PRK14720 90 IDSFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD---RDNPEIVKKLATSYEEE- 163 (906)
T ss_pred hhhcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC---cccHHHHHHHHHHHHHh-
Confidence 222222333333333333343321 233455555666666666666666666665531 22344555555555555
Q ss_pred CHHHHHHHHHHHHh
Q 011323 249 QVDRAREVYKMIHK 262 (488)
Q Consensus 249 ~~~~a~~~~~~~~~ 262 (488)
++++|.+++.++..
T Consensus 164 dL~KA~~m~~KAV~ 177 (906)
T PRK14720 164 DKEKAITYLKKAIY 177 (906)
T ss_pred hHHHHHHHHHHHHH
Confidence 66666665555543
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.1e-05 Score=62.50 Aligned_cols=105 Identities=11% Similarity=0.023 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 011323 339 IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 418 (488)
Q Consensus 339 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 418 (488)
......+...+...|++++|...++.+...+ +.+...+..+..++...|++++|...++...+.+ +.+...+..+...
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~ 94 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAEC 94 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHH
Confidence 3445555666667777777777777766554 3456666666677777777777777777666542 4445666666667
Q ss_pred HhhcCCHHHHHHHHHHHHHcCCCCcHHHH
Q 011323 419 CERKDDVEVGLMLLSQAKEDGVIPNLVMF 447 (488)
Q Consensus 419 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 447 (488)
+...|++++|...|++..+. .|+...+
T Consensus 95 ~~~~g~~~~A~~~~~~al~~--~p~~~~~ 121 (135)
T TIGR02552 95 LLALGEPESALKALDLAIEI--CGENPEY 121 (135)
T ss_pred HHHcCCHHHHHHHHHHHHHh--ccccchH
Confidence 77777777777777766663 3444433
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=4.1e-05 Score=75.03 Aligned_cols=182 Identities=9% Similarity=0.091 Sum_probs=141.1
Q ss_pred CCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCc-chHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHH
Q 011323 192 NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH-ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 270 (488)
Q Consensus 192 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 270 (488)
..+.+...+..|.....+.|..++|..+++...+- .|+. .....+..++.+.+++++|...++...... +.+..
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~----~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~ 155 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQR----FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAR 155 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh----CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHH
Confidence 34667889999999999999999999999999864 5664 456677888999999999999999999987 67888
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHH
Q 011323 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 350 (488)
Q Consensus 271 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 350 (488)
....+..++.+.|++++|..+|+++...+.. +..++..+..++...|+.++|...|+...+.. .+....|+..+.
T Consensus 156 ~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~-~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~~--- 230 (694)
T PRK15179 156 EILLEAKSWDEIGQSEQADACFERLSRQHPE-FENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRLV--- 230 (694)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHHH---
Confidence 9999999999999999999999999985443 57889999999999999999999999998764 445566666553
Q ss_pred hcCCHHHHHHHHHHHHhC----CCCCCHHHHHHHHHHHHc
Q 011323 351 NAKNWQKALELYEHMKSI----KLKPTVSTMNALITALCD 386 (488)
Q Consensus 351 ~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~ 386 (488)
++..-..+++++.-. |..........++..|.+
T Consensus 231 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (694)
T PRK15179 231 ---DLNADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGR 267 (694)
T ss_pred ---HHHHHHHHHHHcCcccccCCCceeeeeHHHHHHHHhh
Confidence 333344555555422 222233344455555544
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.44 E-value=0.00038 Score=62.73 Aligned_cols=141 Identities=14% Similarity=0.057 Sum_probs=89.6
Q ss_pred HHHHHccCCHHHHHHHHHHHhhCCCCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcc
Q 011323 204 ITACGQSGAVDRAFDVLAEMNAEVHPVDPD-HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT 282 (488)
Q Consensus 204 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 282 (488)
.-.+...|+.++|+..++.+... .|+ ...+......+...++..+|.+.++++.... +......-.+..++.+.
T Consensus 313 A~~~~~~~~~d~A~~~l~~L~~~----~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~-P~~~~l~~~~a~all~~ 387 (484)
T COG4783 313 ALQTYLAGQYDEALKLLQPLIAA----QPDNPYYLELAGDILLEANKAKEAIERLKKALALD-PNSPLLQLNLAQALLKG 387 (484)
T ss_pred HHHHHHhcccchHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCccHHHHHHHHHHHhc
Confidence 33445667777777777777664 333 3334445566777777777777777777654 33355566667777777
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHH
Q 011323 283 GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 362 (488)
Q Consensus 283 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 362 (488)
|++.+|+.+++........ |...|..|..+|...|+..++..-.. +.|...|+++.|...+
T Consensus 388 g~~~eai~~L~~~~~~~p~-dp~~w~~LAqay~~~g~~~~a~~A~A------------------E~~~~~G~~~~A~~~l 448 (484)
T COG4783 388 GKPQEAIRILNRYLFNDPE-DPNGWDLLAQAYAELGNRAEALLARA------------------EGYALAGRLEQAIIFL 448 (484)
T ss_pred CChHHHHHHHHHHhhcCCC-CchHHHHHHHHHHHhCchHHHHHHHH------------------HHHHhCCCHHHHHHHH
Confidence 7777777777776665443 66777777777777777666554332 3455566777777666
Q ss_pred HHHHhC
Q 011323 363 EHMKSI 368 (488)
Q Consensus 363 ~~~~~~ 368 (488)
....+.
T Consensus 449 ~~A~~~ 454 (484)
T COG4783 449 MRASQQ 454 (484)
T ss_pred HHHHHh
Confidence 666543
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.41 E-value=0.00033 Score=57.47 Aligned_cols=186 Identities=13% Similarity=0.078 Sum_probs=97.9
Q ss_pred CCHHHHHHHHHHHHhC---C-CCCCHh-HHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCc-chHHHHHHHHHhcCC
Q 011323 176 GQVAKAFGAYGIMRSK---N-VKPDRV-VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH-ITIGALMKACANAGQ 249 (488)
Q Consensus 176 ~~~~~a~~~~~~~~~~---~-~~~~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~ 249 (488)
.+.++..+++.++... | ..++.. .|..++-+....|+.+.|..+++++..+. |.. ..-..-...+-..|+
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f----p~S~RV~~lkam~lEa~~~ 101 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF----PGSKRVGKLKAMLLEATGN 101 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC----CCChhHHHHHHHHHHHhhc
Confidence 3455555555555422 2 233332 23444455556666666666666665542 221 111111122344566
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011323 250 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 329 (488)
Q Consensus 250 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 329 (488)
+++|.++++.+.+.+ +.|..++.--+...-..|+.-+|++-+.+..+.-+ .|...|.-+...|...|+++.|.-.+++
T Consensus 102 ~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~-~D~EAW~eLaeiY~~~~~f~kA~fClEE 179 (289)
T KOG3060|consen 102 YKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFM-NDQEAWHELAEIYLSEGDFEKAAFCLEE 179 (289)
T ss_pred hhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHhHhHHHHHHHHHHH
Confidence 666666666666655 44555555555555555665566666666555422 3666666666666666666666666666
Q ss_pred HHHCCCCccHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhC
Q 011323 330 AKNQGISVGIISYSSLMGACSNAK---NWQKALELYEHMKSI 368 (488)
Q Consensus 330 ~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~ 368 (488)
+.-.. |.++..+..+...+...| +.+.+.+.|.+..+.
T Consensus 180 ~ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 180 LLLIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 66543 333444444444443333 344555666665543
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.41 E-value=2.1e-05 Score=60.86 Aligned_cols=96 Identities=13% Similarity=0.126 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 011323 305 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384 (488)
Q Consensus 305 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 384 (488)
.....+...+...|++++|...++.+...+ +.+...+..+...+...|++++|...++...+.+ +.+...+..+...+
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~ 95 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECL 95 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 334445555566666666666666665543 3355566666666666666666666666665544 34455555566666
Q ss_pred HcCCChhHHHHHHHHHHh
Q 011323 385 CDGDQLPKTMEVLSDMKS 402 (488)
Q Consensus 385 ~~~~~~~~a~~~~~~~~~ 402 (488)
...|++++|...|+...+
T Consensus 96 ~~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 96 LALGEPESALKALDLAIE 113 (135)
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 666666666666666665
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.38 E-value=0.00062 Score=55.90 Aligned_cols=152 Identities=15% Similarity=0.127 Sum_probs=65.7
Q ss_pred ChhHHHHHHHHHHH---cC-CCCCHH-HHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 011323 107 DSEGAFQVLRLVQE---AG-LKADCK-LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKA 181 (488)
Q Consensus 107 ~~~~a~~~~~~~~~---~~-~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 181 (488)
++++.++++..+.. .| ..++.. .|..++-+....|+.+-|...++.+...- +-+...-..-...+-..|.+++|
T Consensus 27 nseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~A 105 (289)
T KOG3060|consen 27 NSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKEA 105 (289)
T ss_pred CHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhhH
Confidence 44555555544432 12 223332 23444444455555555555555554431 11111111111222334555555
Q ss_pred HHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011323 182 FGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH 261 (488)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 261 (488)
+++|+.+.+.. +.|..++---+...-..|..-+|++-+.+.... +..|...|.-+...|...|++++|.-.++++.
T Consensus 106 ~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~---F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 106 IEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK---FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred HHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH---hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 55555555443 333333333333333344444444444444432 23344455555555555555555555555444
Q ss_pred hc
Q 011323 262 KY 263 (488)
Q Consensus 262 ~~ 263 (488)
-.
T Consensus 182 l~ 183 (289)
T KOG3060|consen 182 LI 183 (289)
T ss_pred Hc
Confidence 43
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.0002 Score=56.03 Aligned_cols=126 Identities=13% Similarity=0.078 Sum_probs=69.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc--cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHH
Q 011323 307 LSALIDFAGHAGKVEAAFEILQEAKNQGISV--GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV--STMNALIT 382 (488)
Q Consensus 307 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~ 382 (488)
|..++..+ ..++...+...++.+.+....- .....-.+...+...|++++|...|+.+......|+. .....+..
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~ 93 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLAR 93 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 33334333 3566666666666666543111 1223333445666677777777777776654422221 12333556
Q ss_pred HHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHH
Q 011323 383 ALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 435 (488)
Q Consensus 383 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 435 (488)
.+...|++++|+..++..... ......+......+.+.|++++|...|+..
T Consensus 94 ~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 94 ILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 666777777777777553322 233445556667777777777777777653
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.17 E-value=6.2e-05 Score=68.17 Aligned_cols=129 Identities=9% Similarity=0.046 Sum_probs=104.0
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 011323 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALID 170 (488)
Q Consensus 91 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 170 (488)
+...-..++..+...++++.|+++|+++.+.. |+ ....++..+...++-.+|.+++++..+.. +.+......-..
T Consensus 168 ~NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~ 242 (395)
T PF09295_consen 168 NNYLVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAE 242 (395)
T ss_pred chHHHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 44556677788888899999999999998764 44 34457888888888899999999988653 446777777788
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhh
Q 011323 171 GCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNA 225 (488)
Q Consensus 171 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 225 (488)
.+.+.++.+.|+.+.+++.... +-+-.+|..|..+|...|+++.|+..++.+..
T Consensus 243 fLl~k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 243 FLLSKKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred HHHhcCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 8899999999999999998773 33456999999999999999999999988754
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.00027 Score=55.25 Aligned_cols=115 Identities=12% Similarity=0.065 Sum_probs=49.6
Q ss_pred cCChhHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCCHH
Q 011323 105 SKDSEGAFQVLRLVQEAGLKAD---CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNV--HTYGALIDGCAKAGQVA 179 (488)
Q Consensus 105 ~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~ 179 (488)
.++...+...++.+.... +.+ ....-.+...+...|++++|...|+........|+. .....+...+...|+++
T Consensus 24 ~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred CCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 444555555555554432 222 122223334444555555555555555544311111 12233444455555555
Q ss_pred HHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHH
Q 011323 180 KAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAE 222 (488)
Q Consensus 180 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 222 (488)
+|+..++..... ......+.....++.+.|++++|...|+.
T Consensus 103 ~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 103 EALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 555555442222 11223333444445555555555555443
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.00013 Score=66.15 Aligned_cols=120 Identities=17% Similarity=0.149 Sum_probs=51.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 011323 240 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 319 (488)
Q Consensus 240 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 319 (488)
++..+...++++.|..+++++.+.. |+ ....++..+...++-.+|.+++.+..+.... +...+..-...+.+.++
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~-d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQ-DSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCC
Confidence 3333444444555555555444432 11 2223344444444444444444444433222 33333333444444444
Q ss_pred HHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011323 320 VEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 365 (488)
Q Consensus 320 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 365 (488)
++.|+.+.+++.+.. +.+..+|..|..+|.+.|+++.|...++.+
T Consensus 250 ~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 250 YELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 444444444444432 222334444444444444444444444433
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.11 E-value=6.6e-06 Score=46.14 Aligned_cols=33 Identities=42% Similarity=0.743 Sum_probs=23.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 011323 164 TYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD 196 (488)
Q Consensus 164 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 196 (488)
+|++++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 567777777777777777777777777776665
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.10 E-value=6.1e-06 Score=46.31 Aligned_cols=33 Identities=30% Similarity=0.665 Sum_probs=18.5
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC
Q 011323 376 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 408 (488)
Q Consensus 376 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~ 408 (488)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 455555555555555555555555555555554
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.08 E-value=7e-06 Score=45.66 Aligned_cols=32 Identities=44% Similarity=0.756 Sum_probs=17.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 011323 164 TYGALIDGCAKAGQVAKAFGAYGIMRSKNVKP 195 (488)
Q Consensus 164 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 195 (488)
+|+.++.+|++.|+++.|.++|+.|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555555544
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=98.06 E-value=9.6e-05 Score=67.27 Aligned_cols=120 Identities=11% Similarity=0.148 Sum_probs=68.0
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHH
Q 011323 336 SVGIISYSSLMGACSNAKNWQKALELYEHMKSI--KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS 413 (488)
Q Consensus 336 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~ 413 (488)
+.+...+..++..+....+.+.+..++-+.+.. ....-..|..++++.|.+.|..++++.+++.=...|+-||..+++
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 445555555566555555566666666555532 111112333466666666666666666666666666666666666
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHh
Q 011323 414 ILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS 455 (488)
Q Consensus 414 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 455 (488)
.|+..+.+.|++..|.++...|...+...+..++...+..|.
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~ 184 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCY 184 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHH
Confidence 666666666666666666666655555445555544444443
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.03 E-value=1.1e-05 Score=44.77 Aligned_cols=32 Identities=44% Similarity=0.756 Sum_probs=17.0
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCC
Q 011323 411 TYSILLVACERKDDVEVGLMLLSQAKEDGVIP 442 (488)
Q Consensus 411 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 442 (488)
+|+.++.+|.+.|+++.|.++|++|.+.|+.|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555555444
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00013 Score=51.71 Aligned_cols=76 Identities=17% Similarity=0.408 Sum_probs=46.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHcC--------CHhHHHHHHHHHHHcCCCCCHHHHHHH
Q 011323 98 LMSVCASSKDSEGAFQVLRLVQEAGL-KADCKLYTTLITTCAKSG--------KVDAMFEVFHEMVNAGIEPNVHTYGAL 168 (488)
Q Consensus 98 l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~~l 168 (488)
.|.-+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. +....+.++++|+..+++|+..+|+.+
T Consensus 31 ~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYniv 110 (120)
T PF08579_consen 31 NINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIV 110 (120)
T ss_pred HHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHH
Confidence 34445555677777777777777776 667777777776665542 223345566666666666666666666
Q ss_pred HHHHH
Q 011323 169 IDGCA 173 (488)
Q Consensus 169 ~~~~~ 173 (488)
+..+.
T Consensus 111 l~~Ll 115 (120)
T PF08579_consen 111 LGSLL 115 (120)
T ss_pred HHHHH
Confidence 65544
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00028 Score=64.33 Aligned_cols=120 Identities=15% Similarity=0.184 Sum_probs=59.6
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcch
Q 011323 159 EPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK--NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 236 (488)
Q Consensus 159 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 236 (488)
+.+......++..+....+.+.+..++-+.+.. ....-..|..++++.|.+.|..+.++.+++.=.. .|+-||.++
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~--yGiF~D~~s 140 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQ--YGIFPDNFS 140 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhh--cccCCChhh
Confidence 334444555555555555555555555555433 1111223334555555555555555555554333 355555555
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 011323 237 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCS 280 (488)
Q Consensus 237 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 280 (488)
++.+|..+.+.|++..|.++...|...+...++.++...+.+|.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~ 184 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCY 184 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHH
Confidence 55555555555555555555554444443444444444444333
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00018 Score=51.02 Aligned_cols=80 Identities=18% Similarity=0.368 Sum_probs=65.1
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHhCCCCCCHhHH
Q 011323 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGI-EPNVHTYGALIDGCAKAG--------QVAKAFGAYGIMRSKNVKPDRVVF 200 (488)
Q Consensus 130 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~ 200 (488)
....|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. +.-..+.+|+.|...+++|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34456666677999999999999999998 899999999999887643 244678889999999999999999
Q ss_pred HHHHHHHHc
Q 011323 201 NALITACGQ 209 (488)
Q Consensus 201 ~~ll~~~~~ 209 (488)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 999887654
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00058 Score=51.30 Aligned_cols=21 Identities=24% Similarity=0.195 Sum_probs=8.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHH
Q 011323 168 LIDGCAKAGQVAKAFGAYGIM 188 (488)
Q Consensus 168 l~~~~~~~~~~~~a~~~~~~~ 188 (488)
+...+.+.|+++.|...|+.+
T Consensus 45 l~~~~~~~~~~~~A~~~~~~~ 65 (119)
T TIGR02795 45 LGEAYYAQGKYADAAKAFLAV 65 (119)
T ss_pred HHHHHHhhccHHHHHHHHHHH
Confidence 333333444444444444433
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00067 Score=50.92 Aligned_cols=100 Identities=13% Similarity=-0.009 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCC--CCHHHHHHH
Q 011323 93 STFNMLMSVCASSKDSEGAFQVLRLVQEAGLK--ADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIE--PNVHTYGAL 168 (488)
Q Consensus 93 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l 168 (488)
.++..+...+.+.|++++|.+.++.+.+.... .....+..+..++.+.|++++|.+.|+.+...... .....+..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 35566677788889999999999888765311 12456677888889999999999999988865211 124567778
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCC
Q 011323 169 IDGCAKAGQVAKAFGAYGIMRSKN 192 (488)
Q Consensus 169 ~~~~~~~~~~~~a~~~~~~~~~~~ 192 (488)
..++...|+.++|.+.++++....
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHC
Confidence 888888999999999999888774
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00051 Score=62.56 Aligned_cols=102 Identities=12% Similarity=0.117 Sum_probs=53.5
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHH
Q 011323 348 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEV 427 (488)
Q Consensus 348 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 427 (488)
.+...|+++.|...|+++++.. +.+...|..+..+|...|++++|+..++++++.. +.+...|..+..+|...|++++
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~e 88 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQT 88 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHHH
Confidence 3445555566666665555543 3344555555555555666666666665555531 2234455555555556666666
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHH
Q 011323 428 GLMLLSQAKEDGVIPNLVMFKCIIGM 453 (488)
Q Consensus 428 a~~~~~~~~~~~~~~~~~~~~~li~~ 453 (488)
|...|+++.+ +.|+.......+..
T Consensus 89 A~~~~~~al~--l~P~~~~~~~~l~~ 112 (356)
T PLN03088 89 AKAALEKGAS--LAPGDSRFTKLIKE 112 (356)
T ss_pred HHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 6666655554 33444433434433
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00027 Score=50.48 Aligned_cols=92 Identities=20% Similarity=0.177 Sum_probs=48.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcC
Q 011323 344 SLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 423 (488)
Q Consensus 344 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 423 (488)
.+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++...... +.+..++..+...+...|
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHH
Confidence 34444555556666666665555432 2233444455555555566666666665555432 223345555555566666
Q ss_pred CHHHHHHHHHHHHH
Q 011323 424 DVEVGLMLLSQAKE 437 (488)
Q Consensus 424 ~~~~a~~~~~~~~~ 437 (488)
+++.|...+....+
T Consensus 83 ~~~~a~~~~~~~~~ 96 (100)
T cd00189 83 KYEEALEAYEKALE 96 (100)
T ss_pred hHHHHHHHHHHHHc
Confidence 66666666655543
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.031 Score=54.72 Aligned_cols=229 Identities=10% Similarity=0.002 Sum_probs=150.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHhcC
Q 011323 30 HSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSK 106 (488)
Q Consensus 30 ~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~ 106 (488)
.-+--++..+++..|++....+.++. |.......+-+-...+.|+.++|...++... ..|..+...+-..|-..+
T Consensus 14 rpi~d~ld~~qfkkal~~~~kllkk~--Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~ 91 (932)
T KOG2053|consen 14 RPIYDLLDSSQFKKALAKLGKLLKKH--PNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLG 91 (932)
T ss_pred hHHHHHhhhHHHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHh
Confidence 33444567899999999999999886 5544444444445667788999998887543 357778888999999999
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC----------
Q 011323 107 DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG---------- 176 (488)
Q Consensus 107 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---------- 176 (488)
+.++|..+++...+. -|+..-...+..+|.+.+++.+-.++--++.+. .+-+...+=++++.+...-
T Consensus 92 ~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i 168 (932)
T KOG2053|consen 92 KLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPI 168 (932)
T ss_pred hhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccch
Confidence 999999999999875 566777888888999988876654444444433 1223333334444443321
Q ss_pred CHHHHHHHHHHHHhCC-CCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCCHHHHHH
Q 011323 177 QVAKAFGAYGIMRSKN-VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRARE 255 (488)
Q Consensus 177 ~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 255 (488)
-..-|.+.++.+.+.+ -.-+..-...-...+...|++++|..++..-.... -...+...-+.-+..+...+++.+..+
T Consensus 169 ~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~-l~~~~~~l~~~~~dllk~l~~w~~l~~ 247 (932)
T KOG2053|consen 169 LLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEK-LTSANLYLENKKLDLLKLLNRWQELFE 247 (932)
T ss_pred hHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHh-ccccchHHHHHHHHHHHHhcChHHHHH
Confidence 1234666777776554 11122222223344556788999999984433221 112222333456677788889998888
Q ss_pred HHHHHHhcC
Q 011323 256 VYKMIHKYN 264 (488)
Q Consensus 256 ~~~~~~~~~ 264 (488)
+-..+...+
T Consensus 248 l~~~Ll~k~ 256 (932)
T KOG2053|consen 248 LSSRLLEKG 256 (932)
T ss_pred HHHHHHHhC
Confidence 888888776
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00044 Score=49.29 Aligned_cols=91 Identities=20% Similarity=0.201 Sum_probs=46.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 011323 97 MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG 176 (488)
Q Consensus 97 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 176 (488)
.+...+...|++++|...++...+.. +.+...+..+...+...+++++|.+.++...... +.+..++..+...+...|
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHH
Confidence 34444455555555555555554432 2233444555555555555555555555555442 223344555555555555
Q ss_pred CHHHHHHHHHHHH
Q 011323 177 QVAKAFGAYGIMR 189 (488)
Q Consensus 177 ~~~~a~~~~~~~~ 189 (488)
+++.|...+....
T Consensus 83 ~~~~a~~~~~~~~ 95 (100)
T cd00189 83 KYEEALEAYEKAL 95 (100)
T ss_pred hHHHHHHHHHHHH
Confidence 5555555555544
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00023 Score=60.07 Aligned_cols=99 Identities=17% Similarity=0.143 Sum_probs=64.3
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHH
Q 011323 314 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 393 (488)
Q Consensus 314 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 393 (488)
..+.+++.+|+..|.+.++.. +-|.+.|..-..+|.+.|.++.|++-.+..+..+ +....+|..|..+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHHH
Confidence 455667777777777777654 3456666666677777777777777666666544 23356677777777777777777
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHH
Q 011323 394 MEVLSDMKSLGLCPNTITYSILL 416 (488)
Q Consensus 394 ~~~~~~~~~~~~~p~~~~~~~l~ 416 (488)
++.|++.++ +.|+..+|..=+
T Consensus 169 ~~aykKaLe--ldP~Ne~~K~nL 189 (304)
T KOG0553|consen 169 IEAYKKALE--LDPDNESYKSNL 189 (304)
T ss_pred HHHHHhhhc--cCCCcHHHHHHH
Confidence 777777665 466665555443
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00029 Score=59.43 Aligned_cols=100 Identities=13% Similarity=0.130 Sum_probs=79.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCCCCC---HHHHHHHHHHHHhcCChh
Q 011323 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPT---LSTFNMLMSVCASSKDSE 109 (488)
Q Consensus 33 ~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~ 109 (488)
+.+.++++|.+|++.|.+.++.. |.+++++-.-..++.+.|.++.|++-.+....-| ..+|..|..+|...|+++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~--P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELD--PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcC--CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHH
Confidence 44557889999999999998876 8889998888889999999999999988876433 347788888899999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 011323 110 GAFQVLRLVQEAGLKADCKLYTTLITT 136 (488)
Q Consensus 110 ~a~~~~~~~~~~~~~~~~~~~~~l~~~ 136 (488)
+|++.|++.++. .|+-.+|..=+..
T Consensus 167 ~A~~aykKaLel--dP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 167 EAIEAYKKALEL--DPDNESYKSNLKI 191 (304)
T ss_pred HHHHHHHhhhcc--CCCcHHHHHHHHH
Confidence 999998888764 6666666544443
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00077 Score=61.40 Aligned_cols=88 Identities=13% Similarity=0.002 Sum_probs=47.4
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhH
Q 011323 313 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 392 (488)
Q Consensus 313 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 392 (488)
.+...|+++.|+..|.++.+.. +.+...|..+..+|...|++++|...++++.+.. +.+...|..+..+|...|++++
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~e 88 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQT 88 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHHH
Confidence 3344555555555555555543 2344455555555555555555555555555543 2344455555555555566666
Q ss_pred HHHHHHHHHh
Q 011323 393 TMEVLSDMKS 402 (488)
Q Consensus 393 a~~~~~~~~~ 402 (488)
|+..|++.++
T Consensus 89 A~~~~~~al~ 98 (356)
T PLN03088 89 AKAALEKGAS 98 (356)
T ss_pred HHHHHHHHHH
Confidence 6665555554
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00051 Score=55.52 Aligned_cols=84 Identities=13% Similarity=0.149 Sum_probs=43.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 011323 341 SYSSLMGACSNAKNWQKALELYEHMKSIKLKPT--VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 418 (488)
Q Consensus 341 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 418 (488)
.+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+++..+.. +-+...+..+...
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 115 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 444555555555666666666665554321111 2345555556666666666666666655431 2234444455555
Q ss_pred HhhcCCH
Q 011323 419 CERKDDV 425 (488)
Q Consensus 419 ~~~~g~~ 425 (488)
+...|+.
T Consensus 116 ~~~~g~~ 122 (172)
T PRK02603 116 YHKRGEK 122 (172)
T ss_pred HHHcCCh
Confidence 5555543
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.0026 Score=48.96 Aligned_cols=97 Identities=7% Similarity=-0.067 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 011323 340 ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 419 (488)
Q Consensus 340 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 419 (488)
...-.+...+...|++++|.++|+-+.... +.+..-|-.|..++-..|++++|+..+....... +-++..+..+..++
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~ 113 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHH
Confidence 334445555667788888888887776654 4455666677777777788888888887777653 34567777777777
Q ss_pred hhcCCHHHHHHHHHHHHHc
Q 011323 420 ERKDDVEVGLMLLSQAKED 438 (488)
Q Consensus 420 ~~~g~~~~a~~~~~~~~~~ 438 (488)
...|+.+.|.+.|+..+..
T Consensus 114 L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 8888888888877776654
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.0001 Score=48.91 Aligned_cols=62 Identities=21% Similarity=0.288 Sum_probs=48.4
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCC--CCCHHHHHHH
Q 011323 35 LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPTLSTFNML 98 (488)
Q Consensus 35 l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l 98 (488)
|+++|++++|+++|+++.... |.+......++.++...|++++|.++++++. .|+...|..+
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l 64 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRN--PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQL 64 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHT--TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 567899999999999998887 7788888888889999999999999998876 3443444333
|
... |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0017 Score=49.96 Aligned_cols=92 Identities=11% Similarity=0.030 Sum_probs=50.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 011323 97 MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG 176 (488)
Q Consensus 97 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 176 (488)
.+...+...|++++|..+|+.+.... +-+..-|..|..++-..|++++|++.|....... +-|...+..+..++...|
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~lG 117 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLACD 117 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcC
Confidence 33344455566666666665555443 3344455555555555566666666666555554 234555555555666666
Q ss_pred CHHHHHHHHHHHHh
Q 011323 177 QVAKAFGAYGIMRS 190 (488)
Q Consensus 177 ~~~~a~~~~~~~~~ 190 (488)
+.+.|.+.|+..+.
T Consensus 118 ~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 118 NVCYAIKALKAVVR 131 (157)
T ss_pred CHHHHHHHHHHHHH
Confidence 66666666555543
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.74 E-value=8.6e-05 Score=51.67 Aligned_cols=78 Identities=18% Similarity=0.274 Sum_probs=30.1
Q ss_pred CCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhcCCHHHHHH
Q 011323 353 KNWQKALELYEHMKSIKLK-PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP-NTITYSILLVACERKDDVEVGLM 430 (488)
Q Consensus 353 g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~ 430 (488)
|+++.|+.+++++.+.... ++...+..+..+|.+.|++++|..+++. .+ ..| +......+..+|...|++++|++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~--~~~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK--LDPSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT--HHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC--CCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 4444444444444433210 1222233344444444444444444444 11 111 12222233444444444444444
Q ss_pred HHH
Q 011323 431 LLS 433 (488)
Q Consensus 431 ~~~ 433 (488)
+++
T Consensus 80 ~l~ 82 (84)
T PF12895_consen 80 ALE 82 (84)
T ss_dssp HHH
T ss_pred HHh
Confidence 443
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00022 Score=49.57 Aligned_cols=80 Identities=15% Similarity=0.150 Sum_probs=47.9
Q ss_pred cCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCC--CCCHHHHHHHHHHHHhcCChhHHHHHH
Q 011323 38 QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPTLSTFNMLMSVCASSKDSEGAFQVL 115 (488)
Q Consensus 38 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~ 115 (488)
+|+++.|+.+++.+.+......+..+...++..+...|++++|..++++.. +.+....-.+..++.+.|++++|++++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 677888888888887765211134444446667777777777777776522 123333334456677777777777776
Q ss_pred HH
Q 011323 116 RL 117 (488)
Q Consensus 116 ~~ 117 (488)
++
T Consensus 82 ~~ 83 (84)
T PF12895_consen 82 EK 83 (84)
T ss_dssp HH
T ss_pred hc
Confidence 54
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.71 E-value=5e-05 Score=41.06 Aligned_cols=26 Identities=31% Similarity=0.661 Sum_probs=11.1
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHh
Q 011323 377 MNALITALCDGDQLPKTMEVLSDMKS 402 (488)
Q Consensus 377 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 402 (488)
|+.++.+|++.|++++|.++|++|.+
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhH
Confidence 44444444444444444444444443
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0011 Score=58.10 Aligned_cols=130 Identities=13% Similarity=0.031 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHH
Q 011323 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF-AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA 348 (488)
Q Consensus 270 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 348 (488)
.+|..++....+.+..+.|..+|.+..+.+.. +...|...... +...++.+.|..+|+...+. ...+...+...+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~-~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRC-TYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS--THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 35666666666667777777777776644221 23333333333 22245555577777776654 34556666666677
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 011323 349 CSNAKNWQKALELYEHMKSIKLKPT---VSTMNALITALCDGDQLPKTMEVLSDMKS 402 (488)
Q Consensus 349 ~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 402 (488)
+...++.+.|..+|++.... +.++ ...|...+..-.+.|+.+.+.++.+++.+
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77777777777777776644 2222 23666666666666777777777766665
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.70 E-value=5.9e-05 Score=40.74 Aligned_cols=29 Identities=38% Similarity=0.673 Sum_probs=16.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 011323 164 TYGALIDGCAKAGQVAKAFGAYGIMRSKN 192 (488)
Q Consensus 164 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 192 (488)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555544
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.014 Score=51.79 Aligned_cols=320 Identities=12% Similarity=0.042 Sum_probs=154.8
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 011323 102 CASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKA 181 (488)
Q Consensus 102 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 181 (488)
+.+..++..|+..+....+.. +.+...|..-...+...|+++++.--.+.-.+.. +-....+.-.-+++...++..+|
T Consensus 59 ~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k-d~~~k~~~r~~~c~~a~~~~i~A 136 (486)
T KOG0550|consen 59 FYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDARQSVRLK-DGFSKGQLREGQCHLALSDLIEA 136 (486)
T ss_pred HHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchhhheecC-CCccccccchhhhhhhhHHHHHH
Confidence 344455666666666666554 3345555555555666666666654444433321 00112222333333333444444
Q ss_pred HHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHH-HHHHHhcCCHHHHHHHHHHH
Q 011323 182 FGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGAL-MKACANAGQVDRAREVYKMI 260 (488)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~ 260 (488)
.+.++ +...+ ....++..++.+.... .-+|...++..+ ..++...|++++|...--.+
T Consensus 137 ~~~~~---------~~~~~-----------~~anal~~~~~~~~s~-s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~i 195 (486)
T KOG0550|consen 137 EEKLK---------SKQAY-----------KAANALPTLEKLAPSH-SREPACFKAKLLKAECLAFLGDYDEAQSEAIDI 195 (486)
T ss_pred HHHhh---------hhhhh-----------HHhhhhhhhhcccccc-cCCchhhHHHHhhhhhhhhcccchhHHHHHHHH
Confidence 44333 00101 0111222222222110 111322333322 23445566666666666555
Q ss_pred HhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHH-------------HHHHHHHHHhcCCHHHHHHHH
Q 011323 261 HKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF-------------LSALIDFAGHAGKVEAAFEIL 327 (488)
Q Consensus 261 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------------~~~l~~~~~~~g~~~~a~~~~ 327 (488)
.+.+ ..+......-..++.-.++.+.+...|.+.+..+ |+... +..-..-..+.|.+..|.+.+
T Consensus 196 lkld-~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Y 272 (486)
T KOG0550|consen 196 LKLD-ATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECY 272 (486)
T ss_pred Hhcc-cchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHH
Confidence 5544 2222222222223334556666666666655543 22211 111122345778888999988
Q ss_pred HHHHHCC---CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCC
Q 011323 328 QEAKNQG---ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG 404 (488)
Q Consensus 328 ~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 404 (488)
.+.+... ..++...|.....+..+.|+.++|+.-.++....+ ..-...|..-..++...+++++|++-++...+..
T Consensus 273 teal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD-~syikall~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 273 TEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID-SSYIKALLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 8887643 45566677777777888899999888888877532 1111222222345556788888888888876542
Q ss_pred CCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHH
Q 011323 405 LCP-NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 449 (488)
Q Consensus 405 ~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 449 (488)
..+ ...++.-...++-++.+.+ =.+++.-.......|.-..|.-
T Consensus 352 ~s~e~r~~l~~A~~aLkkSkRkd-~ykilGi~~~as~~eikkayrk 396 (486)
T KOG0550|consen 352 KDCEIRRTLREAQLALKKSKRKD-WYKILGISRNASDDEIKKAYRK 396 (486)
T ss_pred cccchHHHHHHHHHHHHHhhhhh-HHHHhhhhhhcccchhhhHHHH
Confidence 222 2344444444444333322 1222322233334455555643
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.012 Score=50.27 Aligned_cols=53 Identities=9% Similarity=0.006 Sum_probs=22.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHcCCChhHHHHHHH
Q 011323 346 MGACSNAKNWQKALELYEHMKSI--KLKPTVSTMNALITALCDGDQLPKTMEVLS 398 (488)
Q Consensus 346 ~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 398 (488)
...|.+.|.+..|..-++.+.+. +-+........++.+|...|..++|.....
T Consensus 182 a~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~ 236 (243)
T PRK10866 182 AEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAK 236 (243)
T ss_pred HHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 33444455555555544444432 111122233334444444555444444443
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0014 Score=57.44 Aligned_cols=131 Identities=15% Similarity=0.153 Sum_probs=97.2
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH-HHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 011323 235 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINC-CSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 313 (488)
Q Consensus 235 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 313 (488)
.+|..+++...+.+..+.|..+|..+.+.+ ..+..+|...... |...++.+.|..+|+...+. ...+...+...+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 367888888888888999999999888544 3344556555555 33356777799999998876 33477788888888
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCcc---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011323 314 AGHAGKVEAAFEILQEAKNQGISVG---IISYSSLMGACSNAKNWQKALELYEHMKSI 368 (488)
Q Consensus 314 ~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 368 (488)
+.+.++.+.|..+|++.... +.++ ...|...+..-.+.|+++.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 88999999999999998865 3332 358888888888999999999999888764
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.018 Score=50.79 Aligned_cols=25 Identities=24% Similarity=0.441 Sum_probs=11.8
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHh
Q 011323 273 TIAINCCSQTGDWEFACSVYDDMTK 297 (488)
Q Consensus 273 ~~l~~~~~~~~~~~~a~~~~~~~~~ 297 (488)
..+...+.+.|++++|.++|+++..
T Consensus 159 ~~~A~l~~~l~~y~~A~~~~e~~~~ 183 (282)
T PF14938_consen 159 LKAADLYARLGRYEEAIEIYEEVAK 183 (282)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3444445555555555555555443
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0041 Score=54.86 Aligned_cols=135 Identities=10% Similarity=0.124 Sum_probs=66.9
Q ss_pred HHHHHHHHHHhc-CCHHHHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCC-----CC
Q 011323 341 SYSSLMGACSNA-KNWQKALELYEHMKSI----KLKPT--VSTMNALITALCDGDQLPKTMEVLSDMKSLGLC-----PN 408 (488)
Q Consensus 341 ~~~~l~~~~~~~-g~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----p~ 408 (488)
.+..+...|... |+++.|.+.|++..+. + .+. ..++..+...+.+.|++++|.++|++....... .+
T Consensus 116 ~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~ 194 (282)
T PF14938_consen 116 CLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYS 194 (282)
T ss_dssp HHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchh
Confidence 444555566666 7777777777766431 2 111 234455666777777777777777776543221 12
Q ss_pred HH-HHHHHHHHHhhcCCHHHHHHHHHHHHHc--CCCC--cHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCCcc
Q 011323 409 TI-TYSILLVACERKDDVEVGLMLLSQAKED--GVIP--NLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQI 478 (488)
Q Consensus 409 ~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~--~~~~~~~li~~~~~~~~~a~~~~~~~~~~~~~~~~~ 478 (488)
.. .+...+-.+...||+..|.+.+++.... ++.. .......||.++-. .+...+.+++..++.+.+-|
T Consensus 195 ~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~--~D~e~f~~av~~~d~~~~ld 267 (282)
T PF14938_consen 195 AKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEE--GDVEAFTEAVAEYDSISRLD 267 (282)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHT--T-CCCHHHHCHHHTTSS---
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHh--CCHHHHHHHHHHHcccCccH
Confidence 21 2233344555677777777777776644 2222 23344445555432 23334444444455544443
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0026 Score=60.72 Aligned_cols=73 Identities=18% Similarity=0.222 Sum_probs=58.0
Q ss_pred CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHH
Q 011323 124 KADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVF 200 (488)
Q Consensus 124 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 200 (488)
+.+...|..+...+...|++++|...+++.... .|+...|..+...+...|+.++|.+.|++.... .|...+|
T Consensus 417 ~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L--~P~~pt~ 489 (517)
T PRK10153 417 NVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFNL--RPGENTL 489 (517)
T ss_pred cCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCchH
Confidence 445677877777777789999999999998887 468888888899999999999999999888765 4554454
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.073 Score=50.75 Aligned_cols=319 Identities=11% Similarity=0.055 Sum_probs=176.6
Q ss_pred hHHHHHHHHHhhhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC----CHHHHHHHHHHHHHcCCHhHHHHH
Q 011323 74 QKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKA----DCKLYTTLITTCAKSGKVDAMFEV 149 (488)
Q Consensus 74 ~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~ 149 (488)
-|.+++|.++|-.+...|. .+..+.+.|++-...++++.- |... -...|+.+...++....+++|.+.
T Consensus 747 ~g~feeaek~yld~drrDL-----Aielr~klgDwfrV~qL~r~g---~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~y 818 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRRDL-----AIELRKKLGDWFRVYQLIRNG---GSDDDDEGKEDAFRNIGETFAEMMEWEEAAKY 818 (1189)
T ss_pred hcchhHhhhhhhccchhhh-----hHHHHHhhhhHHHHHHHHHcc---CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3778999998887765544 355667778887777666431 1111 235788888888888888888888
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCC
Q 011323 150 FHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHP 229 (488)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 229 (488)
+..-... ...+.++.+..++++...+-..+. .+....-.+..++.+.|.-++|.+.+-+...
T Consensus 819 Y~~~~~~---------e~~~ecly~le~f~~LE~la~~Lp-----e~s~llp~~a~mf~svGMC~qAV~a~Lr~s~---- 880 (1189)
T KOG2041|consen 819 YSYCGDT---------ENQIECLYRLELFGELEVLARTLP-----EDSELLPVMADMFTSVGMCDQAVEAYLRRSL---- 880 (1189)
T ss_pred HHhccch---------HhHHHHHHHHHhhhhHHHHHHhcC-----cccchHHHHHHHHHhhchHHHHHHHHHhccC----
Confidence 7664321 235666666667766655554433 3445566677888888888888877655421
Q ss_pred CCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-----------CCHHHHHHHHHHHHccCChHHHHHHHHHHHhC
Q 011323 230 VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK-----------GTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298 (488)
Q Consensus 230 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 298 (488)
| ...+..|...++|.+|.++-+...-..+. .+. -...-|..+.+.|.+-.|-+++.+|.++
T Consensus 881 --p-----kaAv~tCv~LnQW~~avelaq~~~l~qv~tliak~aaqll~~~-~~~eaIe~~Rka~~~~daarll~qmae~ 952 (1189)
T KOG2041|consen 881 --P-----KAAVHTCVELNQWGEAVELAQRFQLPQVQTLIAKQAAQLLADA-NHMEAIEKDRKAGRHLDAARLLSQMAER 952 (1189)
T ss_pred --c-----HHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhc-chHHHHHHhhhcccchhHHHHHHHHhHH
Confidence 2 13455677777777777766543211110 000 0112355666777777777777777543
Q ss_pred ----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 011323 299 ----GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 374 (488)
Q Consensus 299 ----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 374 (488)
+.+| ...-...+-+..-..+..++.+-.+....+|...+... +...|-..++-++.+..-+ -...
T Consensus 953 e~~K~~p~-lr~KklYVL~AlLvE~h~~~ik~~~~~~~~g~~~dat~-------lles~~l~~~~ri~~n~Wr---gAEA 1021 (1189)
T KOG2041|consen 953 EQEKYVPY-LRLKKLYVLGALLVENHRQTIKELRKIDKHGFLEDATD-------LLESGLLAEQSRILENTWR---GAEA 1021 (1189)
T ss_pred HhhccCCH-HHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCcchhhhh-------hhhhhhhhhHHHHHHhhhh---hHHH
Confidence 3332 22111111111112233344444444445553322221 2233344444444443332 1234
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHh-CCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 011323 375 STMNALITALCDGDQLPKTMEVLSDMKS-LGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (488)
Q Consensus 375 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 437 (488)
..|..|..--...|..+.|++.--.+.+ ..+-|....|+.+.-+.+....+.-.-+.|-++..
T Consensus 1022 yHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSKAfmkLe~ 1085 (1189)
T KOG2041|consen 1022 YHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAFMKLEA 1085 (1189)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHHHHHHh
Confidence 5555566666677888888776554443 12556677777776665555555444444444433
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0099 Score=56.82 Aligned_cols=136 Identities=12% Similarity=0.008 Sum_probs=82.8
Q ss_pred CCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhc--------CCHHHHHHHHHHHH
Q 011323 300 VIPDEVFLSALIDFAGHA-----GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA--------KNWQKALELYEHMK 366 (488)
Q Consensus 300 ~~~~~~~~~~l~~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~a~~~~~~~~ 366 (488)
...+...|...+.+.... ++...|..+|++..+.. +-....+..+..++... .++..+.+..++..
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 344666666666654322 22556777777777653 22233444433333221 12233344444333
Q ss_pred hC-CCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHc
Q 011323 367 SI-KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 438 (488)
Q Consensus 367 ~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 438 (488)
.. ....+...|.++.......|++++|...+++..+. .|+...|..+...+...|+.++|...++++...
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 32 12345567777766666678888888888888874 467788888888888888888888888887764
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.03 Score=47.88 Aligned_cols=176 Identities=9% Similarity=-0.034 Sum_probs=102.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHH---HHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-
Q 011323 241 MKACANAGQVDRAREVYKMIHKYNIKGTPEVY---TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH- 316 (488)
Q Consensus 241 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 316 (488)
...+...|++++|.+.|+.+.... +.++... -.++.++.+.++++.|...+++..+..+.....-+...+.+.+.
T Consensus 39 A~~~~~~g~y~~Ai~~f~~l~~~y-P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~ 117 (243)
T PRK10866 39 AQQKLQDGNWKQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNM 117 (243)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhh
Confidence 344556777888888887777654 2233332 34566777778888888888777765433222223222222221
Q ss_pred -cC---------------C---HHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 011323 317 -AG---------------K---VEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 377 (488)
Q Consensus 317 -~g---------------~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 377 (488)
.+ + ...|+..|+.++ .-|-.+.-..+|...+..+... . ...-
T Consensus 118 ~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li---------------~~yP~S~ya~~A~~rl~~l~~~---l-a~~e 178 (243)
T PRK10866 118 ALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLV---------------RGYPNSQYTTDATKRLVFLKDR---L-AKYE 178 (243)
T ss_pred hcchhhhhhccCCCccccCHHHHHHHHHHHHHHH---------------HHCcCChhHHHHHHHHHHHHHH---H-HHHH
Confidence 10 1 123333344433 3333333445555544444321 1 1111
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHhC--CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 011323 378 NALITALCDGDQLPKTMEVLSDMKSL--GLCPNTITYSILLVACERKDDVEVGLMLLSQAK 436 (488)
Q Consensus 378 ~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 436 (488)
..+.+.|.+.|.+..|+.-++.+.+. +.+........+..+|...|..++|..+...+.
T Consensus 179 ~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 179 LSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 24567788999999999999998864 223345667788899999999999988776554
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0061 Score=49.24 Aligned_cols=85 Identities=14% Similarity=0.111 Sum_probs=42.7
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHH
Q 011323 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD--EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA 348 (488)
Q Consensus 271 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 348 (488)
.+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+.+..+.. +.+...+..+..+
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 115 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 344445555555555555555555554322221 2345555555556666666666665555542 2234444445555
Q ss_pred HHhcCCHH
Q 011323 349 CSNAKNWQ 356 (488)
Q Consensus 349 ~~~~g~~~ 356 (488)
+...|+..
T Consensus 116 ~~~~g~~~ 123 (172)
T PRK02603 116 YHKRGEKA 123 (172)
T ss_pred HHHcCChH
Confidence 55555433
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.033 Score=46.40 Aligned_cols=131 Identities=14% Similarity=0.151 Sum_probs=65.5
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHH----
Q 011323 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM---- 346 (488)
Q Consensus 271 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~---- 346 (488)
+.+.++.++.-.|.+.-....+++.++...+.++...+.+...-.+.||.+.|...|+...+..-..+....+.++
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 3444555555555555556666666555544455556666666666666666666666554432222222222222
Q ss_pred -HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 011323 347 -GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 402 (488)
Q Consensus 347 -~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 402 (488)
..|.-++++.+|...+.++...+ +.|+...|.-.-+..-.|+..+|++.++.|.+
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~ 314 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQ 314 (366)
T ss_pred hhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 22334455555555555555433 23333333333333344555566666655554
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0013 Score=53.17 Aligned_cols=88 Identities=22% Similarity=0.355 Sum_probs=56.5
Q ss_pred CCHHHHHHHHHHHHHc-----CCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----------------cCCHHHHHH
Q 011323 125 ADCKLYTTLITTCAKS-----GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAK----------------AGQVAKAFG 183 (488)
Q Consensus 125 ~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------------~~~~~~a~~ 183 (488)
.+-.+|..++..+.+. |.++-....+..|.+.|+..|..+|+.|++.+=+ -.+-+-|++
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~ 124 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAID 124 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHH
Confidence 3444555555555433 4444455555555666666666666666654432 123456888
Q ss_pred HHHHHHhCCCCCCHhHHHHHHHHHHccCC
Q 011323 184 AYGIMRSKNVKPDRVVFNALITACGQSGA 212 (488)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 212 (488)
++++|...|+.||..++..++..+++.+.
T Consensus 125 lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 125 LLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 99999999999999999999998877665
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0023 Score=51.53 Aligned_cols=26 Identities=19% Similarity=0.087 Sum_probs=11.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011323 341 SYSSLMGACSNAKNWQKALELYEHMK 366 (488)
Q Consensus 341 ~~~~l~~~~~~~g~~~~a~~~~~~~~ 366 (488)
++..+...+...|++++|...++...
T Consensus 74 ~~~~lg~~~~~~g~~~eA~~~~~~Al 99 (168)
T CHL00033 74 ILYNIGLIHTSNGEHTKALEYYFQAL 99 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444444444444444444444443
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.004 Score=50.39 Aligned_cols=88 Identities=16% Similarity=0.244 Sum_probs=58.3
Q ss_pred CccHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC----------------CChhHHH
Q 011323 336 SVGIISYSSLMGACSN-----AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG----------------DQLPKTM 394 (488)
Q Consensus 336 ~~~~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------------~~~~~a~ 394 (488)
..+..+|..+++.|.+ .|..+=....+..|.+.|+..|..+|+.|+..+=+. .+.+-|+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 3467788888888764 355666667777888888888888888888876541 2334455
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhhcC
Q 011323 395 EVLSDMKSLGLCPNTITYSILLVACERKD 423 (488)
Q Consensus 395 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 423 (488)
+++++|...|+-||..++..++..+.+.+
T Consensus 124 ~lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 124 DLLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 56666666666666666666665555544
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00047 Score=45.64 Aligned_cols=52 Identities=15% Similarity=0.206 Sum_probs=29.1
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHc
Q 011323 104 SSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA 156 (488)
Q Consensus 104 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 156 (488)
..|++++|++.|+.+.+.. +.+...+..+..+|.+.|++++|.++++.+...
T Consensus 3 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4555666666666655543 335555555666666666666666666665554
|
... |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0032 Score=50.68 Aligned_cols=81 Identities=14% Similarity=0.119 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHH
Q 011323 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP--DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM 346 (488)
Q Consensus 269 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 346 (488)
...+..+...+...|++++|...|++.......+ ...++..+...+...|++++|...++...... +.....+..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 3455666677777788888888888776543322 23467777777888888888888888777653 23344555555
Q ss_pred HHHH
Q 011323 347 GACS 350 (488)
Q Consensus 347 ~~~~ 350 (488)
..+.
T Consensus 114 ~i~~ 117 (168)
T CHL00033 114 VICH 117 (168)
T ss_pred HHHH
Confidence 5555
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.011 Score=43.73 Aligned_cols=89 Identities=16% Similarity=0.126 Sum_probs=45.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC----HHHHHHHHHHH
Q 011323 346 MGACSNAKNWQKALELYEHMKSIKLKPT--VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN----TITYSILLVAC 419 (488)
Q Consensus 346 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~----~~~~~~l~~~~ 419 (488)
..++-..|+.++|+.+|++....|.... ...+..+..++...|++++|..++++.... .|+ ......+..++
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~--~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE--FPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHHHHHHH
Confidence 3444555666666666666665554332 223444555566666666666666665542 122 12222233445
Q ss_pred hhcCCHHHHHHHHHHHH
Q 011323 420 ERKDDVEVGLMLLSQAK 436 (488)
Q Consensus 420 ~~~g~~~~a~~~~~~~~ 436 (488)
...|+.++|+..+-...
T Consensus 86 ~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHCCCHHHHHHHHHHHH
Confidence 55666666666554433
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.012 Score=43.63 Aligned_cols=93 Identities=18% Similarity=0.075 Sum_probs=43.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCC--HhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHh
Q 011323 169 IDGCAKAGQVAKAFGAYGIMRSKNVKPD--RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 246 (488)
Q Consensus 169 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 246 (488)
..++-..|+.++|+.+|++....|+..+ ...+..+...+...|++++|..++++.....+.-.-+......+..++..
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYN 87 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH
Confidence 3344455666666666666665554332 22344445555556666666666655554311100011111112223445
Q ss_pred cCCHHHHHHHHHHHH
Q 011323 247 AGQVDRAREVYKMIH 261 (488)
Q Consensus 247 ~~~~~~a~~~~~~~~ 261 (488)
.|+.++|...+-...
T Consensus 88 ~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 88 LGRPKEALEWLLEAL 102 (120)
T ss_pred CCCHHHHHHHHHHHH
Confidence 556665555554433
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.016 Score=49.50 Aligned_cols=113 Identities=16% Similarity=0.041 Sum_probs=68.1
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC---ChhHHHHHHHHHHhCCCCCCHHHH
Q 011323 336 SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD---QLPKTMEVLSDMKSLGLCPNTITY 412 (488)
Q Consensus 336 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~p~~~~~ 412 (488)
+-|...|-.|..+|...|+++.|..-|.+..+.. .+|...+..+..++.... ...++..+|++++... +-|..+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHH
Confidence 4466677777777777777777777777666554 455666666555544322 2446667777766542 3345556
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 011323 413 SILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 452 (488)
Q Consensus 413 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 452 (488)
..|...+...|++.+|...|+.|.+.. |....+..+|.
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~l--p~~~~rr~~ie 268 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLL--PADDPRRSLIE 268 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC--CCCCchHHHHH
Confidence 666666777777777777777777642 33334444554
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.016 Score=49.54 Aligned_cols=127 Identities=12% Similarity=-0.016 Sum_probs=97.4
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcC---CHHHHHHH
Q 011323 285 WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK---NWQKALEL 361 (488)
Q Consensus 285 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~ 361 (488)
.+....-++.-...++. |...|-.|..+|...|+.+.|..-|....+.. .+++..+..+..++.... +..++..+
T Consensus 138 ~~~l~a~Le~~L~~nP~-d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~l 215 (287)
T COG4235 138 MEALIARLETHLQQNPG-DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARAL 215 (287)
T ss_pred HHHHHHHHHHHHHhCCC-CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 44444445554555554 88999999999999999999999999998874 567788888877765433 46789999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 011323 362 YEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 416 (488)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 416 (488)
|+++...+ +-|......|...+...|++.+|...|+.|.+.. +|+ ..+..++
T Consensus 216 l~~al~~D-~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l-p~~-~~rr~~i 267 (287)
T COG4235 216 LRQALALD-PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL-PAD-DPRRSLI 267 (287)
T ss_pred HHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCC-CchHHHH
Confidence 99999876 5677788888889999999999999999999862 333 3444444
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.11 Score=46.51 Aligned_cols=258 Identities=12% Similarity=0.020 Sum_probs=133.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHhcCChh
Q 011323 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSE 109 (488)
Q Consensus 33 ~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~ 109 (488)
+...+..++..|+..+...++.. |+++..+..-+..+...+++++|.--.+... +.....+.-.-+.+...++..
T Consensus 57 n~~yk~k~Y~nal~~yt~Ai~~~--pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i 134 (486)
T KOG0550|consen 57 NAFYKQKTYGNALKNYTFAIDMC--PDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLI 134 (486)
T ss_pred chHHHHhhHHHHHHHHHHHHHhC--ccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHH
Confidence 44457778899999999988876 6666666655555566677777665554332 111111111111222222222
Q ss_pred HHHHH---------------HHHHHHcC-CCCCHHHHHHH-HHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHH--
Q 011323 110 GAFQV---------------LRLVQEAG-LKADCKLYTTL-ITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALID-- 170 (488)
Q Consensus 110 ~a~~~---------------~~~~~~~~-~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~-- 170 (488)
+|.+. ++...... -+|...++..+ ..++.-.|+.++|.++--..++.. ....+...++
T Consensus 135 ~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld---~~n~~al~vrg~ 211 (486)
T KOG0550|consen 135 EAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD---ATNAEALYVRGL 211 (486)
T ss_pred HHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc---cchhHHHHhccc
Confidence 22222 22221111 12333444433 345556688888887776666542 1222333333
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHH-------------HHHHHccCCHHHHHHHHHHHhhCCC-CCCCCcch
Q 011323 171 GCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL-------------ITACGQSGAVDRAFDVLAEMNAEVH-PVDPDHIT 236 (488)
Q Consensus 171 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------------l~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~ 236 (488)
++.-.++.+.+...|++.+..+ |+...--.. ..-..+.|.+..|.+.|.+.+...+ ...++...
T Consensus 212 ~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~nakl 289 (486)
T KOG0550|consen 212 CLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKL 289 (486)
T ss_pred ccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHH
Confidence 3334667788888888777553 333221111 1123456777777777777654321 12223334
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhC
Q 011323 237 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298 (488)
Q Consensus 237 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 298 (488)
|.....+..+.|+.++|+.--+...+.+ +.-...+..-..++...++|++|.+-+++..+.
T Consensus 290 Y~nra~v~~rLgrl~eaisdc~~Al~iD-~syikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 290 YGNRALVNIRLGRLREAISDCNEALKID-SSYIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHhHhhhcccCCchhhhhhhhhhhhcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4444555666777777777666666543 111223333445555566677777766665553
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00088 Score=43.80 Aligned_cols=55 Identities=16% Similarity=0.157 Sum_probs=40.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCC
Q 011323 32 YNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP 88 (488)
Q Consensus 32 ~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 88 (488)
...+.+.|++++|++.|+++++.. |.+...+..++.++...|++++|...|+.+.
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~ 58 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQD--PDNPEAWYLLGRILYQQGRYDEALAYYERAL 58 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCS--TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 355677888888888888888776 6777777777777777777777777777653
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.17 Score=48.47 Aligned_cols=367 Identities=12% Similarity=0.099 Sum_probs=214.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCCC-CCHHHHHHHHHH---------
Q 011323 32 YNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN-PTLSTFNMLMSV--------- 101 (488)
Q Consensus 32 ~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~l~~~--------- 101 (488)
...|+..=.+++|.+..+ .+ +.+.+..+++.+....-.++.|...|-+... +.+.....+-..
T Consensus 670 ~~~Lve~vgledA~qfiE----dn---PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~ae 742 (1189)
T KOG2041|consen 670 VMNLVEAVGLEDAIQFIE----DN---PHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAE 742 (1189)
T ss_pred HHHHHHHhchHHHHHHHh----cC---CchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHh
Confidence 345555566777777665 33 4455666778887777888889888866542 222221111111
Q ss_pred -HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCCHH
Q 011323 102 -CASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA-GIEPNVHTYGALIDGCAKAGQVA 179 (488)
Q Consensus 102 -~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~ 179 (488)
-+--|++++|++++-+|.++.+ .+..+.+.|++-.+.++++.--.. .-+.-...|+.+...+.....++
T Consensus 743 i~~~~g~feeaek~yld~drrDL---------Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We 813 (1189)
T KOG2041|consen 743 ISAFYGEFEEAEKLYLDADRRDL---------AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWE 813 (1189)
T ss_pred HhhhhcchhHhhhhhhccchhhh---------hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 1224889999999988776542 467778889988887776542111 00112457889999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHH
Q 011323 180 KAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKM 259 (488)
Q Consensus 180 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 259 (488)
+|.+.|..-... ...+.++.+..++++.+.+.+.+. .+....-.+..++.+.|.-++|.+.+-+
T Consensus 814 ~A~~yY~~~~~~---------e~~~ecly~le~f~~LE~la~~Lp-------e~s~llp~~a~mf~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 814 EAAKYYSYCGDT---------ENQIECLYRLELFGELEVLARTLP-------EDSELLPVMADMFTSVGMCDQAVEAYLR 877 (1189)
T ss_pred HHHHHHHhccch---------HhHHHHHHHHHhhhhHHHHHHhcC-------cccchHHHHHHHHHhhchHHHHHHHHHh
Confidence 999999865422 245677777777777666665553 3444666788888899988888876654
Q ss_pred HHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCC-----------CCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 011323 260 IHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI-----------PDEVFLSALIDFAGHAGKVEAAFEILQ 328 (488)
Q Consensus 260 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----------~~~~~~~~l~~~~~~~g~~~~a~~~~~ 328 (488)
... | ...+..|...++|.+|.++-+...-..+. .+.. ..--|..+.+.|+.-.|-+++.
T Consensus 878 ~s~----p-----kaAv~tCv~LnQW~~avelaq~~~l~qv~tliak~aaqll~~~~-~~eaIe~~Rka~~~~daarll~ 947 (1189)
T KOG2041|consen 878 RSL----P-----KAAVHTCVELNQWGEAVELAQRFQLPQVQTLIAKQAAQLLADAN-HMEAIEKDRKAGRHLDAARLLS 947 (1189)
T ss_pred ccC----c-----HHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhcc-hHHHHHHhhhcccchhHHHHHH
Confidence 321 1 23455677777888887776543211000 0111 1223667788888877877877
Q ss_pred HHHHC----CCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCC
Q 011323 329 EAKNQ----GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG 404 (488)
Q Consensus 329 ~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 404 (488)
+|.+. +.++ ...-...+-+..-..+..++.+-.+....+|...+... +...|-..++-++.+..=+
T Consensus 948 qmae~e~~K~~p~-lr~KklYVL~AlLvE~h~~~ik~~~~~~~~g~~~dat~-------lles~~l~~~~ri~~n~Wr-- 1017 (1189)
T KOG2041|consen 948 QMAEREQEKYVPY-LRLKKLYVLGALLVENHRQTIKELRKIDKHGFLEDATD-------LLESGLLAEQSRILENTWR-- 1017 (1189)
T ss_pred HHhHHHhhccCCH-HHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCcchhhhh-------hhhhhhhhhHHHHHHhhhh--
Confidence 77643 3332 22111111111122344555555565555554333221 2233334444444443211
Q ss_pred CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHc-CCCCcHHHHHHHH
Q 011323 405 LCPNTITYSILLVACERKDDVEVGLMLLSQAKED-GVIPNLVMFKCII 451 (488)
Q Consensus 405 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~li 451 (488)
-.....|..+..--...|.++.|++.--.+.+. .+-|....|+.+.
T Consensus 1018 -gAEAyHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllA 1064 (1189)
T KOG2041|consen 1018 -GAEAYHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLA 1064 (1189)
T ss_pred -hHHHHHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHH
Confidence 123445556666667788888888766555554 4666666666543
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.036 Score=46.07 Aligned_cols=21 Identities=19% Similarity=0.211 Sum_probs=8.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHH
Q 011323 241 MKACANAGQVDRAREVYKMIH 261 (488)
Q Consensus 241 ~~~~~~~~~~~~a~~~~~~~~ 261 (488)
+.++.+.|+++.|...++.+.
T Consensus 49 a~a~y~~~~y~~A~~~~~~fi 69 (203)
T PF13525_consen 49 AYAYYKQGDYEEAIAAYERFI 69 (203)
T ss_dssp HHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHH
Confidence 334444444444444444433
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.058 Score=42.49 Aligned_cols=133 Identities=17% Similarity=0.118 Sum_probs=92.6
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHH
Q 011323 159 EPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 238 (488)
Q Consensus 159 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 238 (488)
-|++..--.|..+....|+..+|...|++....-+..|......+.++....++...|..+++.+-+.. +-..+..+..
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~-pa~r~pd~~L 164 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYN-PAFRSPDGHL 164 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcC-CccCCCCchH
Confidence 567777777888888888888888888888766566677778888888888888888888888876542 1112233555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHH
Q 011323 239 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD 294 (488)
Q Consensus 239 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 294 (488)
.+.+.+...|.+.+|..-|+...+.- |++..-......+.+.|+.+++..-+..
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~y--pg~~ar~~Y~e~La~qgr~~ea~aq~~~ 218 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISYY--PGPQARIYYAEMLAKQGRLREANAQYVA 218 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHhC--CCHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 66777888888888888888887753 4444444444556666766655544433
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0017 Score=42.38 Aligned_cols=56 Identities=9% Similarity=0.118 Sum_probs=28.0
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHc
Q 011323 100 SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA 156 (488)
Q Consensus 100 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 156 (488)
..+.+.|++++|+..|+.+.+.. +-+...+..+..++...|++++|...|+.+.+.
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34445555555555555555443 234445555555555555555555555555443
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0091 Score=56.00 Aligned_cols=244 Identities=14% Similarity=0.190 Sum_probs=131.6
Q ss_pred HHHHHHHHHHHHcCCHhHHHHH---------HHHHHHcCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCCCC
Q 011323 128 KLYTTLITTCAKSGKVDAMFEV---------FHEMVNAGIEPNVHTYGALIDGCAKAGQ--VAKAFGAYGIMRSKNVKPD 196 (488)
Q Consensus 128 ~~~~~l~~~~~~~~~~~~a~~~---------~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~ 196 (488)
..+..=+..|...|.+++|.++ |+.+... ..+.-.++.-=.+|.+-.+ +-+...-+++++++|-.|+
T Consensus 557 vp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~--ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~ 634 (1081)
T KOG1538|consen 557 VPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME--ALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPN 634 (1081)
T ss_pred ccccccchhhhhccchhhhhcccccceecchHHHHHHH--HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCch
Confidence 3344455666777777776553 2222211 1123334444556666554 3345555677778887677
Q ss_pred HhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHH------------HHHHhc-
Q 011323 197 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY------------KMIHKY- 263 (488)
Q Consensus 197 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~------------~~~~~~- 263 (488)
... +...++-.|.+.+|-++|.+--.+ +..+..|.....++.|.+++ ++-.+.
T Consensus 635 ~iL---lA~~~Ay~gKF~EAAklFk~~G~e-----------nRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WA 700 (1081)
T KOG1538|consen 635 DLL---LADVFAYQGKFHEAAKLFKRSGHE-----------NRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWA 700 (1081)
T ss_pred HHH---HHHHHHhhhhHHHHHHHHHHcCch-----------hhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHh
Confidence 654 344566678888888888765322 12233333333334333333 221110
Q ss_pred -CCCCCHHHHHHHHHHHHccCChHHHHHHHHH---------HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011323 264 -NIKGTPEVYTIAINCCSQTGDWEFACSVYDD---------MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 333 (488)
Q Consensus 264 -~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~---------~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 333 (488)
++... .+....+...|+.++|..+..+ +-++--..+..+...+...+.+...+..|-++|..|-+.
T Consensus 701 r~~keP----kaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~ 776 (1081)
T KOG1538|consen 701 RNIKEP----KAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL 776 (1081)
T ss_pred hhcCCc----HHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH
Confidence 11111 1233444555666666554321 111111124455666666666777788888888876543
Q ss_pred CCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-----------HHHHHHHHHHcCCChhHHHHHHHHHHh
Q 011323 334 GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS-----------TMNALITALCDGDQLPKTMEVLSDMKS 402 (488)
Q Consensus 334 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-----------~~~~l~~~~~~~~~~~~a~~~~~~~~~ 402 (488)
..++......++|.+|..+-+...+. .||.. -|...-.+|.+.|+-.+|.++++++..
T Consensus 777 ---------ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 777 ---------KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred ---------HHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 35677788899999998888776543 33322 122233456667777777777776643
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.25 Score=50.45 Aligned_cols=109 Identities=16% Similarity=0.185 Sum_probs=65.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHH
Q 011323 307 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS--TMNALITAL 384 (488)
Q Consensus 307 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~ 384 (488)
|.+....+...+.+++|.-.|+..-+. .-.+.+|..+|+|++|..+..++.. ..+.. +-..|+..+
T Consensus 942 ~~~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L 1009 (1265)
T KOG1920|consen 942 YEAYADHLREELMSDEAALMYERCGKL---------EKALKAYKECGDWREALSLAAQLSE---GKDELVILAEELVSRL 1009 (1265)
T ss_pred HHHHHHHHHHhccccHHHHHHHHhccH---------HHHHHHHHHhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHH
Confidence 333444445566777776666544321 2345677888888888888777642 12222 225677778
Q ss_pred HcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHH
Q 011323 385 CDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 435 (488)
Q Consensus 385 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 435 (488)
...+++-+|-+++.+.... |. -.+..+++...+++|.++....
T Consensus 1010 ~e~~kh~eAa~il~e~~sd---~~-----~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1010 VEQRKHYEAAKILLEYLSD---PE-----EAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred HHcccchhHHHHHHHHhcC---HH-----HHHHHHhhHhHHHHHHHHHHhc
Confidence 8889988888888876642 22 2233344555566666655443
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0015 Score=43.38 Aligned_cols=60 Identities=17% Similarity=0.098 Sum_probs=25.1
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcC-CHHHHHHHHHHHH
Q 011323 376 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD-DVEVGLMLLSQAK 436 (488)
Q Consensus 376 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~ 436 (488)
.|..+...+...|++++|+..|++..+.. +.+...|..+..++...| ++++|++.+++.+
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 34444444444444444444444444321 112334444444444444 3444444444443
|
... |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.11 Score=43.53 Aligned_cols=142 Identities=6% Similarity=0.003 Sum_probs=106.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH---
Q 011323 305 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI--- 381 (488)
Q Consensus 305 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~--- 381 (488)
.....++......|.+.-....+.++++...+.++.....+++.-.+.||.+.|...|++..+..-+.|..+.+.++
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 34666777777888999999999999998878889999999999999999999999999876543344444444433
Q ss_pred --HHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHH
Q 011323 382 --TALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 449 (488)
Q Consensus 382 --~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 449 (488)
..|.-.+++..|...+.++.+.. +.|+...+.-.-...-.|+...|++.++.|... .|...+-++
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es 324 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHES 324 (366)
T ss_pred hhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhh
Confidence 34566788999999998887653 345555555455555678999999999999975 344444443
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0031 Score=41.77 Aligned_cols=61 Identities=18% Similarity=0.209 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-CHhHHHHHHHHHH
Q 011323 93 STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG-KVDAMFEVFHEMV 154 (488)
Q Consensus 93 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~ 154 (488)
.+|..+...+...|++++|+..|++..+.. +.+...|..+..++...| ++++|++.++..+
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 344444445555555555555555554443 233444445555555555 3555555555444
|
... |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.12 Score=42.91 Aligned_cols=179 Identities=8% Similarity=0.024 Sum_probs=95.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 011323 241 MKACANAGQVDRAREVYKMIHKYNI--KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 318 (488)
Q Consensus 241 ~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 318 (488)
...+...|++++|...|+.+..... +-.......++.++.+.|+++.|...+++..+..+......+...+.+.+...
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~ 91 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYK 91 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHH
Confidence 3456678888888888888876532 12245566778888888999999999888776533322222222222221111
Q ss_pred CHHHHHHHHHHHHHCCC---CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHH
Q 011323 319 KVEAAFEILQEAKNQGI---SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTME 395 (488)
Q Consensus 319 ~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 395 (488)
...... ...... .--...+..++.-|-.+.-..+|...+..+... . ...--.+...|.+.|.+..|..
T Consensus 92 ~~~~~~-----~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~---l-a~~e~~ia~~Y~~~~~y~aA~~ 162 (203)
T PF13525_consen 92 QIPGIL-----RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR---L-AEHELYIARFYYKRGKYKAAII 162 (203)
T ss_dssp HHHHHH------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH---H-HHHHHHHHHHHHCTT-HHHHHH
T ss_pred hCccch-----hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH---H-HHHHHHHHHHHHHcccHHHHHH
Confidence 111110 000000 001234555555565666666666655555421 1 1112235677888888888888
Q ss_pred HHHHHHhCCCCCC---HHHHHHHHHHHhhcCCHHHHH
Q 011323 396 VLSDMKSLGLCPN---TITYSILLVACERKDDVEVGL 429 (488)
Q Consensus 396 ~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~a~ 429 (488)
-++.+++. .+-+ ......++.++.+.|..+.+.
T Consensus 163 r~~~v~~~-yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 163 RFQYVIEN-YPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHH-STTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHH-CCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 88888764 2222 334566778888888776443
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.017 Score=49.80 Aligned_cols=95 Identities=13% Similarity=0.090 Sum_probs=47.6
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHhHHHHH
Q 011323 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNV----HTYGALIDGCAKAGQVAKAFGAYGIMRSKN--VKPDRVVFNAL 203 (488)
Q Consensus 130 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l 203 (488)
|...+..+.+.|++++|...|+.+.+. .|+. ..+..+...|...|++++|...|+.+.+.- -+.....+..+
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 444443334455566666666655554 2222 344455555556666666666666655431 01112333334
Q ss_pred HHHHHccCCHHHHHHHHHHHhhC
Q 011323 204 ITACGQSGAVDRAFDVLAEMNAE 226 (488)
Q Consensus 204 l~~~~~~g~~~~a~~~~~~~~~~ 226 (488)
..++...|+.++|..+|+.+...
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 44555556666666666655543
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.26 Score=44.73 Aligned_cols=132 Identities=12% Similarity=0.089 Sum_probs=79.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 011323 341 SYSSLMGACSNAKNWQKALELYEHMKSIK-LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 419 (488)
Q Consensus 341 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 419 (488)
+|...+..-.+...++.|..+|-+..+.+ +.+++.++++++..++ .|+...|.++|+--... ++.+..-..-.+.-+
T Consensus 399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~-f~d~~~y~~kyl~fL 476 (660)
T COG5107 399 VFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK-FPDSTLYKEKYLLFL 476 (660)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh-CCCchHHHHHHHHHH
Confidence 44455555566667777888888877766 5567777777777665 46777777777765442 222333334555666
Q ss_pred hhcCCHHHHHHHHHHHHHcCCCCc--HHHHHHHHHHHhh--cHHHHHHHHHHhhhccCCC
Q 011323 420 ERKDDVEVGLMLLSQAKEDGVIPN--LVMFKCIIGMCSR--RYEKARTLNEHVLSFNSGR 475 (488)
Q Consensus 420 ~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~--~~~~a~~~~~~~~~~~~~~ 475 (488)
.+.++-..|..+|+...+. +..+ ..+|..+|+--.. .+..+..+.+++...-|..
T Consensus 477 i~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 477 IRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 6777777777777754432 1122 4456666643222 4666666666666555544
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.05 Score=42.51 Aligned_cols=72 Identities=15% Similarity=0.212 Sum_probs=48.1
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH-----cCCCCcHHHHH
Q 011323 376 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE-----DGVIPNLVMFK 448 (488)
Q Consensus 376 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~~ 448 (488)
+...++..+...|++++|.++++.+.... |.+...|..++.++...|+..+|.++|+++.+ .|+.|+..+-.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 44556666778888888888888887742 45677888888888888888888888877642 38888776543
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0093 Score=39.97 Aligned_cols=56 Identities=18% Similarity=0.231 Sum_probs=33.1
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHc
Q 011323 100 SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA 156 (488)
Q Consensus 100 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 156 (488)
..|.+.+++++|+++++.+...+ |.+...+.....++.+.|++++|.+.|+...+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 34555666666666666666553 345555555666666666666666666666554
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.023 Score=49.02 Aligned_cols=97 Identities=19% Similarity=0.107 Sum_probs=47.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHH
Q 011323 165 YGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD----RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGAL 240 (488)
Q Consensus 165 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l 240 (488)
|...+..+.+.|++++|...|+.+... .|+ ...+..+..+|...|++++|...|+.+....+.-......+..+
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 444333334456666666666666554 222 13444555556666666666666666554321111111233333
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhc
Q 011323 241 MKACANAGQVDRAREVYKMIHKY 263 (488)
Q Consensus 241 ~~~~~~~~~~~~a~~~~~~~~~~ 263 (488)
..++...|+.+.|..+|+.+.+.
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 44445555555555555555543
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0078 Score=40.34 Aligned_cols=52 Identities=13% Similarity=0.137 Sum_probs=20.6
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 011323 349 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMK 401 (488)
Q Consensus 349 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 401 (488)
|.+.+++++|.++++.+...+ +.+...|.....++.+.|++++|.+.++...
T Consensus 5 ~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l 56 (73)
T PF13371_consen 5 YLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERAL 56 (73)
T ss_pred HHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHH
Confidence 333444444444444444332 2233333333344444444444444444443
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.17 Score=40.04 Aligned_cols=127 Identities=13% Similarity=0.031 Sum_probs=63.7
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-ccHHHHHH
Q 011323 266 KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGIS-VGIISYSS 344 (488)
Q Consensus 266 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~ 344 (488)
.|+......+.+.....|+..+|...|.+...--..-|....-.+.++....+++..|...++.+.+.+.. -++.....
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 34444455555556666666666666665554333345555555555555556666666665555543210 11222333
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHH
Q 011323 345 LMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 394 (488)
Q Consensus 345 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 394 (488)
+.+.+...|....|+.-|+...+. -|+...-......+.+.|+.+++.
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~ 213 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREAN 213 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHH
Confidence 445555566666666666655543 233333333334444555444443
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.012 Score=46.05 Aligned_cols=70 Identities=23% Similarity=0.327 Sum_probs=38.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHH-----cCCCCCHHH
Q 011323 94 TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN-----AGIEPNVHT 164 (488)
Q Consensus 94 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~ 164 (488)
+...++..+...|++++|..+.+.+.... |.+...|..+|.++...|+..+|.+.|+.+.+ .|+.|+..+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 34445555666666777776666666554 44566666667777777776666666666532 366666554
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.025 Score=50.25 Aligned_cols=273 Identities=15% Similarity=0.083 Sum_probs=144.8
Q ss_pred HHHHHHHH--HHHhcCChhHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHHcCCHhHHHHHHHHH--HH--cCCC-CC
Q 011323 93 STFNMLMS--VCASSKDSEGAFQVLRLVQEAGLKADC----KLYTTLITTCAKSGKVDAMFEVFHEM--VN--AGIE-PN 161 (488)
Q Consensus 93 ~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~--~~--~~~~-~~ 161 (488)
+++..-+. -+++.|+....+.+|+...+.| ..|. .+|..|..+|.-.+++++|+++...= +. .|-+ -.
T Consensus 16 SCleLalEGERLck~gdcraGv~ff~aA~qvG-TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGE 94 (639)
T KOG1130|consen 16 SCLELALEGERLCKMGDCRAGVDFFKAALQVG-TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGE 94 (639)
T ss_pred HHHHHHHHHHHHHhccchhhhHHHHHHHHHhc-chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcc
Confidence 34444333 4677888888888888888776 3333 34666677777777888887764321 11 0100 01
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHH----HHhCCCC-CCHhHHHHHHHHHHccCC--------------------HHHH
Q 011323 162 VHTYGALIDGCAKAGQVAKAFGAYGI----MRSKNVK-PDRVVFNALITACGQSGA--------------------VDRA 216 (488)
Q Consensus 162 ~~~~~~l~~~~~~~~~~~~a~~~~~~----~~~~~~~-~~~~~~~~ll~~~~~~g~--------------------~~~a 216 (488)
......|...+--.|.+++|+-.-.+ ..+.|-. .....+..+...|...|. ++.|
T Consensus 95 AKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~A 174 (639)
T KOG1130|consen 95 AKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENA 174 (639)
T ss_pred ccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHH
Confidence 11222233333445555555433211 1111110 122334445555544332 2233
Q ss_pred HHHHHHHhhCC---CCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHH----hcCCC-CCHHHHHHHHHHHHccCChHHH
Q 011323 217 FDVLAEMNAEV---HPVDPDHITIGALMKACANAGQVDRAREVYKMIH----KYNIK-GTPEVYTIAINCCSQTGDWEFA 288 (488)
Q Consensus 217 ~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~-~~~~~~~~l~~~~~~~~~~~~a 288 (488)
.+.|.+-.+-. ...-.-...|..+.+.|.-.|+++.|+...+.-. +.|-. .....+..+.+++.-.|+++.|
T Consensus 175 v~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A 254 (639)
T KOG1130|consen 175 VKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELA 254 (639)
T ss_pred HHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhH
Confidence 33333211100 0000112245555555666678888877665332 22211 1234677788888888888888
Q ss_pred HHHHHHHHh----CCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----C-CCccHHHHHHHHHHHHhcCCHHHH
Q 011323 289 CSVYDDMTK----KGV-IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ----G-ISVGIISYSSLMGACSNAKNWQKA 358 (488)
Q Consensus 289 ~~~~~~~~~----~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~~~~a 358 (488)
.+.|+.... .|- .......-++...|.-..+++.|+.++.+-... + ..-....+-+|..+|...|..++|
T Consensus 255 ~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kA 334 (639)
T KOG1130|consen 255 IEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKA 334 (639)
T ss_pred HHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHH
Confidence 888876432 221 123345556777777777888888877653321 1 112356777888888888888888
Q ss_pred HHHHHHHH
Q 011323 359 LELYEHMK 366 (488)
Q Consensus 359 ~~~~~~~~ 366 (488)
..+.+...
T Consensus 335 l~fae~hl 342 (639)
T KOG1130|consen 335 LYFAELHL 342 (639)
T ss_pred HHHHHHHH
Confidence 87776554
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.033 Score=41.77 Aligned_cols=98 Identities=8% Similarity=0.013 Sum_probs=63.6
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 011323 338 GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 417 (488)
Q Consensus 338 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 417 (488)
|..++..++.++++.|+.+....+++..-.. .++... ..+. --......|+..+..+++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI--~~~~~~---------~~~~---------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGI--DVNGKK---------KEGD---------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCC--CCCCcc---------ccCc---------cCCCCCCCCCHHHHHHHHH
Confidence 3456667777777777777776666554321 111100 0000 0112346788888888888
Q ss_pred HHhhcCCHHHHHHHHHHHHHc-CCCCcHHHHHHHHHHHh
Q 011323 418 ACERKDDVEVGLMLLSQAKED-GVIPNLVMFKCIIGMCS 455 (488)
Q Consensus 418 ~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~ 455 (488)
+|+..|++..|+++++...+. +++.+..+|..|+.-+.
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 888888888888888887755 88888888888887543
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.028 Score=51.25 Aligned_cols=70 Identities=9% Similarity=0.014 Sum_probs=55.0
Q ss_pred cccccCCCchhHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCchH---HHHHHHHHHHhhhHHHHHHHHHhhhCCC
Q 011323 18 HANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDK---VYHARFFNVCKSQKAIKEAFRFFKLVPN 89 (488)
Q Consensus 18 ~~~~~~~~~~~~~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 89 (488)
....|++.......-..|.+.|++++|+..|++.++.+ |.+. ..+..++..+...|+.++|+..++++..
T Consensus 68 ~~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 68 SEADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred ccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44566777777777788889999999999999998887 5555 3477778888888888888888887654
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.39 Score=42.79 Aligned_cols=286 Identities=15% Similarity=0.077 Sum_probs=151.3
Q ss_pred cCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHH--HhcCCHHHHHHHHHHHHhCCCCCCHhH--HHHHHHHHHccCCHHH
Q 011323 140 SGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGC--AKAGQVAKAFGAYGIMRSKNVKPDRVV--FNALITACGQSGAVDR 215 (488)
Q Consensus 140 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~g~~~~ 215 (488)
.|+-..|.++-.+..+. +..|....-.++.+. .-.|+++.|.+-|+.|... |.... ...|.-.--+.|+.+.
T Consensus 97 AGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~Garea 172 (531)
T COG3898 97 AGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREA 172 (531)
T ss_pred cCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHH
Confidence 35656666555443321 123434344444433 2367777777777777642 22211 2222223345677777
Q ss_pred HHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCCCHH--HHHHHHHHH---HccCChHHHH
Q 011323 216 AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYN-IKGTPE--VYTIAINCC---SQTGDWEFAC 289 (488)
Q Consensus 216 a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~--~~~~l~~~~---~~~~~~~~a~ 289 (488)
|...-++.-... +.-...+...+...+..|+++.|+++++.-.... +.++.. .-..|+.+- .-..+...|.
T Consensus 173 Ar~yAe~Aa~~A---p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar 249 (531)
T COG3898 173 ARHYAERAAEKA---PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASAR 249 (531)
T ss_pred HHHHHHHHHhhc---cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHH
Confidence 777666655431 1112456667777777788888887777554432 122211 111111111 1112344444
Q ss_pred HHHHHHHhCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHH---
Q 011323 290 SVYDDMTKKGVIPDEVF-LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM--- 365 (488)
Q Consensus 290 ~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~--- 365 (488)
..-.+..+ +.||..- -..-..++.+.|+..++-.+++.+-+....| ..... ..+.+.|+. +..-+++.
T Consensus 250 ~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP--~ia~l--Y~~ar~gdt--a~dRlkRa~~L 321 (531)
T COG3898 250 DDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHP--DIALL--YVRARSGDT--ALDRLKRAKKL 321 (531)
T ss_pred HHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCCh--HHHHH--HHHhcCCCc--HHHHHHHHHHH
Confidence 44444333 2333321 2223456777888888888888887764333 33222 233455553 22222222
Q ss_pred HhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhh-cCCHHHHHHHHHHHHHcCCCCc
Q 011323 366 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER-KDDVEVGLMLLSQAKEDGVIPN 443 (488)
Q Consensus 366 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~ 443 (488)
.+.. +.+..+-..+..+-...|++..|..--+...+ ..|....|..+.+.-.. .|+-.++...+.+..+..-.|+
T Consensus 322 ~slk-~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdPa 397 (531)
T COG3898 322 ESLK-PNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDPA 397 (531)
T ss_pred HhcC-ccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCCc
Confidence 2222 34456666677777778888777766666654 46777777777666544 4888888888877776544443
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.35 Score=46.01 Aligned_cols=42 Identities=26% Similarity=0.317 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCC
Q 011323 43 ECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP 88 (488)
Q Consensus 43 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 88 (488)
+.+.-++++.++|..|. ..+ ++..+.-.|.+.+|.++|.+.-
T Consensus 618 ~li~EL~~~k~rge~P~-~iL---lA~~~Ay~gKF~EAAklFk~~G 659 (1081)
T KOG1538|consen 618 ELISELEERKKRGETPN-DLL---LADVFAYQGKFHEAAKLFKRSG 659 (1081)
T ss_pred HHHHHHHHHHhcCCCch-HHH---HHHHHHhhhhHHHHHHHHHHcC
Confidence 33333444555553332 222 3344555666777777776643
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.031 Score=49.71 Aligned_cols=265 Identities=18% Similarity=0.065 Sum_probs=156.7
Q ss_pred HHHHHcCCHhHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHH--HhC--CC-CCCHhHHHHHHH
Q 011323 135 TTCAKSGKVDAMFEVFHEMVNAGIEPNV----HTYGALIDGCAKAGQVAKAFGAYGIM--RSK--NV-KPDRVVFNALIT 205 (488)
Q Consensus 135 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~--~~-~~~~~~~~~ll~ 205 (488)
.-+++.|+......+|+..++.|.+ |. .+|..|..+|.-.+++++|++....= ... |- .-...+-..|..
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 4578999999999999999998843 43 35777788888889999998764321 110 10 001112222333
Q ss_pred HHHccCCHHHHHHHHHHHhh----CCCCCCCCcchHHHHHHHHHhcCC--------------------HHHHHHHHHHHH
Q 011323 206 ACGQSGAVDRAFDVLAEMNA----EVHPVDPDHITIGALMKACANAGQ--------------------VDRAREVYKMIH 261 (488)
Q Consensus 206 ~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~--------------------~~~a~~~~~~~~ 261 (488)
.+--.|.+++|.....+-.. -+..+ .....+-.+..+|...|. ++.|.++|..-.
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv-~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL 182 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRV-LESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENL 182 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHH-hhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHH
Confidence 33444556655543222110 00000 111233334445544332 233334433211
Q ss_pred ----hcCC-CCCHHHHHHHHHHHHccCChHHHHHHHHHHH----hCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011323 262 ----KYNI-KGTPEVYTIAINCCSQTGDWEFACSVYDDMT----KKGVI-PDEVFLSALIDFAGHAGKVEAAFEILQEAK 331 (488)
Q Consensus 262 ----~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 331 (488)
+.|- ..-...|..+.+.|.-.|+++.|+...+.-. +-|-. .....+..+..++.-.|+++.|.+.|+...
