Citrus Sinensis ID: 011328

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------49
Protein Sequence
MLWCWIDCFVCFSLLKPMDPMFFIIQLQLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVEEDEDEPLPPGDATQAGFGFAGNGLPVPSGGFNFG
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHcccccccHHHHHHcccccHHHHHHHHccccHHHHHHHHHHHHHHHHcccccHHHHHHHcccHHHHHHHHcccccHHHHHHHHHHHHHHHcccccHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHccccHHHHHHHHHccccHHHHHHHccccHHHHHHHHHHHHHHHHcccccccHHHHcccHHHHHHHcccccHHHHHHHHHHHHHHHccccHHHHHHHHcccHHHHHHHcccccccHHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHccHHcHHHHHHHHHHHHHcccHHHHHHHHHHccHHHHHHHHHcccHHHHHHHHHHHHHHHccccHHHHHHHHHcccHHHcccccccccHHHHHHHHHHHHHHHHccHHHHHHcccccHHHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEHHcccccccccccccccccHHHHHccHHHHHHHHccccHHHHHHHHHHHHHHHcccccccHHHHHHcccHHHHHHcccccccHHHHHHHHHHHHHHccccHHHHHHHHHccHHHHHHHHHHHccHHHHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccHHHHHHHHHccHHHHHHHHcccccHHHHHHHHHHHHHHccccHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHcccccHHHHHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHccHHHHHHHHHHcccHHHHHHHHHHHHHHccccccccccccccccccccEEccccccccccccccc
Coil and Loop (DISEMBL)
mlwcwidcfvcfsllkpmdpMFFIIQLQLESLPAMVAgvwsddrniqLDATTQFRKLLSiersppineviqsgvvprfieflsrddfpqLQFEAAWALTniasgtsentrvvidhgAVPIFVRLlssptddvREQAVWALGnvagdspkcrdlvlsngalmPLLAQFNEHAKLSMLRNATWTlsnfcrgkpqplfeqtrpalpaLERLihsnddevLTDACWALsylsdgtnDKIQAVIEAGVCPRLvellrhpspsvlipalrtvgnivtgddmqtqciinhqalPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISnatsggsneQIKFLVSqgcikplcdllncpdpriVTVCLEGLENILKAGEAeknmgntggvNLFAQAIDDAEGLEKIEnlqshdntEIYEKAVKILETYwveededeplppgdatqagfgfagnglpvpsggfnfg
Flexible Loop (DISEMBL)
MLWCWIDCFVCFSLLKPMDPMFFIIQLQLESLPAMVAGVWSDDRNIQLDATTQFRKLlsiersppineviqsGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWAlgnvagdspKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLrhpspsvlipALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIEnlqshdnteiYEKAVKILETYWVEEDEDEPLPPGDATQAGFGFAGNGLPVPSGGFNFG
Low Complexity Region (SEG)
MLWCWIDCFVCFSLLKPMDPMFFIIQLQLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNqiqaiieagiigPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVeededeplppgdATQAGFGFAGNGLPVPSGGFNFG
Disordered region (IsUnstruct)
*LWCWIDCFVCFSLLKPMDPMFFIIQLQLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVE**********************************
Disordered Region (DISOPRED)
MLWCWIDCFVCFSLLKPMDPMFFIIQLQLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVEEDEDEPLP**********************FNF*
Disordered Region (DISEMBL)
MLWCWIDCFVCFSLLKPMDPMFFIIQLQLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVEEDEDEPLPPGDATQAGFGFAGNGLPVPSGGFNFG
Disordered Region (DISPRO)
MLWCWIDCFVCFSLLKPMD*MFFIIQLQLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVEE*****LPP*************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLWCWIDCFVCFSLLKPMDPMFFIIQLQLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVEEDEDEPLPPGDATQAGFGFAGNGLPVPSGGFNFG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	488	2.2.26 [Sep-21-2011]
O22478	527	Importin subunit alpha OS	N/A	no	0.936	0.867	0.822	0.0
Q96321	532	Importin subunit alpha-1	yes	no	0.948	0.870	0.8	0.0
Q9SLX0	534	Importin subunit alpha-1b	yes	no	0.946	0.865	0.806	0.0
Q71VM4	526	Importin subunit alpha-1a	no	no	0.887	0.823	0.852	0.0
O04294	531	Importin subunit alpha-2	no	no	0.934	0.858	0.755	0.0
Q76P29	516	Importin subunit alpha-B	yes	no	0.907	0.858	0.626	1e-158
O35345	536	Importin subunit alpha-7	yes	no	0.895	0.815	0.608	1e-145
Q0V7M0	536	Importin subunit alpha-7	yes	no	0.895	0.815	0.608	1e-144
Q5RBV0	536	Importin subunit alpha-7	yes	no	0.895	0.815	0.606	1e-144
O60684	536	Importin subunit alpha-7	yes	no	0.895	0.815	0.606	1e-144

>sp|O22478|IMA_SOLLC Importin subunit alpha OS=Solanum lycopersicum PE=2 SV=2

 Score =  780 bits (2014), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/461 (82%), Positives = 420/461 (91%), Gaps = 4/461 (0%)

Query: 28  QLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDF 87
           +LE+LP ++AGVWSDD ++QL+ TTQFRKLLSIER+PPI EVIQSGVVPRF+EFL+RDD+
Sbjct: 71  KLETLPELIAGVWSDDSSLQLECTTQFRKLLSIERNPPIEEVIQSGVVPRFVEFLARDDY 130

Query: 88  PQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDS 147
           PQLQFEAAWALTNIASGTSENT+VVID+G+VPIF+RLLSSP+DDVREQAVWALGN+AGDS
Sbjct: 131 PQLQFEAAWALTNIASGTSENTKVVIDYGSVPIFIRLLSSPSDDVREQAVWALGNIAGDS 190

Query: 148 PKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALER 207
           PK RDLVL +GAL+ LLAQFNE AKLSMLRNATWTLSNFCRGKPQPLFEQT+ ALP L R
Sbjct: 191 PKYRDLVLGHGALVALLAQFNEQAKLSMLRNATWTLSNFCRGKPQPLFEQTKAALPTLGR 250

Query: 208 LIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVG 267
           LIHSND+EVLTDACWALSYLSDGTNDKIQAVIEAGVC RLVELL H SPSVLIPALRTVG
Sbjct: 251 LIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCSRLVELLLHSSPSVLIPALRTVG 310

Query: 268 NIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAG 327
           NIVTGDD+QTQ +I+H ALPCL++LLTQNYKKSIKKEACWTISNITAGN NQIQ +IEAG
Sbjct: 311 NIVTGDDIQTQVMIDHHALPCLVNLLTQNYKKSIKKEACWTISNITAGNRNQIQIVIEAG 370

Query: 328 IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIV 387
           II PLV LL NAEFEIKKEAAWAISNATSGG+++QIKFLVSQGCIKPLCDLL CPDPRIV
Sbjct: 371 IIAPLVYLLQNAEFEIKKEAAWAISNATSGGNHDQIKFLVSQGCIKPLCDLLVCPDPRIV 430

Query: 388 TVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKI 447
           TVCLEGLENILK GEA+K++GNT GVN++AQ ID+AEGLEKIENLQSHDNTEIYEKAVKI
Sbjct: 431 TVCLEGLENILKIGEADKDLGNTEGVNVYAQLIDEAEGLEKIENLQSHDNTEIYEKAVKI 490

Query: 448 LETYWVEEDEDEPLPPGDATQAGFGFAGNGLPVPSGGFNFG 488
           LETYW+EE ED P+      +  F F G  + +PSGGFNF 
Sbjct: 491 LETYWLEE-EDVPV---SLNEDQFEFGGADISLPSGGFNFS 527

Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope. Seems to act as a cytosolic receptor for both simple and bipartite NLS motifs.
Solanum lycopersicum (taxid: 4081)

>sp|Q96321|IMA1_ARATH Importin subunit alpha-1 OS=Arabidopsis thaliana GN=KAP1 PE=1 SV=2

 Score =  774 bits (1998), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/465 (80%), Positives = 420/465 (90%), Gaps = 2/465 (0%)

Query: 25  IQLQLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSR 84
           +  +L+SL  MVAGVWSDD  +QL++TTQFRKLLSIERSPPI EVI +GVVPRF+EFL +
Sbjct: 67  VDKKLDSLKDMVAGVWSDDPALQLESTTQFRKLLSIERSPPIEEVISAGVVPRFVEFLKK 126

Query: 85  DDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVA 144
           +D+P +QFEAAWALTNIASGTS++T+VVIDH AVPIFV+LL+SP+DDVREQAVWALGNVA
Sbjct: 127 EDYPAIQFEAAWALTNIASGTSDHTKVVIDHNAVPIFVQLLASPSDDVREQAVWALGNVA 186

Query: 145 GDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPA 204
           GDSP+CRDLVL  GAL+PLL Q NEHAKLSMLRNATWTLSNFCRGKPQP F+Q +PALPA
Sbjct: 187 GDSPRCRDLVLGCGALLPLLNQLNEHAKLSMLRNATWTLSNFCRGKPQPHFDQVKPALPA 246

Query: 205 LERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALR 264
           LERLIHS+D+EVLTDACWALSYLSDGTNDKIQ VI+AGV P+LVELL H SPSVLIPALR
Sbjct: 247 LERLIHSDDEEVLTDACWALSYLSDGTNDKIQTVIQAGVVPKLVELLLHHSPSVLIPALR 306

Query: 265 TVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAII 324
           TVGNIVTGDD+QTQC+IN  ALPCL +LLTQN+KKSIKKEACWTISNITAGN +QIQ ++
Sbjct: 307 TVGNIVTGDDIQTQCVINSGALPCLANLLTQNHKKSIKKEACWTISNITAGNKDQIQTVV 366

Query: 325 EAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDP 384
           EA +I PLV+LL NAEF+IKKEAAWAISNATSGGS++QIK+LV QGCIKPLCDLL CPDP
Sbjct: 367 EANLISPLVSLLQNAEFDIKKEAAWAISNATSGGSHDQIKYLVEQGCIKPLCDLLVCPDP 426

Query: 385 RIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKA 444
           RI+TVCLEGLENILK GEAEKN+G+TG +N +AQ IDDAEGLEKIENLQSHDN EIYEKA
Sbjct: 427 RIITVCLEGLENILKVGEAEKNLGHTGDMNYYAQLIDDAEGLEKIENLQSHDNNEIYEKA 486

Query: 445 VKILETYWVEEDEDEP-LPPG-DATQAGFGFAGNGLPVPSGGFNF 487
           VKILETYW+EE++DE   PPG D +QAGF F GN  PVPSGGFNF
Sbjct: 487 VKILETYWLEEEDDETQQPPGVDGSQAGFQFGGNQAPVPSGGFNF 531

Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope. Seems to act as a cytosolic receptor for both simple and bipartite NLS motifs (By similarity). Cellular receptor for the nuclear import of the virD2 protein of Agrobacterium.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SLX0|IMA1B_ORYSJ Importin subunit alpha-1b OS=Oryza sativa subsp. japonica GN=Os05g0155500 PE=1 SV=2

 Score =  769 bits (1986), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/464 (80%), Positives = 413/464 (89%), Gaps = 2/464 (0%)

Query: 25  IQLQLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSR 84
           +Q +LE LPAMV  V SDD  +QL+ATTQFRKLLSIERSPPI EVI +GVVPRFI FL R
Sbjct: 73  LQQKLEGLPAMVQAVQSDDSAVQLEATTQFRKLLSIERSPPIEEVINTGVVPRFIAFLQR 132

Query: 85  DDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVA 144
           +D+PQLQFEAAWALTNIASGTS+NT+VV++ GAVPIFV+LLSSP++DVREQAVWALGNVA
Sbjct: 133 EDYPQLQFEAAWALTNIASGTSDNTKVVVESGAVPIFVKLLSSPSEDVREQAVWALGNVA 192

Query: 145 GDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPA 204
           GDSPKCRDLVL++G L PLL Q NEHAKLSMLRNATWTLSNFCRGKPQP FEQ +PAL A
Sbjct: 193 GDSPKCRDLVLASGGLYPLLQQLNEHAKLSMLRNATWTLSNFCRGKPQPNFEQVKPALSA 252

Query: 205 LERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALR 264
           L+RLIHS D+EVLTDACWALSYLSDGTNDKIQAVIE+GV PRLVELL HPS SVLIPALR
Sbjct: 253 LQRLIHSQDEEVLTDACWALSYLSDGTNDKIQAVIESGVFPRLVELLMHPSASVLIPALR 312

Query: 265 TVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAII 324
           TVGNIVTGDDMQTQC+I+HQALPCLL+LLT N+KKSIKKEACWTISNITAGN  QIQA+I
Sbjct: 313 TVGNIVTGDDMQTQCVIDHQALPCLLNLLTNNHKKSIKKEACWTISNITAGNREQIQAVI 372

Query: 325 EAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDP 384
            A II PLV+LL  AEF+IKKEAAWAISNATSGG+++QIK+LV+QGCIKPLCDLL CPDP
Sbjct: 373 NANIIAPLVHLLQTAEFDIKKEAAWAISNATSGGTHDQIKYLVAQGCIKPLCDLLVCPDP 432

Query: 385 RIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKA 444
           RIVTVCLEGLENILK GEAEKN+G  G VN +AQ IDDAEGLEKIENLQSHDNTEIYEKA
Sbjct: 433 RIVTVCLEGLENILKVGEAEKNLG-AGDVNSYAQMIDDAEGLEKIENLQSHDNTEIYEKA 491

Query: 445 VKILETYWVEEDEDEPLPPGDATQAGFGFAGNGLPVPSGGFNFG 488
           VK+LE+YW+EE ED+ +P GD  Q GF F      VPSGGFNFG
Sbjct: 492 VKMLESYWLEE-EDDAMPSGDNAQNGFNFGNQQPNVPSGGFNFG 534

Functions in nuclear protein import. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope. In conjunction with importin beta-1, mediates the nuclear envelope docking, and the subsequent translocation into the nucleus of the constitutive morphogenetic 1 (COP1) protein containing bipartite NLS motif.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q71VM4|IMA1A_ORYSJ Importin subunit alpha-1a OS=Oryza sativa subsp. japonica GN=Os01g0253300 PE=1 SV=2

 Score =  768 bits (1983), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/434 (85%), Positives = 403/434 (92%), Gaps = 1/434 (0%)

Query: 25  IQLQLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSR 84
           +  +LESLPAM+ GV+SDD N+QL+ATTQFRKLLSIERSPPI EVIQSGVVPRF++FL+R
Sbjct: 67  VDKKLESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTR 126

Query: 85  DDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVA 144
           +DFPQLQFEAAWALTNIASGTSENT+VVIDHGAVPIFV+LL S +DDVREQAVWALGNVA
Sbjct: 127 EDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVA 186

Query: 145 GDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPA 204
           GDSPKCRDLVL+NGAL+PLLAQ NEH KLSMLRNATWTLSNFCRGKPQP FEQTRPALPA
Sbjct: 187 GDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPA 246

Query: 205 LERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALR 264
           L RLIHSND+EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL HPSPSVLIPALR
Sbjct: 247 LARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALR 306

Query: 265 TVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAII 324
           TVGNIVTGDD QTQCII+HQALPCLL LLTQN KKSIKKEACWTISNITAGN +QIQA+I
Sbjct: 307 TVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVI 366

Query: 325 EAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDP 384
            AGIIGPLVNLL  AEF+IKKEAAWAISNATSGGS++QIK+LVS+GCIKPLCDLL CPD 
Sbjct: 367 NAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDI 426

Query: 385 RIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKA 444
           RIVTVCLEGLENILK GE +K +   G VN+F+Q ID+AEGLEKIENLQSHDN EIYEKA
Sbjct: 427 RIVTVCLEGLENILKVGETDKTLA-AGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKA 485

Query: 445 VKILETYWVEEDED 458
           VKILE YW++E++D
Sbjct: 486 VKILEAYWMDEEDD 499

Functions in nuclear protein import. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|O04294|IMA2_ARATH Importin subunit alpha-2 OS=Arabidopsis thaliana GN=KAP2 PE=1 SV=2

 Score =  711 bits (1834), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/458 (75%), Positives = 401/458 (87%), Gaps = 2/458 (0%)

Query: 30  ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQ 89
           ++LPAMVAG+WS+D N QL+AT   RKLLSIE++PPINEV+QSGVVPR ++FLSRDDFP+
Sbjct: 75  DNLPAMVAGIWSEDSNSQLEATNLLRKLLSIEQNPPINEVVQSGVVPRVVKFLSRDDFPK 134

Query: 90  LQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK 149
           LQFEAAWALTNIASGTSENT V+I+ GAVPIF++LLSS ++DVREQAVWALGNVAGDSPK
Sbjct: 135 LQFEAAWALTNIASGTSENTNVIIESGAVPIFIQLLSSASEDVREQAVWALGNVAGDSPK 194

Query: 150 CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLI 209
           CRDLVLS GA+ PLL+QFNE+ KLSMLRNATWTLSNFCRGKP P FEQT+PALP LERL+
Sbjct: 195 CRDLVLSYGAMTPLLSQFNENTKLSMLRNATWTLSNFCRGKPPPAFEQTQPALPVLERLV 254

Query: 210 HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNI 269
            S D+EVLTDACWALSYLSD +NDKIQAVIEAGV PRL++LL H SPSVLIPALRT+GNI
Sbjct: 255 QSMDEEVLTDACWALSYLSDNSNDKIQAVIEAGVVPRLIQLLGHSSPSVLIPALRTIGNI 314

Query: 270 VTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGII 329
           VTGDD+QTQ +++ QALPCLL+LL  NYKKSIKKEACWTISNITAGN +QIQA+I+AGII
Sbjct: 315 VTGDDLQTQMVLDQQALPCLLNLLKNNYKKSIKKEACWTISNITAGNADQIQAVIDAGII 374

Query: 330 GPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTV 389
             LV +L +AEFE+KKEAAW ISNATSGG+++QIKF+VSQGCIKPLCDLL CPD ++VTV
Sbjct: 375 QSLVWVLQSAEFEVKKEAAWGISNATSGGTHDQIKFMVSQGCIKPLCDLLTCPDLKVVTV 434

Query: 390 CLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILE 449
           CLE LENIL  GEAEKN+G+TG  NL+AQ ID+AEGLEKIENLQSHDN +IY+KAVKILE
Sbjct: 435 CLEALENILVVGEAEKNLGHTGEDNLYAQMIDEAEGLEKIENLQSHDNNDIYDKAVKILE 494

Query: 450 TYWVEEDEDEPLPPGDATQAGFGFAGNGLPVPSGGFNF 487
           T+W E++E+E      A Q+GF F      VP G FNF
Sbjct: 495 TFWTEDNEEEGNDENHAPQSGFQFGSTN--VPPGQFNF 530

Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope. Seems to act as a cytosolic receptor for both simple and bipartite NLS motifs.

Arabidopsis thaliana (taxid: 3702)

>sp|Q76P29|IMAB_DICDI Importin subunit alpha-B OS=Dictyostelium discoideum GN=DDB_G0272318 PE=3 SV=1

 Score =  558 bits (1437), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 284/453 (62%), Positives = 351/453 (77%), Gaps = 10/453 (2%)

Query: 24  IIQLQLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLS 83
           +I  +LE LP++VA + S++ ++ L +TT FRKLLSIE+SPPI EVI++G+VPR ++FL 
Sbjct: 61  LINQRLEQLPSLVAEINSENPDLILKSTTAFRKLLSIEKSPPIEEVIKTGIVPRLVKFLY 120

Query: 84  RDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNV 143
             DFPQLQFEAAWALTNIASGT E TRVVI++GA+ +FV LLSSP DDVREQAVWALGN+
Sbjct: 121 MQDFPQLQFEAAWALTNIASGTPEQTRVVIENGAIQVFVLLLSSPHDDVREQAVWALGNI 180

Query: 144 AGDSPKCRDLVLSNGALMPLLAQFNEHA--KLSMLRNATWTLSNFCRGKPQPLFEQTRPA 201
           AGDS  CRDLVLS+ AL PLL+     A  K+SM+RNATWTLSNFCRGKPQP FE  R +
Sbjct: 181 AGDSHYCRDLVLSHNALPPLLSLLQNPAAIKVSMVRNATWTLSNFCRGKPQPPFEIVRAS 240

Query: 202 LPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIP 261
           LP L +LI+  D+EVL DACWALSYLSDG+N++IQ VI+A VC ++VELL HP+ +V  P
Sbjct: 241 LPVLAKLIYYQDEEVLIDACWALSYLSDGSNERIQEVIDAKVCRKMVELLGHPTIAVQTP 300

Query: 262 ALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQ 321
           ALRT+GNIVTGDD QTQ +++ QAL  LL+LL Q+ K++I+KEACWTISNITAG+ NQIQ
Sbjct: 301 ALRTIGNIVTGDDNQTQIVLSVQALSHLLNLL-QSPKRAIRKEACWTISNITAGDKNQIQ 359

Query: 322 AIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNC 381
            +I+A II  LV LL NAEFEI+KEAAWAISNATS G+ +QI FLVSQGC+KPLCDLL  
Sbjct: 360 QVIDANIIPSLVYLLANAEFEIQKEAAWAISNATSCGTPQQIHFLVSQGCVKPLCDLLKV 419

Query: 382 PDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIY 441
            DPRI+ V LEG+ENIL AG+ E       GVN + + I+DA+GL KI +LQ H N + +
Sbjct: 420 SDPRIINVALEGIENILVAGKKE---AQVTGVNPYKKIIEDADGLGKIYDLQHHMNKDTF 476

Query: 442 EKAVKILETYWVEEDEDEPLPPGDATQAGFGFA 474
           EK  +I+ TY  +E EDE    GD    G  F+
Sbjct: 477 EKVSRIISTYLEDEQEDE----GDLMPEGSSFS 505

Functions in nuclear protein import via a substrate-importin alpha-beta transport complex that passes though the nuclear pore complexes (NPC). Binds specifically and directly to substrates containing either a simple or bipartite NLS motif.

Dictyostelium discoideum (taxid: 44689)

>sp|O35345|IMA7_MOUSE Importin subunit alpha-7 OS=Mus musculus GN=Kpna6 PE=1 SV=2

 Score =  515 bits (1327), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 269/442 (60%), Positives = 328/442 (74%), Gaps = 5/442 (1%)

Query: 35  MVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQS-GVVPRFIEFLSRDDFPQLQFE 93
           MV  ++SDD ++QL  T +FRKLLS E SPPI+EVI + GVV RF+EFL R++   LQFE
Sbjct: 85  MVEMLFSDDSDLQLATTQKFRKLLSKEPSPPIDEVINTPGVVDRFVEFLKRNENCTLQFE 144

Query: 94  AAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDL 153
           AAWALTNIASGTS+ T++VI+ GAVPIF+ LL+S  +DV+EQAVWALGN+AGDS  CRD 
Sbjct: 145 AAWALTNIASGTSQQTKIVIEAGAVPIFIELLNSDFEDVQEQAVWALGNIAGDSSLCRDY 204

Query: 154 VLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIHSN 212
           VL+   L PLL    +  +L+M RNA W LSN CRGK P P F +  P LP L RL+ S+
Sbjct: 205 VLNCSILNPLLTLLTKSTRLTMTRNAVWALSNLCRGKNPPPEFAKVSPCLPVLSRLLFSS 264

Query: 213 DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTG 272
           D ++L DACWALSYLSDG N+KIQAVI++GVC RLVELL H    V  PALR VGNIVTG
Sbjct: 265 DSDLLADACWALSYLSDGPNEKIQAVIDSGVCRRLVELLMHNDYKVASPALRAVGNIVTG 324

Query: 273 DDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPL 332
           DD+QTQ I+N  ALPCLL LL+ + K+SI+KEACWTISNITAGN  QIQA+I+A I   L
Sbjct: 325 DDIQTQVILNCSALPCLLHLLSSS-KESIRKEACWTISNITAGNRAQIQAVIDANIFPVL 383

Query: 333 VNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLE 392
           + +L  AEF  +KEAAWAI+NATSGG+ EQI++LVS GCIKPLCDLL   D +IV V L 
Sbjct: 384 IEILQKAEFRTRKEAAWAITNATSGGTPEQIRYLVSLGCIKPLCDLLTVMDSKIVQVALN 443

Query: 393 GLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYW 452
           GLENIL+ GE E     + GVN +   I++A GL+KIE LQSH+N EIY+KA  ++E Y+
Sbjct: 444 GLENILRLGEQESKRSGS-GVNPYCGLIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYF 502

Query: 453 VEEDEDEPLPPG-DATQAGFGF 473
             ED+D  L P  D TQ  F F
Sbjct: 503 GVEDDDSSLAPQVDETQQQFIF 524

Functions in nuclear protein import as an adapter protein for nuclear receptor KPNB1. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Docking of the importin/substrate complex to the nuclear pore complex (NPC) is mediated by KPNB1 through binding to nucleoporin FxFG repeats and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin-beta and the three components separate and importin-alpha and -beta are re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran from importin. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus.

Mus musculus (taxid: 10090)

>sp|Q0V7M0|IMA7_BOVIN Importin subunit alpha-7 OS=Bos taurus GN=KPNA6 PE=2 SV=1

 Score =  513 bits (1321), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 269/442 (60%), Positives = 328/442 (74%), Gaps = 5/442 (1%)

Query: 35  MVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQS-GVVPRFIEFLSRDDFPQLQFE 93
           MV  ++SDD ++QL  T +FRKLLS E SPPI+EVI + GVV RF+EFL R++   LQFE
Sbjct: 85  MVEMLFSDDPDLQLATTQKFRKLLSKEPSPPIDEVINTPGVVDRFVEFLKRNENCTLQFE 144

Query: 94  AAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDL 153
           AAWALTNIASGTS+ T++VI+ GAVPIF+ LL+S  +DV+EQAVWALGN+AGDS  CRD 
Sbjct: 145 AAWALTNIASGTSQQTKIVIEAGAVPIFIELLNSDFEDVQEQAVWALGNIAGDSSVCRDY 204

Query: 154 VLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIHSN 212
           VL+   L PLL    +  +L+M RNA W LSN CRGK P P F +  P LP L RL+ S+
Sbjct: 205 VLNCSILNPLLTLLTKSTRLTMTRNAVWALSNLCRGKNPPPEFAKVSPCLPVLSRLLFSS 264

Query: 213 DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTG 272
           D ++L DACWALSYLSDG N+KIQAVI++GVC RLVELL H    V  PALR VGNIVTG
Sbjct: 265 DSDLLADACWALSYLSDGPNEKIQAVIDSGVCRRLVELLMHNDNKVASPALRAVGNIVTG 324

Query: 273 DDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPL 332
           DD+QTQ I+N  ALPCLL LL+ + K+SI+KEACWTISNITAGN  QIQA+I+A I   L
Sbjct: 325 DDIQTQVILNCSALPCLLHLLSSS-KESIRKEACWTISNITAGNRAQIQAVIDANIFPVL 383

Query: 333 VNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLE 392
           + +L  AEF  +KEAAWAI+NATSGG+ EQI++LVS GCIKPLCDLL   D +IV V L 
Sbjct: 384 IEILQKAEFRTRKEAAWAITNATSGGTPEQIRYLVSLGCIKPLCDLLTVMDSKIVQVALN 443

Query: 393 GLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYW 452
           GLENIL+ GE E     + GVN +   I++A GL+KIE LQSH+N EIY+KA  ++E Y+
Sbjct: 444 GLENILRLGEQEGKRSGS-GVNPYCGLIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYF 502

Query: 453 VEEDEDEPLPPG-DATQAGFGF 473
             ED+D  L P  D TQ  F F
Sbjct: 503 GVEDDDSSLAPQVDETQQQFIF 524

Functions in nuclear protein import as an adapter protein for nuclear receptor KPNB1. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Docking of the importin/substrate complex to the nuclear pore complex (NPC) is mediated by KPNB1 through binding to nucleoporin FxFG repeats and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin-beta and the three components separate and importin-alpha and -beta are re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran from importin. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus.

Bos taurus (taxid: 9913)

>sp|Q5RBV0|IMA7_PONAB Importin subunit alpha-7 OS=Pongo abelii GN=KPNA6 PE=2 SV=1

 Score =  510 bits (1314), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 268/442 (60%), Positives = 327/442 (73%), Gaps = 5/442 (1%)

Query: 35  MVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQS-GVVPRFIEFLSRDDFPQLQFE 93
           MV  ++SDD ++QL  T +FRKLLS E SPPI+EVI +  VV RF+EFL R++   LQFE
Sbjct: 85  MVEMLFSDDSDLQLATTQKFRKLLSKEPSPPIDEVINTPRVVDRFVEFLKRNENCTLQFE 144

Query: 94  AAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDL 153
           AAWALTNIASGTS+ T++VI+ GAVPIF+ LL+S  +DV+EQAVWALGN+AGDS  CRD 
Sbjct: 145 AAWALTNIASGTSQQTKIVIEAGAVPIFIELLNSDFEDVQEQAVWALGNIAGDSSVCRDY 204

Query: 154 VLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIHSN 212
           VL+   L PLL    +  +L+M RNA W LSN CRGK P P F +  P LP L RL+ S+
Sbjct: 205 VLNCSILNPLLTLLTKSTRLTMTRNAVWALSNLCRGKNPPPEFAKVSPCLPVLSRLLFSS 264

Query: 213 DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTG 272
           D ++L DACWALSYLSDG N+KIQAVI++GVC RLVELL H    V  PALR VGNIVTG
Sbjct: 265 DSDLLADACWALSYLSDGPNEKIQAVIDSGVCRRLVELLMHNDYKVASPALRAVGNIVTG 324

Query: 273 DDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPL 332
           DD+QTQ I+N  ALPCLL LL+ + K+SI+KEACWTISNITAGN  QIQA+I+A I   L
Sbjct: 325 DDIQTQVILNCSALPCLLHLLS-SPKESIRKEACWTISNITAGNRAQIQAVIDANIFPVL 383

Query: 333 VNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLE 392
           + +L  AEF  +KEAAWAI+NATSGG+ EQI++LVS GCIKPLCDLL   D +IV V L 
Sbjct: 384 IEILQKAEFRTRKEAAWAITNATSGGTPEQIRYLVSLGCIKPLCDLLTVMDSKIVQVALN 443

Query: 393 GLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYW 452
           GLENIL+ GE E     + GVN +   I++A GL+KIE LQSH+N EIY+KA  ++E Y+
Sbjct: 444 GLENILRLGEQEGKRSGS-GVNPYCGLIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYF 502

Query: 453 VEEDEDEPLPPG-DATQAGFGF 473
             ED+D  L P  D TQ  F F
Sbjct: 503 GVEDDDSSLAPQVDETQQQFIF 524

Functions in nuclear protein import as an adapter protein for nuclear receptor KPNB1. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Docking of the importin/substrate complex to the nuclear pore complex (NPC) is mediated by KPNB1 through binding to nucleoporin FxFG repeats and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin-beta and the three components separate and importin-alpha and -beta are re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran from importin. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus.

Pongo abelii (taxid: 9601)

>sp|O60684|IMA7_HUMAN Importin subunit alpha-7 OS=Homo sapiens GN=KPNA6 PE=1 SV=1

 Score =  510 bits (1314), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 268/442 (60%), Positives = 327/442 (73%), Gaps = 5/442 (1%)

Query: 35  MVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQS-GVVPRFIEFLSRDDFPQLQFE 93
           MV  ++SDD ++QL  T +FRKLLS E SPPI+EVI +  VV RF+EFL R++   LQFE
Sbjct: 85  MVEMLFSDDSDLQLATTQKFRKLLSKEPSPPIDEVINTPRVVDRFVEFLKRNENCTLQFE 144

Query: 94  AAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDL 153
           AAWALTNIASGTS+ T++VI+ GAVPIF+ LL+S  +DV+EQAVWALGN+AGDS  CRD 
Sbjct: 145 AAWALTNIASGTSQQTKIVIEAGAVPIFIELLNSDFEDVQEQAVWALGNIAGDSSVCRDY 204

Query: 154 VLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIHSN 212
           VL+   L PLL    +  +L+M RNA W LSN CRGK P P F +  P LP L RL+ S+
Sbjct: 205 VLNCSILNPLLTLLTKSTRLTMTRNAVWALSNLCRGKNPPPEFAKVSPCLPVLSRLLFSS 264

Query: 213 DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTG 272
           D ++L DACWALSYLSDG N+KIQAVI++GVC RLVELL H    V  PALR VGNIVTG
Sbjct: 265 DSDLLADACWALSYLSDGPNEKIQAVIDSGVCRRLVELLMHNDYKVASPALRAVGNIVTG 324

Query: 273 DDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPL 332
           DD+QTQ I+N  ALPCLL LL+ + K+SI+KEACWTISNITAGN  QIQA+I+A I   L
Sbjct: 325 DDIQTQVILNCSALPCLLHLLS-SPKESIRKEACWTISNITAGNRAQIQAVIDANIFPVL 383

Query: 333 VNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLE 392
           + +L  AEF  +KEAAWAI+NATSGG+ EQI++LVS GCIKPLCDLL   D +IV V L 
Sbjct: 384 IEILQKAEFRTRKEAAWAITNATSGGTPEQIRYLVSLGCIKPLCDLLTVMDSKIVQVALN 443

Query: 393 GLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYW 452
           GLENIL+ GE E     + GVN +   I++A GL+KIE LQSH+N EIY+KA  ++E Y+
Sbjct: 444 GLENILRLGEQEGKRSGS-GVNPYCGLIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYF 502

Query: 453 VEEDEDEPLPPG-DATQAGFGF 473
             ED+D  L P  D TQ  F F
Sbjct: 503 GVEDDDSSLAPQVDETQQQFIF 524

Functions in nuclear protein import as an adapter protein for nuclear receptor KPNB1. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Docking of the importin/substrate complex to the nuclear pore complex (NPC) is mediated by KPNB1 through binding to nucleoporin FxFG repeats and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin-beta and the three components separate and importin-alpha and -beta are re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran from importin. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	488
255548535	454	importin alpha, putative [Ricinus commun	0.930	1.0	0.881	0.0
255542844	531	importin alpha, putative [Ricinus commun	0.946	0.870	0.868	0.0
224128392	538	predicted protein [Populus trichocarpa]	0.940	0.853	0.863	0.0
356535026	532	PREDICTED: importin subunit alpha-1-like	0.948	0.870	0.858	0.0
356576835	532	PREDICTED: importin subunit alpha-1-like	0.948	0.870	0.858	0.0
224130302	529	predicted protein [Populus trichocarpa]	0.946	0.873	0.859	0.0
224122988	529	predicted protein [Populus trichocarpa]	0.940	0.867	0.863	0.0
356556046	531	PREDICTED: importin subunit alpha-1-like	0.948	0.871	0.862	0.0
356529274	531	PREDICTED: importin subunit alpha-1-like	0.948	0.871	0.859	0.0
224123916	529	predicted protein [Populus trichocarpa]	0.942	0.869	0.854	0.0

>gi|255548535|ref|XP_002515324.1| importin alpha, putative [Ricinus communis] gi|223545804|gb|EEF47308.1| importin alpha, putative [Ricinus communis]

 Score =  836 bits (2159), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/454 (88%), Positives = 429/454 (94%)

Query: 35  MVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEA 94
           MVAGVWS+D+N QL+ATT FRKLLSIERSPPINEV+QSGVVPRFIEFL+RDDFPQLQFEA
Sbjct: 1   MVAGVWSEDKNAQLEATTHFRKLLSIERSPPINEVVQSGVVPRFIEFLARDDFPQLQFEA 60

Query: 95  AWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLV 154
           AWALTNIASGTSENT+VVIDHGAVPIF++LLSSPTDDVREQAVWALGN+AGDSPKCRD V
Sbjct: 61  AWALTNIASGTSENTKVVIDHGAVPIFIKLLSSPTDDVREQAVWALGNIAGDSPKCRDFV 120

Query: 155 LSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDD 214
           L +GALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQP FEQT+PALPALERLIHSND+
Sbjct: 121 LGHGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPSFEQTKPALPALERLIHSNDE 180

Query: 215 EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDD 274
           EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL HPSP+VLIPALRTVGNIVTGDD
Sbjct: 181 EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPTVLIPALRTVGNIVTGDD 240

Query: 275 MQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVN 334
           MQTQC+INHQALPCLL+LLT NYKKSIKKEACWTISNITAGNVNQIQAII+A +IGPL+ 
Sbjct: 241 MQTQCMINHQALPCLLNLLTHNYKKSIKKEACWTISNITAGNVNQIQAIIDADLIGPLIQ 300

Query: 335 LLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGL 394
           LL  AEFEIKKEAAWAISNATSGG++EQIK+LVSQGCIKPLCDLL CPDPRIVTVCLEGL
Sbjct: 301 LLQIAEFEIKKEAAWAISNATSGGTHEQIKYLVSQGCIKPLCDLLICPDPRIVTVCLEGL 360

Query: 395 ENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVE 454
           ENILK GEAEKN+GNTG  NL+AQ ID+AEGLEKIENLQSHDN +IYEKAVKILETYW+E
Sbjct: 361 ENILKVGEAEKNLGNTGDANLYAQMIDEAEGLEKIENLQSHDNNDIYEKAVKILETYWLE 420

Query: 455 EDEDEPLPPGDATQAGFGFAGNGLPVPSGGFNFG 488
           EDEDE L P DA+Q+GF F GN +P PSGGF FG
Sbjct: 421 EDEDEALAPADASQSGFHFGGNEVPAPSGGFKFG 454

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542844|ref|XP_002512485.1| importin alpha, putative [Ricinus communis] gi|223548446|gb|EEF49937.1| importin alpha, putative [Ricinus communis]

 Score =  835 bits (2156), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 404/465 (86%), Positives = 437/465 (93%), Gaps = 3/465 (0%)

Query: 25  IQLQLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSR 84
           ++ +LE LP+MVAGVWSDD N+QL+ATTQFRKLLSIERSPPI EVIQ+GVVPRF+EFL R
Sbjct: 67  VEKKLEHLPSMVAGVWSDDSNLQLEATTQFRKLLSIERSPPIEEVIQAGVVPRFVEFLMR 126

Query: 85  DDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVA 144
           +DFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFV+LL+SP+DDVREQAVWALGNVA
Sbjct: 127 EDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVA 186

Query: 145 GDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPA 204
           GDSPKCRDLVL NGAL+PLLAQ NEHAKLSMLRNATWTLSNFCRGKPQP FEQ +PALPA
Sbjct: 187 GDSPKCRDLVLGNGALLPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPFFEQVKPALPA 246

Query: 205 LERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALR 264
           L RLIHSND+EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL HPSPSVLIPALR
Sbjct: 247 LARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALR 306

Query: 265 TVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAII 324
           TVGNIVTGDDMQTQCIINHQALPCLL+LLT NYKKSIKKEACWTISNITAGN  QIQA+I
Sbjct: 307 TVGNIVTGDDMQTQCIINHQALPCLLNLLTNNYKKSIKKEACWTISNITAGNKEQIQAVI 366

Query: 325 EAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDP 384
           EA IIGPLV+LL NAEF+IKKEAAWAISNATSGG+++QIK+LVSQGCIKPLCDLL CPDP
Sbjct: 367 EANIIGPLVHLLENAEFDIKKEAAWAISNATSGGTHDQIKYLVSQGCIKPLCDLLICPDP 426

Query: 385 RIVTVCLEGLENILKAGEAEKNMGNT-GGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEK 443
           RIVTVCLEGLENILK GEA+KN+GN  GGVNL+AQ IDDAEGLEKIENLQSHDN EIYEK
Sbjct: 427 RIVTVCLEGLENILKVGEADKNLGNNDGGVNLYAQMIDDAEGLEKIENLQSHDNIEIYEK 486

Query: 444 AVKILETYWVEEDEDEPLPPGDATQAGFGFAGNGLP-VPSGGFNF 487
           AVKILETYW+EE EDE +PPGDA+Q+GF F G+ +P +PSGGFNF
Sbjct: 487 AVKILETYWLEE-EDETMPPGDASQSGFQFGGSDMPTIPSGGFNF 530

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224128392|ref|XP_002320318.1| predicted protein [Populus trichocarpa] gi|222861091|gb|EEE98633.1| predicted protein [Populus trichocarpa]

 Score =  830 bits (2144), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 397/460 (86%), Positives = 429/460 (93%), Gaps = 1/460 (0%)

Query: 29  LESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFP 88
           L++LPAM+AGVWSDD+NIQ + TT FRKLLSIERSPPINEVIQSGVVPRFIEFL+RDDFP
Sbjct: 78  LDTLPAMIAGVWSDDKNIQFEGTTHFRKLLSIERSPPINEVIQSGVVPRFIEFLARDDFP 137

Query: 89  QLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSP 148
           QLQFEAAWALTNIASGTSENTRVVIDHGA+PIFV+LLSSP +DVREQAVWALGNVAGDSP
Sbjct: 138 QLQFEAAWALTNIASGTSENTRVVIDHGAIPIFVKLLSSPAEDVREQAVWALGNVAGDSP 197

Query: 149 KCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERL 208
           KCRDLVL +GALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLF+QT+PALPALERL
Sbjct: 198 KCRDLVLGHGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFDQTKPALPALERL 257

Query: 209 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN 268
           IHSND+EVLTDACWALSYLSDG+N+KIQAVIEAGVCPRLVELLRH SP+VLIPALR VGN
Sbjct: 258 IHSNDNEVLTDACWALSYLSDGSNEKIQAVIEAGVCPRLVELLRHQSPTVLIPALRAVGN 317

Query: 269 IVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGI 328
           IVTGDDMQTQC+INHQALPCLL+LLT NYKKSIKKEACWTISN+TAGN NQIQA++EAGI
Sbjct: 318 IVTGDDMQTQCMINHQALPCLLNLLTNNYKKSIKKEACWTISNVTAGNANQIQAVLEAGI 377

Query: 329 IGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVT 388
           IGPLV LL NAEFEIKKEAAWAISNATSGGS+EQIKFLV QGCIKPLCDLL CPDPRIVT
Sbjct: 378 IGPLVQLLQNAEFEIKKEAAWAISNATSGGSHEQIKFLVDQGCIKPLCDLLICPDPRIVT 437

Query: 389 VCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKIL 448
           VCLEGLENILK GEA+KN+GNTG  NL+ Q I+D EGLEKIENLQSHDN EIYEKAVKIL
Sbjct: 438 VCLEGLENILKVGEAKKNLGNTGNANLYTQMIEDVEGLEKIENLQSHDNNEIYEKAVKIL 497

Query: 449 ETYWVEEDED-EPLPPGDATQAGFGFAGNGLPVPSGGFNF 487
           ET+WVE+ +D E  PPGDA+Q+GF F G  +PV S GF F
Sbjct: 498 ETFWVEDGDDFEAFPPGDASQSGFQFGGTEVPVSSNGFKF 537

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356535026|ref|XP_003536050.1| PREDICTED: importin subunit alpha-1-like [Glycine max]

 Score =  826 bits (2134), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/465 (85%), Positives = 434/465 (93%), Gaps = 2/465 (0%)

Query: 24  IIQLQLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLS 83
           +++ +LE LP+MV GVW+DD N+QL+ATTQFRKLLSIERSPPI EVIQ+GVV RF+EFL 
Sbjct: 68  LVEKKLEHLPSMVTGVWTDDNNLQLEATTQFRKLLSIERSPPIEEVIQTGVVSRFVEFLM 127

Query: 84  RDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNV 143
           R+DFPQLQFEAAWALTNIASGTSENT+VVIDHGAVPIFV+LL+SP+DDVREQAVWALGNV
Sbjct: 128 REDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNV 187

Query: 144 AGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALP 203
           AGDSP+CRDLVLS+GAL+PLLAQ NEHAKLSMLRNATWTLSNFCRGKPQP F+Q +PALP
Sbjct: 188 AGDSPRCRDLVLSHGALLPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFDQVKPALP 247

Query: 204 ALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPAL 263
           AL RLIHSND+EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL HPSPSVLIPAL
Sbjct: 248 ALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPAL 307

Query: 264 RTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAI 323
           RTVGNIVTGDDMQTQ IINHQALPCLL+LLT NYKKSIKKEACWTISNITAGN  QIQA+
Sbjct: 308 RTVGNIVTGDDMQTQVIINHQALPCLLNLLTNNYKKSIKKEACWTISNITAGNKQQIQAV 367

Query: 324 IEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPD 383
           IEA +I PLVNLL NAEF+IKKEAAWAISNATSGGS+EQIKFLVSQGCIKPLCDLL CPD
Sbjct: 368 IEANLIAPLVNLLQNAEFDIKKEAAWAISNATSGGSHEQIKFLVSQGCIKPLCDLLICPD 427

Query: 384 PRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEK 443
           PRIVTVCLEGLENILK GEA+KN+GNTG VNL+AQ ID+AEGLEKIENLQSHDNTEIYEK
Sbjct: 428 PRIVTVCLEGLENILKVGEADKNIGNTGDVNLYAQMIDEAEGLEKIENLQSHDNTEIYEK 487

Query: 444 AVKILETYWVEEDEDEPLPPGDATQAGFGFAGNGLP-VPSGGFNF 487
           AVKILETYW+EE EDE +PPGDA+Q+GF F  +  P VPSGGFNF
Sbjct: 488 AVKILETYWLEE-EDETMPPGDASQSGFNFGSSDAPTVPSGGFNF 531

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356576835|ref|XP_003556535.1| PREDICTED: importin subunit alpha-1-like [Glycine max]

 Score =  826 bits (2134), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/465 (85%), Positives = 434/465 (93%), Gaps = 2/465 (0%)

Query: 24  IIQLQLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLS 83
           +++ +LE LP+MV GVW+DD N+QL+ATTQFRKLLSIERSPPI EVIQ+GVV RF+EFL 
Sbjct: 68  LVEKKLEHLPSMVTGVWTDDNNLQLEATTQFRKLLSIERSPPIEEVIQTGVVSRFVEFLM 127

Query: 84  RDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNV 143
           R+DFPQLQFEAAWALTNIASGTSENT+VVIDHGAVPIFV+LL+SP+DDVREQAVWALGNV
Sbjct: 128 REDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNV 187

Query: 144 AGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALP 203
           AGDSP+CRDLVLS+GAL+PLLAQ NEHAKLSMLRNATWTLSNFCRGKPQP F+Q +PALP
Sbjct: 188 AGDSPRCRDLVLSHGALLPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFDQVKPALP 247

Query: 204 ALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPAL 263
           AL RLIHSND+EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL HPSPSVLIPAL
Sbjct: 248 ALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPAL 307

Query: 264 RTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAI 323
           RTVGNIVTGDDMQTQ IINHQALPCLL+LLT NYKKSIKKEACWTISNITAGN  QIQA+
Sbjct: 308 RTVGNIVTGDDMQTQVIINHQALPCLLNLLTNNYKKSIKKEACWTISNITAGNKQQIQAV 367

Query: 324 IEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPD 383
           IEA +I PLVNLL NAEF+IKKEAAWAISNATSGGS+EQIKFLVSQGCIKPLCDLL CPD
Sbjct: 368 IEANLIAPLVNLLQNAEFDIKKEAAWAISNATSGGSHEQIKFLVSQGCIKPLCDLLICPD 427

Query: 384 PRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEK 443
           PRIVTVCLEGLENILK GEA+KN+GNTG VNL+AQ ID+AEGLEKIENLQSHDNTEIYEK
Sbjct: 428 PRIVTVCLEGLENILKVGEADKNIGNTGDVNLYAQMIDEAEGLEKIENLQSHDNTEIYEK 487

Query: 444 AVKILETYWVEEDEDEPLPPGDATQAGFGFAGNGLP-VPSGGFNF 487
           AVKILETYW+EE EDE +PPGDA+Q+GF F  +  P VPSGGFNF
Sbjct: 488 AVKILETYWLEE-EDETMPPGDASQSGFNFGSSDAPAVPSGGFNF 531

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224130302|ref|XP_002328576.1| predicted protein [Populus trichocarpa] gi|222838558|gb|EEE76923.1| predicted protein [Populus trichocarpa]

 Score =  826 bits (2134), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 398/463 (85%), Positives = 429/463 (92%), Gaps = 1/463 (0%)

Query: 25  IQLQLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSR 84
           ++ +LESLP+MV+GVWSDD N+QL+ATTQFRKLLSIERSPPI EVIQ+GVVPRF+E L R
Sbjct: 68  MEKKLESLPSMVSGVWSDDSNLQLEATTQFRKLLSIERSPPIEEVIQAGVVPRFVELLVR 127

Query: 85  DDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVA 144
           +DFPQLQFEAAWALTNIASGTSENT+VVIDHGAVPIFV+LL SP+DDVREQAVWALGNVA
Sbjct: 128 EDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSPSDDVREQAVWALGNVA 187

Query: 145 GDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPA 204
           GDSPKCRDLVLS+GAL+PLLAQ NEHAKLSMLRNATWTLSNFCRGKPQPLFE+ RPALPA
Sbjct: 188 GDSPKCRDLVLSHGALIPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPLFEKVRPALPA 247

Query: 205 LERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALR 264
           LERL+HS D+EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL HPSPSVL+PALR
Sbjct: 248 LERLVHSTDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLVPALR 307

Query: 265 TVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAII 324
           TVGNIVTGDDMQTQCIIN  ALPCLL LLT N+KKSIKKEACWTISNITAGN  QIQA+I
Sbjct: 308 TVGNIVTGDDMQTQCIINTGALPCLLSLLTHNHKKSIKKEACWTISNITAGNKEQIQAVI 367

Query: 325 EAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDP 384
           EAG+IGPLVNLL NAEF+IKKEAAWA+SNATSGG++EQIKFLVSQGCIKPLCDLL CPDP
Sbjct: 368 EAGLIGPLVNLLQNAEFDIKKEAAWAVSNATSGGTHEQIKFLVSQGCIKPLCDLLVCPDP 427

Query: 385 RIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKA 444
           RIVTVCLEGLENILK GEAEKN+GN+G VN +AQ IDDAEGLEKIENLQSHDN EIYEKA
Sbjct: 428 RIVTVCLEGLENILKVGEAEKNLGNSGDVNFYAQMIDDAEGLEKIENLQSHDNNEIYEKA 487

Query: 445 VKILETYWVEEDEDEPLPPGDATQAGFGFAGNGLPVPSGGFNF 487
           VKILETYW+EED DE LP GD  Q GF F  N + VPSGGFNF
Sbjct: 488 VKILETYWLEED-DEALPSGDGAQQGFHFGENNVQVPSGGFNF 529

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122988|ref|XP_002318966.1| predicted protein [Populus trichocarpa] gi|222857342|gb|EEE94889.1| predicted protein [Populus trichocarpa]

 Score =  825 bits (2130), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 397/460 (86%), Positives = 431/460 (93%), Gaps = 1/460 (0%)

Query: 28  QLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDF 87
           +LE LP+MVAGVW++D N+QL+ATTQFRKLLSIERSPPI EVIQ+GVVPRF++FL R+DF
Sbjct: 70  KLEHLPSMVAGVWTEDGNLQLEATTQFRKLLSIERSPPIEEVIQAGVVPRFVQFLMREDF 129

Query: 88  PQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDS 147
           PQLQFEAAWALTNIASGTSENT+VVIDHGAVPIFV+LL+SP+DDVREQAVWALGNVAGDS
Sbjct: 130 PQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVQLLASPSDDVREQAVWALGNVAGDS 189

Query: 148 PKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALER 207
           P+CRDLVL NGAL+PLLAQ NE+AKLSMLRNATWTLSNFCRGKPQP F+Q +PALPAL R
Sbjct: 190 PRCRDLVLGNGALLPLLAQLNENAKLSMLRNATWTLSNFCRGKPQPPFDQVKPALPALAR 249

Query: 208 LIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVG 267
           LIHS+D+EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL HPSPSVLIPALRTVG
Sbjct: 250 LIHSDDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVG 309

Query: 268 NIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAG 327
           NIVTGDDMQTQCIINHQALPCLL+LL  NYKKSIKKEACWTISNITAGN  QIQA+IEA 
Sbjct: 310 NIVTGDDMQTQCIINHQALPCLLNLLANNYKKSIKKEACWTISNITAGNKEQIQAVIEAN 369

Query: 328 IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIV 387
           IIGPLVNLL NAEF+IKKEAAWAISNATSGG++EQIK+LVSQGCIKPLCDLL CPDPRIV
Sbjct: 370 IIGPLVNLLQNAEFDIKKEAAWAISNATSGGAHEQIKYLVSQGCIKPLCDLLICPDPRIV 429

Query: 388 TVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKI 447
           TVCLEGLENILK GEA+KN+  TGGVNL+AQ IDDAEGLEKIENLQSHDNTEIYEKAVKI
Sbjct: 430 TVCLEGLENILKVGEADKNVSETGGVNLYAQMIDDAEGLEKIENLQSHDNTEIYEKAVKI 489

Query: 448 LETYWVEEDEDEPLPPGDATQAGFGFAGNGLPVPSGGFNF 487
           LETYW+EE EDE +PPGDA+Q+GF F G    VPSGGFNF
Sbjct: 490 LETYWLEE-EDETMPPGDASQSGFQFGGEAPAVPSGGFNF 528

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356556046|ref|XP_003546338.1| PREDICTED: importin subunit alpha-1-like [Glycine max]

 Score =  824 bits (2128), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/464 (86%), Positives = 431/464 (92%), Gaps = 1/464 (0%)

Query: 24  IIQLQLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLS 83
           I++ +LESLPAMVAGVWSDD + QL+ATTQFRKLLSIERSPPI EVIQ+GVVPRF+EFL 
Sbjct: 68  IVEKKLESLPAMVAGVWSDDNSQQLEATTQFRKLLSIERSPPIEEVIQAGVVPRFVEFLV 127

Query: 84  RDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNV 143
           R+DFPQLQFEAAWALTNIASGTSENT+VVIDHGAVPIFV+LLSSP+DDVREQAVWALGNV
Sbjct: 128 REDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNV 187

Query: 144 AGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALP 203
           AGDSP+CRDLVLS+GAL+PLLAQ NEHAKLSMLRNATWTLSNFCRGKPQP FEQ R ALP
Sbjct: 188 AGDSPRCRDLVLSHGALIPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFEQVRAALP 247

Query: 204 ALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPAL 263
           ALERL+ SND+EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLV+LL HPSPSVLIPAL
Sbjct: 248 ALERLVFSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVQLLLHPSPSVLIPAL 307

Query: 264 RTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAI 323
           RTVGNIVTGDDMQTQ IINH ALPCLL LLT N+KKSIKKEACWTISNITAGN +QIQA+
Sbjct: 308 RTVGNIVTGDDMQTQTIINHGALPCLLSLLTHNHKKSIKKEACWTISNITAGNRDQIQAV 367

Query: 324 IEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPD 383
           IEAG+I PLVNLL NAEF+IKKEAAWAISNATSGG++EQIK+LVSQGCIKPLCDLL CPD
Sbjct: 368 IEAGLIAPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVSQGCIKPLCDLLVCPD 427

Query: 384 PRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEK 443
           PRIVTVCLEGLENILK GEAEK++GNTG VNL+AQ ID+AEGLEKIENLQSHDN EIYEK
Sbjct: 428 PRIVTVCLEGLENILKVGEAEKSLGNTGDVNLYAQMIDEAEGLEKIENLQSHDNNEIYEK 487

Query: 444 AVKILETYWVEEDEDEPLPPGDATQAGFGFAGNGLPVPSGGFNF 487
           AVKILETYW+ ED+DE LP GD  Q GF F  N LPVPSGGFNF
Sbjct: 488 AVKILETYWL-EDDDETLPAGDGAQPGFNFGNNDLPVPSGGFNF 530

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356529274|ref|XP_003533220.1| PREDICTED: importin subunit alpha-1-like [Glycine max]

 Score =  823 bits (2127), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/464 (85%), Positives = 431/464 (92%), Gaps = 1/464 (0%)

Query: 24  IIQLQLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLS 83
           I++ +LESLPAMVAGVWSDD + QL+ATTQFRKLLSIERSPPI EVIQ+GVVPRF+EFL 
Sbjct: 68  IVEKKLESLPAMVAGVWSDDNSQQLEATTQFRKLLSIERSPPIEEVIQAGVVPRFVEFLV 127

Query: 84  RDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNV 143
           R+DFPQLQFEAAWALTNIASGTSENT+VVIDHGAVPIFV+LLSSP+DDVREQAVWALGNV
Sbjct: 128 REDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNV 187

Query: 144 AGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALP 203
           AGDSPKCRDLVLS+GAL+PLLAQ NEHAKLSMLRNATWTLSNFCRGKPQP FEQ R ALP
Sbjct: 188 AGDSPKCRDLVLSHGALIPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFEQVRAALP 247

Query: 204 ALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPAL 263
           ALERL+ SND+EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLV+LL HPSPSVLIPAL
Sbjct: 248 ALERLVFSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVQLLLHPSPSVLIPAL 307

Query: 264 RTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAI 323
           RTVGNIVTGDDMQTQ IINH ALPCLL LLT N+KKSIKKEACWTISNITAGN +QIQA+
Sbjct: 308 RTVGNIVTGDDMQTQTIINHGALPCLLSLLTHNHKKSIKKEACWTISNITAGNRDQIQAV 367

Query: 324 IEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPD 383
           +EAG+I PLVNLL NAEF+IKKEAAWAISNATSGG++EQIK+LVSQGCIKPLCDLL CPD
Sbjct: 368 VEAGLIAPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVSQGCIKPLCDLLVCPD 427

Query: 384 PRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEK 443
           PRIVTVCLEGLENILK GEAEK+MGN+G VNL+AQ ID+AEGLEKIENLQSHDN EIYEK
Sbjct: 428 PRIVTVCLEGLENILKVGEAEKSMGNSGDVNLYAQMIDEAEGLEKIENLQSHDNNEIYEK 487

Query: 444 AVKILETYWVEEDEDEPLPPGDATQAGFGFAGNGLPVPSGGFNF 487
           AVKILETYW+ ED+DE LP GD  Q GF F  N +PVPSGGFNF
Sbjct: 488 AVKILETYWL-EDDDETLPTGDGAQPGFNFGNNDVPVPSGGFNF 530

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224123916|ref|XP_002330241.1| predicted protein [Populus trichocarpa] gi|222871697|gb|EEF08828.1| predicted protein [Populus trichocarpa]

 Score =  823 bits (2126), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/461 (85%), Positives = 434/461 (94%), Gaps = 1/461 (0%)

Query: 28  QLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDF 87
           +LE LP+MVAGVWS+D N+QL+ATTQFRKLLSIERSPPI EVIQ+GVVPRF++FL R+DF
Sbjct: 70  KLEHLPSMVAGVWSEDGNLQLEATTQFRKLLSIERSPPIEEVIQAGVVPRFVQFLMREDF 129

Query: 88  PQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDS 147
           PQLQFEAAWALTNIASGTSENT+VVIDHGAVPIFV+LL SP+DDVREQAVWALGNVAGDS
Sbjct: 130 PQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVQLLGSPSDDVREQAVWALGNVAGDS 189

Query: 148 PKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALER 207
           P+CRDLVL +GAL+PLLAQ NE+AKLSMLRNATWTLSNFCRGKPQP F+Q +PALPAL R
Sbjct: 190 PRCRDLVLGHGALLPLLAQLNENAKLSMLRNATWTLSNFCRGKPQPPFDQVKPALPALAR 249

Query: 208 LIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVG 267
           LIHSND+EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRL+ELL HPSPSVLIPALRTVG
Sbjct: 250 LIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLIELLLHPSPSVLIPALRTVG 309

Query: 268 NIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAG 327
           NIVTGDDMQTQCIINHQ+LPCLL+LLT NYKKSIKKEACWTISNITAGN  QIQA+IEA 
Sbjct: 310 NIVTGDDMQTQCIINHQSLPCLLNLLTNNYKKSIKKEACWTISNITAGNKEQIQAVIEAN 369

Query: 328 IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIV 387
           +IGPLV+LL NAEF+IKKE+AWAISNATSGG++EQIK+LVSQGCIKPLCDLL CPDPRIV
Sbjct: 370 LIGPLVHLLQNAEFDIKKESAWAISNATSGGTHEQIKYLVSQGCIKPLCDLLICPDPRIV 429

Query: 388 TVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKI 447
           TVCLEGLENILK GEA+KN+ +TGGVNL+AQ IDDAEGLEKIENLQSHDN+EIYEKAVKI
Sbjct: 430 TVCLEGLENILKVGEADKNVSDTGGVNLYAQMIDDAEGLEKIENLQSHDNSEIYEKAVKI 489

Query: 448 LETYWVEEDEDEPLPPGDATQAGFGFAGNGLPVPSGGFNFG 488
           LETYW+EED DE +PPGDA+Q+GF F G+   VPSGGFNFG
Sbjct: 490 LETYWLEED-DETMPPGDASQSGFQFGGDAPAVPSGGFNFG 529

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	488
TAIR|locus:2083313	532	IMPA-1 "importin alpha isoform	0.948	0.870	0.769	3.1e-193
TAIR|locus:505006475	535	IMPA-2 "importin alpha isoform	0.956	0.872	0.771	6.5e-193
TAIR|locus:2132238	531	MOS6 "MODIFIER OF SNC1, 6" [Ar	0.940	0.864	0.727	2.7e-180
TAIR|locus:2196140	539	IMPA-6 "importin alpha isoform	0.948	0.858	0.724	5.5e-180
TAIR|locus:2195351	538	IMPA-4 "AT1G09270" [Arabidopsi	0.946	0.858	0.724	1.4e-176
TAIR|locus:2155929	519	IMPA-5 "importin alpha isoform	0.848	0.797	0.649	4.2e-143
ASPGD|ASPL0000045550	553	kapA [Emericella nidulans (tax	0.942	0.831	0.600	9.5e-137
DICTYBASE|DDB_G0272318	516	DDB_G0272318 "putative importi	0.868	0.821	0.625	4.1e-136
TAIR|locus:2078122	528	IMPA-7 "importin alpha isoform	0.858	0.793	0.627	4.1e-136
UNIPROTKB|G4MZS0	551	MGG_15072 "Importin subunit al	0.918	0.813	0.605	1.4e-135

TAIR|locus:2083313 IMPA-1 "importin alpha isoform 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1872 (664.0 bits), Expect = 3.1e-193, P = 3.1e-193
 Identities = 358/465 (76%), Positives = 401/465 (86%)

Query:    25 IQLQLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSR 84
             +  +L+SL  MVAGVWSDD  +QL++TTQFRKLLSIERSPPI EVI +GVVPRF+EFL +
Sbjct:    67 VDKKLDSLKDMVAGVWSDDPALQLESTTQFRKLLSIERSPPIEEVISAGVVPRFVEFLKK 126

Query:    85 DDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVA 144
             +D+P +QFEAAWALTNIASGTS++T+VVIDH AVPIFV+LL+SP+DDVREQAVWALGNVA
Sbjct:   127 EDYPAIQFEAAWALTNIASGTSDHTKVVIDHNAVPIFVQLLASPSDDVREQAVWALGNVA 186

Query:   145 GDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPA 204
             GDSP+CRDLVL  GAL+PLL Q NEHAKLSMLRNATWTLSNFCRGKPQP F+Q +PALPA
Sbjct:   187 GDSPRCRDLVLGCGALLPLLNQLNEHAKLSMLRNATWTLSNFCRGKPQPHFDQVKPALPA 246

Query:   205 LERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALR 264
             LERLIHS+D+EVLTDACWALSYLSDGTNDKIQ VI+AGV P+LVELL H SPSVLIPALR
Sbjct:   247 LERLIHSDDEEVLTDACWALSYLSDGTNDKIQTVIQAGVVPKLVELLLHHSPSVLIPALR 306

Query:   265 TVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXX 324
             TVGNIVTGDD+QTQC+IN  ALPCL +LLTQN+KKSIKKEACWTISNITAGN +      
Sbjct:   307 TVGNIVTGDDIQTQCVINSGALPCLANLLTQNHKKSIKKEACWTISNITAGNKDQIQTVV 366