T Consensus 183 ~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl 262 (639)
T KOG1130|consen 183 ELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTL 262 (639)
T ss_pred HHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHH
Confidence 1110 0112356777778888899999987765422 22221 123567778888889999999999888643
Q ss_pred H----CC-CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 011323 332 N----QG-ISVGIISYSSLMGACSNAKNWQKALELYEHMKSI-----KLKPTVSTMNALITALCDGDQLPKTMEVLSDMK 401 (488)
Q Consensus 332 ~----~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 401 (488)
. .| -.......-+|...|.-..++++|+.++.+-... ...-....+..|..+|...|..++|+.+.+.-+
T Consensus 263 ~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 263 NLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 2 22 1234556677888888888999999888765321 112345678889999999999999988877654
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.47 Score=42.38 Aligned_cols=107 Identities=12% Similarity=0.107 Sum_probs=58.0
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHh
Q 011323 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 351 (488)
Q Consensus 272 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 351 (488)
.+..+.-+...|+...|.++-.+. . .|+...|...+.+++..++|++...+... +-++.-|..++.+|.+
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~F---k-v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~ 249 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEF---K-VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLK 249 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHc---C-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHH
Confidence 333444555556665555554443 1 24666666666666666666665554321 1123556666666666
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHH
Q 011323 352 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLS 398 (488)
Q Consensus 352 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 398 (488)
.|...+|..+..++ + +..-+..|.++|++.+|.+...
T Consensus 250 ~~~~~eA~~yI~k~-----~-----~~~rv~~y~~~~~~~~A~~~A~ 286 (319)
T PF04840_consen 250 YGNKKEASKYIPKI-----P-----DEERVEMYLKCGDYKEAAQEAF 286 (319)
T ss_pred CCCHHHHHHHHHhC-----C-----hHHHHHHHHHCCCHHHHHHHHH
Confidence 66666666655541 1 1234555666666666655543
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.5 Score=42.16 Aligned_cols=280 Identities=14% Similarity=0.080 Sum_probs=169.0
Q ss_pred hhhHHHHHHHHHhhhCC---CCCHHHHHHHHH--HHHhcCChhHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHHcCCHh
Q 011323 72 KSQKAIKEAFRFFKLVP---NPTLSTFNMLMS--VCASSKDSEGAFQVLRLVQEAGLKADCK--LYTTLITTCAKSGKVD 144 (488)
Q Consensus 72 ~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~ 144 (488)
...|+-..|+++-.+.. ..|....-.++. +-.-.|+++.|.+-|+.|.. .|... -...|.-..-+.|+.+
T Consensus 95 agAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~---dPEtRllGLRgLyleAqr~Gare 171 (531)
T COG3898 95 AGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD---DPETRLLGLRGLYLEAQRLGARE 171 (531)
T ss_pred hccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc---ChHHHHHhHHHHHHHHHhcccHH
Confidence 33466666666655432 334444433443 33446888899988888874 22222 2334444445678888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHh--HHHHHHHHHHc---cCCHHHHHH
Q 011323 145 AMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN-VKPDRV--VFNALITACGQ---SGAVDRAFD 218 (488)
Q Consensus 145 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~--~~~~ll~~~~~---~g~~~~a~~ 218 (488)
.|...-++.-..- +.-...+.+.+...+..|+++.|+++++.-+... +.++.. .-..|+.+-.. ..+...|..
T Consensus 172 aAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~ 250 (531)
T COG3898 172 AARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARD 250 (531)
T ss_pred HHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHH
Confidence 8888887776542 2345678888888899999999999888766542 233322 22233332211 234555555
Q ss_pred HHHHHhhCCCCCCCCcch-HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHH---
Q 011323 219 VLAEMNAEVHPVDPDHIT-IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD--- 294 (488)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~--- 294 (488)
.-.+..+ +.||... -..-...+.+.|+..++-.+++.+-+....| .+... ..+.+.|+.. ..-++.
T Consensus 251 ~A~~a~K----L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP--~ia~l--Y~~ar~gdta--~dRlkRa~~ 320 (531)
T COG3898 251 DALEANK----LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHP--DIALL--YVRARSGDTA--LDRLKRAKK 320 (531)
T ss_pred HHHHHhh----cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCCh--HHHHH--HHHhcCCCcH--HHHHHHHHH
Confidence 5444433 3555432 2334567888899999999999887764333 33332 2344555532 333332
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhC
Q 011323 295 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS-NAKNWQKALELYEHMKSI 368 (488)
Q Consensus 295 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~~ 368 (488)
+.....+ +......+..+....|++..|..--+...+ ..|....|..+...-. ..||-.++...+.+..+.
T Consensus 321 L~slk~n-naes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 321 LESLKPN-NAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHhcCcc-chHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 2222222 556677777888888998888777766665 3577777777776654 458988998888887754
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.25 Score=42.41 Aligned_cols=145 Identities=11% Similarity=0.084 Sum_probs=96.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCCCC-CHHHHH---HHHHHHHh
Q 011323 29 LHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNP-TLSTFN---MLMSVCAS 104 (488)
Q Consensus 29 ~~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~---~l~~~~~~ 104 (488)
+.....++..|++.+|..+|....... +.+......++..+...|+.+.|..++..++.. ....+. .-+..+.+
T Consensus 138 ~~~~~~~~~~e~~~~a~~~~~~al~~~--~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~q 215 (304)
T COG3118 138 LAEAKELIEAEDFGEAAPLLKQALQAA--PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQ 215 (304)
T ss_pred HHHhhhhhhccchhhHHHHHHHHHHhC--cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHH
Confidence 334455668899999999999888876 667777778888888889999999999888732 222222 23445555
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCC
Q 011323 105 SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAG-IEPNVHTYGALIDGCAKAGQ 177 (488)
Q Consensus 105 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~ 177 (488)
.....+..++-...-.. +-|...-..+...+...|+.++|.+.+-.+.+.. -..|...-..++..+.-.|.
T Consensus 216 aa~~~~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~ 287 (304)
T COG3118 216 AAATPEIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGP 287 (304)
T ss_pred HhcCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCC
Confidence 55555555555554432 3466777777888888888888887766665431 13355556666666665553
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.42 Score=41.06 Aligned_cols=51 Identities=14% Similarity=0.124 Sum_probs=24.5
Q ss_pred HHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011323 138 AKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189 (488)
Q Consensus 138 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 189 (488)
...|++.+|..+|+...... +-+...--.+..+|...|+.+.|..++..+.
T Consensus 145 ~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP 195 (304)
T COG3118 145 IEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALP 195 (304)
T ss_pred hhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCc
Confidence 34455555555555544432 1123344444555555555555555555543
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.87 Score=44.92 Aligned_cols=117 Identities=15% Similarity=0.129 Sum_probs=75.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCC-CCCHHHHHHHHHHHHhcCChh
Q 011323 31 SYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP-NPTLSTFNMLMSVCASSKDSE 109 (488)
Q Consensus 31 ~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 109 (488)
-++.|.+...++-|+.+...-.... ..-..++...+..+.+.|++++|...|-+.. ..++. .++.-+....+..
T Consensus 340 kL~iL~kK~ly~~Ai~LAk~~~~d~--d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s---~Vi~kfLdaq~Ik 414 (933)
T KOG2114|consen 340 KLDILFKKNLYKVAINLAKSQHLDE--DTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPS---EVIKKFLDAQRIK 414 (933)
T ss_pred HHHHHHHhhhHHHHHHHHHhcCCCH--HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChH---HHHHHhcCHHHHH
Confidence 3456667777788887765432211 2234566777777888899999988885543 22221 2344455555666
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHH
Q 011323 110 GAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEM 153 (488)
Q Consensus 110 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 153 (488)
+--..++.+.+.|+ .+...-..|+.+|.+.++.+.-.+..+..
T Consensus 415 nLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~kL~efI~~~ 457 (933)
T KOG2114|consen 415 NLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVEKLTEFISKC 457 (933)
T ss_pred HHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchHHHHHHHhcC
Confidence 66677788888774 45556667888999888877766655443
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.28 Score=38.23 Aligned_cols=85 Identities=14% Similarity=0.058 Sum_probs=39.5
Q ss_pred hcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHH
Q 011323 316 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTME 395 (488)
Q Consensus 316 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 395 (488)
..|++++|..+|+-+.-.+ ..+..-+..|..++-..+++++|...|......+ ..|+..+-....+|...|+.+.|..
T Consensus 49 ~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~~A~~ 126 (165)
T PRK15331 49 NQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAAKARQ 126 (165)
T ss_pred HCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHHHHHH
Confidence 4455555555555544433 2233344444444445555555555554443332 1233333344445555555555555
Q ss_pred HHHHHHh
Q 011323 396 VLSDMKS 402 (488)
Q Consensus 396 ~~~~~~~ 402 (488)
.|....+
T Consensus 127 ~f~~a~~ 133 (165)
T PRK15331 127 CFELVNE 133 (165)
T ss_pred HHHHHHh
Confidence 5554443
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.048 Score=40.88 Aligned_cols=48 Identities=15% Similarity=0.247 Sum_probs=20.7
Q ss_pred CCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHH
Q 011323 194 KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 242 (488)
Q Consensus 194 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~ 242 (488)
.|+..+..+++.+|+..|++..|+++++.+... .+++.+..+|..|++
T Consensus 49 ~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~-Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 49 YPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRK-YPIPIPKEFWRRLLE 96 (126)
T ss_pred CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHH-cCCCCCHHHHHHHHH
Confidence 344444444444444444444444444444433 123333334444443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.17 Score=39.48 Aligned_cols=92 Identities=8% Similarity=-0.120 Sum_probs=75.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCC
Q 011323 345 LMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 424 (488)
Q Consensus 345 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 424 (488)
...-+...|++++|..+|+-+...+ ..+..-|..|..++-..+++++|+..|......+ .-|+..+......+...|+
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~ 120 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRK 120 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCC
Confidence 3444568999999999999988765 4567778888888999999999999999876543 3456667778889999999
Q ss_pred HHHHHHHHHHHHHc
Q 011323 425 VEVGLMLLSQAKED 438 (488)
Q Consensus 425 ~~~a~~~~~~~~~~ 438 (488)
.+.|+..|+...+.
T Consensus 121 ~~~A~~~f~~a~~~ 134 (165)
T PRK15331 121 AAKARQCFELVNER 134 (165)
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999998873
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.75 Score=41.12 Aligned_cols=106 Identities=11% Similarity=0.041 Sum_probs=58.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 011323 307 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386 (488)
Q Consensus 307 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 386 (488)
.+..+.-+...|+...|.++-++.. -|+...|..-+.+++..++|++..++... +.++..|...+.+|.+
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~ 249 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLK 249 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHH
Confidence 3334444555666666655544431 24566666666666666666665554321 1233566666666666
Q ss_pred CCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHH
Q 011323 387 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLL 432 (488)
Q Consensus 387 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 432 (488)
.|+..+|..+..++ ++ ..-+..|.+.|++.+|.+..
T Consensus 250 ~~~~~eA~~yI~k~-----~~-----~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 250 YGNKKEASKYIPKI-----PD-----EERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred CCCHHHHHHHHHhC-----Ch-----HHHHHHHHHCCCHHHHHHHH
Confidence 66666666666551 11 23344556666666665554
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.83 Score=41.39 Aligned_cols=72 Identities=8% Similarity=0.166 Sum_probs=33.7
Q ss_pred HHHhcCChhHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHH---cCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 011323 101 VCASSKDSEGAFQVLRLVQEAG---LKADCKLYTTLITTCAK---SGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGC 172 (488)
Q Consensus 101 ~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 172 (488)
.|-...+++..+++.+.+...- +..+...-.....++.+ .|+.++|++++..+......++..+|..+.+.|
T Consensus 150 SyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIy 227 (374)
T PF13281_consen 150 SYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIY 227 (374)
T ss_pred HhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence 3444555666666666555421 11111222223333344 556666666665544333345555555555544
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.39 Score=45.08 Aligned_cols=168 Identities=13% Similarity=0.153 Sum_probs=98.9
Q ss_pred CchhHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHh
Q 011323 25 VSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCAS 104 (488)
Q Consensus 25 ~~~~~~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~ 104 (488)
+.....-+...+-+|+++++.+..+.-.-.. .-+......++.++.+.|-.+.|+++-.. + ..-.....+
T Consensus 261 ld~~~~~fk~av~~~d~~~v~~~i~~~~ll~--~i~~~~~~~i~~fL~~~G~~e~AL~~~~D-----~---~~rFeLAl~ 330 (443)
T PF04053_consen 261 LDLSELEFKTAVLRGDFEEVLRMIAASNLLP--NIPKDQGQSIARFLEKKGYPELALQFVTD-----P---DHRFELALQ 330 (443)
T ss_dssp --HHHHHHHHHHHTT-HHH-----HHHHTGG--G--HHHHHHHHHHHHHTT-HHHHHHHSS------H---HHHHHHHHH
T ss_pred ECHHHHHHHHHHHcCChhhhhhhhhhhhhcc--cCChhHHHHHHHHHHHCCCHHHHHhhcCC-----h---HHHhHHHHh
Confidence 4456667777778888888777765111111 11233455667777777877777776542 1 223445567
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 011323 105 SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGA 184 (488)
Q Consensus 105 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 184 (488)
.|+.+.|.++.+. ..+...|..|.......|+++-|.+.|.+... |..|+-.|.-.|+.+...++
T Consensus 331 lg~L~~A~~~a~~------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl 395 (443)
T PF04053_consen 331 LGNLDIALEIAKE------LDDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKL 395 (443)
T ss_dssp CT-HHHHHHHCCC------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHH
T ss_pred cCCHHHHHHHHHh------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHH
Confidence 7788777766432 33666888888888888888888888877542 45666677777887777777
Q ss_pred HHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHH
Q 011323 185 YGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEM 223 (488)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 223 (488)
.+.....|- ++....++.-.|+.++..+++.+.
T Consensus 396 ~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 396 AKIAEERGD------INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHccC------HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 776666542 455555566667777777776654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.24 E-value=1.3 Score=43.17 Aligned_cols=77 Identities=10% Similarity=0.056 Sum_probs=35.3
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhH
Q 011323 313 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 392 (488)
Q Consensus 313 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 392 (488)
-+...|+..+|.++-++.+ -||...|-.=+.+++..+++++-+++-+..+ .+.-|...+.+|.+.|+.++
T Consensus 693 ~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~E 762 (829)
T KOG2280|consen 693 TLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDE 762 (829)
T ss_pred HHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHH
Confidence 3344455555544443332 2344444444555555555554444333221 12344445555555555555
Q ss_pred HHHHHHH
Q 011323 393 TMEVLSD 399 (488)
Q Consensus 393 a~~~~~~ 399 (488)
|.+++-+
T Consensus 763 A~KYipr 769 (829)
T KOG2280|consen 763 AKKYIPR 769 (829)
T ss_pred Hhhhhhc
Confidence 5555544
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.94 Score=41.33 Aligned_cols=129 Identities=10% Similarity=0.117 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHH
Q 011323 305 VFLSALIDFAGHAGKVEAAFEILQEAKNQG-ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM-NALIT 382 (488)
Q Consensus 305 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~ 382 (488)
..|...+....+..-++.|..+|-++.+.+ ..+++..+++++..++ .|+..-|..+|+--... .||...| ...+.
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~ 474 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLL 474 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHH
Confidence 445555555555555666666666666655 3455555666665443 44555666666543322 2333333 33444
Q ss_pred HHHcCCChhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 011323 383 ALCDGDQLPKTMEVLSDMKSLGLCPN--TITYSILLVACERKDDVEVGLMLLSQAKE 437 (488)
Q Consensus 383 ~~~~~~~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 437 (488)
.+...++-+.|..+|+...+. +..+ ...|..++.--...|+...+..+-+++.+
T Consensus 475 fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 475 FLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 455556666666666644332 2222 34566666666666666666555555554
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.012 Score=39.98 Aligned_cols=63 Identities=17% Similarity=0.171 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHhC----CC-CCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 011323 375 STMNALITALCDGDQLPKTMEVLSDMKSL----GL-CPN-TITYSILLVACERKDDVEVGLMLLSQAKE 437 (488)
Q Consensus 375 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 437 (488)
.+|+.+...|...|++++|+..+++..+. |- .|+ ..++..+...+...|++++|++++++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44555666666666666666666665421 10 111 34556666667777777777777766543
|
... |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.29 Score=45.91 Aligned_cols=159 Identities=14% Similarity=0.167 Sum_probs=88.4
Q ss_pred HHHHHhhhHHHHHHHHHhh--hCC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 011323 67 FFNVCKSQKAIKEAFRFFK--LVP-NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143 (488)
Q Consensus 67 l~~~~~~~~~~~~A~~~~~--~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 143 (488)
..+.+.-.++++++.+..+ .+. .-.....+.+++.+-+.|.++.|+++-.+ +. .-.....+.|++
T Consensus 267 ~fk~av~~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D---------~~---~rFeLAl~lg~L 334 (443)
T PF04053_consen 267 EFKTAVLRGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQFVTD---------PD---HRFELALQLGNL 334 (443)
T ss_dssp HHHHHHHTT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHCT-H
T ss_pred HHHHHHHcCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhhcCC---------hH---HHhHHHHhcCCH
Confidence 3344455567777544433 111 11244567777777777888777776432 21 134555677777
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHH
Q 011323 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEM 223 (488)
Q Consensus 144 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 223 (488)
+.|.++.++. ++...|..|.....+.|+++-|.+.|.+..+ +..|+-.|.-.|+.+...++.+..
T Consensus 335 ~~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a 399 (443)
T PF04053_consen 335 DIALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIA 399 (443)
T ss_dssp HHHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHH
Confidence 7777665442 3666788888888888888888777776542 345555666677777666666655
Q ss_pred hhCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHH
Q 011323 224 NAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMI 260 (488)
Q Consensus 224 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 260 (488)
...+ -++....++.-.|+.++..+++...
T Consensus 400 ~~~~--------~~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 400 EERG--------DINIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHTT---------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHcc--------CHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 5431 2444555555667777666665543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.18 Score=45.22 Aligned_cols=96 Identities=9% Similarity=-0.012 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 011323 375 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 454 (488)
Q Consensus 375 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 454 (488)
.++..+..+|.+.+++.+|++.....++.+ ++|......=..+|...|+++.|+..|+++++ +.|+....+.=|..|
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k--~~P~Nka~~~el~~l 334 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALK--LEPSNKAARAELIKL 334 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHH--hCCCcHHHHHHHHHH
Confidence 456777888889999999999888888764 56777777778888889999999999998887 557666655544444
Q ss_pred hh----cHHHHHHHHHHhhhccC
Q 011323 455 SR----RYEKARTLNEHVLSFNS 473 (488)
Q Consensus 455 ~~----~~~~a~~~~~~~~~~~~ 473 (488)
.. ..++..+++..|....+
T Consensus 335 ~~k~~~~~~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 335 KQKIREYEEKEKKMYANMFAKLA 357 (397)
T ss_pred HHHHHHHHHHHHHHHHHHhhccc
Confidence 32 44555667776655443
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.12 Score=46.30 Aligned_cols=138 Identities=17% Similarity=0.124 Sum_probs=87.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHhcCChhHHH
Q 011323 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAF 112 (488)
Q Consensus 33 ~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 112 (488)
|.+.+.|++..|...|+.+...= .....+ . .++.... ...-..+++.+.-.+.+.+++.+|+
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l--~~~~~~-----------~-~ee~~~~----~~~k~~~~lNlA~c~lKl~~~~~Ai 277 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFL--EYRRSF-----------D-EEEQKKA----EALKLACHLNLAACYLKLKEYKEAI 277 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHh--hccccC-----------C-HHHHHHH----HHHHHHHhhHHHHHHHhhhhHHHHH
Confidence 56678888888888888765431 000000 0 0111000 0122346666777788888888888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHH-HHHHHHHHHHh
Q 011323 113 QVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN-VHTYGALIDGCAKAGQVA-KAFGAYGIMRS 190 (488)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~ 190 (488)
+.-+..++.+ ++|+...-.-..++...|+++.|+..|+.+.+. .|+ ..+-+.++.+..+..+.. ...++|..|..
T Consensus 278 ~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 278 ESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 8888888775 677777777888888888888888888888876 444 444455555555544443 34677777764
Q ss_pred C
Q 011323 191 K 191 (488)
Q Consensus 191 ~ 191 (488)
.
T Consensus 355 k 355 (397)
T KOG0543|consen 355 K 355 (397)
T ss_pred c
Confidence 3
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.09 E-value=1.1 Score=40.96 Aligned_cols=122 Identities=18% Similarity=0.190 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHCCCCccHHHHHHHH----HHHHh---cCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHH--HHc
Q 011323 320 VEAAFEILQEAKNQGISVGIISYSSLM----GACSN---AKNWQKALELYEHMKSIKLKPTV----STMNALITA--LCD 386 (488)
Q Consensus 320 ~~~a~~~~~~~~~~~~~~~~~~~~~l~----~~~~~---~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~--~~~ 386 (488)
-+.|+.+++.+.+-. +-|...-|.+. .+|.+ ...+..-.++-+-+.+.|++|-. ..-|.|..+ +..
T Consensus 396 dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLys 474 (549)
T PF07079_consen 396 DEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYS 474 (549)
T ss_pred cHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHh
Confidence 566666666666542 22333322222 22221 22233334444444455555432 233333332 335
Q ss_pred CCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHH
Q 011323 387 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 449 (488)
Q Consensus 387 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 449 (488)
.|++.++.-.-..+.+ +.|++.+|..+.-......++++|..++.. ++|+..++++
T Consensus 475 qgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~-----LP~n~~~~ds 530 (549)
T PF07079_consen 475 QGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQK-----LPPNERMRDS 530 (549)
T ss_pred cccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHh-----CCCchhhHHH
Confidence 6677766655555554 567777777777666667777777776643 4455555544
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.07 E-value=1.6 Score=42.63 Aligned_cols=320 Identities=13% Similarity=0.085 Sum_probs=181.9
Q ss_pred HHhcCChhHHHHHHHHH--------HHcCCCCCHHHHHH-----HHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHH
Q 011323 102 CASSKDSEGAFQVLRLV--------QEAGLKADCKLYTT-----LITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGAL 168 (488)
Q Consensus 102 ~~~~~~~~~a~~~~~~~--------~~~~~~~~~~~~~~-----l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 168 (488)
+.+..++++-..+-+.+ ..-|++.+..-|.. +++-+...+.+..|.++-..+...-.. ....|...
T Consensus 399 ~l~~~~~d~~~~v~~~lrVln~~r~~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~W 477 (829)
T KOG2280|consen 399 SLRTPNPDEYMRVCRELRVLNALRDVRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEW 477 (829)
T ss_pred ccccCChHHHHHHHHHHHHHhhhcccccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHH
Confidence 34445555544444332 24567777666654 466677788889999888777532111 16777777
Q ss_pred HHHHHhcCCH--HHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCC--CCCcchHHHHHHHH
Q 011323 169 IDGCAKAGQV--AKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPV--DPDHITIGALMKAC 244 (488)
Q Consensus 169 ~~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~~~l~~~~ 244 (488)
..-+.+..+. +.+.+..++=.+... ....+|..+.+-....|+.+-|..+++.=......+ -.+...+...+.-+
T Consensus 478 a~~kI~~~d~~d~~vld~I~~kls~~~-~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~ka 556 (829)
T KOG2280|consen 478 ARRKIKQSDKMDEEVLDKIDEKLSAKL-TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKA 556 (829)
T ss_pred HHHHHhccCccchHHHHHHHHHhcccC-CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHH
Confidence 7777776432 233333333222222 345677777777778999999988876532221111 01223345556667
Q ss_pred HhcCCHHHHHHHHHHHHhcC-----------CCCCHHHHHHHHH--------HHHccCChHHHHHHHH--HHH----hCC
Q 011323 245 ANAGQVDRAREVYKMIHKYN-----------IKGTPEVYTIAIN--------CCSQTGDWEFACSVYD--DMT----KKG 299 (488)
Q Consensus 245 ~~~~~~~~a~~~~~~~~~~~-----------~~~~~~~~~~l~~--------~~~~~~~~~~a~~~~~--~~~----~~~ 299 (488)
...|+.+....++-++...- .+.....|.-++. .+.+.++-..+...|. ... ..+
T Consensus 557 ies~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~ 636 (829)
T KOG2280|consen 557 IESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEG 636 (829)
T ss_pred HhcCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcc
Confidence 77788777777766554431 1111112222221 0111111111111111 100 012
Q ss_pred CCCCHHHHHHHHHHHHhcCCH----------HHHHHHHHHHHH-CCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011323 300 VIPDEVFLSALIDFAGHAGKV----------EAAFEILQEAKN-QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 368 (488)
Q Consensus 300 ~~~~~~~~~~l~~~~~~~g~~----------~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 368 (488)
..|+ .......+.+.... ..-+.+.+.+.. .+......+.+--+.-+...|+..+|.++-.+.+
T Consensus 637 r~~~---lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-- 711 (829)
T KOG2280|consen 637 RIPA---LKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-- 711 (829)
T ss_pred cchh---HHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC--
Confidence 2222 22333344433321 112222222222 1222333455666677788999999999888776
Q ss_pred CCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 011323 369 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAK 436 (488)
Q Consensus 369 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 436 (488)
-||...|..-+.+++..+++++..++-+.+. ++.-|.....+|.+.|+.++|.+++-+..
T Consensus 712 --ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~ 771 (829)
T KOG2280|consen 712 --IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVG 771 (829)
T ss_pred --CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccC
Confidence 6899999999999999999988777766543 26678889999999999999999996544
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.077 Score=44.81 Aligned_cols=113 Identities=18% Similarity=0.244 Sum_probs=62.7
Q ss_pred HHHhhhCC--CCCHHHHHHHHHHHHhc-----CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHH
Q 011323 81 FRFFKLVP--NPTLSTFNMLMSVCASS-----KDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEM 153 (488)
Q Consensus 81 ~~~~~~~~--~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 153 (488)
.+.|+.++ +.|-.+|...+..+... +..+-....++.|.+-|+..|..+|+.|+..+=+..-
T Consensus 54 e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkf----------- 122 (406)
T KOG3941|consen 54 EKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKF----------- 122 (406)
T ss_pred hhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccc-----------
Confidence 34455554 45566666666555432 4455555566667777777777777777665432211
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCC
Q 011323 154 VNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA 212 (488)
Q Consensus 154 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 212 (488)
.| ...+....-.|-+ +-+-+++++++|...|+.||..+-..++.++.+.+.
T Consensus 123 -----iP-~nvfQ~~F~HYP~--QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 123 -----IP-QNVFQKVFLHYPQ--QQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred -----cc-HHHHHHHHhhCch--hhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 01 1111111111211 223466777777777777777777777777776665
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.028 Score=38.23 Aligned_cols=62 Identities=19% Similarity=0.274 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CCC-HHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 011323 340 ISYSSLMGACSNAKNWQKALELYEHMKSI----KL-KPT-VSTMNALITALCDGDQLPKTMEVLSDMK 401 (488)
Q Consensus 340 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~-~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 401 (488)
.+++.+...|...|++++|...|++..+. |- .|+ ..++..+..+|...|++++|++.+++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34555555566666666666655555421 10 011 3345555556666666666666665543
|
... |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.76 Score=42.45 Aligned_cols=79 Identities=10% Similarity=-0.001 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 011323 322 AAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMK 401 (488)
Q Consensus 322 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 401 (488)
+|.+.-+...+.+ +.|+.....+..+....++++.|...|++....+ +....+|......+.-.|+.++|.+.+++..
T Consensus 322 ~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~al 399 (458)
T PRK11906 322 KALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDKSL 399 (458)
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 4444444444443 3345555555555555555555555555555443 2223333333334444555555555555544
Q ss_pred h
Q 011323 402 S 402 (488)
Q Consensus 402 ~ 402 (488)
+
T Consensus 400 r 400 (458)
T PRK11906 400 Q 400 (458)
T ss_pred c
Confidence 3
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.84 Score=38.51 Aligned_cols=54 Identities=9% Similarity=0.019 Sum_probs=25.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHcCCChhHHHHHHHHH
Q 011323 346 MGACSNAKNWQKALELYEHMKSIKLKPTV---STMNALITALCDGDQLPKTMEVLSDM 400 (488)
Q Consensus 346 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~ 400 (488)
.+.|.+.|.+..|..-+++|.+. .+-+. ..+-.+..+|...|-.++|.+.-+-+
T Consensus 174 aryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl 230 (254)
T COG4105 174 ARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVL 230 (254)
T ss_pred HHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 34455555555555555555543 12222 22333444555555555555444433
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.46 Score=35.26 Aligned_cols=57 Identities=11% Similarity=0.082 Sum_probs=20.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCC
Q 011323 347 GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG 404 (488)
Q Consensus 347 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 404 (488)
..+...|+-+...+++..+...+ .+++...-.+..+|.+.|+..++-+++++..+.|
T Consensus 94 d~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 94 DILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 33334444444444444433211 3333444444444444444444444444444433
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.33 Score=44.59 Aligned_cols=65 Identities=12% Similarity=-0.056 Sum_probs=39.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011323 303 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGI---ISYSSLMGACSNAKNWQKALELYEHMKSI 368 (488)
Q Consensus 303 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 368 (488)
+...+..+..+|.+.|++++|+..|++..+.+.. +. .+|..+..+|...|+.++|...+++..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd-~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPN-PDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4455666666666666666666666666664321 12 24666666666666666666666666653
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.91 E-value=1.1 Score=42.68 Aligned_cols=163 Identities=15% Similarity=0.144 Sum_probs=92.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHH------HHHHHHHHHHc----cCChHHHHHHHHHHHhCCCCCCHH
Q 011323 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE------VYTIAINCCSQ----TGDWEFACSVYDDMTKKGVIPDEV 305 (488)
Q Consensus 236 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~ 305 (488)
.+..++....-.||-+.+++.+....+.+-.-.+. .|..++..++. ..+.+.|.+++..+.++- |+..
T Consensus 190 ~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y--P~s~ 267 (468)
T PF10300_consen 190 KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY--PNSA 267 (468)
T ss_pred HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC--CCcH
Confidence 44556666666677777777776654432111211 23333333332 345667788888777753 3444
Q ss_pred HHHHH-HHHHHhcCCHHHHHHHHHHHHHCC---CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 011323 306 FLSAL-IDFAGHAGKVEAAFEILQEAKNQG---ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI 381 (488)
Q Consensus 306 ~~~~l-~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 381 (488)
.|... ...+...|++++|++.|+...... .+.....+--+.-.+.-.++|++|...|..+.+.. ..+...|..+.
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~ 346 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLA 346 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHH
Confidence 33332 335566788888888887654321 11223344455566677788888888888887654 34445554443
Q ss_pred H-HHHcCCCh-------hHHHHHHHHHH
Q 011323 382 T-ALCDGDQL-------PKTMEVLSDMK 401 (488)
Q Consensus 382 ~-~~~~~~~~-------~~a~~~~~~~~ 401 (488)
. ++...|+. ++|.+++.+..
T Consensus 347 a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 347 AACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 3 33455666 67777777653
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.65 Score=36.37 Aligned_cols=130 Identities=11% Similarity=0.102 Sum_probs=87.8
Q ss_pred hhHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCCC--CCHHHHHHHH-----
Q 011323 27 EQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--PTLSTFNMLM----- 99 (488)
Q Consensus 27 ~~~~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~----- 99 (488)
..+...-.|.+.|+.++|+.-|.++.+.|....+.........+....|+...|...|..+-. +.+....-+.
T Consensus 60 d~flaAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa 139 (221)
T COG4649 60 DAFLAALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAA 139 (221)
T ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHH
Confidence 344444556689999999999999999886666666666677777788889999999987642 2222222221
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHc
Q 011323 100 SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA 156 (488)
Q Consensus 100 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 156 (488)
-.+...|.++......+-+...+-+.....-..|.-+..+.|++..|.+.|..+...
T Consensus 140 ~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 140 YLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 134567777777777666654443444455556666667778888888888777653
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=95.59 E-value=1.7 Score=39.40 Aligned_cols=28 Identities=21% Similarity=0.086 Sum_probs=23.4
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHc
Q 011323 411 TYSILLVACERKDDVEVGLMLLSQAKED 438 (488)
Q Consensus 411 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 438 (488)
-+..++.++.-.|++++|.+..++|.+.
T Consensus 307 d~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 307 DVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 4456778888899999999999999875
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.28 Score=46.71 Aligned_cols=48 Identities=17% Similarity=0.162 Sum_probs=31.5
Q ss_pred cCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhC
Q 011323 38 QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV 87 (488)
Q Consensus 38 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 87 (488)
....+.|.++++.+.++- |....+...-+++....|++++|++.|+.+
T Consensus 246 ~~~~~~a~~lL~~~~~~y--P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a 293 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRY--PNSALFLFFEGRLERLKGNLEEAIESFERA 293 (468)
T ss_pred CCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHhcCHHHHHHHHHHh
Confidence 445666777777776653 666666666666666677777777777654
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.34 Score=41.11 Aligned_cols=98 Identities=14% Similarity=0.129 Sum_probs=48.6
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CCCHHHHHHHHH
Q 011323 200 FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI--KGTPEVYTIAIN 277 (488)
Q Consensus 200 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~ 277 (488)
|+.-+..+ ..|++..|...|.......++-......+-.|..++...|++++|..+|..+.+... +.-+..+.-+..
T Consensus 145 Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 145 YNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 44444332 445566666666555554222222222344455555666666666666555544311 112345555555
Q ss_pred HHHccCChHHHHHHHHHHHhC
Q 011323 278 CCSQTGDWEFACSVYDDMTKK 298 (488)
Q Consensus 278 ~~~~~~~~~~a~~~~~~~~~~ 298 (488)
+..+.|+.++|..+|+++.+.
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHH
Confidence 555556666666666655554
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.23 Score=42.09 Aligned_cols=90 Identities=19% Similarity=0.245 Sum_probs=63.6
Q ss_pred CCCcchHHHHHHHHHh-----cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccC----------------ChHHHH
Q 011323 231 DPDHITIGALMKACAN-----AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTG----------------DWEFAC 289 (488)
Q Consensus 231 ~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----------------~~~~a~ 289 (488)
+.|..+|...+..+.. .++++-....++.|.+.|+.-|..+|+.|++.+-+-. +-.-++
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I 143 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAI 143 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHH
Confidence 3444455555554432 3556666666777777777777788887777665432 234578
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 011323 290 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKV 320 (488)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 320 (488)
+++++|..+|+.||..+-..+++++.+.+-.
T Consensus 144 ~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 144 KVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 8999999999999999999999999887753
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.83 Score=33.99 Aligned_cols=68 Identities=13% Similarity=0.084 Sum_probs=50.5
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCC
Q 011323 373 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVI 441 (488)
Q Consensus 373 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 441 (488)
+....+..+..+...|.-|.-.+++.++... -.+++.....+..+|.+.|+..++-+++.++-+.|++
T Consensus 85 ~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 85 LSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp --HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 4455666778888999999999999998754 3788999999999999999999999999999888864
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=95.31 E-value=1.7 Score=38.58 Aligned_cols=126 Identities=15% Similarity=0.109 Sum_probs=55.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCC-----CHHHHHHHHHHHHccCChHHHHHHHHHHHh----CCCCCCHHHHH--
Q 011323 240 LMKACANAGQVDRAREVYKMIHKYNIKG-----TPEVYTIAINCCSQTGDWEFACSVYDDMTK----KGVIPDEVFLS-- 308 (488)
Q Consensus 240 l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~-- 308 (488)
+..++...+.++++++.|+...+..... ...++..+...|.+..++++|.-+..+..+ .++..-...|.
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~ 207 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM 207 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence 4444455555555555555443321111 123455555555555565555544433221 12111111111
Q ss_pred ---HHHHHHHhcCCHHHHHHHHHHHHH----CCCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011323 309 ---ALIDFAGHAGKVEAAFEILQEAKN----QGISV-GIISYSSLMGACSNAKNWQKALELYEHM 365 (488)
Q Consensus 309 ---~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 365 (488)
.+.-++...|.+..|.+.-++..+ .|-++ .......+.+.|...|+.+.|+.-|+..
T Consensus 208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 122244455555555554444332 23111 1233445555666666666666555543
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=95.30 E-value=1.9 Score=40.10 Aligned_cols=77 Identities=12% Similarity=0.172 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HhHHHHHH
Q 011323 128 KLYTTLITTCAKSGKVDAMFEVFHEMVNAGIE-PNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD-RVVFNALI 204 (488)
Q Consensus 128 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll 204 (488)
.+-..+..++.+.|+.++|.+.+.+|.+.... .+......|+.++...+.+.++..++.+-.+...+.+ ..+|+..+
T Consensus 260 y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 260 YAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAAL 338 (539)
T ss_pred hhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence 33445666777788888888888888764211 2334667788888888888888888887654433222 23454433
|
The molecular function of this protein is uncertain. |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.29 E-value=2.8 Score=39.94 Aligned_cols=385 Identities=13% Similarity=0.098 Sum_probs=223.3
Q ss_pred chhHHHHHHHHhcC----CHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCC---CCCHHHHHHH
Q 011323 26 SEQLHSYNRLIRQG----RISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNML 98 (488)
Q Consensus 26 ~~~~~~~~~l~~~g----~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l 98 (488)
......|..++..+ ..+.+..++..++.. .|.-..+...++..-.+.|..+.+..+|++.. +-+...|...
T Consensus 42 ~~~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y 119 (577)
T KOG1258|consen 42 SLDFDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSY 119 (577)
T ss_pred hhcccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 34566788888543 345566666766654 37777777778888888899999999999875 4566677666
Q ss_pred HHHH-HhcCChhHHHHHHHHHHHc-CCC-CCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHH---
Q 011323 99 MSVC-ASSKDSEGAFQVLRLVQEA-GLK-ADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGC--- 172 (488)
Q Consensus 99 ~~~~-~~~~~~~~a~~~~~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~--- 172 (488)
...+ ...|+.+...+.|+..... |.. .....|...|..-..++++.....+++++++.. ..-|+....-|
T Consensus 120 ~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP----~~~~~~~f~~f~~~ 195 (577)
T KOG1258|consen 120 LAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIP----LHQLNRHFDRFKQL 195 (577)
T ss_pred HHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhh----hhHhHHHHHHHHHH
Confidence 6544 3467888888888877653 211 245578888888888899999999999998642 22222222222
Q ss_pred Hhc------CCHHHHHHHHHHHHhC---------------CC----CCC-H--hHHHHHHHH-------HHccCCHHHHH
Q 011323 173 AKA------GQVAKAFGAYGIMRSK---------------NV----KPD-R--VVFNALITA-------CGQSGAVDRAF 217 (488)
Q Consensus 173 ~~~------~~~~~a~~~~~~~~~~---------------~~----~~~-~--~~~~~ll~~-------~~~~g~~~~a~ 217 (488)
... ...+++.++-...... ++ .|. . ...+.+-.. +-..-...+..
T Consensus 196 l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr 275 (577)
T KOG1258|consen 196 LNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKR 275 (577)
T ss_pred HhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHH
Confidence 222 2234443333222210 00 111 0 001111111 11111222222
Q ss_pred HHHHHHhhCC-CCCCC----CcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHH
Q 011323 218 DVLAEMNAEV-HPVDP----DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVY 292 (488)
Q Consensus 218 ~~~~~~~~~~-~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 292 (488)
..++.-.... ..++| +..+|..-+..-...|+.+.+.-+|+...-. +..-...|--.+.-....|+.+-|..++
T Consensus 276 ~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~ 354 (577)
T KOG1258|consen 276 WGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVL 354 (577)
T ss_pred HhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHH
Confidence 3333332210 01122 3456777777778899999999988877542 1222334444455555558888888877
Q ss_pred HHHHhCCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHCCCCccH-HHHHHHHHHHHhcCCHHHHH---HHHHHHHh
Q 011323 293 DDMTKKGVIPDEVFLSALID-FAGHAGKVEAAFEILQEAKNQGISVGI-ISYSSLMGACSNAKNWQKAL---ELYEHMKS 367 (488)
Q Consensus 293 ~~~~~~~~~~~~~~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~---~~~~~~~~ 367 (488)
....+-..+ +......+-. ..-..|++..|..+++.+...- |+. ..-..-+....+.|..+.+. .++.....
T Consensus 355 ~~~~~i~~k-~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~ 431 (577)
T KOG1258|consen 355 ARACKIHVK-KTPIIHLLEARFEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYE 431 (577)
T ss_pred HhhhhhcCC-CCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcc
Confidence 766554332 2222222222 2345689999999999998764 432 22233344556778888777 33333332
Q ss_pred CCCCCCHHHHHHHHHH-----HHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcC
Q 011323 368 IKLKPTVSTMNALITA-----LCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 423 (488)
Q Consensus 368 ~~~~~~~~~~~~l~~~-----~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 423 (488)
. .-+..+...+.-- +.-.++.+.|..++.++.+. ++++...|..++..+...+
T Consensus 432 ~--~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 432 G--KENNGILEKLYVKFARLRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred c--ccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 2 2222333333222 23367899999999999886 6778888888888777655
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.83 Score=35.56 Aligned_cols=51 Identities=12% Similarity=0.035 Sum_probs=34.1
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCC
Q 011323 36 IRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP 88 (488)
Q Consensus 36 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 88 (488)
++.++.+++..+++.+.-.. |....+...-..++...|++.+|+++|+.+.
T Consensus 21 l~~~~~~D~e~lL~ALrvLR--P~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~ 71 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLR--PEFPELDLFDGWLHIVRGDWDDALRLLRELE 71 (160)
T ss_pred HccCChHHHHHHHHHHHHhC--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 36677777777777776655 5566666666666666677777777776654
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=95.20 E-value=2.7 Score=39.23 Aligned_cols=59 Identities=12% Similarity=0.169 Sum_probs=28.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 011323 343 SSLMGACSNAKNWQKALELYEHMKSIKLK-PTVSTMNALITALCDGDQLPKTMEVLSDMK 401 (488)
Q Consensus 343 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 401 (488)
..+..++.+.|+.++|.+.++++.+.... .+......|+.++...+.+.++..++.+-.
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 33444445555555555555555432111 122344445555555555555555555543
|
The molecular function of this protein is uncertain. |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.72 Score=34.18 Aligned_cols=91 Identities=9% Similarity=0.048 Sum_probs=55.1
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHH---HHHHHHHHHhcCC
Q 011323 101 VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHT---YGALIDGCAKAGQ 177 (488)
Q Consensus 101 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~ 177 (488)
+++..|+.+.|++.|.+....- +.....||.-..++.-.|+.++|++-+++..+..-..+... |..-...|-..|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 4566677777777777666542 44666777777777777777777777776665422222222 2222334556667
Q ss_pred HHHHHHHHHHHHhCC
Q 011323 178 VAKAFGAYGIMRSKN 192 (488)
Q Consensus 178 ~~~a~~~~~~~~~~~ 192 (488)
.+.|..-|+..-+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 777776666665555
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.11 E-value=1.5 Score=35.86 Aligned_cols=182 Identities=16% Similarity=0.091 Sum_probs=109.6
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 011323 245 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAF 324 (488)
Q Consensus 245 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 324 (488)
-..|-+.-|.--|....... +.-+.+||.+.-.+...|+++.|.+.|+...+.++.-+-...+.-|. +--.|++..|.
T Consensus 76 DSlGL~~LAR~DftQaLai~-P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~-~YY~gR~~LAq 153 (297)
T COG4785 76 DSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA-LYYGGRYKLAQ 153 (297)
T ss_pred hhhhHHHHHhhhhhhhhhcC-CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee-eeecCchHhhH
Confidence 34455555555565555543 44578899999999999999999999999988765534333333333 33468899998
Q ss_pred HHHHHHHHCCCCccH--HHHHHHHHHHHhcCCHHHHHHHHH-HHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 011323 325 EILQEAKNQGISVGI--ISYSSLMGACSNAKNWQKALELYE-HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMK 401 (488)
Q Consensus 325 ~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 401 (488)
+-+...-+.... |+ ..|--+. ...-++.+|..-+. +.. ..|..-|...+..|.-.+-.+ ..+++++.
T Consensus 154 ~d~~~fYQ~D~~-DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~----~~d~e~WG~~iV~~yLgkiS~--e~l~~~~~ 223 (297)
T COG4785 154 DDLLAFYQDDPN-DPFRSLWLYLN---EQKLDPKQAKTNLKQRAE----KSDKEQWGWNIVEFYLGKISE--ETLMERLK 223 (297)
T ss_pred HHHHHHHhcCCC-ChHHHHHHHHH---HhhCCHHHHHHHHHHHHH----hccHhhhhHHHHHHHHhhccH--HHHHHHHH
Confidence 888777766522 22 2222222 23345666665443 333 345555555444443222111 12333333
Q ss_pred hCCCCCC-------HHHHHHHHHHHhhcCCHHHHHHHHHHHHHcC
Q 011323 402 SLGLCPN-------TITYSILLVACERKDDVEVGLMLLSQAKEDG 439 (488)
Q Consensus 402 ~~~~~p~-------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 439 (488)
.. -..+ ..||..+.+-+...|+.++|..+|+-.....
T Consensus 224 a~-a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 224 AD-ATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred hh-ccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 21 1111 4578889999999999999999998877643
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.05 E-value=1 Score=39.35 Aligned_cols=154 Identities=8% Similarity=-0.058 Sum_probs=108.1
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHH----HHHHHHHhcCCH
Q 011323 245 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS----ALIDFAGHAGKV 320 (488)
Q Consensus 245 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~~ 320 (488)
--.|+..+|-..++++.+.- |.|...+...=.+|.-.|+...-...++++... ..||...|. ...-++...|-+
T Consensus 114 ~~~g~~h~a~~~wdklL~d~-PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDY-PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hccccccHHHHHHHHHHHhC-chhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 34677777778888887753 677778888888888999988888888887764 223332222 233345578999
Q ss_pred HHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHcCCChhHHHHHH
Q 011323 321 EAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI---KLKPTVSTMNALITALCDGDQLPKTMEVL 397 (488)
Q Consensus 321 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 397 (488)
++|++.-++..+.+ +.|...-.+....+...|++.++.++..+-... +--.-...|-...-.+...+.++.|+++|
T Consensus 192 ~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 192 DDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 99999888888775 556677777888888899999998887765421 11112234555556677778999999999
Q ss_pred HHHH
Q 011323 398 SDMK 401 (488)
Q Consensus 398 ~~~~ 401 (488)
+.-.
T Consensus 271 D~ei 274 (491)
T KOG2610|consen 271 DREI 274 (491)
T ss_pred HHHH
Confidence 7643
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.55 Score=39.94 Aligned_cols=97 Identities=18% Similarity=0.175 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CC-CHhHHHHHH
Q 011323 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGI--EPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV-KP-DRVVFNALI 204 (488)
Q Consensus 129 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~-~~~~~~~ll 204 (488)
.|+.-+..+ +.|++..|...|...++... .-....+-.|..++...|+++.|..+|..+.+.-- .| -+..+-.|.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 455444433 55556666666666665421 11223344556666666666666666666654310 11 134455555
Q ss_pred HHHHccCCHHHHHHHHHHHhhC
Q 011323 205 TACGQSGAVDRAFDVLAEMNAE 226 (488)
Q Consensus 205 ~~~~~~g~~~~a~~~~~~~~~~ 226 (488)
.+..+.|+.++|..+|+++.++
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 5666666666666666666654
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=94.81 E-value=2.6 Score=37.09 Aligned_cols=62 Identities=10% Similarity=0.066 Sum_probs=28.1
Q ss_pred HHHHHHHHHHccCCHH---HHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 011323 199 VFNALITACGQSGAVD---RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY 263 (488)
Q Consensus 199 ~~~~ll~~~~~~g~~~---~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 263 (488)
++..++.+|...+..+ +|..+++.+.... +-+ ...+..-++.+.+.++.+.+.+.+..|...
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~--~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEY-GNK--PEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCC--cHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 3444555555554433 3444444443321 111 223334444455555556666666555543
|
It is also involved in sporulation []. |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=94.80 E-value=3.3 Score=38.12 Aligned_cols=421 Identities=13% Similarity=0.102 Sum_probs=224.7
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCch------HHHHHHHHHHHhhhHHHHHHHHHh---hhCCCCCHHHHHHHHH--HHHh
Q 011323 36 IRQGRISECIDLLEDMERKGLLDMD------KVYHARFFNVCKSQKAIKEAFRFF---KLVPNPTLSTFNMLMS--VCAS 104 (488)
Q Consensus 36 ~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~---~~~~~~~~~~~~~l~~--~~~~ 104 (488)
-+++++.+|..+|-++.+.. ..+ ..+...++.++-. ++++.-.... ++-.. ...|-.+.. .+.+
T Consensus 17 qkq~~~~esEkifskI~~e~--~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~~--~s~~l~LF~~L~~Y~ 91 (549)
T PF07079_consen 17 QKQKKFQESEKIFSKIYDEK--ESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQFG--KSAYLPLFKALVAYK 91 (549)
T ss_pred HHHhhhhHHHHHHHHHHHHh--hcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhcC--CchHHHHHHHHHHHH
Confidence 38999999999999988764 222 1222233333332 2233333322 22222 234444444 3457
Q ss_pred cCChhHHHHHHHHHHHc--CCCC------------CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHc----CCCCCHHHHH
Q 011323 105 SKDSEGAFQVLRLVQEA--GLKA------------DCKLYTTLITTCAKSGKVDAMFEVFHEMVNA----GIEPNVHTYG 166 (488)
Q Consensus 105 ~~~~~~a~~~~~~~~~~--~~~~------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~ 166 (488)
.+.+++|++.+....++ +..+ |-..=+..+.++...|++.++..+++++... ...-+..+|+
T Consensus 92 ~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd 171 (549)
T PF07079_consen 92 QKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYD 171 (549)
T ss_pred hhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHH
Confidence 88999999998777654 2222 1122245677888999999999999888754 3447888999
Q ss_pred HHHHHHHhcC--------C-------HHHHHHHHHHHHhC------CCCCCHhHHHHHHHHHHcc--CCHHHHHHHHHHH
Q 011323 167 ALIDGCAKAG--------Q-------VAKAFGAYGIMRSK------NVKPDRVVFNALITACGQS--GAVDRAFDVLAEM 223 (488)
Q Consensus 167 ~l~~~~~~~~--------~-------~~~a~~~~~~~~~~------~~~~~~~~~~~ll~~~~~~--g~~~~a~~~~~~~ 223 (488)
.++-.+.+.= . ++.+.-...+|... .+.|....+..++....-. ....--+++++.-
T Consensus 172 ~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~W 251 (549)
T PF07079_consen 172 RAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENW 251 (549)
T ss_pred HHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHH
Confidence 8666655421 1 12222222333221 2234333333333332211 1122222333333
Q ss_pred hhCCCCCCCCcc-hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC----CHHHHHHHHHHHHccCChHHHHHHHHHHHhC
Q 011323 224 NAEVHPVDPDHI-TIGALMKACANAGQVDRAREVYKMIHKYNIKG----TPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298 (488)
Q Consensus 224 ~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 298 (488)
.. .-+.|+.. ....+...+.. +.+++..+-+.+....+.+ -..+|..++....+.++...|.+.+.-+...
T Consensus 252 e~--~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l 327 (549)
T PF07079_consen 252 EN--FYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKIL 327 (549)
T ss_pred Hh--hccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Confidence 22 12344422 22333333333 5556555555444332111 1357888888899999999998888877654
Q ss_pred CCCCCHH-----HHHHHHHHHH-hc---CCHHHHHHHHHHHHHCCCCc--cHHHHHHHHHHHHhcCC-HHHHHHHHHHHH
Q 011323 299 GVIPDEV-----FLSALIDFAG-HA---GKVEAAFEILQEAKNQGISV--GIISYSSLMGACSNAKN-WQKALELYEHMK 366 (488)
Q Consensus 299 ~~~~~~~-----~~~~l~~~~~-~~---g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~ 366 (488)
.+..... +-..+.+..+ .. -+...-+.+|......++.- =+.....-..-+.+.|. -++|..+++.+.
T Consensus 328 dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il 407 (549)
T PF07079_consen 328 DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLIL 407 (549)
T ss_pred CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 3221110 0011112222 11 12223344444444433211 01222223344566666 788999999888
Q ss_pred hCCCCCCHHHHHHHH----HHHHc---CCChhHHHHHHHHHHhCCCCCC----HHHHHHHHHH--HhhcCCHHHHHHHHH
Q 011323 367 SIKLKPTVSTMNALI----TALCD---GDQLPKTMEVLSDMKSLGLCPN----TITYSILLVA--CERKDDVEVGLMLLS 433 (488)
Q Consensus 367 ~~~~~~~~~~~~~l~----~~~~~---~~~~~~a~~~~~~~~~~~~~p~----~~~~~~l~~~--~~~~g~~~~a~~~~~ 433 (488)
+.. +-|..+-|.+. ..|.. ...+.+-+.+-+-+.+.|++|- ...-+.|.+| +...|++.++.-+-.
T Consensus 408 ~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~ 486 (549)
T PF07079_consen 408 QFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSS 486 (549)
T ss_pred Hhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 643 33444433322 22322 2334444455455567787774 3344445443 456899999988888
Q ss_pred HHHHcCCCCcHHHHHHHHHHHhh--cHHHHHHHHHHh
Q 011323 434 QAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHV 468 (488)
Q Consensus 434 ~~~~~~~~~~~~~~~~li~~~~~--~~~~a~~~~~~~ 468 (488)
.+.+ +.|...+|..+.-.+.. ++++|+.+...+
T Consensus 487 WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 487 WLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 8877 77888888866544443 899999988764
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=94.79 E-value=3.4 Score=38.35 Aligned_cols=145 Identities=12% Similarity=0.178 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHc---------cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 011323 250 VDRAREVYKMIHKY-NIKG-TPEVYTIAINCCSQ---------TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 318 (488)
Q Consensus 250 ~~~a~~~~~~~~~~-~~~~-~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 318 (488)
.+.|..+|.+.... ...| ....|..+..++.. .....+|.+..+...+.+.. |......+..+....+
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~-Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV-DGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhhc
Confidence 56777788877721 1223 24445544444332 22345677777777777665 8888888888888888
Q ss_pred CHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHcCCChhHHHH
Q 011323 319 KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVST---MNALITALCDGDQLPKTME 395 (488)
Q Consensus 319 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~ 395 (488)
+++.|...|++....+ +....+|......+.-+|+.++|.+.+++..+.. |.... .-..+..|+. ...+.|++
T Consensus 353 ~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLs--P~~~~~~~~~~~~~~~~~-~~~~~~~~ 428 (458)
T PRK11906 353 QAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDKSLQLE--PRRRKAVVIKECVDMYVP-NPLKNNIK 428 (458)
T ss_pred chhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC--chhhHHHHHHHHHHHHcC-CchhhhHH
Confidence 8999999999998875 3345566666666778999999999999877653 43322 2222335554 45677777
Q ss_pred HHHH
Q 011323 396 VLSD 399 (488)
Q Consensus 396 ~~~~ 399 (488)
++-+
T Consensus 429 ~~~~ 432 (458)
T PRK11906 429 LYYK 432 (458)
T ss_pred HHhh
Confidence 7654
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.74 E-value=1.5 Score=33.86 Aligned_cols=83 Identities=12% Similarity=0.147 Sum_probs=36.8
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCC
Q 011323 133 LITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA 212 (488)
Q Consensus 133 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 212 (488)
++..+...+.+.....+++.+...+ ..+...++.++..|++.+ ..+....++. ..+......+++.|.+.+.
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~l 84 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAKL 84 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcCc
Confidence 4444444455555555555555444 234445555555555432 2222233221 0122223334445555555
Q ss_pred HHHHHHHHHHH
Q 011323 213 VDRAFDVLAEM 223 (488)
Q Consensus 213 ~~~a~~~~~~~ 223 (488)
++++.-++..+
T Consensus 85 ~~~~~~l~~k~ 95 (140)
T smart00299 85 YEEAVELYKKD 95 (140)
T ss_pred HHHHHHHHHhh
Confidence 55555555443
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.73 E-value=1.3 Score=38.82 Aligned_cols=155 Identities=13% Similarity=0.046 Sum_probs=111.7
Q ss_pred HccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCCCCHHHHHHHHHHHHccCC
Q 011323 208 GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY---NIKGTPEVYTIAINCCSQTGD 284 (488)
Q Consensus 208 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~ 284 (488)
...|...+|-..++++... .+.|...+...-.+|.-.|+.......++++... +.|-...+...+.-++...|.
T Consensus 114 ~~~g~~h~a~~~wdklL~d---~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD---YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred hccccccHHHHHHHHHHHh---CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhcc
Confidence 3578888888889998874 4667777777778899999999999999888754 222223444455666778899
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCccHHHHHHHHHHHHhcCCHHHHHHH
Q 011323 285 WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ---GISVGIISYSSLMGACSNAKNWQKALEL 361 (488)
Q Consensus 285 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 361 (488)
+++|++.-++..+.+.. |...-.++...+...|+..++.++..+-.+. +.-.-..-|-...-.+...+.++.|..+
T Consensus 191 y~dAEk~A~ralqiN~~-D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 191 YDDAEKQADRALQINRF-DCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred chhHHHHHHhhccCCCc-chHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 99999999988886554 7777778888888899999999887764432 1111122233334445667899999999
Q ss_pred HHHHH
Q 011323 362 YEHMK 366 (488)
Q Consensus 362 ~~~~~ 366 (488)
|+.-+
T Consensus 270 yD~ei 274 (491)
T KOG2610|consen 270 YDREI 274 (491)
T ss_pred HHHHH
Confidence 98654
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.60 E-value=1.6 Score=33.66 Aligned_cols=85 Identities=13% Similarity=0.119 Sum_probs=44.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 011323 238 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 317 (488)
Q Consensus 238 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 317 (488)
..++..+...+.+.....+++.+...+ ..++..++.++..|++.+ ..+..+.+.. . ++......++..|.+.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~---~---~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN---K---SNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh---c---cccCCHHHHHHHHHHc
Confidence 345555555666666666666666555 345566666666666542 2233333331 1 1222234455555555
Q ss_pred CCHHHHHHHHHHH
Q 011323 318 GKVEAAFEILQEA 330 (488)
Q Consensus 318 g~~~~a~~~~~~~ 330 (488)
+.++++..++..+
T Consensus 83 ~l~~~~~~l~~k~ 95 (140)
T smart00299 83 KLYEEAVELYKKD 95 (140)
T ss_pred CcHHHHHHHHHhh
Confidence 5555555555443
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.46 E-value=0.16 Score=29.81 Aligned_cols=23 Identities=17% Similarity=0.033 Sum_probs=9.3
Q ss_pred HHHHHHcCCChhHHHHHHHHHHh
Q 011323 380 LITALCDGDQLPKTMEVLSDMKS 402 (488)
Q Consensus 380 l~~~~~~~~~~~~a~~~~~~~~~ 402 (488)
+...|.+.|++++|.++++++++
T Consensus 7 la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 7 LARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 33344444444444444444333
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.40 E-value=0.71 Score=39.90 Aligned_cols=77 Identities=17% Similarity=0.258 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCHhHHHHH
Q 011323 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRS-----KNVKPDRVVFNAL 203 (488)
Q Consensus 129 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~l 203 (488)
++..++..+...|+.+.+.+.++++.... +-+...|..++.+|.+.|+...|++.|+++.+ .|+.|...+....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 45556677777778888888888877764 44677788888888888888888888877754 4677776666555
Q ss_pred HHH
Q 011323 204 ITA 206 (488)
Q Consensus 204 l~~ 206 (488)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 544
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.39 E-value=2.4 Score=34.78 Aligned_cols=187 Identities=14% Similarity=0.033 Sum_probs=91.4
Q ss_pred HHHHhhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHh
Q 011323 68 FNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD 144 (488)
Q Consensus 68 ~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 144 (488)
+.++-+.|-+.-|+--|.+.. +.-+..||.+.-.+...|+++.|.+.|+...+....-+-...|.-| ++---|++.
T Consensus 72 GvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~ 150 (297)
T COG4785 72 GVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYK 150 (297)
T ss_pred cchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchH
Confidence 334444455555555554432 3345678888888888888888888888887764222222222222 233457788
Q ss_pred HHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHH-HHccCCHHHHHHHHHH
Q 011323 145 AMFEVFHEMVNAG-IEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA-CGQSGAVDRAFDVLAE 222 (488)
Q Consensus 145 ~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~-~~~~g~~~~a~~~~~~ 222 (488)
-|.+-|...-+.. -.|-...|--+. -..-++.+|..-+.+--+ ..|..-|...|-. |...=..+ .++++
T Consensus 151 LAq~d~~~fYQ~D~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~---~~d~e~WG~~iV~~yLgkiS~e---~l~~~ 221 (297)
T COG4785 151 LAQDDLLAFYQDDPNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAE---KSDKEQWGWNIVEFYLGKISEE---TLMER 221 (297)
T ss_pred hhHHHHHHHHhcCCCChHHHHHHHHH---HhhCCHHHHHHHHHHHHH---hccHhhhhHHHHHHHHhhccHH---HHHHH
Confidence 8877766665542 112222232222 233456666544333221 1233444333322 22111112 22333
Q ss_pred HhhCCCCC----CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 011323 223 MNAEVHPV----DPDHITIGALMKACANAGQVDRAREVYKMIHKYN 264 (488)
Q Consensus 223 ~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 264 (488)
+......- ..=..||--+.+.+...|+.++|..+|+.....+
T Consensus 222 ~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 222 LKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred HHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 33210000 0001244555566666777777777777665543
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.38 E-value=0.67 Score=40.06 Aligned_cols=78 Identities=13% Similarity=0.124 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHH-----hCCCCCCHHHHHH
Q 011323 340 ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMK-----SLGLCPNTITYSI 414 (488)
Q Consensus 340 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-----~~~~~p~~~~~~~ 414 (488)
.++..++..+...|+++.+...++++.... +-+...|..++.+|.+.|+...|+..|+.+. +.|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 445556666666777777777777766655 4566667777777777777777777766654 3466666666555
Q ss_pred HHHH
Q 011323 415 LLVA 418 (488)
Q Consensus 415 l~~~ 418 (488)
+...
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 5544
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.33 E-value=5.1 Score=38.31 Aligned_cols=367 Identities=11% Similarity=0.118 Sum_probs=208.1
Q ss_pred HHHHHHHHhhhCCC--CCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-cCCHhHHHHHHH
Q 011323 76 AIKEAFRFFKLVPN--PTLS-TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK-SGKVDAMFEVFH 151 (488)
Q Consensus 76 ~~~~A~~~~~~~~~--~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~ 151 (488)
+.+.++..+..... |... -|......-.+.|..+.+..+|++..+ +++.+...|...+..+.. .|+.+...+.|+
T Consensus 60 ~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe 138 (577)
T KOG1258|consen 60 DVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLAFLKNNNGDPETLRDLFE 138 (577)
T ss_pred HHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence 34566666666552 4444 456666677788999999999999886 467777777777665544 578888888888
Q ss_pred HHHHc-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHH---Hcc------CCHHHHHHHH
Q 011323 152 EMVNA-GI-EPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITAC---GQS------GAVDRAFDVL 220 (488)
Q Consensus 152 ~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~---~~~------g~~~~a~~~~ 220 (488)
..... |. -.+...|...|..-..++++.....+|++.++.. ...++....-| ... ...+++.++-
T Consensus 139 ~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP----~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~ 214 (577)
T KOG1258|consen 139 RAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIP----LHQLNRHFDRFKQLLNQNEEKILLSIDELIQLR 214 (577)
T ss_pred HHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhh----hhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHh
Confidence 87764 32 2466788888988888999999999999998652 12222222211 111 2233333322
Q ss_pred HHHhhC----------------CCC-CCCC-c--chHHHHHHHH-------HhcCCHHHHHHHHHHHHhc---CC----C
Q 011323 221 AEMNAE----------------VHP-VDPD-H--ITIGALMKAC-------ANAGQVDRAREVYKMIHKY---NI----K 266 (488)
Q Consensus 221 ~~~~~~----------------~~~-~~~~-~--~~~~~l~~~~-------~~~~~~~~a~~~~~~~~~~---~~----~ 266 (488)
.....+ ... ..|. . ...+.+-..+ -...........|+.-.+. .+ .
T Consensus 215 ~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~ 294 (577)
T KOG1258|consen 215 SDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQ 294 (577)
T ss_pred hhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccH
Confidence 222110 000 0010 0 0111111111 1111111111222211111 01 1
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--ccHHHHHH
Q 011323 267 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGIS--VGIISYSS 344 (488)
Q Consensus 267 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~ 344 (488)
++..+|...+..-...|+++.+.-.|+...-.-.. -...|-..+.-....|+.+.|..++....+-.++ |....+.+
T Consensus 295 aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~-Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a 373 (577)
T KOG1258|consen 295 AQLKNWRYYLDFEITLGDFSRVFILFERCLIPCAL-YDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEA 373 (577)
T ss_pred HHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhh-hHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHH
Confidence 23456778888888999999999988886542111 1223333344444458989888888776665433 33333333
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHcCCChhHHH---HHHHHHHhCCCCCCHHHHHHHHH---
Q 011323 345 LMGACSNAKNWQKALELYEHMKSIKLKPTVS-TMNALITALCDGDQLPKTM---EVLSDMKSLGLCPNTITYSILLV--- 417 (488)
Q Consensus 345 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~---~~~~~~~~~~~~p~~~~~~~l~~--- 417 (488)
. ..-..|++..|..+++.+.+.- |+.. .-..-+....+.|..+.+. .++....+. .-+..+...+.-
T Consensus 374 ~--f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~--~~~~~i~~~l~~~~~ 447 (577)
T KOG1258|consen 374 R--FEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEG--KENNGILEKLYVKFA 447 (577)
T ss_pred H--HHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccc--ccCcchhHHHHHHHH
Confidence 3 3455789999999999987653 4432 2223344556777877777 333333321 122222222222
Q ss_pred --HHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHh
Q 011323 418 --ACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS 455 (488)
Q Consensus 418 --~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 455 (488)
.+.-.++.+.|..++.++.+. .+++...|..++..+.
T Consensus 448 r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~ 486 (577)
T KOG1258|consen 448 RLRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFEL 486 (577)
T ss_pred HHHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHH
Confidence 233467889999999988874 5566667777777654
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.29 E-value=0.15 Score=29.85 Aligned_cols=27 Identities=15% Similarity=0.094 Sum_probs=13.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHc
Q 011323 95 FNMLMSVCASSKDSEGAFQVLRLVQEA 121 (488)
Q Consensus 95 ~~~l~~~~~~~~~~~~a~~~~~~~~~~ 121 (488)
+..+...|...|++++|+++|++..+.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 334444455555555555555554443
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.18 E-value=1.4 Score=32.82 Aligned_cols=90 Identities=14% Similarity=0.070 Sum_probs=41.2
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC---HHHHHHHHHHHhhcCCH
Q 011323 349 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN---TITYSILLVACERKDDV 425 (488)
Q Consensus 349 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~ 425 (488)
++..|+++.|++.|.+....- +.+...||.-..++.-.|+.++|+.-+++..+..-..+ -..|..-...|...|+-
T Consensus 53 laE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 344555555555555544332 23445555555555555555555555555444211111 11222223344455555
Q ss_pred HHHHHHHHHHHHcC
Q 011323 426 EVGLMLLSQAKEDG 439 (488)
Q Consensus 426 ~~a~~~~~~~~~~~ 439 (488)
+.|..-|+...+.|
T Consensus 132 d~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 132 DAARADFEAAAQLG 145 (175)
T ss_pred HHHHHhHHHHHHhC
Confidence 55555555544433
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=94.17 E-value=7 Score=40.70 Aligned_cols=114 Identities=14% Similarity=0.129 Sum_probs=56.2
Q ss_pred CCCHHHHHHHH----HHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCc
Q 011323 159 EPNVHTYGALI----DGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH 234 (488)
Q Consensus 159 ~~~~~~~~~l~----~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 234 (488)
.|+...+.... ..+...+.+++|--.|+..-+. ...+.+|..+|+|.+|+.+..++... .|.
T Consensus 932 ~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~~-----~de 997 (1265)
T KOG1920|consen 932 KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL---------EKALKAYKECGDWREALSLAAQLSEG-----KDE 997 (1265)
T ss_pred ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH---------HHHHHHHHHhccHHHHHHHHHhhcCC-----HHH
Confidence 44544444333 3333455666666555543221 23456666677777777766665431 221
Q ss_pred ch--HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHH
Q 011323 235 IT--IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD 294 (488)
Q Consensus 235 ~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 294 (488)
.. -..|..-+...+++-+|-++.....+. ..-.+..+++...+++|.++...
T Consensus 998 ~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd--------~~~av~ll~ka~~~~eAlrva~~ 1051 (1265)
T KOG1920|consen 998 LVILAEELVSRLVEQRKHYEAAKILLEYLSD--------PEEAVALLCKAKEWEEALRVASK 1051 (1265)
T ss_pred HHHHHHHHHHHHHHcccchhHHHHHHHHhcC--------HHHHHHHHhhHhHHHHHHHHHHh
Confidence 11 134555555566665555555544432 11223344455556666655443
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=93.94 E-value=1.8 Score=35.02 Aligned_cols=61 Identities=10% Similarity=0.084 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011323 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN--VHTYGALIDGCAKAGQVAKAFGAYGIMR 189 (488)
Q Consensus 129 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 189 (488)
.+..+...|.+.|+.+.|.+.|.++.+....+. ...+-.+++...-.+++..+...+.+..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 455556666666666666666666555432222 2344555555556666666655555544
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.68 E-value=3.7 Score=34.42 Aligned_cols=205 Identities=14% Similarity=0.120 Sum_probs=94.6
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 011323 199 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINC 278 (488)
Q Consensus 199 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 278 (488)
.|.....+|....++++|...+.+.... ..-+... +-..+.++.|.-+.+.+.... .-...|+--...
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~---yEnnrsl-------fhAAKayEqaamLake~~kls--Evvdl~eKAs~l 100 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKG---YENNRSL-------FHAAKAYEQAAMLAKELSKLS--EVVDLYEKASEL 100 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHH---HHhcccH-------HHHHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHH
Confidence 3444455666677777777666555431 1111111 111223344444444444321 122345555556
Q ss_pred HHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---CC--CCccHHHHHHHHHHHHhcC
Q 011323 279 CSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN---QG--ISVGIISYSSLMGACSNAK 353 (488)
Q Consensus 279 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~--~~~~~~~~~~l~~~~~~~g 353 (488)
|..+|.++.|-..+++.-+. ...-+++.|++++++... .+ ...-...+..+-+.+.+..
T Consensus 101 Y~E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~ 164 (308)
T KOG1585|consen 101 YVECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLE 164 (308)
T ss_pred HHHhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhH
Confidence 66666666655555543321 112233344444433221 10 0111223344444555556
Q ss_pred CHHHHHHHHHHHHh----CCCCCCH-HHHHHHHHHHHcCCChhHHHHHHHHHHhCC---CCCCHHHHHHHHHHHhhcCCH
Q 011323 354 NWQKALELYEHMKS----IKLKPTV-STMNALITALCDGDQLPKTMEVLSDMKSLG---LCPNTITYSILLVACERKDDV 425 (488)
Q Consensus 354 ~~~~a~~~~~~~~~----~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~p~~~~~~~l~~~~~~~g~~ 425 (488)
.+.+|-..+.+-.. ..-.++. ..|...|-.+.-..++..|.+.++.-.+.+ -+-+..+...|+.+| ..|+.
T Consensus 165 kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~ 243 (308)
T KOG1585|consen 165 KFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDI 243 (308)
T ss_pred HhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCH
Confidence 66655544433221 1111221 234445555556667777777777643321 123455666777766 45676
Q ss_pred HHHHHHH
Q 011323 426 EVGLMLL 432 (488)
Q Consensus 426 ~~a~~~~ 432 (488)
+++.+++
T Consensus 244 E~~~kvl 250 (308)
T KOG1585|consen 244 EEIKKVL 250 (308)
T ss_pred HHHHHHH
Confidence 6666554
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.57 E-value=2.6 Score=32.24 Aligned_cols=23 Identities=22% Similarity=0.280 Sum_probs=9.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh
Q 011323 240 LMKACANAGQVDRAREVYKMIHK 262 (488)
Q Consensus 240 l~~~~~~~~~~~~a~~~~~~~~~ 262 (488)
++.+|.+.++++.|...++...+
T Consensus 53 l~yayy~~~~y~~A~a~~~rFir 75 (142)
T PF13512_consen 53 LAYAYYKQGDYEEAIAAYDRFIR 75 (142)
T ss_pred HHHHHHHccCHHHHHHHHHHHHH
Confidence 33334444444444444443333
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=93.49 E-value=1.5 Score=33.56 Aligned_cols=52 Identities=12% Similarity=0.004 Sum_probs=40.4
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCCC
Q 011323 36 IRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN 89 (488)
Q Consensus 36 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 89 (488)
+..++++++..+++.+.-.. |........-..++...|++.+|.++|..+..
T Consensus 21 L~~~d~~D~e~lLdALrvLr--P~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~ 72 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVLR--PNLKELDMFDGWLLIARGNYDEAARILRELLS 72 (153)
T ss_pred HhcCCHHHHHHHHHHHHHhC--CCccccchhHHHHHHHcCCHHHHHHHHHhhhc
Confidence 36888888888888887665 66777777777778888888888888887764
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.41 E-value=2.7 Score=32.09 Aligned_cols=55 Identities=15% Similarity=0.160 Sum_probs=27.1
Q ss_pred HhcCCHHHHHHHHHHHHHCC--CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 011323 315 GHAGKVEAAFEILQEAKNQG--ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 369 (488)
Q Consensus 315 ~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 369 (488)
.+.|++++|.+.|+.+...- .+.....--.++.+|.+.+++++|...+++.++.+
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLh 77 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH 77 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 34455555555555554431 11223344445555555555555555555555443
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=93.36 E-value=3.8 Score=36.50 Aligned_cols=126 Identities=17% Similarity=0.061 Sum_probs=53.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCC-----CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCCHHHHH--
Q 011323 310 LIDFAGHAGKVEAAFEILQEAKNQG-----ISVGIISYSSLMGACSNAKNWQKALELYEHMKS----IKLKPTVSTMN-- 378 (488)
Q Consensus 310 l~~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~~-- 378 (488)
+..+....+.++++++.|+...+.. ......++-.|...|.+..|+++|.-+..+..+ .++..-..-|.
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~ 207 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM 207 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence 3334444445555555555443211 011123455555555555555555544433321 12111111111
Q ss_pred ---HHHHHHHcCCChhHHHHHHHHHH----hCCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHH
Q 011323 379 ---ALITALCDGDQLPKTMEVLSDMK----SLGLCPN-TITYSILLVACERKDDVEVGLMLLSQA 435 (488)
Q Consensus 379 ---~l~~~~~~~~~~~~a~~~~~~~~----~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~ 435 (488)
.|..++-..|..-.|.+.-++.. ..|-++. ......+.+.|...|+.+.|..-|+.+
T Consensus 208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 12233444555555555444432 2232221 223344455555566666555555543
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=93.30 E-value=6.9 Score=36.36 Aligned_cols=131 Identities=13% Similarity=0.078 Sum_probs=98.1
Q ss_pred CCchhHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhC---CCCCHHHHHHHHH
Q 011323 24 DVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV---PNPTLSTFNMLMS 100 (488)
Q Consensus 24 ~~~~~~~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~l~~ 100 (488)
.......+++.-...|++..|-+-....+++. |..+....+...+....|+++.+...+..+ ......+...+++
T Consensus 288 ~~~~~~~si~k~~~~gd~~aas~~~~~~lr~~--~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r 365 (831)
T PRK15180 288 QIREITLSITKQLADGDIIAASQQLFAALRNQ--QQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLR 365 (831)
T ss_pred chhHHHHHHHHHhhccCHHHHHHHHHHHHHhC--CCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHH
Confidence 45566677888888999999988777777664 455555556667778889999999988544 3456678888899
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcC
Q 011323 101 VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAG 157 (488)
Q Consensus 101 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 157 (488)
...+.+++++|..+-+-|....++ +...........-..|-++++.-.|+++....
T Consensus 366 ~~~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 366 SLHGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred hhhchhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 999999999999999999876654 44444444444556688899999999887654
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.95 E-value=1.2 Score=42.31 Aligned_cols=157 Identities=13% Similarity=0.150 Sum_probs=82.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHhcCChh
Q 011323 30 HSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSE 109 (488)
Q Consensus 30 ~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 109 (488)
.-+..++-.|+++.|-.++..+.+.. +..++.+..++|-.++|+++.- .|+.. .....+.|+.+
T Consensus 591 leyqt~vmrrd~~~a~~vLp~I~k~~--------rt~va~Fle~~g~~e~AL~~s~---D~d~r-----Felal~lgrl~ 654 (794)
T KOG0276|consen 591 LEYQTLVLRRDLEVADGVLPTIPKEI--------RTKVAHFLESQGMKEQALELST---DPDQR-----FELALKLGRLD 654 (794)
T ss_pred HHHHHHhhhccccccccccccCchhh--------hhhHHhHhhhccchHhhhhcCC---Chhhh-----hhhhhhcCcHH
Confidence 33445556667766666555554321 2233444555555555554432 11111 22334556666
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011323 110 GAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189 (488)
Q Consensus 110 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 189 (488)
.|.++..+. .+..-|..|.++..+.+++..|.+.|..... |..|+-.+...|+.+....+-....
T Consensus 655 iA~~la~e~------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~ 719 (794)
T KOG0276|consen 655 IAFDLAVEA------NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAK 719 (794)
T ss_pred HHHHHHHhh------cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHH
Confidence 666655432 2445666677777777777777766665542 3355556666666665555555555
Q ss_pred hCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHH
Q 011323 190 SKNVKPDRVVFNALITACGQSGAVDRAFDVLAEM 223 (488)
Q Consensus 190 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 223 (488)
+.|. .|...-+|...|+++++.+++..-
T Consensus 720 ~~g~------~N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 720 KQGK------NNLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred hhcc------cchHHHHHHHcCCHHHHHHHHHhc
Confidence 4442 122333455566666666666553
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=92.89 E-value=1.9 Score=34.79 Aligned_cols=61 Identities=10% Similarity=0.125 Sum_probs=32.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 011323 341 SYSSLMGACSNAKNWQKALELYEHMKSIKLKPT--VSTMNALITALCDGDQLPKTMEVLSDMK 401 (488)
Q Consensus 341 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 401 (488)
.+..+...|.+.|+.+.|.+.|.++.+....+. ...+-.+|+.....+++..+...+.+..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 455555666666666666666666554432222 2233445555555556655555555443
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=92.67 E-value=2.6 Score=29.80 Aligned_cols=61 Identities=20% Similarity=0.314 Sum_probs=38.5
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHc-CCCCcHHHHHHHHHHH
Q 011323 392 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED-GVIPNLVMFKCIIGMC 454 (488)
Q Consensus 392 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~ 454 (488)
+..+-+..+....+-|++....+.+++|.+.+++.-|.++++-++.. |.. ...|..++.-+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~--~~~Y~~~lqEl 89 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNK--KEIYPYILQEL 89 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCh--HHHHHHHHHHH
Confidence 45555666666667788888888888888888888888888777654 322 22677666553
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.65 E-value=5.5 Score=33.51 Aligned_cols=199 Identities=16% Similarity=0.075 Sum_probs=100.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHH-H
Q 011323 236 TIGALMKACANAGQVDRAREVYKMIHKY-NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID-F 313 (488)
Q Consensus 236 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~-~ 313 (488)
.+......+...+++..+...+...... ........+......+...+.+..+...+.........+ ......... .
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 139 (291)
T COG0457 61 LLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALGA 139 (291)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHHH
Confidence 3344444445555555555555444431 112333444444455555555555555555555433322 111111112 4
Q ss_pred HHhcCCHHHHHHHHHHHHHCCC--CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHcCCCh
Q 011323 314 AGHAGKVEAAFEILQEAKNQGI--SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP-TVSTMNALITALCDGDQL 390 (488)
Q Consensus 314 ~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~ 390 (488)
+...|+++.+...+........ ......+......+...++.+.+...+....... .. ....+..+...+...+++
T Consensus 140 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 218 (291)
T COG0457 140 LYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLN-PDDDAEALLNLGLLYLKLGKY 218 (291)
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC-cccchHHHHHhhHHHHHcccH
Confidence 5566666666666666544211 1122333333333556666777777766666543 22 345566666666666677
Q ss_pred hHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHHHc
Q 011323 391 PKTMEVLSDMKSLGLCPN-TITYSILLVACERKDDVEVGLMLLSQAKED 438 (488)
Q Consensus 391 ~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 438 (488)
+.|...+...... .|+ ...+..+...+...+..+.+...+.+..+.
T Consensus 219 ~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 219 EEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 7777777766653 233 333444444444555667777766666653
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=92.52 E-value=0.34 Score=26.83 Aligned_cols=26 Identities=19% Similarity=0.111 Sum_probs=19.4
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHH
Q 011323 411 TYSILLVACERKDDVEVGLMLLSQAK 436 (488)
Q Consensus 411 ~~~~l~~~~~~~g~~~~a~~~~~~~~ 436 (488)
+|..|...|.+.|++++|++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36677888888888888888888754
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.43 E-value=5.9 Score=33.32 Aligned_cols=54 Identities=15% Similarity=0.002 Sum_probs=26.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCccHHHHHHHHHHHHhcCCHHHHHHH
Q 011323 307 LSALIDFAGHAGKVEAAFEILQEAKNQG---ISVGIISYSSLMGACSNAKNWQKALEL 361 (488)
Q Consensus 307 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~~ 361 (488)
+...|-.+....++..|...++.-.+.+ -..+..+...|+.+| ..|+.+++.++
T Consensus 193 ~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kv 249 (308)
T KOG1585|consen 193 YVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKV 249 (308)
T ss_pred HHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHH
Confidence 3334444555556666666665533221 123445555555555 44555555444
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=92.38 E-value=7.5 Score=34.46 Aligned_cols=132 Identities=14% Similarity=0.244 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHc--cCC----HHHHHHHHHHHhhCCCCCC-CCcchHHHHHHHHHhcCC-
Q 011323 178 VAKAFGAYGIMRSKNVKPDRVVFNALITACGQ--SGA----VDRAFDVLAEMNAEVHPVD-PDHITIGALMKACANAGQ- 249 (488)
Q Consensus 178 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~--~g~----~~~a~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~- 249 (488)
+++.+.+++.|.+.|+..+..+|-+..-.... ..+ ...+..+++.|++..+-+. ++...+..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 45667788888888887777666553333222 222 4578888888887643332 334445554432 3333
Q ss_pred ---HHHHHHHHHHHHhcCCCCCH--HHHHHHHHHHHccCC--hHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 011323 250 ---VDRAREVYKMIHKYNIKGTP--EVYTIAINCCSQTGD--WEFACSVYDDMTKKGVIPDEVFLSALI 311 (488)
Q Consensus 250 ---~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~ 311 (488)
.+.+...|+.+.+.|+..+. ...+.++........ ...+.++++.+.+.|+++....|..+.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence 34556666666666655432 222333322222211 235566666666666666555555443
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.28 E-value=12 Score=36.73 Aligned_cols=50 Identities=14% Similarity=0.258 Sum_probs=22.2
Q ss_pred CHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhCC
Q 011323 319 KVEAAFEILQEAKNQGISVGIISYSSLMGACSN-AKNWQKALELYEHMKSIK 369 (488)
Q Consensus 319 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~ 369 (488)
+.+.|..++....+.| .|+...+-..+..... ..+...|.++|......|
T Consensus 308 d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G 358 (552)
T KOG1550|consen 308 DYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG 358 (552)
T ss_pred cHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC
Confidence 4455666665555554 2223222222211111 134556666666655554
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=92.18 E-value=1.1 Score=39.31 Aligned_cols=90 Identities=18% Similarity=0.106 Sum_probs=60.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCCCCC---HHHHHHHHHHHHhcCChh
Q 011323 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPT---LSTFNMLMSVCASSKDSE 109 (488)
Q Consensus 33 ~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~ 109 (488)
|.+.++|++++|++.|....... |.+.+++..-+..|.+.+.+..|..-++.+...| +..|..-+.+-...|...
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~--P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~ 182 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVY--PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNM 182 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccC--CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHH
Confidence 56678999999999999887765 7888888888888888888888877776554322 223444444444445555
Q ss_pred HHHHHHHHHHHcCCCCC
Q 011323 110 GAFQVLRLVQEAGLKAD 126 (488)
Q Consensus 110 ~a~~~~~~~~~~~~~~~ 126 (488)
+|.+-.+...+. .|+
T Consensus 183 EAKkD~E~vL~L--EP~ 197 (536)
T KOG4648|consen 183 EAKKDCETVLAL--EPK 197 (536)
T ss_pred HHHHhHHHHHhh--Ccc
Confidence 555555555543 454
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=92.06 E-value=8 Score=34.07 Aligned_cols=162 Identities=13% Similarity=0.086 Sum_probs=87.0
Q ss_pred HhcCChhHHHHHHHHHHHcC--CCCCH------HHHHHHHHHHHHcC-CHhHHHHHHHHHHHc--------CCCCCH---
Q 011323 103 ASSKDSEGAFQVLRLVQEAG--LKADC------KLYTTLITTCAKSG-KVDAMFEVFHEMVNA--------GIEPNV--- 162 (488)
Q Consensus 103 ~~~~~~~~a~~~~~~~~~~~--~~~~~------~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~--------~~~~~~--- 162 (488)
.+.|+.+.|..++.+..... ..|+. ..|+.-.. ....+ +++.|...+++..+. ...|+.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~-l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKS-LLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHH-HHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 35566777777766665322 12221 12232222 23444 777776666554332 122332
Q ss_pred --HHHHHHHHHHHhcCCHH---HHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchH
Q 011323 163 --HTYGALIDGCAKAGQVA---KAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 237 (488)
Q Consensus 163 --~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 237 (488)
.+...++.+|...+..+ +|..+++.+.... +-.+.++..-++.+.+.++.+.+.+.+.+|.... .-....+
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~---~~~e~~~ 158 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV---DHSESNF 158 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc---ccccchH
Confidence 35667777887777654 5566666665442 2235556566777777899999999999998752 2122344
Q ss_pred HHHHHHHHh--cCCHHHHHHHHHHHHhcCCCCCH
Q 011323 238 GALMKACAN--AGQVDRAREVYKMIHKYNIKGTP 269 (488)
Q Consensus 238 ~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~ 269 (488)
...+..+.. ......+...+..+....+.++.
T Consensus 159 ~~~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 159 DSILHHIKQLAEKSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHHHHHHhhCcHHHHHHHHHHHHHHhCCCh
Confidence 444444421 12234455555544444344443
|
It is also involved in sporulation []. |
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=91.95 E-value=1.6 Score=30.48 Aligned_cols=63 Identities=17% Similarity=0.259 Sum_probs=42.1
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 011323 391 PKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 454 (488)
Q Consensus 391 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 454 (488)
-++.+-+..+....+-|++....+.+++|.+.+++.-|.++++-.+.. ...+...|..++.-+
T Consensus 24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K-~~~~~~~y~~~lqei 86 (103)
T cd00923 24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK-CGAHKEIYPYILQEI 86 (103)
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccCchhhHHHHHHHH
Confidence 355555666666667788888888888888888888888888776643 112444666666543
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=91.95 E-value=8.5 Score=34.13 Aligned_cols=131 Identities=18% Similarity=0.281 Sum_probs=61.8
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--cC----CHHHHHHHHHHHHHCCC---CccHHHHHHHHHHHHhcCC---
Q 011323 287 FACSVYDDMTKKGVIPDEVFLSALIDFAGH--AG----KVEAAFEILQEAKNQGI---SVGIISYSSLMGACSNAKN--- 354 (488)
Q Consensus 287 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g----~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~--- 354 (488)
....+++.|.+.|+.-+..+|-+....... .. ....+..+++.|++... .++-..+..++.. ..++
T Consensus 80 ~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~ 157 (297)
T PF13170_consen 80 EVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEE 157 (297)
T ss_pred HHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHH
Confidence 344455556666555444444332222221 11 23456666777666542 1233344444322 2222
Q ss_pred -HHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHcCC-C--hhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 011323 355 -WQKALELYEHMKSIKLKPTVS-TMNALITALCDGD-Q--LPKTMEVLSDMKSLGLCPNTITYSILLVAC 419 (488)
Q Consensus 355 -~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~-~--~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 419 (488)
.+.++.+|+.+.+.|+..+.. -+.+-+-++.... . ..++.++++.+.+.|+++....|..+.-..