Query:   325 XXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDP 384
                   PLV+LL NAEF+IKKEAAWAISNATSGGS++QIK+LV QGCIKPLCDLL CPDP
Sbjct:   367 EANLISPLVSLLQNAEFDIKKEAAWAISNATSGGSHDQIKYLVEQGCIKPLCDLLVCPDP 426

Query:   385 RIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKA 444
             RI+TVCLEGLENILK GEAEKN+G+TG +N +AQ IDDAEGLEKIENLQSHDN EIYEKA
Sbjct:   427 RIITVCLEGLENILKVGEAEKNLGHTGDMNYYAQLIDDAEGLEKIENLQSHDNNEIYEKA 486

Query:   445 VKILETYWVXXXXXXXXX--XXXATQAGFGFAGNGLPVPSGGFNF 487
             VKILETYW+               +QAGF F GN  PVPSGGFNF
Sbjct:   487 VKILETYWLEEEDDETQQPPGVDGSQAGFQFGGNQAPVPSGGFNF 531

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=ISS

GO:0005635 "nuclear envelope" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005730 "nucleolus" evidence=IDA

GO:0005618 "cell wall" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0007010 "cytoskeleton organization" evidence=RCA

GO:0010498 "proteasomal protein catabolic process" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

TAIR|locus:505006475 IMPA-2 "importin alpha isoform 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1869 (663.0 bits), Expect = 6.5e-193, P = 6.5e-193
 Identities = 362/469 (77%), Positives = 402/469 (85%)

Query:    20 PMFFIIQLQLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFI 79
             P    ++ +LESLPAMV GVWSDDR++QL+ATTQFRKLLSIERSPPI EVI +GVVPRF+
Sbjct:    67 PASSTVEKKLESLPAMVGGVWSDDRSLQLEATTQFRKLLSIERSPPIEEVIDAGVVPRFV 126

Query:    80 EFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWA 139
             EFL+R+D+PQLQFEAAWALTNIASGTSENT+VVI+HGAVPIFV+LL+S +DDVREQAVWA
Sbjct:   127 EFLTREDYPQLQFEAAWALTNIASGTSENTKVVIEHGAVPIFVQLLASQSDDVREQAVWA 186

Query:   140 LGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTR 199
             LGNVAGDSP+CRDLVL  GAL+PLL+Q NEHAKLSMLRNATWTLSNFCRGKPQP F+Q R
Sbjct:   187 LGNVAGDSPRCRDLVLGQGALIPLLSQLNEHAKLSMLRNATWTLSNFCRGKPQPPFDQVR 246

Query:   200 PALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVL 259
             PALPALERLIHS D+EVLTDACWALSYLSDGTNDKIQ+VIEAGV PRLVELL+H SPSVL
Sbjct:   247 PALPALERLIHSTDEEVLTDACWALSYLSDGTNDKIQSVIEAGVVPRLVELLQHQSPSVL 306

Query:   260 IPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNX 319
             IPALR++GNIVTGDD+QTQC+I+H AL  LL LLT N+KKSIKKEACWTISNITAGN + 
Sbjct:   307 IPALRSIGNIVTGDDLQTQCVISHGALLSLLSLLTHNHKKSIKKEACWTISNITAGNRDQ 366

Query:   320 XXXXXXXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLL 379
                        PLVNLL NAEF+IKKEAAWAISNATSGGS +QIK++V QG +KPLCDLL
Sbjct:   367 IQAVCEAGLICPLVNLLQNAEFDIKKEAAWAISNATSGGSPDQIKYMVEQGVVKPLCDLL 426

Query:   380 NCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTE 439
              CPDPRI+TVCLEGLENILK GEAEK  GNTG VN +AQ IDDAEGLEKIENLQSHDN+E
Sbjct:   427 VCPDPRIITVCLEGLENILKVGEAEKVTGNTGDVNFYAQLIDDAEGLEKIENLQSHDNSE 486

Query:   440 IYEKAVKILETYWVXXXXXXXXXXXXATQAGFGFAG-NGLPVPSGGFNF 487
             IYEKAVKILETYW+            + Q GF F G N   VP GGFNF
Sbjct:   487 IYEKAVKILETYWLEEEDETLPPGDPSAQ-GFQFGGGNDAAVPPGGFNF 534

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006606 "protein import into nucleus" evidence=IEA;ISS

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=IEA;ISS

GO:0005730 "nucleolus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0009407 "toxin catabolic process" evidence=RCA

TAIR|locus:2132238 MOS6 "MODIFIER OF SNC1, 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 1750 (621.1 bits), Expect = 2.7e-180, P = 2.7e-180
 Identities = 336/462 (72%), Positives = 387/462 (83%)

Query:    26 QLQLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRD 85
             QL+ ++LPAMVAG+WS+D N QL+AT   RKLLSIE++PPINEV+QSGVVPR ++FLSRD
Sbjct:    72 QLK-DNLPAMVAGIWSEDSNSQLEATNLLRKLLSIEQNPPINEVVQSGVVPRVVKFLSRD 130

Query:    86 DFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAG 145
             DFP+LQFEAAWALTNIASGTSENT V+I+ GAVPIF++LLSS ++DVREQAVWALGNVAG
Sbjct:   131 DFPKLQFEAAWALTNIASGTSENTNVIIESGAVPIFIQLLSSASEDVREQAVWALGNVAG 190

Query:   146 DSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPAL 205
             DSPKCRDLVLS GA+ PLL+QFNE+ KLSMLRNATWTLSNFCRGKP P FEQT+PALP L
Sbjct:   191 DSPKCRDLVLSYGAMTPLLSQFNENTKLSMLRNATWTLSNFCRGKPPPAFEQTQPALPVL 250

Query:   206 ERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT 265
             ERL+ S D+EVLTDACWALSYLSD +NDKIQAVIEAGV PRL++LL H SPSVLIPALRT
Sbjct:   251 ERLVQSMDEEVLTDACWALSYLSDNSNDKIQAVIEAGVVPRLIQLLGHSSPSVLIPALRT 310

Query:   266 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXX 325
             +GNIVTGDD+QTQ +++ QALPCLL+LL  NYKKSIKKEACWTISNITAGN +       
Sbjct:   311 IGNIVTGDDLQTQMVLDQQALPCLLNLLKNNYKKSIKKEACWTISNITAGNADQIQAVID 370

Query:   326 XXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPR 385
                   LV +L +AEFE+KKEAAW ISNATSGG+++QIKF+VSQGCIKPLCDLL CPD +
Sbjct:   371 AGIIQSLVWVLQSAEFEVKKEAAWGISNATSGGTHDQIKFMVSQGCIKPLCDLLTCPDLK 430

Query:   386 IVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAV 445
             +VTVCLE LENIL  GEAEKN+G+TG  NL+AQ ID+AEGLEKIENLQSHDN +IY+KAV
Sbjct:   431 VVTVCLEALENILVVGEAEKNLGHTGEDNLYAQMIDEAEGLEKIENLQSHDNNDIYDKAV 490

Query:   446 KILETYWVXXXXXXXXXXXXATQAGFGFAGNGLPVPSGGFNF 487
             KILET+W             A Q+GF F      VP G FNF
Sbjct:   491 KILETFWTEDNEEEGNDENHAPQSGFQFGSTN--VPPGQFNF 530

GO:0005634 "nucleus" evidence=IEA;IDA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=IEA;ISS

GO:0006952 "defense response" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

GO:0006342 "chromatin silencing" evidence=RCA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0034968 "histone lysine methylation" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2196140 IMPA-6 "importin alpha isoform 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 1747 (620.0 bits), Expect = 5.5e-180, P = 5.5e-180
 Identities = 339/468 (72%), Positives = 389/468 (83%)

Query:    26 QLQLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRD 85
             + +LE++  M+AGV S+DR++QL+AT  FR+LLSIER+PPINEV+QSGVVP  ++FLSRD
Sbjct:    72 ETRLENIQQMIAGVMSEDRDLQLEATASFRRLLSIERNPPINEVVQSGVVPHIVQFLSRD 131

Query:    86 DFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAG 145
             DF QLQFEAAWALTNIASGTSENTRV+ID GAVP+FV+LLSS +++VREQAVWALGNVAG
Sbjct:   132 DFTQLQFEAAWALTNIASGTSENTRVIIDSGAVPLFVKLLSSASEEVREQAVWALGNVAG 191

Query:   146 DSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQ-TRPALPA 204
             DSPKCRD VLS  A+M LLAQF+EH+KLSMLRNATWTLSNFCRGKPQP FEQ T+ ALPA
Sbjct:   192 DSPKCRDHVLSCEAMMSLLAQFHEHSKLSMLRNATWTLSNFCRGKPQPAFEQQTKAALPA 251

Query:   205 LERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALR 264
             LERL+HS D+EVLTDA WALSYLSDGTN+KIQ VI+AGV PRLV+LL HPSPSVLIPALR
Sbjct:   252 LERLLHSTDEEVLTDASWALSYLSDGTNEKIQTVIDAGVIPRLVQLLAHPSPSVLIPALR 311

Query:   265 TVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXX 324
             T+GNIVTGDD+QTQ +I+ QALP LL+LL   YKKSIKKEACWTISNITAGN +      
Sbjct:   312 TIGNIVTGDDIQTQAVISSQALPGLLNLLKNTYKKSIKKEACWTISNITAGNTSQIQEVF 371

Query:   325 XXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDP 384
                   PL+NLL   EFEIKKEA WAISNATSGG+++QIKFLVSQGCI+PLCDLL CPDP
Sbjct:   372 QAGIIRPLINLLEIGEFEIKKEAVWAISNATSGGNHDQIKFLVSQGCIRPLCDLLPCPDP 431

Query:   385 RIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKA 444
             R+VTV LEGLENILK GEAEKN+GNTG  NL+AQ I+DA+GL+KIENLQSHDN EIYEKA
Sbjct:   432 RVVTVTLEGLENILKVGEAEKNLGNTGNDNLYAQMIEDADGLDKIENLQSHDNNEIYEKA 491

Query:   445 VKILETYWVXXXXXXXXXXXXATQ----AGFGFAGNGLPVPSGGFNFG 488
             VKILE+YW             A +    +GF F       P+GGFNFG
Sbjct:   492 VKILESYWAADDEEEDIGGVDAPENVQSSGFQFGNQSGNAPTGGFNFG 539

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=IEA;ISS

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0006260 "DNA replication" evidence=RCA

GO:0006306 "DNA methylation" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0007067 "mitosis" evidence=RCA

GO:0007129 "synapsis" evidence=RCA

GO:0007131 "reciprocal meiotic recombination" evidence=RCA

GO:0008283 "cell proliferation" evidence=RCA

GO:0010564 "regulation of cell cycle process" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

TAIR|locus:2195351 IMPA-4 "AT1G09270" [Arabidopsis thaliana (taxid:3702)]

 Score = 1715 (608.8 bits), Expect = 1.4e-176, P = 1.4e-176
 Identities = 337/465 (72%), Positives = 381/465 (81%)

Query:    25 IQLQLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSR 84
             ++ +LE +P MV GV+SDD   QL+ATTQFRKLLSIERSPPI+EVI++GV+PRF+EFL R
Sbjct:    74 VEKRLEGIPMMVQGVYSDDPQAQLEATTQFRKLLSIERSPPIDEVIKAGVIPRFVEFLGR 133

Query:    85 DDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVA 144
              D PQLQFEAAWALTN+ASGTS++TRVVI+ GAVPIFV+LL+S +DDVREQAVWALGNVA
Sbjct:   134 HDHPQLQFEAAWALTNVASGTSDHTRVVIEQGAVPIFVKLLTSASDDVREQAVWALGNVA 193

Query:   145 GDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPA 204
             GDSP CR+LVL+ GAL PLLAQ NE++KLSMLRNATWTLSNFCRGKP   FEQ +PALP 
Sbjct:   194 GDSPNCRNLVLNYGALEPLLAQLNENSKLSMLRNATWTLSNFCRGKPPTPFEQVKPALPI 253

Query:   205 LERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALR 264
             L +LI+ ND+EVLTDACWALSYLSDG NDKIQAVIEAGVCPRLVELL H SP+VLIPALR
Sbjct:   254 LRQLIYLNDEEVLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLGHQSPTVLIPALR 313

Query:   265 TVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXX 324
             TVGNIVTGDD QTQ II    LP L +LLTQN+KKSIKKEACWTISNITAGN        
Sbjct:   314 TVGNIVTGDDSQTQFIIESGVLPHLYNLLTQNHKKSIKKEACWTISNITAGNKLQIEAVV 373

Query:   325 XXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDP 384
                   PLV+LL NAEF+IKKEAAWAISNATSGGS+EQI++LV+QGCIKPLCDLL CPDP
Sbjct:   374 GAGIILPLVHLLQNAEFDIKKEAAWAISNATSGGSHEQIQYLVTQGCIKPLCDLLICPDP 433

Query:   385 RIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKA 444
             RIVTVCLEGLENILK GEA+K MG   GVNL+AQ I++++GL+K+ENLQSHDN EIYEKA
Sbjct:   434 RIVTVCLEGLENILKVGEADKEMGLNSGVNLYAQIIEESDGLDKVENLQSHDNNEIYEKA 493

Query:   445 VKILETYWVXXXXXXXXXXXXA--TQAGFGFAGNGLPVPSGGFNF 487
             VKILE YW                +Q  F F GN    P GGF F
Sbjct:   494 VKILERYWAEEEEEQILQDGGNDNSQQAFNF-GNNPAAPVGGFKF 537

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS;RCA

GO:0008565 "protein transporter activity" evidence=IEA;ISS

GO:0030581 "symbiont intracellular protein transport in host" evidence=IPI

GO:0080034 "host response to induction by symbiont of tumor, nodule or growth in host" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0006007 "glucose catabolic process" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006820 "anion transport" evidence=RCA

GO:0006862 "nucleotide transport" evidence=RCA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0015696 "ammonium transport" evidence=RCA

GO:0015802 "basic amino acid transport" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043090 "amino acid import" evidence=RCA

GO:0043269 "regulation of ion transport" evidence=RCA

TAIR|locus:2155929 IMPA-5 "importin alpha isoform 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 1399 (497.5 bits), Expect = 4.2e-143, P = 4.2e-143
 Identities = 271/417 (64%), Positives = 329/417 (78%)

Query:    35 MVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEA 94
             M+ GV+SDD ++QL+ TT+FR +LS +RSPP + VI+SGVVPRF+EFL +DD P+LQFEA
Sbjct:    75 MITGVFSDDPSLQLEYTTRFRVVLSFDRSPPTDNVIKSGVVPRFVEFLKKDDNPKLQFEA 134

Query:    95 AWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLV 154
             AWALTNIASG SE+T+VVIDHG VP+FV+LL+SP DDVREQA+W LGNVAGDS +CRD V
Sbjct:   135 AWALTNIASGASEHTKVVIDHGVVPLFVQLLASPDDDVREQAIWGLGNVAGDSIQCRDFV 194

Query:   155 LSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDD 214
             L++GA +PLL Q N HA LS+LRNATWTLSNF RGKP P F+  +  LP L+RL++S+D+
Sbjct:   195 LNSGAFIPLLHQLNNHATLSILRNATWTLSNFFRGKPSPPFDLVKHVLPVLKRLVYSDDE 254

Query:   215 EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDD 274
             +VL DACWALS LSD +N+ IQ+VIEAGV PRLVELL+H SP VL+PALR +GNIV+G+ 
Sbjct:   255 QVLIDACWALSNLSDASNENIQSVIEAGVVPRLVELLQHASPVVLVPALRCIGNIVSGNS 314

Query:   275 MQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXXXXXXXPLVN 334
              QT C+IN   LP L DLLTQN+ + I++EACWTISNITAG                LVN
Sbjct:   315 QQTHCVINCGVLPVLADLLTQNHMRGIRREACWTISNITAGLEEQIQSVIDANLIPSLVN 374

Query:   335 LLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGL 394
             L  +AEF+IKKEA WAISNA+ GGS  QIK+LV Q CIK LCD+L CPD RI+ V L GL
Sbjct:   375 LAQHAEFDIKKEAIWAISNASVGGSPNQIKYLVEQNCIKALCDILVCPDLRIILVSLGGL 434

Query:   395 ENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETY 451
             E IL AGE +KN+ +   VN ++Q I+DAEGLEKIENLQ H N EIYEKAVKIL+TY
Sbjct:   435 EMILIAGEVDKNLRD---VNCYSQMIEDAEGLEKIENLQHHGNNEIYEKAVKILQTY 488

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=IEA;ISS

GO:0009407 "toxin catabolic process" evidence=RCA

ASPGD|ASPL0000045550 kapA [Emericella nidulans (taxid:162425)]

 Score = 1339 (476.4 bits), Expect = 9.5e-137, P = 9.5e-137
 Identities = 281/468 (60%), Positives = 334/468 (71%)

Query:    26 QLQLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRD 85
             +L +E LP MV GV+SD    Q+ ATT+FRKLLS ER+PPI  VI++GVV RF+EFL R 
Sbjct:    79 ELNVE-LPEMVKGVFSDQIEAQIQATTKFRKLLSKERNPPIERVIETGVVSRFVEFL-RS 136

Query:    86 DFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAG 145
                 +QFEAAWALTNIASG+++ T+VVI+ GAVPIFV LLSSP  DVREQAVWALGN+AG
Sbjct:   137 PHTLVQFEAAWALTNIASGSAQQTQVVIEAGAVPIFVELLSSPEPDVREQAVWALGNIAG 196

Query:   146 DSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPA 204
             DSP+CRD VL+ GAL PLL   N+  K+SMLRNATWTLSNFCRGK PQP +    PALP 
Sbjct:   197 DSPQCRDFVLNAGALRPLLTLINDGRKISMLRNATWTLSNFCRGKTPQPDWNTIAPALPV 256

Query:   205 LERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALR 264
             L +LI+  DDEVL DACWA+SYLSDG N+KIQAVIEAG+  RLVELL H S SV  PALR
Sbjct:   257 LAKLIYMLDDEVLIDACWAISYLSDGPNEKIQAVIEAGIPRRLVELLMHASTSVQTPALR 316

Query:   265 TVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXX 324
             +VGNIVTGDD+QTQ IIN  ALP LL LL+   K  I+KEACWTISNITAGN +      
Sbjct:   317 SVGNIVTGDDVQTQVIINCGALPALLSLLSST-KDGIRKEACWTISNITAGNSSQIQSVI 375

Query:   325 XXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSN--EQIKFLVSQGCIKPLCDLLNCP 382
                   PLV+LL N +F+ +KEA WAISNATSGG    +QI++LV+QGCIKPLCDLL CP
Sbjct:   376 DAGIIPPLVHLLANGDFKTRKEACWAISNATSGGLQKPDQIRYLVTQGCIKPLCDLLACP 435

Query:   383 DPRIVTVCLEGLENILKAGEAEKNMGNTGG-VNLFAQAIDDAEGLEKIENLQSHDNTEIY 441
             D +I+ V L+GLENILK GE +K  G     VN +A  I++A G+EKI + Q++ N EIY
Sbjct:   436 DNKIIQVALDGLENILKVGEMDKEAGQGDAHVNRYALFIEEAGGMEKIHDCQNNANEEIY 495

Query:   442 EKAVKILETYWVXXXXXXXXXXXXATQ-AGFGFAGNGLPVPSGGFNFG 488
              KA  I+E Y+             A Q    GF         GGF+FG
Sbjct:   496 MKAYNIIEKYFSDEDEAAGDIDELAPQQTQTGFTLGATQQQPGGFSFG 543

GO:0006606 "protein import into nucleus" evidence=IMP

GO:0005635 "nuclear envelope" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0030674 "protein binding, bridging" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005643 "nuclear pore" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

GO:0030261 "chromosome condensation" evidence=IEA

GO:0033554 "cellular response to stress" evidence=IEA

GO:0000087 "M phase of mitotic cell cycle" evidence=IEA

GO:0007346 "regulation of mitotic cell cycle" evidence=IEA

DICTYBASE|DDB_G0272318 DDB_G0272318 "putative importin subunit alpha B" [Dictyostelium discoideum (taxid:44689)]

 Score = 1333 (474.3 bits), Expect = 4.1e-136, P = 4.1e-136
 Identities = 269/430 (62%), Positives = 333/430 (77%)

Query:    24 IIQLQLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLS 83
             +I  +LE LP++VA + S++ ++ L +TT FRKLLSIE+SPPI EVI++G+VPR ++FL 
Sbjct:    61 LINQRLEQLPSLVAEINSENPDLILKSTTAFRKLLSIEKSPPIEEVIKTGIVPRLVKFLY 120

Query:    84 RDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNV 143
               DFPQLQFEAAWALTNIASGT E TRVVI++GA+ +FV LLSSP DDVREQAVWALGN+
Sbjct:   121 MQDFPQLQFEAAWALTNIASGTPEQTRVVIENGAIQVFVLLLSSPHDDVREQAVWALGNI 180

Query:   144 AGDSPKCRDLVLSNGALMPLLAQFNEHA--KLSMLRNATWTLSNFCRGKPQPLFEQTRPA 201
             AGDS  CRDLVLS+ AL PLL+     A  K+SM+RNATWTLSNFCRGKPQP FE  R +
Sbjct:   181 AGDSHYCRDLVLSHNALPPLLSLLQNPAAIKVSMVRNATWTLSNFCRGKPQPPFEIVRAS 240

Query:   202 LPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIP 261
             LP L +LI+  D+EVL DACWALSYLSDG+N++IQ VI+A VC ++VELL HP+ +V  P
Sbjct:   241 LPVLAKLIYYQDEEVLIDACWALSYLSDGSNERIQEVIDAKVCRKMVELLGHPTIAVQTP 300

Query:   262 ALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXX 321
             ALRT+GNIVTGDD QTQ +++ QAL  LL+LL Q+ K++I+KEACWTISNITAG+ N   
Sbjct:   301 ALRTIGNIVTGDDNQTQIVLSVQALSHLLNLL-QSPKRAIRKEACWTISNITAGDKNQIQ 359

Query:   322 XXXXXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNC 381
                       LV LL NAEFEI+KEAAWAISNATS G+ +QI FLVSQGC+KPLCDLL  
Sbjct:   360 QVIDANIIPSLVYLLANAEFEIQKEAAWAISNATSCGTPQQIHFLVSQGCVKPLCDLLKV 419

Query:   382 PDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIY 441
              DPRI+ V LEG+ENIL AG+ E  +    GVN + + I+DA+GL KI +LQ H N + +
Sbjct:   420 SDPRIINVALEGIENILVAGKKEAQVT---GVNPYKKIIEDADGLGKIYDLQHHMNKDTF 476

Query:   442 EKAVKILETY 451
             EK  +I+ TY
Sbjct:   477 EKVSRIISTY 486

GO:0008565 "protein transporter activity" evidence=IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005635 "nuclear envelope" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

TAIR|locus:2078122 IMPA-7 "importin alpha isoform 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 1333 (474.3 bits), Expect = 4.1e-136, P = 4.1e-136
 Identities = 268/427 (62%), Positives = 321/427 (75%)

Query:    35 MVAGVWSDDRNIQLDATTQFRKLLSIER-SPPINEVIQSGVVPRFIEFLSRDDFPQLQFE 93
             +++ +WSD+R++ ++ATTQ R LL  E  +  + EVIQ+G+VPRF+EFL+ DD PQLQFE
Sbjct:    64 LISCIWSDERDLLIEATTQIRTLLCGEMFNVRVEEVIQAGLVPRFVEFLTWDDSPQLQFE 123

Query:    94 AAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDL 153
             AAWALTNIASGTSENT VVIDHGAV I VRLL+SP D VREQ VWALGN++GDSP+CRD+
Sbjct:   124 AAWALTNIASGTSENTEVVIDHGAVAILVRLLNSPYDVVREQVVWALGNISGDSPRCRDI 183

Query:   154 VLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSND 213
             VL + AL  LL Q N  AKLSML NA WTLSN CRGKPQP F+Q   ALPAL +LI  +D
Sbjct:   184 VLGHAALPSLLLQLNHGAKLSMLVNAAWTLSNLCRGKPQPPFDQVSAALPALAQLIRLDD 243

Query:   214 DEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGD 273
              E+L   CWAL YLSDG+N+KIQAVIEA VC RL+ L  H SPSV+ PALRT+GNIVTG+
Sbjct:   244 KELLAYTCWALVYLSDGSNEKIQAVIEANVCARLIGLSIHRSPSVITPALRTIGNIVTGN 303

Query:   274 DMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXXXXXXXPLV 333
             D QTQ II+ QALPCL++LL  +Y K+I+KEACWT+SNITAG  +             LV
Sbjct:   304 DSQTQHIIDLQALPCLVNLLRGSYNKTIRKEACWTVSNITAGCQSQIQAVFDADICPALV 363

Query:   334 NLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEG 393
             NLL N+E ++KKEAAWAI NA +GGS +QI FLV Q CIKPLCDLL C D ++V VCLE 
Sbjct:   364 NLLQNSEGDVKKEAAWAICNAIAGGSYKQIMFLVKQECIKPLCDLLTCSDTQLVMVCLEA 423

Query:   394 LENILKAGEAEKNMGNTG-------GVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVK 446
             L+ ILK GE   +    G        VN  AQ I++AEGLEKIE LQSH+N +IYE AVK
Sbjct:   424 LKKILKVGEVFSSRHAEGIYQCPQTNVNPHAQLIEEAEGLEKIEGLQSHENNDIYETAVK 483

Query:   447 ILETYWV 453
             ILETYW+
Sbjct:   484 ILETYWM 490

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=IEA;ISS

UNIPROTKB|G4MZS0 MGG_15072 "Importin subunit alpha" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 1328 (472.5 bits), Expect = 1.4e-135, P = 1.4e-135
 Identities = 279/461 (60%), Positives = 330/461 (71%)

Query:    30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQ 89
             E LP MV GV+S+  + Q+ ATT+FRKLLS ER+PPI EVI++GVV RF+EFL R     
Sbjct:    81 EDLPQMVQGVFSESIDAQIQATTKFRKLLSKERNPPIEEVIKTGVVSRFVEFL-RSPHTL 139

Query:    90 LQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK 149
             +QFEAAWALTNIASG++  T+VVI+ GAVPIFV LL SP  DVREQAVWALGN+AGDSP+
Sbjct:   140 VQFEAAWALTNIASGSATQTQVVIEAGAVPIFVELLGSPEPDVREQAVWALGNIAGDSPQ 199

Query:   150 CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERL 208
             CRD VLS GAL PLL    +  KLSMLRNATWTLSNFCRGK PQP +    PALP L +L
Sbjct:   200 CRDYVLSCGALKPLLNLLGDSRKLSMLRNATWTLSNFCRGKTPQPDWTTIAPALPVLAKL 259

Query:   209 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN 268
             ++S DDEVL DACWA+SYLSDG+NDKIQAVIEAG+  RLVELL H S SV  PALR+VGN
Sbjct:   260 VYSLDDEVLIDACWAISYLSDGSNDKIQAVIEAGIPRRLVELLMHASTSVQTPALRSVGN 319

Query:   269 IVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXXXXX 328
             IVTGDD+QTQ IIN  ALPCLL LL  N K  I+KEACWTISNITAGN            
Sbjct:   320 IVTGDDVQTQVIINCGALPCLLSLLGSN-KDGIRKEACWTISNITAGNSAQIQSVVDANI 378

Query:   329 XXPLVNLLLNAEFEIKKEAAWAISNATSGGSN--EQIKFLVSQGCIKPLCDLLNCPDPRI 386
               PL++LL N + + +KEA WAISNATSGG    +QI++LV+QGCIKPLCDLL+CPD +I
Sbjct:   379 IPPLIHLLSNGDLKTRKEACWAISNATSGGLQKPDQIRYLVAQGCIKPLCDLLSCPDNKI 438

Query:   387 VTVCLEGLENILKAGEAEKNMGNTG--GVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKA 444
             + V L+GLENILK G+ +K     G   +N +A  I++  G+EKI   Q++ N EIY KA
Sbjct:   439 IQVALDGLENILKVGDLDKQAAGEGQDSINRYALFIEECGGMEKIHECQTNANEEIYMKA 498

Query:   445 VKILETYWVXXXXXXXXXXXXATQAG-FGFAGNGLPVPSGG 484
               I+E Y+                 G FGF GN    PSGG
Sbjct:   499 FNIIEKYFSDDDENADDAAPAQGPNGTFGF-GN----PSGG 534

GO:0005575 "cellular_component" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O35345	IMA7_MOUSE	No assigned EC number	0.6085	0.8954	0.8152	yes	no
Q19969	IMA3_CAEEL	No assigned EC number	0.4672	0.8975	0.8521	yes	no
Q5RBV0	IMA7_PONAB	No assigned EC number	0.6063	0.8954	0.8152	yes	no
O04294	IMA2_ARATH	No assigned EC number	0.7554	0.9344	0.8587	no	no
Q02821	IMA1_YEAST	No assigned EC number	0.5617	0.9344	0.8413	yes	no
Q96321	IMA1_ARATH	No assigned EC number	0.8	0.9487	0.8703	yes	no
O94374	IMA2_SCHPO	No assigned EC number	0.5520	0.9344	0.8460	yes	no
Q76P29	IMAB_DICDI	No assigned EC number	0.6269	0.9077	0.8585	yes	no
O22478	IMA_SOLLC	No assigned EC number	0.8221	0.9364	0.8671	N/A	no
O60684	IMA7_HUMAN	No assigned EC number	0.6063	0.8954	0.8152	yes	no
Q0V7M0	IMA7_BOVIN	No assigned EC number	0.6085	0.8954	0.8152	yes	no
Q71VM4	IMA1A_ORYSJ	No assigned EC number	0.8525	0.8872	0.8231	no	no
Q9SLX0	IMA1B_ORYSJ	No assigned EC number	0.8060	0.9467	0.8651	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	488
COG5064	526	COG5064, SRP1, Karyopherin (importin) alpha [Intra	0.0
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	9e-33
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	1e-31
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	8e-23
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	2e-21
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	6e-21
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	7e-10
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	7e-10
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	1e-09
pfam13513	55	pfam13513, HEAT_EZ, HEAT-like repeat	1e-08
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	4e-08
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	1e-07
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	1e-07
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	3e-07
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	8e-07
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	1e-06
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	2e-06
pfam13646	88	pfam13646, HEAT_2, HEAT repeats	2e-06
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	3e-06
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	4e-06
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	2e-05
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	6e-05
pfam04826	254	pfam04826, Arm_2, Armadillo-like	1e-04
pfam01602	522	pfam01602, Adaptin_N, Adaptin N terminal region	2e-04
COG1413	335	COG1413, COG1413, FOG: HEAT repeat [Energy product	2e-04
pfam13646	88	pfam13646, HEAT_2, HEAT repeats	4e-04
COG5116	926	COG5116, RPN2, 26S proteasome regulatory complex c	5e-04
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	7e-04
pfam13513	55	pfam13513, HEAT_EZ, HEAT-like repeat	7e-04
pfam01749	97	pfam01749, IBB, Importin beta binding domain	7e-04
pfam13513	55	pfam13513, HEAT_EZ, HEAT-like repeat	0.001
pfam13646	88	pfam13646, HEAT_2, HEAT repeats	0.001

>gnl|CDD|227396 COG5064, SRP1, Karyopherin (importin) alpha [Intracellular trafficking and secretion]

 Score =  566 bits (1461), Expect = 0.0
 Identities = 261/465 (56%), Positives = 322/465 (69%), Gaps = 9/465 (1%)

Query: 26  QLQLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRD 85
           Q     LP +   ++SDD   QL A  +FRKLLS E SPPI  VI +GVVPRF+EF+   
Sbjct: 67  QQFYSELPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEI 126

Query: 86  DFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAG 145
               LQFEAAWALTNIASGT++ T+VV+D GAVP+F++LLSS  DDVREQAVWALGN+AG
Sbjct: 127 QRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAG 186

Query: 146 DSPKCRDLVLSNGALMPLLAQFNEHA-KLSMLRNATWTLSNFCRGK-PQPLFEQTRPALP 203
           DS  CRD VL  GAL PLL      A  +SMLRNATWTLSN CRGK P P +     ALP
Sbjct: 187 DSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALP 246

Query: 204 ALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPAL 263
            L +LI+S D EVL DACWA+SYLSDG N+KIQAV++ G+  RLVELL H S  +  PAL
Sbjct: 247 ILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPAL 306

Query: 264 RTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAI 323
           R+VGNIVTG D QTQ IIN  AL     LL+ + K++I+KEACWTISNITAGN  QIQA+
Sbjct: 307 RSVGNIVTGSDDQTQVIINCGALKAFRSLLS-SPKENIRKEACWTISNITAGNTEQIQAV 365

Query: 324 IEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSN--EQIKFLVSQGCIKPLCDLLNC 381
           I+A +I PL++LL +AE++IKKEA WAISNATSGG N  + I++LVSQG IKPLCDLL+ 
Sbjct: 366 IDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDV 425

Query: 382 PDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIY 441
            D +I+ V L+ +ENILK GE ++       +N++A  ++ A G++ I  LQ   N  IY
Sbjct: 426 VDNKIIEVALDAIENILKVGEQDRLR-YGKNINIYAVYVEKAGGMDAIHGLQDSVNRTIY 484

Query: 442 EKAVKILETYWVEEDEDEPLPPGDATQAGFGFAGNGLPVPSGGFN 486
           +KA  I+E ++ EED  + L P  A    F F  N      G FN
Sbjct: 485 DKAYSIIEKFFGEEDAVDELAPETAGNT-FTFGSN--VNQQGNFN 526

Length = 526

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score =  120 bits (303), Expect = 9e-33
 Identities = 43/121 (35%), Positives = 70/121 (57%), Gaps = 2/121 (1%)

Query: 68  EVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS 127
            VIQ+G +P  +  LS  D   +Q EAAWAL+N+++G ++N + V++ G +P  V+LL S
Sbjct: 2   AVIQAGGLPALVSLLSSSDEN-VQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKS 60

Query: 128 PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFC 187
             ++V + A+WAL N+A      + +VL  G + P L    + +   + +NAT  LSN  
Sbjct: 61  EDEEVVKAALWALRNLAAGPEDNKLIVLEAGGV-PKLVNLLDSSNEDIQKNATGALSNLA 119

Query: 188 R 188
            
Sbjct: 120 S 120

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score =  117 bits (296), Expect = 1e-31
 Identities = 44/114 (38%), Positives = 66/114 (57%), Gaps = 1/114 (0%)

Query: 201 ALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLI 260
            LPAL  L+ S+D+ V  +A WALS LS G ND IQAV+EAG  P LV+LL+     V+ 
Sbjct: 8   GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVK 67

Query: 261 PALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA 314
            AL  + N+  G +     ++    +P L++LL  +  + I+K A   +SN+ +
Sbjct: 68  AALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSS-NEDIQKNATGALSNLAS 120

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 93.1 bits (232), Expect = 8e-23
 Identities = 38/132 (28%), Positives = 65/132 (49%), Gaps = 13/132 (9%)

Query: 321 QAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLN 380
           +A+I+AG +  LV+LL +++  +++EAAWA+SN ++G +N+ I+ +V  G +  L  LL 
Sbjct: 1   EAVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAG-NNDNIQAVVEAGGLPALVQLLK 59

Query: 381 CPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEI 440
             D  +V   L  L N+              G       + +A G+ K+ NL    N +I
Sbjct: 60  SEDEEVVKAALWALRNL------------AAGPEDNKLIVLEAGGVPKLVNLLDSSNEDI 107

Query: 441 YEKAVKILETYW 452
            + A   L    
Sbjct: 108 QKNATGALSNLA 119

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 88.9 bits (221), Expect = 2e-21
 Identities = 38/118 (32%), Positives = 67/118 (56%), Gaps = 2/118 (1%)

Query: 280 IINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA 339
           +I    LP L+ LL+ +  +++++EA W +SN++AGN + IQA++EAG +  LV LL + 
Sbjct: 3   VIQAGGLPALVSLLSSS-DENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE 61

Query: 340 EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENI 397
           + E+ K A WA+ N  +G  +     ++  G +  L +LL+  +  I       L N+
Sbjct: 62  DEEVVKAALWALRNLAAGPED-NKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNL 118

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 87.8 bits (218), Expect = 6e-21
 Identities = 40/117 (34%), Positives = 66/117 (56%), Gaps = 2/117 (1%)

Query: 28  QLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDF 87
           Q   LPA+V+ + S D N+Q +A      L S   +  I  V+++G +P  ++ L  +D 
Sbjct: 5   QAGGLPALVSLLSSSDENVQREAAWALSNL-SAGNNDNIQAVVEAGGLPALVQLLKSED- 62

Query: 88  PQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVA 144
            ++   A WAL N+A+G  +N  +V++ G VP  V LL S  +D+++ A  AL N+A
Sbjct: 63  EEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 54.0 bits (131), Expect = 7e-10
 Identities = 22/40 (55%), Positives = 31/40 (77%)

Query: 105 TSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVA 144
           + EN + VI+ GAVP  V+LLSSP ++V+E+A WAL N+A
Sbjct: 1   SPENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNLA 40

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 54.0 bits (131), Expect = 7e-10
 Identities = 16/40 (40%), Positives = 25/40 (62%)

Query: 105 TSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVA 144
             EN + V+D G +P  V LL S  ++V ++A WAL N++
Sbjct: 1   DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 52.8 bits (128), Expect = 1e-09
 Identities = 19/41 (46%), Positives = 29/41 (70%)

Query: 316 NVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS 356
           +    QA+IEAG + PLV LL + + E+++EAAWA+SN  +
Sbjct: 1   SPENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNLAA 41

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|205691 pfam13513, HEAT_EZ, HEAT-like repeat

 Score = 50.5 bits (121), Expect = 1e-08
 Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 1/56 (1%)

Query: 88  PQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNV 143
            +++  AA AL  +A G  E  R  +    +P  + LL    D+VRE A WALG +
Sbjct: 1   WEVREAAALALGALAGGGPELLRPAVPE-LLPALLPLLKDDDDEVREAAAWALGRI 55

The HEAT repeat family is related to armadillo/beta-catenin-like repeats (see pfam00514). These EZ repeats are found in subunits of cyanobacterial phycocyanin lyase and other proteins and probably carry out a scaffolding role. Length = 55

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 49.0 bits (118), Expect = 4e-08
 Identities = 16/41 (39%), Positives = 21/41 (51%)

Query: 231 TNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVT 271
           + +  QAVIEAG  P LV+LL  P   V   A   + N+  
Sbjct: 1   SPENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNLAA 41

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 47.8 bits (115), Expect = 1e-07
 Identities = 14/40 (35%), Positives = 22/40 (55%)

Query: 231 TNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIV 270
            ++  QAV++AG  P LVELL+     V+  A   + N+ 
Sbjct: 1   DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 47.4 bits (114), Expect = 1e-07
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 1/42 (2%)

Query: 62  RSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIAS 103
                  V+ +G +P  +E L  +D  ++  EAAWAL+N++S
Sbjct: 1   DDENKQAVVDAGGLPALVELLKSED-EEVVKEAAWALSNLSS 41

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 46.7 bits (112), Expect = 3e-07
 Identities = 17/41 (41%), Positives = 26/41 (63%), Gaps = 1/41 (2%)

Query: 63  SPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIAS 103
                 VI++G VP  ++ LS  D  ++Q EAAWAL+N+A+
Sbjct: 2   PENKQAVIEAGAVPPLVQLLSSPD-EEVQEEAAWALSNLAA 41

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 45.1 bits (108), Expect = 8e-07
 Identities = 18/38 (47%), Positives = 27/38 (71%)

Query: 319 QIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS 356
             QA+++AG +  LV LL + + E+ KEAAWA+SN +S
Sbjct: 4   NKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 44.8 bits (107), Expect = 1e-06
 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 1/42 (2%)

Query: 273 DDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA 314
                Q +I   A+P L+ LL+    + +++EA W +SN+ A
Sbjct: 1   SPENKQAVIEAGAVPPLVQLLSSP-DEEVQEEAAWALSNLAA 41

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 44.3 bits (106), Expect = 2e-06
 Identities = 10/39 (25%), Positives = 17/39 (43%)

Query: 359 SNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENI 397
            +E  + +V  G +  L +LL   D  +V      L N+
Sbjct: 1   DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNL 39

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|222285 pfam13646, HEAT_2, HEAT repeats

 Score = 45.4 bits (108), Expect = 2e-06
 Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 11/73 (15%)

Query: 75  VPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVRE 134
           +   +E L  D  P+++  AA AL  +            D  A+P  + LL  P  +VR 
Sbjct: 1   LEALLEALLSDPDPEVRAAAARALGELG-----------DPEALPALLELLKDPDPEVRR 49

Query: 135 QAVWALGNVAGDS 147
            A  ALG +    
Sbjct: 50  AAAEALGKLGDPE 62

This family includes multiple HEAT repeats. Length = 88

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 43.6 bits (104), Expect = 3e-06
 Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 1/42 (2%)

Query: 273 DDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA 314
           DD   Q +++   LP L++LL    ++ + KEA W +SN+++
Sbjct: 1   DDENKQAVVDAGGLPALVELLKSEDEE-VVKEAAWALSNLSS 41

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 43.2 bits (103), Expect = 4e-06
 Identities = 11/39 (28%), Positives = 18/39 (46%)

Query: 359 SNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENI 397
           S E  + ++  G + PL  LL+ PD  +       L N+
Sbjct: 1   SPENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNL 39

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 41.7 bits (99), Expect = 2e-05
 Identities = 14/29 (48%), Positives = 20/29 (68%)

Query: 201 ALPALERLIHSNDDEVLTDACWALSYLSD 229
           A+P L +L+ S D+EV  +A WALS L+ 
Sbjct: 13  AVPPLVQLLSSPDEEVQEEAAWALSNLAA 41

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 39.7 bits (94), Expect = 6e-05
 Identities = 16/29 (55%), Positives = 20/29 (68%)

Query: 201 ALPALERLIHSNDDEVLTDACWALSYLSD 229
            LPAL  L+ S D+EV+ +A WALS LS 
Sbjct: 13  GLPALVELLKSEDEEVVKEAAWALSNLSS 41

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|218281 pfam04826, Arm_2, Armadillo-like

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 37/117 (31%), Positives = 53/117 (45%), Gaps = 8/117 (6%)

Query: 279 CIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN 338
            ++    L  LL LL       I + A  T+ N  A + NQ   I + G I  + NLL N
Sbjct: 7   DVLEPHDLQKLLALLESTEDPFIHEIALITLGNSAAYSFNQ-DIIRDLGGIPIIANLLSN 65

Query: 339 AEFEIKKEAAWAISNATSGGSN-EQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGL 394
              EIK++A  A++N +    N ++IK  V+Q C   +   LN        V L GL
Sbjct: 66  PNPEIKEKALNALNNLSVNVENQKKIKVYVNQVCEDIVSSPLNSA------VQLAGL 116

This domain contains armadillo-like repeats. Proteins containing this domain interact with numerous other proteins, through these interactions they are involved in a wide variety of processes including carcinogenesis, control of cellular ageing and survival, regulation of circadian rhythm and lysosomal sorting of G protein-coupled receptors. Length = 254

>gnl|CDD|216598 pfam01602, Adaptin_N, Adaptin N terminal region

 Score = 43.8 bits (104), Expect = 2e-04
 Identities = 64/309 (20%), Positives = 108/309 (34%), Gaps = 50/309 (16%)

Query: 112 VIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAG-DSPKCRDLV--LSNGALMPLLAQFN 168
           ++    VP    LLS     V   AV  L  +   D      L+  L    L  LL   N
Sbjct: 147 LVRDFLVPELKELLSDKDPGVVSAAVALLYEIRKNDRLYLNKLLPLLVR-RLCNLLTVCN 205

Query: 169 EHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLS 228
              ++ +LR     L+ +    P+      +  L  +  L+ ++++ VL +A   + +L 
Sbjct: 206 PWLQVKILR----LLTRYAPQDPRE----PKELLEDILNLLQNSNNAVLYEAVKTIIHL- 256

Query: 229 DGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGD-------DMQTQCII 281
           D   + I   + A     L  LL  P  ++   ALR +  I+          D+   C+ 
Sbjct: 257 DPEPELIVLAVNA-----LGRLLSSPDENLRYVALRNLNKILEKHPPAVQHLDLIIFCLK 311

Query: 282 NHQ-------ALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQ--IQAIIEAGI---- 328
                     AL  L  L+ ++  K I KE    +S I         ++AI         
Sbjct: 312 TDDDISIRLRALDLLYKLVDESNVKEIVKELLKYVSEIADPEFKIKLVKAIGRLAEKFPT 371

Query: 329 -----IGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLL-NCP 382
                I  L+ LL  A   +  E    I +        + ++++       LC+LL +  
Sbjct: 372 DAEWCIDVLLELLSLAGSYVVDEIVEVIRDIIRKYPELR-EYILEH-----LCELLEDIE 425

Query: 383 DPRIVTVCL 391
            P      L
Sbjct: 426 SPEARAAAL 434

This family consists of the N terminal region of various alpha, beta and gamma subunits of the AP-1, AP-2 and AP-3 adaptor protein complexes. The adaptor protein (AP) complexes are involved in the formation of clathrin-coated pits and vesicles. The N-terminal region of the various adaptor proteins (APs) is constant by comparison to the C-terminal which is variable within members of the AP-2 family; and it has been proposed that this constant region interacts with another uniform component of the coated vesicles. Length = 522

>gnl|CDD|224331 COG1413, COG1413, FOG: HEAT repeat [Energy production and conversion]

 Score = 43.0 bits (101), Expect = 2e-04
 Identities = 62/314 (19%), Positives = 94/314 (29%), Gaps = 64/314 (20%)

Query: 74  VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVR 133
                ++ L  +D   ++  AA AL  + S             AVP+   LLS     VR
Sbjct: 44  AADELLKLLEDEDLL-VRLSAAVALGELGSEE-----------AVPLLRELLSDEDPRVR 91

Query: 134 EQAVWALGNVAGDSPKCRDLV--LSN--------------------GALMPLLAQFNEHA 171
           + A  ALG + GD      LV  L N                     AL PLL    +  
Sbjct: 92  DAAADALGEL-GDPEAVPPLVELLENDENEGVRAAAARALGKLGDERALDPLLEALQDED 150

Query: 172 KLSMLRNATWTLSNFCRGKPQPLFE-QTRPALPALERLIHSNDDEVLTDACWALSYLSDG 230
             S        L +      + L E     A+P L  L+   D +V      A S L   
Sbjct: 151 SGSAAAALDAALLDVRAAAAEALGELGDPEAIPLLIELLEDEDADVR---RAAASALGQL 207

Query: 231 TNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQC----------- 279
            ++ ++A         LV+ L   S  V   AL  +G I   + +               
Sbjct: 208 GSENVEAA------DLLVKALSDESLEVRKAALLALGEIGDEEAVDALAKALEDEDVILA 261

Query: 280 --------IINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGP 331
                    ++       L LL  +   +++ EA   +  I          +        
Sbjct: 262 LLAAAALGALDLAEAALPLLLLLIDEANAVRLEAALALGQIGQEKAVAALLLALEDGDAD 321

Query: 332 LVNLLLNAEFEIKK 345
           +    L     I K
Sbjct: 322 VRKAALILLEGIDK 335

Length = 335

>gnl|CDD|222285 pfam13646, HEAT_2, HEAT repeats

 Score = 38.9 bits (91), Expect = 4e-04
 Identities = 31/108 (28%), Positives = 43/108 (39%), Gaps = 22/108 (20%)

Query: 203 PALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPA 262
             LE L+   D EV   A  AL  L D               P L+ELL+ P P V   A
Sbjct: 3   ALLEALLSDPDPEVRAAAARALGELGD-----------PEALPALLELLKDPDPEVRRAA 51

Query: 263 LRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTIS 310
              +G +  GD          +ALP LL+LL  +    ++  A   ++
Sbjct: 52  AEALGKL--GDP---------EALPALLELLQDDDDAVVRAAAASALA 88

This family includes multiple HEAT repeats. Length = 88

>gnl|CDD|227446 COG5116, RPN2, 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

 Score = 42.6 bits (100), Expect = 5e-04
 Identities = 41/158 (25%), Positives = 57/158 (36%), Gaps = 21/158 (13%)

Query: 78  FIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAV 137
           +I  L  D    L++   ++L     GT  N  VV     +   V   S   DDVR  AV
Sbjct: 520 YINELLYDKDSILRYNGVFSLALAYVGTG-NLGVVST--LLHYAV---SDGNDDVRRAAV 573

Query: 138 WALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQ 197
            ALG V      C D  L  G +  L    N H +          L   C G        
Sbjct: 574 IALGFVC-----CDDRDLLVGTVELLSESHNFHVRAG----VAVALGIACAGT------G 618

Query: 198 TRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKI 235
            + A   LE L++  +D V   A  A+  +    N ++
Sbjct: 619 DKVATDILEALMYDTNDFVRQSAMIAVGMILMQCNPEL 656

Length = 926

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 37.0 bits (87), Expect = 7e-04
 Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 1/42 (2%)

Query: 147 SPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR 188
           SP+ +  V+  GA+ P L Q        +   A W LSN   
Sbjct: 1   SPENKQAVIEAGAV-PPLVQLLSSPDEEVQEEAAWALSNLAA 41

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|205691 pfam13513, HEAT_EZ, HEAT-like repeat

 Score = 37.4 bits (87), Expect = 7e-04
 Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 2/55 (3%)

Query: 132 VREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNF 186
           VRE A  ALG +AG  P    L  +   L+P L    +     +   A W L   
Sbjct: 3   VREAAALALGALAGGGP--ELLRPAVPELLPALLPLLKDDDDEVREAAAWALGRI 55

The HEAT repeat family is related to armadillo/beta-catenin-like repeats (see pfam00514). These EZ repeats are found in subunits of cyanobacterial phycocyanin lyase and other proteins and probably carry out a scaffolding role. Length = 55

>gnl|CDD|201951 pfam01749, IBB, Importin beta binding domain

 Score = 38.5 bits (90), Expect = 7e-04
 Identities = 13/37 (35%), Positives = 13/37 (35%)

Query: 17 PMDPMFFIIQLQLESLPAMVAGVWSDDRNIQLDATTQ 53
                         LP MV GV SDD   QL AT  
Sbjct: 61 SELDGSSDADQLSLELPVMVQGVNSDDPENQLSATQA 97

This family consists of the importin alpha (karyopherin alpha), importin beta (karyopherin beta) binding domain. The domain mediates formation of the importin alpha beta complex; required for classical NLS import of proteins into the nucleus, through the nuclear pore complex and across the nuclear envelope. Also in the alignment is the NLS of importin alpha which overlaps with the IBB domain. Length = 97

>gnl|CDD|205691 pfam13513, HEAT_EZ, HEAT-like repeat

 Score = 36.7 bits (85), Expect = 0.001
 Identities = 18/51 (35%), Positives = 22/51 (43%)

Query: 177 RNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYL 227
             A   L     G P+ L       LPAL  L+  +DDEV   A WAL  +
Sbjct: 5   EAAALALGALAGGGPELLRPAVPELLPALLPLLKDDDDEVREAAAWALGRI 55

The HEAT repeat family is related to armadillo/beta-catenin-like repeats (see pfam00514). These EZ repeats are found in subunits of cyanobacterial phycocyanin lyase and other proteins and probably carry out a scaffolding role. Length = 55

>gnl|CDD|222285 pfam13646, HEAT_2, HEAT repeats

 Score = 37.7 bits (88), Expect = 0.001
 Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 13/69 (18%)

Query: 74  VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDD-V 132
            +P  +E L +D  P+++  AA AL  +            D  A+P  + LL    D  V
Sbjct: 32  ALPALLELL-KDPDPEVRRAAAEALGKLG-----------DPEALPALLELLQDDDDAVV 79

Query: 133 REQAVWALG 141
           R  A  AL 
Sbjct: 80  RAAAASALA 88

This family includes multiple HEAT repeats. Length = 88

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	488
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	100.0
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	100.0
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	100.0
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	100.0
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	100.0
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	100.0
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	100.0
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	100.0
PF05804	708	KAP: Kinesin-associated protein (KAP)	99.95
PF05804	708	KAP: Kinesin-associated protein (KAP)	99.94
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	99.87
KOG1048	717	consensus Neural adherens junction protein Plakoph	99.83
KOG1048	717	consensus Neural adherens junction protein Plakoph	99.81
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.8
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.79
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	99.79
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	99.78
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	99.76
KOG1222	791	consensus Kinesin associated protein KAP [Intracel	99.74
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	99.73
KOG4199	461	consensus Uncharacterized conserved protein [Funct	99.73
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	99.72
KOG1222	791	consensus Kinesin associated protein KAP [Intracel	99.7
KOG4199	461	consensus Uncharacterized conserved protein [Funct	99.69
KOG1293	678	consensus Proteins containing armadillo/beta-caten	99.69
KOG1293	678	consensus Proteins containing armadillo/beta-caten	99.66
PRK09687	280	putative lyase; Provisional	99.66
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	99.66
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	99.66
PRK09687	280	putative lyase; Provisional	99.66
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	99.63
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.59
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	99.57
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	99.54
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	99.51
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.51
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	99.49
PTZ00429	746	beta-adaptin; Provisional	99.48
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	99.48
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	99.44
PTZ00429	746	beta-adaptin; Provisional	99.44
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	99.44
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	99.43
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	99.4
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	99.35
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	99.34
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	99.3
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	99.2
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	99.16
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	99.15
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	99.13
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	99.12
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	99.12
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	99.11
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	99.09
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	99.06
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	99.05
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	99.05
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	99.04
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	99.03
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	99.03
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	99.0
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	98.97
KOG1824	1233	consensus TATA-binding protein-interacting protein	98.96
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	98.94
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	98.94
KOG1242	569	consensus Protein containing adaptin N-terminal re	98.93
KOG1824	1233	consensus TATA-binding protein-interacting protein	98.87
KOG0212	675	consensus Uncharacterized conserved protein [Funct	98.86
KOG0211	759	consensus Protein phosphatase 2A regulatory subuni	98.85
KOG0212	675	consensus Uncharacterized conserved protein [Funct	98.85
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	98.85
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	98.84
KOG3678	832	consensus SARM protein (with sterile alpha and arm	98.82
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	98.81
PF05536	543	Neurochondrin: Neurochondrin	98.79
KOG1058	948	consensus Vesicle coat complex COPI, beta subunit	98.76
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	98.76
KOG2973	353	consensus Uncharacterized conserved protein [Funct	98.72
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	98.71
KOG3678	832	consensus SARM protein (with sterile alpha and arm	98.7
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	98.69
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	98.69
KOG4413	524	consensus 26S proteasome regulatory complex, subun	98.68
KOG1242	569	consensus Protein containing adaptin N-terminal re	98.68
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	98.62
KOG4413	524	consensus 26S proteasome regulatory complex, subun	98.62
KOG2973	353	consensus Uncharacterized conserved protein [Funct	98.6
COG5369	743	Uncharacterized conserved protein [Function unknow	98.59
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	98.59
KOG2259	823	consensus Uncharacterized conserved protein [Funct	98.58
TIGR02270	410	conserved hypothetical protein. Members are found	98.58
KOG0915	1702	consensus Uncharacterized conserved protein [Funct	98.53
COG5369	743	Uncharacterized conserved protein [Function unknow	98.52
KOG4646	173	consensus Uncharacterized conserved protein, conta	98.51
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	98.49
TIGR02270	410	conserved hypothetical protein. Members are found	98.46
KOG2259	823	consensus Uncharacterized conserved protein [Funct	98.46
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	98.46
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	98.42
COG5231	432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	98.38
COG1413	335	FOG: HEAT repeat [Energy production and conversion	98.38
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	98.36
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	98.34
KOG0211	759	consensus Protein phosphatase 2A regulatory subuni	98.33
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	98.26
KOG0915	1702	consensus Uncharacterized conserved protein [Funct	98.25
COG1413	335	FOG: HEAT repeat [Energy production and conversion	98.23
KOG4646	173	consensus Uncharacterized conserved protein, conta	98.22
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	98.2
COG5231	432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	98.19
KOG2062	929	consensus 26S proteasome regulatory complex, subun	98.17
COG5096	757	Vesicle coat complex, various subunits [Intracellu	98.16
PF05536	543	Neurochondrin: Neurochondrin	98.12
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	98.11
PF10165	446	Ric8: Guanine nucleotide exchange factor synembryn	98.1
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	98.09
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	98.08
KOG4535	728	consensus HEAT and armadillo repeat-containing pro	98.03
KOG2734	536	consensus Uncharacterized conserved protein [Funct	98.02
KOG1943	1133	consensus Beta-tubulin folding cofactor D [Posttra	98.01
KOG1943	1133	consensus Beta-tubulin folding cofactor D [Posttra	97.98
KOG2734	536	consensus Uncharacterized conserved protein [Funct	97.98
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	97.97
COG5096	757	Vesicle coat complex, various subunits [Intracellu	97.92
KOG1991	1010	consensus Nuclear transport receptor RANBP7/RANBP8	97.92
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	97.91
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	97.91
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	97.9
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	97.9
KOG2274	1005	consensus Predicted importin 9 [Intracellular traf	97.89
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	97.85
KOG1991	1010	consensus Nuclear transport receptor RANBP7/RANBP8	97.79
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	97.78
KOG4535	728	consensus HEAT and armadillo repeat-containing pro	97.71
KOG1058	948	consensus Vesicle coat complex COPI, beta subunit	97.69
KOG1078	865	consensus Vesicle coat complex COPI, gamma subunit	97.68
KOG1078	865	consensus Vesicle coat complex COPI, gamma subunit	97.64
KOG1020	1692	consensus Sister chromatid cohesion protein SCC2/N	97.64
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	97.62
PF10165	446	Ric8: Guanine nucleotide exchange factor synembryn	97.57
KOG1967	1030	consensus DNA repair/transcription protein Mms19 [	97.55
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	97.55
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	97.55
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	97.55
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	97.51
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	97.51
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	97.51
KOG2274	1005	consensus Predicted importin 9 [Intracellular traf	97.45
KOG2062	929	consensus 26S proteasome regulatory complex, subun	97.44
KOG0567	289	consensus HEAT repeat-containing protein [General	97.42
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	97.41
PF05004	309	IFRD: Interferon-related developmental regulator (	97.4
PF11841	160	DUF3361: Domain of unknown function (DUF3361)	97.39
COG5116	926	RPN2 26S proteasome regulatory complex component [	97.36
PF11841	160	DUF3361: Domain of unknown function (DUF3361)	97.32
PF05004	309	IFRD: Interferon-related developmental regulator (	97.32
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	97.32
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	97.3
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	97.27
KOG0567	289	consensus HEAT repeat-containing protein [General	97.25
KOG4653	982	consensus Uncharacterized conserved protein [Funct	97.2
KOG2032	533	consensus Uncharacterized conserved protein [Funct	97.19
KOG2032	533	consensus Uncharacterized conserved protein [Funct	97.14
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	97.12
KOG1967	1030	consensus DNA repair/transcription protein Mms19 [	97.1
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	97.08
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	97.08
PF06025	379	DUF913: Domain of Unknown Function (DUF913); Inter	97.08
KOG3036	293	consensus Protein involved in cell differentiation	97.04
COG5656	970	SXM1 Importin, protein involved in nuclear import	97.03
KOG4653	982	consensus Uncharacterized conserved protein [Funct	97.02
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	97.01
KOG2025	892	consensus Chromosome condensation complex Condensi	96.98
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	96.97
PF04078	262	Rcd1: Cell differentiation family, Rcd1-like ; Int	96.87
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	96.84
KOG0414	1251	consensus Chromosome condensation complex Condensi	96.8
PRK14707	2710	hypothetical protein; Provisional	96.78
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	96.76
KOG0414	1251	consensus Chromosome condensation complex Condensi	96.71
KOG2956	516	consensus CLIP-associating protein [General functi	96.67
PF13764	802	E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	96.67
KOG3036	293	consensus Protein involved in cell differentiation	96.66
KOG2956	516	consensus CLIP-associating protein [General functi	96.51
PF04078	262	Rcd1: Cell differentiation family, Rcd1-like ; Int	96.49
KOG1949	1005	consensus Uncharacterized conserved protein [Funct	96.49
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	96.48
KOG1243	690	consensus Protein kinase [General function predict	96.45
PF11864	464	DUF3384: Domain of unknown function (DUF3384); Int	96.37
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	96.34
KOG1243	690	consensus Protein kinase [General function predict	96.31
PF07814	361	WAPL: Wings apart-like protein regulation of heter	96.31
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	96.21
KOG1566	342	consensus Conserved protein Mo25 [Function unknown	96.21
KOG1820	815	consensus Microtubule-associated protein [Cytoskel	96.09
COG5098	1128	Chromosome condensation complex Condensin, subunit	96.09
PF08045	257	CDC14: Cell division control protein 14, SIN compo	96.05
PF11864	464	DUF3384: Domain of unknown function (DUF3384); Int	96.0
PF01603	409	B56: Protein phosphatase 2A regulatory B subunit (	95.97
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	95.9
KOG1020	1692	consensus Sister chromatid cohesion protein SCC2/N	95.85
PRK14707	2710	hypothetical protein; Provisional	95.77
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	95.77
KOG1525	1266	consensus Sister chromatid cohesion complex Cohesi	95.72
COG5656	970	SXM1 Importin, protein involved in nuclear import	95.71
PF08045	257	CDC14: Cell division control protein 14, SIN compo	95.65
KOG1820	815	consensus Microtubule-associated protein [Cytoskel	95.62
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	95.62
COG5116	926	RPN2 26S proteasome regulatory complex component [	95.52
KOG1993	978	consensus Nuclear transport receptor KAP120 (impor	95.48
PF11707	330	Npa1: Ribosome 60S biogenesis N-terminal; InterPro	95.43
KOG1566	342	consensus Conserved protein Mo25 [Function unknown	95.4
PF11865	160	DUF3385: Domain of unknown function (DUF3385); Int	95.39
PF01603	409	B56: Protein phosphatase 2A regulatory B subunit (	95.36
KOG1993	978	consensus Nuclear transport receptor KAP120 (impor	95.33
PF14500	262	MMS19_N: Dos2-interacting transcription regulator	95.32
PF14668	73	RICTOR_V: Rapamycin-insensitive companion of mTOR,	95.32
PF14500	262	MMS19_N: Dos2-interacting transcription regulator	95.31
PF13764	802	E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	95.26
COG5098	1128	Chromosome condensation complex Condensin, subunit	95.26
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	95.24
PF12530	234	DUF3730: Protein of unknown function (DUF3730) ; I	95.21
KOG0413	1529	consensus Uncharacterized conserved protein relate	95.16
KOG2611	698	consensus Neurochondrin/leucine-rich protein (Neur	95.0
PF07814	361	WAPL: Wings apart-like protein regulation of heter	94.99
PF13251	182	DUF4042: Domain of unknown function (DUF4042)	94.96
COG5218	885	YCG1 Chromosome condensation complex Condensin, su	94.92
PF14668	73	RICTOR_V: Rapamycin-insensitive companion of mTOR,	94.86
KOG2999	713	consensus Regulator of Rac1, required for phagocyt	94.85
PF01347	618	Vitellogenin_N: Lipoprotein amino terminal region;	94.79
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	94.76
PF06025	379	DUF913: Domain of Unknown Function (DUF913); Inter	94.74
KOG1949	1005	consensus Uncharacterized conserved protein [Funct	94.49
KOG2611	698	consensus Neurochondrin/leucine-rich protein (Neur	94.39
KOG1525	1266	consensus Sister chromatid cohesion complex Cohesi	94.04
PF11707	330	Npa1: Ribosome 60S biogenesis N-terminal; InterPro	94.0
KOG2025	892	consensus Chromosome condensation complex Condensi	94.0
PF08506	370	Cse1: Cse1; InterPro: IPR013713 The exchange of ma	93.93
KOG2999	713	consensus Regulator of Rac1, required for phagocyt	93.91
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	93.78
KOG2137	700	consensus Protein kinase [Signal transduction mech	93.77
PF03378	435	CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I	93.75
KOG1992	960	consensus Nuclear export receptor CSE1/CAS (import	93.73
PF10363	92	DUF2435: Protein of unknown function (DUF2435)	93.59
PF13251	182	DUF4042: Domain of unknown function (DUF4042)	93.51
PF04063	192	DUF383: Domain of unknown function (DUF383); Inter	93.48
PF11865	160	DUF3385: Domain of unknown function (DUF3385); Int	93.37
COG5209	315	RCD1 Uncharacterized protein involved in cell diff	93.27
PF12530	234	DUF3730: Protein of unknown function (DUF3730) ; I	92.79
PF03378	435	CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I	92.72
PF12830	187	Nipped-B_C: Sister chromatid cohesion C-terminus	92.66
PF08167	165	RIX1: rRNA processing/ribosome biogenesis	92.62
COG5209	315	RCD1 Uncharacterized protein involved in cell diff	92.54
smart00638	574	LPD_N Lipoprotein N-terminal Domain.	92.54
PF04063	192	DUF383: Domain of unknown function (DUF383); Inter	92.51
PF12231	372	Rif1_N: Rap1-interacting factor 1 N terminal; Inte	92.51
KOG2933	334	consensus Uncharacterized conserved protein [Funct	92.45
KOG0413	1529	consensus Uncharacterized conserved protein relate	92.39
KOG2933	334	consensus Uncharacterized conserved protein [Funct	92.39
PLN03076	1780	ARF guanine nucleotide exchange factor (ARF-GEF);	92.37
KOG0891	2341	consensus DNA-dependent protein kinase [Replicatio	92.35
KOG2137	700	consensus Protein kinase [Signal transduction mech	92.28
cd03567	139	VHS_GGA VHS domain family, GGA subfamily; GGA (Gol	92.24
PF08324	268	PUL: PUL domain; InterPro: IPR013535 The PUL (afte	92.08
cd03572	122	ENTH_epsin_related ENTH domain, Epsin Related fami	92.04
PLN03076	1780	ARF guanine nucleotide exchange factor (ARF-GEF);	92.04
PF08506	370	Cse1: Cse1; InterPro: IPR013713 The exchange of ma	91.87
PF10363	92	DUF2435: Protein of unknown function (DUF2435)	91.74
PF14726	98	RTTN_N: Rotatin, an armadillo repeat protein, cent	91.74
cd03569	142	VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s	91.66
PF14225	262	MOR2-PAG1_C: Cell morphogenesis C-terminal	91.59
KOG1822	2067	consensus Uncharacterized conserved protein [Funct	91.3
cd03568	144	VHS_STAM VHS domain family, STAM subfamily; member	91.29
cd03568	144	VHS_STAM VHS domain family, STAM subfamily; member	91.01
PF01347	618	Vitellogenin_N: Lipoprotein amino terminal region;	91.0
KOG1788	2799	consensus Uncharacterized conserved protein [Funct	90.74
cd03569	142	VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s	90.74
KOG1992	960	consensus Nuclear export receptor CSE1/CAS (import	90.65
smart00288	133	VHS Domain present in VPS-27, Hrs and STAM. Unpubl	90.54
COG5218	885	YCG1 Chromosome condensation complex Condensin, su	90.4
smart00638	574	LPD_N Lipoprotein N-terminal Domain.	90.34
PF08167	165	RIX1: rRNA processing/ribosome biogenesis	89.97
cd03561	133	VHS VHS domain family; The VHS domain is present i	89.89
PF13001	501	Ecm29: Proteasome stabiliser; InterPro: IPR024372	89.68
PF04388	668	Hamartin: Hamartin protein; InterPro: IPR007483 Th	89.22
cd03567	139	VHS_GGA VHS domain family, GGA subfamily; GGA (Gol	88.96
PF12726	727	SEN1_N: SEN1 N terminal; InterPro: IPR024481 The y	88.94
cd03561	133	VHS VHS domain family; The VHS domain is present i	88.88
cd03572	122	ENTH_epsin_related ENTH domain, Epsin Related fami	88.51
PF12231	372	Rif1_N: Rap1-interacting factor 1 N terminal; Inte	88.26
PF10521	282	DUF2454: Protein of unknown function (DUF2454); In	87.78
KOG1410	1082	consensus Nuclear transport receptor RanBP16 (impo	87.66
smart00288	133	VHS Domain present in VPS-27, Hrs and STAM. Unpubl	87.28
PF12463	303	DUF3689: Protein of unknown function (DUF3689) ; I	87.24
KOG1988	970	consensus Uncharacterized conserved protein [Funct	86.7
PF12830	187	Nipped-B_C: Sister chromatid cohesion C-terminus	86.45
KOG1848	1610	consensus Uncharacterized conserved protein [Funct	86.17
PF12074	339	DUF3554: Domain of unknown function (DUF3554); Int	86.04
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	85.89
KOG1822	2067	consensus Uncharacterized conserved protein [Funct	85.8
PF04869	312	Uso1_p115_head: Uso1 / p115 like vesicle tethering	85.79
PF12031	257	DUF3518: Domain of unknown function (DUF3518); Int	85.63
PF14726	98	RTTN_N: Rotatin, an armadillo repeat protein, cent	85.31
KOG2199	462	consensus Signal transducing adaptor protein STAM/	85.13
KOG0392	1549	consensus SNF2 family DNA-dependent ATPase domain-	84.83
cd03565	141	VHS_Tom1 VHS domain family, Tom1 subfamily; The VH	84.68
PF13001	501	Ecm29: Proteasome stabiliser; InterPro: IPR024372	84.67
PF14225	262	MOR2-PAG1_C: Cell morphogenesis C-terminal	84.23
KOG1788	2799	consensus Uncharacterized conserved protein [Funct	83.53
PF12726	727	SEN1_N: SEN1 N terminal; InterPro: IPR024481 The y	83.47
PF12031	257	DUF3518: Domain of unknown function (DUF3518); Int	83.28
PF10274	183	ParcG: Parkin co-regulated protein; InterPro: IPR0	83.21
PF00790	140	VHS: VHS domain; InterPro: IPR002014 The VHS domai	82.7
PF00790	140	VHS: VHS domain; InterPro: IPR002014 The VHS domai	82.48
KOG0889	3550	consensus Histone acetyltransferase SAGA, TRRAP/TR	82.32
KOG4464	532	consensus Signaling protein RIC-8/synembryn (regul	82.27
PF10521	282	DUF2454: Protein of unknown function (DUF2454); In	81.86
PF10274	183	ParcG: Parkin co-regulated protein; InterPro: IPR0	80.46