T Consensus 158 l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLa 227 (297)
T PF13170_consen 158 LAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLA 227 (297)
T ss_pred HHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHH
Confidence 244556666666655544322 2222222222211 1 335666777777777777766666554433
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=91.76 E-value=5.2 Score=31.29 Aligned_cols=91 Identities=12% Similarity=0.095 Sum_probs=41.1
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHH-HHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHH
Q 011323 350 SNAKNWQKALELYEHMKSIKLKPTVSTMN-ALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVG 428 (488)
Q Consensus 350 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a 428 (488)
.+.++.+.+..++..+.-. .|...... .-...+...|++.+|+++|+++.+. .|....-..|+..|.....-..=
T Consensus 21 l~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~--~~~~p~~kALlA~CL~~~~D~~W 96 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEER--APGFPYAKALLALCLYALGDPSW 96 (160)
T ss_pred HccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHHcCChHH
Confidence 3455666666666665543 23222221 2233445566666666666665543 23333334444444433222222
Q ss_pred HHHHHHHHHcCCCCcH
Q 011323 429 LMLLSQAKEDGVIPNL 444 (488)
Q Consensus 429 ~~~~~~~~~~~~~~~~ 444 (488)
..+-.++.+.+-.|+.
T Consensus 97 r~~A~evle~~~d~~a 112 (160)
T PF09613_consen 97 RRYADEVLESGADPDA 112 (160)
T ss_pred HHHHHHHHhcCCChHH
Confidence 2333444454444444
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=91.63 E-value=5.7 Score=31.43 Aligned_cols=131 Identities=11% Similarity=0.122 Sum_probs=72.2
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCccHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHH--HHHHHcCCCh
Q 011323 315 GHAGKVEAAFEILQEAKNQGISVGII-SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS-TMNAL--ITALCDGDQL 390 (488)
Q Consensus 315 ~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l--~~~~~~~~~~ 390 (488)
.+.+..++|+.-|..+.+.|...-+. ..........+.|+...|...|+++-.-...|-.. -..-| ...+...|.+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 44566677777777777665432221 12222334456777777777777765433223221 01111 1234567777
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHH
Q 011323 391 PKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 445 (488)
Q Consensus 391 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 445 (488)
+.....++.+...+-+-....-..|.-+-.+.|++..|...|..+......|...
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~aprni 203 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAPRNI 203 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCcHHH
Confidence 7776666666543322233344556666677788888888887777655555443
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.55 E-value=7.3 Score=32.54 Aligned_cols=18 Identities=22% Similarity=0.582 Sum_probs=8.7
Q ss_pred hcCCHHHHHHHHHHHHhC
Q 011323 351 NAKNWQKALELYEHMKSI 368 (488)
Q Consensus 351 ~~g~~~~a~~~~~~~~~~ 368 (488)
..+++.+|+++|+++...
T Consensus 166 ~leqY~~Ai~iyeqva~~ 183 (288)
T KOG1586|consen 166 QLEQYSKAIDIYEQVARS 183 (288)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344455555555554443
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=91.55 E-value=5.9 Score=32.06 Aligned_cols=118 Identities=9% Similarity=0.059 Sum_probs=71.1
Q ss_pred hcCCHHHHHHHHHHHHHCC-CCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCC-CCCHHHHHH-----HHHHHHhcCChh
Q 011323 37 RQGRISECIDLLEDMERKG-LLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP-NPTLSTFNM-----LMSVCASSKDSE 109 (488)
Q Consensus 37 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~-----l~~~~~~~~~~~ 109 (488)
+.+.. +.....+.+.... ...........+.......|++++|...++... .+....+.. |.+.....|.++
T Consensus 65 ~ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D 143 (207)
T COG2976 65 QAKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKAD 143 (207)
T ss_pred hcCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHH
Confidence 34444 4444555555443 222333444556666777788888888887654 333333333 334567778888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcC
Q 011323 110 GAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAG 157 (488)
Q Consensus 110 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 157 (488)
+|+.+++.....+. .......-.+.+...|+-++|..-|......+
T Consensus 144 ~AL~~L~t~~~~~w--~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 144 AALKTLDTIKEESW--AAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHhccccccH--HHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 88888877665432 22233444567778888888888888877664
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=91.39 E-value=0.58 Score=25.91 Aligned_cols=23 Identities=22% Similarity=0.148 Sum_probs=12.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHH
Q 011323 165 YGALIDGCAKAGQVAKAFGAYGI 187 (488)
Q Consensus 165 ~~~l~~~~~~~~~~~~a~~~~~~ 187 (488)
|+.|...|.+.|++++|+.+|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 44555555556666666555555
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=91.31 E-value=6.2 Score=31.29 Aligned_cols=28 Identities=14% Similarity=0.315 Sum_probs=12.3
Q ss_pred HHhCCCCCCHhHHHHHHHHHHccCCHHH
Q 011323 188 MRSKNVKPDRVVFNALITACGQSGAVDR 215 (488)
Q Consensus 188 ~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 215 (488)
+...+++|+...+..++..+.+.|++..
T Consensus 20 l~~~~i~~~~~L~~lli~lLi~~~~~~~ 47 (167)
T PF07035_consen 20 LNQHNIPVQHELYELLIDLLIRNGQFSQ 47 (167)
T ss_pred HHHcCCCCCHHHHHHHHHHHHHcCCHHH
Confidence 3334444444444444444444444433
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.26 E-value=8.5 Score=32.74 Aligned_cols=172 Identities=13% Similarity=0.034 Sum_probs=82.4
Q ss_pred HhcCCHHHHHHHHHHHHhCCC--CCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhc---
Q 011323 173 AKAGQVAKAFGAYGIMRSKNV--KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA--- 247 (488)
Q Consensus 173 ~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--- 247 (488)
.+.|++++|.+.|+.+..... +-...+.-.++-++.+.+++++|+..+++..... +..|| ..|..-|.+.+..
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ly-P~~~n-~dY~~YlkgLs~~~~i 122 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLY-PTHPN-ADYAYYLKGLSYFFQI 122 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC-CCCCC-hhHHHHHHHHHHhccC
Confidence 456777777777777765421 1123444455566667777777777777766542 22333 2333333333321
Q ss_pred ----CCHHHH---HHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 011323 248 ----GQVDRA---REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV 320 (488)
Q Consensus 248 ----~~~~~a---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 320 (488)
.|...+ ..-|+.+... |=.+.=...|......+... =...=..+...|.+.|.+
T Consensus 123 ~~~~rDq~~~~~A~~~f~~~i~r---------------yPnS~Ya~dA~~~i~~~~d~----LA~~Em~IaryY~kr~~~ 183 (254)
T COG4105 123 DDVTRDQSAARAAFAAFKELVQR---------------YPNSRYAPDAKARIVKLNDA----LAGHEMAIARYYLKRGAY 183 (254)
T ss_pred CccccCHHHHHHHHHHHHHHHHH---------------CCCCcchhhHHHHHHHHHHH----HHHHHHHHHHHHHHhcCh
Confidence 122222 2222222222 11111111121111111110 000112344566777777
Q ss_pred HHHHHHHHHHHHCCCCc---cHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011323 321 EAAFEILQEAKNQGISV---GIISYSSLMGACSNAKNWQKALELYEHMK 366 (488)
Q Consensus 321 ~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 366 (488)
..|..-++.+.+. .+- ....+-.+..+|...|-.++|.+.-.-+.
T Consensus 184 ~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~ 231 (254)
T COG4105 184 VAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLG 231 (254)
T ss_pred HHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 7777777777765 222 23345556677777777777766655443
|
|
| >PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human | Back alignment and domain information |
|---|
Probab=91.22 E-value=17 Score=36.04 Aligned_cols=150 Identities=10% Similarity=0.039 Sum_probs=32.7
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011323 289 CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 368 (488)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 368 (488)
...++.+..+-+..+......++..|.+.|-.+.+.++.+.+-..-. ...-|..-+..+.++|+...+..+.+.+.+.
T Consensus 390 ~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~ll~~ 467 (566)
T PF07575_consen 390 RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADRLLEE 467 (566)
T ss_dssp HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH------------------
T ss_pred HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 34444444443444566667777777777877777777776654321 2234555555566666665555554444422
Q ss_pred CCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHH
Q 011323 369 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 448 (488)
Q Consensus 369 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 448 (488)
....+......++....... +....+.| ..+|.-+-. ..+.|++.+|.+.+-.+.+.++.|...-..
T Consensus 468 ~~~~~~~~~~~ll~~i~~~~-----------~~~~~L~f-la~yreF~~-~~~~~~~~~Aa~~Lv~Ll~~~~~Pk~f~~~ 534 (566)
T PF07575_consen 468 YCNNGEPLDDDLLDNIGSPM-----------LLSQRLSF-LAKYREFYE-LYDEGDFREAASLLVSLLKSPIAPKSFWPL 534 (566)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HhcCCCcccHHHHHHhcchh-----------hhhhhhHH-HHHHHHHHH-HHhhhhHHHHHHHHHHHHCCCCCcHHHHHH
Confidence 21111111222222111111 00000000 001111111 123477778877777777777777776665
Q ss_pred HHHHH
Q 011323 449 CIIGM 453 (488)
Q Consensus 449 ~li~~ 453 (488)
.+.++
T Consensus 535 LL~d~ 539 (566)
T PF07575_consen 535 LLCDA 539 (566)
T ss_dssp -----
T ss_pred HHHHH
Confidence 55554
|
Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B. |
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=90.83 E-value=20 Score=36.34 Aligned_cols=227 Identities=13% Similarity=0.055 Sum_probs=117.5
Q ss_pred HHHHcCCHhHHHHHHHHHHHcCCCCCHH-------HHHHHHH-HHHhcCCHHHHHHHHHHHHhC----CCCCCHhHHHHH
Q 011323 136 TCAKSGKVDAMFEVFHEMVNAGIEPNVH-------TYGALID-GCAKAGQVAKAFGAYGIMRSK----NVKPDRVVFNAL 203 (488)
Q Consensus 136 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~-~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l 203 (488)
......++++|..++.++...-..|+.. .|+.+-. .....|+++.|.++-+..... -..+....+..+
T Consensus 424 ~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~ 503 (894)
T COG2909 424 LLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVL 503 (894)
T ss_pred HHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhh
Confidence 3456688999999988876642222221 3443322 233578888888887776543 223445666777
Q ss_pred HHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHH-----HHHHHhcCCHHHH--HHHHHHHHhc---CCC---CCHH
Q 011323 204 ITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGAL-----MKACANAGQVDRA--REVYKMIHKY---NIK---GTPE 270 (488)
Q Consensus 204 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l-----~~~~~~~~~~~~a--~~~~~~~~~~---~~~---~~~~ 270 (488)
..+..-.|++++|..+..+..+.. -..+...+..+ ...+...|+...+ ...|...... ..+ +-..
T Consensus 504 ~~a~~~~G~~~~Al~~~~~a~~~a--~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~ 581 (894)
T COG2909 504 GEAAHIRGELTQALALMQQAEQMA--RQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVR 581 (894)
T ss_pred hHHHHHhchHHHHHHHHHHHHHHH--HHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHH
Confidence 777888899999988877665421 12233333222 2334556643322 2233322221 111 1123
Q ss_pred HHHHHHHHHHcc-CChHHHHHHHHHHHhCCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHCCCC----ccHHHHH
Q 011323 271 VYTIAINCCSQT-GDWEFACSVYDDMTKKGVIPDEVFL--SALIDFAGHAGKVEAAFEILQEAKNQGIS----VGIISYS 343 (488)
Q Consensus 271 ~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~ 343 (488)
++..++.++.+. +...++..-+.--......|-.... ..++......|++++|...+.++...... ++...-.
T Consensus 582 ~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~ 661 (894)
T COG2909 582 IRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAA 661 (894)
T ss_pred HHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHH
Confidence 444455555441 1111222222222222222222222 36777888899999999998888754322 2222222
Q ss_pred HHHHH--HHhcCCHHHHHHHHHH
Q 011323 344 SLMGA--CSNAKNWQKALELYEH 364 (488)
Q Consensus 344 ~l~~~--~~~~g~~~~a~~~~~~ 364 (488)
..+.. ....|+...+.....+
T Consensus 662 ~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 662 YKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHhhHHHhcccCCHHHHHHHHHh
Confidence 22222 2356777776665544
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.78 E-value=5 Score=38.37 Aligned_cols=43 Identities=21% Similarity=0.186 Sum_probs=21.0
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHH
Q 011323 174 KAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAE 222 (488)
Q Consensus 174 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 222 (488)
+.|+++.|.++..+.. +..-|..|.++....|++..|.+.|..
T Consensus 649 ~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~ 691 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLR 691 (794)
T ss_pred hcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHh
Confidence 4455555544433322 334455555555555555555555544
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=90.73 E-value=11 Score=33.17 Aligned_cols=235 Identities=13% Similarity=0.048 Sum_probs=109.8
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH----hHHHHHHHHHHHcCCCCCHH
Q 011323 88 PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV----DAMFEVFHEMVNAGIEPNVH 163 (488)
Q Consensus 88 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~a~~~~~~~~~~~~~~~~~ 163 (488)
..+|.......+.++...|.. .+...+..+.. .++...-...+.++++.|+. +++...+..+... .++..
T Consensus 33 ~d~d~~vR~~A~~aL~~~~~~-~~~~~l~~ll~---~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~ 106 (280)
T PRK09687 33 DDHNSLKRISSIRVLQLRGGQ-DVFRLAIELCS---SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSAC 106 (280)
T ss_pred hCCCHHHHHHHHHHHHhcCcc-hHHHHHHHHHh---CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHH
Confidence 345666666666666666543 33333333433 23455555556666666653 3455666555333 45555
Q ss_pred HHHHHHHHHHhcCCH-----HHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHH
Q 011323 164 TYGALIDGCAKAGQV-----AKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 238 (488)
Q Consensus 164 ~~~~l~~~~~~~~~~-----~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 238 (488)
+-...+.++...+.. ..+...+..... .++..+-...+.++.+.++ +++...+-.+... +|...-.
T Consensus 107 VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d-----~~~~VR~ 177 (280)
T PRK09687 107 VRASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLKD-----PNGDVRN 177 (280)
T ss_pred HHHHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC-----CCHHHHH
Confidence 555555555443321 122333322222 2344555556666666665 3444444444431 2322333
Q ss_pred HHHHHHHhcC-CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 011323 239 ALMKACANAG-QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 317 (488)
Q Consensus 239 ~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 317 (488)
..+.++.+.+ +...+...+..+.. .++..+....+.++.+.++. .+...+-+..+.+ + .....+.++...
T Consensus 178 ~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~i 248 (280)
T PRK09687 178 WAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGEL 248 (280)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhc
Confidence 3333444332 12334444444432 33455566666666666663 3444444444432 1 123455555666
Q ss_pred CCHHHHHHHHHHHHHCCCCccHHHHHHHHHHH
Q 011323 318 GKVEAAFEILQEAKNQGISVGIISYSSLMGAC 349 (488)
Q Consensus 318 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 349 (488)
|+. +|...+..+.+.. +|..+-...+.++
T Consensus 249 g~~-~a~p~L~~l~~~~--~d~~v~~~a~~a~ 277 (280)
T PRK09687 249 GDK-TLLPVLDTLLYKF--DDNEIITKAIDKL 277 (280)
T ss_pred CCH-hHHHHHHHHHhhC--CChhHHHHHHHHH
Confidence 653 4555555555432 2444444444433
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=90.58 E-value=0.32 Score=26.55 Aligned_cols=16 Identities=25% Similarity=0.245 Sum_probs=5.9
Q ss_pred HHHHHHHHHhhcCCHH
Q 011323 411 TYSILLVACERKDDVE 426 (488)
Q Consensus 411 ~~~~l~~~~~~~g~~~ 426 (488)
.|..+...+...|+++
T Consensus 15 a~~nla~~~~~~g~~~ 30 (34)
T PF13431_consen 15 AYNNLANLYLNQGDYE 30 (34)
T ss_pred HHHHHHHHHHHCcCHH
Confidence 3333333333333333
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=90.55 E-value=0.73 Score=24.90 Aligned_cols=27 Identities=30% Similarity=0.150 Sum_probs=14.3
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 011323 411 TYSILLVACERKDDVEVGLMLLSQAKE 437 (488)
Q Consensus 411 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 437 (488)
+|..+...+...|++++|+..|+++++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 444555555555555555555555554
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.45 E-value=21 Score=35.93 Aligned_cols=138 Identities=14% Similarity=0.110 Sum_probs=78.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCCC---CCHHHHHHHHHHHHhcCChh
Q 011323 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN---PTLSTFNMLMSVCASSKDSE 109 (488)
Q Consensus 33 ~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~ 109 (488)
+.|.+.|++++|.+-|-+.... ..+..+. .-+.....+.+-..+++.+-+ .+...-..|+..|.+.++.+
T Consensus 376 d~Ly~Kgdf~~A~~qYI~tI~~--le~s~Vi-----~kfLdaq~IknLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~ 448 (933)
T KOG2114|consen 376 DYLYGKGDFDEATDQYIETIGF--LEPSEVI-----KKFLDAQRIKNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVE 448 (933)
T ss_pred HHHHhcCCHHHHHHHHHHHccc--CChHHHH-----HHhcCHHHHHHHHHHHHHHHHcccccchhHHHHHHHHHHhcchH
Confidence 4555899999999999876543 2333222 223444555565666655432 33444567888999999888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011323 110 GAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM 188 (488)
Q Consensus 110 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 188 (488)
+-.+..+... .|.. ..-....+..+.+.+-.++|.-+-..... +......++ -..+++++|++.+..+
T Consensus 449 kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~~-----he~vl~ill---e~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 449 KLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATKFKK-----HEWVLDILL---EDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhcc-----CHHHHHHHH---HHhcCHHHHHHHHhcC
Confidence 7766665443 2211 11233455666666666666555444321 333333333 3456677777776655
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.41 E-value=6.6 Score=31.91 Aligned_cols=56 Identities=13% Similarity=0.086 Sum_probs=25.7
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHc
Q 011323 100 SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA 156 (488)
Q Consensus 100 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 156 (488)
.++.+.+.++.|+.--...++.+ +........-..+|.+...+++|++-|+.+.+.
T Consensus 142 aa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeayek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 142 AALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYEKMEKYEEALEDYKKILES 197 (271)
T ss_pred HHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 34444455555554444444433 112222223344455555555555555555544
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=90.39 E-value=7.7 Score=30.78 Aligned_cols=134 Identities=14% Similarity=0.233 Sum_probs=60.1
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 011323 113 QVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN 192 (488)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 192 (488)
+.++.+.+.+++|+...+..++..+.+.|++.....+ ...++-+|.......+-.+.. ....+.++=-+|..+
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~ql----lq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkR- 87 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQL----LQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKR- 87 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH----HhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHH-
Confidence 3344445556666666666666666666665443333 333334444333322222221 222223322222221
Q ss_pred CCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011323 193 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262 (488)
Q Consensus 193 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 262 (488)
=...+..++..+...|++-+|+++.+.... .+......++.+..+.+|...-..+++....
T Consensus 88 ---L~~~~~~iievLL~~g~vl~ALr~ar~~~~------~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 88 ---LGTAYEEIIEVLLSKGQVLEALRYARQYHK------VDSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred ---hhhhHHHHHHHHHhCCCHHHHHHHHHHcCC------cccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 001234455556666666666666655321 1112223445555555555444444444433
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.33 E-value=6.2 Score=34.48 Aligned_cols=47 Identities=15% Similarity=0.167 Sum_probs=23.2
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHH
Q 011323 354 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM 400 (488)
Q Consensus 354 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 400 (488)
+.++++.++..=++.|+-||..+++.++..+.+.+++.+|.++.-.|
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~ 161 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEV 161 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHH
Confidence 33444444444444455555555555555555555555555444443
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.32 E-value=5.8 Score=34.64 Aligned_cols=48 Identities=13% Similarity=0.134 Sum_probs=23.8
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 011323 249 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 296 (488)
Q Consensus 249 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 296 (488)
++++++.++..=.+.|+-||..+++.+++.+.+.+++.+|..+.-.|.
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~ 162 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVM 162 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 344444444444444555555555555555555555555544444433
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=89.58 E-value=5.8 Score=28.14 Aligned_cols=46 Identities=13% Similarity=0.182 Sum_probs=26.0
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 011323 357 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 402 (488)
Q Consensus 357 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 402 (488)
+..+-++.+....+.|++.+..+.+++|.+.+++..|+++++-++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~ 73 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKD 73 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4445555555556666666666666666666666666666666653
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.57 E-value=12 Score=31.92 Aligned_cols=181 Identities=13% Similarity=0.140 Sum_probs=107.6
Q ss_pred hcCCHHHHHHHHHHHHHCCCC--CchHHHHHHHHHHHhhhHHHHHHHHHhhhCC---------CCCHHHHHHHHHHHHhc
Q 011323 37 RQGRISECIDLLEDMERKGLL--DMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---------NPTLSTFNMLMSVCASS 105 (488)
Q Consensus 37 ~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---------~~~~~~~~~l~~~~~~~ 105 (488)
+..++++|+.-|+..++.... .|.--...-++.+..+.+++++....|.++. .-+..+.|+++...+..
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 567999999999998876421 2332333445566667788888777776543 23455778888887777
Q ss_pred CChhHHHHHHHHHHH----c-CCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHc-----CC------CCCHHHHHHHH
Q 011323 106 KDSEGAFQVLRLVQE----A-GLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA-----GI------EPNVHTYGALI 169 (488)
Q Consensus 106 ~~~~~a~~~~~~~~~----~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~------~~~~~~~~~l~ 169 (488)
.+.+-..+.++.-.. . +-+.--.|-..|...|...+.+.+..++++++... |- ..=...|..=|
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEI 198 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEI 198 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHh
Confidence 776665555543221 1 10111223445677777778888888888777542 10 11234566667
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCC-CCCCHhHHHHHHHHH-----HccCCHHHHHH
Q 011323 170 DGCAKAGQVAKAFGAYGIMRSKN-VKPDRVVFNALITAC-----GQSGAVDRAFD 218 (488)
Q Consensus 170 ~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~-----~~~g~~~~a~~ 218 (488)
..|....+-.+...+|++..... -.|.+... .+|+-| .+.|++++|..
T Consensus 199 QmYT~qKnNKkLK~lYeqalhiKSAIPHPlIm-GvIRECGGKMHlreg~fe~AhT 252 (440)
T KOG1464|consen 199 QMYTEQKNNKKLKALYEQALHIKSAIPHPLIM-GVIRECGGKMHLREGEFEKAHT 252 (440)
T ss_pred hhhhhhcccHHHHHHHHHHHHhhccCCchHHH-hHHHHcCCccccccchHHHHHh
Confidence 77777777777777777765331 13443332 334433 34566766554
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=89.17 E-value=1.1 Score=24.10 Aligned_cols=26 Identities=19% Similarity=0.130 Sum_probs=13.5
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHH
Q 011323 412 YSILLVACERKDDVEVGLMLLSQAKE 437 (488)
Q Consensus 412 ~~~l~~~~~~~g~~~~a~~~~~~~~~ 437 (488)
+..+...+...|++++|++.+++..+
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 44455555555555555555555544
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.81 E-value=2.1 Score=35.09 Aligned_cols=71 Identities=14% Similarity=0.180 Sum_probs=54.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCC------CCCHHHHHHHHHH
Q 011323 29 LHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP------NPTLSTFNMLMSV 101 (488)
Q Consensus 29 ~~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~------~~~~~~~~~l~~~ 101 (488)
-.+++.|++.+++.+|+...++-.+.. |.+......+.+++.-.|++++|..-++.+. .+....|..+|..
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkak--Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAK--PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcC--CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 346788999999999999999988887 7787777788888888899999988776543 1334466666554
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=88.74 E-value=0.39 Score=26.19 Aligned_cols=21 Identities=24% Similarity=0.305 Sum_probs=9.9
Q ss_pred CHHHHHHHHHHHHhcCChhHH
Q 011323 91 TLSTFNMLMSVCASSKDSEGA 111 (488)
Q Consensus 91 ~~~~~~~l~~~~~~~~~~~~a 111 (488)
|..+|+.+...+...|++++|
T Consensus 12 n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhh
Confidence 444444444444444444444
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=88.62 E-value=5.2 Score=31.91 Aligned_cols=17 Identities=18% Similarity=0.343 Sum_probs=8.2
Q ss_pred CCCcHHHHHHHHHHHhh
Q 011323 440 VIPNLVMFKCIIGMCSR 456 (488)
Q Consensus 440 ~~~~~~~~~~li~~~~~ 456 (488)
..|+..+|+.-+.+..+
T Consensus 109 ~~P~ne~Y~ksLe~~~k 125 (186)
T PF06552_consen 109 EDPNNELYRKSLEMAAK 125 (186)
T ss_dssp H-TT-HHHHHHHHHHHT
T ss_pred cCCCcHHHHHHHHHHHh
Confidence 44566666655555443
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.53 E-value=13 Score=31.01 Aligned_cols=64 Identities=14% Similarity=0.000 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhh
Q 011323 162 VHTYGALIDGCAKAGQVAKAFGAYGIMRSK-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNA 225 (488)
Q Consensus 162 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 225 (488)
...+......+...+.+..+...+...... ........+......+...++...+.+.+.....
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALA 123 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 344555555555566666665555555431 1123334444444455555555566665555543
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=88.29 E-value=23 Score=33.48 Aligned_cols=161 Identities=9% Similarity=0.109 Sum_probs=65.2
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHH
Q 011323 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 350 (488)
Q Consensus 271 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 350 (488)
...+++..+.++-.+.-++.+..+|..-|- +...+..++++|... ..+.-..++.++.+..+. |.+.-..|+..|.
T Consensus 68 ~l~~~~~~f~~n~k~~~veh~c~~~l~~~e--~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~~yE 143 (711)
T COG1747 68 CLVTLLTIFGDNHKNQIVEHLCTRVLEYGE--SKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELADKYE 143 (711)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHHHHH
Confidence 344444444444444444444444444332 334444445544444 334444444444443221 2222223333332
Q ss_pred hcCCHHHHHHHHHHHHhCCCC-----CCHHHHHHHHHHHHcCCChhHHHHHHHHHHh-CCCCCCHHHHHHHHHHHhhcCC
Q 011323 351 NAKNWQKALELYEHMKSIKLK-----PTVSTMNALITALCDGDQLPKTMEVLSDMKS-LGLCPNTITYSILLVACERKDD 424 (488)
Q Consensus 351 ~~g~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~g~ 424 (488)
+ ++.+.+..+|..+...-++ .-...|..+...- ..+.+..+.+..++.. .|...-...+.-+-.-|....+
T Consensus 144 k-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN 220 (711)
T COG1747 144 K-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENEN 220 (711)
T ss_pred H-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccC
Confidence 2 4444444444444322111 0011222222211 2334444444444432 2222233344444455555555
Q ss_pred HHHHHHHHHHHHHc
Q 011323 425 VEVGLMLLSQAKED 438 (488)
Q Consensus 425 ~~~a~~~~~~~~~~ 438 (488)
+.+|++++..+.+.
T Consensus 221 ~~eai~Ilk~il~~ 234 (711)
T COG1747 221 WTEAIRILKHILEH 234 (711)
T ss_pred HHHHHHHHHHHhhh
Confidence 55555555544443
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=88.05 E-value=1.9 Score=23.22 Aligned_cols=23 Identities=13% Similarity=0.262 Sum_probs=8.6
Q ss_pred HHHHHHHHcCCHhHHHHHHHHHH
Q 011323 132 TLITTCAKSGKVDAMFEVFHEMV 154 (488)
Q Consensus 132 ~l~~~~~~~~~~~~a~~~~~~~~ 154 (488)
.+..++...|++++|++.|++.+
T Consensus 6 ~~g~~~~~~~~~~~A~~~~~~al 28 (34)
T PF00515_consen 6 NLGNAYFQLGDYEEALEYYQRAL 28 (34)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHhCCchHHHHHHHHHH
Confidence 33333333344444444433333
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=87.44 E-value=23 Score=32.42 Aligned_cols=63 Identities=19% Similarity=0.144 Sum_probs=32.3
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---CHHHHHHHHHHHHccCChHHHHHHHHHHHh
Q 011323 235 ITIGALMKACANAGQVDRAREVYKMIHKYNIKG---TPEVYTIAINCCSQTGDWEFACSVYDDMTK 297 (488)
Q Consensus 235 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 297 (488)
.++..+...+.+.|.++.|...+..+...+... .+.+...-+...-..|+..+|...++....
T Consensus 147 ~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 147 ETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345555556666666666666666555432111 223333344444555555555555555544
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=87.18 E-value=26 Score=32.81 Aligned_cols=90 Identities=12% Similarity=0.113 Sum_probs=46.9
Q ss_pred HHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHH
Q 011323 278 CCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK 357 (488)
Q Consensus 278 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 357 (488)
.+...|+++.+...+...... +.....+..+++....+.|+++.|...-..|....++ ++..........-..|-+++
T Consensus 332 i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~ 409 (831)
T PRK15180 332 IFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDK 409 (831)
T ss_pred HHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHH
Confidence 344556666666665544332 1123445566666666666666666666665554433 33333333333334455666
Q ss_pred HHHHHHHHHhCC
Q 011323 358 ALELYEHMKSIK 369 (488)
Q Consensus 358 a~~~~~~~~~~~ 369 (488)
+...|+++...+
T Consensus 410 ~~~~wk~~~~~~ 421 (831)
T PRK15180 410 SYHYWKRVLLLN 421 (831)
T ss_pred HHHHHHHHhccC
Confidence 666666655443
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=87.15 E-value=24 Score=32.31 Aligned_cols=64 Identities=14% Similarity=0.159 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011323 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP---DEVFLSALIDFAGHAGKVEAAFEILQEAKN 332 (488)
Q Consensus 269 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 332 (488)
..++..++..+.+.|.++.|...+..+...+... ++...-.-+...-..|+..+|+..++...+
T Consensus 146 ~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 146 AETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4456667777777777777777777766643111 223333344455566777777777766665
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=86.84 E-value=8.9 Score=27.10 Aligned_cols=86 Identities=10% Similarity=0.081 Sum_probs=51.0
Q ss_pred CHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 011323 40 RISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQ 119 (488)
Q Consensus 40 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 119 (488)
..++|..+-+.+...+ ........+-......+|++++|..+.+....||...|.++... +.|--+++..-+..|.
T Consensus 20 cHqEA~tIAdwL~~~~--~~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla 95 (115)
T TIGR02508 20 CHQEANTIADWLHLKG--ESEEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLA 95 (115)
T ss_pred HHHHHHHHHHHHhcCC--chHHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHH
Confidence 4567777777766554 22333333344445566788888888877777777777666543 3455555555555666
Q ss_pred HcCCCCCHHHH
Q 011323 120 EAGLKADCKLY 130 (488)
Q Consensus 120 ~~~~~~~~~~~ 130 (488)
..| .|....|
T Consensus 96 ~sg-~p~lq~F 105 (115)
T TIGR02508 96 ASG-DPRLQTF 105 (115)
T ss_pred hCC-CHHHHHH
Confidence 555 4444333
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.79 E-value=36 Score=34.07 Aligned_cols=154 Identities=10% Similarity=0.085 Sum_probs=88.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCc--hHHHHHHHHHHHhhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHhcCC
Q 011323 30 HSYNRLIRQGRISECIDLLEDMERKGLLDM--DKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKD 107 (488)
Q Consensus 30 ~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~ 107 (488)
..++-+++.+.+++|++........- +. ..-....++.-+...|++++|-...-.+...+...|..-+..+...++
T Consensus 361 Dhi~Wll~~k~yeeAl~~~k~~~~~~--~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~ 438 (846)
T KOG2066|consen 361 DHIDWLLEKKKYEEALDAAKASIGNE--ERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQ 438 (846)
T ss_pred hhHHHHHHhhHHHHHHHHHHhccCCc--cccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccc
Confidence 35667889999999999887654332 21 222333344444566889999888888887788888877777777766
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHH---------cCC-------CCCHHHHHHHHHH
Q 011323 108 SEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN---------AGI-------EPNVHTYGALIDG 171 (488)
Q Consensus 108 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---------~~~-------~~~~~~~~~l~~~ 171 (488)
......+ +.......+...|..++..+.. .+...-.++...... ... .-+...-..|+..
T Consensus 439 l~~Ia~~---lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~La~L 514 (846)
T KOG2066|consen 439 LTDIAPY---LPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSESTALLEVLAHL 514 (846)
T ss_pred cchhhcc---CCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhccchhHHHHHHHH
Confidence 6543332 2221112345567777666655 222222222111100 000 1122223347777
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 011323 172 CAKAGQVAKAFGAYGIMR 189 (488)
Q Consensus 172 ~~~~~~~~~a~~~~~~~~ 189 (488)
|...+++..|++++-..+
T Consensus 515 Yl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 515 YLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred HHHccChHHHHHHHHhcc
Confidence 777888888887776655
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=86.52 E-value=2.5 Score=22.56 Aligned_cols=19 Identities=16% Similarity=0.300 Sum_probs=6.9
Q ss_pred HHHHHcCCHhHHHHHHHHH
Q 011323 135 TTCAKSGKVDAMFEVFHEM 153 (488)
Q Consensus 135 ~~~~~~~~~~~a~~~~~~~ 153 (488)
..+...|++++|++.|++.
T Consensus 9 ~~~~~~~~~~~A~~~~~~a 27 (34)
T PF07719_consen 9 QAYYQLGNYEEAIEYFEKA 27 (34)
T ss_dssp HHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHH
Confidence 3333333333333333333
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=86.40 E-value=8.1 Score=31.58 Aligned_cols=42 Identities=10% Similarity=0.105 Sum_probs=21.8
Q ss_pred cCCHHHHHHHHHHHHhc---CCCCCHHHHHHHHHHHHccCChHHH
Q 011323 247 AGQVDRAREVYKMIHKY---NIKGTPEVYTIAINCCSQTGDWEFA 288 (488)
Q Consensus 247 ~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a 288 (488)
..+.+++..++-...+. +-.+++..+..|+..+.+.|+++.|
T Consensus 153 krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 153 KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 44555555555544332 1134555566666666666655554
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=86.39 E-value=30 Score=32.77 Aligned_cols=182 Identities=12% Similarity=0.088 Sum_probs=121.1
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 011323 90 PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALI 169 (488)
Q Consensus 90 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 169 (488)
.|..+.-+++..+..+....-...+-.+|..-| .+-..|..++++|... ..+.-..+|+++.+..+. |+..-..|.
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa 139 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELA 139 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHH
Confidence 466677888888888888888888888888764 4667888899999888 567888999988887432 444444455
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCC-----CHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHH
Q 011323 170 DGCAKAGQVAKAFGAYGIMRSKNVKP-----DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 244 (488)
Q Consensus 170 ~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 244 (488)
..|- .++.+.+...|.+...+-++. -...|..+... -..+.+....+...+... .+...-...+.-+-.-|
T Consensus 140 ~~yE-kik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~-lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 140 DKYE-KIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTK-LGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHH-HhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHh-hccchHHHHHHHHHHHh
Confidence 5444 488888888888876543221 12244444432 135567777777666554 23333344555566677
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 011323 245 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCS 280 (488)
Q Consensus 245 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 280 (488)
....++.+|++++..+.+.+ ..|......++..+.
T Consensus 216 s~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~lR 250 (711)
T COG1747 216 SENENWTEAIRILKHILEHD-EKDVWARKEIIENLR 250 (711)
T ss_pred ccccCHHHHHHHHHHHhhhc-chhhhHHHHHHHHHH
Confidence 88889999999999888776 445555555554433
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.98 E-value=7 Score=32.24 Aligned_cols=77 Identities=16% Similarity=0.163 Sum_probs=55.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhC--CCCCCHHHHHHHHHH
Q 011323 341 SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL--GLCPNTITYSILLVA 418 (488)
Q Consensus 341 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~p~~~~~~~l~~~ 418 (488)
+.+..++.+.+.+.+.+++...+.-.+.+ +-|..+-..++..|+-.|++++|..-++-.-+. ...+...+|..++.+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 34556677888899999999888777664 445666677889999999999998777765442 133446677777654
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=85.93 E-value=2.3 Score=24.11 Aligned_cols=28 Identities=29% Similarity=0.209 Sum_probs=20.0
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 011323 410 ITYSILLVACERKDDVEVGLMLLSQAKE 437 (488)
Q Consensus 410 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 437 (488)
.+++.+...|...|++++|..+++++.+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4567777778888888888888777654
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=85.69 E-value=15 Score=28.44 Aligned_cols=52 Identities=17% Similarity=0.132 Sum_probs=34.2
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHHcCCHhHHHHHHHHHHHc
Q 011323 103 ASSKDSEGAFQVLRLVQEAGLKADCK-LYTTLITTCAKSGKVDAMFEVFHEMVNA 156 (488)
Q Consensus 103 ~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 156 (488)
...++.+++..+++.|.-. .|+.. .-..-...+...|++.+|..+|+++.+.
T Consensus 21 L~~~d~~D~e~lLdALrvL--rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVL--RPNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred HhcCCHHHHHHHHHHHHHh--CCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 3467888888888877653 34322 2222234456788888888888888765
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.65 E-value=16 Score=29.84 Aligned_cols=93 Identities=18% Similarity=0.160 Sum_probs=53.2
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCc----cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC
Q 011323 314 AGHAGKVEAAFEILQEAKNQGISV----GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389 (488)
Q Consensus 314 ~~~~g~~~~a~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 389 (488)
+...|++++|..-|.......... ....|..-..++.+.+.++.|+.-....++.+ +-......--..+|.+...
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeayek~ek 183 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYEKMEK 183 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHHhhhh
Confidence 455677777777777666643211 12334444556667777777777776666654 1112222223446667777
Q ss_pred hhHHHHHHHHHHhCCCCCCH
Q 011323 390 LPKTMEVLSDMKSLGLCPNT 409 (488)
Q Consensus 390 ~~~a~~~~~~~~~~~~~p~~ 409 (488)
+++|+.-|+.+.+. .|..
T Consensus 184 ~eealeDyKki~E~--dPs~ 201 (271)
T KOG4234|consen 184 YEEALEDYKKILES--DPSR 201 (271)
T ss_pred HHHHHHHHHHHHHh--Ccch
Confidence 77777777777763 4443
|
|
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=85.62 E-value=2.5 Score=24.74 Aligned_cols=23 Identities=30% Similarity=0.200 Sum_probs=12.1
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHH
Q 011323 415 LLVACERKDDVEVGLMLLSQAKE 437 (488)
Q Consensus 415 l~~~~~~~g~~~~a~~~~~~~~~ 437 (488)
+..+|...|+.+.|.++++++..
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 44455555555555555555553
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=85.56 E-value=0.38 Score=37.33 Aligned_cols=84 Identities=11% Similarity=0.071 Sum_probs=45.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC
Q 011323 310 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389 (488)
Q Consensus 310 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 389 (488)
++..+.+.+.+.....+++.+...+...+....+.++..|++.++.+...++++.. +..-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcch
Confidence 45555556666666666666665554455666666666666666555555555411 11222345555556666
Q ss_pred hhHHHHHHHHH
Q 011323 390 LPKTMEVLSDM 400 (488)
Q Consensus 390 ~~~a~~~~~~~ 400 (488)
+++|.-++.++
T Consensus 86 ~~~a~~Ly~~~ 96 (143)
T PF00637_consen 86 YEEAVYLYSKL 96 (143)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHHHc
Confidence 66666555543
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=85.40 E-value=24 Score=30.76 Aligned_cols=116 Identities=15% Similarity=0.158 Sum_probs=64.4
Q ss_pred CCHHHHHHHHHHHHh-c-CCHHHHHHHHHHHHHC-CCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHH
Q 011323 302 PDEVFLSALIDFAGH-A-GKVEAAFEILQEAKNQ-GISVGIISYSSLMGACSNAKNWQKALELYEHMKSI-KLKPTVSTM 377 (488)
Q Consensus 302 ~~~~~~~~l~~~~~~-~-g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~ 377 (488)
-|..+...++..... . .....-.++.+.+... +..++..+...++..++..+++.+-.++++..... +...|...|
T Consensus 162 ~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW 241 (292)
T PF13929_consen 162 FDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPW 241 (292)
T ss_pred eChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchH
Confidence 355666666655543 1 1222333333333322 23556666677777777777777777777665543 445566777
Q ss_pred HHHHHHHHcCCChhHHHHHHHH-----HHhCCCCCCHHHHHHHHH
Q 011323 378 NALITALCDGDQLPKTMEVLSD-----MKSLGLCPNTITYSILLV 417 (488)
Q Consensus 378 ~~l~~~~~~~~~~~~a~~~~~~-----~~~~~~~p~~~~~~~l~~ 417 (488)
..+++...+.|+..-..++..+ +.+.|+..+...-..+-.
T Consensus 242 ~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~ 286 (292)
T PF13929_consen 242 AEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSE 286 (292)
T ss_pred HHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHH
Confidence 7777777777776655555544 234445544444444433
|
|
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=85.40 E-value=2 Score=25.07 Aligned_cols=28 Identities=25% Similarity=0.423 Sum_probs=24.4
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 011323 28 QLHSYNRLIRQGRISECIDLLEDMERKG 55 (488)
Q Consensus 28 ~~~~~~~l~~~g~~~~A~~~~~~~~~~~ 55 (488)
.+.....++..|+.+.|.++++++...+
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 3567788999999999999999999765
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=84.95 E-value=2.8 Score=23.71 Aligned_cols=26 Identities=12% Similarity=0.119 Sum_probs=12.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011323 164 TYGALIDGCAKAGQVAKAFGAYGIMR 189 (488)
Q Consensus 164 ~~~~l~~~~~~~~~~~~a~~~~~~~~ 189 (488)
+++.+...|...|++++|..++++..
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 44445555555555555555554443
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=84.94 E-value=25 Score=30.59 Aligned_cols=72 Identities=8% Similarity=0.017 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH-----cCCCCcHHHH
Q 011323 375 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE-----DGVIPNLVMF 447 (488)
Q Consensus 375 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~ 447 (488)
.+++.....|..+|.+.+|.++-++.+... +.+...+..++..+...|+--.+.+.++++.+ .|+..+...+
T Consensus 280 kllgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsie 356 (361)
T COG3947 280 KLLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIE 356 (361)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHH
Confidence 345566678889999999999999988753 56778888999999999998888887777653 2666665543
|
|
| >PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins | Back alignment and domain information |
|---|
Probab=84.64 E-value=18 Score=31.29 Aligned_cols=87 Identities=15% Similarity=0.091 Sum_probs=57.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----
Q 011323 99 MSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAK---- 174 (488)
Q Consensus 99 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 174 (488)
|.+++..+++.+++...-+--+.--+........-|-.|++.+.+..+.++-...++..-..+...|.+++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 5778888888888776544432211223344555566678888888888888877765333444557777666654
Q ss_pred -cCCHHHHHHHH
Q 011323 175 -AGQVAKAFGAY 185 (488)
Q Consensus 175 -~~~~~~a~~~~ 185 (488)
.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 68888887776
|
Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane |
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=84.64 E-value=21 Score=29.31 Aligned_cols=72 Identities=8% Similarity=-0.022 Sum_probs=44.3
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHhHHHHHHHHHHccCCHHHH
Q 011323 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK---NVKPDRVVFNALITACGQSGAVDRA 216 (488)
Q Consensus 144 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~ll~~~~~~g~~~~a 216 (488)
+.|.+.|-.+...+.--++.....|...|. ..+.++++.++-...+. +-.+|+..+.+|+..+.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 566666666666554445555555555554 55677777776666543 2245667777777777777777665
|
|
| >PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins | Back alignment and domain information |
|---|
Probab=84.43 E-value=17 Score=31.38 Aligned_cols=87 Identities=11% Similarity=0.002 Sum_probs=52.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----
Q 011323 241 MKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH---- 316 (488)
Q Consensus 241 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 316 (488)
|++++..+++.+++.+.-...+..-+..+.+...-|-.|.+.+.+..+.++-..-.+..-+-+...|.++++.|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 5666777777777666554443322334456666666677777777777777666554322233446666665543
Q ss_pred -cCCHHHHHHHH
Q 011323 317 -AGKVEAAFEIL 327 (488)
Q Consensus 317 -~g~~~~a~~~~ 327 (488)
.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 47777777665
|
Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane |
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=84.08 E-value=46 Score=32.87 Aligned_cols=181 Identities=14% Similarity=0.103 Sum_probs=89.3
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHH---HHHcCCHhHHHHHHHHHHH-------cCCCCCHHHHHHHHHHHHhcC-
Q 011323 108 SEGAFQVLRLVQEAGLKADCKLYTTLITT---CAKSGKVDAMFEVFHEMVN-------AGIEPNVHTYGALIDGCAKAG- 176 (488)
Q Consensus 108 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~- 176 (488)
...|.+.++.....|. .........+.. ++...+.+.|...|+...+ .| ......-+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~-~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~ 303 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGH-SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLG 303 (552)
T ss_pred hhHHHHHHHHHHhhcc-hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCC
Confidence 3567777777776652 122222222222 3355677888888877765 33 2234445555555432
Q ss_pred ----CHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHc-cCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHH----hc
Q 011323 177 ----QVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ-SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA----NA 247 (488)
Q Consensus 177 ----~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~ 247 (488)
+.+.|+.+|.+.-+.| .|+....-..+..... ..+...|.++|......+ .++ .+-.+..+|. ..
T Consensus 304 ~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G---~~~--A~~~la~~y~~G~gv~ 377 (552)
T KOG1550|consen 304 VEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG---HIL--AIYRLALCYELGLGVE 377 (552)
T ss_pred CccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC---ChH--HHHHHHHHHHhCCCcC
Confidence 5566777777777666 3444443333332222 234567777777665532 111 2111221111 22
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCC
Q 011323 248 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGV 300 (488)
Q Consensus 248 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 300 (488)
.+...|..++++.-..+ .+...--...+..+.. +.++.+.-.+..+.+.|.
T Consensus 378 r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~ 428 (552)
T KOG1550|consen 378 RNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGY 428 (552)
T ss_pred CCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhh
Confidence 35666777777666666 3322222222233333 555555555555554443
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=83.18 E-value=2.4 Score=22.42 Aligned_cols=21 Identities=24% Similarity=0.422 Sum_probs=9.0
Q ss_pred HHHHHcCCHhHHHHHHHHHHH
Q 011323 135 TTCAKSGKVDAMFEVFHEMVN 155 (488)
Q Consensus 135 ~~~~~~~~~~~a~~~~~~~~~ 155 (488)
.++.+.|+.++|.+.|+++.+
T Consensus 8 ~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 8 RCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHH
Confidence 333344444444444444443
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=82.60 E-value=14 Score=25.94 Aligned_cols=45 Identities=13% Similarity=0.177 Sum_probs=26.0
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011323 287 FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 331 (488)
Q Consensus 287 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 331 (488)
++.+-++.+....+.|++....+.+.+|.+.+++..|..+|+-++
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 444455555555555666666666666666666666666665554
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=81.90 E-value=4.9 Score=21.47 Aligned_cols=27 Identities=30% Similarity=0.234 Sum_probs=20.1
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 011323 411 TYSILLVACERKDDVEVGLMLLSQAKE 437 (488)
Q Consensus 411 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 437 (488)
+|..+...+...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 566677777778888888888877765
|
... |
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=81.81 E-value=5.9 Score=27.66 Aligned_cols=36 Identities=19% Similarity=0.354 Sum_probs=26.1
Q ss_pred cccCCCchhHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 011323 20 NYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKG 55 (488)
Q Consensus 20 ~~~~~~~~~~~~~~~l~~~g~~~~A~~~~~~~~~~~ 55 (488)
..|.+..........++..|++++|++.+-++.+.+
T Consensus 17 ~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~d 52 (90)
T PF14561_consen 17 ANPDDLDARYALADALLAAGDYEEALDQLLELVRRD 52 (90)
T ss_dssp HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-
T ss_pred cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 456777777777788888888888888888888775
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=81.59 E-value=0.61 Score=36.16 Aligned_cols=53 Identities=15% Similarity=0.164 Sum_probs=23.4
Q ss_pred HHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 011323 134 ITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYG 186 (488)
Q Consensus 134 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 186 (488)
+..+.+.+.+.....+++.+...+...+....+.++..|++.++.++..++++
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 33334444444444444444443333344444555555555544444444444
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=80.79 E-value=6.5 Score=26.38 Aligned_cols=47 Identities=6% Similarity=-0.076 Sum_probs=31.6
Q ss_pred cCCChhHHHHHHHHHHhCCCCC-C-HHHHHHHHHHHhhcCCHHHHHHHH
Q 011323 386 DGDQLPKTMEVLSDMKSLGLCP-N-TITYSILLVACERKDDVEVGLMLL 432 (488)
Q Consensus 386 ~~~~~~~a~~~~~~~~~~~~~p-~-~~~~~~l~~~~~~~g~~~~a~~~~ 432 (488)
...+.++|+..|+..++.-..| + ..++..++.+++..|++.+++++-
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667778888888776542222 2 345667778888888887776654
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 81.0 bits (198), Expect = 3e-16
Identities = 26/209 (12%), Positives = 56/209 (26%), Gaps = 2/209 (0%)
Query: 160 PNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDV 219
P L+ + G + + A C + + A +
Sbjct: 90 PWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHL 149
Query: 220 LAEM-NAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINC 278
L A+M A G V M+ + Y A+ C
Sbjct: 150 LVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQC 209
Query: 279 CSQTGDWEFACSVY-DDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV 337
+ + M+++G+ +F + L+ A ++A ++
Sbjct: 210 MGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLP 269
Query: 338 GIISYSSLMGACSNAKNWQKALELYEHMK 366
++ S L+ +L+ +K
Sbjct: 270 PPVNTSKLLRDVYAKDGRVSYPKLHLPLK 298
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 76.8 bits (187), Expect = 7e-15
Identities = 26/215 (12%), Positives = 67/215 (31%), Gaps = 4/215 (1%)
Query: 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 328
E + + + ++ + + L A ++ A +L
Sbjct: 92 EEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLV 151
Query: 329 EAKNQ---GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 385
Q + + Y+++M + +++ + + +K L P + + A + +
Sbjct: 152 VHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMG 211
Query: 386 DGDQLPKTME-VLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL 444
DQ T+E L M GL + ++LL +R ++ + +P
Sbjct: 212 RQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPP 271
Query: 445 VMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIE 479
V ++ + + H+ +
Sbjct: 272 VNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEK 306
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 76.4 bits (186), Expect = 7e-15
Identities = 25/189 (13%), Positives = 55/189 (29%), Gaps = 6/189 (3%)
Query: 128 KLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKA---FGA 184
+ L+ +D + A + A C Q+ A
Sbjct: 93 EQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVV 152
Query: 185 YGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 244
+ R K ++NA++ + GA VL + + PD ++ A ++
Sbjct: 153 HHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAG--LTPDLLSYAAALQCM 210
Query: 245 ANAGQVDRA-REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 303
Q + + + +K + ++ + + V + +P
Sbjct: 211 GRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPP 270
Query: 304 EVFLSALID 312
V S L+
Sbjct: 271 PVNTSKLLR 279
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 76.4 bits (186), Expect = 8e-15
Identities = 21/169 (12%), Positives = 51/169 (30%), Gaps = 6/169 (3%)
Query: 72 KSQKAIKEAFRFFKLV--PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQE---AGLKAD 126
K +++A + C + A +L +
Sbjct: 105 KLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLT 164
Query: 127 CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAY- 185
+Y ++ A+ G + V + +AG+ P++ +Y A + + Q A
Sbjct: 165 LDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCL 224
Query: 186 GIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH 234
M + +K + L++ ++ + V + P +
Sbjct: 225 EQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVN 273
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 74.5 bits (181), Expect = 3e-14
Identities = 25/184 (13%), Positives = 61/184 (33%), Gaps = 4/184 (2%)
Query: 230 VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG---TPEVYTIAINCCSQTGDWE 286
+ + A K C Q+ A + + H K T ++Y + ++ G ++
Sbjct: 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFK 182
Query: 287 FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK-VEAAFEILQEAKNQGISVGIISYSSL 345
V + G+ PD + +A + G + L++ +G+ + + + L
Sbjct: 183 ELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVL 242
Query: 346 MGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL 405
+ A + ++ P + L+ + D ++ +K+L
Sbjct: 243 LSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQC 302
Query: 406 CPNT 409
Sbjct: 303 LFEK 306
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 67.2 bits (163), Expect = 7e-12
Identities = 73/557 (13%), Positives = 152/557 (27%), Gaps = 174/557 (31%)
Query: 18 HANYAH---DVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQ 74
H ++ H + E + Y D+L E + + D +V
Sbjct: 1 HHHHHHMDFETGEHQYQYK------------DILSVFEDAFVDNFD------CKDVQDMP 42
Query: 75 KAI--KEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCK-LYT 131
K+I KE + + T + ++ + ++ V + V+E L+ + K L +
Sbjct: 43 KSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEE-----MVQKFVEEV-LRINYKFLMS 96
Query: 132 TLITTCAKSGKVDAMFEVFHEMVNAGI--------------------------EPNVHTY 165
+ T + + M+ + + NV
Sbjct: 97 PIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLID 156
Query: 166 GALIDGCAK---AGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAE 222
G L G K A V ++ + + ++ + + + VL
Sbjct: 157 GVL--GSGKTWVALDVCLSY------KVQCKMDFKIFW---LNL----KNCNSPETVLEM 201
Query: 223 MNAEVHPVDPDHITIGALMKAC-ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ 281
+ ++ +DP+ + + Y + +N +
Sbjct: 202 LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY-----ENCLLVLLNVQNA 256
Query: 282 TGDWE---FAC---------SVYD------------DMTKKGVIPDEVFLSALIDFAGHA 317
W +C V D D + PDEV S L+ +
Sbjct: 257 K-AWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV-KSLLLKYLDC- 313
Query: 318 GKVEAAFEILQEAKNQGISVGIISYSSLMGA-CSNAKN-WQKALELYEHMKSIKLKPTV- 374
++ +E + + S++ + W ++H+ KL +
Sbjct: 314 ----RPQDLPREVL--TTNPRRL---SIIAESIRDGLATWDN----WKHVNCDKLTTIIE 360
Query: 375 STMNAL--------------------ITA--LC---DGDQLPKTMEVLSDMKSLGLC--- 406
S++N L I L M V++ + L
Sbjct: 361 SSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQ 420
Query: 407 PNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNE 466
P T SI + L + K + + + I+ Y +T +
Sbjct: 421 PKESTISIP------------SIYLELKVKLEN---EYALHRSIV----DHYNIPKTFDS 461
Query: 467 HVLSFNSGRPQIENKWY 483
L P ++ +Y
Sbjct: 462 DDLI----PPYLDQYFY 474
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 54.5 bits (130), Expect = 6e-08
Identities = 60/446 (13%), Positives = 115/446 (25%), Gaps = 151/446 (33%)
Query: 16 GKH---ANYAHDVSEQLHSYNRL--IRQGRISECIDLLEDMERKGLLDMDKVYHAR---F 67
GK + Q ++ + + +LE +++ L +D + +R
Sbjct: 162 GKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL-LYQIDPNWTSRSDHS 220
Query: 68 FNVCKSQKAIKEAFR-FFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAG-LKA 125
N+ +I+ R K P N L+ VL VQ A A
Sbjct: 221 SNIKLRIHSIQAELRRLLKSKPYE-----NCLL--------------VLLNVQNAKAWNA 261
Query: 126 ---DCKLYTTLITTCAKS----GKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQV 178
CK L+TT K + + + + P+ +
Sbjct: 262 FNLSCK---ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD-----------EVKSLL 307
Query: 179 AKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT-I 237
K + +P L EV +P ++ I
Sbjct: 308 LKYL---------DCRPQD----------------------LPR---EVLTTNPRRLSII 333
Query: 238 GALMKACANAGQVDRAR-EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF-----ACSV 291
++ A + +K N + ++N E+ SV
Sbjct: 334 AESIR-------DGLATWDNWK---HVNCDKLTTIIESSLNVLEPA---EYRKMFDRLSV 380
Query: 292 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 351
+ IP + LS + ++ + SL
Sbjct: 381 FPPSAH---IPTIL-LSLIWF----DVIKSDVMVVVNKLHK----------YSL------ 416
Query: 352 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 411
+ K + ++LK + AL ++ D +PK + +
Sbjct: 417 VEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPK-----------TFDSDDLI 465
Query: 412 --------YSIL---LVACERKDDVE 426
YS + L E + +
Sbjct: 466 PPYLDQYFYSHIGHHLKNIEHPERMT 491
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 47.2 bits (111), Expect = 1e-05
Identities = 63/403 (15%), Positives = 120/403 (29%), Gaps = 141/403 (34%)
Query: 23 HDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARF---FNV-CK------ 72
H + +L RL++ C LL + V +A+ FN+ CK
Sbjct: 228 HSIQAEL---RRLLKSKPYENC-----------LLVLLNVQNAKAWNAFNLSCKILLTTR 273
Query: 73 ----------------SQKAIKEAF---------------RFFKLVPNPTLSTFNMLMSV 101
S R L P L+T +S+
Sbjct: 274 FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL-PREVLTTNPRRLSI 332
Query: 102 CASS-KDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD---AMFE---VFHEMV 154
A S +D + + V +C TT+I + + MF+ VF
Sbjct: 333 IAESIRDGLATWDNWKHV-------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSA 385
Query: 155 NAGIEPNV----------HTYGALIDGCAKAGQVAK-----AFGAYGIMRSKNVKPD--R 197
+ I + +++ K V K I VK +
Sbjct: 386 H--IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEY 443
Query: 198 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD-----HITIGALMKACANAGQVDR 252
+ +++ + + FD + ++ P D HI G +K + ++
Sbjct: 444 ALHRSIV----DHYNIPKTFD-----SDDLIPPYLDQYFYSHI--GHHLKNIEHPERMTL 492
Query: 253 AREVY--------KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK-KGVIPD 303
R V+ K+ H + A N + + K I D
Sbjct: 493 FRMVFLDFRFLEQKIRHD----------STAWNASGSILN------TLQQLKFYKPYICD 536
Query: 304 -----EVFLSALIDFAGHAGK--VEAAF-EILQEA---KNQGI 335
E ++A++DF + + + + ++L+ A +++ I
Sbjct: 537 NDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAI 579
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Length = 530 | Back alignment and structure |
|---|
Score = 43.3 bits (101), Expect = 1e-04
Identities = 18/158 (11%), Positives = 51/158 (32%), Gaps = 6/158 (3%)
Query: 176 GQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 235
+ K Y + + +V+ + ++ + + + E
Sbjct: 335 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAR-EDARTRHHVY 393
Query: 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 295
ALM+ + A +++++ K PE I+ S + +++ +
Sbjct: 394 VTAALMEYYCS-KDKSVAFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERV 451
Query: 296 TKKGVIPDEV---FLSALIDFAGHAGKVEAAFEILQEA 330
G +P E + + F + G + + ++ +
Sbjct: 452 LTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 489
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Length = 530 | Back alignment and structure |
|---|
Score = 42.2 bits (98), Expect = 3e-04
Identities = 17/132 (12%), Positives = 46/132 (34%), Gaps = 8/132 (6%)
Query: 248 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFL 307
+ ++ +Y + VY + + + ++ + V++
Sbjct: 335 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYV 394
Query: 308 -SALIDFAGHAGKVEAAFEILQEAKNQGISVG--IISYSSLMGACSNAKNWQKALELYEH 364
+AL+++ + AF+I + + + +++Y + S+ L+E
Sbjct: 395 TAALMEYY-CSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYL---SHLNEDNNTRVLFER 450
Query: 365 -MKSIKLKPTVS 375
+ S L P S
Sbjct: 451 VLTSGSLPPEKS 462
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 488 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.97 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.94 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.94 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.94 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.94 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.93 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.91 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.91 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.91 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.88 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.88 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.87 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.87 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.86 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.86 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.84 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.83 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.82 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.81 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.81 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.8 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.8 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.8 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.8 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.8 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.78 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.78 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.76 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.76 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.75 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.74 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.73 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.69 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.69 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.69 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.69 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.69 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.65 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.64 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.63 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.63 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.63 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.63 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.62 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.62 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.62 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.62 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.62 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.61 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.61 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.61 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.61 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.58 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.54 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.54 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.53 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.53 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.53 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.52 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.52 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.52 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.5 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.5 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.5 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.48 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.46 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.46 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.43 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.43 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.41 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.4 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.39 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.37 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.37 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.37 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.35 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.32 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.32 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.29 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.25 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.21 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.19 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.15 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.15 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.13 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.12 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.12 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.12 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.12 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.12 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.11 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.11 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.1 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.09 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.09 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.06 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.05 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.02 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.0 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.97 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.97 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.97 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.96 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.96 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.96 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.95 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.95 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.94 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.93 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.88 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.88 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.87 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.81 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.76 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.74 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.73 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.72 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.72 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.71 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.71 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.7 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.7 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.69 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.67 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.67 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.67 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.66 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.65 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.65 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.65 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.64 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.64 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.63 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.61 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.61 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.6 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.6 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.59 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.59 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.58 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.55 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.54 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.54 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.53 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.53 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.52 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.52 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.51 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.49 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.48 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.47 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.47 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.44 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.44 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.43 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.41 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.41 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.41 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.4 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.37 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.37 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.34 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.34 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.34 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.31 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.31 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.28 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.28 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.27 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.21 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.2 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.14 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.13 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.13 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.12 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.11 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.09 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.08 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.07 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.05 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.05 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.0 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.98 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.96 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.93 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.86 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.85 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.83 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.79 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.79 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.78 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.78 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.78 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.75 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.69 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.66 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.65 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.62 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.6 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.59 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.59 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.42 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.39 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.27 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 97.2 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.02 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.93 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.89 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.58 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.58 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.55 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.54 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.51 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.49 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.41 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.39 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 96.36 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.2 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.16 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 95.83 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.81 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 95.74 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.74 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 95.6 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.6 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 95.22 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 94.9 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 94.75 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 94.35 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 94.1 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 92.97 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 92.49 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 92.34 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 92.23 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 91.81 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 91.79 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 91.77 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 91.63 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 91.47 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 91.03 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 90.91 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 90.84 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 90.52 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 90.15 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 89.37 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 89.14 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 89.13 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 88.87 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 88.22 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 87.01 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 85.71 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 84.74 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 84.62 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 84.61 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 84.11 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 82.92 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 82.11 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 81.87 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 81.52 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-38 Score=311.37 Aligned_cols=431 Identities=9% Similarity=-0.036 Sum_probs=374.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhC--CCCCHHHHHHHHHHHHhcCChhH
Q 011323 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV--PNPTLSTFNMLMSVCASSKDSEG 110 (488)
Q Consensus 33 ~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~ 110 (488)
..+.++|++++|+.+|+++.... |++ .....++..+...|++++|+.+|+++ .+++..+++.++..|.+.|++++
T Consensus 92 ~~~~~~g~~~~A~~~~~~~~~~~--p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 168 (597)
T 2xpi_A 92 HDALMQQQYKCAAFVGEKVLDIT--GNP-NDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQG 168 (597)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH--CCH-HHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHccCchHHHHHHHHHHhhC--CCc-hHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhHHH
Confidence 44457999999999999998765 444 55567889999999999999999998 46889999999999999999999
Q ss_pred HHHHHHHHH-Hc--------------CCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHH-------
Q 011323 111 AFQVLRLVQ-EA--------------GLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGAL------- 168 (488)
Q Consensus 111 a~~~~~~~~-~~--------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l------- 168 (488)
|+++|+++. .. +.+++..+|+.++.+|.+.|++++|.++|+++.+.+ +.+...+..+
T Consensus 169 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~ 247 (597)
T 2xpi_A 169 ALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD-AKCYEAFDQLVSNHLLT 247 (597)
T ss_dssp HHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCSC
T ss_pred HHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-chhhHHHHHHHHhhccc
Confidence 999998532 11 223458899999999999999999999999999874 2234443333
Q ss_pred -------------------------------HHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHH
Q 011323 169 -------------------------------IDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAF 217 (488)
Q Consensus 169 -------------------------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 217 (488)
+..|.+.|++++|.++|+++.+. +++..+++.++.+|.+.|++++|.
T Consensus 248 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~ 325 (597)
T 2xpi_A 248 ADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVL 325 (597)
T ss_dssp HHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHH
T ss_pred chhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHH
Confidence 44566788999999999999866 589999999999999999999999
Q ss_pred HHHHHHhhCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHh
Q 011323 218 DVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 297 (488)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 297 (488)
++|+++.... +.+..++..++.++.+.|++++|..+++.+.+.. +.+..+++.++..|.+.|++++|.++|+++.+
T Consensus 326 ~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 401 (597)
T 2xpi_A 326 AITTKILEID---PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSST 401 (597)
T ss_dssp HHHHHHHHHC---TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcC---cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 9999998752 3366789999999999999999999999998765 66889999999999999999999999999988
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 011323 298 KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 377 (488)
Q Consensus 298 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 377 (488)
.... +..++..++..|.+.|++++|.++|+++.+.+ +.+..+++.++.+|.+.|++++|.++|+++.+.. +.+..+|
T Consensus 402 ~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~ 478 (597)
T 2xpi_A 402 MDPQ-FGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLL 478 (597)
T ss_dssp HCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHH
T ss_pred hCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHH
Confidence 6443 78899999999999999999999999999875 4578899999999999999999999999998765 5678999
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHhC----CCCCC--HHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Q 011323 378 NALITALCDGDQLPKTMEVLSDMKSL----GLCPN--TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451 (488)
Q Consensus 378 ~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 451 (488)
+.++..|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.++++++.+.+ +.+..+|..+.
T Consensus 479 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~ 557 (597)
T 2xpi_A 479 NELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIA 557 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHH
Confidence 99999999999999999999999765 66787 7899999999999999999999999999865 33778888888
Q ss_pred HHHhh--cHHHHHHHHHHhhhccCCCCc
Q 011323 452 GMCSR--RYEKARTLNEHVLSFNSGRPQ 477 (488)
Q Consensus 452 ~~~~~--~~~~a~~~~~~~~~~~~~~~~ 477 (488)
.++.+ ++++|.+.++++...+|.++.
T Consensus 558 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 585 (597)
T 2xpi_A 558 LVYLHKKIPGLAITHLHESLAISPNEIM 585 (597)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCChH
Confidence 88876 899999999999988877654
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-35 Score=291.58 Aligned_cols=397 Identities=10% Similarity=0.006 Sum_probs=347.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCCCC------------------
Q 011323 29 LHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNP------------------ 90 (488)
Q Consensus 29 ~~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------------------ 90 (488)
......+.+.|++++|+++|+.+... +.+......++..+.+.|++++|+++|++..+.
T Consensus 121 ~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (597)
T 2xpi_A 121 FWLAQVYCCTGDYARAKCLLTKEDLY---NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIK 197 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHTCGG---GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCC
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHhcc---ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccc
Confidence 34455666899999999999988654 456677888899999999999999999965443
Q ss_pred -CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHH------------------------------------
Q 011323 91 -TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL------------------------------------ 133 (488)
Q Consensus 91 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l------------------------------------ 133 (488)
+..+|+.++.+|.+.|++++|+++|++|.+.+ +.+...+..+
T Consensus 198 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 276 (597)
T 2xpi_A 198 LEASMCYLRGQVYTNLSNFDRAKECYKEALMVD-AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYM 276 (597)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHH
Confidence 47899999999999999999999999999875 3344443333
Q ss_pred --HHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccC
Q 011323 134 --ITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211 (488)
Q Consensus 134 --~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 211 (488)
+..|.+.|++++|.++|+++.+. +++..+++.++.+|.+.|++++|.++|+++...+ +.+..++..++.++.+.|
T Consensus 277 ~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g 353 (597)
T 2xpi_A 277 LKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESG 353 (597)
T ss_dssp TTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHT
T ss_pred HHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhC
Confidence 44566788999999999998866 5899999999999999999999999999999775 457889999999999999
Q ss_pred CHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 011323 212 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 291 (488)
Q Consensus 212 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 291 (488)
++++|.++++++... .+.+..++..++..|.+.|++++|.++|+.+.+.. +.+..+++.++..|.+.|++++|.++
T Consensus 354 ~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 429 (597)
T 2xpi_A 354 EKNKLYLISNDLVDR---HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISA 429 (597)
T ss_dssp CHHHHHHHHHHHHHH---CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CHHHHHHHHHHHHhh---CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999864 23456789999999999999999999999998865 56788999999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---
Q 011323 292 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI--- 368 (488)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--- 368 (488)
|+++.+.+.. +..++..++.+|.+.|++++|.++|+++.+.. +.++.+|+.++..|.+.|++++|.++|+++.+.
T Consensus 430 ~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 507 (597)
T 2xpi_A 430 YTTAARLFQG-THLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKK 507 (597)
T ss_dssp HHHHHHTTTT-CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCcc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhc
Confidence 9999987553 78899999999999999999999999999875 457899999999999999999999999999765
Q ss_pred -CCCCC--HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcC
Q 011323 369 -KLKPT--VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDG 439 (488)
Q Consensus 369 -~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 439 (488)
+..|+ ..+|..++.+|.+.|++++|.+.++++.+.+ +.+..+|..+..+|.+.|++++|.++++++.+..
T Consensus 508 ~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 580 (597)
T 2xpi_A 508 TQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAIS 580 (597)
T ss_dssp SCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence 55677 7899999999999999999999999998764 5578999999999999999999999999999853
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-29 Score=233.81 Aligned_cols=378 Identities=12% Similarity=0.043 Sum_probs=285.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHhcCCh
Q 011323 32 YNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDS 108 (488)
Q Consensus 32 ~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~ 108 (488)
...+.+.|++++|++.++++.+.. |.+......+..++...|++++|..+++... +.+..+|..+..++.+.|++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCH
Confidence 456678999999999999988876 7777777778888888888888888887653 45677888888888888888
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011323 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM 188 (488)
Q Consensus 109 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 188 (488)
++|++.|+.+.+.. +.+..+|..+..++.+.|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.|+++
T Consensus 84 ~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 161 (388)
T 1w3b_A 84 QEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 88888888887764 4456678888888888888888888888887763 334566777778888888888888888888
Q ss_pred HhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 011323 189 RSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 268 (488)
Q Consensus 189 ~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 268 (488)
.... +.+..+|..+...+...|++++|...|+++.... +.+...+..+...+...|++++|...++...... +.+
T Consensus 162 l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~ 236 (388)
T 1w3b_A 162 IETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD---PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNH 236 (388)
T ss_dssp HHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTC
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCC
Confidence 7663 3456778888888888888888888888877642 1234466777777788888888888888777765 456
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHH
Q 011323 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA 348 (488)
Q Consensus 269 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 348 (488)
..++..+...+.+.|++++|...++++.+..+. +..++..+...+.+.|++++|...++++.+.. +.+..++..+...
T Consensus 237 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 314 (388)
T 1w3b_A 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANI 314 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHH
Confidence 777777888888888888888888887776443 56677777778888888888888888777764 4567777777788
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhcC
Q 011323 349 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP-NTITYSILLVACERKD 423 (488)
Q Consensus 349 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g 423 (488)
+.+.|++++|...++++.+.. +.+..++..+...|.+.|++++|.+.++++.+. .| +...|..+...+...|
T Consensus 315 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 315 KREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTC
T ss_pred HHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHhHHHHHHHcc
Confidence 888888888888888777654 445677777777888888888888888877763 34 3556666665555444
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-31 Score=248.74 Aligned_cols=205 Identities=16% Similarity=0.243 Sum_probs=163.2
Q ss_pred HHHHHHHHHHhcCCCCCHH-HHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---------HH
Q 011323 252 RAREVYKMIHKYNIKGTPE-VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK---------VE 321 (488)
Q Consensus 252 ~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---------~~ 321 (488)
.+..+.+.+.+.+...++. .++.+|++|++.|++++|.++|++|.+.|+.||..+|+++|.+|++.+. ++
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~ 87 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLS 87 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHH
Confidence 3444555666665555443 5777888888888888888888888888888888888888888876554 67
Q ss_pred HHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 011323 322 AAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMK 401 (488)
Q Consensus 322 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 401 (488)
.|.++|++|...|+.||..+|++++.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.
T Consensus 88 ~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~ 167 (501)
T 4g26_A 88 RGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMV 167 (501)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHH
Confidence 88888999988888889999999999999999999999999999888888999999999999999999999999999998
Q ss_pred hCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhh
Q 011323 402 SLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 456 (488)
Q Consensus 402 ~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 456 (488)
+.|+.||..||+.|+.+|++.|++++|.+++++|.+.|..|+..||+.++..+..
T Consensus 168 ~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 168 ESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred hcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 8888999999999999999999999999999999888888999999888887653
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-28 Score=223.82 Aligned_cols=360 Identities=13% Similarity=0.064 Sum_probs=315.0
Q ss_pred HHHHhhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHh
Q 011323 68 FNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD 144 (488)
Q Consensus 68 ~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 144 (488)
+..+...|++++|++.++.+. +.+...+..+...+...|++++|...++...+.. +.+..+|..+...+.+.|+++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHH
Confidence 445566799999999998763 4566778888889999999999999999988764 678899999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHh
Q 011323 145 AMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMN 224 (488)
Q Consensus 145 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 224 (488)
+|.+.|+++.+.. +.+..+|..+..++...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.|+++.
T Consensus 85 ~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 162 (388)
T 1w3b_A 85 EAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 9999999998873 3456789999999999999999999999998774 3345667778889999999999999999998
Q ss_pred hCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCH
Q 011323 225 AEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 304 (488)
Q Consensus 225 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 304 (488)
... +.+..++..+...+...|++++|...|+++.+.+ +.+...+..+...+...|++++|...+++.....+. +.
T Consensus 163 ~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~ 237 (388)
T 1w3b_A 163 ETQ---PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HA 237 (388)
T ss_dssp HHC---TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CH
T ss_pred HhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-CH
Confidence 742 2235678889999999999999999999999876 567889999999999999999999999998886543 67
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 011323 305 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 384 (488)
Q Consensus 305 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 384 (488)
.++..+..++...|++++|...++++.+.+ +.++.++..+..++.+.|++++|...++++.+.. +.+..++..+...+
T Consensus 238 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 315 (388)
T 1w3b_A 238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIK 315 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHH
Confidence 889999999999999999999999999875 4467889999999999999999999999998765 67889999999999
Q ss_pred HcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHc
Q 011323 385 CDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 438 (488)
Q Consensus 385 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 438 (488)
.+.|++++|.+.++++.+. .+.+..++..+...+.+.|++++|...++++.+.
T Consensus 316 ~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 316 REQGNIEEAVRLYRKALEV-FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HTTTCHHHHHHHHHHHTTS-CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHcCCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 9999999999999999875 2456889999999999999999999999999874
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-30 Score=245.30 Aligned_cols=187 Identities=18% Similarity=0.281 Sum_probs=155.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCC---------hHHHHHHHHHHHhCCCCCCHHH
Q 011323 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD---------WEFACSVYDDMTKKGVIPDEVF 306 (488)
Q Consensus 236 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~~~ 306 (488)
.++.+|.+|++.|++++|.++|+.|.+.|+.||..+|+.+|.+|++.+. ++.|.++|++|...|+.||..+
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t 107 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT 107 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH
Confidence 4566677777777777777777777777777777777777777766543 5778888888888888888888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 011323 307 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386 (488)
Q Consensus 307 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 386 (488)
|+++|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++
T Consensus 108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~ 187 (501)
T 4g26_A 108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMD 187 (501)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhc
Q 011323 387 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 422 (488)
Q Consensus 387 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 422 (488)
.|+.++|.+++++|.+.|..|+..||+.++..|...
T Consensus 188 ~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 188 TKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp TTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred CCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 888888888888888888888888888888877653
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.9e-23 Score=197.92 Aligned_cols=300 Identities=12% Similarity=0.040 Sum_probs=139.7
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 011323 93 STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGC 172 (488)
Q Consensus 93 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 172 (488)
..+..+...+.+.|++++|+.+|+.+.+.. +.+..++..+..++...|++++|.+.|+++.+.+ +.+..++..+..+|
T Consensus 27 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 104 (450)
T 2y4t_A 27 EKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHLL 104 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHH
Confidence 344444444444444444444444444332 2334444444444444455555554444444432 22344444444444
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCH---hHHHHH------------HHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchH
Q 011323 173 AKAGQVAKAFGAYGIMRSKNVKPDR---VVFNAL------------ITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 237 (488)
Q Consensus 173 ~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l------------l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 237 (488)
...|++++|...|+++.... +.+. ..+..+ ...+...|++++|...|+++.... +.+...+
T Consensus 105 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~ 180 (450)
T 2y4t_A 105 LKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC---VWDAELR 180 (450)
T ss_dssp HHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---TTCHHHH
T ss_pred HHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCChHHH
Confidence 44455555555544444432 1112 222222 222444555555555555544321 1223344
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHH-------
Q 011323 238 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL------- 310 (488)
Q Consensus 238 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l------- 310 (488)
..+..++...|++++|...|+.+.+.. +.+..++..+...|...|++++|...++++...... +...+..+
T Consensus 181 ~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~~~~~~~ 258 (450)
T 2y4t_A 181 ELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLN 258 (450)
T ss_dssp HHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHH
Confidence 444555555555555555555544432 334445555555555555555555555555443221 22222222
Q ss_pred -----HHHHHhcCCHHHHHHHHHHHHHCCCCcc----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 011323 311 -----IDFAGHAGKVEAAFEILQEAKNQGISVG----IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI 381 (488)
Q Consensus 311 -----~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 381 (488)
...+.+.|++++|...|+.+.+.... + ...+..+..++.+.|++++|...++++.+.. +.+...|..+.
T Consensus 259 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~ 336 (450)
T 2y4t_A 259 KLIESAEELIRDGRYTDATSKYESVMKTEPS-IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRA 336 (450)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHH
Confidence 44555555555555555555543211 1 2344555555555555555555555554432 23445555555
Q ss_pred HHHHcCCChhHHHHHHHHHHh
Q 011323 382 TALCDGDQLPKTMEVLSDMKS 402 (488)
Q Consensus 382 ~~~~~~~~~~~a~~~~~~~~~ 402 (488)
.+|...|++++|...++++.+
T Consensus 337 ~~~~~~~~~~~A~~~~~~al~ 357 (450)
T 2y4t_A 337 EAYLIEEMYDEAIQDYETAQE 357 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHhcCHHHHHHHHHHHHH
Confidence 555555555555555555554
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=6.4e-24 Score=204.73 Aligned_cols=404 Identities=10% Similarity=0.017 Sum_probs=316.9
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHh
Q 011323 28 QLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCAS 104 (488)
Q Consensus 28 ~~~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~ 104 (488)
.....+.+.+.|++++|++.|+++.+.+ | +...+..++..+...|++++|++.|+++. +.+..+|..+..++..
T Consensus 9 ~~~~g~~~~~~g~~~~A~~~~~~al~~~--p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 85 (514)
T 2gw1_A 9 LKDKGNQFFRNKKYDDAIKYYNWALELK--E-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEG 85 (514)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHHHC--C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcC--c-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHH
Confidence 3445566779999999999999999987 4 56777888899999999999999998764 5677899999999999
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHc----------------------------
Q 011323 105 SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA---------------------------- 156 (488)
Q Consensus 105 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------------------------- 156 (488)
.|++++|+..|+.+...+ +++......++..+........+.+.+..+...
T Consensus 86 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (514)
T 2gw1_A 86 LGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSM 164 (514)
T ss_dssp TTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHH
T ss_pred HhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHH
Confidence 999999999999999876 445555555555444433333332222111100
Q ss_pred -------CC---------CCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHh-----CCC--------CCCHhHHHHHH
Q 011323 157 -------GI---------EPNVHTYGALIDGCAK---AGQVAKAFGAYGIMRS-----KNV--------KPDRVVFNALI 204 (488)
Q Consensus 157 -------~~---------~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~-----~~~--------~~~~~~~~~ll 204 (488)
.. +.+...+......+.. .|++++|...|+++.. ..- +.+..++..+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (514)
T 2gw1_A 165 ASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTG 244 (514)
T ss_dssp HHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHH
Confidence 00 1114444444454554 8999999999999987 311 22356778888
Q ss_pred HHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCC
Q 011323 205 TACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD 284 (488)
Q Consensus 205 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 284 (488)
..+...|++++|...++++... .|+...+..+..++...|++++|...++.+.... +.+..++..+...+...|+
T Consensus 245 ~~~~~~~~~~~A~~~~~~~l~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 319 (514)
T 2gw1_A 245 IFKFLKNDPLGAHEDIKKAIEL----FPRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQN 319 (514)
T ss_dssp HHHHHSSCHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTC
T ss_pred HHHHHCCCHHHHHHHHHHHHhh----CccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCC
Confidence 8999999999999999998875 2336678888899999999999999999998875 5567889999999999999
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011323 285 WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 364 (488)
Q Consensus 285 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 364 (488)
+++|...+++..+.... +...+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...+++
T Consensus 320 ~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 397 (514)
T 2gw1_A 320 YDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDL 397 (514)
T ss_dssp TTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999999887554 66788889999999999999999999998864 44677889999999999999999999999
Q ss_pred HHhCCCC-CC----HHHHHHHHHHHHc---CCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 011323 365 MKSIKLK-PT----VSTMNALITALCD---GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAK 436 (488)
Q Consensus 365 ~~~~~~~-~~----~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 436 (488)
+.+.... ++ ...+..+...+.. .|++++|...++++.+.. +.+..++..+...+...|++++|...++++.
T Consensus 398 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 476 (514)
T 2gw1_A 398 AIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESA 476 (514)
T ss_dssp HHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 8754211 11 3388889999999 999999999999998753 4467888999999999999999999999999
Q ss_pred HcCCCCcHH
Q 011323 437 EDGVIPNLV 445 (488)
Q Consensus 437 ~~~~~~~~~ 445 (488)
+.. |+..
T Consensus 477 ~~~--~~~~ 483 (514)
T 2gw1_A 477 DLA--RTME 483 (514)
T ss_dssp HHC--SSHH
T ss_pred Hhc--cccH
Confidence 854 5544
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.94 E-value=6.3e-23 Score=194.31 Aligned_cols=328 Identities=12% Similarity=0.034 Sum_probs=258.2
Q ss_pred HHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 011323 43 ECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQ 119 (488)
Q Consensus 43 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 119 (488)
.+...+.++...+ |.+...+..++..+...|++++|+..|+++. +.+..+|..+...+...|++++|+..|+.+.
T Consensus 10 ~~~~~~~~~~~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 87 (450)
T 2y4t_A 10 GVDLGTENLYFQS--MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVI 87 (450)
T ss_dssp ---------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccccccccccccc--HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3445555555555 7788888888888899999999999998764 4678889999999999999999999999998
Q ss_pred HcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCH---HHHHHHHHH------------HHhcCCHHHHHHH
Q 011323 120 EAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNV---HTYGALIDG------------CAKAGQVAKAFGA 184 (488)
Q Consensus 120 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~------------~~~~~~~~~a~~~ 184 (488)
+.+ +.+..++..+..++...|++++|.+.|+.+.+.. +.+. ..+..+... +...|++++|...
T Consensus 88 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~ 165 (450)
T 2y4t_A 88 QLK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAF 165 (450)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred hcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 875 5578889999999999999999999999998763 2234 667766444 8889999999999
Q ss_pred HHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 011323 185 YGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYN 264 (488)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 264 (488)
|+++.... +.+..++..+..++...|++++|.+.|+++.... +.+..++..+..++...|++++|...|+.+....
T Consensus 166 ~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 241 (450)
T 2y4t_A 166 LDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK---NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD 241 (450)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH---CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99998764 5578888999999999999999999999987642 3345688889999999999999999999988765
Q ss_pred CCCCHHHHHHH------------HHHHHccCChHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHH
Q 011323 265 IKGTPEVYTIA------------INCCSQTGDWEFACSVYDDMTKKGVIPD----EVFLSALIDFAGHAGKVEAAFEILQ 328 (488)
Q Consensus 265 ~~~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~ 328 (488)
+.+...+..+ ...+.+.|++++|...|+++.+.... + ...+..+..++.+.|++++|...++
T Consensus 242 -p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 319 (450)
T 2y4t_A 242 -QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-IAEYTVRSKERICHCFSKDEKPVEAIRVCS 319 (450)
T ss_dssp -TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred -CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 4456666555 78889999999999999998885432 2 3477888889999999999999999
Q ss_pred HHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 011323 329 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT 382 (488)
Q Consensus 329 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 382 (488)
.+.+.. +.+...+..+..+|...|++++|...++++.+.. +.+...+..+..
T Consensus 320 ~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 371 (450)
T 2y4t_A 320 EVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHN-ENDQQIREGLEK 371 (450)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHH
T ss_pred HHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cchHHHHHHHHH
Confidence 988764 4468899999999999999999999999998764 334555555443
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.9e-23 Score=200.12 Aligned_cols=409 Identities=11% Similarity=-0.003 Sum_probs=316.6
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHhhhCC--CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 011323 61 KVYHARFFNVCKSQKAIKEAFRFFKLVP--NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCA 138 (488)
Q Consensus 61 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 138 (488)
...+...+..+...|++++|+..|+++. .|+..+|..+..++...|++++|++.++.+.+.+ +.+..++..+..++.
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHH
Confidence 4456667788888899999999998875 4788899999999999999999999999998875 567788999999999
Q ss_pred HcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---------------------------
Q 011323 139 KSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK--------------------------- 191 (488)
Q Consensus 139 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------------------------- 191 (488)
..|++++|.+.|+.+.+.+ +++......++..+........+.+.+..+...
T Consensus 85 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred HHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 9999999999999998875 344444445554444433333332222111100
Q ss_pred --------CC---------CCCHhHHHHHHHHHHc---cCCHHHHHHHHHHHhh-----C--CCCC----CCCcchHHHH
Q 011323 192 --------NV---------KPDRVVFNALITACGQ---SGAVDRAFDVLAEMNA-----E--VHPV----DPDHITIGAL 240 (488)
Q Consensus 192 --------~~---------~~~~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~-----~--~~~~----~~~~~~~~~l 240 (488)
.. +.+...+......+.. .|++++|...++++.. . .+.. +.+..++..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (514)
T 2gw1_A 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT 243 (514)
T ss_dssp HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHH
Confidence 00 1113344444444444 8999999999999876 2 1110 1224567788
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 011323 241 MKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV 320 (488)
Q Consensus 241 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 320 (488)
...+...|++++|...++.+.+.... ...+..+...+...|++++|...++++.+.... +...+..+...+...|++
T Consensus 244 ~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~ 320 (514)
T 2gw1_A 244 GIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSN-NSSVYYHRGQMNFILQNY 320 (514)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTT-CTHHHHHHHHHHHHTTCT
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcC-CHHHHHHHHHHHHHhCCH
Confidence 88999999999999999999887633 888999999999999999999999999887544 677889999999999999
Q ss_pred HHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHH
Q 011323 321 EAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM 400 (488)
Q Consensus 321 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 400 (488)
++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++
T Consensus 321 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 398 (514)
T 2gw1_A 321 DQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLA 398 (514)
T ss_dssp THHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999999999875 4467789999999999999999999999998764 446788899999999999999999999998
Q ss_pred HhCCC-CCC----HHHHHHHHHHHhh---cCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhh--cHHHHHHHHHHhhh
Q 011323 401 KSLGL-CPN----TITYSILLVACER---KDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHVLS 470 (488)
Q Consensus 401 ~~~~~-~p~----~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~--~~~~a~~~~~~~~~ 470 (488)
.+... .++ ...+..+...+.. .|++++|...++++.+... .+...+..+..++.+ ++++|...++.+..
T Consensus 399 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 477 (514)
T 2gw1_A 399 IELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDP-RSEQAKIGLAQMKLQQEDIDEAITLFEESAD 477 (514)
T ss_dssp HHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 76321 111 3388899999999 9999999999999988642 245566666666665 89999999999998
Q ss_pred ccCCCCc
Q 011323 471 FNSGRPQ 477 (488)
Q Consensus 471 ~~~~~~~ 477 (488)
+.|.++.
T Consensus 478 ~~~~~~~ 484 (514)
T 2gw1_A 478 LARTMEE 484 (514)
T ss_dssp HCSSHHH
T ss_pred hccccHH
Confidence 8776554
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1.7e-22 Score=195.95 Aligned_cols=395 Identities=12% Similarity=0.052 Sum_probs=302.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHhc
Q 011323 29 LHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASS 105 (488)
Q Consensus 29 ~~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~ 105 (488)
......+.+.|++++|++.|+++.+.+ |.+...+..++..+...|++++|++.|+++. +.+..++..+..++...