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.9e-62  Score=454.99  Aligned_cols=447  Identities=68%  Similarity=1.076  Sum_probs=418.9

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh
Q 011328           30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT  109 (488)
Q Consensus        30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~  109 (488)
                      ...+.++..+.|++++.+..+...++++++.+..++++.++..|++|.+++.|...+++.++..|+|+|.|+++++.+..
T Consensus        66 ~~~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T  145 (514)
T KOG0166|consen   66 SNLELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQT  145 (514)
T ss_pred             hhhHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhc
Confidence            34778899999999999999999999999999888899999999999999999877669999999999999999999999


Q ss_pred             HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcC
Q 011328          110 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG  189 (488)
Q Consensus       110 ~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~  189 (488)
                      ..+++.|.++.+++++.+++..+++.|.|+|+|++.+++.+|+.+++.|++.+|+.++..+....+.+++.|+|+|||++
T Consensus       146 ~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrg  225 (514)
T KOG0166|consen  146 KVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRG  225 (514)
T ss_pred             cccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcC
Confidence            99999999999999999999999999999999999999999999999999999999996555568999999999999999


Q ss_pred             C-CCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhH
Q 011328          190 K-PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN  268 (488)
Q Consensus       190 ~-~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~  268 (488)
                      . |.........++|.|..++.+.|+++...++|++++++.+..+.++.+++.|+++.|+.+|.+.++.++..|+++++|
T Consensus       226 k~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGN  305 (514)
T KOG0166|consen  226 KNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGN  305 (514)
T ss_pred             CCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccc
Confidence            8 888888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHH
Q 011328          269 IVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAA  348 (488)
Q Consensus       269 l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~  348 (488)
                      ++.+++.+.+.+++.++++.|..++...+...+|++|+|+++|++.++.++++.+++.|++|.|+++|+..+.++|++|+
T Consensus       306 IvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAa  385 (514)
T KOG0166|consen  306 IVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAA  385 (514)
T ss_pred             eeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHH
Confidence            99999999999999999999999999554778999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHH
Q 011328          349 WAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEK  428 (488)
Q Consensus       349 ~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~  428 (488)
                      |+++|++..+++++..+|.+.|+++.|+++|.-.|.++...++.++.++++.++.......    |++...++++||+++
T Consensus       386 waIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~~~~~~----n~~~~~IEe~ggldk  461 (514)
T KOG0166|consen  386 WAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGEAEKNRGT----NPLAIMIEEAGGLDK  461 (514)
T ss_pred             HHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHHhccccc----cHHHHHHHHccChhH
Confidence            9999999999999999999999999999999999999999999999999999887654211    779999999999999


Q ss_pred             HHHhhcCCCHHHHHHHHHHHHHhcCCCCCCCC-CCCCCCCCCccccCCCCCCCCCCCCcC
Q 011328          429 IENLQSHDNTEIYEKAVKILETYWVEEDEDEP-LPPGDATQAGFGFAGNGLPVPSGGFNF  487 (488)
Q Consensus       429 L~~l~~~~~~~v~~~a~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  487 (488)
                      ++.|++|.|.+++++|..++++||..|+|++. .|+..    +|+|.+++   |+|+|||
T Consensus       462 iE~LQ~hen~~Iy~~A~~II~~yf~~e~~~~~~~~~~~----~~~~~~~~---~~~~f~f  514 (514)
T KOG0166|consen  462 IENLQSHENEEIYKKAYKIIDTYFSEEDDEDDQQPTTS----QFTFQVQA---PDGGFNF  514 (514)
T ss_pred             HHHhhccccHHHHHHHHHHHHHhcCCCccccccccccc----ccccCCCC---CCCCCCC
Confidence            99999999999999999999999999855443 34333    89988884   9999998

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=100.00  E-value=6.3e-60  Score=406.80  Aligned_cols=441  Identities=57%  Similarity=0.907  Sum_probs=406.7

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh
Q 011328           30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT  109 (488)
Q Consensus        30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~  109 (488)
                      +-+|.+.+.|.|+|.+.+..|..-++++++.+..++++.+++.|++|.+++++.+....-.+..|+|+|.|+++++....
T Consensus        71 ~elp~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QT  150 (526)
T COG5064          71 SELPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQT  150 (526)
T ss_pred             hhhHHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccce
Confidence            46799999999999999999999999999999999999999999999999999655436789999999999999888888


Q ss_pred             HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhccc-ccHhHHHHHHHHHHHhhc
Q 011328          110 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEH-AKLSMLRNATWTLSNFCR  188 (488)
Q Consensus       110 ~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~~v~~~a~~~L~~l~~  188 (488)
                      ..+++.|.+|.++++|.+.+.++++.+.|+|+|++.+++.+|+.++..|++++++.++..+ .+.++.+++.|+|+|||+
T Consensus       151 kvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcR  230 (526)
T COG5064         151 KVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCR  230 (526)
T ss_pred             EEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhC
Confidence            8899999999999999999999999999999999999999999999999999999999533 245889999999999999


Q ss_pred             CC-CCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHh
Q 011328          189 GK-PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVG  267 (488)
Q Consensus       189 ~~-~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~  267 (488)
                      +. |...-......+|.|.+++.+.|+++...|+|++++++..+.+.++.+++.|+.+.|+++|.+++..++..|++.++
T Consensus       231 GknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vG  310 (526)
T COG5064         231 GKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVG  310 (526)
T ss_pred             CCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhc
Confidence            98 77777788999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHH
Q 011328          268 NIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEA  347 (488)
Q Consensus       268 ~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a  347 (488)
                      |+..+++.+.+.++..|+++.+..+|.++ ...+|++|||+++|+..++.++++.+++.+++|.|+.+|...+..++++|
T Consensus       311 NIVTG~D~QTqviI~~G~L~a~~~lLs~~-ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEA  389 (526)
T COG5064         311 NIVTGSDDQTQVIINCGALKAFRSLLSSP-KENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEA  389 (526)
T ss_pred             CeeecCccceehheecccHHHHHHHhcCh-hhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999 88999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhccCC--CHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhcc
Q 011328          348 AWAISNATSGG--SNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEG  425 (488)
Q Consensus       348 ~~aL~~l~~~~--~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~  425 (488)
                      |||+.|..+++  .++..++|.++|++++|+++|+-.+.++.+.++.++.++++.++..... .....|.|...+++.||
T Consensus       390 CWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk~Ge~d~~~-~~~nin~ya~~vE~Agg  468 (526)
T COG5064         390 CWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILKVGEQDRLR-YGKNINIYAVYVEKAGG  468 (526)
T ss_pred             HHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCccchhhhHHHHHHHHhhhhHHHHh-ccCCccHHHHHHHhccc
Confidence            99999999876  5789999999999999999999999999999999999999988766543 23456778999999999


Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCCCC-CCCCCCCCCccccC
Q 011328          426 LEKIENLQSHDNTEIYEKAVKILETYWVEEDEDEP-LPPGDATQAGFGFA  474 (488)
Q Consensus       426 ~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~  474 (488)
                      ++.+..++++.|.+++.+|..++++||.+|+.=|| +|+-.-  .-|+|.
T Consensus       469 md~I~~~Q~s~n~~iy~KAYsIIe~fFgeeD~vd~lapet~g--~tftfg  516 (526)
T COG5064         469 MDAIHGLQDSVNRTIYDKAYSIIEKFFGEEDAVDELAPETAG--NTFTFG  516 (526)
T ss_pred             HHHHHHhhhccccHHHHHHHHHHHHHcccchhhhhcCccccC--CeeecC
Confidence            99999999999999999999999999999877777 555431  246663

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.8e-43  Score=328.25  Aligned_cols=378  Identities=27%  Similarity=0.428  Sum_probs=338.2

Q ss_pred             CCCChhhHHHHhhhccHHHHHHHhcC-CCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHH
Q 011328           16 KPMDPMFFIIQLQLESLPAMVAGVWS-DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEA   94 (488)
Q Consensus        16 ~~~~~~~~~~~~~~~~i~~l~~~L~s-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a   94 (488)
                      .|++..+..     |.+|.++++|.. .++.+|+.|+|+|++++++. .+..+.+++.|.+|.+++++.+++ .+++++|
T Consensus       100 ppi~~vi~~-----G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgt-se~T~~vv~agavp~fi~Ll~s~~-~~v~eQa  172 (514)
T KOG0166|consen  100 PPIDEVIQS-----GVVPRLVEFLSRDDNPTLQFEAAWALTNIASGT-SEQTKVVVDAGAVPIFIQLLSSPS-ADVREQA  172 (514)
T ss_pred             CCHHHHHHc-----CcHHHHHHHHccCCChhHHHHHHHHHHHHhcCc-hhhccccccCCchHHHHHHhcCCc-HHHHHHH
Confidence            456666666     999999999974 66999999999999999987 788899999999999999999999 9999999


Q ss_pred             HHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCH-HHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccH
Q 011328           95 AWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTD-DVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKL  173 (488)
Q Consensus        95 ~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~-~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~  173 (488)
                      +|+|+|++.+++.+|+.+++.|+++.|+.++...+. .+.+++.|+|.|+|++....-..-.-..+++.|..++ .+.|+
T Consensus       173 vWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll-~~~D~  251 (514)
T KOG0166|consen  173 VWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLL-HSTDE  251 (514)
T ss_pred             HHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHH-hcCCH
Confidence            999999999999999999999999999999988665 7888999999999987622222222335788889998 89999


Q ss_pred             hHHHHHHHHHHHhhcCC-CCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcC
Q 011328          174 SMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR  252 (488)
Q Consensus       174 ~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~  252 (488)
                      .+...|+|++++|+.+. +........|++|.++++|.+.+..++..|+++++|++.+++.+.+.+++.|+++.|..++.
T Consensus       252 ~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~  331 (514)
T KOG0166|consen  252 EVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLS  331 (514)
T ss_pred             HHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhc
Confidence            99999999999999887 45556667899999999999999999999999999999999999999999999999999998


Q ss_pred             -CCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhc-CCHHHHHHHHHcCChH
Q 011328          253 -HPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA-GNVNQIQAIIEAGIIG  330 (488)
Q Consensus       253 -~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~l~  330 (488)
                       ++.+.++..|+|+++|++.++..+++.+++.+++|.|+.+|++. +.++|++|+|+++|++. ++++++..+++.|+++
T Consensus       332 ~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~-ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~  410 (514)
T KOG0166|consen  332 SSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTA-EFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIK  410 (514)
T ss_pred             cCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhcc-chHHHHHHHHHHHhhcccCCHHHHHHHHHcCCch
Confidence             56667999999999999999999999999999999999999999 89999999999999998 6899999999999999


Q ss_pred             HHHHHHhcCChhHHHHHHHHHHHhccCCC-------HHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhh
Q 011328          331 PLVNLLLNAEFEIKKEAAWAISNATSGGS-------NEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGE  402 (488)
Q Consensus       331 ~L~~ll~~~~~~v~~~a~~aL~~l~~~~~-------~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~~  402 (488)
                      .++.+|.-.|.++...++.+|.++...+.       ......+-+.|+++.+..+-.+.+.++...|...+.+.+..++
T Consensus       411 plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggldkiE~LQ~hen~~Iy~~A~~II~~yf~~e~  489 (514)
T KOG0166|consen  411 PLCDLLTCPDVKIILVALDGLENILKVGEAEKNRGTNPLAIMIEEAGGLDKIENLQSHENEEIYKKAYKIIDTYFSEED  489 (514)
T ss_pred             hhhhcccCCChHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHccChhHHHHhhccccHHHHHHHHHHHHHhcCCCc
Confidence            99999988899999999999999986441       3345667788999999999999999999999999988876553

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=100.00  E-value=7.1e-43  Score=301.51  Aligned_cols=375  Identities=25%  Similarity=0.361  Sum_probs=332.4

Q ss_pred             cCCCCChhhHHHHhhhccHHHHHHHhc-CCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHH
Q 011328           14 LLKPMDPMFFIIQLQLESLPAMVAGVW-SDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQF   92 (488)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~i~~l~~~L~-s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~   92 (488)
                      ...||+..+..     |.+|++++.|. .+..-.++.|+|+|.+++++. ..+.+.+++.|.+|.++++|.+++ .++++
T Consensus       103 ~~PPIq~VIda-----GvVpRfvefm~~~q~~mlqfEAaWalTNiaSGt-t~QTkvVvd~~AVPlfiqlL~s~~-~~V~e  175 (526)
T COG5064         103 TSPPIQPVIDA-----GVVPRFVEFMDEIQRDMLQFEAAWALTNIASGT-TQQTKVVVDAGAVPLFIQLLSSTE-DDVRE  175 (526)
T ss_pred             cCCCchhHHhc-----cccHHHHHHHHhcchhHHHHHHHHHHhhhccCc-ccceEEEEeCCchHHHHHHHcCch-HHHHH
Confidence            45688999999     99999999995 566778999999999999987 677788889999999999999999 89999


Q ss_pred             HHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCC--CHHHHHHHHHHHhhhhCCC--chhHHHHHhcCChHHHHHHhc
Q 011328           93 EAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSP--TDDVREQAVWALGNVAGDS--PKCRDLVLSNGALMPLLAQFN  168 (488)
Q Consensus        93 ~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~--~~~v~~~a~~~L~~l~~~~--~~~~~~~~~~~~l~~L~~ll~  168 (488)
                      ++.|+|+|++.+++.+|+.+++.|++++++.++.+.  +..+.+++.|+|+|+|++.  +.....+.  ..++.|.+++ 
T Consensus       176 QavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~is--qalpiL~KLi-  252 (526)
T COG5064         176 QAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNIS--QALPILAKLI-  252 (526)
T ss_pred             HHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHH--HHHHHHHHHH-
Confidence            999999999999999999999999999999998774  4588899999999999754  22222222  3678888888 


Q ss_pred             ccccHhHHHHHHHHHHHhhcCC-CCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHH
Q 011328          169 EHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRL  247 (488)
Q Consensus       169 ~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L  247 (488)
                      .+.|+++...|+|++++++... +........|..+.|+++|.+++..++..+++.++|+...++.+.+.+++.|.++.+
T Consensus       253 ys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~  332 (526)
T COG5064         253 YSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAF  332 (526)
T ss_pred             hhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHH
Confidence            8889999999999999999987 444555668999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcC---CHHHHHHHH
Q 011328          248 VELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG---NVNQIQAII  324 (488)
Q Consensus       248 ~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~---~~~~~~~l~  324 (488)
                      ..+|.++...+|..|||+++|++.++.++.+.+++.+++|.|+++|.+. +..+|++|||+++|..++   -|+.++.++
T Consensus       333 ~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~a-e~k~kKEACWAisNatsgg~~~PD~iryLv  411 (526)
T COG5064         333 RSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSA-EYKIKKEACWAISNATSGGLNRPDIIRYLV  411 (526)
T ss_pred             HHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHH-HHHHHHHHHHHHHhhhccccCCchHHHHHH
Confidence            9999999999999999999999999999999999999999999999999 999999999999999983   578899999


Q ss_pred             HcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCC---------H-HHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHH
Q 011328          325 EAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGS---------N-EQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGL  394 (488)
Q Consensus       325 ~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~---------~-~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L  394 (488)
                      +.|++.+|+.+|...+..+.+.++.++.|+...+.         . ....++-+.|+++.+..+-++.+.++...|...+
T Consensus       412 ~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk~Ge~d~~~~~~nin~ya~~vE~Aggmd~I~~~Q~s~n~~iy~KAYsII  491 (526)
T COG5064         412 SQGFIKPLCDLLDVVDNKIIEVALDAIENILKVGEQDRLRYGKNINIYAVYVEKAGGMDAIHGLQDSVNRTIYDKAYSII  491 (526)
T ss_pred             HccchhHHHHHHhccCccchhhhHHHHHHHHhhhhHHHHhccCCccHHHHHHHhcccHHHHHHhhhccccHHHHHHHHHH
Confidence            99999999999999888888899999999987652         2 3344455589999999999999999999888888


Q ss_pred             HHHHH
Q 011328          395 ENILK  399 (488)
Q Consensus       395 ~~l~~  399 (488)
                      ..++.
T Consensus       492 e~fFg  496 (526)
T COG5064         492 EKFFG  496 (526)
T ss_pred             HHHcc
Confidence            77763

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=100.00  E-value=9.8e-38  Score=332.64  Aligned_cols=415  Identities=20%  Similarity=0.261  Sum_probs=338.4

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh
Q 011328           30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT  109 (488)
Q Consensus        30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~  109 (488)
                      |.+|.+++.|+++++..|..|+++|.+++... .+....+++.|++|.|+++|.+++++.+|+.|+++|.+++.++++.+
T Consensus       189 GaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~-ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e~r  267 (2102)
T PLN03200        189 GGVDILVKLLSSGNSDAQANAASLLARLMMAF-ESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSKEAK  267 (2102)
T ss_pred             CCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhcCCHHHH
Confidence            99999999999999999999999999887764 56788899999999999999876547999999999999999999999


Q ss_pred             HHHHhCCCHHHHHHhhCCCC---------HHHHHHHHHHHhhhhCCCch-----------hHHH----------------
Q 011328          110 RVVIDHGAVPIFVRLLSSPT---------DDVREQAVWALGNVAGDSPK-----------CRDL----------------  153 (488)
Q Consensus       110 ~~~~~~g~i~~L~~~L~~~~---------~~v~~~a~~~L~~l~~~~~~-----------~~~~----------------  153 (488)
                      ..+++.|+++.|++++.+++         ..++++|+|+|+|+|.+.+.           .+..                
T Consensus       268 ~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~~L~~ll~s~rd~~~~ada~gALayll~l  347 (2102)
T PLN03200        268 QAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGMSALILYLGELSESPRSPAPIADTLGALAYALMV  347 (2102)
T ss_pred             HHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCchhhHHHHHHhhcccchHHHHHHHHhhHHHHHHh
Confidence            99999999999999998644         44699999999999985322           0000                


Q ss_pred             ----------------------------------------------------HHhcCChHHHHHHhcccccHhHHHHHHH
Q 011328          154 ----------------------------------------------------VLSNGALMPLLAQFNEHAKLSMLRNATW  181 (488)
Q Consensus       154 ----------------------------------------------------~~~~~~l~~L~~ll~~~~~~~v~~~a~~  181 (488)
                                                                          +.+.++++.|+.++ ...+.+++..++|
T Consensus       348 ~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL-~~~~~evQ~~Av~  426 (2102)
T PLN03200        348 FDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLI-TMATADVQEELIR  426 (2102)
T ss_pred             cCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhh-ccCCHHHHHHHHH
Confidence                                                                00111222223333 3344678899999


Q ss_pred             HHHHhhcCC-CCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHh
Q 011328          182 TLSNFCRGK-PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLI  260 (488)
Q Consensus       182 ~L~~l~~~~-~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~  260 (488)
                      +|++++.+. .........+++|.|+++|.+++..++..+++++++++..+++....+++.|+++.|+++|.++++.+++
T Consensus       427 aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqe  506 (2102)
T PLN03200        427 ALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKE  506 (2102)
T ss_pred             HHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHH
Confidence            999999876 4445556688999999999999999999999999999988887788899999999999999999999999


Q ss_pred             HHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccc-------------------------------------------
Q 011328          261 PALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNY-------------------------------------------  297 (488)
Q Consensus       261 ~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~-------------------------------------------  297 (488)
                      .|+|+|+|++.+.+..+..+.+.|+++.|+++|+++.                                           
T Consensus       507 eAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~  586 (2102)
T PLN03200        507 DSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLD  586 (2102)
T ss_pred             HHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHH
Confidence            9999999999754433333334455555555555440                                           


Q ss_pred             -----------------------------------hhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChh
Q 011328          298 -----------------------------------KKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFE  342 (488)
Q Consensus       298 -----------------------------------~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~  342 (488)
                                                         +..+++.|+|+|.|++.++++.++.++..|++++++.++.+++.+
T Consensus       587 vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~  666 (2102)
T PLN03200        587 VLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEA  666 (2102)
T ss_pred             HHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChH
Confidence                                               444455555555555555555566677788999999999999999


Q ss_pred             HHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHh
Q 011328          343 IKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDD  422 (488)
Q Consensus       343 v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~  422 (488)
                      ++++++|+|.+++.....+++..+.+.|++++|+++++.++.+++..++.+|.+++...+.             ...+..
T Consensus       667 v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~-------------~~ei~~  733 (2102)
T PLN03200        667 VATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEV-------------AAEALA  733 (2102)
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchH-------------HHHHHh
Confidence            9999999999999887778888889999999999999999999999999999999988773             555777


Q ss_pred             hccHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCCC
Q 011328          423 AEGLEKIENLQSHDNTEIYEKAVKILETYWVEEDEDE  459 (488)
Q Consensus       423 ~g~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~~~~~  459 (488)
                      .|++..|.+++.+.+++.++.|.+.|.++......+|
T Consensus       734 ~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~  770 (2102)
T PLN03200        734 EDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDD  770 (2102)
T ss_pred             cCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhH
Confidence            8999999999999999999999999998888776655

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=100.00  E-value=1e-36  Score=324.90  Aligned_cols=416  Identities=19%  Similarity=0.199  Sum_probs=368.3

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh
Q 011328           30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT  109 (488)
Q Consensus        30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~  109 (488)
                      +.++.|+.+|++.+.++|..++++|..++.++ .+..+.+.+.|++|.|+++|.+++ +.+|..|++++++++.++++.+
T Consensus       404 daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~-~e~~~aIi~~ggIp~LV~LL~s~s-~~iQ~~A~~~L~nLa~~ndenr  481 (2102)
T PLN03200        404 EAKKVLVGLITMATADVQEELIRALSSLCCGK-GGLWEALGGREGVQLLISLLGLSS-EQQQEYAVALLAILTDEVDESK  481 (2102)
T ss_pred             cchhhhhhhhccCCHHHHHHHHHHHHHHhCCC-HHHHHHHHHcCcHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCCHHHH
Confidence            77889999999999999999999999987765 678899999999999999999998 8999999999999999888999


Q ss_pred             HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcC
Q 011328          110 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG  189 (488)
Q Consensus       110 ~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~  189 (488)
                      ..+++.|++|.|+++|++++..+++.|+|+|+|++.+++..+..+.+.|++++|+++| ++.+...+..++|+|.+++..
T Consensus       482 ~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL-~sgd~~~q~~Aa~AL~nLi~~  560 (2102)
T PLN03200        482 WAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLL-KNGGPKGQEIAAKTLTKLVRT  560 (2102)
T ss_pred             HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999998877777787889999999999 667889999999999999743


Q ss_pred             CCCCC--------------------------------------hhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCC
Q 011328          190 KPQPL--------------------------------------FEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGT  231 (488)
Q Consensus       190 ~~~~~--------------------------------------~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~  231 (488)
                      .....                                      .....++++.|++++++++..+++.|+++|.+++...
T Consensus       561 ~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~  640 (2102)
T PLN03200        561 ADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSR  640 (2102)
T ss_pred             cchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC
Confidence            31110                                      0012478999999999999999999999999999998


Q ss_pred             chhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCch-hhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHH
Q 011328          232 NDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDM-QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTIS  310 (488)
Q Consensus       232 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~  310 (488)
                      .+..+.++..|+++.++.+|.+.+.+++..++++|++++.+... ++..+++.|+++.|+++|++. +.+++..|+.+|.
T Consensus       641 ~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~-d~~v~e~Al~ALa  719 (2102)
T PLN03200        641 QDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSS-SIEVAEQAVCALA  719 (2102)
T ss_pred             hHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCC-ChHHHHHHHHHHH
Confidence            88888899999999999999999999999999999999975443 445668999999999999998 9999999999999


Q ss_pred             HHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHH--HHHHHHCCChHHHHhhcCCCCHHHHH
Q 011328          311 NITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQ--IKFLVSQGCIKPLCDLLNCPDPRIVT  388 (488)
Q Consensus       311 nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~--~~~l~~~~~i~~L~~ll~~~~~~v~~  388 (488)
                      |++.. ++....+...|+++.|++++++++++.|+.|+++|.+++.....+.  ..++...|.+..|+++|+..|.+...
T Consensus       720 nLl~~-~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~  798 (2102)
T PLN03200        720 NLLSD-PEVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDSSA  798 (2102)
T ss_pred             HHHcC-chHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcchhh
Confidence            99987 4566777888999999999999999999999999999998875443  46777889999999999998887766


Q ss_pred             H--HHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCCC
Q 011328          389 V--CLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVEE  455 (488)
Q Consensus       389 ~--al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~  455 (488)
                      .  ++.+|..+.+.......     ..++|...++..++++.|.+...+.+|.++++|..+|+++..+.
T Consensus       799 ~~~al~~l~~l~~~~~~~~~-----~~~~~~~~~e~p~~l~~l~~~l~~~~p~~~~kai~il~~~~~~~  862 (2102)
T PLN03200        799 TSEALEALALLARTKGGANF-----SHPPWAVLAEVPSSLEPLVRCLAEGHPLVQDKAIEILSRLCRDQ  862 (2102)
T ss_pred             HHHHHHHHHHHHhhcccCCC-----CCCchhhHHhccCchHHHHHHHHcCChHHHHHHHHHHHHHhccC
Confidence            5  99999999886554432     35679999999999999988889999999999999999998753

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3e-31  Score=231.65  Aligned_cols=408  Identities=22%  Similarity=0.232  Sum_probs=339.7

Q ss_pred             hccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchh
Q 011328           29 LESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN  108 (488)
Q Consensus        29 ~~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~  108 (488)
                      -+.+.+++..+++.++.++..+..++.+++-+.  +..-.+++.+++..|+.-+..+. .++|..+..|+.+++. ..++
T Consensus        84 res~epvl~llqs~d~~Iq~aa~~alGnlAVn~--enk~liv~l~Gl~~Li~qmmtd~-vevqcnaVgCitnLaT-~d~n  159 (550)
T KOG4224|consen   84 RESNEPVLALLQSCDKCIQCAAGEALGNLAVNM--ENKGLIVSLLGLDLLILQMMTDG-VEVQCNAVGCITNLAT-FDSN  159 (550)
T ss_pred             hhhhhHHHHHHhCcchhhhhhhhhhhccceecc--CCceEEEeccChHHHHHHhcCCC-cEEEeeehhhhhhhhc-cccc
Confidence            366788899999999999999999999987653  44555667788888887777777 6999999999999999 5889


Q ss_pred             hHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhc
Q 011328          109 TRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR  188 (488)
Q Consensus       109 ~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~  188 (488)
                      +..+...|++.++.++-++++..++.++..+|.++... .+.|+.++..|+++.|+.++ ++.|..++..++.++++++-
T Consensus       160 k~kiA~sGaL~pltrLakskdirvqrnatgaLlnmThs-~EnRr~LV~aG~lpvLVsll-~s~d~dvqyycttaisnIaV  237 (550)
T KOG4224|consen  160 KVKIARSGALEPLTRLAKSKDIRVQRNATGALLNMTHS-RENRRVLVHAGGLPVLVSLL-KSGDLDVQYYCTTAISNIAV  237 (550)
T ss_pred             hhhhhhccchhhhHhhcccchhhHHHHHHHHHHHhhhh-hhhhhhhhccCCchhhhhhh-ccCChhHHHHHHHHhhhhhh
Confidence            99999999999999988889999999999999999744 45788999999999999999 89999999999999999998


Q ss_pred             CCCCCChhhhhc--hHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHH
Q 011328          189 GKPQPLFEQTRP--ALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTV  266 (488)
Q Consensus       189 ~~~~~~~~~~~~--~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L  266 (488)
                      .....+.....+  ++|.++.++.+++++++-.|..+|++++.....+ ..+++.|.+|.++++++++.-........|+
T Consensus       238 d~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq-~eiv~ag~lP~lv~Llqs~~~plilasVaCI  316 (550)
T KOG4224|consen  238 DRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQ-REIVEAGSLPLLVELLQSPMGPLILASVACI  316 (550)
T ss_pred             hHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhh-hHHHhcCCchHHHHHHhCcchhHHHHHHHHH
Confidence            765555555544  9999999999999999999999999999877544 5689999999999999998877888889999


Q ss_pred             hHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHH
Q 011328          267 GNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKE  346 (488)
Q Consensus       267 ~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~  346 (488)
                      .|++-+. -..-.+.+.|++..|+++|...++.+++..|..+|.|++..+..+...+.+.|.+|.+..++.++...++.+
T Consensus       317 rnisihp-lNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqse  395 (550)
T KOG4224|consen  317 RNISIHP-LNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSE  395 (550)
T ss_pred             hhccccc-CcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHH
Confidence            9998743 344456789999999999999877889999999999999988889999999999999999999999999999


Q ss_pred             HHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHH--hhc
Q 011328          347 AAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAID--DAE  424 (488)
Q Consensus       347 a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~--~~g  424 (488)
                      ...++..++.+.  ..+..+.+.|.++.|+.+..+.+.+++.++..+|.|+...-+.-.+         +.+...  ..|
T Consensus       396 isac~a~Lal~d--~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~~Yar---------viEawd~P~~g  464 (550)
T KOG4224|consen  396 ISACIAQLALND--NDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDVEHYAR---------VIEAWDHPVQG  464 (550)
T ss_pred             HHHHHHHHHhcc--ccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhhHHHHH---------HHHHhcCcchh
Confidence            999999998865  5678899999999999999999999999999999999865443211         122211  012


Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHhcCCC
Q 011328          425 GLEKIENLQSHDNTEIYEKAVKILETYWVEE  455 (488)
Q Consensus       425 ~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~  455 (488)
                      .--.|.++..+..--++..+.+.+.++.++-
T Consensus       465 i~g~L~Rfl~S~~~tf~hia~wTI~qLle~h  495 (550)
T KOG4224|consen  465 IQGRLARFLASHELTFRHIARWTIQQLLEDH  495 (550)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHHHhC
Confidence            2334555555555555666666665555443

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.7e-30  Score=226.91  Aligned_cols=364  Identities=21%  Similarity=0.281  Sum_probs=319.1

Q ss_pred             hhccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCch
Q 011328           28 QLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSE  107 (488)
Q Consensus        28 ~~~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~  107 (488)
                      +++++..|+..+.++.-++|..++.++.+++..+  +....+...|++.++.++-++.+ ..+|..+..+|.++.. +.+
T Consensus       124 ~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~d--~nk~kiA~sGaL~pltrLakskd-irvqrnatgaLlnmTh-s~E  199 (550)
T KOG4224|consen  124 SLLGLDLLILQMMTDGVEVQCNAVGCITNLATFD--SNKVKIARSGALEPLTRLAKSKD-IRVQRNATGALLNMTH-SRE  199 (550)
T ss_pred             eccChHHHHHHhcCCCcEEEeeehhhhhhhhccc--cchhhhhhccchhhhHhhcccch-hhHHHHHHHHHHHhhh-hhh
Confidence            3588999999999999999999999999998764  56677889999999999888888 8999999999999998 899


Q ss_pred             hhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcC--ChHHHHHHhcccccHhHHHHHHHHHHH
Q 011328          108 NTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNG--ALMPLLAQFNEHAKLSMLRNATWTLSN  185 (488)
Q Consensus       108 ~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~--~l~~L~~ll~~~~~~~v~~~a~~~L~~  185 (488)
                      +|..++..|++|.|+.++++.+++++..|..++++++-+.. .|+.+.+.+  .++.|+.++ ++.++.++-.|..+|.+
T Consensus       200 nRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~-~Rk~Laqaep~lv~~Lv~Lm-d~~s~kvkcqA~lALrn  277 (550)
T KOG4224|consen  200 NRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRR-ARKILAQAEPKLVPALVDLM-DDGSDKVKCQAGLALRN  277 (550)
T ss_pred             hhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHH-HHHHHHhcccchHHHHHHHH-hCCChHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999987655 577777777  899999999 88899999999999999


Q ss_pred             hhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCC-cchHhHHHH
Q 011328          186 FCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPS-PSVLIPALR  264 (488)
Q Consensus       186 l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~v~~~a~~  264 (488)
                      ++.+..........|.+|.++++++++..........|+.|++-++.+. ..+++.|++..|+.+|+..+ ++++-.|..
T Consensus       278 lasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe-~lI~dagfl~pLVrlL~~~dnEeiqchAvs  356 (550)
T KOG4224|consen  278 LASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNE-VLIADAGFLRPLVRLLRAGDNEEIQCHAVS  356 (550)
T ss_pred             hcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcc-cceecccchhHHHHHHhcCCchhhhhhHHH
Confidence            9998877777788999999999999998888889999999999776543 55888999999999998865 569999999


Q ss_pred             HHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHH
Q 011328          265 TVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIK  344 (488)
Q Consensus       265 ~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~  344 (488)
                      +|++++..++.....+.+.|.++.+..++.+. .-.++.+...++..++.. +.....+.+.|++|.|+.++.+.+.+++
T Consensus       357 tLrnLAasse~n~~~i~esgAi~kl~eL~lD~-pvsvqseisac~a~Lal~-d~~k~~lld~gi~~iLIp~t~s~s~Ev~  434 (550)
T KOG4224|consen  357 TLRNLAASSEHNVSVIRESGAIPKLIELLLDG-PVSVQSEISACIAQLALN-DNDKEALLDSGIIPILIPWTGSESEEVR  434 (550)
T ss_pred             HHHHHhhhhhhhhHHHhhcCchHHHHHHHhcC-ChhHHHHHHHHHHHHHhc-cccHHHHhhcCCcceeecccCccchhhc
Confidence            99999998888889999999999999999998 888999999999999875 4556788999999999999999999999


Q ss_pred             HHHHHHHHHhccCCCHHHHHHHHH------CCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhh
Q 011328          345 KEAAWAISNATSGGSNEQIKFLVS------QGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGE  402 (488)
Q Consensus       345 ~~a~~aL~~l~~~~~~~~~~~l~~------~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~~  402 (488)
                      .+|+.+|.|+++.  .+....+++      .|.-..|.+.+.+.+..++..+.+.+..++....
T Consensus       435 gNaAaAL~Nlss~--v~~YarviEawd~P~~gi~g~L~Rfl~S~~~tf~hia~wTI~qLle~h~  496 (550)
T KOG4224|consen  435 GNAAAALINLSSD--VEHYARVIEAWDHPVQGIQGRLARFLASHELTFRHIARWTIQQLLEDHD  496 (550)
T ss_pred             ccHHHHHHhhhhh--hHHHHHHHHHhcCcchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCC
Confidence            9999999999874  355555554      3556677888888777888888888887776543

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=99.95  E-value=4.3e-25  Score=218.59  Aligned_cols=380  Identities=19%  Similarity=0.189  Sum_probs=316.1

Q ss_pred             HHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHH
Q 011328           44 RNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVR  123 (488)
Q Consensus        44 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~  123 (488)
                      ..+...+.+.|.+++..  ......+.+.|+++.|+++|++++ .++...++.+|.+++. ..+++..+.+.|+++.|.+
T Consensus       263 eqLlrv~~~lLlNLAed--~~ve~kM~~~~iV~~Lv~~Ldr~n-~ellil~v~fLkkLSi-~~ENK~~m~~~giV~kL~k  338 (708)
T PF05804_consen  263 EQLLRVAFYLLLNLAED--PRVELKMVNKGIVSLLVKCLDREN-EELLILAVTFLKKLSI-FKENKDEMAESGIVEKLLK  338 (708)
T ss_pred             HHHHHHHHHHHHHHhcC--hHHHHHHHhcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHcC-CHHHHHHHHHcCCHHHHHH
Confidence            34444678889998764  467788889999999999999988 8999999999999999 7889999999999999999


Q ss_pred             hhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHH
Q 011328          124 LLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALP  203 (488)
Q Consensus       124 ~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~  203 (488)
                      ++.+++.+++..++++|.|++.+.. .|..+++.|.++.++.++.   ++..+..++.+|.+++.....+.....++++|
T Consensus       339 Ll~s~~~~l~~~aLrlL~NLSfd~~-~R~~mV~~GlIPkLv~LL~---d~~~~~val~iLy~LS~dd~~r~~f~~TdcIp  414 (708)
T PF05804_consen  339 LLPSENEDLVNVALRLLFNLSFDPE-LRSQMVSLGLIPKLVELLK---DPNFREVALKILYNLSMDDEARSMFAYTDCIP  414 (708)
T ss_pred             HhcCCCHHHHHHHHHHHHHhCcCHH-HHHHHHHCCCcHHHHHHhC---CCchHHHHHHHHHHhccCHhhHHHHhhcchHH
Confidence            9999999999999999999998765 6899999999999999993   34566779999999999887666677788999


Q ss_pred             HHHHhhcc-CChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhh
Q 011328          204 ALERLIHS-NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIIN  282 (488)
Q Consensus       204 ~l~~ll~~-~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~  282 (488)
                      .+++++.+ ++..+...++..+.|++.+.. ..+.+.+.++++.|++.......   ...+..+.|++.+.+.....+. 
T Consensus       415 ~L~~~Ll~~~~~~v~~eliaL~iNLa~~~r-naqlm~~g~gL~~L~~ra~~~~D---~lLlKlIRNiS~h~~~~k~~f~-  489 (708)
T PF05804_consen  415 QLMQMLLENSEEEVQLELIALLINLALNKR-NAQLMCEGNGLQSLMKRALKTRD---PLLLKLIRNISQHDGPLKELFV-  489 (708)
T ss_pred             HHHHHHHhCCCccccHHHHHHHHHHhcCHH-HHHHHHhcCcHHHHHHHHHhccc---HHHHHHHHHHHhcCchHHHHHH-
Confidence            99997654 567777788889999998775 44778888899999888655332   2346789999998754443332 


Q ss_pred             CCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC--ChhHHHHHHHHHHHhccCCCH
Q 011328          283 HQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA--EFEIKKEAAWAISNATSGGSN  360 (488)
Q Consensus       283 ~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~~~  360 (488)
                       +.+..|+.++..+.+++...+++.+|+|+...+.+..+.+-+.+++|.+.+.|..+  ++++..+++..++.++.  ++
T Consensus       490 -~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~--d~  566 (708)
T PF05804_consen  490 -DFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLAS--DP  566 (708)
T ss_pred             -HHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHC--CH
Confidence             47778888888776889999999999999886555555555789999999999876  56799999999999986  56


Q ss_pred             HHHHHHHHCCChHHHHhhcCC--CCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCH
Q 011328          361 EQIKFLVSQGCIKPLCDLLNC--PDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNT  438 (488)
Q Consensus       361 ~~~~~l~~~~~i~~L~~ll~~--~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~~~~  438 (488)
                      +.+..+.+.|+++.|+++++.  .|.+++.+.+.++.+++...+.            ....+.+.+....+.+++++.|+
T Consensus       567 ~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~t------------r~~ll~~~~~~~ylidL~~d~N~  634 (708)
T PF05804_consen  567 ECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEET------------REVLLKETEIPAYLIDLMHDKNA  634 (708)
T ss_pred             HHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHH------------HHHHHhccchHHHHHHHhcCCCH
Confidence            888999999999999999984  5688999999999999988663            24556778999999999999999


Q ss_pred             HHHHHHHHHHHHh
Q 011328          439 EIYEKAVKILETY  451 (488)
Q Consensus       439 ~v~~~a~~~l~~~  451 (488)
                      +|++.|..+|+-.
T Consensus       635 ~ir~~~d~~Ldii  647 (708)
T PF05804_consen  635 EIRKVCDNALDII  647 (708)
T ss_pred             HHHHHHHHHHHHH
Confidence            9998888877543

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=99.94  E-value=3.1e-23  Score=205.50  Aligned_cols=363  Identities=18%  Similarity=0.211  Sum_probs=304.4

Q ss_pred             hhhccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCc
Q 011328           27 LQLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTS  106 (488)
Q Consensus        27 ~~~~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~  106 (488)
                      .+.+.++.|++.|.+++.++...++..|.++.-.  .++...+.+.|+++.|.+++.+++ .+++..++++|.|++. ++
T Consensus       287 ~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~--~ENK~~m~~~giV~kL~kLl~s~~-~~l~~~aLrlL~NLSf-d~  362 (708)
T PF05804_consen  287 VNKGIVSLLVKCLDRENEELLILAVTFLKKLSIF--KENKDEMAESGIVEKLLKLLPSEN-EDLVNVALRLLFNLSF-DP  362 (708)
T ss_pred             HhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC--HHHHHHHHHcCCHHHHHHHhcCCC-HHHHHHHHHHHHHhCc-CH
Confidence            3449999999999999999999999999996543  577899999999999999999998 8999999999999999 89


Q ss_pred             hhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHh
Q 011328          107 ENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNF  186 (488)
Q Consensus       107 ~~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l  186 (488)
                      +.|..+++.|++|.|+.+|.+  +..+..++.+|++++.+.. .+..+...++++.+++++..++++.+...+++++.|+
T Consensus       363 ~~R~~mV~~GlIPkLv~LL~d--~~~~~val~iLy~LS~dd~-~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNL  439 (708)
T PF05804_consen  363 ELRSQMVSLGLIPKLVELLKD--PNFREVALKILYNLSMDDE-ARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINL  439 (708)
T ss_pred             HHHHHHHHCCCcHHHHHHhCC--CchHHHHHHHHHHhccCHh-hHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHH
Confidence            999999999999999999976  4566779999999998664 6888888899999999886777777888889999999


Q ss_pred             hcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCC-CCcchHhHHHHH
Q 011328          187 CRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH-PSPSVLIPALRT  265 (488)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-~~~~v~~~a~~~  265 (488)
                      +.+......+...++++.|++..-+....   ..+..++|++.+++.....+.  +.+..|+.++.. ++++....++.+
T Consensus       440 a~~~rnaqlm~~g~gL~~L~~ra~~~~D~---lLlKlIRNiS~h~~~~k~~f~--~~i~~L~~~v~~~~~ee~~vE~LGi  514 (708)
T PF05804_consen  440 ALNKRNAQLMCEGNGLQSLMKRALKTRDP---LLLKLIRNISQHDGPLKELFV--DFIGDLAKIVSSGDSEEFVVECLGI  514 (708)
T ss_pred             hcCHHHHHHHHhcCcHHHHHHHHHhcccH---HHHHHHHHHHhcCchHHHHHH--HHHHHHHHHhhcCCcHHHHHHHHHH
Confidence            99987777777778888888776544332   245689999988754433333  567777777766 467889999999


Q ss_pred             HhHhhcCCchhhHHHhhCCChHHHHHHhcccc-hhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC--Chh
Q 011328          266 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNY-KKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA--EFE  342 (488)
Q Consensus       266 L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~-~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~--~~~  342 (488)
                      |+|+...+......+.+.+++|.+.+.|..+. .+++..+++..++.++.. +.....+.+.|+++.|+.++...  |.+
T Consensus       515 LaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d-~~~A~lL~~sgli~~Li~LL~~kqeDdE  593 (708)
T PF05804_consen  515 LANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASD-PECAPLLAKSGLIPTLIELLNAKQEDDE  593 (708)
T ss_pred             HHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCC-HHHHHHHHhCChHHHHHHHHHhhCchHH
Confidence            99999866666666667899999999997542 457889999999998864 77788888999999999999876  788


Q ss_pred             HHHHHHHHHHHhccCCCHHHHHHHH-HCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhh
Q 011328          343 IKKEAAWAISNATSGGSNEQIKFLV-SQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAE  404 (488)
Q Consensus       343 v~~~a~~aL~~l~~~~~~~~~~~l~-~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~  404 (488)
                      +..+.+.++.++..+.  +.+..+. +.+++..|++++++.+++++..|-.+|.-+...++..
T Consensus       594 ~VlQil~~f~~ll~h~--~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d~~w  654 (708)
T PF05804_consen  594 IVLQILYVFYQLLFHE--ETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYDEEW  654 (708)
T ss_pred             HHHHHHHHHHHHHcCh--HHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCHHH
Confidence            9999999999999875  5555654 4799999999999999999999999999988887654

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.87  E-value=2.1e-19  Score=173.31  Aligned_cols=389  Identities=19%  Similarity=0.276  Sum_probs=315.8

Q ss_pred             ccHHHHHHHhcCC-CHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchh
Q 011328           30 ESLPAMVAGVWSD-DRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN  108 (488)
Q Consensus        30 ~~i~~l~~~L~s~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~  108 (488)
                      +.+..|++.|+.+ |+..|++|+.-|+++++..+++....+.-..++|.|+.+|++..+.++...|+++|.+++.-.|..
T Consensus       167 Sk~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S  246 (1051)
T KOG0168|consen  167 SKAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRS  246 (1051)
T ss_pred             HHHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccch
Confidence            4678899999875 999999999999999988877777766677899999999999888999999999999999988999


Q ss_pred             hHHHHhCCCHHHHHHhhCC-CCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhh
Q 011328          109 TRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFC  187 (488)
Q Consensus       109 ~~~~~~~g~i~~L~~~L~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~  187 (488)
                      ...+++.+.||.|+.-|.. +..++.++++.+|-.|++..+   ..++..|++...+..+ +--+..+++.|+.+..|+|
T Consensus       247 ~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~---~AiL~AG~l~a~Lsyl-DFFSi~aQR~AlaiaaN~C  322 (1051)
T KOG0168|consen  247 SAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHP---KAILQAGALSAVLSYL-DFFSIHAQRVALAIAANCC  322 (1051)
T ss_pred             hheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcc---HHHHhcccHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence            9999999999999986655 889999999999999998876   3788999999999999 6678899999999999999


Q ss_pred             cCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhcc---CCchhHHHHHHhCCHHHHHHhcCCC----CcchHh
Q 011328          188 RGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSD---GTNDKIQAVIEAGVCPRLVELLRHP----SPSVLI  260 (488)
Q Consensus       188 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~---~~~~~~~~~~~~~~l~~L~~lL~~~----~~~v~~  260 (488)
                      ..-.......+...+|.|..+|...|.+..+.++-++..++.   +.++..+.+...+++....+++.-.    +..+..
T Consensus       323 ksi~sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~  402 (1051)
T KOG0168|consen  323 KSIRSDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYT  402 (1051)
T ss_pred             hcCCCccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchh
Confidence            998888888899999999999999999999999999999884   4567778888999999999988653    234555


Q ss_pred             HHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccc-------------hhhHHHHHH---------------------
Q 011328          261 PALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNY-------------KKSIKKEAC---------------------  306 (488)
Q Consensus       261 ~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~-------------~~~v~~~a~---------------------  306 (488)
                      ..++.+..++.+.+.....+.+.++...+..+|....             .+.-..+..                     
T Consensus       403 ~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~s~s~nas~~~~l~r~Pnel~e~~sl~~eLlp~~p~e~i~~~~~~  482 (1051)
T KOG0168|consen  403 GVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGYSKSANASLHELLSRSPNELYELTSLIIELLPCLPVEGIFAVDCS  482 (1051)
T ss_pred             HHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhccCcCcccccccccccCcHHHHHHHHHHheeecCCcccceeehhhh
Confidence            6777888888887877777777788777777774421             000000000                     


Q ss_pred             -------------------------------HHHHH----------------------HhcCCHHHHHHHHHcCChHHHH
Q 011328          307 -------------------------------WTISN----------------------ITAGNVNQIQAIIEAGIIGPLV  333 (488)
Q Consensus       307 -------------------------------~~L~n----------------------l~~~~~~~~~~l~~~~~l~~L~  333 (488)
                                                     +.+..                      +....++..+.+.. .++|.|+
T Consensus       483 ~~~~~~n~~~~~~~~~~d~~~s~~~~~~~~~ri~~q~~~~~~t~~~~~dkl~~~~r~~~l~nqpel~q~F~~-~llpVLv  561 (1051)
T KOG0168|consen  483 LIYEIVNLADELLWQWRDDRGSWHTYTNIDSRIIEQINEDTGTSRKQQDKLNGSAREGLLKNQPELLQSFGK-DLLPVLV  561 (1051)
T ss_pred             hhcccccccccccccCccccccccccchhhhhhhhhhccCcccchhhhhhcCCchhhhhhhcCHHHHHHHHH-HHHHHHH
Confidence                                           11110                      00111233333333 3799999


Q ss_pred             HHHhcC-ChhHHHHHHHHHHHhccCCCHHHHHHHHHC-CChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCC
Q 011328          334 NLLLNA-EFEIKKEAAWAISNATSGGSNEQIKFLVSQ-GCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTG  411 (488)
Q Consensus       334 ~ll~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~-~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~  411 (488)
                      +.+.+. ++.||..++.||..+....+.+.+..++.. ..-..+-.++.+.|..+..-|+....-|++.-+..       
T Consensus       562 eVYsSsA~~~VR~kcL~Ailrlvy~s~seli~slLk~~~vSS~lAG~lsskD~~vlVgALQvAEiLmeKlpd~-------  634 (1051)
T KOG0168|consen  562 EVYSSSANPDVRYKCLSAILRLVYFSNSELIGSLLKNTNVSSHLAGMLSSKDLTVLVGALQVAEILMEKLPDT-------  634 (1051)
T ss_pred             HHHhccCCchhhHHHHHHHHHHHhhCCHHHHHHHHhcchHHHHHHhhhhcCCCeeEeehHHHHHHHHHHhHHH-------
Confidence            999887 999999999999999998888888777655 55566677899999999999999999888776644       


Q ss_pred             ccchHHHHHHhhccHHHHHHhhc
Q 011328          412 GVNLFAQAIDDAEGLEKIENLQS  434 (488)
Q Consensus       412 ~~~~~~~~l~~~g~~~~L~~l~~  434 (488)
                          |...|++.|.+..+.+|..
T Consensus       635 ----F~~~F~REGV~~~v~~L~~  653 (1051)
T KOG0168|consen  635 ----FSPSFRREGVFHAVKQLSV  653 (1051)
T ss_pred             ----hhhhHhhhhHHHHHHHHhc
Confidence                7888999999999999976

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=99.83  E-value=2.7e-18  Score=166.51  Aligned_cols=366  Identities=20%  Similarity=0.227  Sum_probs=286.1

Q ss_pred             CHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCch--hH
Q 011328           74 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK--CR  151 (488)
Q Consensus        74 ~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~--~~  151 (488)
                      -+|..+.+|.+.+ +.++..|+.-+..++.++.+.+..+.+.|+|+.|+.+|.+.+.+++..|+++|.||......  .+
T Consensus       234 ~lpe~i~mL~~q~-~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NK  312 (717)
T KOG1048|consen  234 TLPEVISMLMSQD-PSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNK  312 (717)
T ss_pred             ccHHHHHHHhccC-hhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccc
Confidence            4677888999988 89999999999999999999999999999999999999999999999999999999976544  67


Q ss_pred             HHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccC--------------ChhHH
Q 011328          152 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSN--------------DDEVL  217 (488)
Q Consensus       152 ~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~--------------~~~v~  217 (488)
                      -.+.+.++++.+++++.+..|.++++.+..+|+||+.++ ..+.......+..|..-+-.+              +..+.
T Consensus       313 lai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D-~lK~~ii~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf  391 (717)
T KOG1048|consen  313 LAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSND-ALKMLIITSALSTLTDNVIIPHSGWEEEPAPRKAEDSTVF  391 (717)
T ss_pred             hhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchh-HHHHHHHHHHHHHHHHhhcccccccCCCCcccccccceee
Confidence            788999999999999977789999999999999999984 444445566666666544311              35678


Q ss_pred             HHHHHHHHHhccCCchhHHHHHHh-CCHHHHHHhcCC------CCcchHhHHHHHHhHhhcCCch---------------
Q 011328          218 TDACWALSYLSDGTNDKIQAVIEA-GVCPRLVELLRH------PSPSVLIPALRTVGNIVTGDDM---------------  275 (488)
Q Consensus       218 ~~al~~L~~l~~~~~~~~~~~~~~-~~l~~L~~lL~~------~~~~v~~~a~~~L~~l~~~~~~---------------  275 (488)
                      ..+..||+|++....+..+.+.+. |+++.|+..+++      .+....+.++.++.|+...-+.               
T Consensus       392 ~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~  471 (717)
T KOG1048|consen  392 RNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIAR  471 (717)
T ss_pred             ehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccc
Confidence            899999999998776666666664 788998888753      3556677888888888753220               


Q ss_pred             ----------------hhHH----------------------HhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCC-
Q 011328          276 ----------------QTQC----------------------IINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGN-  316 (488)
Q Consensus       276 ----------------~~~~----------------------~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~-  316 (488)
                                      ..+.                      +....++..-+.+|....+..+.+.++.+|-|++.+. 
T Consensus       472 ~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~  551 (717)
T KOG1048|consen  472 LPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLW  551 (717)
T ss_pred             cccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCC
Confidence                            0000                      1122344454555554447888999999999999842 


Q ss_pred             ---HHHHHHH-HHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCC------HHH
Q 011328          317 ---VNQIQAI-IEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPD------PRI  386 (488)
Q Consensus       317 ---~~~~~~l-~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~------~~v  386 (488)
                         ...+..+ .+..+++.+++++..+++.|...++.+|.|++.+.  .. +.++.+++++.|++.|....      +++
T Consensus       552 ~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~--rn-k~ligk~a~~~lv~~Lp~~~~~~~~sedt  628 (717)
T KOG1048|consen  552 TWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDI--RN-KELIGKYAIPDLVRCLPGSGPSTSLSEDT  628 (717)
T ss_pred             cchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCc--hh-hhhhhcchHHHHHHhCcCCCCCcCchHHH
Confidence               2233334 46789999999999999999999999999999864  33 34455899999999998543      578


Q ss_pred             HHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcC-CCHHHHHHHHHHHHHhcCCCC
Q 011328          387 VTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSH-DNTEIYEKAVKILETYWVEED  456 (488)
Q Consensus       387 ~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~-~~~~v~~~a~~~l~~~~~~~~  456 (488)
                      ...++..|.+++......            ...+-+.+++++|..+..+ .++++.+.|..++..+|.-.+
T Consensus       629 v~~vc~tl~niv~~~~~n------------Akdl~~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~lW~y~e  687 (717)
T KOG1048|consen  629 VRAVCHTLNNIVRKNVLN------------AKDLLEIKGIPKLRLISKSQHSPKEFKAASSVLDVLWQYKE  687 (717)
T ss_pred             HHHHHHhHHHHHHHhHHH------------HHHHHhccChHHHHHHhcccCCHHHHHHHHHHHHHHHHHHH
Confidence            889999999998665543            4456678889999998644 578999999999999998744

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=99.81  E-value=1.2e-17  Score=162.04  Aligned_cols=365  Identities=21%  Similarity=0.258  Sum_probs=282.7

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCch--
Q 011328           30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSE--  107 (488)
Q Consensus        30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~--  107 (488)
                      -.+|..+..|.+.++.+|..|+..+..+.-.+ ++....+...|+|+.|+.+|.+.. .+++.+|+++|.|+..++..  
T Consensus       233 ~~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd-~~ik~~vrqlggI~kLv~Ll~~~~-~evq~~acgaLRNLvf~~~~~~  310 (717)
T KOG1048|consen  233 PTLPEVISMLMSQDPSVQSNAAAYLQHLCFGD-NKIKSRVRQLGGIPKLVALLDHRN-DEVQRQACGALRNLVFGKSTDS  310 (717)
T ss_pred             cccHHHHHHHhccChhhhHHHHHHHHHHHhhh-HHHHHHHHHhccHHHHHHHhcCCc-HHHHHHHHHHHHhhhcccCCcc
Confidence            35788899999999999999999998865544 676777788999999999999999 99999999999999986655  


Q ss_pred             hhHHHHhCCCHHHHHHhhCC-CCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhc-cc------------ccH
Q 011328          108 NTRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN-EH------------AKL  173 (488)
Q Consensus       108 ~~~~~~~~g~i~~L~~~L~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~-~~------------~~~  173 (488)
                      ++-.+.+.++++.++++|+. .+.++++....+|+||++.+ .++..++. ..+..|...+. ..            .+.
T Consensus       311 NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D-~lK~~ii~-~al~tLt~~vI~P~Sgw~~~~~~~~~~~~  388 (717)
T KOG1048|consen  311 NKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSND-ALKMLIIT-SALSTLTDNVIIPHSGWEEEPAPRKAEDS  388 (717)
T ss_pred             cchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchh-HHHHHHHH-HHHHHHHHhhcccccccCCCCcccccccc
Confidence            88889999999999999997 89999999999999999874 34444443 45666655442 11            146


Q ss_pred             hHHHHHHHHHHHhhcCC--CCCChhhhhchHHHHHHhhc------cCChhHHHHHHHHHHHhccCCch------------
Q 011328          174 SMLRNATWTLSNFCRGK--PQPLFEQTRPALPALERLIH------SNDDEVLTDACWALSYLSDGTND------------  233 (488)
Q Consensus       174 ~v~~~a~~~L~~l~~~~--~~~~~~~~~~~~~~l~~ll~------~~~~~v~~~al~~L~~l~~~~~~------------  233 (488)
                      ++..++..+|.|++...  .........|.+..|+..++      ..|.+..+.++.++.|++..-..            
T Consensus       389 ~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~  468 (717)
T KOG1048|consen  389 TVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLAN  468 (717)
T ss_pred             eeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhc
Confidence            78899999999999854  23344455788999988876      34778889999999998843210            


Q ss_pred             -------------------hHHH----------------------HHHhCCHHHHHHhc-CCCCcchHhHHHHHHhHhhc
Q 011328          234 -------------------KIQA----------------------VIEAGVCPRLVELL-RHPSPSVLIPALRTVGNIVT  271 (488)
Q Consensus       234 -------------------~~~~----------------------~~~~~~l~~L~~lL-~~~~~~v~~~a~~~L~~l~~  271 (488)
                                         ..+.                      +....++..-..++ .+.++.+.+.+..+|-|++.
T Consensus       469 ~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA  548 (717)
T KOG1048|consen  469 IARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTA  548 (717)
T ss_pred             ccccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhc
Confidence                               0000                      11111333323333 33466788999999999998