T Consensus 29 ~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 106 (537)
T 3fp2_A 29 KNRGNHFFTAKNFNEAIKYYQYAIELD--PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESL 106 (537)
T ss_dssp HHHHHHHHHTTCCC-CHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHc
Confidence 344556669999999999999999987 7888889999999999999999999998864 56788999999999999
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHc------CCCCCHHH---------------
Q 011323 106 KDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA------GIEPNVHT--------------- 164 (488)
Q Consensus 106 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~--------------- 164 (488)
|++++|+..|+.+ .. .|+.. ...+..+...+...+|.+.++.+... ...|+...
T Consensus 107 g~~~~A~~~~~~~-~~--~~~~~--~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (537)
T 3fp2_A 107 GNFTDAMFDLSVL-SL--NGDFD--GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVS 181 (537)
T ss_dssp TCHHHHHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHH
T ss_pred CCHHHHHHHHHHH-hc--CCCCC--hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHH
Confidence 9999999999633 22 22221 22234455555667788888777542 11222222
Q ss_pred ---------------HHHHHHHHH--------hcCCHHHHHHHHHHHHhCCCCCCH-------hHHHHHHHHHHccCCHH
Q 011323 165 ---------------YGALIDGCA--------KAGQVAKAFGAYGIMRSKNVKPDR-------VVFNALITACGQSGAVD 214 (488)
Q Consensus 165 ---------------~~~l~~~~~--------~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~ll~~~~~~g~~~ 214 (488)
...+...+. ..|++++|..+|+++.+.. +.+. .++..+...+...|+++
T Consensus 182 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~ 260 (537)
T 3fp2_A 182 SVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-TVDDPLRENAALALCYTGIFHFLKNNLL 260 (537)
T ss_dssp TSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-CCcchhhHHHHHHHHHHHHHHHhcccHH
Confidence 122222211 1247899999999998763 2222 34666777888899999
Q ss_pred HHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHH
Q 011323 215 RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD 294 (488)
Q Consensus 215 ~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 294 (488)
+|...+++.... .|+...+..+...+...|++++|...++.+.+.. +.++.++..+...+...|++++|...+++
T Consensus 261 ~A~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 335 (537)
T 3fp2_A 261 DAQVLLQESINL----HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQK 335 (537)
T ss_dssp HHHHHHHHHHHH----CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhc----CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 999999999874 4556678888889999999999999999998876 56788999999999999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-----
Q 011323 295 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK----- 369 (488)
Q Consensus 295 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----- 369 (488)
..+.... +...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+..
T Consensus 336 a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 413 (537)
T 3fp2_A 336 AQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEK 413 (537)
T ss_dssp HHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchh
Confidence 9886544 56788889999999999999999999998875 4567788999999999999999999999987532
Q ss_pred CCCCHHHHHHHHHHHHcC----------CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcC
Q 011323 370 LKPTVSTMNALITALCDG----------DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDG 439 (488)
Q Consensus 370 ~~~~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 439 (488)
.......+......+... |++++|...++++.+.. +.+...+..+...+...|++++|.+.|+++.+..
T Consensus 414 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 414 IHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp CSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 111222344455667777 99999999999998752 4567889999999999999999999999999864
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.91 E-value=7.8e-21 Score=184.18 Aligned_cols=401 Identities=11% Similarity=0.032 Sum_probs=303.1
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 011323 61 KVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137 (488)
Q Consensus 61 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 137 (488)
...+...+..+...|++++|++.|+++. +.+..+|..+..++...|++++|++.++.+.+.+ +.+..++..+..++
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHH
Confidence 4556677788888899999999998764 4678889999999999999999999999998875 56788899999999
Q ss_pred HHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCCCCHhH------------
Q 011323 138 AKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK------NVKPDRVV------------ 199 (488)
Q Consensus 138 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~------------ 199 (488)
...|++++|.+.|+. ... .|+. ....+..+...+....|...++.+... ...|+...
T Consensus 104 ~~~g~~~~A~~~~~~-~~~--~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (537)
T 3fp2_A 104 ESLGNFTDAMFDLSV-LSL--NGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHL 178 (537)
T ss_dssp HHHTCHHHHHHHHHH-HC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHH
T ss_pred HHcCCHHHHHHHHHH-Hhc--CCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHH
Confidence 999999999999963 322 2222 222344555566667788888877543 11122221
Q ss_pred ------------------HHHHHHHHHc--------cCCHHHHHHHHHHHhhCCCCCCCC--------cchHHHHHHHHH
Q 011323 200 ------------------FNALITACGQ--------SGAVDRAFDVLAEMNAEVHPVDPD--------HITIGALMKACA 245 (488)
Q Consensus 200 ------------------~~~ll~~~~~--------~g~~~~a~~~~~~~~~~~~~~~~~--------~~~~~~l~~~~~ 245 (488)
...+...+.. .|++++|..+++++... .|+ ..++..+...+.
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~----~p~~~~~~~~~~~~~~~~g~~~~ 254 (537)
T 3fp2_A 179 EVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA----NTVDDPLRENAALALCYTGIFHF 254 (537)
T ss_dssp HHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC------CCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH----CCCcchhhHHHHHHHHHHHHHHH
Confidence 1222222222 24788999999998864 333 224666677888
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 011323 246 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 325 (488)
Q Consensus 246 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 325 (488)
..|++++|...++.+.... |+...+..+...+...|++++|...+++..+.... +..++..+...+...|++++|..
T Consensus 255 ~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~ 331 (537)
T 3fp2_A 255 LKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-YPPTYYHRGQMYFILQDYKNAKE 331 (537)
T ss_dssp HTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-CHHHHHHHHHHHHhcCCHHHHHH
Confidence 9999999999999998875 44888999999999999999999999999887544 78889999999999999999999
Q ss_pred HHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCC-
Q 011323 326 ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG- 404 (488)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~- 404 (488)
.++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+..
T Consensus 332 ~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 409 (537)
T 3fp2_A 332 DFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEE 409 (537)
T ss_dssp HHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC
Confidence 999999875 3456789999999999999999999999998765 4567789999999999999999999999987532
Q ss_pred ----CCCCHHHHHHHHHHHhhc----------CCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhh--cHHHHHHHHHHh
Q 011323 405 ----LCPNTITYSILLVACERK----------DDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHV 468 (488)
Q Consensus 405 ----~~p~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~--~~~~a~~~~~~~ 468 (488)
.......+......+... |++++|...++++.+... .+...+..+...+.+ ++++|...++.+
T Consensus 410 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 488 (537)
T 3fp2_A 410 VQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDP-RSEQAKIGLAQLKLQMEKIDEAIELFEDS 488 (537)
T ss_dssp HCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 111122344555677777 999999999999988642 244566667677665 899999999999
Q ss_pred hhccCCCCc
Q 011323 469 LSFNSGRPQ 477 (488)
Q Consensus 469 ~~~~~~~~~ 477 (488)
..+.|..+.
T Consensus 489 l~~~~~~~~ 497 (537)
T 3fp2_A 489 AILARTMDE 497 (537)
T ss_dssp HHHC--CHH
T ss_pred HHhCCCcHH
Confidence 988876654
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.91 E-value=5.5e-20 Score=168.35 Aligned_cols=314 Identities=10% Similarity=0.048 Sum_probs=203.3
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 011323 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALID 170 (488)
Q Consensus 91 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 170 (488)
++..+..+...+...|++++|+..|+.+.+.. +.+..++..+..++...|++++|.+.+++..+.. +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 45567777778888888888888888887764 4567788888888888888888888888887763 336677888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCC----CHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHh
Q 011323 171 GCAKAGQVAKAFGAYGIMRSKNVKP----DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 246 (488)
Q Consensus 171 ~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 246 (488)
.+...|++++|...|++..+. .| +...+..+..... + ..+..+...+..
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~-------~------------------~~~~~~a~~~~~ 132 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADE-------M------------------QRLRSQALDAFD 132 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHH-------H------------------HHHHHHHHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHH-------H------------------HHHHHHHHHHHH
Confidence 888888888888888888765 34 3333333321100 0 011223344555
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 011323 247 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326 (488)
Q Consensus 247 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 326 (488)
.|++++|...++.+.+.. +.++..+..+...+...|++++|...+++..+..+. +...+..+...+...|++++|...
T Consensus 133 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~ 210 (359)
T 3ieg_A 133 GADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSD-NTEAFYKISTLYYQLGDHELSLSE 210 (359)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSC-CHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHH
Confidence 666666666666555543 345555666666666666666666666666554332 455566666666666666666666
Q ss_pred HHHHHHCCCCccHHHHH------------HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHcCCCh
Q 011323 327 LQEAKNQGISVGIISYS------------SLMGACSNAKNWQKALELYEHMKSIKLKPTV----STMNALITALCDGDQL 390 (488)
Q Consensus 327 ~~~~~~~~~~~~~~~~~------------~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~ 390 (488)
++...+.. +.+...+. .+...+.+.|++++|...++++.+.. +.+. ..+..+...+...|++
T Consensus 211 ~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~ 288 (359)
T 3ieg_A 211 VRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSVAEYTVRSKERICHCFSKDEKP 288 (359)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHccCH
Confidence 66655543 22222222 23556777788888888887776643 2222 2244566777778888
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHc
Q 011323 391 PKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 438 (488)
Q Consensus 391 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 438 (488)
++|...+++..+.. +.+..++..+...+...|++++|...++++.+.
T Consensus 289 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 289 VEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 88888888777642 335677777788888888888888888877763
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.91 E-value=8.9e-20 Score=166.98 Aligned_cols=318 Identities=12% Similarity=0.036 Sum_probs=242.4
Q ss_pred CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHH
Q 011323 126 DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALIT 205 (488)
Q Consensus 126 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 205 (488)
++..+..+...+...|++++|.+.|+.+.+.. +.+..++..+...+...|++++|...++++.+.. +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 34566777788888888888888888887763 3457778888888888888888888888887663 335677777888
Q ss_pred HHHccCCHHHHHHHHHHHhhCCCCCCC---C-cchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc
Q 011323 206 ACGQSGAVDRAFDVLAEMNAEVHPVDP---D-HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ 281 (488)
Q Consensus 206 ~~~~~g~~~~a~~~~~~~~~~~~~~~~---~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 281 (488)
++...|++++|...+++.... .| + ...+..+..... ...+..+...+..
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~ 132 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKS----NPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFD 132 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTS----CCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHhc----CCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHH
Confidence 888888888888888887653 33 1 111211111100 1123445678899
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHH
Q 011323 282 TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 361 (488)
Q Consensus 282 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 361 (488)
.|++++|...++++.+.... +...+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...
T Consensus 133 ~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~ 210 (359)
T 3ieg_A 133 GADYTAAITFLDKILEVCVW-DAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSE 210 (359)
T ss_dssp TTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999887554 78889999999999999999999999999875 55788999999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHH------------HHHHHHcCCChhHHHHHHHHHHhCCCCCCH----HHHHHHHHHHhhcCCH
Q 011323 362 YEHMKSIKLKPTVSTMNA------------LITALCDGDQLPKTMEVLSDMKSLGLCPNT----ITYSILLVACERKDDV 425 (488)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~------------l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~ 425 (488)
+++..+.. +.+...+.. +...+.+.|++++|...++++.+.. +.+. ..+..+...+...|++
T Consensus 211 ~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~ 288 (359)
T 3ieg_A 211 VRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSVAEYTVRSKERICHCFSKDEKP 288 (359)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHccCH
Confidence 99998764 344444432 3667899999999999999998742 2233 2355678899999999
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHhh--cHHHHHHHHHHhhhccCCCCc
Q 011323 426 EVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHVLSFNSGRPQ 477 (488)
Q Consensus 426 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~--~~~~a~~~~~~~~~~~~~~~~ 477 (488)
++|...++++.+.. +.+...+..+...+.+ ++++|....+.+...+|.++.
T Consensus 289 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~ 341 (359)
T 3ieg_A 289 VEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQ 341 (359)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHH
T ss_pred HHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChH
Confidence 99999999998853 2255566666666665 899999999999988776544
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.6e-17 Score=157.14 Aligned_cols=365 Identities=11% Similarity=0.006 Sum_probs=289.6
Q ss_pred HHHHHHHHHHCCCCCchHHHHHHHHHHHhh----hHHHHHHHHHhhhCC-CCCHHHHHHHHHHHHh----cCChhHHHHH
Q 011323 44 CIDLLEDMERKGLLDMDKVYHARFFNVCKS----QKAIKEAFRFFKLVP-NPTLSTFNMLMSVCAS----SKDSEGAFQV 114 (488)
Q Consensus 44 A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~-~~~~~~~~~l~~~~~~----~~~~~~a~~~ 114 (488)
++..+....+.+ +......+...+.. .+++++|+..|++.. ..+...+..+...|.. .+++++|.+.
T Consensus 26 ~~~~~~~~a~~g----~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~ 101 (490)
T 2xm6_A 26 NLEQLKQKAESG----EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIW 101 (490)
T ss_dssp CHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 355555555544 33444555666655 678899999988764 4567788888888888 8899999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHH----cCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHH
Q 011323 115 LRLVQEAGLKADCKLYTTLITTCAK----SGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAK----AGQVAKAFGAYG 186 (488)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~ 186 (488)
|++..+.| +...+..+...|.. .+++++|.+.|++..+.| +...+..+...|.. .+++++|.+.|+
T Consensus 102 ~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 175 (490)
T 2xm6_A 102 YKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYS 175 (490)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 99988765 56777778888887 789999999999988765 66778888888887 789999999999
Q ss_pred HHHhCCCCCCHhHHHHHHHHHHc----cCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHh----cCCHHHHHHHHH
Q 011323 187 IMRSKNVKPDRVVFNALITACGQ----SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN----AGQVDRAREVYK 258 (488)
Q Consensus 187 ~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~ 258 (488)
+..+.| +...+..+...|.. .++.++|.+.|++.... .+...+..+...|.. .+++++|..+|+
T Consensus 176 ~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-----~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~ 247 (490)
T 2xm6_A 176 KAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS-----GDELGQLHLADMYYFGIGVTQDYTQSRVLFS 247 (490)
T ss_dssp HHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 988775 67778888888877 78999999999988764 234566777777775 789999999999
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHc----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHH
Q 011323 259 MIHKYNIKGTPEVYTIAINCCSQ----TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA-----GKVEAAFEILQE 329 (488)
Q Consensus 259 ~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~a~~~~~~ 329 (488)
...+.+ ++..+..+...|.. .+++++|...|++..+.| +...+..+...|... +++++|...+++
T Consensus 248 ~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~ 321 (490)
T 2xm6_A 248 QSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTK 321 (490)
T ss_dssp HHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHH
Confidence 888754 45677777777777 889999999999988764 556677777788777 899999999999
Q ss_pred HHHCCCCccHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----CCChhHHHHHHHHHHh
Q 011323 330 AKNQGISVGIISYSSLMGACSNAK---NWQKALELYEHMKSIKLKPTVSTMNALITALCD----GDQLPKTMEVLSDMKS 402 (488)
Q Consensus 330 ~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~ 402 (488)
..+.+ +...+..+...|...| +.++|.+.|++..+. .+...+..+...|.. .+++++|...+++..+
T Consensus 322 a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~ 395 (490)
T 2xm6_A 322 SAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK---GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAE 395 (490)
T ss_dssp HHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHh
Confidence 98875 4567777888887766 788999999998875 367788888888888 8899999999999988
Q ss_pred CCCCCCHHHHHHHHHHHhh----cCCHHHHHHHHHHHHHcCCC
Q 011323 403 LGLCPNTITYSILLVACER----KDDVEVGLMLLSQAKEDGVI 441 (488)
Q Consensus 403 ~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~ 441 (488)
.| +...+..+...|.. .+++++|..+|+++.+.+..
T Consensus 396 ~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 396 QG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMN 435 (490)
T ss_dssp TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred CC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence 65 56777788888887 89999999999999987644
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.1e-19 Score=162.47 Aligned_cols=285 Identities=12% Similarity=0.022 Sum_probs=137.3
Q ss_pred CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHH
Q 011323 126 DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALIT 205 (488)
Q Consensus 126 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 205 (488)
+...+..+...+...|++++|.++|+++.+.. +.+...+..++..+...|++++|...++++.+.. +.+...+..+..
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 98 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGC 98 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHH
Confidence 33344444444444455555555555544432 2233334444444445555555555555544432 223444444444
Q ss_pred HHHccC-CHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCC
Q 011323 206 ACGQSG-AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD 284 (488)
Q Consensus 206 ~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 284 (488)
.+...| ++++|.+.|++..... +.+...+..+...+...|++++|...++.+.+.. +.+...+..+...+...|+
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~ 174 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLE---KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNN 174 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTC---TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTC
T ss_pred HHHHhhhhHHHHHHHHHHHHHhC---CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhh
Confidence 455555 4555555555544321 1122344444455555555555555555554443 2233444445555555555
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--------CCccHHHHHHHHHHHHhcCCHH
Q 011323 285 WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG--------ISVGIISYSSLMGACSNAKNWQ 356 (488)
Q Consensus 285 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~ 356 (488)
+++|...+++..+.... +...+..+...+...|++++|...++++.+.. .+....++..+..++...|+++
T Consensus 175 ~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 253 (330)
T 3hym_B 175 SKLAERFFSQALSIAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA 253 (330)
T ss_dssp HHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH
Confidence 55555555555544322 44445555555555555555555555544321 0222345555555556666666
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 011323 357 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 419 (488)
Q Consensus 357 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 419 (488)
+|...+++..+.. +.+...+..+...+.+.|++++|.+.+++..+.. +.+...+..+..++
T Consensus 254 ~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 254 EALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCI 314 (330)
T ss_dssp HHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHH
Confidence 6666665555443 2344555555556666666666666666555431 22344445554444
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=5.7e-19 Score=159.66 Aligned_cols=292 Identities=14% Similarity=0.070 Sum_probs=239.5
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 011323 90 PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALI 169 (488)
Q Consensus 90 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 169 (488)
.+...+..+...+...|++++|+++++.+.+.. +.+...+..++.++...|++++|..+++++.+.. +.+...+..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 455667778888888899999999999988765 5566677778888899999999999999988764 44677888889
Q ss_pred HHHHhcC-CHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcC
Q 011323 170 DGCAKAG-QVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 248 (488)
Q Consensus 170 ~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 248 (488)
..+...| ++++|...|++..... +.+...+..+...+...|++++|.+.+++..... +.+...+..+...+...|
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~l~~~~~~~~ 173 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM---KGCHLPMLYIGLEYGLTN 173 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT---TTCSHHHHHHHHHHHHTT
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc---cccHHHHHHHHHHHHHHh
Confidence 9999999 8999999999988764 4457788889999999999999999999987742 223456777888899999
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCC--------CCCCHHHHHHHHHHHHhcCCH
Q 011323 249 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG--------VIPDEVFLSALIDFAGHAGKV 320 (488)
Q Consensus 249 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~ 320 (488)
++++|...++.+.+.. +.+...+..+...+...|++++|...+++..+.. ...+..++..+..++...|++
T Consensus 174 ~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 252 (330)
T 3hym_B 174 NSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY 252 (330)
T ss_dssp CHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCH
Confidence 9999999999998875 5678889999999999999999999999887632 123457888999999999999
Q ss_pred HHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HcCCCh
Q 011323 321 EAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL-CDGDQL 390 (488)
Q Consensus 321 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~ 390 (488)
++|...+++..+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+..++ ...|+.
T Consensus 253 ~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 253 AEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCch
Confidence 99999999998865 4467888999999999999999999999988765 45677888888777 455554
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.87 E-value=6.7e-17 Score=154.31 Aligned_cols=351 Identities=13% Similarity=0.045 Sum_probs=291.9
Q ss_pred CCchhHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhh----hHHHHHHHHHhhhCC-CCCHHH
Q 011323 24 DVSEQLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS----QKAIKEAFRFFKLVP-NPTLST 94 (488)
Q Consensus 24 ~~~~~~~~~~~l~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~-~~~~~~ 94 (488)
+.......-..+.. .+++++|++.|+...+.+ +......++.++.. .++.++|++.|++.. ..+...
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a 113 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG----YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQA 113 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHH
Confidence 34444444455555 799999999999999875 34455567777777 789999999998875 457778
Q ss_pred HHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHhHHHHHHHHHHHcCCCCCHHHHH
Q 011323 95 FNMLMSVCAS----SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK----SGKVDAMFEVFHEMVNAGIEPNVHTYG 166 (488)
Q Consensus 95 ~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 166 (488)
+..+...|.. .+++++|+..|+...+.| +...+..+...|.. .++.++|.+.|++..+.| +...+.
T Consensus 114 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~ 187 (490)
T 2xm6_A 114 QQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCN 187 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 8888888888 889999999999998865 56788888888887 789999999999998864 678888
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHc----cCCHHHHHHHHHHHhhCCCCCCCCcchHH
Q 011323 167 ALIDGCAK----AGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ----SGAVDRAFDVLAEMNAEVHPVDPDHITIG 238 (488)
Q Consensus 167 ~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 238 (488)
.+...|.. .+++++|.+.|++..+.| +...+..+...|.. .+++++|...|++.... .+...+.
T Consensus 188 ~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~-----~~~~a~~ 259 (490)
T 2xm6_A 188 QLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ-----GNSIAQF 259 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT-----TCHHHHH
T ss_pred HHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-----CCHHHHH
Confidence 89999988 899999999999998875 56777788888876 78999999999998764 2344666
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcc-----CChHHHHHHHHHHHhCCCCCCHHHHHH
Q 011323 239 ALMKACAN----AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT-----GDWEFACSVYDDMTKKGVIPDEVFLSA 309 (488)
Q Consensus 239 ~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~ 309 (488)
.+...+.. .+++++|..+|+...+.+ ++..+..+...|... +++++|...+++..+.+ +...+..
T Consensus 260 ~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~ 333 (490)
T 2xm6_A 260 RLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQAN 333 (490)
T ss_dssp HHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHH
Confidence 77777777 899999999999998764 567788888888887 89999999999998875 4567777
Q ss_pred HHHHHHhcC---CHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 011323 310 LIDFAGHAG---KVEAAFEILQEAKNQGISVGIISYSSLMGACSN----AKNWQKALELYEHMKSIKLKPTVSTMNALIT 382 (488)
Q Consensus 310 l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 382 (488)
+...|...| ++++|.+.|++..+.+ ++..+..+...|.. .+++++|...|++..+.+ +...+..+..
T Consensus 334 lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~ 407 (490)
T 2xm6_A 334 LGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGE 407 (490)
T ss_dssp HHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 888887766 7899999999999875 67888899999988 899999999999998865 5778888888
Q ss_pred HHHc----CCChhHHHHHHHHHHhCC
Q 011323 383 ALCD----GDQLPKTMEVLSDMKSLG 404 (488)
Q Consensus 383 ~~~~----~~~~~~a~~~~~~~~~~~ 404 (488)
.|.. .+++++|...|++..+.+
T Consensus 408 ~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 408 IYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 8887 899999999999998865
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.86 E-value=1.7e-17 Score=160.02 Aligned_cols=408 Identities=11% Similarity=0.074 Sum_probs=247.7
Q ss_pred ccCCCchhHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCC--CCCHHHHHHH
Q 011323 21 YAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPTLSTFNML 98 (488)
Q Consensus 21 ~~~~~~~~~~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l 98 (488)
.|.+.......+. +.+.|++++|..+|+++++.. |.+..+...++....+.|++++|..+|+++. .|+...|...
T Consensus 9 ~P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~--P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~ 85 (530)
T 2ooe_A 9 NPYDLDAWSILIR-EAQNQPIDKARKTYERLVAQF--PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCY 85 (530)
T ss_dssp CTTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHH
T ss_pred CCCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHH
Confidence 3444444444444 356899999999999999875 7788888888888888899999999999876 3677777777
Q ss_pred HHHH-HhcCChhHHHH----HHHHHHHc-CCC-CCHHHHHHHHHHHHH---------cCCHhHHHHHHHHHHHcCCCCCH
Q 011323 99 MSVC-ASSKDSEGAFQ----VLRLVQEA-GLK-ADCKLYTTLITTCAK---------SGKVDAMFEVFHEMVNAGIEPNV 162 (488)
Q Consensus 99 ~~~~-~~~~~~~~a~~----~~~~~~~~-~~~-~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~ 162 (488)
+... ...|+.+.|.+ +|+..... |.. ++...|...+..... .|++++|.++|++.++....+..
T Consensus 86 ~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~ 165 (530)
T 2ooe_A 86 LSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIE 165 (530)
T ss_dssp HHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHH
T ss_pred HHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHH
Confidence 7543 45677777665 66665543 433 356677777776654 68889999999998873111112
Q ss_pred HHHHHHHHHH-------------HhcCCHHHHHHHHHHHH------hCC---CCCC--------HhHHHHHHHHHHcc--
Q 011323 163 HTYGALIDGC-------------AKAGQVAKAFGAYGIMR------SKN---VKPD--------RVVFNALITACGQS-- 210 (488)
Q Consensus 163 ~~~~~l~~~~-------------~~~~~~~~a~~~~~~~~------~~~---~~~~--------~~~~~~ll~~~~~~-- 210 (488)
..|....... ...+++..|..++..+. +.. ++|+ ...|...+......
T Consensus 166 ~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~ 245 (530)
T 2ooe_A 166 QLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPL 245 (530)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCc
Confidence 3443322211 12334556666555421 111 2333 13344433322211
Q ss_pred --CCH----HHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHh-------cCCHH-------HHHHHHHHHHhcCCCCCHH
Q 011323 211 --GAV----DRAFDVLAEMNAEVHPVDPDHITIGALMKACAN-------AGQVD-------RAREVYKMIHKYNIKGTPE 270 (488)
Q Consensus 211 --g~~----~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~ 270 (488)
++. ..+..+|++..... +.+...|...+..+.+ .|+++ +|..+++...+.-.+.+..
T Consensus 246 ~~~~~~~~~~~a~~~y~~al~~~---p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~ 322 (530)
T 2ooe_A 246 RTEDQTLITKRVMFAYEQCLLVL---GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNML 322 (530)
T ss_dssp CCSCSHHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHH
T ss_pred cCCcchhHHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHH
Confidence 222 35566666665531 1233455555555554 56665 6777777776522244566
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHH-
Q 011323 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD-EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA- 348 (488)
Q Consensus 271 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~- 348 (488)
.+..++..+.+.|++++|..+|+++.+.... + ...|...+..+.+.|++++|..+|++..+.. +.+...+......
T Consensus 323 l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~ 400 (530)
T 2ooe_A 323 LYFAYADYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALME 400 (530)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHSSSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhCcccc-CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHH
Confidence 7777777777777777777777777764322 2 2466666666667777777777777776643 2222222222212
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCC-CCCC--HHHHHHHHHHHhhcCCH
Q 011323 349 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG-LCPN--TITYSILLVACERKDDV 425 (488)
Q Consensus 349 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~p~--~~~~~~l~~~~~~~g~~ 425 (488)
+...|+.++|..+|+...+.. +.+...|..++..+.+.|+.++|..+|++....+ ..|+ ...|...+......|+.
T Consensus 401 ~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~ 479 (530)
T 2ooe_A 401 YYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDL 479 (530)
T ss_dssp HHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCH
T ss_pred HHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 234677777777777766543 3356667777777777777777777777776542 1222 33566666666667777
Q ss_pred HHHHHHHHHHHH
Q 011323 426 EVGLMLLSQAKE 437 (488)
Q Consensus 426 ~~a~~~~~~~~~ 437 (488)
+.+..+.+++.+
T Consensus 480 ~~~~~~~~r~~~ 491 (530)
T 2ooe_A 480 ASILKVEKRRFT 491 (530)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777777776665
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.86 E-value=1.8e-17 Score=159.84 Aligned_cols=421 Identities=10% Similarity=0.064 Sum_probs=300.8
Q ss_pred HHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 011323 48 LEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLK 124 (488)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 124 (488)
|++.++.+ |.+...+..++.. ...|++++|+.+|+++. +.+...|...+..+.+.|++++|..+|+++.+. .
T Consensus 2 le~al~~~--P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~ 76 (530)
T 2ooe_A 2 AEKKLEEN--PYDLDAWSILIRE-AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--V 76 (530)
T ss_dssp HHHHHHHC--TTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--C
T ss_pred hhhHhhhC--CCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--C
Confidence 55666665 6677666666665 56789999999999875 457788999999999999999999999999876 3
Q ss_pred CCHHHHHHHHHHH-HHcCCHhHHHH----HHHHHHHc-CCCC-CHHHHHHHHHHHHh---------cCCHHHHHHHHHHH
Q 011323 125 ADCKLYTTLITTC-AKSGKVDAMFE----VFHEMVNA-GIEP-NVHTYGALIDGCAK---------AGQVAKAFGAYGIM 188 (488)
Q Consensus 125 ~~~~~~~~l~~~~-~~~~~~~~a~~----~~~~~~~~-~~~~-~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~ 188 (488)
|+...|...+... ...|+.+.|.+ +|+..... |..| +...|...+....+ .|+++.|..+|++.
T Consensus 77 p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~a 156 (530)
T 2ooe_A 77 LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRG 156 (530)
T ss_dssp CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHH
Confidence 6877887777533 45677777665 77766543 5443 56788888877655 78999999999999
Q ss_pred HhCCCCCCHhHHHHHHHHH-------------HccCCHHHHHHHHHHH------hhCC-CCCCCCc--------chHHHH
Q 011323 189 RSKNVKPDRVVFNALITAC-------------GQSGAVDRAFDVLAEM------NAEV-HPVDPDH--------ITIGAL 240 (488)
Q Consensus 189 ~~~~~~~~~~~~~~ll~~~-------------~~~g~~~~a~~~~~~~------~~~~-~~~~~~~--------~~~~~l 240 (488)
......+....|....... ...+++..|..++... .... ..++|+. ..|...
T Consensus 157 l~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~ 236 (530)
T 2ooe_A 157 CVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKY 236 (530)
T ss_dssp TTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHH
T ss_pred HhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHH
Confidence 8742111123443322211 1345567777776652 2111 1123331 234444
Q ss_pred HHHHHhc----CCH----HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc-------cCChH-------HHHHHHHHHHhC
Q 011323 241 MKACANA----GQV----DRAREVYKMIHKYNIKGTPEVYTIAINCCSQ-------TGDWE-------FACSVYDDMTKK 298 (488)
Q Consensus 241 ~~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~~~~ 298 (488)
+...... ++. +.+..+|+...... +.++..|..++..+.+ .|+++ +|..++++..+.
T Consensus 237 ~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~ 315 (530)
T 2ooe_A 237 IQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST 315 (530)
T ss_dssp HHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHH
Confidence 3322221 232 47778898888764 6678899888888875 79987 899999998863
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 011323 299 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVG-IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 377 (488)
Q Consensus 299 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 377 (488)
-.+-+...+..++..+.+.|++++|..+|+++.+.. +.+ ...|..++..+.+.|++++|..+|++..+.. +.+...|
T Consensus 316 ~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~ 393 (530)
T 2ooe_A 316 LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVY 393 (530)
T ss_dssp TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHH
T ss_pred hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcc-ccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHH
Confidence 222368889999999999999999999999999864 223 3588888998999999999999999998753 2233333
Q ss_pred HHHHHH-HHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcC-CCCc--HHHHHHHHHH
Q 011323 378 NALITA-LCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDG-VIPN--LVMFKCIIGM 453 (488)
Q Consensus 378 ~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~--~~~~~~li~~ 453 (488)
...... +...|+.++|..+|++..+. .+.+...|..++..+.+.|+.++|..+|+++...+ ..|+ ...|...+..
T Consensus 394 ~~~a~~~~~~~~~~~~A~~~~e~al~~-~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~ 472 (530)
T 2ooe_A 394 VTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAF 472 (530)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Confidence 332222 34689999999999998874 24468899999999999999999999999999873 3443 4467776765
Q ss_pred Hhh--cHHHHHHHHHHhhhccCCCCc
Q 011323 454 CSR--RYEKARTLNEHVLSFNSGRPQ 477 (488)
Q Consensus 454 ~~~--~~~~a~~~~~~~~~~~~~~~~ 477 (488)
... +.+.+..+.+++....|.+++
T Consensus 473 e~~~G~~~~~~~~~~r~~~~~p~~~~ 498 (530)
T 2ooe_A 473 ESNIGDLASILKVEKRRFTAFREEYE 498 (530)
T ss_dssp HHHSSCHHHHHHHHHHHHHHTHHHHT
T ss_pred HHHcCCHHHHHHHHHHHHHHCchhcc
Confidence 543 789999999988888775443
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.84 E-value=5.5e-19 Score=162.44 Aligned_cols=231 Identities=13% Similarity=0.064 Sum_probs=106.2
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHc
Q 011323 130 YTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209 (488)
Q Consensus 130 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 209 (488)
+..+...+...|++++|.+.|+++.+.. +.+..++..+...+...|++++|...|+++.... +.+..++..+..++..
T Consensus 67 ~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~ 144 (368)
T 1fch_A 67 PFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTN 144 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence 3344444444444444444444444432 2233444444444444444444444444444332 2234444444444444
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCCCcc--------------hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-CHHHHHH
Q 011323 210 SGAVDRAFDVLAEMNAEVHPVDPDHI--------------TIGALMKACANAGQVDRAREVYKMIHKYNIKG-TPEVYTI 274 (488)
Q Consensus 210 ~g~~~~a~~~~~~~~~~~~~~~~~~~--------------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~ 274 (488)
.|++++|...++++....+. .+... .+..+. .+...|++++|...++.+.+..... +..++..
T Consensus 145 ~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~ 222 (368)
T 1fch_A 145 ESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILG-SLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCG 222 (368)
T ss_dssp TTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTH-HHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHH-HHhhcccHHHHHHHHHHHHHhCcCcccHHHHHH
Confidence 44444444444444432100 00000 000111 1225556666666666555543111 3555555
Q ss_pred HHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCC
Q 011323 275 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 354 (488)
Q Consensus 275 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 354 (488)
+...+...|++++|...+++..+.... +..++..+...+...|++++|...++++.+.. +.+...+..+..+|.+.|+
T Consensus 223 l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~ 300 (368)
T 1fch_A 223 LGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGA 300 (368)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCC
Confidence 555566666666666666555544222 34455555555555555555555555555432 2334455555555555555
Q ss_pred HHHHHHHHHHHH
Q 011323 355 WQKALELYEHMK 366 (488)
Q Consensus 355 ~~~a~~~~~~~~ 366 (488)
+++|...|+++.
T Consensus 301 ~~~A~~~~~~al 312 (368)
T 1fch_A 301 HREAVEHFLEAL 312 (368)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555555544
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.83 E-value=1e-18 Score=160.63 Aligned_cols=308 Identities=10% Similarity=-0.082 Sum_probs=223.6
Q ss_pred cCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHH-HhhhCC---CC----CHHHHHHHHHHHHhcCChh
Q 011323 38 QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFR-FFKLVP---NP----TLSTFNMLMSVCASSKDSE 109 (488)
Q Consensus 38 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~-~~~~~~---~~----~~~~~~~l~~~~~~~~~~~ 109 (488)
.+.++.+...++.+.+.+ +. .+...|++++|++ .|++.. +. +...+..+...+...|+++
T Consensus 14 ~~~~~~~~~~~~~~~~~~--~~----------~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 81 (368)
T 1fch_A 14 VDFWDKLQAELEEMAKRD--AE----------AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLP 81 (368)
T ss_dssp --------------------------------------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHH
T ss_pred cccHHHHHHHHHHHHcCC--ch----------hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHH
Confidence 344455555666665544 11 1122377888888 777553 11 3456788889999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011323 110 GAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189 (488)
Q Consensus 110 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 189 (488)
+|+..++.+.+.. +.+..++..+..++...|++++|.+.|++..+.. +.+..++..+...+...|++++|...++++.
T Consensus 82 ~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 159 (368)
T 1fch_A 82 NAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWL 159 (368)
T ss_dssp HHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999999875 5678899999999999999999999999998875 4578899999999999999999999999998
Q ss_pred hCCCCCCHhHHHH---------------HHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCCHHHHH
Q 011323 190 SKNVKPDRVVFNA---------------LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 254 (488)
Q Consensus 190 ~~~~~~~~~~~~~---------------ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 254 (488)
... +.+...+.. .+..+...|++++|...++++....+. .++..++..+...+...|++++|.
T Consensus 160 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~l~~~~~~~g~~~~A~ 237 (368)
T 1fch_A 160 RYT-PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPT-SIDPDVQCGLGVLFNLSGEYDKAV 237 (368)
T ss_dssp HTS-TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTT-SCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhC-cCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcC-cccHHHHHHHHHHHHHcCCHHHHH
Confidence 764 222333221 233444889999999999999875211 114567888999999999999999
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 011323 255 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334 (488)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 334 (488)
..++.+.... +.+..++..+...+...|++++|...+++..+.... +...+..+..++.+.|++++|...++++.+..
T Consensus 238 ~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 315 (368)
T 1fch_A 238 DCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPG-YIRSRYNLGISCINLGAHREAVEHFLEALNMQ 315 (368)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 9999998875 567889999999999999999999999999886543 67889999999999999999999999987643
Q ss_pred CCc----------cHHHHHHHHHHHHhcCCHHHHHHHHH
Q 011323 335 ISV----------GIISYSSLMGACSNAKNWQKALELYE 363 (488)
Q Consensus 335 ~~~----------~~~~~~~l~~~~~~~g~~~~a~~~~~ 363 (488)
... ...+|..+..+|...|++++|..+++
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 316 RKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp HTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred CCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHH
Confidence 111 15677777777777777777776665
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.5e-17 Score=146.58 Aligned_cols=258 Identities=12% Similarity=0.151 Sum_probs=192.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCchH-HHHHHHHHHHhhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHhcCC
Q 011323 29 LHSYNRLIRQGRISECIDLLEDMERKGLLDMDK-VYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKD 107 (488)
Q Consensus 29 ~~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~ 107 (488)
+..+...+..|++..|++.++...... |.+. .....+...+...|++++|+..++...+++..++..+...+...++
T Consensus 3 l~~~~~~~~~g~y~~ai~~~~~~~~~~--p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~ 80 (291)
T 3mkr_A 3 LFDVKNAFYIGSYQQCINEAQRVKPSS--PERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSR 80 (291)
T ss_dssp THHHHHHHHTTCHHHHHHHHHHSCCCS--HHHHHHHHHHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTT
T ss_pred chHHHHHHHHHHHHHHHHHHHhcccCC--chhhHHHHHHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCc
Confidence 456777888999999999888765443 4442 3556677888888999999988877666677788888888888899
Q ss_pred hhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 011323 108 SEGAFQVLRLVQEAGLKA-DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYG 186 (488)
Q Consensus 108 ~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 186 (488)
.++|++.++.+...+..| +...+..+...+...|++++|++.+++ +.+...+..++..+.+.|++++|.+.|+
T Consensus 81 ~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~ 154 (291)
T 3mkr_A 81 RDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELK 154 (291)
T ss_dssp HHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999888765434 566677777888899999999988877 4577888888888889999999999998
Q ss_pred HHHhCCCCCCHhHH---HHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 011323 187 IMRSKNVKPDRVVF---NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY 263 (488)
Q Consensus 187 ~~~~~~~~~~~~~~---~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 263 (488)
++.+.. |+.... ...+..+...|++++|..+|+++... .+.+...++.+..++.+.|++++|...++++...
T Consensus 155 ~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~---~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~ 229 (291)
T 3mkr_A 155 KMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK---CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK 229 (291)
T ss_dssp HHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH---SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 888763 443211 12233344557888888888888764 2334556777777888888888888888887776
Q ss_pred CCCCCHHHHHHHHHHHHccCChHH-HHHHHHHHHhCCC
Q 011323 264 NIKGTPEVYTIAINCCSQTGDWEF-ACSVYDDMTKKGV 300 (488)
Q Consensus 264 ~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~~ 300 (488)
. +.++.++..++..+...|+.++ +.++++++.+..+
T Consensus 230 ~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P 266 (291)
T 3mkr_A 230 D-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHR 266 (291)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT
T ss_pred C-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC
Confidence 5 5677778778878888887765 5677777776543
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.81 E-value=5.3e-18 Score=155.67 Aligned_cols=234 Identities=12% Similarity=-0.029 Sum_probs=141.8
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 011323 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALID 170 (488)
Q Consensus 91 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 170 (488)
+...+..+...+.+.|++++|++.|+.+.+.. +.+..++..+..++...|++++|.+.|++..+.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 44567788888888899999999998888765 5577888888888888999999999998888764 345778888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCC-HhHH----------HHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHH
Q 011323 171 GCAKAGQVAKAFGAYGIMRSKNVKPD-RVVF----------NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA 239 (488)
Q Consensus 171 ~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~----------~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 239 (488)
.|...|++++|...|+++.+.. |+ ...+ ..+...+...|++++|...++++....+ ...+..++..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~ 218 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNG-DMIDPDLQTG 218 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSC-SSCCHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCc-CccCHHHHHH
Confidence 8888888888888888887652 22 1112 2234455555555566555555554311 0112334455
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 011323 240 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 319 (488)
Q Consensus 240 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 319 (488)
+...+...|++++|...++.+.+.. +.+..++..+..+|...|++++|...+++..+..+. +..++..+..+|...|+
T Consensus 219 l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~ 296 (365)
T 4eqf_A 219 LGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG-FIRSRYNLGISCINLGA 296 (365)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHCCC
Confidence 5555555555555555555555443 334445555555555555555555555555443222 34444445555555555
Q ss_pred HHHHHHHHHHHH
Q 011323 320 VEAAFEILQEAK 331 (488)
Q Consensus 320 ~~~a~~~~~~~~ 331 (488)
+++|...++++.
T Consensus 297 ~~~A~~~~~~al 308 (365)
T 4eqf_A 297 YREAVSNFLTAL 308 (365)
T ss_dssp CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555555444
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.81 E-value=4e-18 Score=156.52 Aligned_cols=274 Identities=12% Similarity=0.021 Sum_probs=164.6
Q ss_pred HHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHH
Q 011323 128 KLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITAC 207 (488)
Q Consensus 128 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 207 (488)
..+..+...+.+.|++++|.+.|+.+.+.. +.+..+|..+...|...|++++|+..|+++.... +.+..++..+..++
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 143 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSY 143 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 345556666666666666666666665543 3345566666666666666666666666665542 23455555566666
Q ss_pred HccCCHHHHHHHHHHHhhCCCCCCCCc-chHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChH
Q 011323 208 GQSGAVDRAFDVLAEMNAEVHPVDPDH-ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWE 286 (488)
Q Consensus 208 ~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 286 (488)
...|++++|...++++... .|+. ..+..+. .....+..+...+...|+++
T Consensus 144 ~~~g~~~~A~~~~~~al~~----~p~~~~~~~~~~-------------------------~~~~~~~~l~~~~~~~g~~~ 194 (365)
T 4eqf_A 144 TNTSHQQDACEALKNWIKQ----NPKYKYLVKNKK-------------------------GSPGLTRRMSKSPVDSSVLE 194 (365)
T ss_dssp HHTTCHHHHHHHHHHHHHH----CHHHHCC--------------------------------------------CCHHHH
T ss_pred HccccHHHHHHHHHHHHHh----CccchHHHhhhc-------------------------cchHHHHHHHHHHhhhhhHH
Confidence 6666666666666555442 1210 0110000 11233444566677777777
Q ss_pred HHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011323 287 FACSVYDDMTKKGVI-PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 365 (488)
Q Consensus 287 ~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 365 (488)
+|...++++.+.... ++..++..+...+...|++++|...++++.+.. +.+..++..+..+|...|++++|...|+++
T Consensus 195 ~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 273 (365)
T 4eqf_A 195 GVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRA 273 (365)
T ss_dssp HHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 777777777665332 156677777777777778888877777777654 445677777888888888888888888877
Q ss_pred HhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCC---CC--------CCHHHHHHHHHHHhhcCCHHHHHHHHHH
Q 011323 366 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG---LC--------PNTITYSILLVACERKDDVEVGLMLLSQ 434 (488)
Q Consensus 366 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~--------p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 434 (488)
.+.. +.+..++..+..+|...|++++|...++++.+.. .. .+...|..+..++...|+.+.+.++.++
T Consensus 274 l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 274 LEIQ-PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 7654 3457777777788888888888888888776421 00 1256777888888888888877776654
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.80 E-value=2.5e-18 Score=154.58 Aligned_cols=293 Identities=15% Similarity=0.132 Sum_probs=131.4
Q ss_pred hHHHHHHHH-hcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHhcC
Q 011323 28 QLHSYNRLI-RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSK 106 (488)
Q Consensus 28 ~~~~~~~l~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~ 106 (488)
+...++.|+ +.|++++|.+.++++.. | .....++..+...|++++|++.|.+. +|...|..++..+...|
T Consensus 5 ~~~a~~~ll~~~~~ld~A~~fae~~~~----~---~vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g 75 (449)
T 1b89_A 5 NTSAVQVLIEHIGNLDRAYEFAERCNE----P---AVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSG 75 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cHHHHHHHHHHccCHHHHHHHHHhCCC----h---HHHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCC
Confidence 344566677 67889999999998832 1 25567888999999999999999775 57779999999999999
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 011323 107 DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYG 186 (488)
Q Consensus 107 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 186 (488)
++++|+..++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+...|...|++++|...|.
T Consensus 76 ~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~ 146 (449)
T 1b89_A 76 NWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYN 146 (449)
T ss_dssp -----------------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHH
T ss_pred CHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999977766653 4557888899999999999999988884 4677899999999999999999999999
Q ss_pred HHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 011323 187 IMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 266 (488)
Q Consensus 187 ~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 266 (488)
.+ ..|..++.++.+.|++++|.+.+..+. +..+|..++.+|...|+++.|...... +.
T Consensus 147 ~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA~--------~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~ 204 (449)
T 1b89_A 147 NV---------SNFGRLASTLVHLGEYQAAVDGARKAN--------STRTWKEVCFACVDGKEFRLAQMCGLH-----IV 204 (449)
T ss_dssp HT---------TCHHHHHHHHHTTTCHHHHHHHHHHHT--------CHHHHHHHHHHHHHTTCHHHHHHTTTT-----TT
T ss_pred Hh---------hhHHHHHHHHHHhccHHHHHHHHHHcC--------CchhHHHHHHHHHHcCcHHHHHHHHHH-----HH
Confidence 76 478899999999999999999999872 456899999999999999999554443 33
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCc------cH
Q 011323 267 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN-QGISV------GI 339 (488)
Q Consensus 267 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~------~~ 339 (488)
..+.-...++..|.+.|.+++|..+++...... +-....|+-+.-.|++- +++...+.++.... .+++| +.
T Consensus 205 ~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~ 282 (449)
T 1b89_A 205 VHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQA 282 (449)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTT
T ss_pred hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 455556678899999999999999999988665 33566777776666654 34444444433332 22222 35
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHH
Q 011323 340 ISYSSLMGACSNAKNWQKALELY 362 (488)
Q Consensus 340 ~~~~~l~~~~~~~g~~~~a~~~~ 362 (488)
..|..++..|.+.++++.|..+.
T Consensus 283 ~~w~e~~~ly~~~~e~d~A~~tm 305 (449)
T 1b89_A 283 HLWAELVFLYDKYEEYDNAIITM 305 (449)
T ss_dssp TCHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhhchHHHHHHHH
Confidence 56888888999999999887654
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.80 E-value=3.7e-17 Score=147.44 Aligned_cols=227 Identities=11% Similarity=0.007 Sum_probs=97.2
Q ss_pred HHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccC
Q 011323 132 TLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG 211 (488)
Q Consensus 132 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 211 (488)
.+...+...|++++|.++|+++.+.. +.+..++..+...+...|++++|...++++.... +.+..++..+...+...|
T Consensus 26 ~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~ 103 (327)
T 3cv0_A 26 EEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEH 103 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHHcC
Confidence 33344444444444444444444332 2233344444444444444444444444444332 223344444444444444
Q ss_pred CHHHHHHHHHHHhhCCCCCCCCcchHHHH--------------HH-HHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 011323 212 AVDRAFDVLAEMNAEVHPVDPDHITIGAL--------------MK-ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAI 276 (488)
Q Consensus 212 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 276 (488)
++++|.+.++++....+ .+...+..+ .. .+...|++++|...++.+.+.. +.+...+..+.
T Consensus 104 ~~~~A~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 179 (327)
T 3cv0_A 104 NANAALASLRAWLLSQP---QYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLG 179 (327)
T ss_dssp CHHHHHHHHHHHHHTST---TTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCC---ccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHH
Confidence 44444444444443210 011111111 11 1344455555555555555443 33444555555
Q ss_pred HHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHH
Q 011323 277 NCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 356 (488)
Q Consensus 277 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 356 (488)
..+...|++++|...++++.+.... +..++..+...+...|++++|...++++.+.. +.+...+..+...+...|+++
T Consensus 180 ~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~ 257 (327)
T 3cv0_A 180 VLYNLSNNYDSAAANLRRAVELRPD-DAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYD 257 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHH
Confidence 5555555555555555554443221 33444444444444444444444444444432 223344444444444444444
Q ss_pred HHHHHHHHHH
Q 011323 357 KALELYEHMK 366 (488)
Q Consensus 357 ~a~~~~~~~~ 366 (488)
+|...++++.
T Consensus 258 ~A~~~~~~a~ 267 (327)
T 3cv0_A 258 LAAKQLVRAI 267 (327)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444444443
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.80 E-value=6.2e-17 Score=146.01 Aligned_cols=267 Identities=8% Similarity=-0.094 Sum_probs=215.5
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 011323 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALID 170 (488)
Q Consensus 91 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 170 (488)
+...+..+...+...|++++|+.+++.+.+.. +.+..++..+..++...|++++|.+.++++.+.. +.+..++..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHH
Confidence 33456677778888999999999999888764 5577888888999999999999999999988764 446788888999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHH--------------HH-HHHccCCHHHHHHHHHHHhhCCCCCCCCcc
Q 011323 171 GCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL--------------IT-ACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 235 (488)
Q Consensus 171 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------l~-~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 235 (488)
.+...|++++|.+.++++.... +.+...+..+ .. .+...|++++|...++++.... +.+..
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~ 173 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN---PNDAQ 173 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS---TTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC---CCCHH
Confidence 9999999999999999988763 2233333333 22 3777899999999999988742 23556
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 011323 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 315 (488)
Q Consensus 236 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 315 (488)
.+..+...+...|++++|...++.+.+.. +.+..++..+...+...|++++|...+++..+.... +...+..+...+.
T Consensus 174 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~ 251 (327)
T 3cv0_A 174 LHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDINPG-YVRVMYNMAVSYS 251 (327)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHH
Confidence 78888999999999999999999998875 567889999999999999999999999998886543 6788999999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCc-----------cHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011323 316 HAGKVEAAFEILQEAKNQGISV-----------GIISYSSLMGACSNAKNWQKALELYEHM 365 (488)
Q Consensus 316 ~~g~~~~a~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 365 (488)
..|++++|...++++.+..... +...+..+..++...|++++|..++++.
T Consensus 252 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 252 NMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 9999999999999988754221 4778888888999999999988887644
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.80 E-value=2.3e-18 Score=154.87 Aligned_cols=283 Identities=13% Similarity=0.153 Sum_probs=137.0
Q ss_pred hhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHH
Q 011323 72 KSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFH 151 (488)
Q Consensus 72 ~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 151 (488)
...|++++|.++++++..| .+|..+..++.+.|++++|++.|.+ .+|..+|..++..+...|++++|.+.++
T Consensus 14 ~~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 3567799999999999655 5999999999999999999999965 3577799999999999999999999888
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCC
Q 011323 152 EMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD 231 (488)
Q Consensus 152 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 231 (488)
...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|.+++|...|..+
T Consensus 86 ~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-------- 148 (449)
T 1b89_A 86 MARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-------- 148 (449)
T ss_dssp -------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT--------
T ss_pred HHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh--------
Confidence 77764 5567889999999999999999988884 367789999999999999999999999976
Q ss_pred CCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 011323 232 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 311 (488)
Q Consensus 232 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 311 (488)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+ ...+.....++
T Consensus 149 ---~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~~lv 214 (449)
T 1b89_A 149 ---SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELI 214 (449)
T ss_dssp ---TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHHHHH
T ss_pred ---hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHHHHH
Confidence 27899999999999999999999988 26789999999999999999996655442 22444466789
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCCC------CHHHHHHHHHH
Q 011323 312 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA--KNWQKALELYEHMKSIKLKP------TVSTMNALITA 383 (488)
Q Consensus 312 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~ 383 (488)
..|.+.|++++|..+++...... +-....|+-+..+|++- ++..+..+.|.. +.+++| +...|..++..
T Consensus 215 ~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--~ini~k~~~~~~~~~~w~e~~~l 291 (449)
T 1b89_A 215 NYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS--RVNIPKVLRAAEQAHLWAELVFL 291 (449)
T ss_dssp HHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST--TSCHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988765 55677888887777764 345555555542 223333 45678999999
Q ss_pred HHcCCChhHHHHH
Q 011323 384 LCDGDQLPKTMEV 396 (488)
Q Consensus 384 ~~~~~~~~~a~~~ 396 (488)
|...++++.|...
T Consensus 292 y~~~~e~d~A~~t 304 (449)
T 1b89_A 292 YDKYEEYDNAIIT 304 (449)
T ss_dssp HHHTTCHHHHHHH
T ss_pred HHhhchHHHHHHH
Confidence 9999999988764
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.2e-16 Score=150.25 Aligned_cols=213 Identities=10% Similarity=-0.032 Sum_probs=120.5
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHhhhCC------------CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC------
Q 011323 61 KVYHARFFNVCKSQKAIKEAFRFFKLVP------------NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAG------ 122 (488)
Q Consensus 61 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------ 122 (488)
...+..++.++...|+.++|++.|++.. +....+|+.+..+|...|++++|...+++..+..
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 4455566677777777777777776431 1234567777777777777777777776654320
Q ss_pred -CCCCHHHHHHHHHHHHHc--CCHhHHHHHHHHHHHcCCCCCHHHHHHHHHH---HHhcCCHHHHHHHHHHHHhCCCCCC
Q 011323 123 -LKADCKLYTTLITTCAKS--GKVDAMFEVFHEMVNAGIEPNVHTYGALIDG---CAKAGQVAKAFGAYGIMRSKNVKPD 196 (488)
Q Consensus 123 -~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~~~~ 196 (488)
......++..+..++... +++++|++.|++..+.. +-+...+..+..+ +...++.++|++.+++..+.. +.+
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~ 208 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDN 208 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSC
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Ccc
Confidence 011234555555455443 35677777777776653 2234444444433 234456666777776666543 334
Q ss_pred HhHHHHHHHHHHc----cCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHH
Q 011323 197 RVVFNALITACGQ----SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 272 (488)
Q Consensus 197 ~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 272 (488)
..++..+...+.. .|++++|.+.+++..... +.+..++..+...+...|++++|...++.+.+.. +.+..++
T Consensus 209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~---~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~ 284 (472)
T 4g1t_A 209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA---PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLH 284 (472)
T ss_dssp HHHHHHHHHHHHHCC------CHHHHHHHHHHHHC---SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC---ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHH
Confidence 4445444444333 345667777777665531 2233456666677777777777777777776654 4455566
Q ss_pred HHHHHHH
Q 011323 273 TIAINCC 279 (488)
Q Consensus 273 ~~l~~~~ 279 (488)
..+..+|
T Consensus 285 ~~lg~~y 291 (472)
T 4g1t_A 285 CQIGCCY 291 (472)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555544
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.78 E-value=3.1e-14 Score=143.10 Aligned_cols=376 Identities=14% Similarity=0.179 Sum_probs=270.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCchHHHHHHHHHHHhhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHhcCC
Q 011323 29 LHSYNRLIRQGRISECIDLLEDMERKGL-LDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKD 107 (488)
Q Consensus 29 ~~~~~~l~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~ 107 (488)
-.+...++..|.+.+|+++++.+...+- +..+......++....+. +..+..++.++....+ ...+...+...|.
T Consensus 989 s~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~Iai~lgl 1064 (1630)
T 1xi4_A 989 SVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIANIAISNEL 1064 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHHHHHhCCC
Confidence 3455667799999999999999984431 123444444444333332 3344444444433222 4447788889999
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011323 108 SEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGI 187 (488)
Q Consensus 108 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 187 (488)
+++|..+|++.. -.....+.++. ..+++++|.++.++.. +..+|..+..++...|++++|.+.|.+
T Consensus 1065 yEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~kEAIdsYiK 1130 (1630)
T 1xi4_A 1065 FEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIK 1130 (1630)
T ss_pred HHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 999999999852 12223333332 7788999999988652 578899999999999999999999966
Q ss_pred HHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 011323 188 MRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 267 (488)
Q Consensus 188 ~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 267 (488)
. -|...|..++.++.+.|++++|.+.|...... .++......++.+|++.+++++..... + .+
T Consensus 1131 A------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~----~~e~~Idt~LafaYAKl~rleele~fI----~---~~ 1193 (1630)
T 1xi4_A 1131 A------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK----ARESYVETELIFALAKTNRLAELEEFI----N---GP 1193 (1630)
T ss_pred c------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----cccccccHHHHHHHHhhcCHHHHHHHH----h---CC
Confidence 3 37788889999999999999999999887764 233333445888899999888644332 2 34
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHH
Q 011323 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 347 (488)
Q Consensus 268 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 347 (488)
+...+..+...|...|++++|...|... ..|..+...+.+.|+++.|.+.+++. .+..+|..+..
T Consensus 1194 n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~ 1258 (1630)
T 1xi4_A 1194 NNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCF 1258 (1630)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHH
Confidence 5566777999999999999999999985 36899999999999999999999876 35688999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhh--cCCH
Q 011323 348 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER--KDDV 425 (488)
Q Consensus 348 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~--~g~~ 425 (488)
+|...|++..|......+ ..++..+..++..|.+.|.+++|+.+++..+... +-....|+-+...+++ .++.
T Consensus 1259 acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~pekl 1332 (1630)
T 1xi4_A 1259 ACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKM 1332 (1630)
T ss_pred HHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHH
Confidence 999999999998876643 3566778899999999999999999998877532 2234456556666555 3445
Q ss_pred HHHHHHHHHHHHcCCCC------cHHHHHHHHHHHhh--cHHHHH
Q 011323 426 EVGLMLLSQAKEDGVIP------NLVMFKCIIGMCSR--RYEKAR 462 (488)
Q Consensus 426 ~~a~~~~~~~~~~~~~~------~~~~~~~li~~~~~--~~~~a~ 462 (488)
.++.++|..-. +++| +...|..++..|.+ ++++|.
T Consensus 1333 mEhlk~f~~ri--ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A 1333 REHLELFWSRV--NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred HHHHHHHHHhc--ccchHhHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 55555554222 2332 45567777777765 566665
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.8e-16 Score=138.42 Aligned_cols=246 Identities=12% Similarity=0.067 Sum_probs=117.7
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCH--hHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCCHH
Q 011323 174 KAGQVAKAFGAYGIMRSKNVKPDR--VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD 251 (488)
Q Consensus 174 ~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 251 (488)
..|+++.|+..++..... .|+. .....+.++|...|+++.|+..++.. -+|+..++..+...+...++.+
T Consensus 11 ~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~------~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 11 YIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKPS------SAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT------SCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhccc------CChhHHHHHHHHHHHcCCCcHH
Confidence 345555555554443322 2221 22233445555555555554433220 1233344444445555555555
Q ss_pred HHHHHHHHHHhcCC-CCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011323 252 RAREVYKMIHKYNI-KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 330 (488)
Q Consensus 252 ~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 330 (488)
+|.+.++.+...+. +.++..+..+...+...|++++|++.+++ ..+...+..++..+.+.|++++|.+.++.+
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 156 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKM 156 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 55555555544332 22344444444555555555555555544 224445555555555555555555555555
Q ss_pred HHCCCCccHH---HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCC
Q 011323 331 KNQGISVGII---SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 407 (488)
Q Consensus 331 ~~~~~~~~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p 407 (488)
.+.. |+.. ....++..+...|++++|..+|+++.+.. +.+...++.+..++.+.|++++|...+++..+.. +-
T Consensus 157 ~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~ 232 (291)
T 3mkr_A 157 QDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SG 232 (291)
T ss_dssp HHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred HhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC
Confidence 5443 2211 01112222333455566666665555442 3455555555555666666666666666555431 22
Q ss_pred CHHHHHHHHHHHhhcCCHHH-HHHHHHHHHH
Q 011323 408 NTITYSILLVACERKDDVEV-GLMLLSQAKE 437 (488)
Q Consensus 408 ~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~ 437 (488)
+..++..++..+...|+.++ +.++++++.+
T Consensus 233 ~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 233 HPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 45555555555555555543 3455555554
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=7.2e-18 Score=163.79 Aligned_cols=151 Identities=13% Similarity=0.210 Sum_probs=126.9
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHH---HcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHH
Q 011323 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQ---EAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGA 167 (488)
Q Consensus 91 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 167 (488)
-..+||++|++|++.|+.++|.++|+.|. ..|+.||..|||.||.+|++.|++++|.++|++|.+.|+.||..|||+
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 34589999999999999999999998876 458899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCC-HHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCC------cchHHHH
Q 011323 168 LIDGCAKAGQ-VAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD------HITIGAL 240 (488)
Q Consensus 168 l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~------~~~~~~l 240 (488)
+|.++++.|+ .+.|.++|++|.+.|+.||..+|+.++....+. .+++.++++. +++.|+ ..+...|
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv~---P~f~p~~~~~~~~~t~~LL 278 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKVK---PTFSLPPQLPPPVNTSKLL 278 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGGC---CCCCCCCCCCCCCCCCTTT
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHhC---cccCCCCCCcccccchHHH
Confidence 9999999998 588999999999999999999999998665443 3334444442 233333 4555667
Q ss_pred HHHHHhcC
Q 011323 241 MKACANAG 248 (488)
Q Consensus 241 ~~~~~~~~ 248 (488)
.+.|.+.+
T Consensus 279 ~dl~s~d~ 286 (1134)
T 3spa_A 279 RDVYAKDG 286 (1134)
T ss_dssp HHHHCCCS
T ss_pred HHHHccCC
Confidence 77777655
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.1e-15 Score=145.34 Aligned_cols=376 Identities=10% Similarity=-0.054 Sum_probs=229.6
Q ss_pred HHhcCCHHHHHHHHHHHHHC-------CCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCC-----------CCCHHHHH
Q 011323 35 LIRQGRISECIDLLEDMERK-------GLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP-----------NPTLSTFN 96 (488)
Q Consensus 35 l~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----------~~~~~~~~ 96 (488)
+...|++++|++.|++..+. ...+.....+..++.++...|++++|...++++. .....++.
T Consensus 61 ~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~ 140 (472)
T 4g1t_A 61 KHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDC 140 (472)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHH
Confidence 34799999999999987643 1124456677788899999999999999887642 12345666
Q ss_pred HHHHHHHh--cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH---HHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 011323 97 MLMSVCAS--SKDSEGAFQVLRLVQEAGLKADCKLYTTLITT---CAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDG 171 (488)
Q Consensus 97 ~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 171 (488)
.+..++.. .+++++|++.|++..+.. |.+...+..+..+ +...++.++|++.+++..+.. +.+..++..+...
T Consensus 141 ~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~ 218 (472)
T 4g1t_A 141 EEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALK 218 (472)
T ss_dssp HHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHH
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHH
Confidence 65555544 457999999999998864 4456666555554 445678889999999988764 3456666666655
Q ss_pred HHh----cCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCC-cchHHHHHHHHHh
Q 011323 172 CAK----AGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD-HITIGALMKACAN 246 (488)
Q Consensus 172 ~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~ 246 (488)
+.. .+++++|.+.+++..... +.+..++..+...+...|++++|...+++.... .|+ ..++..+..+|..
T Consensus 219 ~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~lg~~y~~ 293 (472)
T 4g1t_A 219 LHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY----IPNNAYLHCQIGCCYRA 293 (472)
T ss_dssp HHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----STTCHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh----CCChHHHHHHHHHHHHH
Confidence 554 467889999999988764 556788899999999999999999999998874 343 3445555544432
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 011323 247 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326 (488)
Q Consensus 247 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 326 (488)
.+... .... .. .........+.++.|...+++..+.... +...+..+...+...|++++|...
T Consensus 294 ~~~~~---------~~~~-~~------~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~ 356 (472)
T 4g1t_A 294 KVFQV---------MNLR-EN------GMYGKRKLLELIGHAVAHLKKADEANDN-LFRVCSILASLHALADQYEEAEYY 356 (472)
T ss_dssp HHHHH---------HHC-------------CHHHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHh---------hhHH-HH------HHHHHHHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhHHHHHHHhccHHHHHHH
Confidence 21110 0000 00 0000111122356777777777665432 445567777888888888888888
Q ss_pred HHHHHHCCCCccHH--HHHHHHH-HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhC
Q 011323 327 LQEAKNQGISVGII--SYSSLMG-ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL 403 (488)
Q Consensus 327 ~~~~~~~~~~~~~~--~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 403 (488)
|++..+....+... .+..+.. .....|+.++|+..|++..+.. |+...... ....+.++++...+.
T Consensus 357 ~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~--~~~~~~~~---------~~~~l~~~~~~~l~~ 425 (472)
T 4g1t_A 357 FQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKIN--QKSREKEK---------MKDKLQKIAKMRLSK 425 (472)
T ss_dssp HHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSC--CCCHHHHH---------HHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHHH---------HHHHHHHHHHHHHHh
Confidence 88887765333221 2222222 2346788888888888887653 43322221 123344555555543
Q ss_pred CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcC-CCCcHHH
Q 011323 404 GLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDG-VIPNLVM 446 (488)
Q Consensus 404 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~ 446 (488)
. +.+..+|..+...+...|++++|++.|+++++.+ ..|+..+
T Consensus 426 ~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~ 468 (472)
T 4g1t_A 426 N-GADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASS 468 (472)
T ss_dssp C-C-CTTHHHHHHHHHHHHHHCC---------------------
T ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhh
Confidence 2 4567788888888888899999999998888763 3354443
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=7.4e-18 Score=163.71 Aligned_cols=121 Identities=17% Similarity=0.186 Sum_probs=96.5
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHh---CCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHH
Q 011323 336 SVGIISYSSLMGACSNAKNWQKALELYEHMKS---IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY 412 (488)
Q Consensus 336 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~ 412 (488)
.....+|+++|.+|++.|++++|.++|++|.+ .|+.||..+||+||.+|++.|++++|.++|++|.+.|+.||..||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 44456788888888888888888888877653 467788888888888888888888888888888888888888888
Q ss_pred HHHHHHHhhcCC-HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhh
Q 011323 413 SILLVACERKDD-VEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 456 (488)
Q Consensus 413 ~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 456 (488)
+++|.++++.|+ .++|.++|++|.+.|+.||..+|++++....+
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR 248 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH
Confidence 888888888887 46778888888888888888888888766543
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.74 E-value=9.1e-14 Score=139.80 Aligned_cols=312 Identities=13% Similarity=0.134 Sum_probs=235.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHhcCChhHH
Q 011323 32 YNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGA 111 (488)
Q Consensus 32 ~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 111 (488)
...++..|.+++|..+|+..... .. .+..+....+++++|.++++++. ++.+|..+..++...|++++|
T Consensus 1056 A~Iai~lglyEEAf~IYkKa~~~----~~-----A~~VLie~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEA 1124 (1630)
T 1xi4_A 1056 ANIAISNELFEEAFAIFRKFDVN----TS-----AVQVLIEHIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEA 1124 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHcCCH----HH-----HHHHHHHHHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHH
Confidence 45566899999999999986311 11 11122335678999999998874 467888999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011323 112 FQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK 191 (488)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 191 (488)
++.|.+. .|...|..++.++.+.|++++|.+.+....+.. +++...+.++.+|++.++++..... ..
T Consensus 1125 IdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~f----I~- 1191 (1630)
T 1xi4_A 1125 IDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEF----IN- 1191 (1630)
T ss_pred HHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHH----Hh-
Confidence 9998553 477888889999999999999999998877653 4444444588889999888854333 22
Q ss_pred CCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHH
Q 011323 192 NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 271 (488)
Q Consensus 192 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 271 (488)
.++...|..+...|...|++++|..+|... ..|..+...+.+.|+++.|.+.+++. .+..+
T Consensus 1192 --~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~a 1252 (1630)
T 1xi4_A 1192 --GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRT 1252 (1630)
T ss_pred --CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHH
Confidence 346677778889999999999999999885 27888999999999999999999877 34578
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHh
Q 011323 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 351 (488)
Q Consensus 272 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 351 (488)
|..+..+|...|++..|......+ ..+...+..++..|.+.|.+++|+.+++...... +-....|.-+...|++
T Consensus 1253 Wkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaK 1326 (1630)
T 1xi4_A 1253 WKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSK 1326 (1630)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHh
Confidence 888888899999988888766542 2356667788999999999999999998877654 4455667666666665
Q ss_pred c--CCHHHHHHHHHHHHhCCCCC------CHHHHHHHHHHHHcCCChhHHH
Q 011323 352 A--KNWQKALELYEHMKSIKLKP------TVSTMNALITALCDGDQLPKTM 394 (488)
Q Consensus 352 ~--g~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~ 394 (488)
. ++..++.+.|..-. +++| +...|..++..|.+.|+++.|.
T Consensus 1327 y~peklmEhlk~f~~ri--ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A 1327 FKPQKMREHLELFWSRV--NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred CCHHHHHHHHHHHHHhc--ccchHhHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 3 45556666665432 2222 5677889999999999999888
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.4e-15 Score=143.01 Aligned_cols=346 Identities=11% Similarity=0.024 Sum_probs=195.0
Q ss_pred hhHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHH---HHHHHHhhhCCCCCHHHHHHHHHHHH
Q 011323 27 EQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI---KEAFRFFKLVPNPTLSTFNMLMSVCA 103 (488)
Q Consensus 27 ~~~~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~A~~~~~~~~~~~~~~~~~l~~~~~ 103 (488)
|.......+.+.|++++|++.|++..+.+. .... ..++.++...|+. ++|++.|++..+.++..+..+...+.
T Consensus 5 p~~~la~~~~~~g~~~~A~~~~~~aa~~g~--~~A~--~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~ 80 (452)
T 3e4b_A 5 PDQRLANEALKRGDTVTAQQNYQQLAELGY--SEAQ--VGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLA 80 (452)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHTC--CTGG--GTCC----------------------------CHHHHHHHHH
T ss_pred chHHHHHHHHhCCCHHHHHHHHHHHHHCCC--HHHH--HHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 346677788899999999999999988762 2222 2344444556666 89999998887667777777777555
Q ss_pred hcC-----ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhH---HHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 011323 104 SSK-----DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA---MFEVFHEMVNAGIEPNVHTYGALIDGCAKA 175 (488)
Q Consensus 104 ~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 175 (488)
..+ ++++|+..|+...+.|. + ..+..|...|...+..++ +.+.+......| +......+...|...
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~g~-~--~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~ 154 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFANGE-G--NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQ 154 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHTTC-S--SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHH
T ss_pred hCCCCCCcCHHHHHHHHHHHHHCCC-H--HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcC
Confidence 554 77889999988888663 2 266667777776655443 444444444433 345566666777766
Q ss_pred CCHH----HHHHHHHHHHhCCCCCCHhHHHHHHHHHHccC---CHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhc-
Q 011323 176 GQVA----KAFGAYGIMRSKNVKPDRVVFNALITACGQSG---AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA- 247 (488)
Q Consensus 176 ~~~~----~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 247 (488)
+.++ .+..+++.... .++..+..+...|...| +.++|++.|+.....+ .++...+..+...|...
T Consensus 155 ~~~~~~~~~a~~~~~~a~~----~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g---~~~a~~~~~Lg~~y~~g~ 227 (452)
T 3e4b_A 155 GTYDQHLDDVERICKAALN----TTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG---TVTAQRVDSVARVLGDAT 227 (452)
T ss_dssp TCGGGGHHHHHHHHHHHTT----TCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT---CSCHHHHHHHHHHHTCGG
T ss_pred CCcccCHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHhCCC
Confidence 6443 33333433332 23336667777777777 7777777777776642 23333334455555443
Q ss_pred ---CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH-H--HccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---
Q 011323 248 ---GQVDRAREVYKMIHKYNIKGTPEVYTIAINC-C--SQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG--- 318 (488)
Q Consensus 248 ---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--- 318 (488)
+++++|..+|+... . .++..+..+... + ...+++++|...|++..+.| +...+..+...|. .|
T Consensus 228 ~~~~d~~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~ 299 (452)
T 3e4b_A 228 LGTPDEKTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWV 299 (452)
T ss_dssp GSSCCHHHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSS
T ss_pred CCCCCHHHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCC
Confidence 57777777777766 2 234555555555 3 45677777777777777665 4555556665555 44
Q ss_pred --CHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----CC
Q 011323 319 --KVEAAFEILQEAKNQGISVGIISYSSLMGACSN----AKNWQKALELYEHMKSIKLKPTVSTMNALITALCD----GD 388 (488)
Q Consensus 319 --~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~ 388 (488)
++++|...|++.. .| ++.....+...|.. ..+.++|...|++..+.|. ......|...|.. ..
T Consensus 300 ~~d~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~ 372 (452)
T 3e4b_A 300 PADAKAAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKP 372 (452)
T ss_dssp CCCHHHHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCC
T ss_pred CCCHHHHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCC
Confidence 7777777777666 33 45566666666654 3367777777777666542 2334444444443 34
Q ss_pred ChhHHHHHHHHHHhCC
Q 011323 389 QLPKTMEVLSDMKSLG 404 (488)
Q Consensus 389 ~~~~a~~~~~~~~~~~ 404 (488)
+.++|...++...+.|
T Consensus 373 d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 373 DPLNAYVFSQLAKAQD 388 (452)
T ss_dssp CHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHCC
Confidence 6666666666666654
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.69 E-value=9e-15 Score=126.85 Aligned_cols=117 Identities=11% Similarity=0.031 Sum_probs=51.1
Q ss_pred CCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHH
Q 011323 318 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVL 397 (488)
Q Consensus 318 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 397 (488)
|++++|...++.+.... +.+...+..+...+...|++++|...++++.+.. +.+...|..+...+...|++++|+..+
T Consensus 119 ~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 196 (258)
T 3uq3_A 119 RNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADC 196 (258)
T ss_dssp HHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 33444444444443332 2223344444444444444444444444444332 223444444444444444444444444
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 011323 398 SDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (488)
Q Consensus 398 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 437 (488)
++..+.. +.+...+..+...+...|++++|...++++.+
T Consensus 197 ~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 197 NKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 4444321 22244444444445555555555555444443
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.7e-15 Score=126.25 Aligned_cols=197 Identities=15% Similarity=0.057 Sum_probs=137.0
Q ss_pred cCCCchhHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCC---CCCHHHHHHH
Q 011323 22 AHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNML 98 (488)
Q Consensus 22 ~~~~~~~~~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l 98 (488)
|.+..........+.+.|++++|+..|++.++.+ |.+...+..++..+...|++++|+..|+++. +.+...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN--PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS--SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 4445556666677778888888888888888876 7777777788888888888888888887654 4566777777
Q ss_pred HHHHHhc-----------CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHH
Q 011323 99 MSVCASS-----------KDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGA 167 (488)
Q Consensus 99 ~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 167 (488)
..++... |++++|+..++...+.. +.+...+..+..++...|++++|++.|++..+.. .+...+..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHH
Confidence 7788777 88888888887777664 4456777777777888888888888888877765 56777777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHh
Q 011323 168 LIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMN 224 (488)
Q Consensus 168 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 224 (488)
+..+|...|++++|+..|++..+.. +.+...+..+..++...|++++|...+++..
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 7888888888888888888777653 3456677777777777888888777776653
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.6e-14 Score=125.21 Aligned_cols=228 Identities=13% Similarity=0.036 Sum_probs=192.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCC----cchH
Q 011323 162 VHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD----HITI 237 (488)
Q Consensus 162 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~ 237 (488)
...+..+...+...|++++|...|++..+.. .+...+..+..++...|++++|...+++.....+...++ ..++
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 5678888999999999999999999998886 788899999999999999999999999987642222222 3678
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 011323 238 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 317 (488)
Q Consensus 238 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 317 (488)
..+...+...|++++|...++.+.... |+. ..+.+.|++++|...++++...... +...+..+...+...
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVNPE-KAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHh
Confidence 888899999999999999999998864 443 4466678899999999998886433 567788888899999
Q ss_pred CCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHH
Q 011323 318 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVL 397 (488)
Q Consensus 318 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 397 (488)
|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...|..+...+...|++++|...+
T Consensus 153 ~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 230 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETL 230 (258)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 99999999999998875 4468889999999999999999999999998765 456888999999999999999999999
Q ss_pred HHHHhC
Q 011323 398 SDMKSL 403 (488)
Q Consensus 398 ~~~~~~ 403 (488)
++..+.
T Consensus 231 ~~a~~~ 236 (258)
T 3uq3_A 231 DAARTK 236 (258)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 998763
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.69 E-value=5.5e-15 Score=124.35 Aligned_cols=196 Identities=13% Similarity=-0.056 Sum_probs=104.9
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 011323 235 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 314 (488)
Q Consensus 235 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 314 (488)
..+..+...+...|++++|...|+...+.. +.++..+..+...+.+.|++++|...+++..+..+. +...+..+..++
T Consensus 6 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~ 83 (217)
T 2pl2_A 6 QNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMVLSEAY 83 (217)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHH
Confidence 344444445555555555555555555443 334455555555555555555555555555544322 344455555555
Q ss_pred Hhc-----------CCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 011323 315 GHA-----------GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA 383 (488)
Q Consensus 315 ~~~-----------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 383 (488)
... |++++|+..+++..+.. +.+...+..+..++...|++++|...|++..+.. .+...+..+..+
T Consensus 84 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~ 160 (217)
T 2pl2_A 84 VALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAEL 160 (217)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHH
T ss_pred HHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHH
Confidence 555 66666766666666653 2345666666666667777777777777666555 556666666666
Q ss_pred HHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 011323 384 LCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAK 436 (488)
Q Consensus 384 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 436 (488)
|...|++++|+..+++..+.. +.+...+..+...+...|++++|...+++..
T Consensus 161 ~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 161 YLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 777777777777777666531 3345566666666677777777766665543
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.69 E-value=8.1e-15 Score=137.74 Aligned_cols=372 Identities=11% Similarity=-0.017 Sum_probs=246.8
Q ss_pred HHHHHhhhHHHHHHHHHhhhCCC-CCHHHHHHHHHHHHhcCCh---hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-
Q 011323 67 FFNVCKSQKAIKEAFRFFKLVPN-PTLSTFNMLMSVCASSKDS---EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG- 141 (488)
Q Consensus 67 l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~- 141 (488)
+...+.+.|++++|+++|++..+ .+...+..+...+...|+. ++|++.|+...+. ++..+..+...+...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~~ 84 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKPG 84 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCTGGGTCC--------------------------------CHHHHHHHHHTC--
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCCC
Confidence 45667778999999999987642 3455566666677777888 8999999988753 5556666766555554
Q ss_pred ----CHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCC--
Q 011323 142 ----KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQV---AKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA-- 212 (488)
Q Consensus 142 ----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~-- 212 (488)
+.++|.+.|++..+.|. ...+..|...|...+.. ..+.+.+......| +......+...|...+.
T Consensus 85 ~~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~ 158 (452)
T 3e4b_A 85 ATEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYD 158 (452)
T ss_dssp CCHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGG
T ss_pred CCCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcc
Confidence 78899999999998763 23667777777765543 34556666665555 34566677777777774
Q ss_pred --HHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcc----C
Q 011323 213 --VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG---QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT----G 283 (488)
Q Consensus 213 --~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~ 283 (488)
.+.+..+++..... .|+ .+..+...|...| +.++|...|+...+.+ +++...+..+...|... +
T Consensus 159 ~~~~~a~~~~~~a~~~----~~~--a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~ 231 (452)
T 3e4b_A 159 QHLDDVERICKAALNT----TDI--CYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTP 231 (452)
T ss_dssp GGHHHHHHHHHHHTTT----CTT--HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSC
T ss_pred cCHHHHHHHHHHHHcC----CHH--HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCC
Confidence 44555555554432 343 7888888899999 9999999999999987 56666667777777665 7
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcC-----CH
Q 011323 284 DWEFACSVYDDMTKKGVIPDEVFLSALIDF-A--GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK-----NW 355 (488)
Q Consensus 284 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~ 355 (488)
++++|...|++.. .| +...+..+... + ...+++++|...|++..+.| ++..+..+...|. .| ++
T Consensus 232 d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~ 303 (452)
T 3e4b_A 232 DEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADA 303 (452)
T ss_dssp CHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCH
T ss_pred CHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCH
Confidence 9999999999988 43 44556666665 4 56899999999999999887 6777888888887 55 99
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----CCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhh----cCCHHH
Q 011323 356 QKALELYEHMKSIKLKPTVSTMNALITALCD----GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER----KDDVEV 427 (488)
Q Consensus 356 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~ 427 (488)
++|...|++.. +.+...+..|...|.. ..++++|...|++..+.|. ......|...|.. ..+.++
T Consensus 304 ~~A~~~~~~Aa----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~ 376 (452)
T 3e4b_A 304 KAAEAHFEKAV----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLN 376 (452)
T ss_dssp HHHHHHHHTTT----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHH
T ss_pred HHHHHHHHHHh----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHH
Confidence 99999999877 3466777778877776 4489999999999998763 3344556656653 568999
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHhh-cHHHHHHHHHHhhh
Q 011323 428 GLMLLSQAKEDGVIPNLVMFKCIIGMCSR-RYEKARTLNEHVLS 470 (488)
Q Consensus 428 a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~~~~a~~~~~~~~~ 470 (488)
|..+|+...+.|..........+...... +..+|..+.+..+.
T Consensus 377 A~~~~~~A~~~g~~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 377 AYVFSQLAKAQDTPEANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 99999999988754322222222211111 56666666655443
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.65 E-value=5.7e-14 Score=122.90 Aligned_cols=125 Identities=13% Similarity=0.094 Sum_probs=49.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCc--chHHHHHHHHHh
Q 011323 169 IDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH--ITIGALMKACAN 246 (488)
Q Consensus 169 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~ 246 (488)
...+...|++++|+..|++..+.. +.+...+..+..++...|++++|+..+++.... +..++. ..+..+...+..
T Consensus 10 a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~lg~~~~~ 86 (272)
T 3u4t_A 10 ADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSK--VNATKAKSADFEYYGKILMK 86 (272)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTT--SCTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--cCchhHHHHHHHHHHHHHHH
Confidence 334444444444444444444332 122233444444444444444444444444331 111111 113334444444
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHh
Q 011323 247 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 297 (488)
Q Consensus 247 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 297 (488)
.|++++|...++...+.. +.+..++..+...+...|++++|...+++..+
T Consensus 87 ~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 136 (272)
T 3u4t_A 87 KGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIR 136 (272)
T ss_dssp TTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCC
T ss_pred cccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence 444444444444444332 22333444444444444444444444444333
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.64 E-value=1.5e-13 Score=118.66 Aligned_cols=200 Identities=12% Similarity=0.042 Sum_probs=137.8
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 011323 235 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 314 (488)
Q Consensus 235 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 314 (488)
..+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|.+.++++.+.... +...+..+...+
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~ 115 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR-NARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHHH
Confidence 345556666667777777777777766654 445666777777777777777777777776665432 566667777777
Q ss_pred HhcCCHHHHHHHHHHHHHCCC-CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHH
Q 011323 315 GHAGKVEAAFEILQEAKNQGI-SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 393 (488)
Q Consensus 315 ~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 393 (488)
...|++++|.+.++++.+.+. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHH
Confidence 777777777777777766222 2245666777777777777777777777776654 34566777777777777888888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHc
Q 011323 394 MEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 438 (488)
Q Consensus 394 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 438 (488)
...++++.+.. +.+...+..+...+...|++++|.++++++.+.
T Consensus 195 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 195 RQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 87777776642 445666777777777778888888877777764
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.63 E-value=9.4e-15 Score=128.10 Aligned_cols=223 Identities=11% Similarity=-0.047 Sum_probs=111.8
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 011323 93 STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGC 172 (488)
Q Consensus 93 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 172 (488)
.++..+...+...|++++|+..|+.+.+.. +.+..++..+...+...|++++|.+.|++..+.. +.+..++..+...|
T Consensus 44 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~ 121 (275)
T 1xnf_A 44 QLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIAL 121 (275)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-ccccHHHHHHHHHH
Confidence 344445555555555555555555555443 3345555555555555566666666665555542 22445555555555
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCCHHH
Q 011323 173 AKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR 252 (488)
Q Consensus 173 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 252 (488)
...|++++|...|+++.+. .|+.......+..+...|++++|...+++..... +++... ..++..+...++.++
T Consensus 122 ~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~ 195 (275)
T 1xnf_A 122 YYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS---DKEQWG-WNIVEFYLGNISEQT 195 (275)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS---CCCSTH-HHHHHHHTTSSCHHH
T ss_pred HHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC---CcchHH-HHHHHHHHHhcCHHH
Confidence 6666666666666555544 2332223333333344456666666665544421 122222 234445555555556
Q ss_pred HHHHHHHHHhcCCC---CCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 011323 253 AREVYKMIHKYNIK---GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327 (488)
Q Consensus 253 a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 327 (488)
|...+......... .+..++..+...+.+.|++++|...|++..+..+. +. .....++...|++++|++.+
T Consensus 196 a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~---~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 196 LMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVH-NF---VEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCT-TC---HHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCch-hH---HHHHHHHHHHHHHHhhHHHH
Confidence 66665555433211 11355666666666667777777777666654321 21 12233445556666665554
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.63 E-value=2.6e-14 Score=125.26 Aligned_cols=245 Identities=10% Similarity=-0.029 Sum_probs=117.5
Q ss_pred CChhHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 011323 106 KDSEGAFQVLRLVQEAGL---KADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAF 182 (488)
Q Consensus 106 ~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 182 (488)
|++++|++.++.+.+... +.+..++..+...+...|++++|.+.|++..+.. +.+..+|..+...+...|++++|.
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~ 97 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAY 97 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHH
Confidence 445555555555554321 1123445555555555566666666665555542 224555555555555566666666
Q ss_pred HHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011323 183 GAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 262 (488)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 262 (488)
..|++..... +.+..++..+..++...|++++|...++++... .|+.......+..+...|++++|...++....
T Consensus 98 ~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~----~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 98 EAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD----DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh----CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 6665555442 223455555555555566666666655555542 23333333333344445555566655554444
Q ss_pred cCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccH
Q 011323 263 YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP---DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGI 339 (488)
Q Consensus 263 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 339 (488)
.. +++...+ .++..+...++.++|...+.+........ +...+..+...+...|++++|...++++.+... .+.
T Consensus 173 ~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~ 249 (275)
T 1xnf_A 173 KS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNV-HNF 249 (275)
T ss_dssp HS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC-TTC
T ss_pred cC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCc-hhH
Confidence 32 2222222 24444555555555555555544332110 134455555555555666666666655555431 111
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHH
Q 011323 340 ISYSSLMGACSNAKNWQKALELY 362 (488)
Q Consensus 340 ~~~~~l~~~~~~~g~~~~a~~~~ 362 (488)
. ....++...|++++|.+.+
T Consensus 250 ~---~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 250 V---EHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp H---HHHHHHHHHHHHHHC----
T ss_pred H---HHHHHHHHHHHHHhhHHHH
Confidence 1 1233444455555554443
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.63 E-value=2.1e-13 Score=119.26 Aligned_cols=195 Identities=10% Similarity=0.022 Sum_probs=101.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCC--HHHHHHHHHHH
Q 011323 95 FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN--VHTYGALIDGC 172 (488)
Q Consensus 95 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~ 172 (488)
+......+...|++++|+..++...+.. +.+...+..+..++...|++++|.+.+++..+.+..++ ..+|..+...+
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 3344455566666666666666666543 33444566666666666666666666666665321111 22355666666
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCC-CcchHHHHHHHHHhcCCHH
Q 011323 173 AKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDP-DHITIGALMKACANAGQVD 251 (488)
Q Consensus 173 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~ 251 (488)
...|++++|+..|++..+.. +.+..++..+...+...|++++|...+++.... .| +...+..+...+...++++
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~----~~~~~~~~~~l~~~~~~~~~~~ 159 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP----TTTDPKVFYELGQAYYYNKEYV 159 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS----SCCCHHHHHHHHHHHHHTTCHH
T ss_pred HHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc----CCCcHHHHHHHHHHHHHHHHHH
Confidence 66666666666666665542 233455555666666666666666666555442 22 2223333331233334555
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCC---hHHHHHHHHHHH
Q 011323 252 RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD---WEFACSVYDDMT 296 (488)
Q Consensus 252 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~ 296 (488)
+|...|+.+.+.. +.+...+..+...+...|+ +++|...+++..