Q ss_pred             CCchh----hHHH-hhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC------C
Q 011328          272 GDDMQ----TQCI-INHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA------E  340 (488)
Q Consensus       272 ~~~~~----~~~~-~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~------~  340 (488)
                      +....    +..+ .+..+++.++++|+.+ +..+...++.+|.|++.+ .. .+.++..++++.|++.|...      +
T Consensus       549 ~~~~~~~~~~~~v~~kekgl~~l~~ll~~~-~~~vv~s~a~~LrNls~d-~r-nk~ligk~a~~~lv~~Lp~~~~~~~~s  625 (717)
T KOG1048|consen  549 GLWTWSEYMRGAVFRKEKGLPPLVELLRND-DSDVVRSAAGALRNLSRD-IR-NKELIGKYAIPDLVRCLPGSGPSTSLS  625 (717)
T ss_pred             cCCcchhHHHhhhhhhccCccHHHHHHhcC-CchHHHHHHHHHhhhccC-ch-hhhhhhcchHHHHHHhCcCCCCCcCch
Confidence            76532    2233 4778999999999999 999999999999999986 33 34455678999999999865      3


Q ss_pred             hhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCC-CHHHHHHHHHHHHHHHHhhh
Q 011328          341 FEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCP-DPRIVTVCLEGLENILKAGE  402 (488)
Q Consensus       341 ~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~al~~L~~l~~~~~  402 (488)
                      .++...++.+|.++... +.+..+.+.+.+.++.|+.+.++. +++..+.+...|..+..+.+
T Consensus       626 edtv~~vc~tl~niv~~-~~~nAkdl~~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~lW~y~e  687 (717)
T KOG1048|consen  626 EDTVRAVCHTLNNIVRK-NVLNAKDLLEIKGIPKLRLISKSQHSPKEFKAASSVLDVLWQYKE  687 (717)
T ss_pred             HHHHHHHHHhHHHHHHH-hHHHHHHHHhccChHHHHHHhcccCCHHHHHHHHHHHHHHHHHHH
Confidence            68889999999999864 578899999999999999998864 45888888888888887766

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.80  E-value=6.6e-16  Score=152.22  Aligned_cols=400  Identities=17%  Similarity=0.173  Sum_probs=301.1

Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHH
Q 011328           34 AMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVI  113 (488)
Q Consensus        34 ~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~  113 (488)
                      .+..+|.+.+.+....++.+|..++....   ...+ ..+..+.|...|.+++ +.+|..+++.+.+++..+......+.
T Consensus        42 ~lf~~L~~~~~e~v~~~~~iL~~~l~~~~---~~~l-~~~~~~~L~~gL~h~~-~~Vr~l~l~~l~~~~~~~~~~~~~~~  116 (503)
T PF10508_consen   42 VLFDCLNTSNREQVELICDILKRLLSALS---PDSL-LPQYQPFLQRGLTHPS-PKVRRLALKQLGRIARHSEGAAQLLV  116 (503)
T ss_pred             HHHHHHhhcChHHHHHHHHHHHHHHhccC---HHHH-HHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHhcCCHHHHHHhc
Confidence            47788888888877888899999887542   2222 5578899999999999 99999999999999987777777788


Q ss_pred             hCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCC-CC
Q 011328          114 DHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQ  192 (488)
Q Consensus       114 ~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~-~~  192 (488)
                      +.++++.++.++.+++..+...|+.+|.+++...+.. +.+...+.+..|..++ ...+..++..+..++.+++... ..
T Consensus       117 ~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~-~~l~~~~~~~~L~~l~-~~~~~~vR~Rv~el~v~i~~~S~~~  194 (503)
T PF10508_consen  117 DNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGL-EQLFDSNLLSKLKSLM-SQSSDIVRCRVYELLVEIASHSPEA  194 (503)
T ss_pred             CccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhH-HHHhCcchHHHHHHHH-hccCHHHHHHHHHHHHHHHhcCHHH
Confidence            8999999999999999999999999999999877654 4566777788888888 5557788889999999998776 33


Q ss_pred             CChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcch-----H-hHHHHHH
Q 011328          193 PLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSV-----L-IPALRTV  266 (488)
Q Consensus       193 ~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v-----~-~~a~~~L  266 (488)
                      .......|+++.++..+.++|.-++..++.++..++. .+...+.+.+.|+++.|..++.+.+.+-     . -..+...
T Consensus       195 ~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~  273 (503)
T PF10508_consen  195 AEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFF  273 (503)
T ss_pred             HHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHH
Confidence            3444557899999999999999999999999999999 4455688899999999999997643221     2 2234667


Q ss_pred             hHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHH-HHc-C----ChHHHHHHHhcCC
Q 011328          267 GNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAI-IEA-G----IIGPLVNLLLNAE  340 (488)
Q Consensus       267 ~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l-~~~-~----~l~~L~~ll~~~~  340 (488)
                      ++++...+....... ..++..+.+++.+. +...+..|..+++.++.. .+....+ ... +    ++........++.
T Consensus       274 g~la~~~~~~v~~~~-p~~~~~l~~~~~s~-d~~~~~~A~dtlg~igst-~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~  350 (503)
T PF10508_consen  274 GNLARVSPQEVLELY-PAFLERLFSMLESQ-DPTIREVAFDTLGQIGST-VEGKQLLLQKQGPAMKHVLKAIGDAIKSGS  350 (503)
T ss_pred             HHHHhcChHHHHHHH-HHHHHHHHHHhCCC-ChhHHHHHHHHHHHHhCC-HHHHHHHHhhcchHHHHHHHHHHHHhcCCc
Confidence            777775443332222 24566677777787 899999999999999865 5555555 332 2    3445555555667


Q ss_pred             hhHHHHHHHHHHHhccCCCH---HHH----HH---HHHCCChH-HHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCC
Q 011328          341 FEIKKEAAWAISNATSGGSN---EQI----KF---LVSQGCIK-PLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGN  409 (488)
Q Consensus       341 ~~v~~~a~~aL~~l~~~~~~---~~~----~~---l~~~~~i~-~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~  409 (488)
                      .++|..++.++.++......   +..    ..   ....+... .++.+++.+=++++..++..|..++... +.     
T Consensus       351 ~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~-Wg-----  424 (503)
T PF10508_consen  351 TELKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQP-WG-----  424 (503)
T ss_pred             hHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCH-HH-----
Confidence            88999999999999654432   111    11   12234455 8888888887999999999999998764 22     


Q ss_pred             CCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCC
Q 011328          410 TGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVEED  456 (488)
Q Consensus       410 ~~~~~~~~~~l~~~g~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~~  456 (488)
                            .+......|.++.+.+=....+++.++.-..++.++...-.
T Consensus       425 ------~~~i~~~~gfie~lldr~~E~~K~~ke~K~~ii~~l~~~~~  465 (503)
T PF10508_consen  425 ------QREICSSPGFIEYLLDRSTETTKEGKEAKYDIIKALAKSST  465 (503)
T ss_pred             ------HHHHHhCccHHhhhcCCCCCCCHHHHHHHHHHHHHHHhccc
Confidence                  25566677777777766666678887777777777774433

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.79  E-value=6.1e-16  Score=152.47  Aligned_cols=366  Identities=17%  Similarity=0.193  Sum_probs=280.1

Q ss_pred             HHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHH
Q 011328           76 PRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVL  155 (488)
Q Consensus        76 ~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~  155 (488)
                      +.++..|++.+ .+....++.+|..+.. .......  ..+..+.|...|.++++.+|..+++.+.++..++......+.
T Consensus        41 ~~lf~~L~~~~-~e~v~~~~~iL~~~l~-~~~~~~l--~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~  116 (503)
T PF10508_consen   41 PVLFDCLNTSN-REQVELICDILKRLLS-ALSPDSL--LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLV  116 (503)
T ss_pred             HHHHHHHhhcC-hHHHHHHHHHHHHHHh-ccCHHHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhc
Confidence            44888888887 6777888899999887 3232222  346689999999999999999999999999988877777788


Q ss_pred             hcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhH
Q 011328          156 SNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKI  235 (488)
Q Consensus       156 ~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~  235 (488)
                      +.+.++.++..+ .+++..+...|..+|..++...+........+..+.|..++...+..++..++.++.+++..+++..
T Consensus       117 ~~~l~~~i~~~L-~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~  195 (503)
T PF10508_consen  117 DNELLPLIIQCL-RDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAA  195 (503)
T ss_pred             CccHHHHHHHHH-cCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHH
Confidence            889999999999 8899999999999999999877555445556678899999988888999999999999999999898


Q ss_pred             HHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhh-----HHHHHHHHHH
Q 011328          236 QAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKS-----IKKEACWTIS  310 (488)
Q Consensus       236 ~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~-----v~~~a~~~L~  310 (488)
                      ..+.+.|+++.++..+++++.-++..++.++..++. .+...+.+.+.|+++.|..++.+.....     .-...+...+
T Consensus       196 ~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g  274 (503)
T PF10508_consen  196 EAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFG  274 (503)
T ss_pred             HHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHH
Confidence            989999999999999999888899999999999999 6677888899999999999997652222     1223345666


Q ss_pred             HHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHH-HHC-----CChHHHHhhcCCCCH
Q 011328          311 NITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFL-VSQ-----GCIKPLCDLLNCPDP  384 (488)
Q Consensus       311 nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l-~~~-----~~i~~L~~ll~~~~~  384 (488)
                      +++...+....... ..++..+.+++.+.|...+..|..+++.++.  +.+....+ ...     .++..+.....+...
T Consensus       275 ~la~~~~~~v~~~~-p~~~~~l~~~~~s~d~~~~~~A~dtlg~igs--t~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~  351 (503)
T PF10508_consen  275 NLARVSPQEVLELY-PAFLERLFSMLESQDPTIREVAFDTLGQIGS--TVEGKQLLLQKQGPAMKHVLKAIGDAIKSGST  351 (503)
T ss_pred             HHHhcChHHHHHHH-HHHHHHHHHHhCCCChhHHHHHHHHHHHHhC--CHHHHHHHHhhcchHHHHHHHHHHHHhcCCch
Confidence            77764344332222 2366777788888899999999999999986  34666666 322     235555555667778


Q ss_pred             HHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhcc--HH-HHHHhhcCCCHHHHHHHHHHHHHhcC
Q 011328          385 RIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEG--LE-KIENLQSHDNTEIYEKAVKILETYWV  453 (488)
Q Consensus       385 ~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~--~~-~L~~l~~~~~~~v~~~a~~~l~~~~~  453 (488)
                      +++.+++.++.+++......... +  -.+.....+...+.  .. .+..+...|=++++..+.+++..+..
T Consensus       352 ~lk~r~l~al~~il~~~~~~~~~-~--i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~  420 (503)
T PF10508_consen  352 ELKLRALHALASILTSGTDRQDN-D--ILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAA  420 (503)
T ss_pred             HHHHHHHHHHHHHHhcCCCCchH-H--HHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhc
Confidence            99999999999998665431100 0  00111222332222  33 77788888889999999999887654

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=99.79  E-value=4.1e-17  Score=146.66  Aligned_cols=381  Identities=16%  Similarity=0.142  Sum_probs=278.1

Q ss_pred             CCCHHHHHHHHHHHHHHhccC--CCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCH
Q 011328           41 SDDRNIQLDATTQFRKLLSIE--RSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAV  118 (488)
Q Consensus        41 s~~~~~~~~a~~~L~~l~~~~--~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i  118 (488)
                      ..+..++..+..++......+  ++...+.-+..++++.|.+...+++ .++..+++++|+|+|.++.+.|..+.+.|+-
T Consensus        53 ~~~~tv~~~qssC~A~~sk~ev~r~~F~~~~I~a~~le~Lrq~psS~d-~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGa  131 (604)
T KOG4500|consen   53 TASDTVYLFQSSCLADRSKNEVERSLFRNYCIDAEALELLRQTPSSPD-TEVHEQCFRALGNICYDNNENRAAFFNLGGA  131 (604)
T ss_pred             eccchhhhhhHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHhCCCCCc-ccHHHHHHHHHhhhhccCchhHHHHHhcCCc
Confidence            355666777777777765432  1112233355778888888888887 8999999999999999999999999999998


Q ss_pred             HHHHHhhCC-------CCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhc-ccccHhHHHHHHHHHHHhhcCC
Q 011328          119 PIFVRLLSS-------PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN-EHAKLSMLRNATWTLSNFCRGK  190 (488)
Q Consensus       119 ~~L~~~L~~-------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~-~~~~~~v~~~a~~~L~~l~~~~  190 (488)
                      ..+++.|+.       .+.+....+...|.|..-++.+.+...++.|+++.|...+. ...+....+.......++..-.
T Consensus       132 qivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~  211 (604)
T KOG4500|consen  132 QIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFV  211 (604)
T ss_pred             eehHhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHH
Confidence            888887765       23578888899999999999999999999999999888774 3344444444444444433221


Q ss_pred             --CCCChhhhhchHHHHHHhhcc-CChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCC-CCcc-------hH
Q 011328          191 --PQPLFEQTRPALPALERLIHS-NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH-PSPS-------VL  259 (488)
Q Consensus       191 --~~~~~~~~~~~~~~l~~ll~~-~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-~~~~-------v~  259 (488)
                        ..............+++++.+ .++.+.+.++..+...++++.-. -.+.+.|.+..++++++. +...       ..
T Consensus       212 ~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~aend~Vk-l~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~  290 (604)
T KOG4500|consen  212 CEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAENDLVK-LSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLF  290 (604)
T ss_pred             HHhhhhhhccchHHHHHHHHHHHhhccchhhHHHHHHHHHhcCccee-eehhhcchHHHHHHHHHhcccccchHHHHHHH
Confidence              012223335566667777765 37788888999999988876544 347777889999888866 2211       22


Q ss_pred             hHHHHHHhHhhcCCchhhHHHhhCC-ChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhc
Q 011328          260 IPALRTVGNIVTGDDMQTQCIINHQ-ALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN  338 (488)
Q Consensus       260 ~~a~~~L~~l~~~~~~~~~~~~~~~-~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~  338 (488)
                      ..++....-+..+.+ ..+.+...+ +++.+.+++.+. +......+..+++|+++. +.....+++.+++..|++++..
T Consensus       291 k~~~el~vllltGDe-SMq~L~~~p~~l~~~~sw~~S~-d~~l~t~g~LaigNfaR~-D~~ci~~v~~~~~nkL~~~l~~  367 (604)
T KOG4500|consen  291 KRIAELDVLLLTGDE-SMQKLHADPQFLDFLESWFRSD-DSNLITMGSLAIGNFARR-DDICIQLVQKDFLNKLISCLMQ  367 (604)
T ss_pred             HhhhhHhhhhhcCch-HHHHHhcCcHHHHHHHHHhcCC-chhHHHHHHHHHHhhhcc-chHHHHHHHHHHHHHHHHHHHH
Confidence            233444444444333 344455444 899999999999 899999999999999987 5566778899999999999975


Q ss_pred             -----CChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCcc
Q 011328          339 -----AEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGV  413 (488)
Q Consensus       339 -----~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~  413 (488)
                           ++.+++..++.||.|++..-  .....+...|+.+.+...++...|.+....+..++-+...-+..         
T Consensus       368 ~~~vdgnV~~qhA~lsALRnl~IPv--~nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~---------  436 (604)
T KOG4500|consen  368 EKDVDGNVERQHACLSALRNLMIPV--SNKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYI---------  436 (604)
T ss_pred             hcCCCccchhHHHHHHHHHhccccC--CchhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHH---------
Confidence                 36678899999999998754  45667889999999999999999999988888887666554432         


Q ss_pred             chHHHHHHhhccHHHHHHhhcCCCHH
Q 011328          414 NLFAQAIDDAEGLEKIENLQSHDNTE  439 (488)
Q Consensus       414 ~~~~~~l~~~g~~~~L~~l~~~~~~~  439 (488)
                        ..+....-..+++|..+..+++-.
T Consensus       437 --a~eL~kn~~l~ekLv~Wsks~D~a  460 (604)
T KOG4500|consen  437 --ACELAKNPELFEKLVDWSKSPDFA  460 (604)
T ss_pred             --HHHHhcCHHHHHHHHHhhhCCccc
Confidence              244445555678888888776544

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.78  E-value=1.1e-17  Score=157.67  Aligned_cols=416  Identities=17%  Similarity=0.186  Sum_probs=275.6

Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHH
Q 011328           34 AMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVI  113 (488)
Q Consensus        34 ~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~  113 (488)
                      ..++.+...++.+|-..-..++.+++.......     ..++|.|.++|.+++ ....+.|..+|..+++++.+.-+.=+
T Consensus        94 ~~l~~lgd~~~lIr~tvGivITTI~s~~~~~~w-----pelLp~L~~~L~s~d-~n~~EgA~~AL~KIcEDsa~~lds~~  167 (885)
T KOG2023|consen   94 ECLHGLGDASPLIRATVGIVITTIASTGGLQHW-----PELLPQLCELLDSPD-YNTCEGAFGALQKICEDSAQFLDSDV  167 (885)
T ss_pred             HHHhhccCchHHHHhhhhheeeeeecccccccc-----hhHHHHHHHHhcCCc-ccccchhHHHHHHHHhhhHHHHhhhc
Confidence            466667777777776666666676665422222     468999999999999 78999999999999997765544321


Q ss_pred             hC----CCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhc-CChHHHHHHhcccccHhHHHHHHHHHHHhhc
Q 011328          114 DH----GAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSN-GALMPLLAQFNEHAKLSMLRNATWTLSNFCR  188 (488)
Q Consensus       114 ~~----g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~  188 (488)
                      ..    -.+|.++++.+++++.+|..|+.++..+....+.  ...... ..++.+..+- .+.++.||.+.|.++..|..
T Consensus       168 ~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~q--al~~~iD~Fle~lFala-nD~~~eVRk~vC~alv~Lle  244 (885)
T KOG2023|consen  168 LTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQ--ALYVHIDKFLEILFALA-NDEDPEVRKNVCRALVFLLE  244 (885)
T ss_pred             ccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcH--HHHHHHHHHHHHHHHHc-cCCCHHHHHHHHHHHHHHHH
Confidence            11    3578999999999999999999999988755432  122221 2455555555 88899999999999999999


Q ss_pred             CCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHH-------------------------------
Q 011328          189 GKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQA-------------------------------  237 (488)
Q Consensus       189 ~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~-------------------------------  237 (488)
                      ..+.+-.....++++.+++..++.|.+|...|+.....+++.+.. ...                               
T Consensus       245 vr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~-~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~ee  323 (885)
T KOG2023|consen  245 VRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPIC-KEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEE  323 (885)
T ss_pred             hcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCc-HHHHHHHHHHHHHHHHccCccccccHHHhcCccc
Confidence            888888888899999999999999999999998888877764311 010                               


Q ss_pred             -------------------------------------------------------------HHHhCCHHH----HHHhcC
Q 011328          238 -------------------------------------------------------------VIEAGVCPR----LVELLR  252 (488)
Q Consensus       238 -------------------------------------------------------------~~~~~~l~~----L~~lL~  252 (488)
                                                                                   +....+++.    |-..|.
T Consensus       324 D~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~elL~~l~PlLk~~L~  403 (885)
T KOG2023|consen  324 DESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDELLPILLPLLKEHLS  403 (885)
T ss_pred             cccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhHHHHHHHHHHHHHHHcC
Confidence                                                                         111123333    333344


Q ss_pred             CCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcC--CHHHHHHHHHcCChH
Q 011328          253 HPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG--NVNQIQAIIEAGIIG  330 (488)
Q Consensus       253 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~--~~~~~~~l~~~~~l~  330 (488)
                      ++++.+|+++..+++.++.+.-...-.-+ ..+++.++.+|.+. .+-||..+||+|+..+..  ..+ .+..+. .++.
T Consensus       404 ~~~W~vrEagvLAlGAIAEGcM~g~~p~L-peLip~l~~~L~DK-kplVRsITCWTLsRys~wv~~~~-~~~~f~-pvL~  479 (885)
T KOG2023|consen  404 SEEWKVREAGVLALGAIAEGCMQGFVPHL-PELIPFLLSLLDDK-KPLVRSITCWTLSRYSKWVVQDS-RDEYFK-PVLE  479 (885)
T ss_pred             cchhhhhhhhHHHHHHHHHHHhhhcccch-HHHHHHHHHHhccC-ccceeeeeeeeHhhhhhhHhcCC-hHhhhH-HHHH
Confidence            56667777777777777764322111111 13688899999999 999999999999998861  112 222222 2566


Q ss_pred             HHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCC
Q 011328          331 PLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNT  410 (488)
Q Consensus       331 ~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~  410 (488)
                      .|++.+-+++..|++.|+.+++.+-.....+..+++..  .+..|+..+.....+-......+++.+..+....-..   
T Consensus       480 ~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~--IL~~l~~af~kYQ~KNLlILYDAIgtlAdsvg~~Ln~---  554 (885)
T KOG2023|consen  480 GLLRRLLDSNKKVQEAACSAFATLEEEAGEELVPYLEY--ILDQLVFAFGKYQKKNLLILYDAIGTLADSVGHALNK---  554 (885)
T ss_pred             HHHHHHhcccHHHHHHHHHHHHHHHHhccchhHHHHHH--HHHHHHHHHHHHhhcceehHHHHHHHHHHHHHHhcCc---
Confidence            67777777889999999999999988777676665433  4455555444222222222334444444433211100   


Q ss_pred             CccchHHHHHHhhccHHHHHHhhcC------------------------CCHHHHHHHHHHHHHhcCCCCCCCCCCCCCC
Q 011328          411 GGVNLFAQAIDDAEGLEKIENLQSH------------------------DNTEIYEKAVKILETYWVEEDEDEPLPPGDA  466 (488)
Q Consensus       411 ~~~~~~~~~l~~~g~~~~L~~l~~~------------------------~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~  466 (488)
                         ..|.+.+. --.+++...+.++                        -.+.|+.++..++++.....-....+|++++
T Consensus       555 ---~~YiqiLm-PPLi~KW~~lsd~DKdLfPLLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~  630 (885)
T KOG2023|consen  555 ---PAYIQILM-PPLIEKWELLSDSDKDLFPLLECLSSIASALGVGFLPYAQPVYQRCFRILQKTLQLLAKVQQDPTVEA  630 (885)
T ss_pred             ---HHHHHHhc-cHHHHHHHhcCcccchHHHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHhccCCccccC
Confidence               00111111 1112222222211                        2478999999999988777888888999999


Q ss_pred             CCCccc
Q 011328          467 TQAGFG  472 (488)
Q Consensus       467 ~~~~~~  472 (488)
                      |.|+|-
T Consensus       631 pdkdfi  636 (885)
T KOG2023|consen  631 PDKDFI  636 (885)
T ss_pred             CCcceE
Confidence            999983

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.76  E-value=4.2e-15  Score=149.69  Aligned_cols=392  Identities=17%  Similarity=0.153  Sum_probs=273.8

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCc---
Q 011328           30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTS---  106 (488)
Q Consensus        30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~---  106 (488)
                      +.++.|.++.+|+++..|..|+..|..+...-++.....+.  .+.+.+.+.+.+++. .+|..|+++++.++...+   
T Consensus       118 ell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~--~l~~lf~q~~~d~s~-~vr~~a~rA~~a~~~~~~~~~  194 (1075)
T KOG2171|consen  118 ELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLD--DLLRLFSQTMTDPSS-PVRVAAVRALGAFAEYLENNK  194 (1075)
T ss_pred             HHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHH--HHHHHHHHhccCCcc-hHHHHHHHHHHHHHHHhccch
Confidence            34555666667999999999999999987655333332222  356777788888884 499999999999887443   


Q ss_pred             hhhHHHHhCCCHHHHHHhh----CCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhc-ccccHhHHHHHHH
Q 011328          107 ENTRVVIDHGAVPIFVRLL----SSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN-EHAKLSMLRNATW  181 (488)
Q Consensus       107 ~~~~~~~~~g~i~~L~~~L----~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~-~~~~~~v~~~a~~  181 (488)
                      ..+..+.  ..+|.++..+    ..++.+....++.+|..++...+.+-...+. .++...+.... ++-+..+|..|+.
T Consensus       195 ~~~~~~~--~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~-~ii~~~l~Ia~n~~l~~~~R~~ALe  271 (1075)
T KOG2171|consen  195 SEVDKFR--DLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLS-QIIQFSLEIAKNKELENSIRHLALE  271 (1075)
T ss_pred             HHHHHHH--HHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHH-HHHHHHHHHhhcccccHHHHHHHHH
Confidence            2233332  3456565555    4477777888999999998877665333322 13333344442 3447889999999


Q ss_pred             HHHHhhcCCCCC---ChhhhhchHHHHHHhhccC--C--------------hhHHHHHHHHHHHhccCCchhHHHHHHhC
Q 011328          182 TLSNFCRGKPQP---LFEQTRPALPALERLIHSN--D--------------DEVLTDACWALSYLSDGTNDKIQAVIEAG  242 (488)
Q Consensus       182 ~L~~l~~~~~~~---~~~~~~~~~~~l~~ll~~~--~--------------~~v~~~al~~L~~l~~~~~~~~~~~~~~~  242 (488)
                      +|..++++.+..   ........++.++.++...  |              ..--..|..++-.++.+=+..   .+-.-
T Consensus       272 ~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~---~v~p~  348 (1075)
T KOG2171|consen  272 FLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGK---QVLPP  348 (1075)
T ss_pred             HHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChh---hehHH
Confidence            999999884322   2224456777777776421  1              113455666777766543321   11124


Q ss_pred             CHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHH
Q 011328          243 VCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQA  322 (488)
Q Consensus       243 ~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~  322 (488)
                      +++.+-.++.++++.-|.+++.+|+.++.+........++ .+++.++..|+++ ++.||..|+.+++.++..-...++.
T Consensus       349 ~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~-~Il~~Vl~~l~Dp-hprVr~AA~naigQ~stdl~p~iqk  426 (1075)
T KOG2171|consen  349 LFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLP-KILPIVLNGLNDP-HPRVRYAALNAIGQMSTDLQPEIQK  426 (1075)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHH-HHHHHHHhhcCCC-CHHHHHHHHHHHHhhhhhhcHHHHH
Confidence            5677888889999999999999999999998877666555 6889999999999 9999999999999999876666666


Q ss_pred             HHHcCChHHHHHHHhcC-ChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChH-HHHhhcCCCCHHHHHHHHHHHHHHHHh
Q 011328          323 IIEAGIIGPLVNLLLNA-EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIK-PLCDLLNCPDPRIVTVCLEGLENILKA  400 (488)
Q Consensus       323 l~~~~~l~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~-~L~~ll~~~~~~v~~~al~~L~~l~~~  400 (488)
                      -....+.+.|+..+.+. ++.|+..|+.++.|++..+..+....... ++++ .|..++.++.+.+++.++.+|..+...
T Consensus       427 ~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd-~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~A  505 (1075)
T KOG2171|consen  427 KHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLD-GLMEKKLLLLLQSSKPYVQEQAVTAIASVADA  505 (1075)
T ss_pred             HHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHH-HHHHHHHHHHhcCCchhHHHHHHHHHHHHHHH
Confidence            66667888999999886 77999999999999998876665544333 4666 455566678889999999999999877


Q ss_pred             hhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCC-HHHHHHHHH
Q 011328          401 GEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDN-TEIYEKAVK  446 (488)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~~~-~~v~~~a~~  446 (488)
                      .+..           |...+.+.  ++.|..++.+.+ ++.+....+
T Consensus       506 A~~~-----------F~pY~d~~--Mp~L~~~L~n~~~~d~r~Lrgk  539 (1075)
T KOG2171|consen  506 AQEK-----------FIPYFDRL--MPLLKNFLQNADDKDLRELRGK  539 (1075)
T ss_pred             Hhhh-----------hHhHHHHH--HHHHHHHHhCCCchhhHHHHhh
Confidence            6543           44444443  666777754443 444433333

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.74  E-value=3.4e-15  Score=136.25  Aligned_cols=379  Identities=17%  Similarity=0.128  Sum_probs=289.4

Q ss_pred             CCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHH
Q 011328           42 DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIF  121 (488)
Q Consensus        42 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L  121 (488)
                      ..+++...|++.|.+++..  ...-..+...+++..|++.|..++ .++.......|..++- -.+++..+.+.|+++.|
T Consensus       275 KQeqLLrva~ylLlNlAed--~~~ElKMrrkniV~mLVKaLdr~n-~~Ll~lv~~FLkKLSI-f~eNK~~M~~~~iveKL  350 (791)
T KOG1222|consen  275 KQEQLLRVAVYLLLNLAED--ISVELKMRRKNIVAMLVKALDRSN-SSLLTLVIKFLKKLSI-FDENKIVMEQNGIVEKL  350 (791)
T ss_pred             HHHHHHHHHHHHHHHHhhh--hhHHHHHHHHhHHHHHHHHHcccc-hHHHHHHHHHHHHhhh-hccchHHHHhccHHHHH
Confidence            4455566788888998764  344566778899999999999988 7888888888998887 67889999999999999


Q ss_pred             HHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhch
Q 011328          122 VRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPA  201 (488)
Q Consensus       122 ~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~  201 (488)
                      ++++...+++++...+..+.|++.++. .+..++..|.+|.+..++..+..   ...|+..+..++.++..+.......+
T Consensus       351 ~klfp~~h~dL~~~tl~LlfNlSFD~g-lr~KMv~~GllP~l~~ll~~d~~---~~iA~~~lYh~S~dD~~K~MfayTdc  426 (791)
T KOG1222|consen  351 LKLFPIQHPDLRKATLMLLFNLSFDSG-LRPKMVNGGLLPHLASLLDSDTK---HGIALNMLYHLSCDDDAKAMFAYTDC  426 (791)
T ss_pred             HHhcCCCCHHHHHHHHHHhhhcccccc-ccHHHhhccchHHHHHHhCCccc---chhhhhhhhhhccCcHHHHHHHHHHH
Confidence            999999999999999999999998765 67888899999999999944333   23467778888887766666777889


Q ss_pred             HHHHHHhhcc-CChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhc-CCCCcchHhHHHHHHhHhhcCCchhhHH
Q 011328          202 LPALERLIHS-NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL-RHPSPSVLIPALRTVGNIVTGDDMQTQC  279 (488)
Q Consensus       202 ~~~l~~ll~~-~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~  279 (488)
                      ++.+++.+-+ .+.++-...+..-.|++.+.. ..+.+++..++..|++.- +..++    .-...+.+++.+.......
T Consensus       427 i~~lmk~v~~~~~~~vdl~lia~ciNl~lnkR-NaQlvceGqgL~~LM~ra~k~~D~----lLmK~vRniSqHeg~tqn~  501 (791)
T KOG1222|consen  427 IKLLMKDVLSGTGSEVDLALIALCINLCLNKR-NAQLVCEGQGLDLLMERAIKSRDL----LLMKVVRNISQHEGATQNM  501 (791)
T ss_pred             HHHHHHHHHhcCCceecHHHHHHHHHHHhccc-cceEEecCcchHHHHHHHhcccch----HHHHHHHHhhhccchHHHH
Confidence            9988877654 355565555555556775543 335566666777777654 33332    2356677888766544444


Q ss_pred             HhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC--ChhHHHHHHHHHHHhccC
Q 011328          280 IINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA--EFEIKKEAAWAISNATSG  357 (488)
Q Consensus       280 ~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~--~~~v~~~a~~aL~~l~~~  357 (488)
                      +++  .+.-|..+++...+...-.+++.+++|+...+-+-.+.+-+.+++|.+-..|..+  ..++......+++.++..
T Consensus       502 Fid--yvgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d  579 (791)
T KOG1222|consen  502 FID--YVGDLAGIAKNDNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARD  579 (791)
T ss_pred             HHH--HHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhh
Confidence            444  4666777777665777888999999999886566556666788999999988876  567888888899999864


Q ss_pred             CCHHHHHHHHHCCChHHHHhhcCC--CCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcC
Q 011328          358 GSNEQIKFLVSQGCIKPLCDLLNC--PDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSH  435 (488)
Q Consensus       358 ~~~~~~~~l~~~~~i~~L~~ll~~--~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~  435 (488)
                        ...+..+..+++++.|+++|+.  .|.+++.+.+..+..++.....            ..-++.+...-..+..++++
T Consensus       580 --~~cA~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~He~t------------r~~miket~~~AylIDLMHD  645 (791)
T KOG1222|consen  580 --LDCARLLAPAKLIDTLIELLQACQEDDEFVVQIIYVFLQFLKHELT------------RRLMIKETALGAYLIDLMHD  645 (791)
T ss_pred             --hHHHHHhCccccHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHH------------HHHHHhhccchHHHHHHHhc
Confidence              4778888889999999999984  5678888888888888876332            24556777778899999999