T Consensus 160 ~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 206 (272)
T 3u4t_A 160 KADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLI 206 (272)
T ss_dssp HHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHH
T ss_pred HHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHH
Confidence 5555555555543 3334444444444444444 444444444433
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.63 E-value=6.7e-13 Score=114.59 Aligned_cols=200 Identities=12% Similarity=0.015 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 011323 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDG 171 (488)
Q Consensus 92 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 171 (488)
...+..+...+...|++++|++.++.+.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 3455555556666666666666666655543 3345555555666666666666666666555542 2244555555555
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCC-CHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCCH
Q 011323 172 CAKAGQVAKAFGAYGIMRSKNVKP-DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 250 (488)
Q Consensus 172 ~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 250 (488)
+...|++++|.+.++++...+..| +...+..+..++...|++++|.+.+++..... +.+...+..+...+...|++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~la~~~~~~g~~ 191 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN---RNQPSVALEMADLLYKEREY 191 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---SCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---cccHHHHHHHHHHHHHcCCH
Confidence 555555555555555555421122 23344444444555555555555555444321 11223334444444444444
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHh
Q 011323 251 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 297 (488)
Q Consensus 251 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 297 (488)
++|...++.+.+.. +.+...+..+...+...|++++|.+.++++.+
T Consensus 192 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 192 VPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 44444444444332 23333444444444444444444444444443
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.62 E-value=5.8e-13 Score=112.67 Aligned_cols=95 Identities=7% Similarity=-0.063 Sum_probs=39.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 011323 94 TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCA 173 (488)
Q Consensus 94 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 173 (488)
.+..+...+...|++++|++.++.+.+.. +.+...+..+...+...|++++|.+.+++..+.. +.+..++..+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~ 87 (225)
T 2vq2_A 10 IKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFLC 87 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence 34444444444444444444444444332 2233344444444444444444444444444331 123333444444444
Q ss_pred hc-CCHHHHHHHHHHHHh
Q 011323 174 KA-GQVAKAFGAYGIMRS 190 (488)
Q Consensus 174 ~~-~~~~~a~~~~~~~~~ 190 (488)
.. |++++|...++++..
T Consensus 88 ~~~~~~~~A~~~~~~~~~ 105 (225)
T 2vq2_A 88 GRLNRPAESMAYFDKALA 105 (225)
T ss_dssp TTTCCHHHHHHHHHHHHT
T ss_pred HhcCcHHHHHHHHHHHHc
Confidence 44 444444444444433
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.62 E-value=3.2e-13 Score=114.29 Aligned_cols=198 Identities=7% Similarity=-0.078 Sum_probs=103.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 011323 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 315 (488)
Q Consensus 236 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 315 (488)
.+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...+++..+.... +..++..+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~ 87 (225)
T 2vq2_A 10 IKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD-SAEINNNYGWFLC 87 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-ChHHHHHHHHHHH
Confidence 34444445555555555555555554443 334445555555555555555555555555543322 4445555555555
Q ss_pred hc-CCHHHHHHHHHHHHHCCC-CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHH
Q 011323 316 HA-GKVEAAFEILQEAKNQGI-SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 393 (488)
Q Consensus 316 ~~-g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 393 (488)
.. |++++|...++.+.+.+. +.+...+..+..++...|++++|...++++.+.. +.+...+..+...+...|++++|
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 166 (225)
T 2vq2_A 88 GRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGDA 166 (225)
T ss_dssp TTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHHH
Confidence 55 555555555555554211 1224455555555556666666666665555433 23355555555566666666666
Q ss_pred HHHHHHHHhCCCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 011323 394 MEVLSDMKSLGLC-PNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (488)
Q Consensus 394 ~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 437 (488)
...++++.+.. + .+...+..+...+...|+.+.+..+++.+.+
T Consensus 167 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 167 DYYFKKYQSRV-EVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHH-CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 66666555432 2 3444555555555566666666666655554
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.62 E-value=9.9e-14 Score=126.26 Aligned_cols=242 Identities=10% Similarity=0.042 Sum_probs=180.4
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHH-HHHHHHHhhhCC---CCCHHHHHHHHHHHH
Q 011323 28 QLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKA-IKEAFRFFKLVP---NPTLSTFNMLMSVCA 103 (488)
Q Consensus 28 ~~~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~---~~~~~~~~~l~~~~~ 103 (488)
.......+.+.|++++|++.|+++++.+ |.+...+..++.++...|+ +++|+..|+++. +.+..+|..+..++.
T Consensus 100 ~~~lg~~~~~~g~~~~Al~~~~~al~l~--P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~ 177 (382)
T 2h6f_A 100 YDYFRAVLQRDERSERAFKLTRDAIELN--AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVE 177 (382)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHhC--ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 3334455558899999999999999887 7888888888888888886 999999988764 457778888888888
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-cCCHHHH-
Q 011323 104 SSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAK-AGQVAKA- 181 (488)
Q Consensus 104 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a- 181 (488)
..|++++|+..|+++.+.. +.+...|..+..++...|++++|++.++++++.. +.+...|+.+..++.. .|..++|
T Consensus 178 ~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~eA~ 255 (382)
T 2h6f_A 178 WLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRAV 255 (382)
T ss_dssp HHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHHH
T ss_pred HccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchHHH
Confidence 8899999999999888775 5577888888888889999999999999988874 3467888888888888 5554666
Q ss_pred ----HHHHHHHHhCCCCCCHhHHHHHHHHHHccC--CHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcC-------
Q 011323 182 ----FGAYGIMRSKNVKPDRVVFNALITACGQSG--AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG------- 248 (488)
Q Consensus 182 ----~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------- 248 (488)
+..|++..... +-+...|+.+...+...| ++++|++.+.++ .. ...+...+..+..+|.+.|
T Consensus 256 ~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~---~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 256 LEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP---SHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp HHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT---TCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc---CCCCHHHHHHHHHHHHHHhcccccch
Confidence 47777777653 345677888888887777 578888888777 32 1233456667777777653
Q ss_pred --CHHHHHHHHHHH-HhcCCCCCHHHHHHHHHHH
Q 011323 249 --QVDRAREVYKMI-HKYNIKGTPEVYTIAINCC 279 (488)
Q Consensus 249 --~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~ 279 (488)
..++|..+++.+ .+.+ +.....|..+...+
T Consensus 331 ~~~~~~A~~~~~~l~~~~D-P~r~~~w~~~~~~l 363 (382)
T 2h6f_A 331 EDILNKALELCEILAKEKD-TIRKEYWRYIGRSL 363 (382)
T ss_dssp HHHHHHHHHHHHHHHHTTC-GGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhC-chhHHHHHHHHHHH
Confidence 247788888887 5543 33445555554443
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.62 E-value=2.5e-12 Score=112.43 Aligned_cols=221 Identities=11% Similarity=-0.012 Sum_probs=111.8
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCHHHHHH
Q 011323 199 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN----AGQVDRAREVYKMIHKYNIKGTPEVYTI 274 (488)
Q Consensus 199 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 274 (488)
++..+...+...|++++|.+.|++.... .+...+..+...+.. .+++++|...|++..+.+ ++..+..
T Consensus 8 a~~~lg~~~~~~~~~~~A~~~~~~a~~~-----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 79 (273)
T 1ouv_A 8 ELVGLGAKSYKEKDFTQAKKYFEKACDL-----KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHL 79 (273)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 3334444444444444444444444331 112233334444444 455555555555444433 3444444
Q ss_pred HHHHHHc----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCccHHHHHHHH
Q 011323 275 AINCCSQ----TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH----AGKVEAAFEILQEAKNQGISVGIISYSSLM 346 (488)
Q Consensus 275 l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 346 (488)
+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|...+++..+.+ +...+..+.
T Consensus 80 lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 153 (273)
T 1ouv_A 80 LGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILG 153 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHH
Confidence 5555555 555555555555555442 44445555555555 555555555555555543 344445555
Q ss_pred HHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----CCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 011323 347 GACSN----AKNWQKALELYEHMKSIKLKPTVSTMNALITALCD----GDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 418 (488)
Q Consensus 347 ~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 418 (488)
..|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|+..+++..+.+ +...+..+...
T Consensus 154 ~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~ 227 (273)
T 1ouv_A 154 SLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAM 227 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHH
Confidence 55555 556666666666555432 34455555555555 566666666666655542 14445555555
Q ss_pred Hhh----cCCHHHHHHHHHHHHHcC
Q 011323 419 CER----KDDVEVGLMLLSQAKEDG 439 (488)
Q Consensus 419 ~~~----~g~~~~a~~~~~~~~~~~ 439 (488)
+.. .+++++|.+.+++..+.+
T Consensus 228 ~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 228 QYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHcCCCcccCHHHHHHHHHHHHHcC
Confidence 555 566666666666655543
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.62 E-value=3.3e-13 Score=122.79 Aligned_cols=249 Identities=10% Similarity=0.059 Sum_probs=184.4
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-HhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 011323 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK-VDAMFEVFHEMVNAGIEPNVHTYGALI 169 (488)
Q Consensus 91 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~ 169 (488)
+...|..+..++...|++++|++.++.+.+.. +-+..+|+.+..++...|+ +++|++.|++.++.. +-+...|+.+.
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g 173 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHH
Confidence 34577778888888999999999999888775 5577888888889999996 999999999988874 34678888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHh-cC
Q 011323 170 DGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN-AG 248 (488)
Q Consensus 170 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~ 248 (488)
.++...|++++|+..|+++.... +-+...|..+..++...|++++|+..++++.... +.+...|+.+..++.. .|
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~---P~~~~a~~~lg~~l~~l~~ 249 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED---VRNNSVWNQRYFVISNTTG 249 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999988774 4567888888888888888888988888887742 2244577777777777 55
Q ss_pred CHHHH-----HHHHHHHHhcCCCCCHHHHHHHHHHHHccC--ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---
Q 011323 249 QVDRA-----REVYKMIHKYNIKGTPEVYTIAINCCSQTG--DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG--- 318 (488)
Q Consensus 249 ~~~~a-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--- 318 (488)
..++| +..++...... +.+...|..+...+...| ++++|.+.+.++ +.. ..+...+..+..+|.+.|
T Consensus 250 ~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~-p~~~~al~~La~~~~~~~~~~ 326 (382)
T 2h6f_A 250 YNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS-HSSPYLIAFLVDIYEDMLENQ 326 (382)
T ss_dssp SCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT-CCCHHHHHHHHHHHHHHHHTT
T ss_pred cchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC-CCCHHHHHHHHHHHHHHhccc
Confidence 54666 47777777765 556777877777777777 577788777776 332 235667777777777653
Q ss_pred ------CHHHHHHHHHHH-HHCCCCccHHHHHHHHHHH
Q 011323 319 ------KVEAAFEILQEA-KNQGISVGIISYSSLMGAC 349 (488)
Q Consensus 319 ------~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~ 349 (488)
..++|.++++++ .+.. +.....|..+...+
T Consensus 327 ~~~~~~~~~~A~~~~~~l~~~~D-P~r~~~w~~~~~~l 363 (382)
T 2h6f_A 327 CDNKEDILNKALELCEILAKEKD-TIRKEYWRYIGRSL 363 (382)
T ss_dssp CSSHHHHHHHHHHHHHHHHHTTC-GGGHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHhC-chhHHHHHHHHHHH
Confidence 247777777777 4433 33344555554443
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.61 E-value=3.2e-11 Score=117.16 Aligned_cols=430 Identities=12% Similarity=0.059 Sum_probs=228.8
Q ss_pred HHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHhcCC---hhHHHHHHH
Q 011323 43 ECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKD---SEGAFQVLR 116 (488)
Q Consensus 43 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~---~~~a~~~~~ 116 (488)
+-+..|++.+..+ |.+...+..++..+.+.+.++.++.+|+++. +.....|...+..-.+.++ ++.+.++|+
T Consensus 50 d~i~~lE~~l~~n--p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfe 127 (679)
T 4e6h_A 50 DVIGKLNDMIEEQ--PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLA 127 (679)
T ss_dssp CHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHC--cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHH
Confidence 3444455555554 5555555556666655566666666666543 3455556666666556666 666666666
Q ss_pred HHHHcC-CCCCHHHHHHHHHHHHHcCCH--------hHHHHHHHHHHH-cCC-CC-CHHHHHHHHHHHH---------hc
Q 011323 117 LVQEAG-LKADCKLYTTLITTCAKSGKV--------DAMFEVFHEMVN-AGI-EP-NVHTYGALIDGCA---------KA 175 (488)
Q Consensus 117 ~~~~~~-~~~~~~~~~~l~~~~~~~~~~--------~~a~~~~~~~~~-~~~-~~-~~~~~~~l~~~~~---------~~ 175 (488)
+..... .+|++..|...+....+.++. +.+.++|+.... .|. .+ +...|...+.... ..
T Consensus 128 Ral~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq 207 (679)
T 4e6h_A 128 RCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQ 207 (679)
T ss_dssp HHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHH
T ss_pred HHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHH
Confidence 665442 125666666655554444432 223355555433 344 33 3355555554432 12
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHhHHHHHH---HHHH----------ccCCHHHHHHHHHHHhhCCCCCC-----------
Q 011323 176 GQVAKAFGAYGIMRSKNVKPDRVVFNALI---TACG----------QSGAVDRAFDVLAEMNAEVHPVD----------- 231 (488)
Q Consensus 176 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll---~~~~----------~~g~~~~a~~~~~~~~~~~~~~~----------- 231 (488)
++++.+.++|+.........-..+|.... .... ...+++.|...+.++.....++.
T Consensus 208 ~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~ 287 (679)
T 4e6h_A 208 QRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQAT 287 (679)
T ss_dssp HHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCC
T ss_pred hHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccch
Confidence 34555666666665431111122222111 1100 01122333444433221100100
Q ss_pred ----C--C------cchHHHHHHHHHhcC-------CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHH-HH
Q 011323 232 ----P--D------HITIGALMKACANAG-------QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC-SV 291 (488)
Q Consensus 232 ----~--~------~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~ 291 (488)
| + ...|...+..--..+ ..+.+..+|+...... +..+..|...+..+...|+.++|. .+
T Consensus 288 ~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~i 366 (679)
T 4e6h_A 288 ESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKY 366 (679)
T ss_dssp TTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHH
T ss_pred hccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 0 0 012222332211111 1233455676666553 556777777777777777777775 88
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---------Cc------------cHHHHHHHHHHHH
Q 011323 292 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI---------SV------------GIISYSSLMGACS 350 (488)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---------~~------------~~~~~~~l~~~~~ 350 (488)
|++..... +.+...+...+....+.|+++.|.++|+.+.+... .| ...+|...+....
T Consensus 367 l~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~er 445 (679)
T 4e6h_A 367 LKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMK 445 (679)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHH
Confidence 87776642 23555566667777777888888888877765310 12 1235666666666
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC-CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHH
Q 011323 351 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG-DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGL 429 (488)
Q Consensus 351 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 429 (488)
+.|+.+.|..+|.++.+.........|...+..-.+. ++.+.|.++|+...+. .+-+...|..++......|+.+.|.
T Consensus 446 R~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR 524 (679)
T 4e6h_A 446 RIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVK 524 (679)
T ss_dssp HHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHH
Confidence 7777888888888877641112233443333333333 3477888888877764 3445666667777777778888888
Q ss_pred HHHHHHHHcCCCC--cHHHHHHHHHHHhh--cHHHHHHHHHHhhhccCCCCc
Q 011323 430 MLLSQAKEDGVIP--NLVMFKCIIGMCSR--RYEKARTLNEHVLSFNSGRPQ 477 (488)
Q Consensus 430 ~~~~~~~~~~~~~--~~~~~~~li~~~~~--~~~~a~~~~~~~~~~~~~~~~ 477 (488)
.+|+++.+....+ ....|...+..-.+ ..+.+..+.+++....|.++.
T Consensus 525 ~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~ 576 (679)
T 4e6h_A 525 SLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNK 576 (679)
T ss_dssp HHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcH
Confidence 8888777654321 23355555554333 567777787777777776554
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.61 E-value=4.8e-12 Score=110.67 Aligned_cols=223 Identities=12% Similarity=0.007 Sum_probs=123.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHc----cCCHHHHHHHHHHHhhCCCCCCCCcchH
Q 011323 162 VHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ----SGAVDRAFDVLAEMNAEVHPVDPDHITI 237 (488)
Q Consensus 162 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 237 (488)
..++..+...+...|++++|...|++..+.+ +...+..+...+.. .+++++|...|++....+ +...+
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-----~~~a~ 77 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN-----YSNGC 77 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-----CHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC-----CHHHH
Confidence 3344444444444455555555554444421 23344444444444 455555555555544321 23344
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc----cCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 011323 238 GALMKACAN----AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ----TGDWEFACSVYDDMTKKGVIPDEVFLSA 309 (488)
Q Consensus 238 ~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 309 (488)
..+...|.. .+++++|...|++..+.+ ++..+..+...|.. .+++++|...+++..+.+ +...+..
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 151 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTI 151 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHH
Confidence 444445555 555555555555555443 44555555555555 666666666666665543 3444555
Q ss_pred HHHHHHh----cCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 011323 310 LIDFAGH----AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN----AKNWQKALELYEHMKSIKLKPTVSTMNALI 381 (488)
Q Consensus 310 l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 381 (488)
+...|.. .+++++|...+++..+.+ ++..+..+...|.. .+++++|...+++..+.+ +...+..+.
T Consensus 152 lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~ 225 (273)
T 1ouv_A 152 LGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLG 225 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHH
Confidence 5555555 666677777666666653 34556666666666 677777777777766643 245566666
Q ss_pred HHHHc----CCChhHHHHHHHHHHhCC
Q 011323 382 TALCD----GDQLPKTMEVLSDMKSLG 404 (488)
Q Consensus 382 ~~~~~----~~~~~~a~~~~~~~~~~~ 404 (488)
..|.. .+++++|.+.+++..+.|
T Consensus 226 ~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 226 AMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 66666 677777777777766543
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.61 E-value=9.8e-14 Score=119.10 Aligned_cols=200 Identities=14% Similarity=0.063 Sum_probs=109.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 011323 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDG 171 (488)
Q Consensus 92 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 171 (488)
...|..+...+...|++++|...|+.+.+.. +.+...+..+...+...|++++|.+.+++..+.. +.+..++..+...
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp -------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 3455555566666677777777777666543 4456666666666777777777777777666553 3355666666666
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCCHH
Q 011323 172 CAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD 251 (488)
Q Consensus 172 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 251 (488)
+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.... +.+...+..+...+...|+++
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN---ENDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC---CccHHHHHHHHHHHHHcCCHH
Confidence 666777777777776666543 3345556666666666666666666666655431 123344555555666666666
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhC
Q 011323 252 RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298 (488)
Q Consensus 252 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 298 (488)
+|...++.+.+.. +.+..++..+...+...|++++|...+++..+.
T Consensus 177 ~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 177 EALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 6666666655543 344555566666666666666666666665554
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.61 E-value=1.1e-13 Score=118.78 Aligned_cols=199 Identities=15% Similarity=0.083 Sum_probs=116.8
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 011323 235 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 314 (488)
Q Consensus 235 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 314 (488)
..+..+...+...|++++|...|+.+.+.. +.+...+..+...+...|++++|...+++..+.... +...+..+...+
T Consensus 24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~ 101 (243)
T 2q7f_A 24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSS-AATAYYGAGNVY 101 (243)
T ss_dssp ------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc-chHHHHHHHHHH
Confidence 344555555666666666666666666543 445566666666666666666666666666654332 556666666666
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHH
Q 011323 315 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 394 (488)
Q Consensus 315 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 394 (488)
...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.
T Consensus 102 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 179 (243)
T 2q7f_A 102 VVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEAL 179 (243)
T ss_dssp HHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHH
Confidence 66777777777776666553 3345666666666777777777777777666543 345666666667777777777777
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHc
Q 011323 395 EVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 438 (488)
Q Consensus 395 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 438 (488)
..++++.+.. +.+..++..+...+...|++++|...++++.+.
T Consensus 180 ~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 180 SQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 7777766542 334566666777777777777777777776664
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.58 E-value=5.5e-11 Score=115.53 Aligned_cols=418 Identities=8% Similarity=0.008 Sum_probs=282.0
Q ss_pred hHHHHHHHH----hcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHH---HHHHHHHhhhCC--C---CCHHHH
Q 011323 28 QLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKA---IKEAFRFFKLVP--N---PTLSTF 95 (488)
Q Consensus 28 ~~~~~~~l~----~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~--~---~~~~~~ 95 (488)
++.+|..|+ +.+.++.|..+|++++..- |....+....+..-.+.+. .+.+..+|+++. - +++..|
T Consensus 65 d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~f--P~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW 142 (679)
T 4e6h_A 65 DIFLYVKLLKHHVSLKQWKQVYETFDKLHDRF--PLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLW 142 (679)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHH
T ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 455665555 6799999999999999874 7777777677777778888 999999999875 2 888899
Q ss_pred HHHHHHHHhcCCh--------hHHHHHHHHHHH-cCC-CC-CHHHHHHHHHHHH---------HcCCHhHHHHHHHHHHH
Q 011323 96 NMLMSVCASSKDS--------EGAFQVLRLVQE-AGL-KA-DCKLYTTLITTCA---------KSGKVDAMFEVFHEMVN 155 (488)
Q Consensus 96 ~~l~~~~~~~~~~--------~~a~~~~~~~~~-~~~-~~-~~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~~ 155 (488)
...+....+.++. +...++|+.... .|. .+ +...|...+.... ..++++.+.++|+..+.
T Consensus 143 ~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~ 222 (679)
T 4e6h_A 143 LSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLC 222 (679)
T ss_dssp HHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHh
Confidence 8888776665543 334577776653 455 44 4567877776543 34457889999999885
Q ss_pred cCCCCCHHHHHHHHHHHHh-------------cCCHHHHHHHHHHHHh--CCC----C-----------C-----C---H
Q 011323 156 AGIEPNVHTYGALIDGCAK-------------AGQVAKAFGAYGIMRS--KNV----K-----------P-----D---R 197 (488)
Q Consensus 156 ~~~~~~~~~~~~l~~~~~~-------------~~~~~~a~~~~~~~~~--~~~----~-----------~-----~---~ 197 (488)
........+|......-.. ..+++.|...+.++.. .++ + | + .
T Consensus 223 iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql 302 (679)
T 4e6h_A 223 QPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQL 302 (679)
T ss_dssp SCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHH
T ss_pred CccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHH
Confidence 4222223344322221111 1223445555554321 111 1 1 0 1
Q ss_pred hHHHHHHHHHHccC-------CHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCCHHHHH-HHHHHHHhcCCCCCH
Q 011323 198 VVFNALITACGQSG-------AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR-EVYKMIHKYNIKGTP 269 (488)
Q Consensus 198 ~~~~~ll~~~~~~g-------~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~ 269 (488)
..|...+..--..+ ..+.+..+|++.... .+-....|...+..+...|+.+.|. .+|+..... ++.+.
T Consensus 303 ~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~---~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~ 378 (679)
T 4e6h_A 303 LIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH---VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSA 378 (679)
T ss_dssp HHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH---TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCH
T ss_pred HHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH---cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCH
Confidence 33444444332222 133456778888764 2234457777778788889999996 999998875 36677
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHhCCC---------CCC------------HHHHHHHHHHHHhcCCHHHHHHHHH
Q 011323 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGV---------IPD------------EVFLSALIDFAGHAGKVEAAFEILQ 328 (488)
Q Consensus 270 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---------~~~------------~~~~~~l~~~~~~~g~~~~a~~~~~ 328 (488)
..+...+...-+.|+++.|.++|+++..... .|+ ...|...+....+.|..+.|..+|.
T Consensus 379 ~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~ 458 (679)
T 4e6h_A 379 VLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFG 458 (679)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 7788888899999999999999999876310 132 2357777788888899999999999
Q ss_pred HHHHCCCCccHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCC
Q 011323 329 EAKNQGISVGIISYSSLMGACSNA-KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 407 (488)
Q Consensus 329 ~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p 407 (488)
...+.........|...+..-.+. ++.+.|.++|+...+. .+.+...|...+......|+.+.|..+|++......++
T Consensus 459 ~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~ 537 (679)
T 4e6h_A 459 KCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDS 537 (679)
T ss_dssp HHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSST
T ss_pred HHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCH
Confidence 998861122334444333333444 4599999999998875 34567777788888888999999999999998763222
Q ss_pred --CHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 011323 408 --NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 454 (488)
Q Consensus 408 --~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 454 (488)
....|..++.--...|+.+.+.++.+++.+.- |+......+++-|
T Consensus 538 ~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~--P~~~~~~~f~~ry 584 (679)
T 4e6h_A 538 HLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKF--PEVNKLEEFTNKY 584 (679)
T ss_dssp THHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHS--TTCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCcHHHHHHHHh
Confidence 35678888888889999999999999999864 3333344444444
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.54 E-value=2.3e-12 Score=105.26 Aligned_cols=166 Identities=17% Similarity=0.072 Sum_probs=103.3
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHH
Q 011323 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 347 (488)
Q Consensus 268 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 347 (488)
++.+|..+...|.+.|++++|+..|++..+..+. +...+..+..++.+.|++++|...+....... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 4455666666666666666666666666655433 55566666666666666666666666665543 334555555666
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHH
Q 011323 348 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEV 427 (488)
Q Consensus 348 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 427 (488)
.+...++++.+...+.+..... +.+...+..+...|.+.|++++|++.+++..+.. +.+..+|..+..++.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence 6666666666666666665543 3455666666666666677777777766666532 3345666666666777777777
Q ss_pred HHHHHHHHHH
Q 011323 428 GLMLLSQAKE 437 (488)
Q Consensus 428 a~~~~~~~~~ 437 (488)
|++.|+++.+
T Consensus 160 A~~~~~~al~ 169 (184)
T 3vtx_A 160 AVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 7777766665
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.54 E-value=3.4e-13 Score=125.40 Aligned_cols=156 Identities=13% Similarity=-0.046 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCc-cH
Q 011323 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGV-IPD----EVFLSALIDFAGHAGKVEAAFEILQEAKNQ----GISV-GI 339 (488)
Q Consensus 270 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~ 339 (488)
.++..+...+...|++++|...+++..+... .++ ..++..+...+...|++++|...+++..+. +..+ ..
T Consensus 188 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 267 (406)
T 3sf4_A 188 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 267 (406)
T ss_dssp HHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHH
Confidence 3566666677777777777777766553210 111 235666666777777777777777766532 1111 14
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHcCCChhHHHHHHHHHHhC----CCCC-CH
Q 011323 340 ISYSSLMGACSNAKNWQKALELYEHMKSIKL-KPT----VSTMNALITALCDGDQLPKTMEVLSDMKSL----GLCP-NT 409 (488)
Q Consensus 340 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~p-~~ 409 (488)
.++..+...|...|++++|...+++..+... .++ ..++..+...|...|++++|.+.+++..+. +..+ ..
T Consensus 268 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 347 (406)
T 3sf4_A 268 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGEL 347 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchh
Confidence 5666777777777888877777776653210 011 445666777777777888887777775431 2111 13
Q ss_pred HHHHHHHHHHhhcCCH
Q 011323 410 ITYSILLVACERKDDV 425 (488)
Q Consensus 410 ~~~~~l~~~~~~~g~~ 425 (488)
.++..+...+...|+.
T Consensus 348 ~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 348 TARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhHh
Confidence 4455555666555554
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.53 E-value=2.4e-13 Score=126.43 Aligned_cols=300 Identities=14% Similarity=0.027 Sum_probs=203.6
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHcCCHhHHHHHHHHHHHc----CCCC-C
Q 011323 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD----CKLYTTLITTCAKSGKVDAMFEVFHEMVNA----GIEP-N 161 (488)
Q Consensus 91 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~ 161 (488)
....+......+...|++++|+..|+...+.+ +.+ ..++..+...+...|++++|.+.+++.... +..| .
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 34455566667778888888888888877663 223 346777778888888888888888776542 1111 2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HhHHHHHHHHHHccCC--------------------HHHH
Q 011323 162 VHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV-KPD----RVVFNALITACGQSGA--------------------VDRA 216 (488)
Q Consensus 162 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~ll~~~~~~g~--------------------~~~a 216 (488)
..++..+...+...|++++|...+++...... .++ ..++..+...+...|+ +++|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 44677777788888888888888877654310 011 3466777777888888 8888
Q ss_pred HHHHHHHhhCCCCC--CC-CcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CCC----HHHHHHHHHHHHccCChHHH
Q 011323 217 FDVLAEMNAEVHPV--DP-DHITIGALMKACANAGQVDRAREVYKMIHKYNI-KGT----PEVYTIAINCCSQTGDWEFA 288 (488)
Q Consensus 217 ~~~~~~~~~~~~~~--~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~a 288 (488)
...+++........ .+ ...++..+...+...|++++|...++...+... .++ ..++..+...+...|++++|
T Consensus 167 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 246 (406)
T 3sf4_A 167 VDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 246 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 88877654321011 11 123567778888899999999999887765321 111 23778888899999999999
Q ss_pred HHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CC-ccHHHHHHHHHHHHhcCCHHHH
Q 011323 289 CSVYDDMTKKGVI-PD----EVFLSALIDFAGHAGKVEAAFEILQEAKNQG----IS-VGIISYSSLMGACSNAKNWQKA 358 (488)
Q Consensus 289 ~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~-~~~~~~~~l~~~~~~~g~~~~a 358 (488)
...+++....... ++ ..++..+...+...|++++|...+++..+.. .. ....++..+...|...|++++|
T Consensus 247 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 326 (406)
T 3sf4_A 247 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQA 326 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence 9999887643111 11 4567788889999999999999998876531 11 1256788888999999999999
Q ss_pred HHHHHHHHhC----CC-CCCHHHHHHHHHHHHcCCChh
Q 011323 359 LELYEHMKSI----KL-KPTVSTMNALITALCDGDQLP 391 (488)
Q Consensus 359 ~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~ 391 (488)
...+++..+. +. .....++..+...+...|+..
T Consensus 327 ~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 327 MHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 9999987642 21 112345556666666666553
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.53 E-value=3.4e-12 Score=117.63 Aligned_cols=232 Identities=9% Similarity=-0.061 Sum_probs=145.7
Q ss_pred HHHHHHccCCHHHHHHHHHHHhhCCCCCCC---CcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCC------CCCHHHHH
Q 011323 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDP---DHITIGALMKACANAGQVDRAREVYKMIHKYNI------KGTPEVYT 273 (488)
Q Consensus 203 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~~ 273 (488)
....+...|++++|...+++.......... ...++..+...+...|+++.|...+.+..+... +....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 334455666666666666666542111111 123455666666777777777777766544311 11134566
Q ss_pred HHHHHHHccCChHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CccHHHHH
Q 011323 274 IAINCCSQTGDWEFACSVYDDMTKKGVI-PD----EVFLSALIDFAGHAGKVEAAFEILQEAKNQ----GI-SVGIISYS 343 (488)
Q Consensus 274 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~~~~~ 343 (488)
.+...|...|++++|...+++..+.... ++ ..++..+...|...|++++|...+++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 7777777888888888877776542110 11 235667777888888888888888877662 22 33466778
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC----CCCCCHHHHHHHHHHHHcCCC---hhHHHHHHHHHHhCCCCCC-HHHHHHH
Q 011323 344 SLMGACSNAKNWQKALELYEHMKSI----KLKPTVSTMNALITALCDGDQ---LPKTMEVLSDMKSLGLCPN-TITYSIL 415 (488)
Q Consensus 344 ~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~p~-~~~~~~l 415 (488)
.+...|.+.|++++|...+++..+. +-+.....+..+...+...|+ +++|+.++++. +..|+ ...+..+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l 345 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDV 345 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHH
Confidence 8888888888888888888876542 111122334566677777887 66677666665 22333 4566778
Q ss_pred HHHHhhcCCHHHHHHHHHHHHH
Q 011323 416 LVACERKDDVEVGLMLLSQAKE 437 (488)
Q Consensus 416 ~~~~~~~g~~~~a~~~~~~~~~ 437 (488)
...|...|++++|...++++.+
T Consensus 346 a~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 346 AKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 8888888888888888887764
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.53 E-value=4e-13 Score=125.23 Aligned_cols=277 Identities=15% Similarity=0.025 Sum_probs=165.8
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhC----C-CCCCHhH
Q 011323 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNV----HTYGALIDGCAKAGQVAKAFGAYGIMRSK----N-VKPDRVV 199 (488)
Q Consensus 129 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~ 199 (488)
.+..+...+...|++++|.+.|++..+.+ +.+. ..+..+...|...|++++|...+++.... + .+....+
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 44445556666677777777776666652 1122 35556666666666666666666666542 0 0112233
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 011323 200 FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCC 279 (488)
Q Consensus 200 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 279 (488)
+..+...+...|++++|...+++......... +.+....++..+...|
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--------------------------------~~~~~~~~~~~l~~~~ 176 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLG--------------------------------DRLSEGRALYNLGNVY 176 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--------------------------------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhh--------------------------------chHHHHHHHHHHHHHH
Confidence 44444455555555555555554433100000 0011123455555555
Q ss_pred HccCC-----------------hHHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--
Q 011323 280 SQTGD-----------------WEFACSVYDDMTKK----GVI-PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI-- 335 (488)
Q Consensus 280 ~~~~~-----------------~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-- 335 (488)
...|+ +++|...+.+..+. +.. ....++..+...+...|++++|...+++..+...
T Consensus 177 ~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 256 (411)
T 4a1s_A 177 HAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREF 256 (411)
T ss_dssp HHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhc
Confidence 55566 56666655554321 111 1224566677777788888888888777654311
Q ss_pred ---CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC---C--CCHHHHHHHHHHHHcCCChhHHHHHHHHHHhC----
Q 011323 336 ---SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL---K--PTVSTMNALITALCDGDQLPKTMEVLSDMKSL---- 403 (488)
Q Consensus 336 ---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---- 403 (488)
......+..+...|...|++++|...+++..+... . ....++..+...|...|++++|...+++..+.
T Consensus 257 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 336 (411)
T 4a1s_A 257 GDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQEL 336 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC
Confidence 01123677888888899999999998887764210 0 11456778888899999999999999887642
Q ss_pred CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHHHc
Q 011323 404 GLCP-NTITYSILLVACERKDDVEVGLMLLSQAKED 438 (488)
Q Consensus 404 ~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 438 (488)
+..+ ...++..+...+...|++++|..+++++.+.
T Consensus 337 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 337 GDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 1111 1457788889999999999999999988874
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.2e-12 Score=120.57 Aligned_cols=307 Identities=10% Similarity=0.020 Sum_probs=143.0
Q ss_pred CCchhHHHHHHHHhcCCHHHHHHHHHHHHHCCCC---CchHHHHHHHH--HHHhhhHHHHHHH-----------HHhhhC
Q 011323 24 DVSEQLHSYNRLIRQGRISECIDLLEDMERKGLL---DMDKVYHARFF--NVCKSQKAIKEAF-----------RFFKLV 87 (488)
Q Consensus 24 ~~~~~~~~~~~l~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~~l~--~~~~~~~~~~~A~-----------~~~~~~ 87 (488)
.+...+..|-..++++++++|..+++++.+.-.. ..+...+..+. +.....+.++.+. +.++.+
T Consensus 11 ~v~~~l~~w~~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i 90 (383)
T 3ulq_A 11 SIGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEI 90 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHH
Confidence 3556777899999999999999999998754211 11222111111 1111223333333 333332
Q ss_pred CC--CCHHH------HHHHHHHHHhcCChhHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHHcCCHhHHHHHHHHHH
Q 011323 88 PN--PTLST------FNMLMSVCASSKDSEGAFQVLRLVQEA----GLKA-DCKLYTTLITTCAKSGKVDAMFEVFHEMV 154 (488)
Q Consensus 88 ~~--~~~~~------~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 154 (488)
.. .+... +......+...|++++|++.++...+. +-++ ...++..+...+...|++++|.+.+++..
T Consensus 91 ~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al 170 (383)
T 3ulq_A 91 DKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAY 170 (383)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HhcCCCchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 10 01111 111333445556666666666655432 1011 22345555555666666666666555544
Q ss_pred HcCC-CC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCC
Q 011323 155 NAGI-EP-----NVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV-KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV 227 (488)
Q Consensus 155 ~~~~-~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 227 (488)
+.-. .+ ...+++.+...|...|++++|...|++..+... .++..
T Consensus 171 ~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----------------------------- 221 (383)
T 3ulq_A 171 EIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQ----------------------------- 221 (383)
T ss_dssp HHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH-----------------------------
T ss_pred HHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChH-----------------------------
Confidence 3200 01 123445555555555555555555555442200 00000
Q ss_pred CCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhc----CC-CCCHHHHHHHHHHHHccCChHHHHHHHHHHHhC----
Q 011323 228 HPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY----NI-KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK---- 298 (488)
Q Consensus 228 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---- 298 (488)
....++..+..+|...|++++|...++...+. +. +....++..+...+.+.|++++|...+++..+.
T Consensus 222 ----~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 297 (383)
T 3ulq_A 222 ----LMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKA 297 (383)
T ss_dssp ----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc
Confidence 00113444444445555555555554444331 11 222444555555555555555555555544331
Q ss_pred CCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCC-ccHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011323 299 GVIPDEVFLSALIDFAGHAGK---VEAAFEILQEAKNQGIS-VGIISYSSLMGACSNAKNWQKALELYEHMK 366 (488)
Q Consensus 299 ~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 366 (488)
+.......+..+...+...|+ +++|+.+++.. +.. .....+..+...|...|++++|...+++..
T Consensus 298 ~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al 366 (383)
T 3ulq_A 298 GDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVE 366 (383)
T ss_dssp TCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 111111223445555555565 44454444443 212 223355566666667777777776666654
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.52 E-value=4.4e-12 Score=103.59 Aligned_cols=165 Identities=16% Similarity=0.050 Sum_probs=117.2
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 011323 234 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 313 (488)
Q Consensus 234 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 313 (488)
...|..+...+...|++++|...|++..+.. +.++.++..+..+|.+.|++++|...+......... +...+..+...
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~ 82 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGSA 82 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHHH
Confidence 3456667777777777777777777776665 456667777777777777777777777776665443 55666666667
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHH
Q 011323 314 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 393 (488)
Q Consensus 314 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 393 (488)
+...++++.+...+.+..+.. +.+...+..+...|.+.|++++|.+.|++..+.. +.+..+|..+..+|.+.|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHH
Confidence 777777777777777776654 3456677777777777778888877777777654 45667777777777778888888
Q ss_pred HHHHHHHHh
Q 011323 394 MEVLSDMKS 402 (488)
Q Consensus 394 ~~~~~~~~~ 402 (488)
++.|++.++
T Consensus 161 ~~~~~~al~ 169 (184)
T 3vtx_A 161 VKYFKKALE 169 (184)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 888777776
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.52 E-value=4.5e-13 Score=124.85 Aligned_cols=277 Identities=13% Similarity=0.061 Sum_probs=156.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHHcCCHhHHHHHHHHHHHc----CC-CCCHHH
Q 011323 94 TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADC----KLYTTLITTCAKSGKVDAMFEVFHEMVNA----GI-EPNVHT 164 (488)
Q Consensus 94 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~ 164 (488)
.+..+...+...|++++|+..|+.+.+.+ +.+. ..+..+...+...|++++|.+.+++..+. +. +....+
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 34455667888999999999999988764 3333 47888888899999999999999887653 11 223467
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CCCHhHHHHHHHHHHccCC-----------------HHHHHHHHHH
Q 011323 165 YGALIDGCAKAGQVAKAFGAYGIMRSK----NV-KPDRVVFNALITACGQSGA-----------------VDRAFDVLAE 222 (488)
Q Consensus 165 ~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~ll~~~~~~g~-----------------~~~a~~~~~~ 222 (488)
+..+...|...|++++|...+++.... +- +....++..+...+...|+ +++|.+.+++
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 208 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE 208 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 788888999999999999999887643 11 1123466667777777777 6666666655
Q ss_pred HhhCCCCC---CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHccCChHHHHHHHHHHHhC
Q 011323 223 MNAEVHPV---DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK-GTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298 (488)
Q Consensus 223 ~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 298 (488)
........ .....++..+...+...|++++|...++...+.... .+..
T Consensus 209 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---------------------------- 260 (411)
T 4a1s_A 209 NLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRA---------------------------- 260 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH----------------------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcH----------------------------
Confidence 43210000 001123444455555555555555555544332100 0100
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC----
Q 011323 299 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI-----SVGIISYSSLMGACSNAKNWQKALELYEHMKSIK---- 369 (488)
Q Consensus 299 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---- 369 (488)
.....+..+...+...|++++|...+++..+... .....++..+...|...|++++|...+++.....
T Consensus 261 ---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 337 (411)
T 4a1s_A 261 ---AERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELG 337 (411)
T ss_dssp ---HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred ---HHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC
Confidence 0011334444444444555554444444332110 0113344555555555555555555555544210
Q ss_pred -CCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 011323 370 -LKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 402 (488)
Q Consensus 370 -~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 402 (488)
......++..+...|...|++++|.+.+++..+
T Consensus 338 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 338 DRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 001123455555666666666666666666554
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.50 E-value=8.3e-13 Score=119.19 Aligned_cols=97 Identities=12% Similarity=0.017 Sum_probs=47.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHcCCChhHHHHHHHHHHhC----CCCC-CHH
Q 011323 341 SYSSLMGACSNAKNWQKALELYEHMKSIKL-KPT----VSTMNALITALCDGDQLPKTMEVLSDMKSL----GLCP-NTI 410 (488)
Q Consensus 341 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~p-~~~ 410 (488)
++..+...+...|++++|...+++..+... .++ ..++..+...+...|++++|...+++..+. +-.+ ...
T Consensus 225 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 304 (338)
T 3ro2_A 225 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 304 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHH
Confidence 344444445555555555555544432100 001 334445555555566666666655554321 1001 133
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 011323 411 TYSILLVACERKDDVEVGLMLLSQAKE 437 (488)
Q Consensus 411 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 437 (488)
++..+...+...|++++|...++++.+
T Consensus 305 ~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 305 ACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 455566666666666666666666654
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.50 E-value=5.9e-11 Score=105.61 Aligned_cols=237 Identities=14% Similarity=0.071 Sum_probs=182.4
Q ss_pred HhHHHHHHHHHHcc----CCH----HHHHHHHHHHhhCCCCCCCCcchHHHHHHHHH-------hcCCH-------HHHH
Q 011323 197 RVVFNALITACGQS----GAV----DRAFDVLAEMNAEVHPVDPDHITIGALMKACA-------NAGQV-------DRAR 254 (488)
Q Consensus 197 ~~~~~~ll~~~~~~----g~~----~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~-------~~a~ 254 (488)
...|...+....+. ++. ++|..+|++..... +.+...|..++..+. ..|++ ++|.
T Consensus 8 ~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~---p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~ 84 (308)
T 2ond_A 8 VDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL---GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAA 84 (308)
T ss_dssp HHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHH
Confidence 45666777665443 233 68889999988742 234456777776665 35885 8999
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011323 255 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV-FLSALIDFAGHAGKVEAAFEILQEAKNQ 333 (488)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 333 (488)
.+|++....-.+.+...|..++..+.+.|++++|..+|++..+..+. +.. .|..++..+.+.|++++|..+|++..+.
T Consensus 85 ~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 163 (308)
T 2ond_A 85 NIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKARED 163 (308)
T ss_dssp HHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 99999988322557778999999999999999999999999885432 333 7888889999999999999999999886
Q ss_pred CCCccHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCC-CCC--CH
Q 011323 334 GISVGIISYSSLMGACS-NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG-LCP--NT 409 (488)
Q Consensus 334 ~~~~~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~p--~~ 409 (488)
. +.+...|........ ..|+.++|..+|++..+.. +.+...|..++..+.+.|++++|..+|++..... ++| ..
T Consensus 164 ~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~ 241 (308)
T 2ond_A 164 A-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSG 241 (308)
T ss_dssp T-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCH
T ss_pred C-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHH
Confidence 5 334555554443322 3799999999999988754 4567889999999999999999999999998852 455 36
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHcC
Q 011323 410 ITYSILLVACERKDDVEVGLMLLSQAKEDG 439 (488)
Q Consensus 410 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 439 (488)
..|..++......|+.+.|..+++++.+..
T Consensus 242 ~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~ 271 (308)
T 2ond_A 242 EIWARFLAFESNIGDLASILKVEKRRFTAF 271 (308)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHc
Confidence 678888888999999999999999988753
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.50 E-value=6e-11 Score=105.54 Aligned_cols=216 Identities=9% Similarity=0.099 Sum_probs=111.4
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-------cCCH-------hHHHHHHHHHHH-cCCCCCHHHHHHHHHHHH
Q 011323 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAK-------SGKV-------DAMFEVFHEMVN-AGIEPNVHTYGALIDGCA 173 (488)
Q Consensus 109 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~-------~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~ 173 (488)
++|..+|+...+.. +.+...|..++..+.. .|++ ++|..+|++..+ .. +.+...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~-p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL-KKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTT-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 56666777666543 4456666666666543 3554 666666666665 21 224456666666666
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCC-Hh-HHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHH-hcCCH
Q 011323 174 KAGQVAKAFGAYGIMRSKNVKPD-RV-VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA-NAGQV 250 (488)
Q Consensus 174 ~~~~~~~a~~~~~~~~~~~~~~~-~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~ 250 (488)
..|++++|..+|++..+. .|+ .. .|..+...+.+.|++++|..+|++..... +.+...|........ ..|++
T Consensus 111 ~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~---p~~~~~~~~~a~~~~~~~~~~ 185 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA---RTRHHVYVTAALMEYYCSKDK 185 (308)
T ss_dssp HTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST---TCCTHHHHHHHHHHHHTSCCH
T ss_pred hcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHHcCCH
Confidence 666666666666666654 332 22 56666666666666666666666665431 111222222211111 13555
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHH
Q 011323 251 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG-VIP--DEVFLSALIDFAGHAGKVEAAFEIL 327 (488)
Q Consensus 251 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~a~~~~ 327 (488)
+.|..+|+...+.. +.++..+..++..+.+.|++++|..+|++..... ..| ....|..++....+.|+.+.|..++
T Consensus 186 ~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~ 264 (308)
T 2ond_A 186 SVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVE 264 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 55555555554432 2344455555555555555555555555554431 122 2334444444444445555554444
Q ss_pred HHHHH
Q 011323 328 QEAKN 332 (488)
Q Consensus 328 ~~~~~ 332 (488)
+++.+
T Consensus 265 ~~a~~ 269 (308)
T 2ond_A 265 KRRFT 269 (308)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.48 E-value=1e-12 Score=118.55 Aligned_cols=273 Identities=14% Similarity=0.044 Sum_probs=144.1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHcCCHhHHHHHHHHHHHc----CCC-CCHHHHH
Q 011323 96 NMLMSVCASSKDSEGAFQVLRLVQEAGLKAD----CKLYTTLITTCAKSGKVDAMFEVFHEMVNA----GIE-PNVHTYG 166 (488)
Q Consensus 96 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~ 166 (488)
......+...|++++|+..++.+.+.. +.+ ...+..+...+...|++++|.+.+++..+. +.. ....++.
T Consensus 9 ~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 87 (338)
T 3ro2_A 9 ALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASG 87 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHH
Confidence 334456677777888888887777653 223 356667777777778888777777765432 111 1244566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HhHHHHHHHHHHccCC--------------------HHHHHHHHH
Q 011323 167 ALIDGCAKAGQVAKAFGAYGIMRSKNV-KPD----RVVFNALITACGQSGA--------------------VDRAFDVLA 221 (488)
Q Consensus 167 ~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~ll~~~~~~g~--------------------~~~a~~~~~ 221 (488)
.+...+...|++++|...+++...... .++ ..++..+...+...|+ +++|.+.++
T Consensus 88 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~ 167 (338)
T 3ro2_A 88 NLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYE 167 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHH
Confidence 677777777777777777776553210 011 2245555555666665 555555544
Q ss_pred HHhhCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCC
Q 011323 222 EMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYN-IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGV 300 (488)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 300 (488)
+.... .. ..+ .+....++..+...+...|++++|...+++..+...
T Consensus 168 ~a~~~------------------------------~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 214 (338)
T 3ro2_A 168 ENLSL------------------------------VT---ALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK 214 (338)
T ss_dssp HHHHH------------------------------HH---HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHH------------------------------HH---hcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 43221 00 000 000122344444445555555555555544332100
Q ss_pred -CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CC-ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-
Q 011323 301 -IPD----EVFLSALIDFAGHAGKVEAAFEILQEAKNQG----IS-VGIISYSSLMGACSNAKNWQKALELYEHMKSIK- 369 (488)
Q Consensus 301 -~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~- 369 (488)
.++ ..++..+...+...|++++|...+++..+.. .. ....++..+...+...|++++|...+++..+..
T Consensus 215 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 294 (338)
T 3ro2_A 215 EFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ 294 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 001 1244555555556666666666665544321 00 113455566666666666666666666654321
Q ss_pred ---C-CCCHHHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 011323 370 ---L-KPTVSTMNALITALCDGDQLPKTMEVLSDMKS 402 (488)
Q Consensus 370 ---~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 402 (488)
. .....++..+...|.+.|++++|...+++..+
T Consensus 295 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 295 ELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 0 01133555666666777777777777776654
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.46 E-value=3.9e-12 Score=120.24 Aligned_cols=213 Identities=13% Similarity=0.018 Sum_probs=143.7
Q ss_pred HHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCCH-HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 011323 213 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV-DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 291 (488)
Q Consensus 213 ~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 291 (488)
++++.+.+++.... .+.+...+..+...+...|++ ++|...|+...+.. +.+...+..+..+|...|++++|...
T Consensus 84 ~~~al~~l~~~~~~---~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~ 159 (474)
T 4abn_A 84 MEKTLQQMEEVLGS---AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTC 159 (474)
T ss_dssp HHHHHHHHHHHHTT---CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhcc---CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 34455555544432 112344555566666666666 77777776666654 44566677777777777777777777
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhc--------CC
Q 011323 292 YDDMTKKGVIPDEVFLSALIDFAGHA---------GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA--------KN 354 (488)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~ 354 (488)
|++..+.. |+...+..+...+... |++++|...+++..+.. +.+...+..+..+|... |+
T Consensus 160 ~~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~ 236 (474)
T 4abn_A 160 FSGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKI 236 (474)
T ss_dssp HHHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccch
Confidence 77766653 4456666666777776 77777777777777654 34567777777777777 77
Q ss_pred HHHHHHHHHHHHhCCCC---CCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHH
Q 011323 355 WQKALELYEHMKSIKLK---PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLML 431 (488)
Q Consensus 355 ~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 431 (488)
+++|...|++..+.. + .+...|..+..+|...|++++|.+.|++..+.. +.+...+..+...+...|++++|.+.
T Consensus 237 ~~~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~ 314 (474)
T 4abn_A 237 SQQALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLES 314 (474)
T ss_dssp HHHHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888877653 2 467778888888888888888888888877642 33466677777778888887777765
Q ss_pred HHH
Q 011323 432 LSQ 434 (488)
Q Consensus 432 ~~~ 434 (488)
+.+
T Consensus 315 ~~~ 317 (474)
T 4abn_A 315 KGK 317 (474)
T ss_dssp TTT
T ss_pred hcc
Confidence 543
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.46 E-value=3.2e-12 Score=120.88 Aligned_cols=214 Identities=11% Similarity=0.002 Sum_probs=124.3
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH-hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 011323 108 SEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV-DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYG 186 (488)
Q Consensus 108 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 186 (488)
++++++.++...... +.+...+..+...+...|++ ++|++.|++..+.. +.+...|..+...|...|++++|...|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 445555555444322 33455555666666666666 66666666655542 2235566666666666666666666666
Q ss_pred HHHhCCCCCCHhHHHHHHHHHHcc---------CCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhc--------CC
Q 011323 187 IMRSKNVKPDRVVFNALITACGQS---------GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA--------GQ 249 (488)
Q Consensus 187 ~~~~~~~~~~~~~~~~ll~~~~~~---------g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~ 249 (488)
+..+. .|+...+..+..++... |++++|++.+++..... +.+...|..+..+|... |+
T Consensus 162 ~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~~~~~~~~~g~ 236 (474)
T 4abn_A 162 GALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD---VLDGRSWYILGNAYLSLYFNTGQNPKI 236 (474)
T ss_dssp HHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHHHHhhccccch
Confidence 66554 34455555566666666 66666666666655431 12234555555666555 66
Q ss_pred HHHHHHHHHHHHhcCCC---CCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 011323 250 VDRAREVYKMIHKYNIK---GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 326 (488)
Q Consensus 250 ~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 326 (488)
+++|...|+...+.. + .++..+..+..+|...|++++|...|++..+.... +...+..+..++...|++++|.+.
T Consensus 237 ~~~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eAi~~ 314 (474)
T 4abn_A 237 SQQALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLTSLLES 314 (474)
T ss_dssp HHHHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666553 3 45666666666666667777777766666655433 455566666666666666666665
Q ss_pred HHHH
Q 011323 327 LQEA 330 (488)
Q Consensus 327 ~~~~ 330 (488)
+..+
T Consensus 315 ~~~~ 318 (474)
T 4abn_A 315 KGKT 318 (474)
T ss_dssp TTTC
T ss_pred hccc
Confidence 5443
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.1e-10 Score=107.17 Aligned_cols=230 Identities=11% Similarity=-0.067 Sum_probs=158.8
Q ss_pred HHHHHccCCHHHHHHHHHHHhhCCCCCCC---CcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--C----CCHHHHHH
Q 011323 204 ITACGQSGAVDRAFDVLAEMNAEVHPVDP---DHITIGALMKACANAGQVDRAREVYKMIHKYNI--K----GTPEVYTI 274 (488)
Q Consensus 204 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~----~~~~~~~~ 274 (488)
...+...|++++|...+++.......... ...++..+...|...|+++.|...++...+... . ....+++.
T Consensus 108 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 187 (378)
T 3q15_A 108 GMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFV 187 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHH
Confidence 34456778888888888777653211111 123566677778888888888888876654311 1 12446777
Q ss_pred HHHHHHccCChHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCccHHHHHH
Q 011323 275 AINCCSQTGDWEFACSVYDDMTKK----GVIP-DEVFLSALIDFAGHAGKVEAAFEILQEAKN-----QGISVGIISYSS 344 (488)
Q Consensus 275 l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~~~ 344 (488)
+...|...|++++|.+.+.+..+. +..+ ...++..+..+|...|++++|...+++..+ .. +....++..
T Consensus 188 lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~ 266 (378)
T 3q15_A 188 IAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLFG 266 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHH
Confidence 888888889999988888876652 1111 234677788888899999999999988876 43 334778888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCC----CCCCHHHHHHHHHHHHcCCC---hhHHHHHHHHHHhCCCCCC-HHHHHHHH
Q 011323 345 LMGACSNAKNWQKALELYEHMKSIK----LKPTVSTMNALITALCDGDQ---LPKTMEVLSDMKSLGLCPN-TITYSILL 416 (488)
Q Consensus 345 l~~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~p~-~~~~~~l~ 416 (488)
+...+.+.|++++|...+++..+.. -+.....+..+...+...++ +.+|+..+++. +..|+ ...+..+.
T Consensus 267 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la 343 (378)
T 3q15_A 267 LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARSAA 343 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHHHH
Confidence 8999999999999999998886531 12223445556666777777 77777777762 22333 45667788
Q ss_pred HHHhhcCCHHHHHHHHHHHHH
Q 011323 417 VACERKDDVEVGLMLLSQAKE 437 (488)
Q Consensus 417 ~~~~~~g~~~~a~~~~~~~~~ 437 (488)
..|...|++++|...++++.+
T Consensus 344 ~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 344 AVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 899999999999999988764
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.43 E-value=9.1e-13 Score=117.61 Aligned_cols=133 Identities=15% Similarity=0.067 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHc------CC
Q 011323 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEA-------GLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA------GI 158 (488)
Q Consensus 92 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~ 158 (488)
..++..+...+...|++++|+..++.+.+. ..+....++..+...+...|++++|.+.+++..+. +-
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 445666666777777777777777666652 12233455666666666777777777766666543 11
Q ss_pred -CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCCC-CHhHHHHHHHHHHccCCHHHHHHHHHHHh
Q 011323 159 -EPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK------NVKP-DRVVFNALITACGQSGAVDRAFDVLAEMN 224 (488)
Q Consensus 159 -~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 224 (488)
+....++..+...|...|++++|...+++..+. +..| ....+..+...+...|++++|.+.+++..
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 180 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRAL 180 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 112345555666666666666666666655432 1111 12334444444444455555555444443
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.41 E-value=9.6e-12 Score=110.91 Aligned_cols=241 Identities=12% Similarity=0.030 Sum_probs=159.2
Q ss_pred CHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCC-----CCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhc------C
Q 011323 196 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVH-----PVDPDHITIGALMKACANAGQVDRAREVYKMIHKY------N 264 (488)
Q Consensus 196 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~ 264 (488)
+..++..+...+...|++++|..+++++..... .......++..+...+...|++++|...++.+... +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 356677888888999999999999998876200 01122446777888888899999999999877654 1
Q ss_pred -CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhC------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---
Q 011323 265 -IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK------GVIP-DEVFLSALIDFAGHAGKVEAAFEILQEAKNQ--- 333 (488)
Q Consensus 265 -~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--- 333 (488)
.+....++..+...+...|++++|...+++..+. +..| ....+..+...+...|++++|...++++.+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1223567788888899999999999999887754 2222 3456777788888899999999999887764
Q ss_pred ---C-CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-------CCCCCH-------HHHHHHHHHHHcCCChhHHHH
Q 011323 334 ---G-ISVGIISYSSLMGACSNAKNWQKALELYEHMKSI-------KLKPTV-------STMNALITALCDGDQLPKTME 395 (488)
Q Consensus 334 ---~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~-------~~~~~l~~~~~~~~~~~~a~~ 395 (488)
+ .+....++..+...|...|++++|...++++.+. ...+.. ..+..+...+...+.+.++..
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 265 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGG 265 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 1 1223457788888888999999999998888742 111111 112222333445566666666
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 011323 396 VLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (488)
Q Consensus 396 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 437 (488)
.++..... .+....++..+...|...|++++|.++++++.+
T Consensus 266 ~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 266 WYKACKVD-SPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhhcCCC-CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 77666543 133466788888889999999999999888765
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.40 E-value=3.5e-10 Score=103.73 Aligned_cols=167 Identities=12% Similarity=-0.050 Sum_probs=83.9
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhCCCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--ccHHHHH-
Q 011323 271 VYTIAINCCSQTGDWEFACSVYDDMTKKGVI----PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGIS--VGIISYS- 343 (488)
Q Consensus 271 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~- 343 (488)
.+..+...+...|++++|...+++....... ....++..+...+...|++++|...+++....... .......
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~ 216 (373)
T 1hz4_A 137 LVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISN 216 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHH
Confidence 3444455555556666665555554432111 01234555555566666666666666655432101 1111111
Q ss_pred ---HHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHcCCChhHHHHHHHHHHh----CCCCCCH-HHH
Q 011323 344 ---SLMGACSNAKNWQKALELYEHMKSIKLKP---TVSTMNALITALCDGDQLPKTMEVLSDMKS----LGLCPNT-ITY 412 (488)
Q Consensus 344 ---~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~p~~-~~~ 412 (488)
..+..+...|++++|...+++.......+ ....+..+...+...|++++|...+++... .|.+++. ..+
T Consensus 217 ~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~ 296 (373)
T 1hz4_A 217 ANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNL 296 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHH
Confidence 12233556666666666666655432111 122344555666666777777766666542 2211222 244
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHH
Q 011323 413 SILLVACERKDDVEVGLMLLSQAKE 437 (488)
Q Consensus 413 ~~l~~~~~~~g~~~~a~~~~~~~~~ 437 (488)
..+..++...|+.++|...+++..+
T Consensus 297 ~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 297 LLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 5555666667777777777666553
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.7e-10 Score=105.99 Aligned_cols=232 Identities=9% Similarity=-0.016 Sum_probs=154.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCC---C-CcchHH
Q 011323 168 LIDGCAKAGQVAKAFGAYGIMRSKNV-KPD----RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD---P-DHITIG 238 (488)
Q Consensus 168 l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~---~-~~~~~~ 238 (488)
....+...|++++|+..|++...... .++ ..++..+...|...|+++.|...+++......... + ...++.
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 44455677888888888887764310 112 34566677777888888888877777654211111 1 133566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcC----CC-CCHHHHHHHHHHHHccCChHHHHHHHHHHHh-----CCCCCCHHHHH
Q 011323 239 ALMKACANAGQVDRAREVYKMIHKYN----IK-GTPEVYTIAINCCSQTGDWEFACSVYDDMTK-----KGVIPDEVFLS 308 (488)
Q Consensus 239 ~l~~~~~~~~~~~~a~~~~~~~~~~~----~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~ 308 (488)
.+..+|...|++++|...++...+.. .+ ....++..+..+|...|++++|...+++..+ .... ...++.
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~ 265 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPKVLF 265 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHHHHH
Confidence 77778888888888888887665531 11 1134677788888888888888888888766 3333 366777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCC----CCccHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 011323 309 ALIDFAGHAGKVEAAFEILQEAKNQG----ISVGIISYSSLMGACSNAKN---WQKALELYEHMKSIKLKPTVSTMNALI 381 (488)
Q Consensus 309 ~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~l~ 381 (488)
.+...+.+.|++++|...+++..+.. .+.....+..+...+...++ +.+|...++... ..+.....+..+.
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~--~~~~~~~~~~~la 343 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKN--LHAYIEACARSAA 343 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCC--ChhHHHHHHHHHH
Confidence 88888888899999998888877642 12224456666667777777 677777766522 1112234566778
Q ss_pred HHHHcCCChhHHHHHHHHHHh
Q 011323 382 TALCDGDQLPKTMEVLSDMKS 402 (488)
Q Consensus 382 ~~~~~~~~~~~a~~~~~~~~~ 402 (488)
..|...|++++|...+++..+
T Consensus 344 ~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 344 AVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 888899999999998888754
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.37 E-value=4.8e-10 Score=94.89 Aligned_cols=131 Identities=17% Similarity=0.027 Sum_probs=64.4
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 011323 235 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 314 (488)
Q Consensus 235 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 314 (488)
..+......+...|++++|...|+...+...+++...+..+..++...|++++|...+++..+..+. +...+..+..++
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~ 86 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKSAAY 86 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHHHHH
Confidence 3444445555555555555555555555442244444444555555555555555555555544322 334445555555
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCccH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011323 315 GHAGKVEAAFEILQEAKNQGISVGI-------ISYSSLMGACSNAKNWQKALELYEHMKS 367 (488)
Q Consensus 315 ~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 367 (488)
...|++++|...+++..+.. +.+. ..|..+...+...|++++|...|+++.+
T Consensus 87 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 145 (228)
T 4i17_A 87 RDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD 145 (228)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh
Confidence 55555555555555555432 1122 2344444444455555555555555444
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.37 E-value=8.5e-10 Score=101.14 Aligned_cols=268 Identities=12% Similarity=0.038 Sum_probs=150.8
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHHcCCHhHHHHHHHHHHHcCC-CCC----HHHHHHHH
Q 011323 99 MSVCASSKDSEGAFQVLRLVQEAGLKADCK----LYTTLITTCAKSGKVDAMFEVFHEMVNAGI-EPN----VHTYGALI 169 (488)
Q Consensus 99 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~ 169 (488)
...+...|++++|...++.........+.. ++..+...+...|++++|.+.+++...... ..+ ..++..+.
T Consensus 21 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 100 (373)
T 1hz4_A 21 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 100 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 345566778888888887776543222221 455566677777888888888777654210 111 12355666
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC----CCC--C-CHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCC--cchHHHH
Q 011323 170 DGCAKAGQVAKAFGAYGIMRSK----NVK--P-DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD--HITIGAL 240 (488)
Q Consensus 170 ~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~~~l 240 (488)
..+...|++++|...+++.... +.. | ....+..+...+...|++++|...+++.........+. ..++..+
T Consensus 101 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 180 (373)
T 1hz4_A 101 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML 180 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHH
Confidence 7777788888888887776542 211 2 23345556667777888888888877765532221111 1345556
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCC-C-HHHHH----HHHHHHHccCChHHHHHHHHHHHhCCCCC---CHHHHHHHH
Q 011323 241 MKACANAGQVDRAREVYKMIHKYNIKG-T-PEVYT----IAINCCSQTGDWEFACSVYDDMTKKGVIP---DEVFLSALI 311 (488)
Q Consensus 241 ~~~~~~~~~~~~a~~~~~~~~~~~~~~-~-~~~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~ 311 (488)
...+...|++++|...++........+ . ..... ..+..+...|++++|...+++.......+ ....+..+.
T Consensus 181 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la 260 (373)
T 1hz4_A 181 IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIA 260 (373)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHH
Confidence 666777777777777777665431111 1 11111 22233556777777777776655432211 122344555
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC----CCCccH-HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011323 312 DFAGHAGKVEAAFEILQEAKNQ----GISVGI-ISYSSLMGACSNAKNWQKALELYEHMK 366 (488)
Q Consensus 312 ~~~~~~g~~~~a~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~ 366 (488)
..+...|++++|...++..... +..++. ..+..+..++...|+.++|...+++..
T Consensus 261 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 261 RAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 320 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 5666666666666666655432 111111 244445555566666666666665554
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.37 E-value=8.8e-11 Score=95.73 Aligned_cols=162 Identities=13% Similarity=0.071 Sum_probs=87.8
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHh
Q 011323 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 351 (488)
Q Consensus 272 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 351 (488)
+..+...+...|++++|...++++.+.... +...+..+...+...|++++|...++++.+.. +.+...+..+...+..
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~ 88 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDADAF-DVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQ 88 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCTTSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence 444444555555555555555554443222 44455555555555555555555555555442 2344555555555556
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHH
Q 011323 352 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLML 431 (488)
Q Consensus 352 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 431 (488)
.|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...
T Consensus 89 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~ 166 (186)
T 3as5_A 89 VQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPH 166 (186)
T ss_dssp HTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 666666666665555443 3345555555566666666666666666655432 33455555666666666666666666
Q ss_pred HHHHHH
Q 011323 432 LSQAKE 437 (488)
Q Consensus 432 ~~~~~~ 437 (488)
++++.+
T Consensus 167 ~~~~~~ 172 (186)
T 3as5_A 167 FKKANE 172 (186)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665554
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.35 E-value=3.1e-10 Score=92.39 Aligned_cols=162 Identities=15% Similarity=0.080 Sum_probs=110.5
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 011323 61 KVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137 (488)
Q Consensus 61 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 137 (488)
...+..++..+...|++++|.+.|+++. +.+..++..+...+...|++++|.+.++.+.+.. +.+...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 3444455666666677777777777654 2455667777777777777777777777776653 44566777777777
Q ss_pred HHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHH
Q 011323 138 AKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAF 217 (488)
Q Consensus 138 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 217 (488)
...|++++|.+.+++..+.. +.+...+..+...+...|++++|...+++..... +.+...+..+...+...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHH
Confidence 77777777777777776653 3456667777777777777777777777776653 345566667777777777777777
Q ss_pred HHHHHHhh
Q 011323 218 DVLAEMNA 225 (488)
Q Consensus 218 ~~~~~~~~ 225 (488)
..+++...
T Consensus 165 ~~~~~~~~ 172 (186)
T 3as5_A 165 PHFKKANE 172 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77776654
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=8.4e-11 Score=115.66 Aligned_cols=162 Identities=13% Similarity=0.064 Sum_probs=77.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 011323 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 315 (488)
Q Consensus 236 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 315 (488)
+++.+..++.+.|++++|.+.|++..+.. +.+..++..+..+|.+.|++++|+..|++..+.... +...+..+..++.
T Consensus 11 al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~~l~ 88 (723)
T 4gyw_A 11 SLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGNTLK 88 (723)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 44455555555555555555555554443 334445555555555555555555555554443322 3444444445555
Q ss_pred hcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHH
Q 011323 316 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTME 395 (488)
Q Consensus 316 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 395 (488)
..|++++|++.|++..+.. +-+...++.+..+|...|++++|...|++..+.. +.+...|..+..++...|++++|.+
T Consensus 89 ~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~A~~ 166 (723)
T 4gyw_A 89 EMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTDYDE 166 (723)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTTHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHHHHH
Confidence 5555555555555444432 2234444444444455555555555554444432 2234444444444444444444444
Q ss_pred HHHHHH
Q 011323 396 VLSDMK 401 (488)
Q Consensus 396 ~~~~~~ 401 (488)
.++++.
T Consensus 167 ~~~kal 172 (723)
T 4gyw_A 167 RMKKLV 172 (723)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=1.5e-10 Score=113.95 Aligned_cols=164 Identities=15% Similarity=0.114 Sum_probs=106.6
Q ss_pred HhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 011323 197 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD-HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIA 275 (488)
Q Consensus 197 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 275 (488)
..+++.+..++.+.|++++|++.|++..+. .|+ ..++..+..+|.+.|++++|...|++..+.. +.+...|..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l----~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nL 83 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEV----FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNM 83 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 456666666777777777777777766653 232 3456666666677777777777777666654 4456666667
Q ss_pred HHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCH
Q 011323 276 INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 355 (488)
Q Consensus 276 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 355 (488)
..++.+.|++++|++.|++..+.... +...+..+..+|...|++++|++.|++..+.. +-+...+..+..++...|++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccH
Confidence 77777777777777777766665433 55666666667777777777777777666654 33456666666677777777
Q ss_pred HHHHHHHHHHHh
Q 011323 356 QKALELYEHMKS 367 (488)
Q Consensus 356 ~~a~~~~~~~~~ 367 (488)
++|.+.++++.+
T Consensus 162 ~~A~~~~~kal~ 173 (723)
T 4gyw_A 162 TDYDERMKKLVS 173 (723)
T ss_dssp TTHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777666666553
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.29 E-value=7.5e-10 Score=93.71 Aligned_cols=195 Identities=12% Similarity=0.038 Sum_probs=140.3
Q ss_pred CCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHH
Q 011323 195 PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI 274 (488)
Q Consensus 195 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 274 (488)
.|+..+......+...|++++|...|++.....+ .++...+..+..++...|++++|...++...+.. +.+...+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~ 81 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTN--NQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIG 81 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccC--CCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHH
Confidence 4567888888888999999999999998877421 1455666668888889999999999999888765 456778888
Q ss_pred HHHHHHccCChHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc--cHHHHHHH
Q 011323 275 AINCCSQTGDWEFACSVYDDMTKKGVIPDE-------VFLSALIDFAGHAGKVEAAFEILQEAKNQGISV--GIISYSSL 345 (488)
Q Consensus 275 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l 345 (488)
+..++...|++++|...+++..+..+. +. ..+..+...+...|++++|+..+++..+.. +. +...+..+
T Consensus 82 l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~l 159 (228)
T 4i17_A 82 KSAAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT-SKKWKTDALYSL 159 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-CHHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-CCcccHHHHHHH
Confidence 899999999999999999988876443 44 457777778888899999999999988764 23 35677777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 011323 346 MGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 402 (488)
Q Consensus 346 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 402 (488)
..+|...| ...++++...+ ..+...|..... ...+.+++|+..+++..+
T Consensus 160 ~~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~~--~~~~~~~~A~~~~~~a~~ 208 (228)
T 4i17_A 160 GVLFYNNG-----ADVLRKATPLA-SSNKEKYASEKA--KADAAFKKAVDYLGEAVT 208 (228)
T ss_dssp HHHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHHH--HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHHH--HHHHHHHHHHHHHHHHhh
Confidence 77775443 34455555443 233444433332 223456677777777665
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.25 E-value=8.3e-11 Score=103.12 Aligned_cols=230 Identities=11% Similarity=-0.009 Sum_probs=148.0
Q ss_pred HccCCHHHHHHHHHHHhhCC-----CCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhc------CC-CCCHHHHHHH
Q 011323 208 GQSGAVDRAFDVLAEMNAEV-----HPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY------NI-KGTPEVYTIA 275 (488)
Q Consensus 208 ~~~g~~~~a~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l 275 (488)
...|++++|+..+++..... ...+....++..+...+...|++++|...++.+.+. +- +....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 34566666666665554310 011123456777888889999999999999887654 11 2235678888
Q ss_pred HHHHHccCChHHHHHHHHHHHhC-----CC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------C-CCccHHH
Q 011323 276 INCCSQTGDWEFACSVYDDMTKK-----GV--IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ------G-ISVGIIS 341 (488)
Q Consensus 276 ~~~~~~~~~~~~a~~~~~~~~~~-----~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~-~~~~~~~ 341 (488)
...+...|++++|...+.+.... +. +....++..+...+...|++++|...+++..+. + .+....+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 88999999999999999887654 11 123567778888889999999999999888764 1 1223567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHcCCChhHHHHHHHHHH---hCC--CCCC
Q 011323 342 YSSLMGACSNAKNWQKALELYEHMKSI-------KLKP-TVSTMNALITALCDGDQLPKTMEVLSDMK---SLG--LCPN 408 (488)
Q Consensus 342 ~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~--~~p~ 408 (488)
+..+...|...|++++|...++++.+. ...+ ....|..+...+...+....+..+..... ..+ .+..
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 888888899999999999999888652 1122 22334334434443333333222211111 111 1223
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 011323 409 TITYSILLVACERKDDVEVGLMLLSQAKE 437 (488)
Q Consensus 409 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 437 (488)
..++..+...+...|++++|..+++++.+
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55678888899999999999999988765
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.21 E-value=2.9e-10 Score=99.60 Aligned_cols=87 Identities=8% Similarity=-0.052 Sum_probs=47.4
Q ss_pred HcCCHhHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CC-CCCHhHHHHHH
Q 011323 139 KSGKVDAMFEVFHEMVNA-------GIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSK------NV-KPDRVVFNALI 204 (488)
Q Consensus 139 ~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~ll 204 (488)
..|++++|.+.+++..+. ..+....++..+...|...|++++|...+++.... +- +....++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 445566666555554431 11123445666666666777777777776666543 11 11234455555
Q ss_pred HHHHccCCHHHHHHHHHHHhh
Q 011323 205 TACGQSGAVDRAFDVLAEMNA 225 (488)
Q Consensus 205 ~~~~~~g~~~~a~~~~~~~~~ 225 (488)
..+...|++++|...+++...
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~ 113 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALE 113 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHH
Confidence 666666666666666665543
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.19 E-value=4.5e-09 Score=90.70 Aligned_cols=251 Identities=11% Similarity=0.063 Sum_probs=154.8
Q ss_pred chhHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHhc
Q 011323 26 SEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASS 105 (488)
Q Consensus 26 ~~~~~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~ 105 (488)
+..+..+....-.|.+..+++-. .+...... ......+.+.+...|+.... ....|.......+...+ ..
T Consensus 14 ~~~lf~ikn~fy~G~yq~~i~e~---~~~~~~~~-~~~~~~~~Rs~iAlg~~~~~-----~~~~~~~~a~~~la~~~-~~ 83 (310)
T 3mv2_B 14 PMDYFNIKQNYYTGNFVQCLQEI---EKFSKVTD-NTLLFYKAKTLLALGQYQSQ-----DPTSKLGKVLDLYVQFL-DT 83 (310)
T ss_dssp -CCTHHHHHHHTTTCHHHHTHHH---HTSSCCCC-HHHHHHHHHHHHHTTCCCCC-----CSSSTTHHHHHHHHHHH-TT
T ss_pred cHHHHHHHHHHHhhHHHHHHHHH---HhcCccch-HHHHHHHHHHHHHcCCCccC-----CCCCHHHHHHHHHHHHh-cc
Confidence 34566778888899999998833 33221111 22333344555555544321 12234443444444433 22
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCCHHHHHHH
Q 011323 106 KDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGI-EPNVHTYGALIDGCAKAGQVAKAFGA 184 (488)
Q Consensus 106 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~ 184 (488)
+ |+..|++....+ +++..++..+..++...|++++|++++.+.+..|. .-+...+..++..+.+.|+.+.|.+.
T Consensus 84 ~----a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~ 158 (310)
T 3mv2_B 84 K----NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTI 158 (310)
T ss_dssp T----CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred c----HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 2 667777666554 45566666777888888888888888888766542 13566777888888888888888888
Q ss_pred HHHHHhCCCCC-----CHhHHHHHHHHH--HccC--CHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCCHHHHHH
Q 011323 185 YGIMRSKNVKP-----DRVVFNALITAC--GQSG--AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRARE 255 (488)
Q Consensus 185 ~~~~~~~~~~~-----~~~~~~~ll~~~--~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 255 (488)
+++|.+. .| +..+...++.++ ...| +..+|..+|+++... .|+..+...++.++.+.|++++|.+
T Consensus 159 l~~~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~----~p~~~~~~lLln~~~~~g~~~eAe~ 232 (310)
T 3mv2_B 159 FDNYTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT----FPTWKTQLGLLNLHLQQRNIAEAQG 232 (310)
T ss_dssp HHHHHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT----SCSHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh----CCCcccHHHHHHHHHHcCCHHHHHH
Confidence 8888765 45 245555555552 2233 788888888887653 2332233344447778888888888
Q ss_pred HHHHHHhcC---------CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCC
Q 011323 256 VYKMIHKYN---------IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 299 (488)
Q Consensus 256 ~~~~~~~~~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 299 (488)
.++.+.+.. -+.++.++..+|......|+ .|.+++.++.+..
T Consensus 233 ~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 233 IVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred HHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 887665431 13456666555555555665 6777777777754
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.15 E-value=1.3e-09 Score=87.90 Aligned_cols=164 Identities=11% Similarity=0.136 Sum_probs=112.2
Q ss_pred CCCchhHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCCC--CCHHHHHHHHH
Q 011323 23 HDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--PTLSTFNMLMS 100 (488)
Q Consensus 23 ~~~~~~~~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~ 100 (488)
......+.....+.+.|++++|+..|+++.+.+ |.+...+..++.++...|++++|+..|+++.. |+...+.....
T Consensus 4 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~ 81 (176)
T 2r5s_A 4 SPDEQLLKQVSELLQQGEHAQALNVIQTLSDEL--QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAK 81 (176)
T ss_dssp --CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHH--HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHH
Confidence 334556677777888999999999999888776 77778888888888888889999998888753 34443332221
Q ss_pred H-HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCH
Q 011323 101 V-CASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEP-NVHTYGALIDGCAKAGQV 178 (488)
Q Consensus 101 ~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~ 178 (488)
. +...+...+|+..++...+.. +.+...+..+..++...|++++|.+.|+++.+....+ +...+..+...+...|+.
T Consensus 82 ~~~~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 160 (176)
T 2r5s_A 82 LELHQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQG 160 (176)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSS
T ss_pred HHHHhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCC
Confidence 2 122233345677777776653 4456777777777778888888888887777653222 245677777777777777
Q ss_pred HHHHHHHHHHH
Q 011323 179 AKAFGAYGIMR 189 (488)
Q Consensus 179 ~~a~~~~~~~~ 189 (488)
++|...|++..
T Consensus 161 ~~A~~~y~~al 171 (176)
T 2r5s_A 161 NAIASKYRRQL 171 (176)
T ss_dssp CHHHHHHHHHH
T ss_pred CcHHHHHHHHH
Confidence 77777777654
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.15 E-value=2.6e-09 Score=94.02 Aligned_cols=129 Identities=10% Similarity=0.014 Sum_probs=63.6
Q ss_pred HHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCC---c--cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-----
Q 011323 306 FLSALIDFAGHA-GKVEAAFEILQEAKNQGIS---V--GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV----- 374 (488)
Q Consensus 306 ~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~---~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----- 374 (488)
++..+..+|... |++++|+..+++..+.... + ...++..+...+.+.|++++|...|++..+.......
T Consensus 119 ~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 198 (292)
T 1qqe_A 119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSL 198 (292)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHH
Confidence 344445555553 5555555555554432100 0 0234555666666666666666666666554321111
Q ss_pred -HHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCH------HHHHHHHHHHh--hcCCHHHHHHHHHHHH
Q 011323 375 -STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT------ITYSILLVACE--RKDDVEVGLMLLSQAK 436 (488)
Q Consensus 375 -~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~------~~~~~l~~~~~--~~g~~~~a~~~~~~~~ 436 (488)
..|..+..++...|++++|...+++..+. .|+. ..+..++.++. ..+++++|+..|+++.
T Consensus 199 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 199 KDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 13455555666666666666666665542 2321 12333444443 3455666666665544
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.13 E-value=2.1e-09 Score=89.40 Aligned_cols=191 Identities=9% Similarity=-0.011 Sum_probs=125.1
Q ss_pred hhHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHhcC
Q 011323 27 EQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSK 106 (488)
Q Consensus 27 ~~~~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~ 106 (488)
..+.....+++.|++++|+..|++..+.+ |.+...+.... ..............+..++...|
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~---------------~~~~~~~~~~~~~~lg~~~~~~g 68 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIALN--IDRTEMYYWTN---------------VDKNSEISSKLATELALAYKKNR 68 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--HHHHHHHHHHH---------------SCTTSHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHhh---------------hcchhhhhHHHHHHHHHHHHHCC
Confidence 34455667779999999999999999876 55554443210 00001112334455777788888
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC--HHHHHHH
Q 011323 107 DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQ--VAKAFGA 184 (488)
Q Consensus 107 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~ 184 (488)
++++|+..|+...+.. +.+...+..+..++...|++++|.+.|++..+.. +.+..++..+...|...|+ .+.+...
T Consensus 69 ~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~ 146 (208)
T 3urz_A 69 NYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETD 146 (208)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 8888888888888764 5567788888888888888888888888888764 3356778778777765543 3445555
Q ss_pred HHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHH
Q 011323 185 YGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 242 (488)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~ 242 (488)
++.... ..|....+.....++...|++++|...|++.... .|+......+.+
T Consensus 147 ~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l----~P~~~~~~~l~~ 198 (208)
T 3urz_A 147 YKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR----FPSTEAQKTLDK 198 (208)
T ss_dssp HC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT----SCCHHHHHHHHH
T ss_pred HHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh----CCCHHHHHHHHH
Confidence 555542 1233333444555666678888888888888753 566555555444
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.12 E-value=1.2e-07 Score=89.48 Aligned_cols=363 Identities=9% Similarity=0.011 Sum_probs=173.1
Q ss_pred cC-CHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCC--CCCHHHHHHHHHHHHhcCC-hhHHHH
Q 011323 38 QG-RISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPTLSTFNMLMSVCASSKD-SEGAFQ 113 (488)
Q Consensus 38 ~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~-~~~a~~ 113 (488)
+| +++.|+.+|+.+...- |. |+.+.+..+|++.. -|+...|...+....+.+. .+....
T Consensus 7 ~~~~i~~aR~vyer~l~~~--P~---------------~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~ 69 (493)
T 2uy1_A 7 MGVELSSPSAIMEHARRLY--MS---------------KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYE 69 (493)
T ss_dssp -----CCHHHHHHHHHHHH--HT---------------TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHH
T ss_pred cCcchHHHHHHHHHHHHHC--CC---------------CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHH
Confidence 45 3666666666665532 21 45677777777655 2566777766666555542 345556
Q ss_pred HHHHHHHc-CC-CCCHHHHHHHHHHHH----HcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-------------
Q 011323 114 VLRLVQEA-GL-KADCKLYTTLITTCA----KSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAK------------- 174 (488)
Q Consensus 114 ~~~~~~~~-~~-~~~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~------------- 174 (488)
+|+..... |. +.+...|...+..+. ..++.+.+.++|++.+......-...|......-..
T Consensus 70 ~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~ 149 (493)
T 2uy1_A 70 VYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDT 149 (493)
T ss_dssp HHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 66665543 32 235566666665543 235566777777777653211111222222111100
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHcc--CC-----HHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhc
Q 011323 175 AGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS--GA-----VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 247 (488)
Q Consensus 175 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~--g~-----~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 247 (488)
.+.+..|..+++.+...--..+...|...+..-... |- .+.+..+|+++... .+.+...|...+..+.+.
T Consensus 150 ~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~---~p~~~~lW~~ya~~~~~~ 226 (493)
T 2uy1_A 150 LPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDS---FYYAEEVYFFYSEYLIGI 226 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH---TTTCHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHc
Confidence 112223333333333210001233444444332211 00 23455666666553 122234555566666677
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCC---------CCC---CHHHHHHHHHHHH
Q 011323 248 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG---------VIP---DEVFLSALIDFAG 315 (488)
Q Consensus 248 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------~~~---~~~~~~~l~~~~~ 315 (488)
|+++.|..+++..... +.+...+.. |......++. ++.+.+.- ..+ ....|...+....
T Consensus 227 ~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~ 297 (493)
T 2uy1_A 227 GQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVL 297 (493)
T ss_dssp TCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHH
Confidence 7777777777777665 333222221 1111111111 22221110 000 1133444455555
Q ss_pred hcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHH
Q 011323 316 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK-NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 394 (488)
Q Consensus 316 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 394 (488)
+.++.+.|..+|... +. ...+...|......-...+ +.+.|..+|+...+.. +.++..|...+....+.|+.+.|.
T Consensus 298 r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR 374 (493)
T 2uy1_A 298 KKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENAR 374 (493)
T ss_dssp HHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 566677777777766 22 1223333432222222222 5777777777666532 223444555555556667777777
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 011323 395 EVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (488)
Q Consensus 395 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 437 (488)
.+|+++. .....|...+.--...|+.+.+..+++++.+
T Consensus 375 ~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 375 ALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7777652 2455566666655666777777776666553
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.12 E-value=5.8e-09 Score=79.68 Aligned_cols=128 Identities=16% Similarity=0.140 Sum_probs=74.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 011323 307 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386 (488)
Q Consensus 307 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 386 (488)
+..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|...++++.... +.+...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 3444555555566666666666555443 2344555555566666666666666666655443 3345555566666666
Q ss_pred CCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 011323 387 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (488)
Q Consensus 387 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 437 (488)
.|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+
T Consensus 82 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 666666666666665532 33455566666666666666666666666654
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.12 E-value=7.9e-09 Score=78.91 Aligned_cols=129 Identities=15% Similarity=0.149 Sum_probs=85.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 011323 94 TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCA 173 (488)
Q Consensus 94 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 173 (488)
.|..+...+...|++++|..+++.+.+.+ +.+...+..+...+...|++++|.+.++++.+.+ +.+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 45556666777777777777777776654 3456666667777777777777777777776653 335566666777777
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhh
Q 011323 174 KAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNA 225 (488)
Q Consensus 174 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 225 (488)
..|++++|.+.++++.... +.+...+..+...+...|++++|...++++..
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 7777777777777766553 33455666666677777777777777766654
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.12 E-value=1.2e-09 Score=107.93 Aligned_cols=170 Identities=8% Similarity=-0.035 Sum_probs=111.0
Q ss_pred HhcCCHHHHHHHHHHHH--------HCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHh
Q 011323 36 IRQGRISECIDLLEDME--------RKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCAS 104 (488)
Q Consensus 36 ~~~g~~~~A~~~~~~~~--------~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~ 104 (488)
...|++++|++.+++.. +.. |.+...+..++..+...|++++|++.|+++. +.+...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~--p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF--SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC--TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc--ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHH
Confidence 56777778887777776 443 5556666666677777777777777776654 3456677777777777
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 011323 105 SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGA 184 (488)
Q Consensus 105 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 184 (488)
.|++++|++.|++..+.. +.+...+..+..++.+.|++++ .+.|++..+.. +.+...|..+..++.+.|++++|++.
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 777777777777776654 3456667777777777777777 77777776653 33556677777777777777777777
Q ss_pred HHHHHhCCCCCC-HhHHHHHHHHHHccCC
Q 011323 185 YGIMRSKNVKPD-RVVFNALITACGQSGA 212 (488)
Q Consensus 185 ~~~~~~~~~~~~-~~~~~~ll~~~~~~g~ 212 (488)
|++..+. .|+ ...+..+..++...+.
T Consensus 557 ~~~al~l--~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPT--SRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTT--STTHHHHHHHHHHHTC----
T ss_pred HHhhccc--CcccHHHHHHHHHHHHccCC
Confidence 7766654 333 4555555555544443
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.12 E-value=1.2e-08 Score=88.29 Aligned_cols=182 Identities=10% Similarity=-0.005 Sum_probs=105.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHccCChHHHHHHHHHHHhCCC-CCC-HHHHHHH
Q 011323 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKGT---PEVYTIAINCCSQTGDWEFACSVYDDMTKKGV-IPD-EVFLSAL 310 (488)
Q Consensus 236 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~-~~~~~~l 310 (488)
.+-.+...+.+.|++++|...|+.+.+.. +.+ ...+..+..++.+.|++++|...|++..+..+ .|. ...+..+
T Consensus 17 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l 95 (261)
T 3qky_A 17 EAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYER 95 (261)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHH
Confidence 44445555666666666666666666543 223 45556666666666666666666666665422 111 3344455
Q ss_pred HHHHHh--------cCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 011323 311 IDFAGH--------AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT 382 (488)
Q Consensus 311 ~~~~~~--------~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 382 (488)
..++.. .|++++|...|+++.+... .+......+.. +..+.. .....+..+..
T Consensus 96 g~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~a~~~--------------~~~~~~----~~~~~~~~la~ 156 (261)
T 3qky_A 96 AMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYP-NHELVDDATQK--------------IRELRA----KLARKQYEAAR 156 (261)
T ss_dssp HHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCT-TCTTHHHHHHH--------------HHHHHH----HHHHHHHHHHH
T ss_pred HHHHHHhcccccccchhHHHHHHHHHHHHHHCc-CchhHHHHHHH--------------HHHHHH----HHHHHHHHHHH
Confidence 555555 5666666666666555431 11111111100 000000 00111356677
Q ss_pred HHHcCCChhHHHHHHHHHHhCCCCCC----HHHHHHHHHHHhhc----------CCHHHHHHHHHHHHHcC
Q 011323 383 ALCDGDQLPKTMEVLSDMKSLGLCPN----TITYSILLVACERK----------DDVEVGLMLLSQAKEDG 439 (488)
Q Consensus 383 ~~~~~~~~~~a~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~ 439 (488)
.|.+.|++++|+..|+++.+. .|+ ...+..+..++... |++++|...++++.+..
T Consensus 157 ~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~ 225 (261)
T 3qky_A 157 LYERRELYEAAAVTYEAVFDA--YPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF 225 (261)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHccCHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC
Confidence 888999999999999998764 233 45677777777765 88899999999988753
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.11 E-value=1.6e-08 Score=87.33 Aligned_cols=248 Identities=11% Similarity=0.004 Sum_probs=156.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcC
Q 011323 169 IDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 248 (488)
Q Consensus 169 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 248 (488)
++-..-.|.+..++.-...+.. .........+.+++...|++... ..-.|....+..+. .|...+
T Consensus 20 ikn~fy~G~yq~~i~e~~~~~~---~~~~~~~~~~~Rs~iAlg~~~~~-----------~~~~~~~~a~~~la-~~~~~~ 84 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIEKFSK---VTDNTLLFYKAKTLLALGQYQSQ-----------DPTSKLGKVLDLYV-QFLDTK 84 (310)
T ss_dssp HHHHHTTTCHHHHTHHHHTSSC---CCCHHHHHHHHHHHHHTTCCCCC-----------CSSSTTHHHHHHHH-HHHTTT
T ss_pred HHHHHHhhHHHHHHHHHHhcCc---cchHHHHHHHHHHHHHcCCCccC-----------CCCCHHHHHHHHHH-HHhccc
Confidence 3444557888888773332221 22233334456778777776531 01123322333333 333322
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 011323 249 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGV-IPDEVFLSALIDFAGHAGKVEAAFEIL 327 (488)
Q Consensus 249 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~ 327 (488)
+...|+.....+ .++...+..+...+...|++++|++++.+.+..+. .-+...+...+..+.+.|+.+.|.+.+
T Consensus 85 ----a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l 159 (310)
T 3mv2_B 85 ----NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIF 159 (310)
T ss_dssp ----CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ----HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 667777766654 45566666788888888999999999888877654 225677778888888899999999999
Q ss_pred HHHHHCCCCc-----cHHHHHHHHHHH--HhcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHH
Q 011323 328 QEAKNQGISV-----GIISYSSLMGAC--SNAK--NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLS 398 (488)
Q Consensus 328 ~~~~~~~~~~-----~~~~~~~l~~~~--~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 398 (488)
+.|.+. .| +..+...+..++ ...| +..+|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++
T Consensus 160 ~~~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~ 235 (310)
T 3mv2_B 160 DNYTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVE 235 (310)
T ss_dssp HHHHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHH
Confidence 888775 34 245555555552 2233 788889999888654 3553333444447888899999998888
Q ss_pred HHHhC-----CC----CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcH
Q 011323 399 DMKSL-----GL----CPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL 444 (488)
Q Consensus 399 ~~~~~-----~~----~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 444 (488)
.+.+. .. +.++.++..++......|+ +|.++++++.+. .|+.
T Consensus 236 ~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~--~P~h 286 (310)
T 3mv2_B 236 LLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL--DHEH 286 (310)
T ss_dssp HHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT--TCCC
T ss_pred HHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh--CCCC
Confidence 76542 00 3356666566666666676 788888888874 3554
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.11 E-value=6.2e-09 Score=90.06 Aligned_cols=101 Identities=10% Similarity=-0.009 Sum_probs=61.8
Q ss_pred CCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-C-CCHhH
Q 011323 125 ADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN---VHTYGALIDGCAKAGQVAKAFGAYGIMRSKNV-K-PDRVV 199 (488)
Q Consensus 125 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~-~~~~~ 199 (488)
.+...+..+...+.+.|++++|.+.|+.+.+.. +.+ ...+..+..+|...|++++|...|++..+... . .....
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 345566666666777777777777777776652 112 45666666777777777777777777765421 1 11334
Q ss_pred HHHHHHHHHc--------cCCHHHHHHHHHHHhhC
Q 011323 200 FNALITACGQ--------SGAVDRAFDVLAEMNAE 226 (488)
Q Consensus 200 ~~~ll~~~~~--------~g~~~~a~~~~~~~~~~ 226 (488)
+..+..++.. .|++++|...|+++...
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 126 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR 126 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH
Confidence 5555566666 66666666666666553
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.10 E-value=3.9e-09 Score=92.94 Aligned_cols=132 Identities=12% Similarity=0.026 Sum_probs=81.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-ccHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCC-CC----H
Q 011323 306 FLSALIDFAGHAGKVEAAFEILQEAKNQ----GIS-VGIISYSSLMGACSNA-KNWQKALELYEHMKSIKLK-PT----V 374 (488)
Q Consensus 306 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~-~~----~ 374 (488)
++..+..+|...|++++|+..+++..+. |-. ....+++.+..+|... |++++|...|++..+.... .+ .
T Consensus 79 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~ 158 (292)
T 1qqe_A 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSN 158 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHH
Confidence 4445555555555555555555544432 100 0134666777777775 8888888888777643110 01 3
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCH------HHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 011323 375 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT------ITYSILLVACERKDDVEVGLMLLSQAKE 437 (488)
Q Consensus 375 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~------~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 437 (488)
.++..+...+.+.|++++|+..+++..+....... ..|..+..++...|++++|...+++..+
T Consensus 159 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 159 KCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS 227 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45777777888888888888888887764221111 1456667777788888888888887765
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.09 E-value=5.2e-09 Score=86.96 Aligned_cols=136 Identities=10% Similarity=-0.047 Sum_probs=88.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC
Q 011323 310 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 389 (488)
Q Consensus 310 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 389 (488)
+..++.+.|++++|+..|++..+.. +.+...+..+..++...|++++|...|+++.+.. +.+...|..+...|...|+
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~ 137 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAE 137 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhH
Confidence 6677778888888888888877764 4467777888888888888888888888887765 4566777777777655443
Q ss_pred --hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Q 011323 390 --LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 451 (488)
Q Consensus 390 --~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 451 (488)
.+.+...++.... ..|....+.....++...|++++|+..|+++.+ ..|+......+.
T Consensus 138 ~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~~l~ 197 (208)
T 3urz_A 138 QEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQKTLD 197 (208)
T ss_dssp HHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHHHHH
Confidence 3344455554432 222233344455566667888888888888776 556655444433
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=4.9e-09 Score=91.92 Aligned_cols=158 Identities=11% Similarity=0.098 Sum_probs=82.4
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCCC--CCHHHHHHHH-HHHHh
Q 011323 28 QLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--PTLSTFNMLM-SVCAS 104 (488)
Q Consensus 28 ~~~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~-~~~~~ 104 (488)
.+.....+.+.|++++|++.|+++.+.. |.+...+..++.++...|++++|...++++.. |+........ ..+..
T Consensus 120 ~~~~a~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~ 197 (287)
T 3qou_A 120 XAQQAMQLMQESNYTDALPLLXDAWQLS--NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLX 197 (287)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHT--TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhC--CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHh
Confidence 3344444455666666666666665554 55555555555566666666666666665542 3332222211 22444
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCCHHHHHH
Q 011323 105 SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIE-PNVHTYGALIDGCAKAGQVAKAFG 183 (488)
Q Consensus 105 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~ 183 (488)
.++.++|+..++...+.. +.+...+..+...+...|++++|.+.|.++.+.... .+...+..++..+...|+.++|..
T Consensus 198 ~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~ 276 (287)
T 3qou_A 198 QAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALAS 276 (287)
T ss_dssp HHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHH
T ss_pred hcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHH
Confidence 455555555555555443 344555555555666666666666666655554211 113455555555555555555555
Q ss_pred HHHHH
Q 011323 184 AYGIM 188 (488)
Q Consensus 184 ~~~~~ 188 (488)
.|++.
T Consensus 277 ~~r~a 281 (287)
T 3qou_A 277 XYRRQ 281 (287)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55543
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=6.2e-09 Score=81.31 Aligned_cols=143 Identities=8% Similarity=-0.060 Sum_probs=102.0
Q ss_pred HHHHHhhhHHHHHHHHHhhhCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 011323 67 FFNVCKSQKAIKEAFRFFKLVPNPT---LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143 (488)
Q Consensus 67 l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 143 (488)
++.++.+.|++++|+..++...+.+ ...+..+...|.+.|++++|++.|++..+.. +-+..+|..+..++...|++
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCch
Confidence 4556677788888888888766433 3355667778888888888888888888764 55778888888888888888
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH-HHHHHhCCCCCCHhHHHHHHHHHHccCC
Q 011323 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGA-YGIMRSKNVKPDRVVFNALITACGQSGA 212 (488)
Q Consensus 144 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 212 (488)
++|...|++..+.. +-+...|..+...|.+.|++++|.+. +++..+.. +-++.+|......+...|+
T Consensus 82 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 82 DKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCc
Confidence 88888888888763 33577888888888888887765554 46666553 3356666666666655553
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.05 E-value=7.1e-08 Score=80.27 Aligned_cols=178 Identities=14% Similarity=0.070 Sum_probs=123.1
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----CHHHHHHHH
Q 011323 252 RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG----KVEAAFEIL 327 (488)
Q Consensus 252 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~a~~~~ 327 (488)
+|.+.|++..+.+ ++..+..+...|...+++++|...|++..+.| +...+..+...|.. + ++++|...|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 3555666665543 55677777777777778888888887777764 45566666666666 5 788888888
Q ss_pred HHHHHCCCCccHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHc----CCChhHHHHHHH
Q 011323 328 QEAKNQGISVGIISYSSLMGACSN----AKNWQKALELYEHMKSIKLK-PTVSTMNALITALCD----GDQLPKTMEVLS 398 (488)
Q Consensus 328 ~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~~ 398 (488)
++..+.+ ++..+..+...|.. .+++++|...|++..+.+.. .+...+..|...|.. .+++++|+..|+
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 8877765 56667777777766 77888888888887766511 125677777777777 777888888888
Q ss_pred HHHhCCCCCCHHHHHHHHHHHhhc-C-----CHHHHHHHHHHHHHcCCC
Q 011323 399 DMKSLGLCPNTITYSILLVACERK-D-----DVEVGLMLLSQAKEDGVI 441 (488)
Q Consensus 399 ~~~~~~~~p~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~~~~~~~~ 441 (488)
+..+. +.+...+..|...|... | ++++|..+|++..+.|..
T Consensus 154 ~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~ 200 (212)
T 3rjv_A 154 GSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFD 200 (212)
T ss_dssp HHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCH
T ss_pred HHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence 88764 23444566666666543 2 788888888888777643
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.02 E-value=1.3e-08 Score=100.54 Aligned_cols=173 Identities=12% Similarity=0.023 Sum_probs=118.0
Q ss_pred HhcCCHHHHHHHHHHHH--------hcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 011323 245 ANAGQVDRAREVYKMIH--------KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 316 (488)
Q Consensus 245 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 316 (488)
...|++++|.+.++... +.. +.+...+..+...+.+.|++++|...+++..+.... +...+..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHH
Confidence 56677777777777776 332 445566777777777778888887777777765443 66677777777777
Q ss_pred cCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHH
Q 011323 317 AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEV 396 (488)
Q Consensus 317 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 396 (488)
.|++++|...|++..+.. +.+...+..+..++.+.|++++ ...|+++.+.+ +.+...|..+..++.+.|++++|++.
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 788888888777777654 3356667777777777777777 77777777654 44566777777777777888888877
Q ss_pred HHHHHhCCCCCC-HHHHHHHHHHHhhcCC
Q 011323 397 LSDMKSLGLCPN-TITYSILLVACERKDD 424 (488)
Q Consensus 397 ~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 424 (488)
|++..+. .|+ ...+..+..++...|+
T Consensus 557 ~~~al~l--~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPT--SRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTT--STTHHHHHHHHHHHTC----
T ss_pred HHhhccc--CcccHHHHHHHHHHHHccCC
Confidence 7777653 444 4556666666655443
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=3e-09 Score=83.12 Aligned_cols=137 Identities=9% Similarity=0.034 Sum_probs=115.6
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHhcCChhHHHH
Q 011323 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQ 113 (488)
Q Consensus 37 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~ 113 (488)
.+|++++|++.++...... |.+...+..++.++...|++++|++.|+++. +.+..+|..+..++...|++++|+.
T Consensus 9 ~~~~~e~ai~~~~~a~~~~--p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~ 86 (150)
T 4ga2_A 9 SKADVERYIASVQGSTPSP--RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVE 86 (150)
T ss_dssp CHHHHHHHHHHHHHHSCSH--HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcChHHHHHHHHHHhcccC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHH
Confidence 6789999999999988765 7777888889999999999999999999864 5678899999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHH-HHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 011323 114 VLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEV-FHEMVNAGIEPNVHTYGALIDGCAKAGQ 177 (488)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 177 (488)
.|+...+.. +-+..++..+..++.+.|+.+++.+. +++..+.. +-+..+|......+...|+
T Consensus 87 ~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 87 CYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCc
Confidence 999999875 55788999999999999999876665 57777763 3467778877777776664
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.97 E-value=9.4e-08 Score=80.44 Aligned_cols=184 Identities=9% Similarity=-0.010 Sum_probs=103.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCC-CH-HHHHHHH
Q 011323 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKG--TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP-DE-VFLSALI 311 (488)
Q Consensus 236 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~-~~~~~l~ 311 (488)
.+..+...+...|++++|...|+.+.+..... ....+..+..++.+.|++++|...|+++.+..+.. .. ..+..+.
T Consensus 6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g 85 (225)
T 2yhc_A 6 EIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRG 85 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHH
Confidence 44455667778888888888888877654211 13567777788888888888888888877654331 11 2333444
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH--------------
Q 011323 312 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM-------------- 377 (488)
Q Consensus 312 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-------------- 377 (488)
.++...|.. .+ ..+..+...+...|++++|...|+++.+.. +.+...+
T Consensus 86 ~~~~~~~~~-----~~------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~a~~~l~~~~~~~~ 147 (225)
T 2yhc_A 86 LTNMALDDS-----AL------------QGFFGVDRSDRDPQQARAAFSDFSKLVRGY-PNSQYTTDATKRLVFLKDRLA 147 (225)
T ss_dssp HHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTTC-TTCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhh-----hh------------hhhhccchhhcCcHHHHHHHHHHHHHHHHC-cCChhHHHHHHHHHHHHHHHH
Confidence 444332110 00 001111222233455555555555555432 1111111
Q ss_pred ---HHHHHHHHcCCChhHHHHHHHHHHhCCCCCC----HHHHHHHHHHHhhcCCHHHHHHHHHHHHHcC
Q 011323 378 ---NALITALCDGDQLPKTMEVLSDMKSLGLCPN----TITYSILLVACERKDDVEVGLMLLSQAKEDG 439 (488)
Q Consensus 378 ---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 439 (488)
..+...|.+.|++++|+..|+++.+. .|+ ...+..+..++.+.|++++|.+.++.+...+
T Consensus 148 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 148 KYEYSVAEYYTERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 23455667778888888888877763 232 2456677777778888888888887776653
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=2.5e-08 Score=87.42 Aligned_cols=162 Identities=10% Similarity=0.007 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHH-HH
Q 011323 127 CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNAL-IT 205 (488)
Q Consensus 127 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-l~ 205 (488)
...+..+...+...|++++|.+.|++..+.. +.+...+..+...+...|++++|...+++.... .|+....... ..
T Consensus 117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~~ 193 (287)
T 3qou_A 117 EELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQI 193 (287)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHHH
Confidence 3344444444455555555555555544432 223444444555555555555555555544433 2222221111 11
Q ss_pred HHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHccCC
Q 011323 206 ACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG-TPEVYTIAINCCSQTGD 284 (488)
Q Consensus 206 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~ 284 (488)
.+...++.++|...+++..... +.+...+..+...+...|++++|...+..+.+..... +...+..++..+...|+
T Consensus 194 ~l~~~~~~~~a~~~l~~al~~~---P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~ 270 (287)
T 3qou_A 194 ELLXQAADTPEIQQLQQQVAEN---PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGT 270 (287)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCT
T ss_pred HHHhhcccCccHHHHHHHHhcC---CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCC
Confidence 2333444444444444444321 1122344444445555555555555555554443111 13445555555555555
Q ss_pred hHHHHHHHHH
Q 011323 285 WEFACSVYDD 294 (488)
Q Consensus 285 ~~~a~~~~~~ 294 (488)
.++|...+++
T Consensus 271 ~~~a~~~~r~ 280 (287)
T 3qou_A 271 GDALASXYRR 280 (287)
T ss_dssp TCHHHHHHHH
T ss_pred CCcHHHHHHH
Confidence 5555554444
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.97 E-value=1.3e-08 Score=81.96 Aligned_cols=160 Identities=12% Similarity=0.096 Sum_probs=81.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HH
Q 011323 237 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF-AG 315 (488)
Q Consensus 237 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~ 315 (488)
+......+...|++++|...++.+.+.. +.+...+..+...+...|++++|...+++...... +.......... +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHHHH
Confidence 4445555666666676666666655543 44556666666666666666666666666554332 33222211111 11
Q ss_pred hcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHcCCChhHHH
Q 011323 316 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP-TVSTMNALITALCDGDQLPKTM 394 (488)
Q Consensus 316 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~ 394 (488)
..++...|...+++..+.. +.+...+..+..++...|++++|...|+++.+....+ +...+..+...+...|+.++|.
T Consensus 86 ~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 1112223445555554432 2234555555555555555555555555555443211 1334555555555555555555
Q ss_pred HHHHHH
Q 011323 395 EVLSDM 400 (488)
Q Consensus 395 ~~~~~~ 400 (488)
..|++.
T Consensus 165 ~~y~~a 170 (176)
T 2r5s_A 165 SKYRRQ 170 (176)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555544
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.96 E-value=6.8e-08 Score=81.31 Aligned_cols=183 Identities=9% Similarity=-0.023 Sum_probs=107.8
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-C-CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCH----HHHH
Q 011323 93 STFNMLMSVCASSKDSEGAFQVLRLVQEAGLK-A-DCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNV----HTYG 166 (488)
Q Consensus 93 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~ 166 (488)
..+..+...+...|++++|+..|+.+.+.... | ....+..+..++.+.|++++|++.|+++.+.. |+. ..+.
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--P~~~~~~~a~~ 82 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN--PTHPNIDYVMY 82 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCcHHHHHH
Confidence 34444555666677777777777777654311 1 12456666777777777777777777776652 221 1333
Q ss_pred HHHHHHHh------------------cCCHHHHHHHHHHHHhCCCCCC-HhHHHHHHHHHHccCCHHHHHHHHHHHhhCC
Q 011323 167 ALIDGCAK------------------AGQVAKAFGAYGIMRSKNVKPD-RVVFNALITACGQSGAVDRAFDVLAEMNAEV 227 (488)
Q Consensus 167 ~l~~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 227 (488)
.+..++.. .|++++|...|+++.+. .|+ ...+...... ..+...+..
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l----------~~~~~~~~~-- 148 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRL----------VFLKDRLAK-- 148 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHH----------HHHHHHHHH--
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHH----------HHHHHHHHH--
Confidence 33333333 45566666666666654 222 2222111100 000000000
Q ss_pred CCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH---HHHHHHHHHHHccCChHHHHHHHHHHHhCCC
Q 011323 228 HPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP---EVYTIAINCCSQTGDWEFACSVYDDMTKKGV 300 (488)
Q Consensus 228 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 300 (488)
....+...+.+.|++++|...|+.+.+.. +.++ ..+..+..++.+.|++++|.+.++.+...++
T Consensus 149 --------~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 149 --------YEYSVAEYYTERGAWVAVVNRVEGMLRDY-PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp --------HHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred --------HHHHHHHHHHHcCcHHHHHHHHHHHHHHC-cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 11345677888899999999999888764 3333 5677888899999999999999988887654
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.96 E-value=1.3e-06 Score=76.14 Aligned_cols=221 Identities=8% Similarity=-0.017 Sum_probs=119.2
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC--CHhHHHHHHHHHHHcCCCCCHHHHHHHHHHH----Hhc---
Q 011323 105 SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG--KVDAMFEVFHEMVNAGIEPNVHTYGALIDGC----AKA--- 175 (488)
Q Consensus 105 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~--- 175 (488)
....++|+++++.+...+ +-+...|+.--.++...| +++++++.++.++... +-+..+|+.-...+ ...
T Consensus 46 ~e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~ 123 (306)
T 3dra_A 46 EEYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNND 123 (306)
T ss_dssp TCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTC
T ss_pred CCCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhcccc
Confidence 334457777777777654 445556666666666666 7777777777776653 23445555444433 333
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHH--HHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCC----
Q 011323 176 GQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVD--RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ---- 249 (488)
Q Consensus 176 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~--~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---- 249 (488)
+++++++..++.+.+.. +-+..+|+.-.-.+.+.|.++ ++++.++.+.... ..|..+|+....++.+.+.
T Consensus 124 ~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d---~~N~sAW~~R~~ll~~l~~~~~~ 199 (306)
T 3dra_A 124 FDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD---LKNNSAWSHRFFLLFSKKHLATD 199 (306)
T ss_dssp CCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHSSGGGCCH
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHhccccchh
Confidence 56667777777666553 345566665555555556555 6666666665531 2233444444444444443
Q ss_pred --HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHH-HHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHH
Q 011323 250 --VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF-ACSVYDDMTKKG--VIPDEVFLSALIDFAGHAGKVEAAF 324 (488)
Q Consensus 250 --~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~ 324 (488)
++++++.++.+.... +.+...++.....+.+.|+... +..+..++...+ -..+...+..+..++.+.|+.++|.
T Consensus 200 ~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~ 278 (306)
T 3dra_A 200 NTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESR 278 (306)
T ss_dssp HHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHH
Confidence 555555555555544 4455555555555555554322 333333333221 1124445555555555555555555
Q ss_pred HHHHHHHH
Q 011323 325 EILQEAKN 332 (488)
Q Consensus 325 ~~~~~~~~ 332 (488)
++++.+.+
T Consensus 279 ~~~~~l~~ 286 (306)
T 3dra_A 279 TVYDLLKS 286 (306)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 55555544
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=1.4e-08 Score=98.60 Aligned_cols=151 Identities=9% Similarity=-0.069 Sum_probs=114.5
Q ss_pred cCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHhcCChhHHHHH
Q 011323 38 QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQV 114 (488)
Q Consensus 38 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~ 114 (488)
.|++++|++.|+++.+.. |.+...+..++..+...|++++|.+.|+++. +.+...+..+...+...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR--PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 578999999999998876 7778888888999999999999999998764 45677888899999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhC
Q 011323 115 LRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKA---GQVAKAFGAYGIMRSK 191 (488)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~ 191 (488)
+++..+.. +.+...+..+..++...|++++|.+.+++..+.. +.+...+..+...+... |+.++|.+.+++..+.
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 99998875 5567889999999999999999999999988874 34678888999999999 9999999999998876
Q ss_pred C
Q 011323 192 N 192 (488)
Q Consensus 192 ~ 192 (488)
+
T Consensus 158 ~ 158 (568)
T 2vsy_A 158 G 158 (568)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.95 E-value=1.2e-06 Score=76.37 Aligned_cols=215 Identities=7% Similarity=-0.005 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccC--CHHHHHHHHHHHhhCCCCCCCC-cchHHHHHHHH----Hhc---C
Q 011323 179 AKAFGAYGIMRSKNVKPDRVVFNALITACGQSG--AVDRAFDVLAEMNAEVHPVDPD-HITIGALMKAC----ANA---G 248 (488)
Q Consensus 179 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~-~~~~~~l~~~~----~~~---~ 248 (488)
++|+++++.++..+ +-+...|+.--.++...| +++++++.++.+... .|. ..+|+.-..++ ... +
T Consensus 50 ~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~----nPk~y~aW~~R~~iL~~~~~~l~~~~ 124 (306)
T 3dra_A 50 ERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALD----NEKNYQIWNYRQLIIGQIMELNNNDF 124 (306)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH----CTTCCHHHHHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHH----CcccHHHHHHHHHHHHHHHHhccccC
Confidence 45556555555543 223444555555555555 566666666655543 222 22333332222 233 4
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChH--HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC------H
Q 011323 249 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWE--FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK------V 320 (488)
Q Consensus 249 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------~ 320 (488)
++++++.+++.+.+.. +.+..+++.-...+.+.|.++ ++++.++++.+..+. |...|+.-.....+.+. +
T Consensus 125 ~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 125 DPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp CTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhH
Confidence 5566666666666554 445555555555555555555 566666666555443 44555444444444433 4
Q ss_pred HHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHH-HHHHHHHHHHhCC--CCCCHHHHHHHHHHHHcCCChhHHHHHH
Q 011323 321 EAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ-KALELYEHMKSIK--LKPTVSTMNALITALCDGDQLPKTMEVL 397 (488)
Q Consensus 321 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 397 (488)
+++++.+..+.... +-|...|+.+...+.+.|+.. .+..+..++.+.+ -..+...+..+...|.+.|+.++|++++
T Consensus 203 ~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~ 281 (306)
T 3dra_A 203 DEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVY 281 (306)
T ss_dssp HHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 44444444444433 224444444444444444322 2223333332211 0123344444444444444444444444
Q ss_pred HHHH
Q 011323 398 SDMK 401 (488)
Q Consensus 398 ~~~~ 401 (488)
+.+.
T Consensus 282 ~~l~ 285 (306)
T 3dra_A 282 DLLK 285 (306)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4444
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.95 E-value=2.1e-07 Score=77.43 Aligned_cols=174 Identities=14% Similarity=-0.024 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC----CHHHHHHHH
Q 011323 110 GAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG----QVAKAFGAY 185 (488)
Q Consensus 110 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~ 185 (488)
+|++.|+...+.| +...+..+...|...+++++|.+.|++..+.| +...+..|...|.. + ++++|++.|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 3455555555543 45555556666666666666666666665543 44555555555555 4 566666666
Q ss_pred HHHHhCCCCCCHhHHHHHHHHHHc----cCCHHHHHHHHHHHhhCCCCCCCC---cchHHHHHHHHHh----cCCHHHHH
Q 011323 186 GIMRSKNVKPDRVVFNALITACGQ----SGAVDRAFDVLAEMNAEVHPVDPD---HITIGALMKACAN----AGQVDRAR 254 (488)
Q Consensus 186 ~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~----~~~~~~a~ 254 (488)
++..+.| +...+..+...|.. .+++++|++.|++.... .++ ...+..+...|.. .+++++|.
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~----~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~ 149 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD----SESDAAVDAQMLLGLIYASGVHGPEDDVKAS 149 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS----TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc----CCCcchHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 6665543 44455555555554 55666666666665543 111 3344455555555 45556666
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHcc------CChHHHHHHHHHHHhCC
Q 011323 255 EVYKMIHKYNIKGTPEVYTIAINCCSQT------GDWEFACSVYDDMTKKG 299 (488)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~------~~~~~a~~~~~~~~~~~ 299 (488)
.+|++..+. +.++..+..+...|... .++++|...|+...+.|
T Consensus 150 ~~~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 150 EYFKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 666555543 12223444444444332 14555555555554443
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.94 E-value=4.2e-06 Score=78.97 Aligned_cols=343 Identities=11% Similarity=0.010 Sum_probs=211.6
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-HhHHHHHHHHHHHc-CC-CCCHHHHHHHHHHHH----hcCCH
Q 011323 106 KDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK-VDAMFEVFHEMVNA-GI-EPNVHTYGALIDGCA----KAGQV 178 (488)
Q Consensus 106 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~-~~-~~~~~~~~~l~~~~~----~~~~~ 178 (488)
|+++.+..+|+..... .|+...|...+....+.++ .+....+|+..... |. ..+...|...+..+. ..++.
T Consensus 28 ~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~ 105 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRI 105 (493)
T ss_dssp TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHH
T ss_pred CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHH
Confidence 8899999999999874 5799999999988888774 45577788877653 53 347788888887654 34678
Q ss_pred HHHHHHHHHHHhCCCCCCHhHHHHHHHHHHc-------------cCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHH
Q 011323 179 AKAFGAYGIMRSKNVKPDRVVFNALITACGQ-------------SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 245 (488)
Q Consensus 179 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-------------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 245 (488)
+.+.++|++........-...|......-.. .+.+..|..+++.+...... .+...|...+..-.
T Consensus 106 ~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~--~s~~~W~~y~~~E~ 183 (493)
T 2uy1_A 106 EKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRG--WSVKNAARLIDLEM 183 (493)
T ss_dssp HHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--CSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhh--ccHHHHHHHHHHHh
Confidence 8999999999874321112233222221111 11233344444444321000 12224444333322
Q ss_pred hc--CC-----HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 011323 246 NA--GQ-----VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 318 (488)
Q Consensus 246 ~~--~~-----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 318 (488)
.. +- .+.+..+|+.+.... +.++..|...+..+.+.|+++.|..++++.... + .+...+. .|....
T Consensus 184 ~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P-~~~~l~~----~y~~~~ 256 (493)
T 2uy1_A 184 ENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-S-DGMFLSL----YYGLVM 256 (493)
T ss_dssp TCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-CSSHHHH----HHHHHT
T ss_pred cCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-C-CcHHHHH----HHHhhc
Confidence 21 11 345677888888764 667888999999999999999999999999887 2 2332222 222221
Q ss_pred CHHHHHHHHHHHHHCC------------CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 011323 319 KVEAAFEILQEAKNQG------------ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386 (488)
Q Consensus 319 ~~~~a~~~~~~~~~~~------------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 386 (488)
+.++. ++.+.+.- .......|...+..+.+.++.+.|..+|++. ... ..+...|......-..
T Consensus 257 e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~ 331 (493)
T 2uy1_A 257 DEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYY 331 (493)
T ss_dssp TCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHH
T ss_pred chhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHH
Confidence 11111 22222110 0112345666777777788999999999998 322 2344555433322222
Q ss_pred -CCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhh--cHHHHHH
Q 011323 387 -GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKART 463 (488)
Q Consensus 387 -~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~--~~~~a~~ 463 (488)
.++.+.|..+|+...+. .+-++..+...+.-....|+.+.|..+|+++. .....|...+..-.. ..+.+..
T Consensus 332 ~~~d~~~ar~ife~al~~-~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~ 405 (493)
T 2uy1_A 332 ATGSRATPYNIFSSGLLK-HPDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRE 405 (493)
T ss_dssp HHCCSHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHH
T ss_pred HCCChHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHH
Confidence 23699999999998874 23345566777887788999999999999873 246677777754333 6777877
Q ss_pred HHHHhhh
Q 011323 464 LNEHVLS 470 (488)
Q Consensus 464 ~~~~~~~ 470 (488)
++++...
T Consensus 406 v~~~~~~ 412 (493)
T 2uy1_A 406 LVDQKMD 412 (493)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666554
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=3.2e-08 Score=96.13 Aligned_cols=154 Identities=12% Similarity=-0.038 Sum_probs=104.8
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHH
Q 011323 210 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 289 (488)
Q Consensus 210 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 289 (488)
.|++++|.+.+++..... +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.
T Consensus 2 ~g~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~ 77 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR---PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAA 77 (568)
T ss_dssp ----------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CccHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 467788888888876531 2234567777788888888888888888887765 556778888888888888888888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhc---CCHHHHHHHHHHHH
Q 011323 290 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA---KNWQKALELYEHMK 366 (488)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~ 366 (488)
+.+++..+.... +...+..+..++...|++++|.+.+++..+.. +.+...+..+..++... |+.++|.+.+++..
T Consensus 78 ~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al 155 (568)
T 2vsy_A 78 VLLQQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAV 155 (568)
T ss_dssp HHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 888887776443 66778888888888888888888888887764 34567777888888888 88888888888877
Q ss_pred hCC
Q 011323 367 SIK 369 (488)
Q Consensus 367 ~~~ 369 (488)
+.+
T Consensus 156 ~~~ 158 (568)
T 2vsy_A 156 AQG 158 (568)
T ss_dssp HHT
T ss_pred hcC
Confidence 654
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.88 E-value=3.1e-07 Score=76.41 Aligned_cols=128 Identities=15% Similarity=-0.012 Sum_probs=108.6
Q ss_pred HHHHHHHHHhhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 011323 63 YHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142 (488)
Q Consensus 63 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 142 (488)
.+..++..+...|++++|++.|+++.+++..++..+...+...|++++|++.++...+.. +.+...+..+..++...|+
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHccc
Confidence 344566667778999999999999888888899999999999999999999999988775 5677889999999999999
Q ss_pred HhHHHHHHHHHHHcCCCCC----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 011323 143 VDAMFEVFHEMVNAGIEPN----------------VHTYGALIDGCAKAGQVAKAFGAYGIMRSKN 192 (488)
Q Consensus 143 ~~~a~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 192 (488)
+++|.+.|+...+.. +.+ ...+..+..+|...|++++|...|++.....
T Consensus 87 ~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 87 YDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 999999999998753 222 2678888999999999999999999998763
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.88 E-value=9e-08 Score=84.85 Aligned_cols=183 Identities=14% Similarity=0.060 Sum_probs=104.5
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCC-----CCHHHHHHHHHHHHccCChHHHHHHHHHHHhC----CCCC-CHHHHHHHHH
Q 011323 243 ACANAGQVDRAREVYKMIHKYNIK-----GTPEVYTIAINCCSQTGDWEFACSVYDDMTKK----GVIP-DEVFLSALID 312 (488)
Q Consensus 243 ~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~ 312 (488)
.|...|++++|...|......... ....+|+.+...|.+.|++++|...+++..+. |-.. ...++..+..
T Consensus 45 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 124 (307)
T 2ifu_A 45 AFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGK 124 (307)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344555555555555544332100 01235556666666677777777766664432 1110 1245566666
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCC---C--ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHH
Q 011323 313 FAGHAGKVEAAFEILQEAKNQGI---S--VGIISYSSLMGACSNAKNWQKALELYEHMKSI----KLKPT-VSTMNALIT 382 (488)
Q Consensus 313 ~~~~~g~~~~a~~~~~~~~~~~~---~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~ 382 (488)
+|.. |++++|+..+++..+... . ....++..+...|.+.|++++|...|++..+. +..+. ...+..+..
T Consensus 125 ~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~ 203 (307)
T 2ifu_A 125 LMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVL 203 (307)
T ss_dssp HHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Confidence 7766 788888777777654310 0 11456777788888888888888888877642 11111 225556666
Q ss_pred HHHcCCChhHHHHHHHHHHhCCCCCC------HHHHHHHHHHHhhcCCHHHHHH
Q 011323 383 ALCDGDQLPKTMEVLSDMKSLGLCPN------TITYSILLVACERKDDVEVGLM 430 (488)
Q Consensus 383 ~~~~~~~~~~a~~~~~~~~~~~~~p~------~~~~~~l~~~~~~~g~~~~a~~ 430 (488)
++...|++++|...|++.. . .|+ ......++.++ ..|+.+.+..
T Consensus 204 ~~~~~g~~~~A~~~~~~al-~--~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 204 VQLHRADYVAAQKCVRESY-S--IPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHTTCHHHHHHHHHHHT-T--STTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHh-C--CCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 7777788888888888877 3 232 12234444544 4666655555
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.87 E-value=4.9e-08 Score=86.55 Aligned_cols=228 Identities=11% Similarity=-0.003 Sum_probs=127.3
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 011323 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLR 116 (488)
Q Consensus 37 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 116 (488)
..|++++|.+++++..+.. +.. ++...+++++|...|.++ ...|...|++++|.+.|.
T Consensus 3 ~~~~~~eA~~~~~~a~k~~--~~~---------~~~~~~~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~ 60 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYL--KTS---------FMKWKPDYDSAASEYAKA-----------AVAFKNAKQLEQAKDAYL 60 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHH--CCC---------SSSCSCCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHc--ccc---------ccCCCCCHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHH
Confidence 4678888888888777543 110 011124555565555442 445666677777777776
Q ss_pred HHHHcCC---CC--CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHc----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHH
Q 011323 117 LVQEAGL---KA--DCKLYTTLITTCAKSGKVDAMFEVFHEMVNA----GIEPN--VHTYGALIDGCAKAGQVAKAFGAY 185 (488)
Q Consensus 117 ~~~~~~~---~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~ 185 (488)
+..+... .+ -..+|+.+..+|...|++++|.+.|++..+. | .+. ..+++.+...|.. |++++|+..|
T Consensus 61 ~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g-~~~~~a~~~~~lg~~~~~-g~~~~A~~~~ 138 (307)
T 2ifu_A 61 QEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENG-TPDTAAMALDRAGKLMEP-LDLSKAVHLY 138 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHc-CCHHHHHHHH
Confidence 6543210 11 1346666777777777777777777665432 1 111 3456666667766 7777777777
Q ss_pred HHHHhC----CCCC-CHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCC--CCC-cchHHHHHHHHHhcCCHHHHHHHH
Q 011323 186 GIMRSK----NVKP-DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPV--DPD-HITIGALMKACANAGQVDRAREVY 257 (488)
Q Consensus 186 ~~~~~~----~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~-~~~~~~l~~~~~~~~~~~~a~~~~ 257 (488)
++.... +-.+ ...++..+...+...|++++|+..|++........ .+. ...+..+..++...|++++|...|
T Consensus 139 ~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~ 218 (307)
T 2ifu_A 139 QQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCV 218 (307)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 766543 1000 13456667777777777777777777665421111 111 124555566666677777777777
Q ss_pred HHHHhcCCC--CC--HHHHHHHHHHHHccCChHHHHH
Q 011323 258 KMIHKYNIK--GT--PEVYTIAINCCSQTGDWEFACS 290 (488)
Q Consensus 258 ~~~~~~~~~--~~--~~~~~~l~~~~~~~~~~~~a~~ 290 (488)
+... .... .. ......++..+ ..|+.+.+..
T Consensus 219 ~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 219 RESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 7766 3211 11 11233444444 4566655555
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.81 E-value=4e-07 Score=75.73 Aligned_cols=125 Identities=10% Similarity=0.022 Sum_probs=71.7
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHh
Q 011323 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 351 (488)
Q Consensus 272 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 351 (488)
+..+...+...|++++|...|++.. .|+...+..+..++...|++++|...+++..+.. +.+...+..+..+|..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence 3445555666666666666665542 3455566666666666666666666666665543 3345556666666666
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCH----------------HHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 011323 352 AKNWQKALELYEHMKSIKLKPTV----------------STMNALITALCDGDQLPKTMEVLSDMKS 402 (488)
Q Consensus 352 ~g~~~~a~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 402 (488)
.|++++|...|++..+.. +.+. ..+..+..+|...|++++|.+.+++..+
T Consensus 84 ~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149 (213)
T ss_dssp TTCHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 666666666666665543 1111 4455555555555666666666555554
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.76 E-value=2.2e-07 Score=69.88 Aligned_cols=96 Identities=6% Similarity=-0.037 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 011323 340 ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 419 (488)
Q Consensus 340 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 419 (488)
..+......|.+.|++++|...|++..+.. +.+...|..+..+|.+.|++++|+..+++.++.. +.+...|..+..++
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHH
Confidence 345555666666666666666666666544 3455666666666666666666666666666532 33455666666666
Q ss_pred hhcCCHHHHHHHHHHHHH
Q 011323 420 ERKDDVEVGLMLLSQAKE 437 (488)
Q Consensus 420 ~~~g~~~~a~~~~~~~~~ 437 (488)
...|++++|++.|+++.+
T Consensus 92 ~~~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQ 109 (126)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHH
Confidence 666666666666666665
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=1.4e-05 Score=70.42 Aligned_cols=182 Identities=6% Similarity=-0.023 Sum_probs=114.5
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-CHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 011323 96 NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG-KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAK 174 (488)
Q Consensus 96 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 174 (488)
+.+.....+....++|+++++.+...+ +-+..+|+.--..+...| ++++++++++.++... +-+..+|+.-...+..
T Consensus 58 ~~~r~~~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~ 135 (349)
T 3q7a_A 58 DYFRAIAAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDR 135 (349)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHH
Confidence 333334455556678888888888765 456667777777777777 4888888888888764 3467777776666666
Q ss_pred c-C-CHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHH--------HHHHHHHHHhhCCCCCCCCcchHHHHHHHH
Q 011323 175 A-G-QVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVD--------RAFDVLAEMNAEVHPVDPDHITIGALMKAC 244 (488)
Q Consensus 175 ~-~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~--------~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 244 (488)
. + +++++++.++++.+.. +-+..+|+.-.-.+.+.|.++ ++++.++++.... ..|..+|+-...++
T Consensus 136 l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d---p~N~SAW~~R~~lL 211 (349)
T 3q7a_A 136 ISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD---GRNNSAWGWRWYLR 211 (349)
T ss_dssp HCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC---TTCHHHHHHHHHHH
T ss_pred hcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC---CCCHHHHHHHHHHH
Confidence 5 6 7788888888887664 446666665544444444443 6666666666531 23444566555555
Q ss_pred HhcCC-------HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCC
Q 011323 245 ANAGQ-------VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD 284 (488)
Q Consensus 245 ~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 284 (488)
.+.+. ++++++.++...... +.|...++.+-..+.+.|.
T Consensus 212 ~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 212 VSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp TTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 55554 566666666666554 4556666555555544443
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.73 E-value=6.4e-07 Score=71.04 Aligned_cols=126 Identities=10% Similarity=-0.032 Sum_probs=67.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 011323 307 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386 (488)
Q Consensus 307 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 386 (488)
+..+...+...|++++|...+....+.. +.+...+..+..++...|++++|...+++..+.. +.+...|..+..++..
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHH
Confidence 4444455555666666666666555543 2345555556666666666666666666655443 3345555556666666
Q ss_pred CCChhHHHHHHHHHHhCCCCCCHHHHHHH--HHHHhhcCCHHHHHHHHHHH
Q 011323 387 GDQLPKTMEVLSDMKSLGLCPNTITYSIL--LVACERKDDVEVGLMLLSQA 435 (488)
Q Consensus 387 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l--~~~~~~~g~~~~a~~~~~~~ 435 (488)
.|++++|...+++..+.. +.+...+..+ +..+...|++++|...++..
T Consensus 94 ~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 94 LGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp TTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 666666666666655431 2233333222 22244555666665555543
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.72 E-value=1.9e-06 Score=75.65 Aligned_cols=159 Identities=8% Similarity=-0.004 Sum_probs=77.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHH------HHHHHHHHHHccCChHHHHHHHHHHHhCCCC-CC----HHHHHH
Q 011323 241 MKACANAGQVDRAREVYKMIHKYNIKGTPE------VYTIAINCCSQTGDWEFACSVYDDMTKKGVI-PD----EVFLSA 309 (488)
Q Consensus 241 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~ 309 (488)
+..+...|++++|...++...... +.++. .+..+...+...+++++|...+++....... ++ ..+++.
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKE-EYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccc-cCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 445566667777777666665532 11111 2223444555555666666666665552111 11 124555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH----C-CCC-ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-HHHHH
Q 011323 310 LIDFAGHAGKVEAAFEILQEAKN----Q-GIS-VGIISYSSLMGACSNAKNWQKALELYEHMKSI----KLKPT-VSTMN 378 (488)
Q Consensus 310 l~~~~~~~g~~~~a~~~~~~~~~----~-~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~-~~~~~ 378 (488)
+..+|...|++++|...++++.+ . +.. ....++..+...|.+.|++++|...+++..+. +..+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 55556666666666666655542 1 111 11224555555555555555555555544321 11111 34444
Q ss_pred HHHHHHHcCCC-hhHHHHHHHHH
Q 011323 379 ALITALCDGDQ-LPKTMEVLSDM 400 (488)
Q Consensus 379 ~l~~~~~~~~~-~~~a~~~~~~~ 400 (488)
.+..+|.+.|+ +++|.+.+++.
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~A 263 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHH
Confidence 55555555552 35555555544
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.72 E-value=7.9e-07 Score=66.77 Aligned_cols=97 Identities=10% Similarity=-0.019 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 011323 93 STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGC 172 (488)
Q Consensus 93 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 172 (488)
..+......+.+.|++++|++.|++..+.. +.+...|..+..++.+.|++++|++.|++.++.. +.+...|..+..++
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHH
Confidence 345556666777777777777777766654 4466677777777777777777777777776653 33566677777777
Q ss_pred HhcCCHHHHHHHHHHHHhC
Q 011323 173 AKAGQVAKAFGAYGIMRSK 191 (488)
Q Consensus 173 ~~~~~~~~a~~~~~~~~~~ 191 (488)
...|++++|++.|++..+.
T Consensus 92 ~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHH
Confidence 7777777777777777665
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.71 E-value=9.4e-07 Score=66.00 Aligned_cols=113 Identities=15% Similarity=0.135 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 011323 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDG 171 (488)
Q Consensus 92 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 171 (488)
...+..+...+...|++++|.+.++.+.+.. +.+..++..+...+...|++++|...++++.+.. +.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 4456666666667777777777777666553 3455666666677777777777777777766553 3355666666666
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHH
Q 011323 172 CAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITAC 207 (488)
Q Consensus 172 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 207 (488)
+...|++++|...++++.... +.+...+..+...+
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 121 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAK 121 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 777777777777776666543 22344444443333
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.71 E-value=1e-06 Score=69.81 Aligned_cols=128 Identities=11% Similarity=0.042 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 011323 93 STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGC 172 (488)
Q Consensus 93 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 172 (488)
..+..+...+...|++++|...++...+.. +.+..++..+..++...|++++|.+.+++..+.. +.+...+..+...+
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 345566667777778888888877777654 4466777777777777788888888777777653 33566777777777
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHhHHHH--HHHHHHccCCHHHHHHHHHHH
Q 011323 173 AKAGQVAKAFGAYGIMRSKNVKPDRVVFNA--LITACGQSGAVDRAFDVLAEM 223 (488)
Q Consensus 173 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--ll~~~~~~g~~~~a~~~~~~~ 223 (488)
...|++++|...|++..... +.+...+.. .+..+...|++++|.+.+...
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 77778877777777776653 223444422 333355667777777766654
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.70 E-value=2.7e-06 Score=74.77 Aligned_cols=162 Identities=6% Similarity=-0.064 Sum_probs=101.4
Q ss_pred HHHHHccCCHHHHHHHHHHHhhCCCCCCCCcc----hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CC----HHHHHH
Q 011323 204 ITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI----TIGALMKACANAGQVDRAREVYKMIHKYNIK-GT----PEVYTI 274 (488)
Q Consensus 204 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~ 274 (488)
+..+...|++++|...+++..... ...|+.. .+..+...+...+++++|...++.+...... ++ ..+++.
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKE-EYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccc-cCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 455566677777777776665531 1122211 2223444555666777777777776653211 11 235777
Q ss_pred HHHHHHccCChHHHHHHHHHHHh----C-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-ccHHHHH
Q 011323 275 AINCCSQTGDWEFACSVYDDMTK----K-GVIP-DEVFLSALIDFAGHAGKVEAAFEILQEAKNQ----GIS-VGIISYS 343 (488)
Q Consensus 275 l~~~~~~~~~~~~a~~~~~~~~~----~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~ 343 (488)
+...|...|++++|...+++..+ . +..+ ...++..+...|.+.|++++|...+++..+. +.. .-..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 77777778888888877777663 1 1111 1236677777888888888888888876642 211 2267788
Q ss_pred HHHHHHHhcCC-HHHHHHHHHHHH
Q 011323 344 SLMGACSNAKN-WQKALELYEHMK 366 (488)
Q Consensus 344 ~l~~~~~~~g~-~~~a~~~~~~~~ 366 (488)
.+..+|.+.|+ +++|...+++..
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHH
Confidence 88888888884 688888888765
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=1.4e-05 Score=70.14 Aligned_cols=184 Identities=8% Similarity=0.030 Sum_probs=128.5
Q ss_pred hcCCHH-HHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHH----------HHHHHHHhhhCC---CCCHHHHHHHHHHH
Q 011323 37 RQGRIS-ECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKA----------IKEAFRFFKLVP---NPTLSTFNMLMSVC 102 (488)
Q Consensus 37 ~~g~~~-~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~~---~~~~~~~~~l~~~~ 102 (488)
+.|+++ +|+++++.++..+ |.+......-..+....+. +++++.+++.+. +.+..+|+.-..++
T Consensus 41 ~~~e~s~eaL~~t~~~L~~n--P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL 118 (331)
T 3dss_A 41 QAGELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLL 118 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 567776 7999999999887 6665555444444444333 677888877664 56777888777777
Q ss_pred HhcC--ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-HhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc----
Q 011323 103 ASSK--DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK-VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKA---- 175 (488)
Q Consensus 103 ~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---- 175 (488)
...+ .+++++++++.+.+.. +.|..+|+.-..++...|. ++++++.++.+++.. +-|...|+.....+...
T Consensus 119 ~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~ 196 (331)
T 3dss_A 119 SRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQP 196 (331)
T ss_dssp HHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSCCC
T ss_pred hccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhhcc
Confidence 7777 4788999999888875 5677888877777778887 588888888888775 44777787766665554
Q ss_pred ----------CCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHcc-----------CCHHHHHHHHHHHhh
Q 011323 176 ----------GQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS-----------GAVDRAFDVLAEMNA 225 (488)
Q Consensus 176 ----------~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-----------g~~~~a~~~~~~~~~ 225 (488)
+.++++++.+.+..... +-|...|+.+-..+.+. +.++++++.++++..
T Consensus 197 ~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle 266 (331)
T 3dss_A 197 DSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQE 266 (331)
T ss_dssp ------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHh
Confidence 34677888888877664 45677776555444443 235566666666654
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.69 E-value=3.3e-07 Score=71.09 Aligned_cols=103 Identities=8% Similarity=-0.021 Sum_probs=81.9
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 011323 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALID 170 (488)
Q Consensus 91 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 170 (488)
+...+..+...+.+.|++++|+..|+...+.. |.+...|..+..++...|++++|++.|++..+.. +.+...|..+..
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~ 112 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHH
Confidence 44466677778888888888888888888765 5577888888888888888888888888888764 335778888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 011323 171 GCAKAGQVAKAFGAYGIMRSKNVKPDR 197 (488)
Q Consensus 171 ~~~~~~~~~~a~~~~~~~~~~~~~~~~ 197 (488)
+|...|++++|...|++..+. .|+.
T Consensus 113 ~~~~lg~~~eA~~~~~~al~l--~~~~ 137 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQH--SNDE 137 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CCCH
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCCH
Confidence 888888888888888888876 3444
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.67 E-value=3.5e-07 Score=73.61 Aligned_cols=120 Identities=13% Similarity=0.125 Sum_probs=82.0
Q ss_pred hcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHcCCCh--hH
Q 011323 316 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA-LCDGDQL--PK 392 (488)
Q Consensus 316 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~--~~ 392 (488)
..|++++|...++...+.. +.+...+..+...|...|++++|...|++..+.. +.+...+..+..+ +...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHH
Confidence 4566777777777766654 3456777777777777888888888777776554 3456666677777 6677777 88
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHc
Q 011323 393 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 438 (488)
Q Consensus 393 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 438 (488)
|...++++.+.. +.+...+..+...+...|++++|...++++.+.
T Consensus 100 A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 100 TRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 888888777642 334667777777788888888888888877764
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=2.6e-07 Score=71.72 Aligned_cols=99 Identities=9% Similarity=-0.082 Sum_probs=75.5
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 011323 338 GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 417 (488)
Q Consensus 338 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 417 (488)
+...+..+...+...|++++|...|+.+.... +.+...|..+..+|...|++++|+..+++..... +.+...+..+..
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~ 97 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHH
Confidence 45566677777888888888888888877654 4567777778888888888888888888877642 335677777888
Q ss_pred HHhhcCCHHHHHHHHHHHHHc
Q 011323 418 ACERKDDVEVGLMLLSQAKED 438 (488)
Q Consensus 418 ~~~~~g~~~~a~~~~~~~~~~ 438 (488)
++...|++++|...|+++.+.
T Consensus 98 ~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 888888888888888887764
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=2.3e-05 Score=69.17 Aligned_cols=185 Identities=10% Similarity=-0.056 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcc-C-ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH------
Q 011323 250 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT-G-DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVE------ 321 (488)
Q Consensus 250 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~------ 321 (488)
+++++..++.+.... +.+..+++.-...+.+. + ++++++++++++.+.... +..+|..-..++.+.|.++
T Consensus 105 l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~ 182 (349)
T 3q7a_A 105 LEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQ 182 (349)
T ss_dssp HHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHH
T ss_pred HHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhh
Confidence 444444444444433 23333443333333332 3 444444444444443332 3333333333333222222
Q ss_pred --HHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCC-------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCh--
Q 011323 322 --AAFEILQEAKNQGISVGIISYSSLMGACSNAKN-------WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL-- 390 (488)
Q Consensus 322 --~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-- 390 (488)
++++.+.++.+.. +-+...|+.....+.+.++ ++++.+.+++++... +-|...|+.+-..+.+.|+.
T Consensus 183 ~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~ 260 (349)
T 3q7a_A 183 WGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLV 260 (349)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcc
Confidence 5555555555543 2244555555545544443 455555555555443 34555555544444444432
Q ss_pred ------------------hHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHc
Q 011323 391 ------------------PKTMEVLSDMKSLG-----LCPNTITYSILLVACERKDDVEVGLMLLSQAKED 438 (488)
Q Consensus 391 ------------------~~a~~~~~~~~~~~-----~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 438 (488)
.+...+..++...+ -.++...+..++..|...|+.++|.++++.+.+.
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 261 PILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp GGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred cccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 12222222222211 1345666777777777777777787777776543
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.66 E-value=2e-07 Score=75.10 Aligned_cols=119 Identities=8% Similarity=0.075 Sum_probs=79.1
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCC---CCCHHHHHHHHHH-HHhcCCh--
Q 011323 35 LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSV-CASSKDS-- 108 (488)
Q Consensus 35 l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~-~~~~~~~-- 108 (488)
+...|++++|+..+++..+.. |.+...+..++..+...|++++|+..|+++. +.+...+..+..+ +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhhccCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcch
Confidence 456788888888888888776 6666667777777777777777777776653 3455666666666 5666776
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHc
Q 011323 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA 156 (488)
Q Consensus 109 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 156 (488)
++|+..++...+.. +.+...+..+..++...|++++|.+.|+...+.
T Consensus 98 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 98 AQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 77777777776653 345566666777777777777777777776665
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.65 E-value=7.3e-06 Score=71.92 Aligned_cols=125 Identities=6% Similarity=-0.017 Sum_probs=51.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCH------HHHHHHHHHHHccCChHHHHHHHHHHHhCCC---CCC--HHHHH
Q 011323 240 LMKACANAGQVDRAREVYKMIHKYNIKGTP------EVYTIAINCCSQTGDWEFACSVYDDMTKKGV---IPD--EVFLS 308 (488)
Q Consensus 240 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~--~~~~~ 308 (488)
.+..+...|++++|.+.+....+.... .. ..+..+...+...|++++|...+.+..+... .+. ..++.
T Consensus 81 ~~~~~~~~~~y~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 2qfc_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEY-HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHhccccC-ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 334444555555555555544433211 11 1122233334444455555555554443211 111 22444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH---CC-CCc--cHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011323 309 ALIDFAGHAGKVEAAFEILQEAKN---QG-ISV--GIISYSSLMGACSNAKNWQKALELYEHM 365 (488)
Q Consensus 309 ~l~~~~~~~g~~~~a~~~~~~~~~---~~-~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 365 (488)
.+...|...|++++|...+++..+ .. ..+ ...++..+...|...|++++|...+++.
T Consensus 160 ~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~ka 222 (293)
T 2qfc_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKA 222 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHH
Confidence 444444455555555555544431 10 000 1134444444445555555555544444
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.65 E-value=4e-06 Score=73.62 Aligned_cols=168 Identities=10% Similarity=0.008 Sum_probs=125.5
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---Ccc--H
Q 011323 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE-----VFLSALIDFAGHAGKVEAAFEILQEAKNQGI---SVG--I 339 (488)
Q Consensus 270 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~--~ 339 (488)
..+...+..+...|++++|.+.+.+..+....... ..+..+...+...|++++|...+.+..+... .+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 34455677888999999999999988775433211 2234455667888999999999999875421 111 4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh---CC-CCC--CHHHHHHHHHHHHcCCChhHHHHHHHHHHhC----CCCC-C
Q 011323 340 ISYSSLMGACSNAKNWQKALELYEHMKS---IK-LKP--TVSTMNALITALCDGDQLPKTMEVLSDMKSL----GLCP-N 408 (488)
Q Consensus 340 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~-~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~p-~ 408 (488)
.+++.+...|...|++++|...+++..+ .. ..+ ...++..+...|...|++++|+..+++..+. +... -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 5889999999999999999999998862 21 111 1257888999999999999999999987642 1111 1
Q ss_pred HHHHHHHHHHHhhcCCHHHH-HHHHHHHHH
Q 011323 409 TITYSILLVACERKDDVEVG-LMLLSQAKE 437 (488)
Q Consensus 409 ~~~~~~l~~~~~~~g~~~~a-~~~~~~~~~ 437 (488)
..+|..+...+.+.|++++| ...++++..
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 66788899999999999999 777887654
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.65 E-value=2.6e-07 Score=71.73 Aligned_cols=100 Identities=9% Similarity=-0.075 Sum_probs=75.4
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 011323 338 GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 417 (488)
Q Consensus 338 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 417 (488)
+...+..+...+.+.|++++|...|+++.... +.+...|..+..+|...|++++|+..|++..+.. +.++..|..+..
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~ 112 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHH
Confidence 34566677777788888888888888887665 4567777888888888888888888888877642 334677778888
Q ss_pred HHhhcCCHHHHHHHHHHHHHcC
Q 011323 418 ACERKDDVEVGLMLLSQAKEDG 439 (488)
Q Consensus 418 ~~~~~g~~~~a~~~~~~~~~~~ 439 (488)
++...|++++|...|+++.+..
T Consensus 113 ~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHcCCHHHHHHHHHHHHHhC
Confidence 8888888888888888887743
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.64 E-value=8.9e-07 Score=77.18 Aligned_cols=191 Identities=10% Similarity=-0.014 Sum_probs=109.2
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHH
Q 011323 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 347 (488)
Q Consensus 268 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 347 (488)
+...+..+...+.+.|++++|...|++..+.... +...+..+..++.+.|++++|...+++..+.. +.+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 4456666677777777777777777777665433 66677777777777777777777777777654 345667777777
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHH
Q 011323 348 ACSNAKNWQKALELYEHMKSIKLKPT-VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 426 (488)
Q Consensus 348 ~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 426 (488)
+|...|++++|...|++..+.. |+ ...+...+....+ ..++. -+........+.+......+... ..|+++
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~i~~~l~~l--~~~~~~ 152 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALR---IAKKK-RWNSIEERRIHQESELHSYLTRL--IAAERE 152 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHH---HHHHH-HHHHHHHTCCCCCCHHHHHHHHH--HHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHH---HHHHH-HHHHHHHHHHhhhHHHHHHHHHH--HHHHHH
Confidence 7888888888888777766432 11 0011111111111 11111 12222222234444444444322 267888
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHh----hcHHHHHHHHHHhhh
Q 011323 427 VGLMLLSQAKEDGVIPNLVMFKCIIGMCS----RRYEKARTLNEHVLS 470 (488)
Q Consensus 427 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~----~~~~~a~~~~~~~~~ 470 (488)
+|++.++++.+ ..|+......-+.... ++++++.++++.+..
T Consensus 153 ~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 153 RELEECQRNHE--GHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHTTTSGGGT--TTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHhhhc--cccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 88888877665 3455544333333222 246677777766543
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.64 E-value=1.3e-06 Score=65.77 Aligned_cols=118 Identities=10% Similarity=0.032 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 011323 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDG 171 (488)
Q Consensus 92 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 171 (488)
...+..+...+...|++++|...++...+.. +.+...+..+..++...|++++|.+.++...+.. +.+...+..+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHH
Confidence 3455566666667777777777777766553 3456666667777777777777777777766653 3345666666677
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCC
Q 011323 172 CAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA 212 (488)
Q Consensus 172 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 212 (488)
+...|++++|...|++..... +.+...+..+..++...|+
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTT
T ss_pred HHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhc
Confidence 777777777777777766553 2345555555555555443
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.63 E-value=1.6e-06 Score=64.64 Aligned_cols=92 Identities=15% Similarity=0.152 Sum_probs=36.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC
Q 011323 308 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 387 (488)
Q Consensus 308 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 387 (488)
..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+...+...
T Consensus 13 ~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~ 90 (125)
T 1na0_A 13 YNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQ 90 (125)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHh
Confidence 333333444444444444444443322 1223333444444444444444444444443322 22333344444444444
Q ss_pred CChhHHHHHHHHHH
Q 011323 388 DQLPKTMEVLSDMK 401 (488)
Q Consensus 388 ~~~~~a~~~~~~~~ 401 (488)
|++++|...++++.
T Consensus 91 ~~~~~A~~~~~~~~ 104 (125)
T 1na0_A 91 GDYDEAIEYYQKAL 104 (125)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHH
Confidence 44444444444443
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.61 E-value=8.1e-07 Score=77.43 Aligned_cols=96 Identities=9% Similarity=-0.093 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHH
Q 011323 127 CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITA 206 (488)
Q Consensus 127 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 206 (488)
...+..+...+...|++++|.+.|+...+.. +.+...|..+..+|.+.|++++|...+++..+.. +.+...+..+..+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 3444445555555555555555555555442 2244555555555555555555555555555442 2234455555555
Q ss_pred HHccCCHHHHHHHHHHHh
Q 011323 207 CGQSGAVDRAFDVLAEMN 224 (488)
Q Consensus 207 ~~~~g~~~~a~~~~~~~~ 224 (488)
+...|++++|...|++..
T Consensus 82 ~~~~g~~~~A~~~~~~al 99 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAY 99 (281)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHH
Confidence 555555555555555543
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.61 E-value=1.3e-06 Score=66.15 Aligned_cols=117 Identities=11% Similarity=0.050 Sum_probs=69.7
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 011323 90 PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALI 169 (488)
Q Consensus 90 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 169 (488)
.+...+..+...+...|++++|+..++...+.. +.+...+..+..++...|++++|.+.+++..+.. +.+...+..+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la 91 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKA 91 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHH
Confidence 344556666666666777777777776666543 3355666666666666677777777776666543 23455666666
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHc
Q 011323 170 DGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQ 209 (488)
Q Consensus 170 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 209 (488)
..+...|++++|.+.|++..... +.+...+..+..++..
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~ 130 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMA 130 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHH
Confidence 66666666766666666665542 2223344444444433
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.60 E-value=1.3e-06 Score=65.94 Aligned_cols=94 Identities=14% Similarity=0.079 Sum_probs=42.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 011323 307 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386 (488)
Q Consensus 307 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 386 (488)
+..+...+...|+++.|...+++..... +.+...+..+...+...|++++|...+++..+.. +.+...+..+...+..
T Consensus 15 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 92 (131)
T 2vyi_A 15 LKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALSS 92 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHHH
Confidence 3334444444444444444444444332 2234444444444444555555555444444332 2234444444444445
Q ss_pred CCChhHHHHHHHHHHh
Q 011323 387 GDQLPKTMEVLSDMKS 402 (488)
Q Consensus 387 ~~~~~~a~~~~~~~~~ 402 (488)
.|++++|...+++..+
T Consensus 93 ~~~~~~A~~~~~~~~~ 108 (131)
T 2vyi_A 93 LNKHVEAVAYYKKALE 108 (131)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHh
Confidence 5555555555544443
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.60 E-value=5.3e-07 Score=74.29 Aligned_cols=156 Identities=10% Similarity=0.019 Sum_probs=87.6
Q ss_pred ccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CccHHHHHHHHHHHHhcCCH
Q 011323 281 QTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ----GI-SVGIISYSSLMGACSNAKNW 355 (488)
Q Consensus 281 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~ 355 (488)
..|++++|.++++.+... .......+..+...+...|++++|...+++..+. +. +.....+..+...+...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 345555555533333221 1123445555555666666666666666655441 11 12244566666777777777
Q ss_pred HHHHHHHHHHHhC----CCCC--CHHHHHHHHHHHHcCCChhHHHHHHHHHHh----CCCCCC--HHHHHHHHHHHhhcC
Q 011323 356 QKALELYEHMKSI----KLKP--TVSTMNALITALCDGDQLPKTMEVLSDMKS----LGLCPN--TITYSILLVACERKD 423 (488)
Q Consensus 356 ~~a~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~p~--~~~~~~l~~~~~~~g 423 (488)
++|...+++..+. +-.+ ....+..+...+...|++++|...+++..+ .+ .+. ..++..+...+...|
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQAD-DQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcc-chHHHHHHHHHHHHHHHHCc
Confidence 7777777665432 1011 133456666677777777777777777553 11 111 234566777778888
Q ss_pred CHHHHHHHHHHHHHc
Q 011323 424 DVEVGLMLLSQAKED 438 (488)
Q Consensus 424 ~~~~a~~~~~~~~~~ 438 (488)
++++|.+.+++..+.
T Consensus 162 ~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 162 NLLEAQQHWLRARDI 176 (203)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 888888888776643
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.59 E-value=1.3e-06 Score=66.10 Aligned_cols=93 Identities=16% Similarity=0.106 Sum_probs=38.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 011323 307 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386 (488)
Q Consensus 307 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 386 (488)
+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+..++..
T Consensus 19 ~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~ 96 (133)
T 2lni_A 19 VKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAALEA 96 (133)
T ss_dssp HHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHH
Confidence 3333344444444444444444443332 1233344444444444444444444444443322 2233344444444444
Q ss_pred CCChhHHHHHHHHHH
Q 011323 387 GDQLPKTMEVLSDMK 401 (488)
Q Consensus 387 ~~~~~~a~~~~~~~~ 401 (488)
.|++++|.+.+++..
T Consensus 97 ~~~~~~A~~~~~~~~ 111 (133)
T 2lni_A 97 MKDYTKAMDVYQKAL 111 (133)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHH
Confidence 444444444444443
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.59 E-value=2.2e-06 Score=72.99 Aligned_cols=185 Identities=10% Similarity=-0.047 Sum_probs=110.0
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCchHHHHHHH-------HHHHhhhHHHHHHHHHhhhCCC--C-------C---------
Q 011323 37 RQGRISECIDLLEDMERKGLLDMDKVYHARF-------FNVCKSQKAIKEAFRFFKLVPN--P-------T--------- 91 (488)
Q Consensus 37 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~A~~~~~~~~~--~-------~--------- 91 (488)
+.++...|++.|.++.+.+ |.....+..+ ...+...++..+++-.+..... | +
T Consensus 18 ~~~d~~~A~~~F~~a~~~d--P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD--ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhC--hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccc
Confidence 6789999999999999887 5555554444 3344444444444444332221 0 1
Q ss_pred ------HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCC--HH
Q 011323 92 ------LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN--VH 163 (488)
Q Consensus 92 ------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~ 163 (488)
...+..+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|. ..
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHH
Confidence 2233445566777777777777777666543 322255555556677777777777776443321 111 23
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HhHHHHHHHHHHccCCHHHHHHHHHHHhhC
Q 011323 164 TYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPD--RVVFNALITACGQSGAVDRAFDVLAEMNAE 226 (488)
Q Consensus 164 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 226 (488)
.+..+..++...|++++|+..|++.......|. .........++.+.|+.++|...|+++...
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 566667777777777777777777764332133 234455556666777777777777777653
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.58 E-value=5.4e-07 Score=74.22 Aligned_cols=131 Identities=17% Similarity=0.047 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHc----CCCC--
Q 011323 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEA----GLK-ADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA----GIEP-- 160 (488)
Q Consensus 92 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-- 160 (488)
..++..+...+...|++++|...+++..+. +.. ....++..+...+...|++++|.+.+++..+. +-.+
T Consensus 26 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 105 (203)
T 3gw4_A 26 SGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLA 105 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHH
Confidence 334444445555555555555555444331 111 12334555555555666666666555554432 1011
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC--HhHHHHHHHHHHccCCHHHHHHHHHHH
Q 011323 161 NVHTYGALIDGCAKAGQVAKAFGAYGIMRSK----NVKPD--RVVFNALITACGQSGAVDRAFDVLAEM 223 (488)
Q Consensus 161 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~ 223 (488)
....+..+...+...|++++|...+++.... + .+. ..++..+...+...|++++|...+++.
T Consensus 106 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 173 (203)
T 3gw4_A 106 ASANAYEVATVALHFGDLAGARQEYEKSLVYAQQAD-DQVAIACAFRGLGDLAQQEKNLLEAQQHWLRA 173 (203)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcc-chHHHHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 1233455555555666666666655554421 1 011 122344445555555555555555444
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.55 E-value=3.5e-07 Score=71.00 Aligned_cols=98 Identities=13% Similarity=0.038 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 011323 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDG 171 (488)
Q Consensus 92 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 171 (488)
...+..+...+...|++++|+..|+...... +.+...|..+..++...|++++|.+.|++..... +.+...+..+..+
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~ 98 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAEC 98 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHH
Confidence 3455556666777777777777777776654 4466677777777777777777777777776653 3355666677777
Q ss_pred HHhcCCHHHHHHHHHHHHhC
Q 011323 172 CAKAGQVAKAFGAYGIMRSK 191 (488)
Q Consensus 172 ~~~~~~~~~a~~~~~~~~~~ 191 (488)
|...|++++|...|++..+.
T Consensus 99 ~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 99 LLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 77777777777777776654
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.54 E-value=2.5e-06 Score=76.46 Aligned_cols=129 Identities=11% Similarity=-0.037 Sum_probs=86.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcc--------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 011323 306 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVG--------------IISYSSLMGACSNAKNWQKALELYEHMKSIKLK 371 (488)
Q Consensus 306 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 371 (488)
.+..+...+.+.|++++|...|++..+...... ...+..+..+|.+.|++++|...++++.+.. +
T Consensus 149 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p 227 (336)
T 1p5q_A 149 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD-S 227 (336)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C
Confidence 344444555555555555555555554331111 4677778888888888888888888887765 4
Q ss_pred CCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHH-HHHHHHHH
Q 011323 372 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVG-LMLLSQAK 436 (488)
Q Consensus 372 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a-~~~~~~~~ 436 (488)
.+...|..+..+|...|++++|+..|++..+.. +.+...+..+...+...|+.+++ ...++.|.
T Consensus 228 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 228 NNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567778888888888888888888888887642 33466777777888888887777 34555544
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.54 E-value=2.5e-06 Score=64.04 Aligned_cols=97 Identities=12% Similarity=0.039 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 011323 339 IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 418 (488)
Q Consensus 339 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 418 (488)
...+......+.+.|++++|...|++..+.. +.+...|..+..++.+.|++++|+..+++..+.. +.+...|..+..+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 3445556666667777777777777666554 3456666667777777777777777777766532 3345666667777
Q ss_pred HhhcCCHHHHHHHHHHHHH
Q 011323 419 CERKDDVEVGLMLLSQAKE 437 (488)
Q Consensus 419 ~~~~g~~~~a~~~~~~~~~ 437 (488)
+...|++++|...++++.+
T Consensus 82 ~~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 82 QIAVKEYASALETLDAART 100 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHH
Confidence 7777777777777776665
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.53 E-value=1.7e-06 Score=73.66 Aligned_cols=131 Identities=11% Similarity=-0.014 Sum_probs=92.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCCC-CC----HHHHHHHHHHHHhc
Q 011323 31 SYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN-PT----LSTFNMLMSVCASS 105 (488)
Q Consensus 31 ~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~----~~~~~~l~~~~~~~ 105 (488)
-...|+..|++++|.++|+.+...+ |... ....+..++...+++++|+..|+.... ++ ...+..+..++...
T Consensus 108 yA~~L~~~g~y~eA~~~l~~~~~~~--p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~L 184 (282)
T 4f3v_A 108 FAACEAAQGNYADAMEALEAAPVAG--SEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANL 184 (282)
T ss_dssp HHHHHHHHTCHHHHHHHHTSSCCTT--CHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcC--CchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHC
Confidence 4466778999999999998887765 5555 666677778888888888888876653 22 23566677788888
Q ss_pred CChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHH
Q 011323 106 KDSEGAFQVLRLVQEAGLKAD--CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYG 166 (488)
Q Consensus 106 ~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 166 (488)
|++++|+..|++.......|. .........++.+.|+.++|..+|+++... .|+...+.
T Consensus 185 G~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~--~P~~~~~~ 245 (282)
T 4f3v_A 185 ALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT--HPEPKVAA 245 (282)
T ss_dssp TCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--SCCHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcHHHHH
Confidence 888888888887764332143 345666677777888888888888888776 44433333
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=7.4e-05 Score=65.62 Aligned_cols=170 Identities=11% Similarity=0.018 Sum_probs=96.7
Q ss_pred HccCCHH-HHHHHHHHHhhCCCCCCCCcch-HHHHHHHHHhcCC----------HHHHHHHHHHHHhcCCCCCHHHHHHH
Q 011323 208 GQSGAVD-RAFDVLAEMNAEVHPVDPDHIT-IGALMKACANAGQ----------VDRAREVYKMIHKYNIKGTPEVYTIA 275 (488)
Q Consensus 208 ~~~g~~~-~a~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l 275 (488)
.+.|.++ +|+++++.+... .|+..+ |+.--.++...+. +++++.+++.+.... +.+..+|+.-
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~----nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR 114 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGA----NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHR 114 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTT----CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHH----CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 3455544 778888887753 455433 4433333333322 456666777666655 4566666666
Q ss_pred HHHHHccC--ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhc
Q 011323 276 INCCSQTG--DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK-VEAAFEILQEAKNQGISVGIISYSSLMGACSNA 352 (488)
Q Consensus 276 ~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 352 (488)
...+.+.+ .+++++.+++.+.+..+. |..+|+.-..++...|. ++++++.+..+.+.. +-+...|+.....+.+.
T Consensus 115 ~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l 192 (331)
T 3dss_A 115 CWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQL 192 (331)
T ss_dssp HHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHH
T ss_pred HHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHh
Confidence 65666655 366777777777766554 66666666666666666 467777777776654 33555555555444433
Q ss_pred --------------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 011323 353 --------------KNWQKALELYEHMKSIKLKPTVSTMNALITALC 385 (488)
Q Consensus 353 --------------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 385 (488)
+.++++.+.+....... +-|...|+.+-..+.
T Consensus 193 ~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~ 238 (331)
T 3dss_A 193 HPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLG 238 (331)
T ss_dssp SCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHH
T ss_pred hhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 23555556655555443 345555554433333
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.52 E-value=9.3e-06 Score=59.70 Aligned_cols=98 Identities=13% Similarity=0.059 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 011323 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDG 171 (488)
Q Consensus 92 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 171 (488)
...+..+...+...|++++|...++...... +.+...+..+..++...|++++|.+.+++..+.. +.+...+..+..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 3455666666777777777777777776653 4456667777777777777777777777766653 3346666677777
Q ss_pred HHhcCCHHHHHHHHHHHHhC
Q 011323 172 CAKAGQVAKAFGAYGIMRSK 191 (488)
Q Consensus 172 ~~~~~~~~~a~~~~~~~~~~ 191 (488)
+...|++++|.+.+++..+.
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHhhHHHHHHHHHHHHHc
Confidence 77777777777777776655
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.52 E-value=1.6e-06 Score=65.26 Aligned_cols=98 Identities=12% Similarity=0.208 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCC--CCCC----HHHHH
Q 011323 340 ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG--LCPN----TITYS 413 (488)
Q Consensus 340 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~p~----~~~~~ 413 (488)
..+..+...+.+.|++++|+..|++.++.. +.+...|..+..+|.+.|++++|++.+++.++.. ..++ ..+|.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 445566677777777777777777776654 3456667777777777777777777777765421 1111 23556
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHc
Q 011323 414 ILLVACERKDDVEVGLMLLSQAKED 438 (488)
Q Consensus 414 ~l~~~~~~~g~~~~a~~~~~~~~~~ 438 (488)
.+..++...|++++|++.|++.++.
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 6667777778888888888777663
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.51 E-value=3.2e-06 Score=66.92 Aligned_cols=100 Identities=18% Similarity=0.058 Sum_probs=79.1
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 011323 337 VGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 416 (488)
Q Consensus 337 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 416 (488)
.+...+..+...+...|++++|...|++..+.. +.+...|..+..+|...|++++|+..+++.++.. +.+...|..+.
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 86 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 345667777788888888888888888887665 4467788888888888888888888888887742 33577788888
Q ss_pred HHHhhcCCHHHHHHHHHHHHHc
Q 011323 417 VACERKDDVEVGLMLLSQAKED 438 (488)
Q Consensus 417 ~~~~~~g~~~~a~~~~~~~~~~ 438 (488)
.++...|++++|...|+++.+.
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHh
Confidence 8888888888888888888775
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.49 E-value=3.9e-06 Score=64.56 Aligned_cols=98 Identities=8% Similarity=-0.048 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 011323 339 IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 418 (488)
Q Consensus 339 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 418 (488)
...+..+...+.+.|++++|...|+++...+ +.+...|..+..+|...|++++|+..+++..... +.++..+..+..+
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 95 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHH
Confidence 3455556666777777777777777776654 4466777777777777777777777777777642 3345667777777
Q ss_pred HhhcCCHHHHHHHHHHHHHc
Q 011323 419 CERKDDVEVGLMLLSQAKED 438 (488)
Q Consensus 419 ~~~~g~~~~a~~~~~~~~~~ 438 (488)
+...|++++|...|+++.+.
T Consensus 96 ~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 77778888888777777654
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.48 E-value=3.5e-06 Score=75.48 Aligned_cols=131 Identities=11% Similarity=-0.029 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCC--------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 011323 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD--------------EVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334 (488)
Q Consensus 269 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 334 (488)
...+..+...+.+.|++++|...|++..+...... ...+..+..++.+.|++++|+..+++..+..
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 45566677777777777777777777766543321 4677888888888888888888888888765
Q ss_pred CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHH-HHHHHHHH
Q 011323 335 ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT-MEVLSDMK 401 (488)
Q Consensus 335 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a-~~~~~~~~ 401 (488)
+.+...+..+..+|...|++++|...|+++.+.. +.+...+..+..++.+.|+.++| ...++.|.
T Consensus 227 -p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 227 -SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467788888888888888888888888887765 45677788888888888888877 44555554
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.47 E-value=2.3e-07 Score=76.26 Aligned_cols=88 Identities=17% Similarity=0.073 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 011323 340 ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 419 (488)
Q Consensus 340 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 419 (488)
..+..+..+|...|++++|...+++..+.. +.+...+..+..+|...|++++|+..|++..+.. +.+...+..+...+
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 166 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCV 166 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHH
Confidence 445555555555566666655555555443 3344555555555555555555555555555421 22344444444444
Q ss_pred hhcCCHHHHH
Q 011323 420 ERKDDVEVGL 429 (488)
Q Consensus 420 ~~~g~~~~a~ 429 (488)
...++.+++.
T Consensus 167 ~~~~~~~~~~ 176 (198)
T 2fbn_A 167 NKLKEARKKD 176 (198)
T ss_dssp HHHHHHHC--
T ss_pred HHHHHHHHHH
Confidence 4444443333
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.47 E-value=7.4e-06 Score=61.41 Aligned_cols=97 Identities=12% Similarity=0.060 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 011323 93 STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGC 172 (488)
Q Consensus 93 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 172 (488)
..+..+...+...|++++|+..|+...+.. +.+...|..+..++.+.|++++|.+.+++..+.. +.+...|..+..++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 455566666777777777777777776654 4466677777777777777777777777777653 33466677777777
Q ss_pred HhcCCHHHHHHHHHHHHhC
Q 011323 173 AKAGQVAKAFGAYGIMRSK 191 (488)
Q Consensus 173 ~~~~~~~~a~~~~~~~~~~ 191 (488)
...|++++|...|++....
T Consensus 83 ~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 83 IAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHh
Confidence 7777777777777776654
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.44 E-value=1.1e-06 Score=72.22 Aligned_cols=142 Identities=8% Similarity=-0.077 Sum_probs=90.4
Q ss_pred hhHHHHHHHHHhhhCCC---CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH----------------HHHHHH
Q 011323 73 SQKAIKEAFRFFKLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADC----------------KLYTTL 133 (488)
Q Consensus 73 ~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------------~~~~~l 133 (488)
..|+++.+.+.++...+ .....+..+...+...|++++|+..|+...+.. +.+. ..+..+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l 94 (198)
T 2fbn_A 16 NLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKNIEISCNLNL 94 (198)
T ss_dssp ------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred hhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHHHHHHHHHHHHHHH
Confidence 34666666666665432 233456667777888888999998888887643 1122 567777
Q ss_pred HHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCH
Q 011323 134 ITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV 213 (488)
Q Consensus 134 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 213 (488)
..++...|++++|.+.++...+.. +.+...+..+..+|...|++++|...|++..... +.+...+..+..++...++.
T Consensus 95 a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~ 172 (198)
T 2fbn_A 95 ATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEA 172 (198)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHH
Confidence 777778888888888887777653 3456677777777778888888888887776653 33455566666665555554
Q ss_pred HHHH
Q 011323 214 DRAF 217 (488)
Q Consensus 214 ~~a~ 217 (488)
+++.
T Consensus 173 ~~~~ 176 (198)
T 2fbn_A 173 RKKD 176 (198)
T ss_dssp HC--
T ss_pred HHHH
Confidence 4444
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.44 E-value=1.5e-05 Score=58.55 Aligned_cols=94 Identities=17% Similarity=0.080 Sum_probs=41.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 011323 307 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 386 (488)
Q Consensus 307 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 386 (488)
+..+...+...|++++|...++...+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+..++..
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~ 84 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEF 84 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHH
Confidence 3333444444444444444444444332 2234444444444444444444444444444332 2234444444444444
Q ss_pred CCChhHHHHHHHHHHh
Q 011323 387 GDQLPKTMEVLSDMKS 402 (488)
Q Consensus 387 ~~~~~~a~~~~~~~~~ 402 (488)
.|++++|.+.+++..+
T Consensus 85 ~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 85 LNRFEEAKRTYEEGLK 100 (118)
T ss_dssp TTCHHHHHHHHHHHHT
T ss_pred HhhHHHHHHHHHHHHH
Confidence 5555555555544443
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.43 E-value=5.3e-06 Score=62.29 Aligned_cols=104 Identities=13% Similarity=0.077 Sum_probs=68.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCC--CCC----HHHHHH
Q 011323 94 TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGI--EPN----VHTYGA 167 (488)
Q Consensus 94 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~~ 167 (488)
++..+...+.+.|++++|++.|++..+.. |.+...|..+..+|...|++++|++.+++.++... .++ ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 45556667777777777777777777654 44566777777777777777777777777665321 111 235566
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHH
Q 011323 168 LIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVF 200 (488)
Q Consensus 168 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 200 (488)
+..++...|++++|++.|++.... .|+..+.
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~ 119 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSE--FRDPELV 119 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHH
Confidence 666777777777777777776654 3454443
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.41 E-value=3.8e-06 Score=64.63 Aligned_cols=97 Identities=8% Similarity=-0.023 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 011323 93 STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGC 172 (488)
Q Consensus 93 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 172 (488)
..+..+...+...|++++|+..|+...... +.+...|..+..++...|++++|.+.|+...... +.+...+..+..+|
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHH
Confidence 345555667777888888888888777664 4567777777788888888888888888877764 33566777777788
Q ss_pred HhcCCHHHHHHHHHHHHhC
Q 011323 173 AKAGQVAKAFGAYGIMRSK 191 (488)
Q Consensus 173 ~~~~~~~~a~~~~~~~~~~ 191 (488)
...|++++|...|+.....
T Consensus 97 ~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 8888888888888777654
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.41 E-value=1.9e-05 Score=73.70 Aligned_cols=198 Identities=11% Similarity=0.025 Sum_probs=100.5
Q ss_pred chhHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCchH---------------HHHHHHHHHHhhhHHHHHHHHHhhhCCC-
Q 011323 26 SEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDK---------------VYHARFFNVCKSQKAIKEAFRFFKLVPN- 89 (488)
Q Consensus 26 ~~~~~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~---------------~~~~~l~~~~~~~~~~~~A~~~~~~~~~- 89 (488)
...+.-...++++|++++|++.|..+.+......+. .....++.++...|++++|.+.+..+.+
T Consensus 5 ~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~ 84 (434)
T 4b4t_Q 5 GSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEY 84 (434)
T ss_dssp THHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 446677888999999999999999999875321111 1233455556666666666666654421
Q ss_pred ----CCH----HHHHHHHHHHHhcCChhHHHHHHHHHHH----cCCCC-CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHc
Q 011323 90 ----PTL----STFNMLMSVCASSKDSEGAFQVLRLVQE----AGLKA-DCKLYTTLITTCAKSGKVDAMFEVFHEMVNA 156 (488)
Q Consensus 90 ----~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 156 (488)
++. .+.+.+-..+...|+++.|.++++.... .+..+ -..++..+...+...|++++|.++++.+...
T Consensus 85 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 164 (434)
T 4b4t_Q 85 MMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLRE 164 (434)
T ss_dssp HHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHH
Confidence 111 1112222233344556666665554432 11111 1334555566666666666666666555432
Q ss_pred --CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC--HhHHHHHHHHHHccCCHHHHHHHHHHH
Q 011323 157 --GIE--P-NVHTYGALIDGCAKAGQVAKAFGAYGIMRSK----NVKPD--RVVFNALITACGQSGAVDRAFDVLAEM 223 (488)
Q Consensus 157 --~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~ 223 (488)
+.. + ...++..++..|...|++++|..++++.... +.++. ...+..+...+...|++++|...|.+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 165 FKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp HTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred HHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 111 1 1234555555666666666666665554321 11111 122333344444555555555544443
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.41 E-value=1.9e-05 Score=60.09 Aligned_cols=100 Identities=7% Similarity=-0.075 Sum_probs=66.0
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 011323 337 VGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 416 (488)
Q Consensus 337 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 416 (488)
.+...+..+...+...|++++|...|+...... +.+...|..+..++...|++++|+..+++..+.. +.+...+..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHH
Confidence 345666666666777777777777777666544 3456666667777777777777777777766542 33456666777
Q ss_pred HHHhhcCCHHHHHHHHHHHHHc
Q 011323 417 VACERKDDVEVGLMLLSQAKED 438 (488)
Q Consensus 417 ~~~~~~g~~~~a~~~~~~~~~~ 438 (488)
.++...|++++|...++++.+.
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHH
Confidence 7777777777777777766653
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.40 E-value=3.7e-06 Score=61.27 Aligned_cols=96 Identities=11% Similarity=0.028 Sum_probs=48.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCC--CHHHHHHHHHH
Q 011323 341 SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP--NTITYSILLVA 418 (488)
Q Consensus 341 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~ 418 (488)
.+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +. +...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADA 85 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHH
Confidence 33444445555555555555555554433 2334445555555555555555555555555431 22 34455555555
Q ss_pred Hhhc-CCHHHHHHHHHHHHHc
Q 011323 419 CERK-DDVEVGLMLLSQAKED 438 (488)
Q Consensus 419 ~~~~-g~~~~a~~~~~~~~~~ 438 (488)
+... |++++|.+.++++.+.
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHhCCHHHHHHHHHHHhhc
Confidence 5555 5555555555555543
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.37 E-value=6e-06 Score=62.13 Aligned_cols=111 Identities=13% Similarity=0.104 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCC--CCC----HHHH
Q 011323 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGI--EPN----VHTY 165 (488)
Q Consensus 92 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~ 165 (488)
...+..+...+...|++++|...++...+.. +.+...+..+...+...|++++|...++...+... .++ ..++
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 3456667777778888888888888777664 45667777778888888888888888887766421 112 5667
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHH
Q 011323 166 GALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALIT 205 (488)
Q Consensus 166 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 205 (488)
..+...+...|++++|.+.|+..... .|+......+..
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~ 120 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQQ 120 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHHH
Confidence 77777788888888888888877765 345544444433
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.37 E-value=8.1e-06 Score=59.40 Aligned_cols=95 Identities=12% Similarity=0.022 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHhHHHHHHHH
Q 011323 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKP--DRVVFNALITA 206 (488)
Q Consensus 129 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~ll~~ 206 (488)
.+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+.. +. +...+..+..+
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADA 85 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHH
Confidence 34444444455555555555555544432 2234444555555555555555555555554442 22 34445555555
Q ss_pred HHcc-CCHHHHHHHHHHHhh
Q 011323 207 CGQS-GAVDRAFDVLAEMNA 225 (488)
Q Consensus 207 ~~~~-g~~~~a~~~~~~~~~ 225 (488)
+... |++++|.+.++....
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGG
T ss_pred HHHHhCCHHHHHHHHHHHhh
Confidence 5555 555555555555544
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.34 E-value=5.1e-06 Score=62.52 Aligned_cols=95 Identities=11% Similarity=0.175 Sum_probs=39.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCC--CCCC----HHHHHHH
Q 011323 342 YSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG--LCPN----TITYSIL 415 (488)
Q Consensus 342 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~p~----~~~~~~l 415 (488)
+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+.. ..++ ..++..+
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 3333444444444444444444443322 2233344444444444444444444444443311 0011 3344444
Q ss_pred HHHHhhcCCHHHHHHHHHHHHH
Q 011323 416 LVACERKDDVEVGLMLLSQAKE 437 (488)
Q Consensus 416 ~~~~~~~g~~~~a~~~~~~~~~ 437 (488)
...+...|++++|.+.++++.+
T Consensus 86 a~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 86 GNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHH
Confidence 4444455555555555544444
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.34 E-value=2.2e-05 Score=59.73 Aligned_cols=97 Identities=7% Similarity=-0.090 Sum_probs=50.7
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 011323 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALID 170 (488)
Q Consensus 91 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 170 (488)
+...+..+...+...|++++|+..|+...+.. +.+...+..+..++...|++++|...++...+.. +.+...+..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHH
Confidence 44455555555555555555555555555443 3344555555555555555555555555555442 223445555555
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 011323 171 GCAKAGQVAKAFGAYGIMR 189 (488)
Q Consensus 171 ~~~~~~~~~~a~~~~~~~~ 189 (488)
++...|++++|...|++..
T Consensus 86 ~~~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAY 104 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHH
Confidence 5555555555555555544
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.34 E-value=8.9e-05 Score=69.03 Aligned_cols=197 Identities=9% Similarity=-0.041 Sum_probs=114.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCH----------------hHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCC
Q 011323 169 IDGCAKAGQVAKAFGAYGIMRSKNVKPDR----------------VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDP 232 (488)
Q Consensus 169 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 232 (488)
.+.+.+.|++++|++.|..+.+....... ..+..+...|...|++++|.+.+..+....... +
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~-~ 89 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQF-A 89 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTS-C
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc-c
Confidence 45567788888888888888765322111 125667777777888888887777765532111 1
Q ss_pred Ccc----hHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHhC--CC-
Q 011323 233 DHI----TIGALMKACANAGQVDRAREVYKMIHKY----NIKG-TPEVYTIAINCCSQTGDWEFACSVYDDMTKK--GV- 300 (488)
Q Consensus 233 ~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~- 300 (488)
+.. +.+.+-..+...|+++.+..+++..... +..+ -..++..+...|...|++++|..++.++... +.
T Consensus 90 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~ 169 (434)
T 4b4t_Q 90 KSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLD 169 (434)
T ss_dssp HHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS
T ss_pred chHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcc
Confidence 111 1122222333456777777777655432 1111 2345666777777777777777777765532 11
Q ss_pred -CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCcc--HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011323 301 -IP-DEVFLSALIDFAGHAGKVEAAFEILQEAKNQ----GISVG--IISYSSLMGACSNAKNWQKALELYEHMK 366 (488)
Q Consensus 301 -~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 366 (488)
.+ ...++..++..|...|++++|..+++..... +.++. ...+..+...+...|++++|...|.+..
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 170 DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 11 2345666677777777777777777765532 11111 2345555566667777777777666554
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.31 E-value=3.5e-05 Score=59.32 Aligned_cols=99 Identities=12% Similarity=-0.003 Sum_probs=73.4
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHH
Q 011323 90 PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD----CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTY 165 (488)
Q Consensus 90 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 165 (488)
.+...+..+...+...|++++|++.|+...+. .|+ ...+..+..++...|++++|.+.++...+.. +.+...+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 102 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKAL 102 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHH
Confidence 45667777777788888888888888887765 344 5677777777888888888888888777653 3356677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011323 166 GALIDGCAKAGQVAKAFGAYGIMRSK 191 (488)
Q Consensus 166 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 191 (488)
..+..++...|++++|...|++....
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 77777888888888888888877765
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.31 E-value=2e-05 Score=62.26 Aligned_cols=99 Identities=10% Similarity=-0.023 Sum_probs=75.4
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 011323 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALID 170 (488)
Q Consensus 91 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 170 (488)
+...+..+...+...|++++|++.|+...+.. +.+...|..+..++...|++++|++.|++.++.. +.+...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 44566677777888888888888888877764 4467778888888888888888888888877764 335777778888
Q ss_pred HHHhcCCHHHHHHHHHHHHhC
Q 011323 171 GCAKAGQVAKAFGAYGIMRSK 191 (488)
Q Consensus 171 ~~~~~~~~~~a~~~~~~~~~~ 191 (488)
+|...|++++|...|++..+.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHh
Confidence 888888888888888877765
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.28 E-value=1.3e-05 Score=59.45 Aligned_cols=94 Identities=10% Similarity=-0.057 Sum_probs=55.9
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 011323 96 NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKA 175 (488)
Q Consensus 96 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 175 (488)
..+...+.+.|++++|+..|+...+.. +.+...|..+..++...|++++|+..|++..+.. +.+...+..+..++...
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 334455566666666666666666543 3455566666666666666666666666666553 22455566666666666
Q ss_pred CCHHHHHHHHHHHHhC
Q 011323 176 GQVAKAFGAYGIMRSK 191 (488)
Q Consensus 176 ~~~~~a~~~~~~~~~~ 191 (488)
|++++|+..|++..+.
T Consensus 99 g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 99 HNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHh
Confidence 6666666666666543
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.28 E-value=7.4e-06 Score=60.87 Aligned_cols=92 Identities=11% Similarity=0.013 Sum_probs=54.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcC
Q 011323 344 SLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 423 (488)
Q Consensus 344 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 423 (488)
.+...+.+.|++++|...|++..+.. +.+...|..+..++...|++++|+..+++..+.. +.+...+..+..++...|
T Consensus 22 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 22 EEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEH 99 (121)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 34455556666666666666665543 3355556666666666666666666666665531 223555556666666666
Q ss_pred CHHHHHHHHHHHHH
Q 011323 424 DVEVGLMLLSQAKE 437 (488)
Q Consensus 424 ~~~~a~~~~~~~~~ 437 (488)
++++|+..++++.+
T Consensus 100 ~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 100 NANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHH
Confidence 66666666666554
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.27 E-value=4.5e-05 Score=58.70 Aligned_cols=94 Identities=12% Similarity=-0.025 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHH
Q 011323 270 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD----EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSL 345 (488)
Q Consensus 270 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 345 (488)
..+..+...+...|++++|...|++..+.. |+ ...+..+..++...|++++|...++...+.. +.+...+..+
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~ 105 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYRR 105 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHHH
Confidence 334444444444444444444444444322 22 2333333444444444444444444443332 1223334444
Q ss_pred HHHHHhcCCHHHHHHHHHHHH
Q 011323 346 MGACSNAKNWQKALELYEHMK 366 (488)
Q Consensus 346 ~~~~~~~g~~~~a~~~~~~~~ 366 (488)
..++...|++++|...|++..
T Consensus 106 a~~~~~~~~~~~A~~~~~~al 126 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCV 126 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHH
Confidence 444444444444444444443
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.21 E-value=1.1e-06 Score=65.14 Aligned_cols=86 Identities=14% Similarity=-0.008 Sum_probs=48.8
Q ss_pred cCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHH
Q 011323 352 AKNWQKALELYEHMKSIK--LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGL 429 (488)
Q Consensus 352 ~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 429 (488)
.|++++|...|++..+.+ -+.+...+..+..+|...|++++|+..+++..+.. +-+...+..+..++...|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 455666666666666542 12234455566666666666666666666666532 334556666666666666666666
Q ss_pred HHHHHHHHc
Q 011323 430 MLLSQAKED 438 (488)
Q Consensus 430 ~~~~~~~~~ 438 (488)
..+++..+.
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 666666554
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.20 E-value=1.9e-05 Score=62.23 Aligned_cols=102 Identities=11% Similarity=0.007 Sum_probs=65.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC--------C---------CCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhC
Q 011323 341 SYSSLMGACSNAKNWQKALELYEHMKSI--------K---------LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL 403 (488)
Q Consensus 341 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~--------~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 403 (488)
.+......+.+.|++++|...|.+.... . -+.+...|..+..+|.+.|++++|+..+++.++.
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 3444445555555555555555554432 0 0223456777777788888888888888887764
Q ss_pred CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHH
Q 011323 404 GLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 445 (488)
Q Consensus 404 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 445 (488)
. +.+...|..+..++...|++++|...|+++.+. .|+..
T Consensus 93 ~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~p~~~ 131 (162)
T 3rkv_A 93 E-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN--HPAAA 131 (162)
T ss_dssp S-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CGGGH
T ss_pred C-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc--CCCCH
Confidence 2 345677777888888888888888888887774 45543
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.14 E-value=0.00013 Score=54.49 Aligned_cols=92 Identities=10% Similarity=-0.049 Sum_probs=58.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCC---HHHHHHHHHH
Q 011323 98 LMSVCASSKDSEGAFQVLRLVQEAGLKADC---KLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPN---VHTYGALIDG 171 (488)
Q Consensus 98 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~ 171 (488)
+...+...|++++|.+.|+.+.+.. +.+. ..+..+..++...|++++|.+.|+...+.. +.+ ...+..+..+
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHH
Confidence 4455666777777777777766543 2222 456666667777777777777777766652 112 4556666667
Q ss_pred HHhcCCHHHHHHHHHHHHhC
Q 011323 172 CAKAGQVAKAFGAYGIMRSK 191 (488)
Q Consensus 172 ~~~~~~~~~a~~~~~~~~~~ 191 (488)
+...|++++|...|+++...
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 77777777777777776654
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.13 E-value=2.6e-05 Score=61.04 Aligned_cols=132 Identities=13% Similarity=0.011 Sum_probs=74.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---C--ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHH
Q 011323 306 FLSALIDFAGHAGKVEAAFEILQEAKNQGI---S--VGIISYSSLMGACSNAKNWQKALELYEHMKSI----KLKP-TVS 375 (488)
Q Consensus 306 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~ 375 (488)
++..+...+...|++++|...+++..+... . .....+..+...+...|++++|...+++..+. +..+ ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 344444555555556655555555443210 0 01135556666666777777777766665432 1000 134
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 011323 376 TMNALITALCDGDQLPKTMEVLSDMKSL----GLCP-NTITYSILLVACERKDDVEVGLMLLSQAKE 437 (488)
Q Consensus 376 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 437 (488)
.+..+...+...|++++|.+.+++..+. +.++ ....+..+...+...|++++|.+.+++..+
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 4556666777777777777777765431 1111 134566677777788888888888877654
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.13 E-value=4.4e-05 Score=60.08 Aligned_cols=69 Identities=14% Similarity=0.065 Sum_probs=53.4
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCH
Q 011323 338 GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT 409 (488)
Q Consensus 338 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~ 409 (488)
+...|..+..+|.+.|++++|...+++..+.. +.+...|..+..+|...|++++|...|++..+. .|+.
T Consensus 62 ~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~p~~ 130 (162)
T 3rkv_A 62 NIPLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN--HPAA 130 (162)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CGGG
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc--CCCC
Confidence 34677778888888888888888888887765 456778888888888888888888888888763 4553
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.12 E-value=1.8e-05 Score=74.47 Aligned_cols=121 Identities=12% Similarity=0.040 Sum_probs=89.1
Q ss_pred HHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCC
Q 011323 275 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 354 (488)
Q Consensus 275 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 354 (488)
+...+.+.|++++|.+.+++..+.... +...+..+..+|.+.|++++|++.+++..+.. +.+...+..+..+|...|+
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 344567788899999998888876443 67788888888888899999999988888875 4467788888888888899
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHcCCChhHHHHHHH
Q 011323 355 WQKALELYEHMKSIKLKPTVSTMNALITA--LCDGDQLPKTMEVLS 398 (488)
Q Consensus 355 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~ 398 (488)
+++|.+.+++..+.. +.+...+..+..+ +.+.|++++|++.++
T Consensus 90 ~~eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 90 FRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999998888887654 2334455555555 777888888888887
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.11 E-value=0.00012 Score=54.84 Aligned_cols=23 Identities=17% Similarity=0.163 Sum_probs=9.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 011323 344 SLMGACSNAKNWQKALELYEHMK 366 (488)
Q Consensus 344 ~l~~~~~~~g~~~~a~~~~~~~~ 366 (488)
.+..++...|++++|...++++.
T Consensus 44 ~lg~~~~~~~~~~~A~~~~~~~~ 66 (129)
T 2xev_A 44 WLGESYYATRNFQLAEAQFRDLV 66 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHH
Confidence 33334444444444444444433
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.09 E-value=2.6e-05 Score=61.06 Aligned_cols=131 Identities=12% Similarity=-0.014 Sum_probs=74.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCC-CCC----HH
Q 011323 94 TFNMLMSVCASSKDSEGAFQVLRLVQEAGLK-AD----CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGI-EPN----VH 163 (488)
Q Consensus 94 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~ 163 (488)
++..+...+...|++++|+..+++..+.... ++ ..++..+...+...|++++|.+.+++..+... .++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4555666677777777777777665542100 11 13566677777777777777777776554210 011 33
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHhHHHHHHHHHHccCCHHHHHHHHHHHh
Q 011323 164 TYGALIDGCAKAGQVAKAFGAYGIMRSK----NVKP-DRVVFNALITACGQSGAVDRAFDVLAEMN 224 (488)
Q Consensus 164 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 224 (488)
++..+...+...|++++|...+++.... +..+ ...++..+...+...|++++|.+.+++..
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 5566666777777777777777665432 1100 12334445555556666666666655543
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.08 E-value=5.7e-05 Score=70.77 Aligned_cols=96 Identities=6% Similarity=0.027 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 011323 339 IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 418 (488)
Q Consensus 339 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 418 (488)
...|..+..+|.+.|++++|...++++.+.. +.+...|..+..+|...|++++|+..|++.++.. +-+...+..+..+
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~ 394 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMC 394 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 4667777778888888888888888877665 4567777778888888888888888888877642 2245566777777
Q ss_pred HhhcCCHHHHHH-HHHHHH
Q 011323 419 CERKDDVEVGLM-LLSQAK 436 (488)
Q Consensus 419 ~~~~g~~~~a~~-~~~~~~ 436 (488)
+.+.|+.+++.+ .++.|.
T Consensus 395 ~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 395 QKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp HHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 777777766553 344443
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.07 E-value=6.4e-05 Score=68.09 Aligned_cols=119 Identities=9% Similarity=0.039 Sum_probs=57.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCC---------------CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 011323 307 LSALIDFAGHAGKVEAAFEILQEAKNQG---------------ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK 371 (488)
Q Consensus 307 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~---------------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 371 (488)
+..+...+.+.|++++|+..|++..+.- .+.+...|..+..+|.+.|++++|...++++.+.. +
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p 304 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID-P 304 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-T
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-c
Confidence 3444445555555555555555544310 01223445555555555555555555555555443 2
Q ss_pred CCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHH
Q 011323 372 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEV 427 (488)
Q Consensus 372 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 427 (488)
.+...|..+..+|...|++++|+..|++..+.. +.+...+..+...+...++.++
T Consensus 305 ~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~ 359 (370)
T 1ihg_A 305 SNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKD 359 (370)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555554421 1233344444444444444433
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.05 E-value=9.4e-05 Score=69.27 Aligned_cols=122 Identities=7% Similarity=-0.050 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC---------------HHHHHHHHHHHHHcCCHhHHHHHHHHHHHcC
Q 011323 93 STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD---------------CKLYTTLITTCAKSGKVDAMFEVFHEMVNAG 157 (488)
Q Consensus 93 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 157 (488)
..|..+...+.+.|++++|+..|++..+.. +.+ ...|..+..++.+.|++++|+..+++.++..
T Consensus 269 ~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 269 AIVKEKGTVYFKGGKYMQAVIQYGKIVSWL-EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 356666667777777777777777766542 112 3455555556666666666666666655542
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHH
Q 011323 158 IEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAF 217 (488)
Q Consensus 158 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 217 (488)
+.+...|..+..+|...|++++|+..|++..+.. +-+...+..+..++.+.++.+++.
T Consensus 348 -p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 348 -SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHH
T ss_pred -CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 2245555555556666666666666666555442 223444455555555555554443
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.05 E-value=1.8e-05 Score=74.57 Aligned_cols=119 Identities=12% Similarity=0.054 Sum_probs=89.8
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 011323 100 SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVA 179 (488)
Q Consensus 100 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 179 (488)
..+.+.|++++|++.+++..+.. +.+..+|..+..++.+.|++++|.+.+++..+.. +.+...+..+..+|...|+++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 34567788999999998888764 4567888889999999999999999999988874 346778888889999999999
Q ss_pred HHHHHHHHHHhCCCCCCHhHHHHHHHH--HHccCCHHHHHHHHH
Q 011323 180 KAFGAYGIMRSKNVKPDRVVFNALITA--CGQSGAVDRAFDVLA 221 (488)
Q Consensus 180 ~a~~~~~~~~~~~~~~~~~~~~~ll~~--~~~~g~~~~a~~~~~ 221 (488)
+|.+.|++..+.. +.+...+..+..+ +.+.|++++|++.++
T Consensus 92 eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999888763 2234455555555 777888888988887
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.00 E-value=9.2e-05 Score=67.06 Aligned_cols=121 Identities=10% Similarity=0.003 Sum_probs=68.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHc---------------CCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCC
Q 011323 94 TFNMLMSVCASSKDSEGAFQVLRLVQEA---------------GLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGI 158 (488)
Q Consensus 94 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 158 (488)
.+..+...+.+.|++++|++.|++..+. --+.+..+|..+..++.+.|++++|++.+++.++..
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~- 303 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID- 303 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-
Confidence 4566667778888888888888777651 001233455556666666666666666666665542
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHH
Q 011323 159 EPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRA 216 (488)
Q Consensus 159 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a 216 (488)
+.+...|..+..+|...|++++|+..|++..+.. +.+...+..+..++...++.+++
T Consensus 304 p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 304 PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 2245555566666666666666666666655542 22344444444444444444333
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.98 E-value=2.7e-05 Score=57.41 Aligned_cols=86 Identities=12% Similarity=-0.073 Sum_probs=55.7
Q ss_pred cCChhHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 011323 105 SKDSEGAFQVLRLVQEAG--LKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAF 182 (488)
Q Consensus 105 ~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 182 (488)
.|++++|+..|++..+.+ -+.+...+..+..++...|++++|.+.|++..+.. +-+...+..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 466777777777776543 12344566777777777777777777777777663 334666777777777777777777
Q ss_pred HHHHHHHhC
Q 011323 183 GAYGIMRSK 191 (488)
Q Consensus 183 ~~~~~~~~~ 191 (488)
..+++....
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 777776654
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.96 E-value=2.9e-05 Score=69.50 Aligned_cols=151 Identities=9% Similarity=-0.085 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 011323 304 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA 383 (488)
Q Consensus 304 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 383 (488)
...+..+...+.+.|++++|...|++..+.. |+... +...|+.+++...+ . ...|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l---~-------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAV---K-------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHH---H-------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHH---H-------HHHHHHHHHH
Confidence 3445556666667777777777777766542 22221 12223333322211 0 1367778888
Q ss_pred HHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH-h---hcHH
Q 011323 384 LCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC-S---RRYE 459 (488)
Q Consensus 384 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~-~---~~~~ 459 (488)
|.+.|++++|+..+++.++.. +.+...|..+..++...|++++|...|+++.+. .|+.......+..+ . ...+
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~~~~~ 316 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAEQEKALYQ 316 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888887642 345777888888888888888888888887753 34433322222222 1 1566
Q ss_pred HHHHHHHHhhhccCCCC
Q 011323 460 KARTLNEHVLSFNSGRP 476 (488)
Q Consensus 460 ~a~~~~~~~~~~~~~~~ 476 (488)
++...++++....|.++
T Consensus 317 ~a~~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 317 KQKEMYKGIFKGKDEGG 333 (338)
T ss_dssp -----------------
T ss_pred HHHHHHHHhhCCCCCCC
Confidence 67777777766665554
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.93 E-value=0.00044 Score=53.03 Aligned_cols=110 Identities=11% Similarity=-0.019 Sum_probs=70.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC------C-----HHHHHHHHHHHHcCCChhHHHHHHHHHHhC-----CC
Q 011323 342 YSSLMGACSNAKNWQKALELYEHMKSIKLKP------T-----VSTMNALITALCDGDQLPKTMEVLSDMKSL-----GL 405 (488)
Q Consensus 342 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~------~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~ 405 (488)
+......+.+.|++++|...|++..+..... + ...|..+..++.+.|++++|+..+++.++. .+
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 3444555566666666666666665432110 2 227777777778888888888887777662 11
Q ss_pred CCC-HHHH----HHHHHHHhhcCCHHHHHHHHHHHHHc-----CCCCcHHHHHHHH
Q 011323 406 CPN-TITY----SILLVACERKDDVEVGLMLLSQAKED-----GVIPNLVMFKCII 451 (488)
Q Consensus 406 ~p~-~~~~----~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~~~~~li 451 (488)
.|+ ...| .....++...|++++|+..|++..+. ++.+........+
T Consensus 94 ~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~~ 149 (159)
T 2hr2_A 94 NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVA 149 (159)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHH
T ss_pred CCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 554 4567 77788888888888888888887653 5555554444443
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.86 E-value=6e-05 Score=67.46 Aligned_cols=148 Identities=9% Similarity=0.000 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHH
Q 011323 269 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA 348 (488)
Q Consensus 269 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 348 (488)
...+..+...+.+.|++++|...|.+..... |+... +...|+..++...+. ...|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 4567788889999999999999999988753 33321 223334444433221 2367788888
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHH-HhhcCCHH
Q 011323 349 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN-TITYSILLVA-CERKDDVE 426 (488)
Q Consensus 349 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~-~~~~g~~~ 426 (488)
|.+.|++++|...+++..+.. +.+...|..+..+|...|++++|...|++..+. .|+ ...+..+... ....+..+
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~~~~~ 316 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAEQEKALYQ 316 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999888765 456788888889999999999999999988763 444 4444444444 23345667
Q ss_pred HHHHHHHHHHHc
Q 011323 427 VGLMLLSQAKED 438 (488)
Q Consensus 427 ~a~~~~~~~~~~ 438 (488)
.+...|+.|...
T Consensus 317 ~a~~~~~~~l~~ 328 (338)
T 2if4_A 317 KQKEMYKGIFKG 328 (338)
T ss_dssp ------------
T ss_pred HHHHHHHHhhCC
Confidence 777788777653
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.85 E-value=0.00029 Score=54.08 Aligned_cols=94 Identities=12% Similarity=0.015 Sum_probs=64.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCC-----------ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-------C
Q 011323 308 SALIDFAGHAGKVEAAFEILQEAKNQGIS-----------VGIISYSSLMGACSNAKNWQKALELYEHMKSI-------K 369 (488)
Q Consensus 308 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-----------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~ 369 (488)
......+.+.|++++|+..|++..+.... .+...|..+..++.+.|++++|+..+++.++. +
T Consensus 15 ~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~ 94 (159)
T 2hr2_A 15 LSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN 94 (159)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCC
Confidence 33344455555666666666555543211 01237888888888888888888888888765 4
Q ss_pred CCCCHHHH----HHHHHHHHcCCChhHHHHHHHHHHh
Q 011323 370 LKPTVSTM----NALITALCDGDQLPKTMEVLSDMKS 402 (488)
Q Consensus 370 ~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~ 402 (488)
+.+...| .....++...|++++|+..|++.++
T Consensus 95 -pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 95 -QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp -STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 3345677 7888889999999999999998764
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.83 E-value=0.0015 Score=62.68 Aligned_cols=172 Identities=8% Similarity=0.013 Sum_probs=129.5
Q ss_pred hcCCH-HHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHH----------HHHHHHHhhhCC---CCCHHHHHHHHHHH
Q 011323 37 RQGRI-SECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKA----------IKEAFRFFKLVP---NPTLSTFNMLMSVC 102 (488)
Q Consensus 37 ~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~~---~~~~~~~~~l~~~~ 102 (488)
+.|++ ++|++.++.+++.+ |.+.........+....|+ ++++++.++.+. +.+..+|+.-..++
T Consensus 40 ~~~~~~eeal~~~~~~l~~n--P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l 117 (567)
T 1dce_A 40 QAGELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLL 117 (567)
T ss_dssp HTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 45544 67899999999987 6776666656666666666 888888888765 45777888877888
Q ss_pred HhcC--ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-CHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc----
Q 011323 103 ASSK--DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG-KVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKA---- 175 (488)
Q Consensus 103 ~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---- 175 (488)
.+.+ +++++++.++.+.+.. +.+..+|+.-..++.+.| ..+++++.++++++.. +-|...|+.....+.+.
T Consensus 118 ~~l~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~ 195 (567)
T 1dce_A 118 SRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQP 195 (567)
T ss_dssp HTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCC
T ss_pred HHcccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhcccc
Confidence 8888 6699999999998876 567888888888888888 8888999988888764 44778888777766653
Q ss_pred ----------CCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCH
Q 011323 176 ----------GQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAV 213 (488)
Q Consensus 176 ----------~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 213 (488)
+.++++++.+++..... +-+...|..+-..+.+.+..
T Consensus 196 ~~~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~ 242 (567)
T 1dce_A 196 DSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPH 242 (567)
T ss_dssp CSSSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCC
T ss_pred cccccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCc
Confidence 45688888888887664 44677777777766666653
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.79 E-value=0.0012 Score=49.94 Aligned_cols=17 Identities=6% Similarity=-0.035 Sum_probs=7.0
Q ss_pred cCCHHHHHHHHHHHHHc
Q 011323 422 KDDVEVGLMLLSQAKED 438 (488)
Q Consensus 422 ~g~~~~a~~~~~~~~~~ 438 (488)
.+++++|.++|++..+.
T Consensus 110 ~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 110 VKNEKQAVKTFEKACRL 126 (138)
T ss_dssp CCCHHHHHHHHHHHHHT
T ss_pred CcCHHHHHHHHHHHHHC
Confidence 33444444444444333
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.79 E-value=0.0035 Score=60.16 Aligned_cols=173 Identities=6% Similarity=-0.052 Sum_probs=117.8
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC----------HhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 011323 106 KDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK----------VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKA 175 (488)
Q Consensus 106 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 175 (488)
...++|++.++.+.+.+ +-+..+|+.--.++...|+ ++++++.++.+.+.. +-+..+|+.-.-.+.+.
T Consensus 43 ~~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 43 ELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRL 120 (567)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 34467788888887765 4456667766666666666 788888888887764 34677777777777777
Q ss_pred C--CHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccC-CHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhc-----
Q 011323 176 G--QVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSG-AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA----- 247 (488)
Q Consensus 176 ~--~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----- 247 (488)
+ +++++++.++++.+.. +-+..+|+.-.-.+.+.| .++++++.++++.... ..+..+|+....++.+.
T Consensus 121 ~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~---p~n~saW~~r~~ll~~l~~~~~ 196 (567)
T 1dce_A 121 PEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN---FSNYSSWHYRSCLLPQLHPQPD 196 (567)
T ss_dssp SSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT---CCCHHHHHHHHHHHHHHSCCCC
T ss_pred ccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC---CCCccHHHHHHHHHHhhccccc
Confidence 7 6688888888888765 446777777776777777 7788888877776541 23445565555555442
Q ss_pred ---------CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCh
Q 011323 248 ---------GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDW 285 (488)
Q Consensus 248 ---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 285 (488)
+.++++.+.++.+.... +.+...|......+.+.+..
T Consensus 197 ~~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~ 242 (567)
T 1dce_A 197 SGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPH 242 (567)
T ss_dssp SSSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCC
T ss_pred ccccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCc
Confidence 44677778887777665 55667777776666666653
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.78 E-value=2.3e-05 Score=56.92 Aligned_cols=61 Identities=7% Similarity=0.054 Sum_probs=27.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 011323 341 SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 402 (488)
Q Consensus 341 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 402 (488)
.+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|++.+++..+
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 66 (111)
T 2l6j_A 6 KQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR 66 (111)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 34444444444444444444444444332 22344444444444444444444444444443
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.78 E-value=8.3e-05 Score=69.59 Aligned_cols=99 Identities=11% Similarity=-0.020 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHc-----C--CCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHH-----cCCC-
Q 011323 93 STFNMLMSVCASSKDSEGAFQVLRLVQEA-----G--LKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN-----AGIE- 159 (488)
Q Consensus 93 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~- 159 (488)
.+++.|..+|...|++++|+.++++..+. | .+....+++.|...|...|++++|..++++... .|..
T Consensus 352 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~H 431 (490)
T 3n71_A 352 RLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSH 431 (490)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTS
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 36677777777777777777777665531 2 111245677888888888888888888777654 2321
Q ss_pred CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011323 160 PN-VHTYGALIDGCAKAGQVAKAFGAYGIMRSK 191 (488)
Q Consensus 160 ~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 191 (488)
|+ ..+.+.+-.++...+.+++|..+|..+++.
T Consensus 432 p~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 432 PITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 334556666777778888888888887653
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.78 E-value=0.0013 Score=49.87 Aligned_cols=87 Identities=14% Similarity=0.058 Sum_probs=39.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc-
Q 011323 312 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN----AKNWQKALELYEHMKSIKLKPTVSTMNALITALCD- 386 (488)
Q Consensus 312 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 386 (488)
..|...+.+++|.+.|++..+.| ++..+..+...|.. .+++++|...|++..+.+ +...+..|...|..
T Consensus 33 ~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G 106 (138)
T 1klx_A 33 LVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAG 106 (138)
T ss_dssp HHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHT
T ss_pred HHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC---CHHHHHHHHHHHHCC
Confidence 33333344444444444444433 33444444444444 445555555555544432 33444444444444
Q ss_pred ---CCChhHHHHHHHHHHhCC
Q 011323 387 ---GDQLPKTMEVLSDMKSLG 404 (488)
Q Consensus 387 ---~~~~~~a~~~~~~~~~~~ 404 (488)
.+++++|.+.+++..+.|
T Consensus 107 ~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 107 KGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp SSSCCCHHHHHHHHHHHHHTT
T ss_pred CCCCcCHHHHHHHHHHHHHCC
Confidence 445555555555554443
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.75 E-value=0.00017 Score=67.44 Aligned_cols=126 Identities=8% Similarity=-0.024 Sum_probs=84.9
Q ss_pred HHHhcCCHHHHHHHHHHHHHC-----C--CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCC-CC-CHHHHH
Q 011323 313 FAGHAGKVEAAFEILQEAKNQ-----G--ISVGIISYSSLMGACSNAKNWQKALELYEHMKS-----IKL-KP-TVSTMN 378 (488)
Q Consensus 313 ~~~~~g~~~~a~~~~~~~~~~-----~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~-~~-~~~~~~ 378 (488)
.+...|++++|+.++++..+. | .+....+++.|..+|...|++++|..++++..+ .|. .| ...+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 355678888888888776542 1 112346788888888888888888888877653 121 12 245677
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHh-----CCC-CCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHHHc
Q 011323 379 ALITALCDGDQLPKTMEVLSDMKS-----LGL-CPN-TITYSILLVACERKDDVEVGLMLLSQAKED 438 (488)
Q Consensus 379 ~l~~~~~~~~~~~~a~~~~~~~~~-----~~~-~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 438 (488)
.|...|...|++++|..++++..+ .|- .|+ ..+...+..++...|.+++|...+.++++.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888887642 231 122 334455666677778888888888877653
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00011 Score=56.31 Aligned_cols=97 Identities=9% Similarity=0.067 Sum_probs=57.9
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC----------hhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhc
Q 011323 354 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ----------LPKTMEVLSDMKSLGLCP-NTITYSILLVACERK 422 (488)
Q Consensus 354 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~ 422 (488)
.+++|.+.++...+.. +.+...|..+..++...++ +++|+..|++.++. .| +...|..+..+|...
T Consensus 17 ~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l--dP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 17 LFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--DPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh--CcCcHHHHHHHHHHHHHh
Confidence 3445555555544443 3344444444444444433 34777777776663 34 356666677777655
Q ss_pred -----------CCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHh
Q 011323 423 -----------DDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS 455 (488)
Q Consensus 423 -----------g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 455 (488)
|++++|++.|+++.+ +.|+...|...+...-
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~~~~ 135 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEMTA 135 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHH
T ss_pred cccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHH
Confidence 478888888888887 5677777776666643
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.66 E-value=0.0004 Score=53.13 Aligned_cols=106 Identities=10% Similarity=0.004 Sum_probs=63.2
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 011323 36 IRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVL 115 (488)
Q Consensus 36 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 115 (488)
-+.+.+++|++.++...+.+ |.+...+..++.++...++++.+....+ .+++|+..|
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~--P~~aea~~n~G~~l~~l~~~~~g~~al~---------------------~~~eAi~~l 69 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN--PLDADNLTRWGGVLLELSQFHSISDAKQ---------------------MIQEAITKF 69 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCHHHHHH---------------------HHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHhcccchhhhhHh---------------------HHHHHHHHH
Confidence 35567778888888777776 6666666666666666665542222111 255666666
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcC-----------CHhHHHHHHHHHHHcCCCCCHHHHHH
Q 011323 116 RLVQEAGLKADCKLYTTLITTCAKSG-----------KVDAMFEVFHEMVNAGIEPNVHTYGA 167 (488)
Q Consensus 116 ~~~~~~~~~~~~~~~~~l~~~~~~~~-----------~~~~a~~~~~~~~~~~~~~~~~~~~~ 167 (488)
++..+.. +.+..+|..+..+|...| ++++|++.|++.++. .|+...|..
T Consensus 70 e~AL~ld-P~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~ 129 (158)
T 1zu2_A 70 EEALLID-PKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLK 129 (158)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHH
T ss_pred HHHHHhC-cCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHH
Confidence 6666553 335556666666666553 666666666666665 455444433
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00087 Score=46.17 Aligned_cols=62 Identities=15% Similarity=0.192 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHc
Q 011323 94 TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA 156 (488)
Q Consensus 94 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 156 (488)
.+..+...+...|++++|+..++...+.. +.+...+..+..++...|++++|.+.+++..+.
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 44444445555555555555555554432 233444455555555555555555555554443
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00061 Score=46.98 Aligned_cols=62 Identities=13% Similarity=0.183 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 011323 340 ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 402 (488)
Q Consensus 340 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 402 (488)
..+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...+++..+
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 344444555555555555555555554432 23344455555555555555555555555544
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00037 Score=50.31 Aligned_cols=93 Identities=9% Similarity=-0.045 Sum_probs=58.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC------HHH
Q 011323 303 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT------VST 376 (488)
Q Consensus 303 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~------~~~ 376 (488)
+...+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...+++..+.. +.+ ...
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~ 80 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT-STAEHVAIRSKL 80 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-SSTTSHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCccHHHHHHHH
Confidence 34456666667777777777777777777654 3456677777777777777777777777777653 122 344
Q ss_pred HHHHHHHHHcCCChhHHHHHH
Q 011323 377 MNALITALCDGDQLPKTMEVL 397 (488)
Q Consensus 377 ~~~l~~~~~~~~~~~~a~~~~ 397 (488)
+..+..++...|+.+.|+..+
T Consensus 81 ~~~~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 81 QYRLELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHHHHHHHHHCCCCCSSSS
T ss_pred HHHHHHHHHHHHhHhhhHhHH
Confidence 444555555555555544433
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00079 Score=49.07 Aligned_cols=78 Identities=10% Similarity=0.023 Sum_probs=50.3
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 011323 358 ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (488)
Q Consensus 358 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 437 (488)
|...|++..+.. +.+...+..+...|...|++++|+..+++..+.. +.+...|..+...+...|++++|...|+++.+
T Consensus 4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455566655543 3456666666777777777777777777766532 33456666677777777777777777776665
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00075 Score=49.19 Aligned_cols=79 Identities=18% Similarity=0.083 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011323 110 GAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189 (488)
Q Consensus 110 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 189 (488)
.|++.|+...+.. +.+...+..+...+...|++++|.+.|++..+.. +.+...|..+..+|...|++++|...|++..
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3455555555443 3455566666666666666666666666666553 2345566666666666666666666666655
Q ss_pred h
Q 011323 190 S 190 (488)
Q Consensus 190 ~ 190 (488)
.
T Consensus 81 ~ 81 (115)
T 2kat_A 81 A 81 (115)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.42 E-value=0.009 Score=52.74 Aligned_cols=75 Identities=15% Similarity=0.108 Sum_probs=59.8
Q ss_pred CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHH
Q 011323 124 KADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202 (488)
Q Consensus 124 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 202 (488)
+.+..+|..+...+...|++++|...+++.+..+ |+...|..+...+.-.|++++|.+.|++.... .|...+|..
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~~ 348 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLYW 348 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHHH
Confidence 5577788888777777899999999999988874 77777778888888899999999999888776 566666543
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.39 E-value=0.0011 Score=46.97 Aligned_cols=64 Identities=19% Similarity=0.114 Sum_probs=31.0
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 011323 373 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (488)
Q Consensus 373 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 437 (488)
+...+..+...|...|++++|+..|++..+.. +.+...|..+..++...|++++|.+.+++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34444445555555555555555555544421 22334445555555555555555555554443
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.27 E-value=0.0022 Score=45.28 Aligned_cols=62 Identities=11% Similarity=0.099 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHH
Q 011323 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMV 154 (488)
Q Consensus 92 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 154 (488)
...+..+...+...|++++|+..|+...+.. +.+...|..+..+|...|++++|.+.|++..
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3344444444444444444444444444432 2233344444444444444444444444433
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.20 E-value=0.0057 Score=46.26 Aligned_cols=96 Identities=16% Similarity=0.071 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC---ChhHHHHHHHHHHhCCCCC--CHHHHHHHHHHHhhcCCHHHHH
Q 011323 355 WQKALELYEHMKSIKLKPTVSTMNALITALCDGD---QLPKTMEVLSDMKSLGLCP--NTITYSILLVACERKDDVEVGL 429 (488)
Q Consensus 355 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~ 429 (488)
...+.+-|.+....+ .++..+...+..++++.+ +.++++.++++..+.. .| +...+-.+.-++.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 455566666666655 477888888888888888 5668888888887753 34 3556667778888899999999
Q ss_pred HHHHHHHHcCCCCcHHHHHHHHHHH
Q 011323 430 MLLSQAKEDGVIPNLVMFKCIIGMC 454 (488)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~li~~~ 454 (488)
++++.+.+ +.|+..--..+...+
T Consensus 92 ~y~~~lL~--ieP~n~QA~~Lk~~i 114 (152)
T 1pc2_A 92 KYVRGLLQ--TEPQNNQAKELERLI 114 (152)
T ss_dssp HHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred HHHHHHHh--cCCCCHHHHHHHHHH
Confidence 99988887 557665555555543
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.02 E-value=0.0031 Score=44.23 Aligned_cols=57 Identities=16% Similarity=0.142 Sum_probs=35.5
Q ss_pred HHHHHcCCChhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHhhcCCHHHHHHHHHHHHHc
Q 011323 381 ITALCDGDQLPKTMEVLSDMKSLGLCPNTI-TYSILLVACERKDDVEVGLMLLSQAKED 438 (488)
Q Consensus 381 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 438 (488)
...+.+.|++++|++.+++..+.. +.+.. .+..+..++...|++++|.+.|+++.+.
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 344556666777777776666531 22345 6666666666777777777777766664
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.93 E-value=0.023 Score=57.52 Aligned_cols=47 Identities=15% Similarity=0.140 Sum_probs=25.9
Q ss_pred HHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011323 137 CAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMR 189 (488)
Q Consensus 137 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 189 (488)
....|++++|.++.+.+ .+...|..+...+.+.++++.|.+.|.++.
T Consensus 662 ~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 662 ALKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp HHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred hhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 34556666665554322 245556666666666666666666665543
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.89 E-value=0.018 Score=50.82 Aligned_cols=63 Identities=5% Similarity=-0.158 Sum_probs=27.2
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 011323 338 GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 402 (488)
Q Consensus 338 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 402 (488)
++.++..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.+++...
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr 338 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN 338 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 33444444333333444444444444444432 3333343444444444444444444444443
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.58 E-value=0.018 Score=40.12 Aligned_cols=55 Identities=15% Similarity=0.155 Sum_probs=27.4
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHHcCCHhHHHHHHHHHHHc
Q 011323 101 VCASSKDSEGAFQVLRLVQEAGLKADCK-LYTTLITTCAKSGKVDAMFEVFHEMVNA 156 (488)
Q Consensus 101 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 156 (488)
.+...|++++|+..++...+.. +.+.. .+..+..++...|++++|.+.|++..+.
T Consensus 9 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 9 ELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3444555555555555554432 22334 4555555555555555555555555444
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.58 E-value=0.15 Score=51.60 Aligned_cols=153 Identities=14% Similarity=0.064 Sum_probs=96.8
Q ss_pred HHHhcCChhHHHH-HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 011323 101 VCASSKDSEGAFQ-VLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVA 179 (488)
Q Consensus 101 ~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 179 (488)
.....+++++|.+ ++.. ++ +......++..+.+.|..+.|.++.+.-. .-+......|+++
T Consensus 608 ~~~~~~~~~~a~~~~l~~-----i~-~~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~ 669 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLPN-----VE-GKDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLT 669 (814)
T ss_dssp HHHHTTCHHHHHHHTGGG-----CC-CHHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHH
T ss_pred HHHHhCCHHHHHHHHHhc-----CC-chHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHH
Confidence 3445677887766 4411 11 12233667777888888888876653211 1134456789999
Q ss_pred HHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHH
Q 011323 180 KAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKM 259 (488)
Q Consensus 180 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 259 (488)
.|+++.+.+ .+...|..+...+.+.|+++.|.+.|..+.. +..+...+...|+.+...++-+.
T Consensus 670 ~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d-----------~~~l~~l~~~~~~~~~~~~~~~~ 732 (814)
T 3mkq_A 670 LARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD-----------LESLFLLHSSFNNKEGLVTLAKD 732 (814)
T ss_dssp HHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC-----------HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC-----------hhhhHHHHHHcCCHHHHHHHHHH
Confidence 998885432 3678899999999999999999999988742 34555666667777766666555
Q ss_pred HHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHH
Q 011323 260 IHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD 294 (488)
Q Consensus 260 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 294 (488)
....+. ++....+|.+.|++++|.+++.+
T Consensus 733 a~~~~~------~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 733 AETTGK------FNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp HHHTTC------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHcCc------hHHHHHHHHHcCCHHHHHHHHHH
Confidence 554431 23333445556666666655543
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0086 Score=55.04 Aligned_cols=61 Identities=8% Similarity=-0.089 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C-CCCC-HhHHHHHHHHHHccCCHHHHHHHHHHH
Q 011323 163 HTYGALIDGCAKAGQVAKAFGAYGIMRSK-----N-VKPD-RVVFNALITACGQSGAVDRAFDVLAEM 223 (488)
Q Consensus 163 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~ 223 (488)
.+++.|..+|...|++++|+.++++.... | -.|+ ..+++.|...|...|++++|+.++++.
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~A 408 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKA 408 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 34455555555555555555555544321 1 0111 234455555555555555555555544
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0083 Score=55.14 Aligned_cols=84 Identities=13% Similarity=0.113 Sum_probs=41.4
Q ss_pred cCCHHHHHHHHHHHHHC-----C--CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCC-CC-CHHHHHHHHH
Q 011323 317 AGKVEAAFEILQEAKNQ-----G--ISVGIISYSSLMGACSNAKNWQKALELYEHMKS-----IKL-KP-TVSTMNALIT 382 (488)
Q Consensus 317 ~g~~~~a~~~~~~~~~~-----~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~-~~-~~~~~~~l~~ 382 (488)
.|++++|+.++++..+. | .+....+++.+..+|...|++++|..++++... .|. .| ...+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 35566666666554431 1 011134555666666666666666666655542 110 11 1234555555
Q ss_pred HHHcCCChhHHHHHHHHH
Q 011323 383 ALCDGDQLPKTMEVLSDM 400 (488)
Q Consensus 383 ~~~~~~~~~~a~~~~~~~ 400 (488)
.|...|++++|+.++++.
T Consensus 391 ~~~~qg~~~eA~~~~~~A 408 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKA 408 (433)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHH
Confidence 555555555555555554
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.51 E-value=0.017 Score=53.07 Aligned_cols=26 Identities=8% Similarity=-0.225 Sum_probs=13.1
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHH
Q 011323 411 TYSILLVACERKDDVEVGLMLLSQAK 436 (488)
Q Consensus 411 ~~~~l~~~~~~~g~~~~a~~~~~~~~ 436 (488)
+++.|...|...|++++|+.+++++.
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 34445555555555555555554443
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.49 E-value=0.03 Score=38.62 Aligned_cols=48 Identities=4% Similarity=0.031 Sum_probs=23.6
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHc
Q 011323 108 SEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA 156 (488)
Q Consensus 108 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 156 (488)
.++|..++++..+.. +-++.....+...+.+.|++++|...|+.+.+.
T Consensus 25 ~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 25 TDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 345555555554443 334444444555555555555555555555543
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.41 E-value=0.015 Score=53.60 Aligned_cols=86 Identities=12% Similarity=0.109 Sum_probs=43.4
Q ss_pred HcCCHhHHHHHHHHHHHcC---CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C-CCCC-HhHHHHHH
Q 011323 139 KSGKVDAMFEVFHEMVNAG---IEP----NVHTYGALIDGCAKAGQVAKAFGAYGIMRSK-----N-VKPD-RVVFNALI 204 (488)
Q Consensus 139 ~~~~~~~a~~~~~~~~~~~---~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~-~~~~~~ll 204 (488)
+.|++++|++++++.++.. +.| ...+++.+...|...|++++|+.++++.... | -.|+ ..+++.|.
T Consensus 299 ~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa 378 (429)
T 3qwp_A 299 AHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVG 378 (429)
T ss_dssp HTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHH
Confidence 4455566666665555321 111 1234555566666666666666665554421 1 1111 33455555
Q ss_pred HHHHccCCHHHHHHHHHHHh
Q 011323 205 TACGQSGAVDRAFDVLAEMN 224 (488)
Q Consensus 205 ~~~~~~g~~~~a~~~~~~~~ 224 (488)
..|...|++++|+.++++..
T Consensus 379 ~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 379 KLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHH
Confidence 66666666666666555543
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.39 E-value=0.059 Score=37.10 Aligned_cols=67 Identities=12% Similarity=-0.036 Sum_probs=41.6
Q ss_pred CCCHHHHHHHHHHHHcCCC---hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHc
Q 011323 371 KPTVSTMNALITALCDGDQ---LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 438 (488)
Q Consensus 371 ~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 438 (488)
+.|...+..+..++...++ .++|..++++.+... +-+......+...+...|++++|+..|+++.+.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3455666666666543333 567777777766632 334566666667777777777777777777664
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=96.36 E-value=0.066 Score=38.87 Aligned_cols=96 Identities=15% Similarity=0.032 Sum_probs=62.2
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhH---HHHHHHHHHhCCCCC--CHHHHHHHHHHHhhcCCHHH
Q 011323 353 KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK---TMEVLSDMKSLGLCP--NTITYSILLVACERKDDVEV 427 (488)
Q Consensus 353 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~ 427 (488)
..+..+.+-+......+ .++..+-..+..++++...... ++.+++++.+.+ .| .....-.+.-++.+.|++++
T Consensus 15 ~~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHH
Confidence 34445555555555444 3677777777888888776665 778888877653 23 33445566777888888888
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHH
Q 011323 428 GLMLLSQAKEDGVIPNLVMFKCIIG 452 (488)
Q Consensus 428 a~~~~~~~~~~~~~~~~~~~~~li~ 452 (488)
|.++++.+++ +.|+..-...|-.
T Consensus 93 A~~~~~~lL~--~eP~n~QA~~Lk~ 115 (126)
T 1nzn_A 93 ALKYVRGLLQ--TEPQNNQAKELER 115 (126)
T ss_dssp HHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred HHHHHHHHHH--hCCCCHHHHHHHH
Confidence 8888888887 4455444333333
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.20 E-value=0.042 Score=41.51 Aligned_cols=84 Identities=14% Similarity=0.067 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHcCCChhHHHH
Q 011323 321 EAAFEILQEAKNQGISVGIISYSSLMGACSNAK---NWQKALELYEHMKSIKLKP--TVSTMNALITALCDGDQLPKTME 395 (488)
Q Consensus 321 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~ 395 (488)
..+.+-|.+..+.+ .++..+...+..++++++ +.++++.+++...+.. .| +...+-.+.-+|.+.|++++|.+
T Consensus 15 ~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 15 LKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHH
Confidence 44455555555544 356666666777777766 5557777777776543 23 24455556667777777777777
Q ss_pred HHHHHHhCCCCCC
Q 011323 396 VLSDMKSLGLCPN 408 (488)
Q Consensus 396 ~~~~~~~~~~~p~ 408 (488)
.++.+++ +.|+
T Consensus 93 y~~~lL~--ieP~ 103 (152)
T 1pc2_A 93 YVRGLLQ--TEPQ 103 (152)
T ss_dssp HHHHHHH--HCTT
T ss_pred HHHHHHh--cCCC
Confidence 7777776 3554
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.16 E-value=0.2 Score=42.43 Aligned_cols=81 Identities=15% Similarity=0.037 Sum_probs=41.9
Q ss_pred hHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHcc-CCHH
Q 011323 144 DAMFEVFHEMVNAGIEPN---VHTYGALIDGCAK-----AGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS-GAVD 214 (488)
Q Consensus 144 ~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-g~~~ 214 (488)
..|...+++.++. .|+ ...|..+...|.. -|+.++|.+.|++....+..-+..++......++.. |+.+
T Consensus 180 ~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 180 HAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred HHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 4455555555544 344 3455555555555 356666666666655542111244455555555553 5566
Q ss_pred HHHHHHHHHhhC
Q 011323 215 RAFDVLAEMNAE 226 (488)
Q Consensus 215 ~a~~~~~~~~~~ 226 (488)
++.+.+++....
T Consensus 258 ~a~~~L~kAL~a 269 (301)
T 3u64_A 258 GFDEALDRALAI 269 (301)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHcC
Confidence 666666655554
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=95.83 E-value=0.1 Score=44.24 Aligned_cols=92 Identities=13% Similarity=0.077 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHc-----CCChhHHHHHHHHHHhCCCCC--CHHHHHHHHHHHhhc-C
Q 011323 355 WQKALELYEHMKSIKLKPT---VSTMNALITALCD-----GDQLPKTMEVLSDMKSLGLCP--NTITYSILLVACERK-D 423 (488)
Q Consensus 355 ~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~-g 423 (488)
...|...+++..+.. |+ ...|..+...|.. .|+.++|.+.|++.++. .| +..++..+...+++. |
T Consensus 179 l~~A~a~lerAleLD--P~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L--nP~~~id~~v~YA~~l~~~~g 254 (301)
T 3u64_A 179 VHAAVMMLERACDLW--PSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY--CSAHDPDHHITYADALCIPLN 254 (301)
T ss_dssp HHHHHHHHHHHHHHC--TTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH--CCTTCSHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHHhC--CCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh--CCCCCchHHHHHHHHHHHhcC
Confidence 456666677766653 44 5567777777777 47888888888888773 45 366677777777774 7
Q ss_pred CHHHHHHHHHHHHHcCCC--CcHHHHHHH
Q 011323 424 DVEVGLMLLSQAKEDGVI--PNLVMFKCI 450 (488)
Q Consensus 424 ~~~~a~~~~~~~~~~~~~--~~~~~~~~l 450 (488)
+.+++.+.+++.+..+.. |+....+.+
T Consensus 255 d~~~a~~~L~kAL~a~p~~~P~~~lan~~ 283 (301)
T 3u64_A 255 NRAGFDEALDRALAIDPESVPHNKLLVIL 283 (301)
T ss_dssp CHHHHHHHHHHHHHCCGGGCSSCHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCChhHHHHH
Confidence 888888888888877655 665444433
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.81 E-value=0.052 Score=38.34 Aligned_cols=63 Identities=13% Similarity=0.047 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 011323 340 ISYSSLMGACSNAKNWQKALELYEHMKSIK------LKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 402 (488)
Q Consensus 340 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 402 (488)
..+..+...+.+.|++..|...|+...+.. -.+...++..+..++.+.|++++|+.+++++.+
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 334444444555555555555554443210 012233444444444444444444444444443
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=95.74 E-value=0.36 Score=36.07 Aligned_cols=114 Identities=9% Similarity=-0.024 Sum_probs=78.8
Q ss_pred CCCHHHHHHHHHHHHhcCCh------hHHHHHHHHHHHcCCCCCHH-H---HHHHHH---HHHHcCCHhHHHHHHHHHHH
Q 011323 89 NPTLSTFNMLMSVCASSKDS------EGAFQVLRLVQEAGLKADCK-L---YTTLIT---TCAKSGKVDAMFEVFHEMVN 155 (488)
Q Consensus 89 ~~~~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~~~~~~~~~-~---~~~l~~---~~~~~~~~~~a~~~~~~~~~ 155 (488)
+.|..+|-..+...-+.|++ ++..++|++.... ++|+.. . |-.+-- .+...+++++|.++|+.+.+
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 56788888888888888888 8888899888764 466421 1 111111 11344889999999999877
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHH
Q 011323 156 AGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALIT 205 (488)
Q Consensus 156 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 205 (488)
.+ +-=...|-.....-.+.|++..|.+++......+.. +...+...++
T Consensus 89 ~h-KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k-~~~~le~a~~ 136 (161)
T 4h7y_A 89 NC-KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV-PLEMLEIALR 136 (161)
T ss_dssp HC-TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB-CHHHHHHHHH
T ss_pred Hh-HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC-cHHHHHHHHH
Confidence 52 323677777777888899999999999998887643 3344444443
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.74 E-value=0.087 Score=37.17 Aligned_cols=66 Identities=11% Similarity=0.007 Sum_probs=41.1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC------CCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHc
Q 011323 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAG------LKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA 156 (488)
Q Consensus 91 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 156 (488)
+...+..+...+.+.+++..|...|+...+.- -.+....+..+..++.+.|+++.|...+++..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 34455566667777777777777776665431 1234456666666666777777777777666654
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=95.60 E-value=0.12 Score=38.60 Aligned_cols=105 Identities=13% Similarity=0.048 Sum_probs=65.9
Q ss_pred cHHHHHHHHHHHHhcCCH------HHHHHHHHHHHhCCCCCCHH----HHHHHHH---HHHcCCChhHHHHHHHHHHhCC
Q 011323 338 GIISYSSLMGACSNAKNW------QKALELYEHMKSIKLKPTVS----TMNALIT---ALCDGDQLPKTMEVLSDMKSLG 404 (488)
Q Consensus 338 ~~~~~~~l~~~~~~~g~~------~~a~~~~~~~~~~~~~~~~~----~~~~l~~---~~~~~~~~~~a~~~~~~~~~~~ 404 (488)
|..+|-..+....+.|+. +...++|++.... ++|+.. .|-.+-- .+...++.++|.++|+.++..+
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h 90 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC 90 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 455555555555555555 5666677666542 244321 1111110 1223478899999999887543
Q ss_pred CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcH
Q 011323 405 LCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL 444 (488)
Q Consensus 405 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 444 (488)
-.- ...|.....--.+.|+...|.+++.+.+..+..|..
T Consensus 91 KkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~ 129 (161)
T 4h7y_A 91 KKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLE 129 (161)
T ss_dssp TTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHH
T ss_pred HHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHH
Confidence 223 667777777778899999999999999887766554
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.60 E-value=0.59 Score=36.31 Aligned_cols=45 Identities=16% Similarity=0.186 Sum_probs=21.9
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHH
Q 011323 173 AKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEM 223 (488)
Q Consensus 173 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 223 (488)
...|+++.|.++.+.+ .+...|..|.......|+++-|.+.|...
T Consensus 16 L~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 3445555555544433 13445555555555555555555555443
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=95.22 E-value=0.6 Score=34.10 Aligned_cols=84 Identities=15% Similarity=0.033 Sum_probs=62.0
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHH
Q 011323 352 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLML 431 (488)
Q Consensus 352 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 431 (488)
+|++......+-.+ ..+....+..+..+...|.-|+-.+++..+... -+|++.....+..+|.+.|+..++.++
T Consensus 74 C~NlKrVi~C~~~~-----n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eL 147 (172)
T 1wy6_A 74 CQNLKSVVECGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTL 147 (172)
T ss_dssp CSCTHHHHHHHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hhcHHHHHHHHHHh-----cchHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHH
Confidence 44555444444332 234456667778888889999988888886543 478888888999999999999999999
Q ss_pred HHHHHHcCCC
Q 011323 432 LSQAKEDGVI 441 (488)
Q Consensus 432 ~~~~~~~~~~ 441 (488)
+.++-+.|++
T Consensus 148 l~~AC~kG~k 157 (172)
T 1wy6_A 148 LIEACKKGEK 157 (172)
T ss_dssp HHHHHHTTCH
T ss_pred HHHHHHhhhH
Confidence 9988888764
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=94.90 E-value=0.2 Score=36.37 Aligned_cols=87 Identities=11% Similarity=0.034 Sum_probs=57.7
Q ss_pred CCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHH---HHHHHHHHHhCCCCC--CHHHHHHHHHHHHcCCChhH
Q 011323 318 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK---ALELYEHMKSIKLKP--TVSTMNALITALCDGDQLPK 392 (488)
Q Consensus 318 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~ 392 (488)
.....+.+-+......| .++..+-..+..++++..+... ++.+++.+.+.+ .| .....-.|.-++.+.|++++
T Consensus 15 ~~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHH
Confidence 33445555555555544 3667777777778887776655 778888877654 23 23444456678888888888
Q ss_pred HHHHHHHHHhCCCCCC
Q 011323 393 TMEVLSDMKSLGLCPN 408 (488)
Q Consensus 393 a~~~~~~~~~~~~~p~ 408 (488)
|.+.++.+++. .|+
T Consensus 93 A~~~~~~lL~~--eP~ 106 (126)
T 1nzn_A 93 ALKYVRGLLQT--EPQ 106 (126)
T ss_dssp HHHHHHHHHHH--CTT
T ss_pred HHHHHHHHHHh--CCC
Confidence 88888888873 554
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.75 E-value=1.1 Score=34.78 Aligned_cols=23 Identities=26% Similarity=0.283 Sum_probs=8.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHH
Q 011323 164 TYGALIDGCAKAGQVAKAFGAYG 186 (488)
Q Consensus 164 ~~~~l~~~~~~~~~~~~a~~~~~ 186 (488)
.|..|.......|+++-|.+.|.
T Consensus 36 ~Wk~Lg~~AL~~gn~~lAe~cy~ 58 (177)
T 3mkq_B 36 TWERLIQEALAQGNASLAEMIYQ 58 (177)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHH
Confidence 33333333333333333333333
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=94.35 E-value=1.1 Score=32.79 Aligned_cols=82 Identities=11% Similarity=0.087 Sum_probs=56.6
Q ss_pred CCCHHHHHHHHHHHHcCCCh---hHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHH
Q 011323 371 KPTVSTMNALITALCDGDQL---PKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 447 (488)
Q Consensus 371 ~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 447 (488)
.|+..+-..+..++++..+. .+++.+++++.+.+..-....+-.+.-++.+.|++++|.++.+.+.+ +.|+..-.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~N~QA 114 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNKQV 114 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTTCHHH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCCCHHH
Confidence 57777777777777777654 36778888877654111355566777888888888888888888887 55666655
Q ss_pred HHHHHHH
Q 011323 448 KCIIGMC 454 (488)
Q Consensus 448 ~~li~~~ 454 (488)
..|-...
T Consensus 115 ~~Lk~~I 121 (134)
T 3o48_A 115 GALKSMV 121 (134)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555543
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=94.10 E-value=2.8 Score=44.12 Aligned_cols=87 Identities=9% Similarity=0.079 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHH
Q 011323 127 CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNV----HTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNA 202 (488)
Q Consensus 127 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 202 (488)
..-|..++..+.+.+.++.+.++-...++...+.+. ..|..+++.+...|++++|...+-.+..... -...+..
T Consensus 899 ~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~ 976 (1139)
T 4fhn_B 899 SCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLLD 976 (1139)
T ss_dssp HHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHHH
Confidence 356777888888888888888777766654322121 2577888888888999999888887776533 4566777
Q ss_pred HHHHHHccCCHHH
Q 011323 203 LITACGQSGAVDR 215 (488)
Q Consensus 203 ll~~~~~~g~~~~ 215 (488)
++..++..|..+.
T Consensus 977 LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 977 FVNQLTKQGKINQ 989 (1139)
T ss_dssp HHHHHHHHCCHHH
T ss_pred HHHHHHhCCChhh
Confidence 7777776666544
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.97 E-value=5.5 Score=36.64 Aligned_cols=162 Identities=13% Similarity=0.132 Sum_probs=83.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCcc---HHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCC--HH
Q 011323 307 LSALIDFAGHAGKVEAAFEILQEAKNQ--GISVG---IISYSSLMGACSNAKNWQKALELYEHMKS----IKLKPT--VS 375 (488)
Q Consensus 307 ~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~--~~ 375 (488)
...|...+...|++.+|..++..+... +.... ...+...++.|...+++..|..++.++.. ....|+ ..
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~ 219 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE 219 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence 345666777777777777777776532 11111 34556666777777888888777776531 221222 13
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHhC-CCCCCHHHHH----HHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Q 011323 376 TMNALITALCDGDQLPKTMEVLSDMKSL-GLCPNTITYS----ILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCI 450 (488)
Q Consensus 376 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~p~~~~~~----~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 450 (488)
.+...+..+...+++.+|.+.|.++.+. ....+...+. .++....-.+....-..++.........++...+..+
T Consensus 220 ~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L 299 (445)
T 4b4t_P 220 YYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESL 299 (445)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhcccccccHHHHHH
Confidence 3455566666777777777777766431 0111222111 1111111111111122223333333334566777778
Q ss_pred HHHHhh----cHHHHHHHHHHh
Q 011323 451 IGMCSR----RYEKARTLNEHV 468 (488)
Q Consensus 451 i~~~~~----~~~~a~~~~~~~ 468 (488)
+.++.. +++...+.++..
T Consensus 300 ~k~f~~~~L~~~~~~~~~~~~~ 321 (445)
T 4b4t_P 300 VKLFTTNELMRWPIVQKTYEPV 321 (445)
T ss_dssp HHHHHHCCSSSHHHHHHHTCSS
T ss_pred HHHHHhchHhhhHHHHHHHHHH
Confidence 877754 466655555443
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.49 E-value=0.95 Score=44.47 Aligned_cols=51 Identities=14% Similarity=0.138 Sum_probs=28.0
Q ss_pred HHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHH
Q 011323 384 LCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 435 (488)
Q Consensus 384 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 435 (488)
+...|+++-|+++.++.... .+-+..+|..|...|...|+++.|+-.++.+
T Consensus 347 Ll~K~~~elAL~~Ak~AV~~-aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 347 LLNRGDYELALGVSNTSTEL-ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHTTCHHHHHHHHHHHHHH-CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HhccCcHHHHHHHHHHHHhc-CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 44455666666666655543 1223555666666666666666665555544
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=92.34 E-value=2.4 Score=31.01 Aligned_cols=61 Identities=18% Similarity=0.163 Sum_probs=28.1
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 011323 273 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 334 (488)
Q Consensus 273 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 334 (488)
...++.+...|.-++..+++..+.. +.+|++...-.+..+|.+.|+..++.+++.+.-+.|
T Consensus 95 d~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 95 NKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 3334444444555554454444322 123344444445555555555555555555554444
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=92.23 E-value=0.00078 Score=60.83 Aligned_cols=211 Identities=13% Similarity=0.113 Sum_probs=130.8
Q ss_pred HHHHHHHHHhhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 011323 63 YHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142 (488)
Q Consensus 63 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 142 (488)
....++.+....+.+.+|++-|=+. .|+..|..++.+..+.|.+++-+..+...++.. .++..=+.|+.+|++.++
T Consensus 56 VWs~LgkAqL~~~~v~eAIdsyIkA--~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ayAk~~r 131 (624)
T 3lvg_A 56 VWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNR 131 (624)
T ss_dssp CSSSHHHHTTTSSSCTTTTTSSCCC--SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHHHHTSCS
T ss_pred HHHHHHHHHHccCchHHHHHHHHhC--CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHHHHhhCc
Confidence 3445666666667777777666544 455678888999999999999888887665542 333444578889999888
Q ss_pred HhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--------------------CCCCHhHHHH
Q 011323 143 VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN--------------------VKPDRVVFNA 202 (488)
Q Consensus 143 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------------------~~~~~~~~~~ 202 (488)
..+..+++. .||..-...+..-|...|.++.|.-+|..+.... -.-++.||..
T Consensus 132 L~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKe 204 (624)
T 3lvg_A 132 LAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKE 204 (624)
T ss_dssp SSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHH
T ss_pred HHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHH
Confidence 766443321 3455555566666666666666665555432210 0235677888
Q ss_pred HHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcc
Q 011323 203 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT 282 (488)
Q Consensus 203 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 282 (488)
+-.+|...+++.-|.-.--.+.- .+| -...++..|-+.|.+++.+.+++.-.... .....+|+-|.-.|++-
T Consensus 205 V~~ACvd~~EfrLAqicGLniIv-----had--eL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsKY 276 (624)
T 3lvg_A 205 VCFACVDGKEFRLAQMCGLHIVV-----HAD--ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF 276 (624)
T ss_dssp HTHHHHHSCTTTTTTHHHHHHHC-----CSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHSS
T ss_pred HHHHHhCchHHHHHHHhcchhcc-----cHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhc
Confidence 88888888777665544333332 122 12234555677777777777777766543 45666777777666665
Q ss_pred CChHHHHHHHH
Q 011323 283 GDWEFACSVYD 293 (488)
Q Consensus 283 ~~~~~a~~~~~ 293 (488)
++++..+.++
T Consensus 277 -~PeKlmEHlk 286 (624)
T 3lvg_A 277 -KPQKMREHLE 286 (624)
T ss_dssp -CTTHHHHHHT
T ss_pred -CHHHHHHHHH
Confidence 4444444443
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=91.81 E-value=3.8 Score=36.95 Aligned_cols=58 Identities=12% Similarity=0.012 Sum_probs=29.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHH
Q 011323 342 YSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM 400 (488)
Q Consensus 342 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 400 (488)
...++..+...|+++++...+..+.... +.+...|..+|.++.+.|+..+|++.|+..
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~ 231 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRV 231 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3344444455555555555555544333 334445555555555555555555555543
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=91.79 E-value=1.8 Score=29.68 Aligned_cols=65 Identities=17% Similarity=0.262 Sum_probs=43.1
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 011323 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 454 (488)
Q Consensus 389 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 454 (488)
+.-++.+-++.+....+-|++....+.+++|.+.+++.-|.++++-++.. ..+...+|..++.-+
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lqEl 89 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQEL 89 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHHHH
Confidence 34456666666666667778888888888888888888888888776654 222244566666543
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=91.77 E-value=1 Score=40.75 Aligned_cols=74 Identities=14% Similarity=0.160 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCHhHHHHH
Q 011323 129 LYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRS-----KNVKPDRVVFNAL 203 (488)
Q Consensus 129 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~l 203 (488)
+...++..+...|+.+++...+..+.... +.+...|..+|.++.+.|+..+|++.|+.+.. .|+.|+..+-...
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~ 251 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALN 251 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 44556777778888888888877776653 44777888888888888888888888877653 4788877664433
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.63 E-value=8.1 Score=35.53 Aligned_cols=97 Identities=16% Similarity=0.170 Sum_probs=56.7
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCC---cchHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCCCCH----HH
Q 011323 201 NALITACGQSGAVDRAFDVLAEMNAEVHPVDPD---HITIGALMKACANAGQVDRAREVYKMIHKY--NIKGTP----EV 271 (488)
Q Consensus 201 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~----~~ 271 (488)
..|...+...|++.+|..++.++.....+.... ...+..-++.|...+++..|..++.++... ...+++ ..
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 445666777777777777777765432222211 224455566777777887777777765321 112222 23
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHh
Q 011323 272 YTIAINCCSQTGDWEFACSVYDDMTK 297 (488)
Q Consensus 272 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 297 (488)
+...+..+...+++.+|.+.|.++..
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 45556666677777777766666543
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.47 E-value=1.3 Score=43.43 Aligned_cols=52 Identities=19% Similarity=0.210 Sum_probs=30.7
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011323 313 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 365 (488)
Q Consensus 313 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 365 (488)
.+...|+++.|+++-++..... +.+-.+|..|..+|...|+++.|+-.++.+
T Consensus 346 FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 346 FLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 3445566666666666665542 334556666666666666666666655554
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=91.03 E-value=7.3 Score=33.88 Aligned_cols=187 Identities=12% Similarity=0.059 Sum_probs=106.4
Q ss_pred hhHHHHHHHHhcCCH---HHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHH
Q 011323 27 EQLHSYNRLIRQGRI---SECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCA 103 (488)
Q Consensus 27 ~~~~~~~~l~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~ 103 (488)
..+.-...-+..|++ =+|.+.+..+..+ +.+++++++|++++-.. ...+.
T Consensus 14 ~~i~rl~~~I~~G~y~~~YEAHQ~~RTi~~R----------------y~~~k~y~eAidLL~~G-----------A~~ll 66 (336)
T 3lpz_A 14 RIIARLQRRIAEGQPEEQYEAAQETRLVAAR----------------YSKQGNWAAAVDILASV-----------SQTLL 66 (336)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH----------------HHHTTCHHHHHHHHHHH-----------HHHHH
T ss_pred HHHHHHHHHHhCCCCccccHHHHHHHHHHHH----------------HHhhcCHHHHHHHHHHH-----------HHHHH
Confidence 344455556688888 7888877755432 44567788888775432 22344
Q ss_pred hcCChhHHHHHH----HHHHHcCCCCCHHHHHHHHHHHHHcCCHh-HHHHHHHHHH----HcC--CCCCHHHHHHHHHHH
Q 011323 104 SSKDSEGAFQVL----RLVQEAGLKADCKLYTTLITTCAKSGKVD-AMFEVFHEMV----NAG--IEPNVHTYGALIDGC 172 (488)
Q Consensus 104 ~~~~~~~a~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~----~~~--~~~~~~~~~~l~~~~ 172 (488)
+.|+...|-++- +...+.++++|......++..+.....-+ .=.++.+.++ +.| ..-|......+...|
T Consensus 67 ~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~ 146 (336)
T 3lpz_A 67 RSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLY 146 (336)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHH
T ss_pred HCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHH
Confidence 455555544443 55556777888877777777776654321 1122333332 223 234667777888888
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCCHHH
Q 011323 173 AKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR 252 (488)
Q Consensus 173 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 252 (488)
.+.+++.+|...|- . |-.++...+..++--+...+... .+|.+.-..++ -|.-.++...
T Consensus 147 ~~e~~~~~Ae~H~i--l--g~~~s~~~~a~mL~ew~~~~~~~----------------e~dlfiaRaVL-~yL~l~n~~~ 205 (336)
T 3lpz_A 147 VEEGEFEAAEKHLV--L--GTKESPEVLARMEYEWYKQDESH----------------TAPLYCARAVL-PYLLVANVRA 205 (336)
T ss_dssp HHTTCHHHHHHHHT--T--SCTTHHHHHHHHHHHHHHTSCGG----------------GHHHHHHHHHH-HHHHTTCHHH
T ss_pred HccCCHHHHHHHHH--h--cCCchHHHHHHHHHHHHHhcCCc----------------cHHHHHHHHHH-HHHHhCCHHH
Confidence 88888888877762 2 32344456655554443333211 12222333333 3455678888
Q ss_pred HHHHHHHHH
Q 011323 253 AREVYKMIH 261 (488)
Q Consensus 253 a~~~~~~~~ 261 (488)
|..+++...
T Consensus 206 A~~~~~~f~ 214 (336)
T 3lpz_A 206 ANTAYRIFT 214 (336)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 877665544
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=90.91 E-value=3.8 Score=30.35 Aligned_cols=81 Identities=11% Similarity=0.088 Sum_probs=50.2
Q ss_pred CCCHHHHHHHHHHHHcCCChh---HHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHH
Q 011323 371 KPTVSTMNALITALCDGDQLP---KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 447 (488)
Q Consensus 371 ~~~~~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 447 (488)
.|+..+-..+..++++....+ +++.+++++.+.+..-.....-.+.-++.+.|++++|.++.+.+.+ +.|+..-.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~--~eP~n~QA 113 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNKQV 113 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--TCCCCHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCCcHHH
Confidence 466666666777777666543 5677777776532111334455566777788888888888887777 45655444
Q ss_pred HHHHHH
Q 011323 448 KCIIGM 453 (488)
Q Consensus 448 ~~li~~ 453 (488)
..|-..
T Consensus 114 ~~Lk~~ 119 (144)
T 1y8m_A 114 GALKSM 119 (144)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444333
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=90.84 E-value=2.8 Score=28.74 Aligned_cols=48 Identities=13% Similarity=0.126 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 011323 355 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 402 (488)
Q Consensus 355 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 402 (488)
.-+..+-++.+....+.|++.+..+.+++|-+.+++.-|+++++-++.
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~ 73 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 73 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 344555555555556666666666666666666666666666666553
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=90.52 E-value=11 Score=39.74 Aligned_cols=55 Identities=11% Similarity=0.046 Sum_probs=36.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHh
Q 011323 165 YGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMN 224 (488)
Q Consensus 165 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 224 (488)
...++..+...+..+-+.++..-. +.+...--.+..++...|++++|.+.|.+..
T Consensus 815 ~~~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa 869 (1139)
T 4fhn_B 815 VTELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTS 869 (1139)
T ss_dssp HHHHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 334666677777777776644322 2244444556677888899999999887754
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=90.15 E-value=4.2 Score=29.67 Aligned_cols=73 Identities=7% Similarity=-0.032 Sum_probs=47.9
Q ss_pred CCCccHHHHHHHHHHHHhcCCH---HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC
Q 011323 334 GISVGIISYSSLMGACSNAKNW---QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 408 (488)
Q Consensus 334 ~~~~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~ 408 (488)
+..|++.+-..+..+++++.+. .+++.+++.+.+.+..-....+-.+.-++.+.|++++|.+..+.+++. .|+
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~--eP~ 110 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERN 110 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CTT
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh--CCC
Confidence 3456666666666677766653 456777777765442123455556677788888888888888888763 554
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=89.37 E-value=20 Score=36.31 Aligned_cols=156 Identities=9% Similarity=0.052 Sum_probs=80.7
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHH--HHHHHHHHhcCCH
Q 011323 243 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFL--SALIDFAGHAGKV 320 (488)
Q Consensus 243 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~ 320 (488)
.+.-.|+.+....++..+.+.. ..+..-...+.-++.-.|+.+.+..+++.+... ..|....- .++.-+|+..|+.
T Consensus 499 i~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~-~dp~vRygaa~alglAyaGTGn~ 576 (963)
T 4ady_A 499 CMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGRQELADDLITKMLAS-DESLLRYGGAFTIALAYAGTGNN 576 (963)
T ss_dssp HHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTSCCH
T ss_pred hhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCCCCH
Confidence 3445566666667766665432 111122222333344667777777777776653 11111111 1233356677777
Q ss_pred HHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCh-hHHHHHHHH
Q 011323 321 EAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL-PKTMEVLSD 399 (488)
Q Consensus 321 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~ 399 (488)
.....++..+.... ..+..-...+.-++...|+.+.+.++++.+.+.+ .|....-..+.-+....|.. .+++.++..
T Consensus 577 ~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~ 654 (963)
T 4ady_A 577 SAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDP 654 (963)
T ss_dssp HHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHH
T ss_pred HHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHH
Confidence 66666777776542 2233333333334444566555666666555433 34444444444455555544 467777777
Q ss_pred HHh
Q 011323 400 MKS 402 (488)
Q Consensus 400 ~~~ 402 (488)
+..
T Consensus 655 L~~ 657 (963)
T 4ady_A 655 LTK 657 (963)
T ss_dssp HHT
T ss_pred Hcc
Confidence 763
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=89.14 E-value=4.8 Score=29.34 Aligned_cols=63 Identities=17% Similarity=0.272 Sum_probs=43.8
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 011323 391 PKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 454 (488)
Q Consensus 391 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 454 (488)
-+..+-++.+....+-|++......+++|.+.+|+.-|.++++-++.+ ..+...+|..++.-+
T Consensus 70 wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lqEl 132 (152)
T 2y69_E 70 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQEL 132 (152)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHHHH
Confidence 355556666666667788888888888888888888888888777654 223345677776653
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=89.13 E-value=5 Score=29.22 Aligned_cols=62 Identities=13% Similarity=0.176 Sum_probs=41.6
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 011323 354 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 416 (488)
Q Consensus 354 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 416 (488)
|.-+..+-++.+...++.|++.+..+.+++|-+.+++.-|+++|+-.+.. ..+...+|..++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~l 129 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI 129 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHH
Confidence 34455666666666777778888888888888888888888888777643 233344555554
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=88.87 E-value=11 Score=32.57 Aligned_cols=189 Identities=11% Similarity=0.062 Sum_probs=108.8
Q ss_pred CchhHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHh
Q 011323 25 VSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCAS 104 (488)
Q Consensus 25 ~~~~~~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~ 104 (488)
+...+.....-+..|++=+|.+.+..+..+ +.+++++++|++++... ...+.+
T Consensus 13 ~~r~l~rl~~~I~~G~yYEAhQ~~Rtl~~R----------------y~~~~~~~eAidlL~~g-----------a~~ll~ 65 (312)
T 2wpv_A 13 LAKTLQRFENKIKAGDYYEAHQTLRTIANR----------------YVRSKSYEHAIELISQG-----------ALSFLK 65 (312)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----------------HHHTTCHHHHHHHHHHH-----------HHHHHH
T ss_pred HHHHHHHHHHHhhccChHHHHHHHHHHHHH----------------HHHhcCHHHHHHHHHHH-----------HHHHHH
Confidence 344555666667888888888887765543 34456677777775542 223445
Q ss_pred cCChhHHHHH----HHHHHHcCCCCCHHHHHHHHHHHHHcCCHh-HHHHHHHHH----HHcC--CCCCHHHHHHHHHHHH
Q 011323 105 SKDSEGAFQV----LRLVQEAGLKADCKLYTTLITTCAKSGKVD-AMFEVFHEM----VNAG--IEPNVHTYGALIDGCA 173 (488)
Q Consensus 105 ~~~~~~a~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~----~~~~--~~~~~~~~~~l~~~~~ 173 (488)
.|+...|-++ .+...+.+++++......++..+.....-+ .-.++++.+ .+.| ..-++..+..+...|.
T Consensus 66 ~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~ 145 (312)
T 2wpv_A 66 AKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLL 145 (312)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHh
Confidence 5665555443 455556678888888887887776643211 122333333 3333 1236777888888889
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHcc---CCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCCH
Q 011323 174 KAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS---GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 250 (488)
Q Consensus 174 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 250 (488)
+.+++.+|...|- .|-.-|...+..++--+... |...++- .+.-..++ .|.-.++.
T Consensus 146 ~e~~~~~A~~H~i----~~~~~s~~~~a~~l~~w~~~~~~~~~~e~d----------------lf~~RaVL-~yL~l~n~ 204 (312)
T 2wpv_A 146 EGDFVYEAERYFM----LGTHDSMIKYVDLLWDWLCQVDDIEDSTVA----------------EFFSRLVF-NYLFISNI 204 (312)
T ss_dssp HTTCHHHHHHHHH----TSCHHHHHHHHHHHHHHHHHTTCCCHHHHH----------------HHHHHHHH-HHHHTTBH
T ss_pred hcCCHHHHHHHHH----hCCCccHHHHHHHHHHHHHhcCCCCcchHH----------------HHHHHHHH-HHHHhcCH
Confidence 9999988887664 12111345555555444433 4333321 11222222 34456788
Q ss_pred HHHHHHHHHHH
Q 011323 251 DRAREVYKMIH 261 (488)
Q Consensus 251 ~~a~~~~~~~~ 261 (488)
..|..+++...
T Consensus 205 ~~A~~~~~~f~ 215 (312)
T 2wpv_A 205 SFAHESKDIFL 215 (312)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88888877554
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=88.22 E-value=4.6 Score=27.53 Aligned_cols=86 Identities=17% Similarity=0.097 Sum_probs=59.4
Q ss_pred CCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 011323 39 GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLV 118 (488)
Q Consensus 39 g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 118 (488)
-..++|..+-+.+...+ . ......+-......+|++++|..+.+....||...|.++... +.|--+++..-+..+
T Consensus 20 H~HqEA~tIAdwL~~~~--~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~l 94 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLG--Q-DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCEW--HLGLGAALDRRLAGL 94 (115)
T ss_dssp TCHHHHHHHHHHHHHTT--C-HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHHH--HTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCC--c-HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHH
Confidence 36788888888887765 2 444444444455667889999999888888888888776543 567777777777677
Q ss_pred HHcCCCCCHHHH
Q 011323 119 QEAGLKADCKLY 130 (488)
Q Consensus 119 ~~~~~~~~~~~~ 130 (488)
...| .|....|
T Consensus 95 a~sg-~p~~q~F 105 (115)
T 2uwj_G 95 GGSS-DPALADF 105 (115)
T ss_dssp HTCS-SHHHHHH
T ss_pred HhCC-CHHHHHH
Confidence 7665 4444444
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=87.01 E-value=0.00028 Score=63.60 Aligned_cols=116 Identities=13% Similarity=0.108 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 011323 93 STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGC 172 (488)
Q Consensus 93 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 172 (488)
..|..+..+....++..+|++.|-+ ..|+..|..++....+.|.+++-.+.+....+. ..++..=+.|+-+|
T Consensus 55 ~VWs~LgkAqL~~~~v~eAIdsyIk------A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ay 126 (624)
T 3lvg_A 55 AVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFAL 126 (624)
T ss_dssp CCSSSHHHHTTTSSSCTTTTTSSCC------CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHHHH
T ss_pred cHHHHHHHHHHccCchHHHHHHHHh------CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHHHH
Confidence 4566777777777777777665421 235566777788777778887777777655544 22444445777778
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHH
Q 011323 173 AKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEM 223 (488)
Q Consensus 173 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 223 (488)
++.++..+..+.+. .|+..-...+..-|...|.++.|.-+|..+
T Consensus 127 Ak~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~i 170 (624)
T 3lvg_A 127 AKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV 170 (624)
T ss_dssp HTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGS
T ss_pred HhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhC
Confidence 87777655433321 356666667777777777777776666554
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=85.71 E-value=1.3 Score=36.97 Aligned_cols=55 Identities=11% Similarity=0.213 Sum_probs=47.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCC
Q 011323 32 YNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP 88 (488)
Q Consensus 32 ~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 88 (488)
+..+++.|++++|++....-++.. |.+......+.++++-.|+++.|.+-++...
T Consensus 4 ~~~ll~~g~L~~al~~~~~~VR~~--P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a 58 (273)
T 1zbp_A 4 WKNALSEGQLQQALELLIEAIKAS--PKDASLRSSFIELLCIDGDFERADEQLMQSI 58 (273)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHTC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 567889999999999999999887 8888888889999888899999988877653
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=84.74 E-value=10 Score=28.10 Aligned_cols=71 Identities=6% Similarity=-0.052 Sum_probs=47.7
Q ss_pred CccHHHHHHHHHHHHhcCCH---HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC
Q 011323 336 SVGIISYSSLMGACSNAKNW---QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 408 (488)
Q Consensus 336 ~~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~ 408 (488)
.|+..+-..+..++.++.+. .+++.+++.+.+.+........-.+.-++.+.|++++|.+..+.+++. .|+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~--eP~ 109 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERN 109 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT--CCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCC
Confidence 56666666677777776653 467777777766432223344455667888888888888888888873 564
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=84.62 E-value=7.6 Score=26.54 Aligned_cols=50 Identities=10% Similarity=0.143 Sum_probs=23.7
Q ss_pred HHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 011323 137 CAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN 192 (488)
Q Consensus 137 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 192 (488)
+...|++++|..+.+.+. .||...|.+|.. .+.|..+++...+..+...|
T Consensus 50 LmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~~la~sg 99 (116)
T 2p58_C 50 LMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALESRLNRLARSQ 99 (116)
T ss_dssp HHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTCC
T ss_pred HHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC
Confidence 344555555555444332 455555544433 24455555555554444444
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=84.61 E-value=7.6 Score=26.54 Aligned_cols=86 Identities=10% Similarity=0.041 Sum_probs=55.3
Q ss_pred CCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 011323 39 GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLV 118 (488)
Q Consensus 39 g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 118 (488)
-..++|..+-+.+...+ . ......+-......+|++++|..+.+....||...|.++... +.|--+++..-+..+
T Consensus 21 H~HqEA~tIAdwL~~~~--~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~l 95 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKG--E-EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRL 95 (116)
T ss_dssp TCHHHHHHHHHHHHHTT--C-HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCC--c-HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHH
Confidence 36678888888777765 2 333333444445567888888888888888888887766554 446666666666666
Q ss_pred HHcCCCCCHHHH
Q 011323 119 QEAGLKADCKLY 130 (488)
Q Consensus 119 ~~~~~~~~~~~~ 130 (488)
...| .|....|
T Consensus 96 a~sg-~p~~q~F 106 (116)
T 2p58_C 96 ARSQ-DPRIQTF 106 (116)
T ss_dssp TTCC-CHHHHHH
T ss_pred HhCC-CHHHHHH
Confidence 6555 4444333
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=84.11 E-value=7.1 Score=26.63 Aligned_cols=51 Identities=16% Similarity=0.109 Sum_probs=24.3
Q ss_pred HHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 011323 136 TCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKN 192 (488)
Q Consensus 136 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 192 (488)
.+...|++++|..+.+.+. .||...|.+|.. .+.|..+++...+..+...|
T Consensus 48 SLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~~la~sg 98 (115)
T 2uwj_G 48 SLANQGRYQEALAFAHGNP----WPALEPWFALCE--WHLGLGAALDRRLAGLGGSS 98 (115)
T ss_dssp HHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCS
T ss_pred HHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC
Confidence 3344555555554443332 455555544433 34455555555554554444
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=82.92 E-value=8.2 Score=29.48 Aligned_cols=120 Identities=7% Similarity=-0.015 Sum_probs=60.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcC-CCCC-------HHHHHHHHHHHHHcCCHhHHHHHHHHHHHcC--CCCCHH
Q 011323 94 TFNMLMSVCASSKDSEGAFQVLRLVQEAG-LKAD-------CKLYTTLITTCAKSGKVDAMFEVFHEMVNAG--IEPNVH 163 (488)
Q Consensus 94 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~ 163 (488)
++..-++.+...+.++.|+-+.+.+.... ..|+ ..++..+.+++...|++.+|...|++.++.. +..+..
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s 101 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK 101 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 34444556667777777777766644221 1222 1245566677777888888888887754321 111111
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhC
Q 011323 164 TYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE 226 (488)
Q Consensus 164 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 226 (488)
++..+. ....... ......+...-..+..+|.+.+++++|+.+++.+...
T Consensus 102 ~~~~~~----~~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k 151 (167)
T 3ffl_A 102 VRPSTG----NSASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR 151 (167)
T ss_dssp ----------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred cccccc----ccCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch
Confidence 111110 0000000 0111233444455777778888888888888776543
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=82.11 E-value=30 Score=31.55 Aligned_cols=97 Identities=12% Similarity=-0.038 Sum_probs=52.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHccCChHHHHHHHHHHHh---CCCCCCHHHH--H
Q 011323 236 TIGALMKACANAGQVDRAREVYKMIHKYNIKG--TPEVYTIAINCCSQTGDWEFACSVYDDMTK---KGVIPDEVFL--S 308 (488)
Q Consensus 236 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~--~ 308 (488)
+...+...|.+.|+++.|.+.+..+......+ -...+-.++..+...+++..+...+.+... .+..|+.... .
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 44556666667777777777776665542221 234555666666667777777766666543 2222222110 0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 011323 309 ALIDFAGHAGKVEAAFEILQEAKN 332 (488)
Q Consensus 309 ~l~~~~~~~g~~~~a~~~~~~~~~ 332 (488)
.-...+...+++..|...|-+...
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhc
Confidence 111123345777777777666543
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=81.87 E-value=38 Score=32.60 Aligned_cols=80 Identities=19% Similarity=0.137 Sum_probs=46.8
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 011323 62 VYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141 (488)
Q Consensus 62 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 141 (488)
.+.........+.+++...+.++.. ++.+...-.....+....|+..+|......+-..| ...+..+..++..+.+.|
T Consensus 73 ~Lr~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g 150 (618)
T 1qsa_A 73 TLQSRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASG 150 (618)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCC
Confidence 3333344444446677777776666 44555555556666777777777766666665554 334455556666666555
Q ss_pred CH
Q 011323 142 KV 143 (488)
Q Consensus 142 ~~ 143 (488)
.+
T Consensus 151 ~l 152 (618)
T 1qsa_A 151 KQ 152 (618)
T ss_dssp CS
T ss_pred CC
Confidence 43
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=81.52 E-value=5.9 Score=30.26 Aligned_cols=25 Identities=4% Similarity=0.028 Sum_probs=19.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Q 011323 29 LHSYNRLIRQGRISECIDLLEDMER 53 (488)
Q Consensus 29 ~~~~~~l~~~g~~~~A~~~~~~~~~ 53 (488)
+...+.+..+|+|..|...|.+.++
T Consensus 67 ~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 67 VYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHH
Confidence 4445667799999999999999754
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 488 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.95 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.93 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.66 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.63 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.27 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.25 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.24 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.24 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.22 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.22 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.12 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.1 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.06 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.03 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.81 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.72 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.65 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.61 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.57 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.55 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.54 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.51 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.48 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.46 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.42 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.41 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.32 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.3 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.29 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.29 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.21 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.11 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.1 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.1 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.08 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.07 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.02 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.02 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.96 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.93 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.91 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.9 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.88 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.87 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.87 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.82 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.81 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.79 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.66 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.61 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.06 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.02 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.64 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.62 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.11 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.05 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 95.53 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 95.16 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 94.61 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 94.6 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 93.23 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 91.75 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 90.31 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 87.44 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=5.7e-23 Score=188.06 Aligned_cols=378 Identities=13% Similarity=0.065 Sum_probs=267.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHhcCCh
Q 011323 32 YNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDS 108 (488)
Q Consensus 32 ~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~ 108 (488)
.+.+.+.|++++|++.|+++.+.. |.+...+..++.++...|++++|+..|+++. +.+..+|..+...+...|++
T Consensus 6 a~~~~~~G~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~ 83 (388)
T d1w3ba_ 6 AHREYQAGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhccc
Confidence 455678899999999999998876 6777777778888888888888888887654 44567777888888888888
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011323 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIM 188 (488)
Q Consensus 109 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 188 (488)
++|++.+....+.. +.+..............+....+........... .................+....+...+...
T Consensus 84 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (388)
T d1w3ba_ 84 QEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred cccccccccccccc-cccccccccccccccccccccccccccccccccc-cccccccccccccccccchhhhhHHHHHHh
Confidence 88888888877664 4455555555556666666666666665555443 334445555556666677777777777776
Q ss_pred HhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCC-CcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 011323 189 RSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDP-DHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 267 (488)
Q Consensus 189 ~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 267 (488)
.... +.+...+..+...+...|++++|...+++.... .| +...+..+...+...|++++|...++...... +.
T Consensus 162 ~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~ 235 (388)
T d1w3ba_ 162 IETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL----DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PN 235 (388)
T ss_dssp HHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TT
T ss_pred hccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHh----CcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hh
Confidence 6553 334566677777777788888888888776653 23 23456667777777888888888887777665 45
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHH
Q 011323 268 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 347 (488)
Q Consensus 268 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 347 (488)
+...+..+...+.+.|++++|...|++..+..+. +..++..+...+...|++++|.+.++...... +.+...+..+..
T Consensus 236 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 313 (388)
T d1w3ba_ 236 HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLAN 313 (388)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHH
Confidence 5667777777777788888888888777765443 56667777777777788888887777776653 456677777777
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhhcCC
Q 011323 348 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN-TITYSILLVACERKDD 424 (488)
Q Consensus 348 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 424 (488)
.+...|++++|...|++..+.. +.+..++..+..+|.+.|++++|+..|++.++. .|+ ...|..+...+.+.||
T Consensus 314 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 314 IKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCC
Confidence 7777788888888777776654 345666777777777777888888777777763 443 5667777777766664
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=1.4e-21 Score=178.60 Aligned_cols=375 Identities=12% Similarity=0.064 Sum_probs=303.9
Q ss_pred HHHHHhhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 011323 67 FFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143 (488)
Q Consensus 67 l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 143 (488)
++..+.+.|++++|++.|+++. +.+..++..+..++.+.|++++|++.++...+.. |.+..++..+..++.+.|++
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~~ 83 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhccc
Confidence 3445566799999999998764 4567888999999999999999999999998875 55778999999999999999
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHH
Q 011323 144 DAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEM 223 (488)
Q Consensus 144 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 223 (488)
++|.+.+....+.. +.+..............+....+........... .................+....+...+...
T Consensus 84 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (388)
T d1w3ba_ 84 QEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred cccccccccccccc-cccccccccccccccccccccccccccccccccc-cccccccccccccccccchhhhhHHHHHHh
Confidence 99999999998874 3455556666666666666666666666555443 334455556666777788888888888877
Q ss_pred hhCCCCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCC
Q 011323 224 NAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 303 (488)
Q Consensus 224 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 303 (488)
.... +.+...+..+...+...|+++.|...++...... +.+...+..+...+...|++++|...+.+....+.. +
T Consensus 162 ~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~ 236 (388)
T d1w3ba_ 162 IETQ---PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-H 236 (388)
T ss_dssp HHHC---TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-C
T ss_pred hccC---cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhh-H
Confidence 6541 2234567777888899999999999999988875 567888999999999999999999999998886554 6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 011323 304 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA 383 (488)
Q Consensus 304 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 383 (488)
...+..+...+.+.|++++|...|++..+.. +.++.++..+...+...|++++|...++...... +.+...+..+...
T Consensus 237 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 314 (388)
T d1w3ba_ 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANI 314 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHHH
Confidence 7788888999999999999999999998875 4467889999999999999999999999987765 6778889999999
Q ss_pred HHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCc-HHHHHHHHHHH
Q 011323 384 LCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN-LVMFKCIIGMC 454 (488)
Q Consensus 384 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~ 454 (488)
+...|++++|++.+++..+.. +-+..++..+...+...|++++|...|+++.+ +.|+ ...|..+..++
T Consensus 315 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~lg~~~ 383 (388)
T d1w3ba_ 315 KREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGNTL 383 (388)
T ss_dssp HHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTCHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHH
Confidence 999999999999999998742 33577889999999999999999999999887 4555 34555555554
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.66 E-value=5e-14 Score=124.56 Aligned_cols=271 Identities=12% Similarity=-0.002 Sum_probs=154.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 011323 97 MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAG 176 (488)
Q Consensus 97 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 176 (488)
.....+.+.|++++|+..|+.+.+.. |.+..+|..+..++...|++++|...|++..+.. +-+...+..+...|...|
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~ 101 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNES 101 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccccc
Confidence 34556778889999999998888764 4567788888888889999999999998888764 335778888888888899
Q ss_pred CHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCCHHHHHHH
Q 011323 177 QVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREV 256 (488)
Q Consensus 177 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 256 (488)
++++|.+.+++..... |+.............. .+.......+..+...+.+.++...
T Consensus 102 ~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~a~~~ 158 (323)
T d1fcha_ 102 LQRQACEILRDWLRYT--PAYAHLVTPAEEGAGG---------------------AGLGPSKRILGSLLSDSLFLEVKEL 158 (323)
T ss_dssp CHHHHHHHHHHHHHTS--TTTGGGCC------------------------------------CTTHHHHHHHHHHHHHHH
T ss_pred cccccccchhhHHHhc--cchHHHHHhhhhhhhh---------------------cccccchhhHHHHHHhhHHHHHHHH
Confidence 9999998888887652 3221110000000000 0000000011122233344455555
Q ss_pred HHHHHhcCC-CCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 011323 257 YKMIHKYNI-KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 335 (488)
Q Consensus 257 ~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 335 (488)
+........ ..++.++..+...+...|++++|...+++.....+. +...+..+..++...|++++|.+.+++..+..
T Consensus 159 ~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~- 236 (323)
T d1fcha_ 159 FLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYRRALELQ- 236 (323)
T ss_dssp HHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccc-cccchhhhhhcccccccchhHHHHHHHHHHHh-
Confidence 554443321 223445555555566666666666666655554332 44555555566666666666666666655543
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----------CCCCCHHHHHHHHHHHHcCCChhHHH
Q 011323 336 SVGIISYSSLMGACSNAKNWQKALELYEHMKSI----------KLKPTVSTMNALITALCDGDQLPKTM 394 (488)
Q Consensus 336 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----------~~~~~~~~~~~l~~~~~~~~~~~~a~ 394 (488)
+-+..++..+..+|.+.|++++|...|++.++. ........|..+-.++...|+.+.+.
T Consensus 237 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~ 305 (323)
T d1fcha_ 237 PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG 305 (323)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred hccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 224555556666666666666666666555431 11223344555555555555555443
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.63 E-value=2.6e-13 Score=119.84 Aligned_cols=229 Identities=12% Similarity=0.046 Sum_probs=149.1
Q ss_pred CchhHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCC---CCCHHHHHHHHHH
Q 011323 25 VSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSV 101 (488)
Q Consensus 25 ~~~~~~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~ 101 (488)
....+.-...+++.|++++|++.|+.+++.+ |.+...+..++.++...|++++|...|+++. +.+...|..+...
T Consensus 19 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 96 (323)
T d1fcha_ 19 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD--PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVS 96 (323)
T ss_dssp CSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccccccccccccccc
Confidence 3444566677889999999999999999987 7888888889999999999999999998764 4567888889999
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHHH----------------HHHHHHHHHHcCCHhHHHHHHHHHHHcCC-CCCHHH
Q 011323 102 CASSKDSEGAFQVLRLVQEAGLKADCKL----------------YTTLITTCAKSGKVDAMFEVFHEMVNAGI-EPNVHT 164 (488)
Q Consensus 102 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~----------------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~ 164 (488)
+...|++++|.+.++...... |+... ....+..+...+...++.+.+....+... .++..+
T Consensus 97 ~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~ 174 (323)
T d1fcha_ 97 FTNESLQRQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDV 174 (323)
T ss_dssp HHHTTCHHHHHHHHHHHHHTS--TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHH
T ss_pred ccccccccccccchhhHHHhc--cchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhccccccc
Confidence 999999999999999887643 22111 11112222333445555555555544321 223455
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCC-CcchHHHHHHH
Q 011323 165 YGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDP-DHITIGALMKA 243 (488)
Q Consensus 165 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~~l~~~ 243 (488)
+..+...+...|++++|+..|++..... +-+..+|..+..++...|++++|.+.|++.... .| +..++..+..+
T Consensus 175 ~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----~p~~~~a~~~lg~~ 249 (323)
T d1fcha_ 175 QCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALEL----QPGYIRSRYNLGIS 249 (323)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHHHH----hhccHHHHHHHHHH
Confidence 5555666666666666666666655442 223555555666666666666666666665542 22 22345555556
Q ss_pred HHhcCCHHHHHHHHHHHHh
Q 011323 244 CANAGQVDRAREVYKMIHK 262 (488)
Q Consensus 244 ~~~~~~~~~a~~~~~~~~~ 262 (488)
|.+.|++++|...|++..+
T Consensus 250 ~~~~g~~~~A~~~~~~al~ 268 (323)
T d1fcha_ 250 CINLGAHREAVEHFLEALN 268 (323)
T ss_dssp HHHHTCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 6666666666666655544
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.27 E-value=1e-09 Score=95.42 Aligned_cols=194 Identities=10% Similarity=0.010 Sum_probs=97.6
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCc-chHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 011323 199 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH-ITIGALMKACANAG-QVDRAREVYKMIHKYNIKGTPEVYTIAI 276 (488)
Q Consensus 199 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 276 (488)
.++.+...+.+.+..++|+++++.+... .|+. ..|+....++...| ++++|+..++.+.... +.+..+|..+.
T Consensus 45 a~~~~~~~~~~~e~~~~Al~~~~~ai~l----nP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~ 119 (315)
T d2h6fa1 45 VYDYFRAVLQRDERSERAFKLTRDAIEL----NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRR 119 (315)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHH----CCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHh
Confidence 3444444455555556666666655542 3332 23444444444443 3556666665555544 34555555555
Q ss_pred HHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCC--
Q 011323 277 NCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN-- 354 (488)
Q Consensus 277 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-- 354 (488)
..+.+.|++++|+..++++.+..+. +...|..+...+.+.|++++|++.++.+.+.+ +-+...|+.+..++.+.+.
T Consensus 120 ~~~~~l~~~~eAl~~~~kal~~dp~-n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~a~~~r~~~l~~~~~~~ 197 (315)
T d2h6fa1 120 VLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYN 197 (315)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSC
T ss_pred HHHHhhccHHHHHHHHhhhhhhhhc-chHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-CccHHHHHHHHHHHHHccccc
Confidence 5555566666666666655554333 45555555555555566666666665555543 2234455544444443333
Q ss_pred ----HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 011323 355 ----WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMK 401 (488)
Q Consensus 355 ----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 401 (488)
+++|...+..+.+.. +.+...|..+...+.. ...+++.+.++...
T Consensus 198 ~~~~~~~ai~~~~~al~~~-P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~ 246 (315)
T d2h6fa1 198 DRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQD-RGLSKYPNLLNQLL 246 (315)
T ss_dssp SHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTT-TCGGGCHHHHHHHH
T ss_pred hhhhhHHhHHHHHHHHHhC-CCchHHHHHHHHHHHh-cChHHHHHHHHHHH
Confidence 345555555554443 2344444444333322 22344555554444
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.25 E-value=3.5e-09 Score=91.91 Aligned_cols=228 Identities=9% Similarity=0.001 Sum_probs=104.6
Q ss_pred hHHHHHHHHh----c--------CCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhh--------------HHHHHHH
Q 011323 28 QLHSYNRLIR----Q--------GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQ--------------KAIKEAF 81 (488)
Q Consensus 28 ~~~~~~~l~~----~--------g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------------~~~~~A~ 81 (488)
.+..|..+++ + +..+.+..+|++++... |....+....+.+.... +..++|.
T Consensus 7 ~~~~W~~yi~~E~~~~~~~~~~~~~~~Rv~~vyerAl~~~--~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 84 (308)
T d2onda1 7 QVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL--GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAA 84 (308)
T ss_dssp HHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccccccchhHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHH
Confidence 5567777773 1 12456777888888765 44544444444443322 2334455
Q ss_pred HHhhhCC----CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcC
Q 011323 82 RFFKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAG 157 (488)
Q Consensus 82 ~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 157 (488)
.+|+++. +.+...|...+......|+++.|..+|+.+.+.........|...+..+.+.|+.+.|.++|+...+.+
T Consensus 85 ~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~ 164 (308)
T d2onda1 85 NIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA 164 (308)
T ss_dssp HHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Confidence 5554421 233344444445555555555555555555443211122344555555555555555555555554432
Q ss_pred CCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCC--c
Q 011323 158 IEPNVHTYGALIDG-CAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD--H 234 (488)
Q Consensus 158 ~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~ 234 (488)
+.+...|...... +...|+.+.|..+|+.+.... +.+...|...+..+.+.|+++.|..+|++..... +..|+ .
T Consensus 165 -~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~-p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~-~~~~~~~~ 241 (308)
T d2onda1 165 -RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG-SLPPEKSG 241 (308)
T ss_dssp -TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSS-SSCGGGCH
T ss_pred -CCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHH
Confidence 1122222222221 222345555555555554431 2334444555555555555555555555544321 11221 1
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHH
Q 011323 235 ITIGALMKACANAGQVDRAREVYKMI 260 (488)
Q Consensus 235 ~~~~~l~~~~~~~~~~~~a~~~~~~~ 260 (488)
..|...+..-...|+.+.+..+++.+
T Consensus 242 ~iw~~~~~fE~~~G~~~~~~~~~~r~ 267 (308)
T d2onda1 242 EIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 23444444334445555555444444
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.24 E-value=1.5e-08 Score=89.75 Aligned_cols=268 Identities=11% Similarity=-0.002 Sum_probs=155.7
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCC-CCC----HHHHHHHH
Q 011323 99 MSVCASSKDSEGAFQVLRLVQEAGLKAD----CKLYTTLITTCAKSGKVDAMFEVFHEMVNAGI-EPN----VHTYGALI 169 (488)
Q Consensus 99 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~ 169 (488)
...+...|++++|+++++...+.....+ ..++..+..++...|++++|.+.++...+... .++ ...+..+.
T Consensus 19 A~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 98 (366)
T d1hz4a_ 19 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 98 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence 4456677777777777777765431111 23556666777777888888877777654210 111 23445566
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC----CCCCC---HhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCC--CcchHHHH
Q 011323 170 DGCAKAGQVAKAFGAYGIMRSK----NVKPD---RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDP--DHITIGAL 240 (488)
Q Consensus 170 ~~~~~~~~~~~a~~~~~~~~~~----~~~~~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~~l 240 (488)
..+...|++..+...+...... +.... ...+..+...+...|+++.+...+...........+ ....+...
T Consensus 99 ~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (366)
T d1hz4a_ 99 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML 178 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHH
Confidence 6677778887777777665431 11111 123445556677778888887777776553221111 12233444
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcC--CCCC----HHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCC---CHHHHHHHH
Q 011323 241 MKACANAGQVDRAREVYKMIHKYN--IKGT----PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP---DEVFLSALI 311 (488)
Q Consensus 241 ~~~~~~~~~~~~a~~~~~~~~~~~--~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~ 311 (488)
...+...+++..+...+....... .... ...+......+...|+++.|...+.......... ....+..+.
T Consensus 179 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la 258 (366)
T d1hz4a_ 179 IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIA 258 (366)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 555666777777777666543321 1111 2234555666677777777777777655432221 234455566
Q ss_pred HHHHhcCCHHHHHHHHHHHHH----CCCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011323 312 DFAGHAGKVEAAFEILQEAKN----QGISV-GIISYSSLMGACSNAKNWQKALELYEHMK 366 (488)
Q Consensus 312 ~~~~~~g~~~~a~~~~~~~~~----~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 366 (488)
.++...|++++|...++.... .+..| ....+..+..+|...|++++|.+.+++..
T Consensus 259 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al 318 (366)
T d1hz4a_ 259 RAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 318 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 677777777777777776542 22222 23456666677777777777777777654
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.24 E-value=5.7e-09 Score=92.61 Aligned_cols=167 Identities=11% Similarity=-0.037 Sum_probs=97.5
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhCC----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCc--cHH
Q 011323 271 VYTIAINCCSQTGDWEFACSVYDDMTKKG----VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ----GISV--GII 340 (488)
Q Consensus 271 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~--~~~ 340 (488)
.+..+...+...|+++.+...+....... .......+......+...++...+...+...... +..+ ...
T Consensus 135 ~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~ 214 (366)
T d1hz4a_ 135 LVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISN 214 (366)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHH
T ss_pred HHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHH
Confidence 34444555666666666666666554321 1112334444455566666666666666554431 1111 123
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHcCCChhHHHHHHHHHHh----CCCCCC-HHHH
Q 011323 341 SYSSLMGACSNAKNWQKALELYEHMKSIKLKP---TVSTMNALITALCDGDQLPKTMEVLSDMKS----LGLCPN-TITY 412 (488)
Q Consensus 341 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~p~-~~~~ 412 (488)
.+......+...|+++.|...++......... ....+..+...+...|++++|...+++... .+..|+ ...+
T Consensus 215 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 294 (366)
T d1hz4a_ 215 ANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNL 294 (366)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHH
Confidence 44555666677778888877777665432221 233445566777778888888887777642 233343 4456
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHH
Q 011323 413 SILLVACERKDDVEVGLMLLSQAKE 437 (488)
Q Consensus 413 ~~l~~~~~~~g~~~~a~~~~~~~~~ 437 (488)
..+...+...|++++|.+.+++..+
T Consensus 295 ~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 295 LLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 6777778888888888888877654
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.22 E-value=9.5e-09 Score=89.12 Aligned_cols=213 Identities=8% Similarity=0.042 Sum_probs=139.9
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-CHhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 011323 93 STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG-KVDAMFEVFHEMVNAGIEPNVHTYGALIDG 171 (488)
Q Consensus 93 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 171 (488)
..++.+..++.+.+.+++|+++++.+.+.+ |-+...|+....++...| ++++|++.++...+.. +-+..+|+.+...
T Consensus 44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~~ 121 (315)
T d2h6fa1 44 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL 121 (315)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhHH
Confidence 355666666777777888888888877764 456667777777777765 4778888887777663 3357777777777
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCC-CcchHHHHHHHHHhcCC-
Q 011323 172 CAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDP-DHITIGALMKACANAGQ- 249 (488)
Q Consensus 172 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~- 249 (488)
+.+.|++++|+..++++.+.. +.+...|..+...+...|++++|++.++.+... .| +...|+.+..++.+.+.
T Consensus 122 ~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~----~p~n~~a~~~r~~~l~~~~~~ 196 (315)
T d2h6fa1 122 VEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE----DVRNNSVWNQRYFVISNTTGY 196 (315)
T ss_dssp HHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCS
T ss_pred HHhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHH----CCccHHHHHHHHHHHHHcccc
Confidence 778888888888888777664 445777777777777778888888888777664 23 33455555555555444
Q ss_pred -----HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHH
Q 011323 250 -----VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP-DEVFLSALIDFA 314 (488)
Q Consensus 250 -----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~ 314 (488)
+++|...+..+.+.. +.+...+..+...+.. ...+++.+.++...+....+ +...+..++..|
T Consensus 197 ~~~~~~~~ai~~~~~al~~~-P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y 265 (315)
T d2h6fa1 197 NDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQD-RGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIY 265 (315)
T ss_dssp CSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTT-TCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred chhhhhHHhHHHHHHHHHhC-CCchHHHHHHHHHHHh-cChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHH
Confidence 567777777777665 4566666666555444 33566666666665433222 344455555544
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.22 E-value=4e-09 Score=91.48 Aligned_cols=189 Identities=15% Similarity=0.098 Sum_probs=146.8
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 011323 248 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 327 (488)
Q Consensus 248 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 327 (488)
+..+++..+|+...+...+.+...+...+......|+++.|..+|+++.+.........|...+..+.+.|+.+.|.++|
T Consensus 78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~ 157 (308)
T d2onda1 78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF 157 (308)
T ss_dssp HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence 34577888888888765566777888888888899999999999999887655444567888888888999999999999
Q ss_pred HHHHHCCCCccHHHHHHHHHH-HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCC-C
Q 011323 328 QEAKNQGISVGIISYSSLMGA-CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG-L 405 (488)
Q Consensus 328 ~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~ 405 (488)
..+.+.+. .+...|...... +...|+.+.|..+|+.+.... +.+...|...+..+.+.|++++|..+|++..... .
T Consensus 158 ~~al~~~~-~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~-p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~ 235 (308)
T d2onda1 158 KKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 235 (308)
T ss_dssp HHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred HHHHHhCC-CcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence 99887753 344444444333 345688999999999988753 5567889999999999999999999999987642 3
Q ss_pred CCC--HHHHHHHHHHHhhcCCHHHHHHHHHHHHHc
Q 011323 406 CPN--TITYSILLVACERKDDVEVGLMLLSQAKED 438 (488)
Q Consensus 406 ~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 438 (488)
.|. ...|...+.--...|+.+.+..+++++.+.
T Consensus 236 ~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~ 270 (308)
T d2onda1 236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 333 356888888778889999999999888664
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.12 E-value=3.4e-09 Score=89.47 Aligned_cols=116 Identities=11% Similarity=-0.044 Sum_probs=52.8
Q ss_pred CHHHHHHHHHHHHHCCCC--CchHHHHHHHHHHHhhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHhcCChhHHHHH
Q 011323 40 RISECIDLLEDMERKGLL--DMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQV 114 (488)
Q Consensus 40 ~~~~A~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~ 114 (488)
+.+.|+.-++++...... +....++..++.++...|++++|++.|+++. +.++.+|+.+..++.+.|++++|++.
T Consensus 14 ~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~ 93 (259)
T d1xnfa_ 14 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEA 93 (259)
T ss_dssp HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhh
Confidence 344455555555543211 1122333344444444555555555554432 33444444455555555555555555
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHc
Q 011323 115 LRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA 156 (488)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 156 (488)
|+++.+.. +.+..++..+..++...|++++|.+.|+...+.
T Consensus 94 ~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~ 134 (259)
T d1xnfa_ 94 FDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD 134 (259)
T ss_dssp HHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHH-hhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 55544432 223344444444445555555555555544443
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.10 E-value=2.8e-09 Score=90.05 Aligned_cols=198 Identities=10% Similarity=-0.055 Sum_probs=122.2
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 011323 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDG 171 (488)
Q Consensus 92 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 171 (488)
..+|..+...|.+.|++++|++.|++..+.. |-++.+|..+..++.+.|++++|++.|++..+.. +-+..++..+..+
T Consensus 37 a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~ 114 (259)
T d1xnfa_ 37 AQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIA 114 (259)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHH-hhhhhhHHHHHHH
Confidence 3466677788888999999999999888764 5577888889999999999999999999988864 3356778888888
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCCH-
Q 011323 172 CAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV- 250 (488)
Q Consensus 172 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~- 250 (488)
|...|++++|...|+...+.. +.+......+..++.+.+..+.+..+....... .++...+. ++..+......
T Consensus 115 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~-~~~~~~~~~~~~ 188 (259)
T d1xnfa_ 115 LYYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS----DKEQWGWN-IVEFYLGNISEQ 188 (259)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS----CCCSTHHH-HHHHHTTSSCHH
T ss_pred HHHHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhcc----chhhhhhh-HHHHHHHHHHHH
Confidence 889999999999998887764 334444444444455555555555554444432 12222222 22222221111
Q ss_pred ---HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhC
Q 011323 251 ---DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 298 (488)
Q Consensus 251 ---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 298 (488)
+.+...+....... +....++..+...+...|++++|...|++....
T Consensus 189 ~~~~~~~~~~~~~~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 238 (259)
T d1xnfa_ 189 TLMERLKADATDNTSLA-EHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 238 (259)
T ss_dssp HHHHHHHHHCCSHHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhhcC-cccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 11111111111100 111234555666666667777777777666654
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.06 E-value=1.9e-09 Score=94.96 Aligned_cols=145 Identities=6% Similarity=-0.042 Sum_probs=73.0
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH----------HcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 011323 105 SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCA----------KSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAK 174 (488)
Q Consensus 105 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 174 (488)
.+..++|+++++...+.. |-+...|+..-..+. ..|++++|+.+++...+.. +.+...|..+..++..
T Consensus 42 ~~~~~~al~~~~~~l~~~-P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~ 119 (334)
T d1dcea1 42 GELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSR 119 (334)
T ss_dssp TCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred ccccHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHH
Confidence 334467777777776653 223334433222222 2233556666666665542 3345555555555554
Q ss_pred cC--CHHHHHHHHHHHHhCCCCCCHhHHHH-HHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcCCHH
Q 011323 175 AG--QVAKAFGAYGIMRSKNVKPDRVVFNA-LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD 251 (488)
Q Consensus 175 ~~--~~~~a~~~~~~~~~~~~~~~~~~~~~-ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 251 (488)
.+ ++++|...+..+.... +++...+.. ....+...+..++|+..++.+.... +.+...|..+..++.+.|+++
T Consensus 120 ~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~---p~~~~a~~~l~~~~~~~~~~~ 195 (334)
T d1dcea1 120 LPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN---FSNYSSWHYRSCLLPQLHPQP 195 (334)
T ss_dssp CSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT---CCCHHHHHHHHHHHHHHSCCC
T ss_pred hccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHhcCHH
Confidence 43 3566666666665542 223443332 3344555566666666666655431 123344555555555666555
Q ss_pred HHHH
Q 011323 252 RARE 255 (488)
Q Consensus 252 ~a~~ 255 (488)
+|..
T Consensus 196 ~A~~ 199 (334)
T d1dcea1 196 DSGP 199 (334)
T ss_dssp CSSS
T ss_pred HHHH
Confidence 4443
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.03 E-value=2.5e-09 Score=94.12 Aligned_cols=225 Identities=8% Similarity=-0.074 Sum_probs=136.6
Q ss_pred CCHHHHHHHHHHHhhCCCCCCC-CcchHHHHHHHHHhcC--CHHHHHHHHHHHHhcCCCCCHHHH-HHHHHHHHccCChH
Q 011323 211 GAVDRAFDVLAEMNAEVHPVDP-DHITIGALMKACANAG--QVDRAREVYKMIHKYNIKGTPEVY-TIAINCCSQTGDWE 286 (488)
Q Consensus 211 g~~~~a~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~ 286 (488)
|.+++|+.+++..... .| +...|..+..++...+ +++++...+..+.... +++...+ ......+...+.++
T Consensus 87 ~~~~~al~~~~~~l~~----~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~ 161 (334)
T d1dcea1 87 ALVKAELGFLESCLRV----NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPA 161 (334)
T ss_dssp HHHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHH
T ss_pred HHHHHHHHHHHHHHHh----CCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccH
Confidence 3455666666666543 23 2234444444444443 4667777777766654 3344443 33445566667777
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011323 287 FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 366 (488)
Q Consensus 287 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 366 (488)
.|...++...+..+. +...+..+..++.+.|++++|...+....+.. | .. ..+...+...+..+++...+....
T Consensus 162 ~Al~~~~~~i~~~p~-~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~--~~-~~~~~~~~~l~~~~~a~~~~~~~l 235 (334)
T d1dcea1 162 EELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVL--L--KE-LELVQNAFFTDPNDQSAWFYHRWL 235 (334)
T ss_dssp HHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHH--H--HH-HHHHHHHHHHCSSCSHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhH--H--HH-HHHHHHHHHhcchhHHHHHHHHHH
Confidence 777777777666554 66667777777777777666654444333221 1 11 122233445556666777777766
Q ss_pred hCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHH-
Q 011323 367 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV- 445 (488)
Q Consensus 367 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~- 445 (488)
... +++...+..+...+...|+.++|...+.+..... +.+...+..+...+...|++++|.++++++.+ +.|+..
T Consensus 236 ~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~--ldP~~~~ 311 (334)
T d1dcea1 236 LGR-AEPLFRCELSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKA--VDPMRAA 311 (334)
T ss_dssp HSC-CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHH--HCGGGHH
T ss_pred HhC-cchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCcccHH
Confidence 554 3455556666677777788888888888877642 23466777888888889999999999998887 456543
Q ss_pred HHHHH
Q 011323 446 MFKCI 450 (488)
Q Consensus 446 ~~~~l 450 (488)
.|..+
T Consensus 312 y~~~L 316 (334)
T d1dcea1 312 YLDDL 316 (334)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 34434
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.81 E-value=4.4e-07 Score=71.90 Aligned_cols=124 Identities=15% Similarity=-0.007 Sum_probs=99.1
Q ss_pred HHHHhhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHH
Q 011323 68 FNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147 (488)
Q Consensus 68 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 147 (488)
+..+...|+++.|++.|..+.+++..+|..+..++...|++++|++.|++..+.. +.+...|..+..++.+.|++++|.
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~~~A~ 90 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDLAI 90 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccHHHHH
Confidence 3445567889999999998888888888889999999999999999999998876 567888999999999999999999
Q ss_pred HHHHHHHHcCC--------------CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 011323 148 EVFHEMVNAGI--------------EPN-VHTYGALIDGCAKAGQVAKAFGAYGIMRSKN 192 (488)
Q Consensus 148 ~~~~~~~~~~~--------------~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 192 (488)
+.|++.+.... .++ ..++..+..++.+.|++++|.+.+.......
T Consensus 91 ~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~ 150 (192)
T d1hh8a_ 91 KDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 150 (192)
T ss_dssp HHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 99988765310 011 2456667778888999999999888887664
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.72 E-value=9.4e-07 Score=75.36 Aligned_cols=181 Identities=10% Similarity=-0.023 Sum_probs=116.2
Q ss_pred hhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHHcCCHhHH
Q 011323 72 KSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEA----GLKA-DCKLYTTLITTCAKSGKVDAM 146 (488)
Q Consensus 72 ~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a 146 (488)
...+++++|.++|.+ ....|...+++++|.+.|.+..+. +-++ -..+|..+..+|.+.|++++|
T Consensus 28 ~~~~~~~~Aa~~y~~-----------aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A 96 (290)
T d1qqea_ 28 SDSYKFEEAADLCVQ-----------AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (290)
T ss_dssp CSHHHHHHHHHHHHH-----------HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred CccccHHHHHHHHHH-----------HHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHH
Confidence 334567888777654 356788899999999999877642 1111 235788889999999999999
Q ss_pred HHHHHHHHHc----CC-CCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhC----CCCCC-HhHHHHHHHHHHccCCHHH
Q 011323 147 FEVFHEMVNA----GI-EPNVHTYGALIDGCAK-AGQVAKAFGAYGIMRSK----NVKPD-RVVFNALITACGQSGAVDR 215 (488)
Q Consensus 147 ~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~ll~~~~~~g~~~~ 215 (488)
.+.++...+. |. .....++..+...|.. .|++++|+..|++..+. +.++. ..++..+...+...|++++
T Consensus 97 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~ 176 (290)
T d1qqea_ 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (290)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHH
Confidence 9998876542 11 1113455566666644 58899999888876532 21111 3456667778888888888
Q ss_pred HHHHHHHHhhCCCCCCCCc----chHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 011323 216 AFDVLAEMNAEVHPVDPDH----ITIGALMKACANAGQVDRAREVYKMIHKY 263 (488)
Q Consensus 216 a~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 263 (488)
|.+.|+++........... ..+...+..+...|+++.|...++...+.
T Consensus 177 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~ 228 (290)
T d1qqea_ 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE 228 (290)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC
T ss_pred HHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 8888888765421111000 01223334455667777777777766654
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.65 E-value=8.8e-07 Score=70.08 Aligned_cols=125 Identities=9% Similarity=-0.045 Sum_probs=79.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhH
Q 011323 313 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 392 (488)
Q Consensus 313 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 392 (488)
.+...|+++.|++.|.++ .++++.++..+..+|...|++++|.+.|++.++.+ +.+...|..+..+|.+.|++++
T Consensus 14 ~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~~~ 88 (192)
T d1hh8a_ 14 LAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDL 88 (192)
T ss_dssp HHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccHHH
Confidence 345566666666666543 23455566666666667777777777776666654 4456666666666667777777
Q ss_pred HHHHHHHHHhCC--------------CCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCC
Q 011323 393 TMEVLSDMKSLG--------------LCPN-TITYSILLVACERKDDVEVGLMLLSQAKEDGVIP 442 (488)
Q Consensus 393 a~~~~~~~~~~~--------------~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 442 (488)
|++.|++..... ..++ ..++..+..++.+.|++++|.+.++.+.+....+
T Consensus 89 A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~ 153 (192)
T d1hh8a_ 89 AIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 153 (192)
T ss_dssp HHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 766666654321 0111 2455567777888888988888888877654444
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.61 E-value=2.3e-06 Score=61.34 Aligned_cols=91 Identities=14% Similarity=0.058 Sum_probs=65.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 011323 99 MSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQV 178 (488)
Q Consensus 99 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 178 (488)
...+...|++++|+..|+...+.. |.+...|..+..++...|++++|++.++...+.. +.+...|..+..++...|++
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~~ 87 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNRF 87 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHccCH
Confidence 455667777777777777777664 5566677777777777777777777777777664 44667777777777777777
Q ss_pred HHHHHHHHHHHhC
Q 011323 179 AKAFGAYGIMRSK 191 (488)
Q Consensus 179 ~~a~~~~~~~~~~ 191 (488)
++|+..|++..+.
T Consensus 88 ~~A~~~~~~a~~~ 100 (117)
T d1elwa_ 88 EEAKRTYEEGLKH 100 (117)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHh
Confidence 7777777777765
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.57 E-value=2.3e-06 Score=61.32 Aligned_cols=89 Identities=17% Similarity=0.094 Sum_probs=45.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChh
Q 011323 312 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 391 (488)
Q Consensus 312 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 391 (488)
..+...|++++|+..|.+..+.. +.++..|..+..+|.+.|++++|...+....+.+ +.+...|..+..++...|+++
T Consensus 11 ~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~~~ 88 (117)
T d1elwa_ 11 NKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNRFE 88 (117)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHccCHH
Confidence 33444555555555555554443 3344455555555555555555555555554443 334455555555555555555
Q ss_pred HHHHHHHHHHh
Q 011323 392 KTMEVLSDMKS 402 (488)
Q Consensus 392 ~a~~~~~~~~~ 402 (488)
+|+..+++..+
T Consensus 89 ~A~~~~~~a~~ 99 (117)
T d1elwa_ 89 EAKRTYEEGLK 99 (117)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 55555555554
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.55 E-value=1.6e-06 Score=73.88 Aligned_cols=167 Identities=10% Similarity=0.048 Sum_probs=84.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcC----CC-CCHHHHHHHHHHHHccCChHHHHHHHHHHHhC----CC-CCCHH
Q 011323 236 TIGALMKACANAGQVDRAREVYKMIHKYN----IK-GTPEVYTIAINCCSQTGDWEFACSVYDDMTKK----GV-IPDEV 305 (488)
Q Consensus 236 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~ 305 (488)
.|......|...+++++|.+.|.++.+.. -+ ....+|..+..+|.+.|++++|.+.+++..+. |. .....
T Consensus 39 ~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 118 (290)
T d1qqea_ 39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGAN 118 (290)
T ss_dssp HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHH
Confidence 35555566666666677666666554421 01 11235566666666666666666666654432 11 00123
Q ss_pred HHHHHHHHHHh-cCCHHHHHHHHHHHHHC----CCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-----
Q 011323 306 FLSALIDFAGH-AGKVEAAFEILQEAKNQ----GISV-GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV----- 374 (488)
Q Consensus 306 ~~~~l~~~~~~-~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----- 374 (488)
++..+...|.. .|++++|++.+.+..+. +.++ ...++..+...+...|++++|...|+++.........
T Consensus 119 ~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~ 198 (290)
T d1qqea_ 119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSL 198 (290)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGH
T ss_pred HHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhH
Confidence 34444444433 46666666666655431 1111 1234555566666666666666666665543211110
Q ss_pred -HHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 011323 375 -STMNALITALCDGDQLPKTMEVLSDMKS 402 (488)
Q Consensus 375 -~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 402 (488)
..+...+..+...|+++.|.+.+++..+
T Consensus 199 ~~~~~~~~~~~l~~~d~~~A~~~~~~~~~ 227 (290)
T d1qqea_ 199 KDYFLKKGLCQLAATDAVAAARTLQEGQS 227 (290)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 1122333444556666666666666554
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.54 E-value=4e-07 Score=65.69 Aligned_cols=108 Identities=14% Similarity=0.045 Sum_probs=71.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCh---hHHHHHHHHHHhCCCCCC-HHHHHHHHHH
Q 011323 343 SSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL---PKTMEVLSDMKSLGLCPN-TITYSILLVA 418 (488)
Q Consensus 343 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~p~-~~~~~~l~~~ 418 (488)
..++..+...+++++|.+.|+.....+ +.+..++..+..++.+.++. ++|+.+++++...+..|+ ..++..+..+
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 355666777777778888887777665 55667777777777765443 457777777766432222 2356677777
Q ss_pred HhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 011323 419 CERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGM 453 (488)
Q Consensus 419 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 453 (488)
|.+.|++++|++.|+++++ +.|+..-...+...
T Consensus 82 y~~~g~~~~A~~~~~~aL~--~~P~~~~A~~l~~~ 114 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQ--TEPQNNQAKELERL 114 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHH--hCcCCHHHHHHHHH
Confidence 7788888888888887777 44665544444443
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.51 E-value=2.6e-06 Score=65.08 Aligned_cols=92 Identities=9% Similarity=0.003 Sum_probs=60.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCC
Q 011323 345 LMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 424 (488)
Q Consensus 345 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 424 (488)
-...|.+.|++++|...|+++.+.. +.+...|..+..+|...|++++|+..|++.++.. +-+...|..+..++...|+
T Consensus 16 ~gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~g~ 93 (159)
T d1a17a_ 16 QANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGK 93 (159)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHcCC
Confidence 3445667777777777777766654 4456666667777777777777777777766532 3345666667777777777
Q ss_pred HHHHHHHHHHHHHc
Q 011323 425 VEVGLMLLSQAKED 438 (488)
Q Consensus 425 ~~~a~~~~~~~~~~ 438 (488)
+++|...++++.+.
T Consensus 94 ~~eA~~~~~~a~~~ 107 (159)
T d1a17a_ 94 FRAALRDYETVVKV 107 (159)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc
Confidence 77777777776664
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.48 E-value=3.5e-06 Score=64.35 Aligned_cols=93 Identities=11% Similarity=0.004 Sum_probs=77.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC
Q 011323 309 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 388 (488)
Q Consensus 309 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 388 (488)
.....|.+.|++++|+..|++..+.. +.+...|..+..+|...|++++|...|+++.+.. +.+...|..+..++...|
T Consensus 15 ~~gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~g 92 (159)
T d1a17a_ 15 TQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALG 92 (159)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHcC
Confidence 34556778899999999998888875 4578888888889999999999999999888765 556788888889999999
Q ss_pred ChhHHHHHHHHHHhC
Q 011323 389 QLPKTMEVLSDMKSL 403 (488)
Q Consensus 389 ~~~~a~~~~~~~~~~ 403 (488)
++++|...+++....
T Consensus 93 ~~~eA~~~~~~a~~~ 107 (159)
T d1a17a_ 93 KFRAALRDYETVVKV 107 (159)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHc
Confidence 999999999988874
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.46 E-value=1.7e-06 Score=69.22 Aligned_cols=99 Identities=12% Similarity=-0.001 Sum_probs=88.0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 011323 302 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI 381 (488)
Q Consensus 302 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 381 (488)
|+...+......+.+.|++++|+..|.+..+.. +.++..|..+..+|.+.|++++|...|+...+.. +-+..+|..+.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~-p~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC-CCcHHHHHHHH
Confidence 677788888899999999999999999988875 5578899999999999999999999999998765 44678899999
Q ss_pred HHHHcCCChhHHHHHHHHHHh
Q 011323 382 TALCDGDQLPKTMEVLSDMKS 402 (488)
Q Consensus 382 ~~~~~~~~~~~a~~~~~~~~~ 402 (488)
.+|...|++++|+..|++..+
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 999999999999999998875
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.42 E-value=2.7e-06 Score=67.91 Aligned_cols=100 Identities=10% Similarity=0.004 Sum_probs=89.3
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHH
Q 011323 267 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM 346 (488)
Q Consensus 267 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 346 (488)
|+...+....+.+.+.|++++|+..|.+.+...+. +...|..+..+|.+.|+++.|+..|+...+.. +-+...|..+.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~-~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~-p~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC-CCcHHHHHHHH
Confidence 67778888899999999999999999998887654 88899999999999999999999999998864 34678899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC
Q 011323 347 GACSNAKNWQKALELYEHMKSI 368 (488)
Q Consensus 347 ~~~~~~g~~~~a~~~~~~~~~~ 368 (488)
.+|...|++++|...|+++.+.
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~l 101 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYSL 101 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHh
Confidence 9999999999999999988753
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.41 E-value=0.00033 Score=58.10 Aligned_cols=96 Identities=9% Similarity=-0.041 Sum_probs=56.7
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHhHHHHHHHHHHHcCCCCCHHHHH
Q 011323 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK----SGKVDAMFEVFHEMVNAGIEPNVHTYG 166 (488)
Q Consensus 91 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 166 (488)
|+..+..|...+.+.+++++|++.|++..+.| +...+..|...|.. ..+...+...+......+ +.....
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~ 74 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 74 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhh
Confidence 34555566666666777777777777776654 44555555555554 456667777776666543 333333
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHhCC
Q 011323 167 ALIDGCAK----AGQVAKAFGAYGIMRSKN 192 (488)
Q Consensus 167 ~l~~~~~~----~~~~~~a~~~~~~~~~~~ 192 (488)
.+...+.. ..+.+.|...++.....|
T Consensus 75 ~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g 104 (265)
T d1ouva_ 75 LLGNLYYSGQGVSQNTNKALQYYSKACDLK 104 (265)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred ccccccccccccchhhHHHHHHHhhhhhhh
Confidence 33333332 345666777777666655
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.32 E-value=3.1e-06 Score=60.87 Aligned_cols=100 Identities=13% Similarity=0.045 Sum_probs=68.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCC-HHHHHHHHHH
Q 011323 308 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN---WQKALELYEHMKSIKLKPT-VSTMNALITA 383 (488)
Q Consensus 308 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~ 383 (488)
..+++.+...+++++|.+.|+.....+ +.++.++..+..++.+.++ +++|+.+++++...+..|+ ..+|..+..+
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 456666777778888888888777765 4567777777777776544 4467778877776542232 2356677778
Q ss_pred HHcCCChhHHHHHHHHHHhCCCCCCHH
Q 011323 384 LCDGDQLPKTMEVLSDMKSLGLCPNTI 410 (488)
Q Consensus 384 ~~~~~~~~~a~~~~~~~~~~~~~p~~~ 410 (488)
|.+.|++++|++.|+++++ +.|+..
T Consensus 82 y~~~g~~~~A~~~~~~aL~--~~P~~~ 106 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQ--TEPQNN 106 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HCTTCH
T ss_pred HHHHhhhHHHHHHHHHHHH--hCcCCH
Confidence 8888888888888888776 345533
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.30 E-value=0.00061 Score=56.42 Aligned_cols=80 Identities=14% Similarity=0.103 Sum_probs=36.7
Q ss_pred CHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----CCCh
Q 011323 319 KVEAAFEILQEAKNQGISVGIISYSSLMGACSN----AKNWQKALELYEHMKSIKLKPTVSTMNALITALCD----GDQL 390 (488)
Q Consensus 319 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~ 390 (488)
+...+...++...+.| ++.....+...|.. .++.++|...|+...+.| ++..+..|...|.+ .++.
T Consensus 161 ~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~~y~~G~g~~~n~ 234 (265)
T d1ouva_ 161 DLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNE 234 (265)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCS
T ss_pred ccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHHHHHHcCCCCccCH
Confidence 3444444544444433 33333334333333 345555555555555543 23333444444433 2245
Q ss_pred hHHHHHHHHHHhCC
Q 011323 391 PKTMEVLSDMKSLG 404 (488)
Q Consensus 391 ~~a~~~~~~~~~~~ 404 (488)
++|.+.|++..+.|
T Consensus 235 ~~A~~~~~kAa~~g 248 (265)
T d1ouva_ 235 KQAIENFKKGCKLG 248 (265)
T ss_dssp TTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCc
Confidence 55555555555444
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.29 E-value=6.8e-06 Score=58.22 Aligned_cols=88 Identities=10% Similarity=-0.019 Sum_probs=51.1
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 011323 99 MSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQV 178 (488)
Q Consensus 99 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 178 (488)
...+.+.|++++|+..|++..+.. +-+..+|..+..++.+.|++++|+..|++..+.. +.+...|..+...|...|++
T Consensus 23 g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~g~~ 100 (112)
T d1hxia_ 23 GLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNA 100 (112)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHCCCH
Confidence 344555666666666666665543 3345566666666666666666666666655543 23455566666666666666
Q ss_pred HHHHHHHHHH
Q 011323 179 AKAFGAYGIM 188 (488)
Q Consensus 179 ~~a~~~~~~~ 188 (488)
++|++.+++.
T Consensus 101 ~~A~~~l~~~ 110 (112)
T d1hxia_ 101 NAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666666553
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.29 E-value=4.1e-06 Score=59.39 Aligned_cols=89 Identities=11% Similarity=0.031 Sum_probs=55.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCC
Q 011323 345 LMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 424 (488)
Q Consensus 345 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 424 (488)
....+.+.|++++|...|++..+.. +-+...|..+..++.+.|++++|+..+++..+.. +.+...+..+...|...|+
T Consensus 22 ~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~g~ 99 (112)
T d1hxia_ 22 EGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHN 99 (112)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHCCC
Confidence 3445566666667766666666554 3356666666666666677777777666666532 3345666666666666777
Q ss_pred HHHHHHHHHHH
Q 011323 425 VEVGLMLLSQA 435 (488)
Q Consensus 425 ~~~a~~~~~~~ 435 (488)
+++|.+.+++.
T Consensus 100 ~~~A~~~l~~~ 110 (112)
T d1hxia_ 100 ANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77776666654
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.21 E-value=3.1e-05 Score=58.28 Aligned_cols=82 Identities=20% Similarity=0.114 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 011323 375 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 454 (488)
Q Consensus 375 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 454 (488)
.+|..+..+|.+.|++++|++.++..++.. +.+..+|..+..++...|++++|+..|++..+. .|+.......+..+
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l--~P~n~~~~~~l~~~ 144 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASL--NPNNLDIRNSYELC 144 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHH
T ss_pred HHHhhHHHHHHHhcccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 466778888999999999999999988753 446788999999999999999999999998884 46555444444444
Q ss_pred hhcHH
Q 011323 455 SRRYE 459 (488)
Q Consensus 455 ~~~~~ 459 (488)
..+.+
T Consensus 145 ~~kl~ 149 (153)
T d2fbna1 145 VNKLK 149 (153)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 33333
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.11 E-value=5.3e-05 Score=58.13 Aligned_cols=62 Identities=13% Similarity=-0.025 Sum_probs=45.1
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHc
Q 011323 376 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 438 (488)
Q Consensus 376 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 438 (488)
+|+.+..+|.+.|++++|+..++..++.. |.++..|..+..++...|++++|+..|+++.+.
T Consensus 64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 125 (170)
T d1p5qa1 64 SHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL 125 (170)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcccccchhhhhhhcc-ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 45566777777888888888887777642 335677777777788888888888888777764
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.10 E-value=1.7e-06 Score=79.72 Aligned_cols=108 Identities=9% Similarity=-0.105 Sum_probs=37.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 011323 237 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 316 (488)
Q Consensus 237 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 316 (488)
+..+...+.+.|+.+.|...+....... ...++..+...+...|++++|...|.+..+..+. +...|+.+...+..
T Consensus 123 ~~~lg~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~-~~~~~~~Lg~~~~~ 198 (497)
T d1ya0a1 123 SSQLGIISNKQTHTSAIVKPQSSSCSYI---CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPS-NGQPYNQLAILASS 198 (497)
T ss_dssp --------------------CCHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-BSHHHHHHHHHHHH
T ss_pred HHHhHHHHHhCCCHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-chHHHHHHHHHHHH
Confidence 3334444444444444444444333221 0123344444444445555555555444443222 33444444444444
Q ss_pred cCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHH
Q 011323 317 AGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 349 (488)
Q Consensus 317 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 349 (488)
.|+..+|...|.+..... +|-+.++..|...+
T Consensus 199 ~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~ 230 (497)
T d1ya0a1 199 KGDHLTTIFYYCRSIAVK-FPFPAASTNLQKAL 230 (497)
T ss_dssp TTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHH
Confidence 455555554444444432 33344444444333
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.10 E-value=7.6e-05 Score=57.23 Aligned_cols=76 Identities=13% Similarity=0.072 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHH
Q 011323 340 ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN-TITYSILLVA 418 (488)
Q Consensus 340 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~ 418 (488)
.+|+.+..+|.+.|++++|+..++..++.+ +.+...|..+..+|...|++++|+..|+...+. .|+ ......+...
T Consensus 63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~P~n~~~~~~l~~~ 139 (170)
T d1p5qa1 63 ASHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--YPNNKAAKTQLAVC 139 (170)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcccccchhhhhhhcc-ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 456778888999999999999999998876 557888999999999999999999999999874 454 4444444433
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.08 E-value=2.7e-05 Score=56.53 Aligned_cols=94 Identities=10% Similarity=0.168 Sum_probs=62.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC--------HHHHH
Q 011323 342 YSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN--------TITYS 413 (488)
Q Consensus 342 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~--------~~~~~ 413 (488)
+..+...+.+.|++++|+..|++.++.+ +.+...+..+..+|.+.|++++|++.++++++. .|+ ..+|.
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l--~~~~~~~~~~~a~~~~ 83 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEV--GRENREDYRQIAKAYA 83 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHh--CcccHHHHHHHHHHHH
Confidence 3455666777777777777777777654 445667777777777777777777777776542 111 23455
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHc
Q 011323 414 ILLVACERKDDVEVGLMLLSQAKED 438 (488)
Q Consensus 414 ~l~~~~~~~g~~~~a~~~~~~~~~~ 438 (488)
.+...+...+++++|++.|++....
T Consensus 84 ~lg~~~~~~~~~~~A~~~~~kal~~ 108 (128)
T d1elra_ 84 RIGNSYFKEEKYKDAIHFYNKSLAE 108 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 6666677777777777777776654
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.07 E-value=0.0024 Score=54.17 Aligned_cols=128 Identities=13% Similarity=0.156 Sum_probs=56.1
Q ss_pred HHHHHHhhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhH
Q 011323 66 RFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA 145 (488)
Q Consensus 66 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 145 (488)
.++..|.+.|.++.|..+|..+. -|..++..+.+.++++.|.+.+.+. -+..+|..+...+.+......
T Consensus 19 ~i~~~c~~~~lye~A~~lY~~~~-----d~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~~~l~~~~e~~l 87 (336)
T d1b89a_ 19 QVGDRCYDEKMYDAAKLLYNNVS-----NFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRL 87 (336)
T ss_dssp ----------CTTTHHHHHHHTT-----CHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHhCC-----CHHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHHHHHHhCcHHHH
Confidence 34445555555555555555432 2334445555555555555544322 134455555555555444332
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHcc
Q 011323 146 MFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQS 210 (488)
Q Consensus 146 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 210 (488)
+ .+...+...+......++..|-..|.+++...+++...... .++...++.++..|++.
T Consensus 88 a-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~-~~~~~~~~~L~~lyak~ 146 (336)
T d1b89a_ 88 A-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF 146 (336)
T ss_dssp H-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT
T ss_pred H-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCC-ccchHHHHHHHHHHHHh
Confidence 2 11112222344444455555555666666666555544321 33444555555555554
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.02 E-value=0.003 Score=53.51 Aligned_cols=145 Identities=14% Similarity=0.117 Sum_probs=90.2
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHH
Q 011323 89 NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGAL 168 (488)
Q Consensus 89 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 168 (488)
.+|..--..+...|.+.|.++.|..++..+. -|..++..+.+.++++.|.+++.+.. +..+|..+
T Consensus 11 ~~n~~d~~~i~~~c~~~~lye~A~~lY~~~~---------d~~rl~~~~v~l~~~~~avd~~~k~~------~~~~~k~~ 75 (336)
T d1b89a_ 11 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEV 75 (336)
T ss_dssp CC----------------CTTTHHHHHHHTT---------CHHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHCCCHHHHHHHHHhCC---------CHHHHHHHHHhhccHHHHHHHHHHcC------CHHHHHHH
Confidence 4566666667788889999999999987543 35567788888999999888776542 67788888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHHhcC
Q 011323 169 IDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 248 (488)
Q Consensus 169 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 248 (488)
...+.+.....-+ .+...+...+......++..|-..|.+++...+++..... -.++...++.++..|++.+
T Consensus 76 ~~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~---~~~~~~~~~~L~~lyak~~ 147 (336)
T d1b89a_ 76 CFACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL---ERAHMGMFTELAILYSKFK 147 (336)
T ss_dssp HHHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS---TTCCHHHHHHHHHHHHTTC
T ss_pred HHHHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC---CccchHHHHHHHHHHHHhC
Confidence 8888887776554 2223333456666678888999999999999999887542 1344556777888887754
Q ss_pred CHHHHHHHH
Q 011323 249 QVDRAREVY 257 (488)
Q Consensus 249 ~~~~a~~~~ 257 (488)
.++..+.+
T Consensus 148 -~~kl~e~l 155 (336)
T d1b89a_ 148 -PQKMREHL 155 (336)
T ss_dssp -HHHHHHHH
T ss_pred -hHHHHHHH
Confidence 34444433
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.02 E-value=6.9e-05 Score=54.31 Aligned_cols=96 Identities=14% Similarity=0.132 Sum_probs=67.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCC-CCC-----HHHHHHH
Q 011323 95 FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGI-EPN-----VHTYGAL 168 (488)
Q Consensus 95 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~-----~~~~~~l 168 (488)
+..+...+...|++++|++.|+...+.+ +.+...+..+..+|.+.|++++|++.++..++... .+. ..+|..+
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~l 85 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 3445667778888888888888887765 45677888888888888888888888888765321 011 2356666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC
Q 011323 169 IDGCAKAGQVAKAFGAYGIMRSK 191 (488)
Q Consensus 169 ~~~~~~~~~~~~a~~~~~~~~~~ 191 (488)
...+...+++++|+..|++....
T Consensus 86 g~~~~~~~~~~~A~~~~~kal~~ 108 (128)
T d1elra_ 86 GNSYFKEEKYKDAIHFYNKSLAE 108 (128)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhc
Confidence 66777777888888888776654
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.96 E-value=0.00016 Score=54.22 Aligned_cols=67 Identities=24% Similarity=0.196 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCH
Q 011323 340 ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT 409 (488)
Q Consensus 340 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~ 409 (488)
.+|..+..+|.+.|++++|+..++.+.+.+ +.+..+|..+..++...|++++|+..|++..+. .|+.
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l--~P~n 134 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASL--NPNN 134 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTC
T ss_pred HHHhhHHHHHHHhcccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh--CCCC
Confidence 467778888999999999999999988776 567889999999999999999999999998874 5553
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.93 E-value=0.00014 Score=55.69 Aligned_cols=62 Identities=11% Similarity=0.017 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 011323 375 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 437 (488)
Q Consensus 375 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 437 (488)
..|..+..++.+.|++++|+..+.+.++.. +.+...|..+..++.+.|++++|+..|+++.+
T Consensus 78 ~~~~nla~~~~~~~~~~~Ai~~~~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~ 139 (169)
T d1ihga1 78 SCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQE 139 (169)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccchhhhhhhhhhhhh-hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHH
Confidence 344445555555666666666666555532 22345555555666666666666666665555
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.91 E-value=4.7e-05 Score=56.55 Aligned_cols=126 Identities=11% Similarity=-0.002 Sum_probs=72.2
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 011323 35 LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQV 114 (488)
Q Consensus 35 l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 114 (488)
+-+.+.+++|++.|+...+.+ |.+...+..++.++...+++..+.+- .+.+++|+..
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~--P~~~~~~~~~g~~l~~~~~~~~~~e~---------------------~~~~~~Ai~~ 63 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSN--PLDADNLTRWGGVLLELSQFHSISDA---------------------KQMIQEAITK 63 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCHHHH---------------------HHHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhC--CcchHHHHHHHHHHHHhhhhhhhhHH---------------------HHHHHHHHHH
Confidence 345667888999999888887 77887777777777655444333221 1234566666
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCC-----------HhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 011323 115 LRLVQEAGLKADCKLYTTLITTCAKSGK-----------VDAMFEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFG 183 (488)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 183 (488)
|+...+.. |.+..+|..+..+|...|+ +++|.+.|+..++. .|+...|..-+..+ .+|.+
T Consensus 64 ~~kAl~l~-P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l--~P~~~~~~~~L~~~------~ka~~ 134 (145)
T d1zu2a1 64 FEEALLID-PKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEMT------AKAPQ 134 (145)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHH------HTHHH
T ss_pred HHHHHHhc-chhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhccccc--CCCHHHHHHHHHHH------HHHHH
Confidence 66666553 4455566666666654432 45566666666654 45544444333322 23444
Q ss_pred HHHHHHhCC
Q 011323 184 AYGIMRSKN 192 (488)
Q Consensus 184 ~~~~~~~~~ 192 (488)
++.+..+.|
T Consensus 135 ~~~e~~k~~ 143 (145)
T d1zu2a1 135 LHAEAYKQG 143 (145)
T ss_dssp HHHHHHHSS
T ss_pred HHHHHHHHh
Confidence 444444443
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.90 E-value=7.8e-06 Score=75.27 Aligned_cols=110 Identities=10% Similarity=-0.120 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCC-CcchHHHH
Q 011323 162 VHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDP-DHITIGAL 240 (488)
Q Consensus 162 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~~l 240 (488)
...+..+...+.+.|+.+.|...+....... ...++..+...+...|++++|...|++.... .| +...|+.+
T Consensus 120 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l----~P~~~~~~~~L 192 (497)
T d1ya0a1 120 RVKSSQLGIISNKQTHTSAIVKPQSSSCSYI---CQHCLVHLGDIARYRNQTSQAESYYRHAAQL----VPSNGQPYNQL 192 (497)
T ss_dssp -----------------------CCHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTBSHHHHHH
T ss_pred HHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHcccHHHHHHHHHHHHHH----CCCchHHHHHH
Confidence 3344444455555555555555444433211 1133444455555555555555555555442 22 23355555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 011323 241 MKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCC 279 (488)
Q Consensus 241 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 279 (488)
...+...|+..+|...|.+..... +|-+.++..|...+
T Consensus 193 g~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~ 230 (497)
T d1ya0a1 193 AILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKAL 230 (497)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHH
Confidence 555555555555555555555443 34444555544444
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.88 E-value=6.1e-06 Score=68.37 Aligned_cols=123 Identities=10% Similarity=0.089 Sum_probs=74.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHhcCCh
Q 011323 32 YNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDS 108 (488)
Q Consensus 32 ~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~ 108 (488)
|...+++|++++|++.+++.++.. |.+......++.++...|++++|.+.|+... +.+...+..+...+...+..
T Consensus 3 ~~~aL~~G~l~eAl~~l~~al~~~--P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~ 80 (264)
T d1zbpa1 3 WKNALSEGQLQQALELLIEAIKAS--PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQAR 80 (264)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHTC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcccc
Confidence 456778899999999999999887 7888888888888888888888888887764 22334444444443333222
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHc
Q 011323 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNA 156 (488)
Q Consensus 109 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 156 (488)
+++..-...-...+-+++...+......+...|+.++|.+.++.+.+.
T Consensus 81 ~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 81 KDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp HHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 222111111000111122233444455566677777777777776654
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.87 E-value=0.00023 Score=54.34 Aligned_cols=60 Identities=8% Similarity=0.054 Sum_probs=33.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 011323 342 YSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 402 (488)
Q Consensus 342 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 402 (488)
|..+..+|.+.|++++|+..++...+.+ +.+...|..+..++...|++++|...|+++++
T Consensus 67 ~~Nla~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~ 126 (168)
T d1kt1a1 67 FLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLE 126 (168)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHhhhcccchhhhhhhhhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4444555555555555555555555443 34455555555555555555555555555554
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.87 E-value=7.1e-05 Score=57.73 Aligned_cols=122 Identities=12% Similarity=0.067 Sum_probs=65.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHhcCChhH
Q 011323 31 SYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEG 110 (488)
Q Consensus 31 ~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 110 (488)
....+...|++++|.+.|.+.+..-..+.-.... .+.+ +...-..+.+.....+..+...+...|++++
T Consensus 17 ~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~---------~~~w--~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~ 85 (179)
T d2ff4a2 17 AGVHAAAAGRFEQASRHLSAALREWRGPVLDDLR---------DFQF--VEPFATALVEDKVLAHTAKAEAEIACGRASA 85 (179)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGT---------TSTT--HHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcccccccCc---------chHH--HHHHHHHHHHHHHHHHHHHHHHHHHCCCchH
Confidence 3345568899999999999888652101000000 0000 0000000001123445556666666667777
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHH-----cCCCCCHHH
Q 011323 111 AFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVN-----AGIEPNVHT 164 (488)
Q Consensus 111 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~ 164 (488)
|+..++.+.+.. +-+...|..++.++...|+..+|++.|+++.+ .|+.|+..+
T Consensus 86 Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 86 VIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 776666666554 44666666666666666766666666666532 456665543
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.82 E-value=0.0002 Score=54.79 Aligned_cols=111 Identities=11% Similarity=0.085 Sum_probs=86.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC--------------CC-CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 011323 306 FLSALIDFAGHAGKVEAAFEILQEAKNQ--------------GI-SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL 370 (488)
Q Consensus 306 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~--------------~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 370 (488)
.+......+...|++..|+..|.++.+. .. +.....+..+..++.+.|++++|+..++.+++..
T Consensus 29 ~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~- 107 (169)
T d1ihga1 29 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID- 107 (169)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhh-
Confidence 3555667788999999999999887531 01 1234567778889999999999999999999876
Q ss_pred CCCHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHH
Q 011323 371 KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP-NTITYSILLVAC 419 (488)
Q Consensus 371 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~ 419 (488)
+.+...|..+..+|...|++++|+..|++..+. .| +......+....
T Consensus 108 p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l--~p~n~~~~~~l~~~~ 155 (169)
T d1ihga1 108 PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI--APEDKAIQAELLKVK 155 (169)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 567889999999999999999999999999984 44 445555544433
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.81 E-value=0.00054 Score=52.60 Aligned_cols=59 Identities=12% Similarity=0.018 Sum_probs=32.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHH
Q 011323 341 SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM 400 (488)
Q Consensus 341 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 400 (488)
.+..+..++...|++++|...++++.+.. +-+...|..++.+|.+.|+.++|++.|+++
T Consensus 69 a~~~la~~~~~~g~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~ 127 (179)
T d2ff4a2 69 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRV 127 (179)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCchHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 34445555555555555555555555443 344555555555555555555555555554
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.79 E-value=0.001 Score=50.49 Aligned_cols=77 Identities=17% Similarity=0.046 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 011323 375 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 454 (488)
Q Consensus 375 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 454 (488)
.+|..+..+|.+.|++++|+..++..++.. +.+...|..+..++...|++++|...|+++.+ +.|+.......+..+
T Consensus 65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~--l~P~n~~~~~~l~~~ 141 (168)
T d1kt1a1 65 AAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLE--VNPQNKAARLQIFMC 141 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SCTTCHHHHHHHHHH
T ss_pred HHHHhHHHHHHHhhhcccchhhhhhhhhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 356667888999999999999999998753 55688999999999999999999999999998 446555444444443
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.66 E-value=0.00011 Score=54.43 Aligned_cols=67 Identities=10% Similarity=-0.002 Sum_probs=30.7
Q ss_pred cCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 011323 317 AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA----------KNWQKALELYEHMKSIKLKPTVSTMNALITALC 385 (488)
Q Consensus 317 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 385 (488)
.+.+++|...|+...+.. +.++..+..+..+|... +.+++|+..|++..+.+ +.+..+|..+..+|.
T Consensus 10 ~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~-P~~~~a~~~lG~~y~ 86 (145)
T d1zu2a1 10 ILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYT 86 (145)
T ss_dssp HHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc-chhhHHHhhHHHHHH
Confidence 344555555555555543 33444444444444322 22344555555554443 334444444444443
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.61 E-value=6.1e-05 Score=62.17 Aligned_cols=53 Identities=19% Similarity=0.174 Sum_probs=31.4
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011323 315 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 368 (488)
Q Consensus 315 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 368 (488)
.+.|++++|+..+++.++.. +.+...+..+...++..|++++|.+.++...+.
T Consensus 7 L~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l 59 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL 59 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 34566666666666666554 345556666666666666666666666665544
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.06 E-value=0.0053 Score=45.68 Aligned_cols=92 Identities=11% Similarity=0.010 Sum_probs=60.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCC-CC----------CHHHHHHHHHHHHcCCChhHHHHHHHHHHhC-----CCCCC-
Q 011323 346 MGACSNAKNWQKALELYEHMKSIKL-KP----------TVSTMNALITALCDGDQLPKTMEVLSDMKSL-----GLCPN- 408 (488)
Q Consensus 346 ~~~~~~~g~~~~a~~~~~~~~~~~~-~~----------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~p~- 408 (488)
...+...|++++|+..|++.++... .| ...+|+.+..+|.+.|++++|+..+++.++. ...++
T Consensus 16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~ 95 (156)
T d2hr2a1 16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE 95 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence 3445566777777777777654210 01 1346777778888888888888887776531 11222
Q ss_pred ----HHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 011323 409 ----TITYSILLVACERKDDVEVGLMLLSQAKE 437 (488)
Q Consensus 409 ----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 437 (488)
...+..+..+|...|++++|+..|+++.+
T Consensus 96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 22466678889999999999999988765
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.02 E-value=0.01 Score=44.07 Aligned_cols=90 Identities=11% Similarity=0.021 Sum_probs=46.4
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCC-C----------CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHc-----CCCCC--
Q 011323 100 SVCASSKDSEGAFQVLRLVQEAGLK-A----------DCKLYTTLITTCAKSGKVDAMFEVFHEMVNA-----GIEPN-- 161 (488)
Q Consensus 100 ~~~~~~~~~~~a~~~~~~~~~~~~~-~----------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~-- 161 (488)
..+...|++++|++.|++..+.... | ....|+.+..+|...|++++|.+.+++.++. ...++
T Consensus 17 ~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~ 96 (156)
T d2hr2a1 17 QRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEG 96 (156)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccccccccccc
Confidence 3445566777777777666542110 1 1235556666666666666666666655431 01111
Q ss_pred ---HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011323 162 ---VHTYGALIDGCAKAGQVAKAFGAYGIMR 189 (488)
Q Consensus 162 ---~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 189 (488)
...++.+..+|...|++++|+..|++..
T Consensus 97 ~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al 127 (156)
T d2hr2a1 97 KLWISAVYSRALALDGLGRGAEAMPEFKKVV 127 (156)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred chhHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 1134445555555556555555555543
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.64 E-value=0.0093 Score=39.77 Aligned_cols=60 Identities=10% Similarity=0.026 Sum_probs=31.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcC-----CCC-CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHc
Q 011323 97 MLMSVCASSKDSEGAFQVLRLVQEAG-----LKA-DCKLYTTLITTCAKSGKVDAMFEVFHEMVNA 156 (488)
Q Consensus 97 ~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 156 (488)
.+...+.+.|++++|+..|++..+.. ..+ ...++..+..++.+.|++++|++.+++.++.
T Consensus 10 ~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l 75 (95)
T d1tjca_ 10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (95)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence 44555555666666666655544321 011 1334555556666666666666666665554
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.62 E-value=0.013 Score=39.03 Aligned_cols=27 Identities=22% Similarity=0.127 Sum_probs=11.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011323 341 SYSSLMGACSNAKNWQKALELYEHMKS 367 (488)
Q Consensus 341 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 367 (488)
+++.+..++.+.|++++|...++++.+
T Consensus 48 ~l~~Lg~~~~~~g~~~~A~~~y~~aL~ 74 (95)
T d1tjca_ 48 VLDYLSYAVYQQGDLDKALLLTKKLLE 74 (95)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHhcCChHHHHHHHHHHHH
Confidence 334444444444444444444444433
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.11 E-value=0.13 Score=36.44 Aligned_cols=81 Identities=15% Similarity=0.028 Sum_probs=39.3
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----CCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhh----cCC
Q 011323 353 KNWQKALELYEHMKSIKLKPTVSTMNALITALCD----GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER----KDD 424 (488)
Q Consensus 353 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~ 424 (488)
.+.++|.+.+++..+.| ++.....|...|.. ..+.++|.++|++..+.| ++.....|...|.. ..+
T Consensus 37 ~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d 110 (133)
T d1klxa_ 37 INKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKN 110 (133)
T ss_dssp SCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC
T ss_pred cCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC---cchHHHHHHHHHHcCCccCCC
Confidence 44555555555555443 23333333333332 344556666666665544 22233333333333 345
Q ss_pred HHHHHHHHHHHHHcC
Q 011323 425 VEVGLMLLSQAKEDG 439 (488)
Q Consensus 425 ~~~a~~~~~~~~~~~ 439 (488)
.++|.++|++..+.|
T Consensus 111 ~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 111 EKQAVKTFEKACRLG 125 (133)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHCC
Confidence 666666666665554
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.05 E-value=0.14 Score=36.29 Aligned_cols=81 Identities=15% Similarity=0.073 Sum_probs=42.4
Q ss_pred CCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----CCC
Q 011323 318 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSN----AKNWQKALELYEHMKSIKLKPTVSTMNALITALCD----GDQ 389 (488)
Q Consensus 318 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~ 389 (488)
.+.++|...+++..+.| ++.....|...|.. ..+.++|.++|++..+.+ ++.....|...|.. ..+
T Consensus 37 ~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d 110 (133)
T d1klxa_ 37 INKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKN 110 (133)
T ss_dssp SCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC
T ss_pred cCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC---cchHHHHHHHHHHcCCccCCC
Confidence 44555666666655554 33344444444433 345666666666666544 23333344444443 345
Q ss_pred hhHHHHHHHHHHhCC
Q 011323 390 LPKTMEVLSDMKSLG 404 (488)
Q Consensus 390 ~~~a~~~~~~~~~~~ 404 (488)
.++|.+++++..+.|
T Consensus 111 ~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 111 EKQAVKTFEKACRLG 125 (133)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHCC
Confidence 666666666666554
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=95.53 E-value=0.2 Score=34.22 Aligned_cols=68 Identities=16% Similarity=0.050 Sum_probs=52.3
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCC
Q 011323 373 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVI 441 (488)
Q Consensus 373 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 441 (488)
+....+..+..+...|.-+.-.++++.+.+.+ .|++.....+..+|.+.|+..++-+++.++-+.|+.
T Consensus 85 ~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 85 LNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 33455666777888888888888888877654 788888888888999999998888888888877754
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.16 E-value=0.17 Score=34.79 Aligned_cols=80 Identities=11% Similarity=0.074 Sum_probs=54.0
Q ss_pred CCCHHHHHHHHHHHHcCCC---hhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHH
Q 011323 371 KPTVSTMNALITALCDGDQ---LPKTMEVLSDMKSLGLCPNT-ITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVM 446 (488)
Q Consensus 371 ~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 446 (488)
.++..+-.....+++++.+ .++++.+++++.+.+ +.+. ..+-.|.-+|.+.|++++|.++++.+++ +.|+..-
T Consensus 32 ~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~--ieP~n~q 108 (124)
T d2pqrb1 32 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNKQ 108 (124)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHH
T ss_pred CCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc--cCCCcHH
Confidence 4556666666777776544 457888888877642 2233 4666777888888888888888888887 4566655
Q ss_pred HHHHHHH
Q 011323 447 FKCIIGM 453 (488)
Q Consensus 447 ~~~li~~ 453 (488)
...+...
T Consensus 109 A~~L~~~ 115 (124)
T d2pqrb1 109 VGALKSM 115 (124)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5544444
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=94.61 E-value=0.39 Score=32.76 Aligned_cols=63 Identities=17% Similarity=0.140 Sum_probs=31.8
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 011323 272 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 335 (488)
Q Consensus 272 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 335 (488)
+...++...++|.-+...++++.+.+. -.|++...-.+..+|.+.|...++-+++.+.-+.|.
T Consensus 89 vdlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~ 151 (161)
T d1wy6a1 89 VNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 151 (161)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhH
Confidence 334444455555555555555554442 234455555555555555555555555555555553
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=94.60 E-value=1.3 Score=38.73 Aligned_cols=310 Identities=10% Similarity=0.043 Sum_probs=157.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHhhhHHHHHHHHHhhhCCC-C-CHHHHHHHHHHHHhcCC
Q 011323 30 HSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN-P-TLSTFNMLMSVCASSKD 107 (488)
Q Consensus 30 ~~~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~-~~~~~~~l~~~~~~~~~ 107 (488)
.....++++|+..++.++...+.. - |--+.+...-+.........++...+++..+. | ........+..+.+.++
T Consensus 11 ~~a~~a~~~~~~~~~~~~~~~L~d-y--pL~pYl~~~~l~~~~~~~~~~~i~~Fl~~~p~~P~~~~lr~~~l~~L~~~~~ 87 (450)
T d1qsaa1 11 AQIKQAWDNRQMDVVEQMMPGLKD-Y--PLYPYLEYRQITDDLMNQPAVTVTNFVRANPTLPPARTLQSRFVNELARRED 87 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHSGGGTT-S--TTHHHHHHHHHHHTGGGCCHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHCCCHHHHHHHHhhhcC-C--CCHHHHHHHHHHhccccCCHHHHHHHHHHCCCChhHHHHHHHHHHHHHhccC
Confidence 344556677888877777776632 1 32222221111222223345566666666552 2 11222334556666676
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-------------
Q 011323 108 SEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEVFHEMVNAGIEPNVHTYGALIDGCAK------------- 174 (488)
Q Consensus 108 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~------------- 174 (488)
++..+..+. ..+.+...-.....+....|+.++|.+.+..+=..| ......+..+...+.+
T Consensus 88 w~~~~~~~~-----~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~~~lt~~~~~~R~ 161 (450)
T d1qsaa1 88 WRGLLAFSP-----EKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASGKQDPLAYLERI 161 (450)
T ss_dssp HHHHHHHCC-----SCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTTCSCHHHHHHHH
T ss_pred HHHHHHhcc-----CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCCchHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 655443321 123445444456666667777777766665554433 1222333333433333
Q ss_pred -----cCCHHHHHHHHHHHHhCCCCCC-HhHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCCCcchHHHHHHHHH--h
Q 011323 175 -----AGQVAKAFGAYGIMRSKNVKPD-RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA--N 246 (488)
Q Consensus 175 -----~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~ 246 (488)
.|++..|..+...+ +++ .......+.....-..+ ....... .++......+..++. .
T Consensus 162 ~~~l~~~~~~~a~~l~~~l-----~~~~~~~~~a~~~l~~~p~~~---~~~~~~~-------~~~~~~~~~~~~~l~rla 226 (450)
T d1qsaa1 162 RLAMKAGNTGLVTVLAGQM-----PADYQTIASAIISLANNPNTV---LTFARTT-------GATDFTRQMAAVAFASVA 226 (450)
T ss_dssp HHHHHTTCHHHHHHHHHTC-----CGGGHHHHHHHHHHHHCGGGH---HHHHHHS-------CCCHHHHHHHHHHHHHHH
T ss_pred HHHHHcCChhhHHHHHhhC-----ChhHHHHHHHHHHHHhChHhH---HHHHhcC-------CCChhhhHHHHHHHHHHh
Confidence 33444333333221 111 12222233222221111 1111111 112122222222222 2
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHHHH----HHHHHHHccCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 011323 247 AGQVDRAREVYKMIHKYNIKGTPEVYT----IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA 322 (488)
Q Consensus 247 ~~~~~~a~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 322 (488)
..+.+.+...+....... ..+..-.. .+.......+..+.+...+......+. +.......+......+++..
T Consensus 227 ~~d~~~a~~~l~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~w~~~~al~~~~~~~ 303 (450)
T d1qsaa1 227 RQDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQ--STSLIERRVRMALGTGDRRG 303 (450)
T ss_dssp HHCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCC--CHHHHHHHHHHHHHHTCHHH
T ss_pred ccChhHHHHHHHhhhhcc-cccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhccccc--chHHHHHHHHHHHHcCChHH
Confidence 357788888888776654 22332222 222333445667778787777666543 44555556666677889999
Q ss_pred HHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011323 323 AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 367 (488)
Q Consensus 323 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 367 (488)
+...+..+... ........--+..++...|+.+.|...|..+..
T Consensus 304 ~~~~~~~l~~~-~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~ 347 (450)
T d1qsaa1 304 LNTWLARLPME-AKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (450)
T ss_dssp HHHHHHHSCTT-GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHhcCcc-cccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc
Confidence 88888877543 233355556677888899999999999988764
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.23 E-value=0.63 Score=31.90 Aligned_cols=71 Identities=6% Similarity=-0.033 Sum_probs=43.4
Q ss_pred CccHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCH
Q 011323 336 SVGIISYSSLMGACSNAK---NWQKALELYEHMKSIKLKPT-VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT 409 (488)
Q Consensus 336 ~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~ 409 (488)
.+++.+-.....+++++. +.++++.+++++.+.+ +.+ ...+-.|.-+|.+.|++++|.+.++.+++ +.|+.
T Consensus 32 ~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~--ieP~n 106 (124)
T d2pqrb1 32 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNN 106 (124)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTC
T ss_pred CCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc--cCCCc
Confidence 345555555555665544 3456777777776543 223 24555666777777888888888777776 34553
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=91.75 E-value=1 Score=29.04 Aligned_cols=65 Identities=17% Similarity=0.262 Sum_probs=45.1
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 011323 389 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 454 (488)
Q Consensus 389 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 454 (488)
+.-++.+-+..+....+.|++....+.+++|.+.+++.-|.++++-.+.. ..++...|..++.-+
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K-~~~~k~~y~yilqel 85 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQEL 85 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCcHHHHHHHHHHH
Confidence 34456666666666667788888888888888888888888888777654 223345677666543
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=90.31 E-value=1.4 Score=28.30 Aligned_cols=48 Identities=13% Similarity=0.126 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHh
Q 011323 355 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 402 (488)
Q Consensus 355 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 402 (488)
.-++.+-++.+....+.|++.+..+.+++|-+.+++.-|+++++..+.
T Consensus 22 ~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~ 69 (105)
T d1v54e_ 22 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 69 (105)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 334455555555555566666666666666666666666666665553
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=87.44 E-value=8.2 Score=33.35 Aligned_cols=372 Identities=7% Similarity=-0.033 Sum_probs=199.2
Q ss_pred HHhhhHHHHHHHHHhhhCCCCCHHHHHHHHHHHHh--cCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHhHH
Q 011323 70 VCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCAS--SKDSEGAFQVLRLVQEAGLKA-DCKLYTTLITTCAKSGKVDAM 146 (488)
Q Consensus 70 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a 146 (488)
-....|+..++.++...+..--...|-..-..-.. .....+... .+.+..-.| ....-...+..+.+.+++...
T Consensus 15 ~a~~~~~~~~~~~~~~~L~dypL~pYl~~~~l~~~~~~~~~~~i~~---Fl~~~p~~P~~~~lr~~~l~~L~~~~~w~~~ 91 (450)
T d1qsaa1 15 QAWDNRQMDVVEQMMPGLKDYPLYPYLEYRQITDDLMNQPAVTVTN---FVRANPTLPPARTLQSRFVNELARREDWRGL 91 (450)
T ss_dssp HHHHTTCHHHHHHHSGGGTTSTTHHHHHHHHHHHTGGGCCHHHHHH---HHHHCTTCHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHCCCHHHHHHHHhhhcCCCCHHHHHHHHHHhccccCCHHHHHH---HHHHCCCChhHHHHHHHHHHHHHhccCHHHH
Confidence 34556888888888888753113334333222222 233444333 333322122 122334456677888888765
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhHHHHHHHHHHccCC--------------
Q 011323 147 FEVFHEMVNAGIEPNVHTYGALIDGCAKAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA-------------- 212 (488)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~-------------- 212 (488)
.+.+. ..+.+...-.....+....|+.+.|...+..+-..| ...+.....+...+...|.
T Consensus 92 ~~~~~-----~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~~~lt~~~~~~R~~~~l 165 (450)
T d1qsaa1 92 LAFSP-----EKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASGKQDPLAYLERIRLAM 165 (450)
T ss_dssp HHHCC-----SCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHhcc-----CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 54332 224566666778888889999999988888776655 2233444445544444333
Q ss_pred ----HHHHHHHHHHHhhCCCCCCCCc-chHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc--cCCh
Q 011323 213 ----VDRAFDVLAEMNAEVHPVDPDH-ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ--TGDW 285 (488)
Q Consensus 213 ----~~~a~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~ 285 (488)
...|..++..+ .++. ......+.... +...+... ... ...+......+..++.+ ..+.
T Consensus 166 ~~~~~~~a~~l~~~l-------~~~~~~~~~a~~~l~~---~p~~~~~~---~~~--~~~~~~~~~~~~~~l~rla~~d~ 230 (450)
T d1qsaa1 166 KAGNTGLVTVLAGQM-------PADYQTIASAIISLAN---NPNTVLTF---ART--TGATDFTRQMAAVAFASVARQDA 230 (450)
T ss_dssp HTTCHHHHHHHHHTC-------CGGGHHHHHHHHHHHH---CGGGHHHH---HHH--SCCCHHHHHHHHHHHHHHHHHCH
T ss_pred HcCChhhHHHHHhhC-------ChhHHHHHHHHHHHHh---ChHhHHHH---Hhc--CCCChhhhHHHHHHHHHHhccCh
Confidence 33333332221 1111 11222222221 11111111 111 12333333333333333 3578
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHH----HHHHhcCCHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHH
Q 011323 286 EFACSVYDDMTKKGVIPDEVFLSALI----DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 361 (488)
Q Consensus 286 ~~a~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 361 (488)
+.+...+......... +......+- ......+..+.+...+......+ .+.......+......+++..+...
T Consensus 231 ~~a~~~l~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~w~~~~al~~~~~~~~~~~ 307 (450)
T d1qsaa1 231 ENARLMIPSLAQAQQL-NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLNTW 307 (450)
T ss_dssp HHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred hHHHHHHHhhhhcccc-cHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccc--cchHHHHHHHHHHHHcCChHHHHHH
Confidence 8888888887764333 222222222 22234566788888887776654 3445555566667778999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHHHh------------CCCCCC----------HHH-----HHH
Q 011323 362 YEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS------------LGLCPN----------TIT-----YSI 414 (488)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------------~~~~p~----------~~~-----~~~ 414 (488)
+..+.... .....-.-=+.+++...|+.++|...|..+.. .|.+++ ... -..
T Consensus 308 ~~~l~~~~-~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~~~fYG~LAa~~Lg~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (450)
T d1qsaa1 308 LARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAAQRIGEEYELKIDKAPQNVDSALTQGPEMA 386 (450)
T ss_dssp HHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSHHHHHHHHHTTCCCCCCCCCCCSCCCCHHHHSHHHH
T ss_pred HHhcCccc-ccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcCCChHHHHHHHHcCCCCCCCcCCCCccHHHhhhcChHHH
Confidence 98875422 11222223456888899999999999988642 122111 000 112
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhh--cHHHHHHHHHHhhhcc
Q 011323 415 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHVLSFN 472 (488)
Q Consensus 415 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~--~~~~a~~~~~~~~~~~ 472 (488)
-+..+...|....|...|..+... ..++ ....+.....+ .++.|.....+...++
T Consensus 387 ra~~L~~~g~~~~A~~e~~~l~~~-~~~~--~~~~la~lA~~~g~~~~aI~a~~~~~~~d 443 (450)
T d1qsaa1 387 RVRELMYWNLDNTARSEWANLVKS-KSKT--EQAQLARYAFNNQWWDLSVQATIAGKLWD 443 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTT-CCHH--HHHHHHHHHHHTTCHHHHHHHHHHTTCTT
T ss_pred HHHHHHHcCCchHHHHHHHHHHhC-CCHH--HHHHHHHHHHHCCChhHHHHHHHHHHccC
Confidence 245667889999999999887753 3333 33334443333 6777777766655443
|