Q ss_pred             CCHHHHHHHHHHHH
Q 011328          436 DNTEIYEKAVKILE  449 (488)
Q Consensus       436 ~~~~v~~~a~~~l~  449 (488)
                      .|.++++.+...+.
T Consensus       646 kN~eiRkVCDn~Ld  659 (791)
T KOG1222|consen  646 KNAEIRKVCDNALD  659 (791)
T ss_pred             ccHHHHHHHHHHHH
Confidence            99999987766553

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=99.73  E-value=4.2e-15  Score=133.90  Aligned_cols=404  Identities=13%  Similarity=0.069  Sum_probs=295.7

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCC------CChhHHHHHHHHHHHhcC
Q 011328           30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRD------DFPQLQFEAAWALTNIAS  103 (488)
Q Consensus        30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~------~~~~v~~~a~~~L~~l~~  103 (488)
                      +.++.|.+...|++.++-.+..++|.++...+ .+.+..+.+.|+-..+++.|+..      .+.+.-.-++..|.|...
T Consensus        87 ~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn-~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l  165 (604)
T KOG4500|consen   87 EALELLRQTPSSPDTEVHEQCFRALGNICYDN-NENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYIL  165 (604)
T ss_pred             HHHHHHHhCCCCCcccHHHHHHHHHhhhhccC-chhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhC
Confidence            56777778888999999999999999987765 78899999999977777777632      123555667778999998


Q ss_pred             CCchhhHHHHhCCCHHHHHHhhCC--CCHHHHHHHHHHHhhhhCCC-chhHHHHHhcCChHHHHHHhcccccHhHHHHHH
Q 011328          104 GTSENTRVVIDHGAVPIFVRLLSS--PTDDVREQAVWALGNVAGDS-PKCRDLVLSNGALMPLLAQFNEHAKLSMLRNAT  180 (488)
Q Consensus       104 ~~~~~~~~~~~~g~i~~L~~~L~~--~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~  180 (488)
                      ++.+.+..+++.|+++.|...+.-  .+....+..+....|+.+-. ....+...+......+++++.....+++.+.+.
T Consensus       166 ~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~f  245 (604)
T KOG4500|consen  166 DSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIF  245 (604)
T ss_pred             CcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHH
Confidence            899999999999999999887653  66677777666666664321 112344555667778888887777888899999


Q ss_pred             HHHHHhhcCCCCCChhhhhchHHHHHHhhcc-CCh-------hHHHHHHHHHHHhccCCchhHHHHHHhC-CHHHHHHhc
Q 011328          181 WTLSNFCRGKPQPLFEQTRPALPALERLIHS-NDD-------EVLTDACWALSYLSDGTNDKIQAVIEAG-VCPRLVELL  251 (488)
Q Consensus       181 ~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~-~~~-------~v~~~al~~L~~l~~~~~~~~~~~~~~~-~l~~L~~lL  251 (488)
                      ..+...+.++..+-.....|.+..+..+++. .+.       .....++....-+..++ +.++.+...+ +++.+.+++
T Consensus       246 eila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGD-eSMq~L~~~p~~l~~~~sw~  324 (604)
T KOG4500|consen  246 EILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGD-ESMQKLHADPQFLDFLESWF  324 (604)
T ss_pred             HHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCc-hHHHHHhcCcHHHHHHHHHh
Confidence            9999999988777777778889999888875 221       22233333333333333 4456566655 899999999


Q ss_pred             CCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhccc----chhhHHHHHHHHHHHHhcCCHHHHHHHHHcC
Q 011328          252 RHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQN----YKKSIKKEACWTISNITAGNVNQIQAIIEAG  327 (488)
Q Consensus       252 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~----~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~  327 (488)
                      .+.+......+.-+++|+++ ++....++++.+++..|++.+...    .+-+++..++.+|.|++-. ..+...++..|
T Consensus       325 ~S~d~~l~t~g~LaigNfaR-~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IP-v~nka~~~~aG  402 (604)
T KOG4500|consen  325 RSDDSNLITMGSLAIGNFAR-RDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIP-VSNKAHFAPAG  402 (604)
T ss_pred             cCCchhHHHHHHHHHHhhhc-cchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhcccc-CCchhhccccc
Confidence            99999999999999999999 455667788889999999988541    1567788999999999875 34466788899


Q ss_pred             ChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHH-HCCChHHHHhhcCCCCHH-HHHHHHHHHHHHHHhhhhhh
Q 011328          328 IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLV-SQGCIKPLCDLLNCPDPR-IVTVCLEGLENILKAGEAEK  405 (488)
Q Consensus       328 ~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~-~~~~i~~L~~ll~~~~~~-v~~~al~~L~~l~~~~~~~~  405 (488)
                      +.+.++..++...+.|...-+..+.-+.... +-..-.+. ....++.|++.-+++|.. +.-...+.+.-+++......
T Consensus       403 vteaIL~~lk~~~ppv~fkllgTlrM~~d~q-e~~a~eL~kn~~l~ekLv~Wsks~D~aGv~gESnRll~~lIkHs~~kd  481 (604)
T KOG4500|consen  403 VTEAILLQLKLASPPVTFKLLGTLRMIRDSQ-EYIACELAKNPELFEKLVDWSKSPDFAGVAGESNRLLLGLIKHSKYKD  481 (604)
T ss_pred             hHHHHHHHHHhcCCcchHHHHHHHHHHHhch-HHHHHHHhcCHHHHHHHHHhhhCCccchhhhhhhHHHHHHHHhhHhhh
Confidence            9999999999999999999888888776543 22333333 235577777777777754 55555555555555433111


Q ss_pred             ccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHH
Q 011328          406 NMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKIL  448 (488)
Q Consensus       406 ~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~~~~~v~~~a~~~l  448 (488)
                                ....+-+.|+++....+..+.+-.++..|...+
T Consensus       482 ----------v~~tvpksg~ik~~Vsm~t~~hi~mqnEalVal  514 (604)
T KOG4500|consen  482 ----------VILTVPKSGGIKEKVSMFTKNHINMQNEALVAL  514 (604)
T ss_pred             ----------hHhhccccccHHHHHHHHHHhhHHHhHHHHHHH
Confidence                      244456788888888888777777776666554

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.73  E-value=4.2e-15  Score=129.76  Aligned_cols=310  Identities=12%  Similarity=0.127  Sum_probs=253.8

Q ss_pred             cCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCC-CChhHHHHHHHHHHHhcCCCchhhHHHHhCCCH
Q 011328           40 WSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRD-DFPQLQFEAAWALTNIASGTSENTRVVIDHGAV  118 (488)
Q Consensus        40 ~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i  118 (488)
                      .+++..+...++.+|..+..+. +    .+.+..++..++.+|... ++.++....+.++..-+...+.+|+.+++.+++
T Consensus       117 ~~~~~~~l~ksL~al~~lt~~q-p----dl~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il  191 (461)
T KOG4199|consen  117 ESPNESVLKKSLEAINSLTHKQ-P----DLFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKIL  191 (461)
T ss_pred             hCCchhHHHHHHHHHHHhhcCC-c----chhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHH
Confidence            3577778888888888876553 2    345677889999998543 237888888889988888889999999999999


Q ss_pred             HHHHHhhCC-CCHHHHHHHHHHHhhhhCCCc---------hhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhc
Q 011328          119 PIFVRLLSS-PTDDVREQAVWALGNVAGDSP---------KCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR  188 (488)
Q Consensus       119 ~~L~~~L~~-~~~~v~~~a~~~L~~l~~~~~---------~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~  188 (488)
                      +.+...+.. +..++.+.+.|++..+..+++         +..+.+...+++..|++.+.-.-++.+...++.+|..++-
T Consensus       192 ~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAV  271 (461)
T KOG4199|consen  192 ELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAV  271 (461)
T ss_pred             HHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHH
Confidence            999987765 444677788999999876543         2345677778889999999767789999999999999998


Q ss_pred             CCCCCChhhhhchHHHHHHhhccC-Ch---hHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcC--CCCcchHhHH
Q 011328          189 GKPQPLFEQTRPALPALERLIHSN-DD---EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR--HPSPSVLIPA  262 (488)
Q Consensus       189 ~~~~~~~~~~~~~~~~l~~ll~~~-~~---~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~--~~~~~v~~~a  262 (488)
                      .++........|++..+++++.+. +.   .....++..|+.++.+++ ....+++.|+.+.++.++.  +.+|.+...+
T Consensus       272 r~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~Ds-vKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~  350 (461)
T KOG4199|consen  272 RDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDS-VKSTIVEKGGLDKIITLALRHSDDPLVIQEV  350 (461)
T ss_pred             HHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCc-hHHHHHHhcChHHHHHHHHHcCCChHHHHHH
Confidence            877777788899999999999873 33   355778888888887665 4577999999999999874  3678999999


Q ss_pred             HHHHhHhhcCCchhhHHHhhCCChHHHHHHhc-ccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCh
Q 011328          263 LRTVGNIVTGDDMQTQCIINHQALPCLLDLLT-QNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEF  341 (488)
Q Consensus       263 ~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~-~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~  341 (488)
                      +.+++-++-..++....+++.|+-...++.|+ ++....+++.++|.+.|++.++.+++..++.. .++.|+..-...++
T Consensus       351 ~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~-GiE~Li~~A~~~h~  429 (461)
T KOG4199|consen  351 MAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLAN-GIEKLIRTAKANHE  429 (461)
T ss_pred             HHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHhc-cHHHHHHHHHhcCc
Confidence            99999999999999999999999999999885 55567899999999999999878887777775 67888888888888


Q ss_pred             hHHHHHHHHHHHhcc
Q 011328          342 EIKKEAAWAISNATS  356 (488)
Q Consensus       342 ~v~~~a~~aL~~l~~  356 (488)
                      .....|-.+|..+-.
T Consensus       430 tce~~akaALRDLGc  444 (461)
T KOG4199|consen  430 TCEAAAKAALRDLGC  444 (461)
T ss_pred             cHHHHHHHHHHhcCc
Confidence            898889999988854

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=99.72  E-value=4.2e-15  Score=150.98  Aligned_cols=363  Identities=19%  Similarity=0.207  Sum_probs=274.8

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCC--ChhHHHHHHHHHHHhcCCCchhh
Q 011328           32 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDD--FPQLQFEAAWALTNIASGTSENT  109 (488)
Q Consensus        32 i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~--~~~v~~~a~~~L~~l~~~~~~~~  109 (488)
                      ...++..+...|++   .-.+.|..+.+.  .+....+...|.++.|+++|.-++  ..+.+..|-.+|.||....++.+
T Consensus       199 s~sllsml~t~D~e---e~ar~fLemSss--~esCaamR~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~k  273 (2195)
T KOG2122|consen  199 SNSLLSMLGTDDEE---EMARTFLEMSSS--PESCAAMRRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEK  273 (2195)
T ss_pred             hhHHhhhcccCCHH---HHHHHHHHhccC--chhhHHHHhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchh
Confidence            34566666666654   335556664433  566788889999999999998654  25788889999999998666554


Q ss_pred             HHHHhCCCHHHHH---H-------hhCC-----CC--HHHH-HHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhc---
Q 011328          110 RVVIDHGAVPIFV---R-------LLSS-----PT--DDVR-EQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN---  168 (488)
Q Consensus       110 ~~~~~~g~i~~L~---~-------~L~~-----~~--~~v~-~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~---  168 (488)
                      ..-.+..++..|-   .       ++..     ..  .+-+ ..|+.+|..++.+ .+.|..+-+.|+++.+-+++.   
T Consensus       274 r~RRE~kvL~lLeQIraYC~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~SFD-EEhR~aM~ELG~LqAIaeLl~vDh  352 (2195)
T KOG2122|consen  274 RGRREKKVLHLLEQIRAYCETCWTWLQARGPAIAPASDEHQLCAALCTLMKLSFD-EEHRHAMNELGGLQAIAELLQVDH  352 (2195)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccchhhHHHHHHHHHhhcc-HHHHHHHHHhhhHHHHHHHHHHHH
Confidence            3333333333332   1       2222     11  1222 2566666666655 567999999999999988773   


Q ss_pred             --------ccccHhHHHHHHHHHHHhhcCCC-CCChh-hhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHH
Q 011328          169 --------EHAKLSMLRNATWTLSNFCRGKP-QPLFE-QTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAV  238 (488)
Q Consensus       169 --------~~~~~~v~~~a~~~L~~l~~~~~-~~~~~-~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~  238 (488)
                              +.....+++++..+|.||+.++. ++..+ ...|++..++..|.+...++..-...+|.||+...+..++.+
T Consensus       353 ~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkv  432 (2195)
T KOG2122|consen  353 EMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKV  432 (2195)
T ss_pred             HhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHH
Confidence                    12245789999999999999883 33333 347999999999998888999999999999997766555554


Q ss_pred             H-HhCCHHHHHHh-cCCCCcchHhHHHHHHhHhhcCCchhhHHHh-hCCChHHHHHHhcccc---hhhHHHHHHHHHHHH
Q 011328          239 I-EAGVCPRLVEL-LRHPSPSVLIPALRTVGNIVTGDDMQTQCII-NHQALPCLLDLLTQNY---KKSIKKEACWTISNI  312 (488)
Q Consensus       239 ~-~~~~l~~L~~l-L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~~~~L~~lL~~~~---~~~v~~~a~~~L~nl  312 (488)
                      + +.|-+..|..+ |+...+......+.+||||+.+..++...+- -.|.+..|+.+|....   .-.+...+..+|.|.
T Consensus       433 LrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNV  512 (2195)
T KOG2122|consen  433 LRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNV  512 (2195)
T ss_pred             HHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHH
Confidence            4 45777777766 4556667888999999999998777665554 4588999999996541   345677888888888


Q ss_pred             hc---CCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHH
Q 011328          313 TA---GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTV  389 (488)
Q Consensus       313 ~~---~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~  389 (488)
                      +.   ....+++.+.+++++..|+..|++.+..+..++|.+|.||... +++.-++|++.|.+..|.+++++.+..+..-
T Consensus       513 SS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR-~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~G  591 (2195)
T KOG2122|consen  513 SSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR-SPEDQQMLWDDGAVPMLRNLIHSKHKMIAMG  591 (2195)
T ss_pred             HhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcC-CHHHHHHHHhcccHHHHHHHHhhhhhhhhhh
Confidence            76   4678888899999999999999999999999999999999875 4677789999999999999999999999999


Q ss_pred             HHHHHHHHHHhh
Q 011328          390 CLEGLENILKAG  401 (488)
Q Consensus       390 al~~L~~l~~~~  401 (488)
                      +..+|.|++..-
T Consensus       592 SaaALrNLln~R  603 (2195)
T KOG2122|consen  592 SAAALRNLLNFR  603 (2195)
T ss_pred             HHHHHHHHhcCC
Confidence            999999998654

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.70  E-value=7.8e-14  Score=127.50  Aligned_cols=361  Identities=15%  Similarity=0.155  Sum_probs=280.3

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh
Q 011328           30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT  109 (488)
Q Consensus        30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~  109 (488)
                      ..+..|++.|..++.++.......|.++.-.  .++...+.+.|++..|++++.... ++++...+..+.|++. +...|
T Consensus       304 niV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf--~eNK~~M~~~~iveKL~klfp~~h-~dL~~~tl~LlfNlSF-D~glr  379 (791)
T KOG1222|consen  304 NIVAMLVKALDRSNSSLLTLVIKFLKKLSIF--DENKIVMEQNGIVEKLLKLFPIQH-PDLRKATLMLLFNLSF-DSGLR  379 (791)
T ss_pred             hHHHHHHHHHcccchHHHHHHHHHHHHhhhh--ccchHHHHhccHHHHHHHhcCCCC-HHHHHHHHHHhhhccc-ccccc
Confidence            5677899999988888888888888886443  466788889999999999999999 9999999999999999 78899


Q ss_pred             HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcC
Q 011328          110 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG  189 (488)
Q Consensus       110 ~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~  189 (488)
                      ..++..|.+|.+..++.++.  -...|+..++.++.++. .+..+.....++.+++.+..+.+..+-...+...-|+|.+
T Consensus       380 ~KMv~~GllP~l~~ll~~d~--~~~iA~~~lYh~S~dD~-~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~ln  456 (791)
T KOG1222|consen  380 PKMVNGGLLPHLASLLDSDT--KHGIALNMLYHLSCDDD-AKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLN  456 (791)
T ss_pred             HHHhhccchHHHHHHhCCcc--cchhhhhhhhhhccCcH-HHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhc
Confidence            99999999999999997643  33457788888887655 5677777788998888876777777777777777899988


Q ss_pred             CCCCChhhhhchHHHHHHh-hccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCC-CCcchHhHHHHHHh
Q 011328          190 KPQPLFEQTRPALPALERL-IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH-PSPSVLIPALRTVG  267 (488)
Q Consensus       190 ~~~~~~~~~~~~~~~l~~l-l~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-~~~~v~~~a~~~L~  267 (488)
                      ..+.+.......+..+++. ++..|.-    ....+++++.+.......+++  .+..|...++. ++++....++.+++
T Consensus       457 kRNaQlvceGqgL~~LM~ra~k~~D~l----LmK~vRniSqHeg~tqn~Fid--yvgdLa~i~~nd~~E~F~~EClGtla  530 (791)
T KOG1222|consen  457 KRNAQLVCEGQGLDLLMERAIKSRDLL----LMKVVRNISQHEGATQNMFID--YVGDLAGIAKNDNSESFGLECLGTLA  530 (791)
T ss_pred             cccceEEecCcchHHHHHHHhcccchH----HHHHHHHhhhccchHHHHHHH--HHHHHHHHhhcCchHHHHHHHHHHHh
Confidence            8777777777788777765 3444442    345677888776644444553  45556666654 45667788999999


Q ss_pred             HhhcCCchhhHHHhhCCChHHHHHHhcccc-hhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC--ChhHH
Q 011328          268 NIVTGDDMQTQCIINHQALPCLLDLLTQNY-KKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA--EFEIK  344 (488)
Q Consensus       268 ~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~-~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~--~~~v~  344 (488)
                      ++....-...+.+.+...+|.+-..|+.+- ..++....+-+++.++.. ......+...++++.++++|+..  |.+..
T Consensus       531 nL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d-~~cA~Lla~a~~i~tlieLL~a~QeDDEfV  609 (791)
T KOG1222|consen  531 NLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARD-LDCARLLAPAKLIDTLIELLQACQEDDEFV  609 (791)
T ss_pred             hcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhh-hHHHHHhCccccHHHHHHHHHhhcccchHH
Confidence            998876677777778899999999987542 345667777777777664 45556666789999999999875  67777


Q ss_pred             HHHHHHHHHhccCCCHHHHHHH-HHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhc
Q 011328          345 KEAAWAISNATSGGSNEQIKFL-VSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKN  406 (488)
Q Consensus       345 ~~a~~aL~~l~~~~~~~~~~~l-~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~  406 (488)
                      .+.+.+...+..+.  ..+..+ .+...-..|++++++.+.++++.+-.+|..+...+....+
T Consensus       610 ~QiiyVF~Q~l~He--~tr~~miket~~~AylIDLMHDkN~eiRkVCDn~LdIiae~d~EWAK  670 (791)
T KOG1222|consen  610 VQIIYVFLQFLKHE--LTRRLMIKETALGAYLIDLMHDKNAEIRKVCDNALDIIAEHDKEWAK  670 (791)
T ss_pred             HHHHHHHHHHHHHH--HHHHHHHhhccchHHHHHHHhcccHHHHHHHHHHHHHHHHhhHHHHH
Confidence            88888888888763  333443 4567788999999999999999999999988887766544

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.69  E-value=1e-13  Score=121.20  Aligned_cols=317  Identities=15%  Similarity=0.178  Sum_probs=248.0

Q ss_pred             cCCHHHHHHhh---cCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCC--CCHHHHHHHHHHHhhhhCC
Q 011328           72 SGVVPRFIEFL---SRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS--PTDDVREQAVWALGNVAGD  146 (488)
Q Consensus        72 ~~~i~~L~~lL---~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~--~~~~v~~~a~~~L~~l~~~  146 (488)
                      .|..+.++-++   .+++ ..+-..++.+|..+..+.|+    +.+..++..++.+|..  ++.++....+..+..-|..
T Consensus       103 ~ga~~~~it~~~la~~~~-~~~l~ksL~al~~lt~~qpd----l~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~  177 (461)
T KOG4199|consen  103 NGAHDALITLLELAESPN-ESVLKKSLEAINSLTHKQPD----LFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIM  177 (461)
T ss_pred             CCCcchhhhHHHHhhCCc-hhHHHHHHHHHHHhhcCCcc----hhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHH
Confidence            34444444333   3455 67888889999888886665    4456678899998864  6788888888888888888


Q ss_pred             CchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCC----------hhhhhchHHHHHHhhccC-Chh
Q 011328          147 SPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPL----------FEQTRPALPALERLIHSN-DDE  215 (488)
Q Consensus       147 ~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~----------~~~~~~~~~~l~~ll~~~-~~~  215 (488)
                      +.-.|+.+++.++++-+..-+.......+.+.++|++..|...+....          .....+++..|++.+... ++.
T Consensus       178 hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~  257 (461)
T KOG4199|consen  178 HEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPD  257 (461)
T ss_pred             hHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCcc
Confidence            888899999999998888788666666889999999999987663221          122355678888888764 789


Q ss_pred             HHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCC-Ccc---hHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHH
Q 011328          216 VLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP-SPS---VLIPALRTVGNIVTGDDMQTQCIINHQALPCLLD  291 (488)
Q Consensus       216 v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~---v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~  291 (488)
                      +...++.+|..++-.+ +..+.+.+.|+++.++.++.+. +..   ....++..|..++. ++.....+++.|+.+.++.
T Consensus       258 ~L~~l~~tl~~lAVr~-E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG-~DsvKs~IV~~gg~~~ii~  335 (461)
T KOG4199|consen  258 SLVSLSTTLKALAVRD-EICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAG-SDSVKSTIVEKGGLDKIIT  335 (461)
T ss_pred             HHHHHHHHHHHHHHHH-HHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhC-CCchHHHHHHhcChHHHHH
Confidence            9999999999998765 4567799999999999999873 333   44567888888876 6667788889999999998


Q ss_pred             Hh-cccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC--ChhHHHHHHHHHHHhccCCCHHHHHHHHH
Q 011328          292 LL-TQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA--EFEIKKEAAWAISNATSGGSNEQIKFLVS  368 (488)
Q Consensus       292 lL-~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~~~~~~~~l~~  368 (488)
                      ++ ++..++.+..+++.+++-++..+|++...+++.|+-...++.++..  ...++++|++++.|++..+ .++...++.
T Consensus       336 l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs-~~~~~~~l~  414 (461)
T KOG4199|consen  336 LALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRS-AENRTILLA  414 (461)
T ss_pred             HHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhh-hhccchHHh
Confidence            76 4555889999999999999998899999999999999999988875  5579999999999999764 456666555


Q ss_pred             CCChHHHHhhcCCCCHHHHHHHHHHHHHH
Q 011328          369 QGCIKPLCDLLNCPDPRIVTVCLEGLENI  397 (488)
Q Consensus       369 ~~~i~~L~~ll~~~~~~v~~~al~~L~~l  397 (488)
                       .+++.|+..-+..++.....+-.+|+.+
T Consensus       415 -~GiE~Li~~A~~~h~tce~~akaALRDL  442 (461)
T KOG4199|consen  415 -NGIEKLIRTAKANHETCEAAAKAALRDL  442 (461)
T ss_pred             -ccHHHHHHHHHhcCccHHHHHHHHHHhc
Confidence             5678888877777777777776777655

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=99.69  E-value=1.7e-14  Score=136.83  Aligned_cols=380  Identities=14%  Similarity=0.115  Sum_probs=267.8

Q ss_pred             hhcCCCCChhhHHHHhhhccHHHHHHHhcCCC--HHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChh
Q 011328           12 FSLLKPMDPMFFIIQLQLESLPAMVAGVWSDD--RNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQ   89 (488)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~i~~l~~~L~s~~--~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~   89 (488)
                      ..|..+-+..+..     |.++.++.+++.++  .+.+...+..+....+++ ......+.+.+.++.|+++|.++++..
T Consensus        38 ig~~~~K~~~ik~-----GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~e-qd~v~svL~~~~ll~Ll~LLs~sD~~~  111 (678)
T KOG1293|consen   38 IGFTDNKETNIKL-----GAVELLLALLSLEDGSTELKNGFAVLLNSLFLGE-QDKVDSVLRIIELLKLLQLLSESDSLN  111 (678)
T ss_pred             hcCCCccchhhhh-----cchHHHHhhccccCCchhhhhhHHHHHHhHHhhc-cchHHHHHHHhhHHHHHHHhcCcchHh
Confidence            4455566666777     99999999998654  566666777777777776 777888999999999999999888678


Q ss_pred             HHHHHHHHHHHhcCCCchhhHHH--HhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHh
Q 011328           90 LQFEAAWALTNIASGTSENTRVV--IDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQF  167 (488)
Q Consensus        90 v~~~a~~~L~~l~~~~~~~~~~~--~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll  167 (488)
                      ++...++++..+.+.++..-..+  ....+++.+..++..+.......-+....+++... ..+..+.+.++.+.+.-++
T Consensus       112 ~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~s~~lk~~~~l~~~~~a~~s~~~-~hq~Il~Na~i~ekI~~l~  190 (678)
T KOG1293|consen  112 VLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLYSIELKYISRLDVSRAAHLSSTK-DHQLILCNAGILEKINILL  190 (678)
T ss_pred             HHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhccccccc-hhhheeccccchhhHHHHH
Confidence            99999999999998553332222  23345566555555345555555555566665544 4455666666666665555


Q ss_pred             cccccHhHHHHHHHHHH---HhhcCCCCCChhh-----hhchHH--HHHHhhccCChhHHHHHHHHHHHhccCCchh---
Q 011328          168 NEHAKLSMLRNATWTLS---NFCRGKPQPLFEQ-----TRPALP--ALERLIHSNDDEVLTDACWALSYLSDGTNDK---  234 (488)
Q Consensus       168 ~~~~~~~v~~~a~~~L~---~l~~~~~~~~~~~-----~~~~~~--~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~---  234 (488)
                       ...+...+..|+.+++   ++..+++......     ..++.+  .+.+++++++...+..++.++.++...+.+.   
T Consensus       191 -~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~sl~cl~~~~~~s~~~d~l  269 (678)
T KOG1293|consen  191 -MYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERLRSLECLVPYLRKSFNYDPL  269 (678)
T ss_pred             -HhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHHHHHHHHHHHHhcccccccc
Confidence             6667788899999998   6666654333222     244554  4556777777777777777777666433100   


Q ss_pred             -------------H-H----------------------------------HHHHhCCHHHHHHh----------------
Q 011328          235 -------------I-Q----------------------------------AVIEAGVCPRLVEL----------------  250 (488)
Q Consensus       235 -------------~-~----------------------------------~~~~~~~l~~L~~l----------------  250 (488)
                                   . +                                  ...+....+.+.++                
T Consensus       270 ~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~ellf~~~sl~a~~~~~~~  349 (678)
T KOG1293|consen  270 PWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTTELLFICASLAASDEKYRL  349 (678)
T ss_pred             ccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHHHHHHHHHHHhhcchhhhH
Confidence                         0 0                                  00000011111111                


Q ss_pred             ------------------------------------cCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhc
Q 011328          251 ------------------------------------LRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLT  294 (488)
Q Consensus       251 ------------------------------------L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~  294 (488)
                                                          ....+...+.+|+.++.++++.-...+..+-...+...+++++.
T Consensus       350 i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~  429 (678)
T KOG1293|consen  350 ILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLM  429 (678)
T ss_pred             HHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhh
Confidence                                                11123345566666666666543333333446678999999998


Q ss_pred             ccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHH
Q 011328          295 QNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKP  374 (488)
Q Consensus       295 ~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~  374 (488)
                      .+ +..++..+..+++|+..........++.+|+++.+.+++.+.++.++..+.|+|.++..+++......+...-....
T Consensus       430 dp-~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~  508 (678)
T KOG1293|consen  430 DP-EIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANL  508 (678)
T ss_pred             Cc-chhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHH
Confidence            88 99999999999999999777778899999999999999999999999999999999999987777777766666777


Q ss_pred             HHhhcCCCCHHHHHHHHHHHHHHHHh
Q 011328          375 LCDLLNCPDPRIVTVCLEGLENILKA  400 (488)
Q Consensus       375 L~~ll~~~~~~v~~~al~~L~~l~~~  400 (488)
                      +..+.+++++.|+++++..++|+...
T Consensus       509 i~~l~nd~d~~Vqeq~fqllRNl~c~  534 (678)
T KOG1293|consen  509 ILDLINDPDWAVQEQCFQLLRNLTCN  534 (678)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhhcC
Confidence            88888999999999999999999765

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=99.66  E-value=2.2e-13  Score=129.51  Aligned_cols=407  Identities=15%  Similarity=0.100  Sum_probs=277.8

Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCC-ChhHHHHHHHHHHHhcCCCchhhHHH
Q 011328           34 AMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDD-FPQLQFEAAWALTNIASGTSENTRVV  112 (488)
Q Consensus        34 ~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~  112 (488)
                      .++..+.+.+|+...+|.+-..+++.+. ++....+++.|.++.+..+++..+ ..+.+...+.++...+.+.......+
T Consensus        13 ~~l~~L~~~dpe~lvrai~~~kN~vig~-~~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~sv   91 (678)
T KOG1293|consen   13 DLLYRLLHLDPEQLVRAIYMSKNLVIGF-TDNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSV   91 (678)
T ss_pred             HHHHhhhcCCHHHHHHHHHHhcchhhcC-CCccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHH
Confidence            4566677888999999999999988776 555567899999999999987654 25677677778888888788888999


Q ss_pred             HhCCCHHHHHHhhCCCC-HHHHHHHHHHHhhhhCCCchhHHHH--HhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcC
Q 011328          113 IDHGAVPIFVRLLSSPT-DDVREQAVWALGNVAGDSPKCRDLV--LSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG  189 (488)
Q Consensus       113 ~~~g~i~~L~~~L~~~~-~~v~~~a~~~L~~l~~~~~~~~~~~--~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~  189 (488)
                      .+.+.++.|.+++.+.+ ..+++..++++.++.+.++......  .....+..+..++ ..+...+...-+....+++..
T Consensus        92 L~~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~-s~~lk~~~~l~~~~~a~~s~~  170 (678)
T KOG1293|consen   92 LRIIELLKLLQLLSESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLY-SIELKYISRLDVSRAAHLSST  170 (678)
T ss_pred             HHHhhHHHHHHHhcCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHH-hhhhhhhhhhhhhhhcccccc
Confidence            99999999999999987 8999999999999987664321111  1112222222222 223333444445555556655


Q ss_pred             CCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHH---HhccCCchhHHHH----HHhCCHH--HHHHhcCCCCcchHh
Q 011328          190 KPQPLFEQTRPALPALERLIHSNDDEVLTDACWALS---YLSDGTNDKIQAV----IEAGVCP--RLVELLRHPSPSVLI  260 (488)
Q Consensus       190 ~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~---~l~~~~~~~~~~~----~~~~~l~--~L~~lL~~~~~~v~~  260 (488)
                      ..........++.+.+.-++.......+..++.+++   ++..+++.....+    .+.|+.+  .+..++++++.+.+.
T Consensus       171 ~~hq~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l  250 (678)
T KOG1293|consen  171 KDHQLILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERL  250 (678)
T ss_pred             chhhheeccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHH
Confidence            555555666788888877777778899999999999   7776666443322    2334444  455666777777777


Q ss_pred             HHHHHHhHhhcCCch------------h---------------------------------------hHHHhhCCChHHH
Q 011328          261 PALRTVGNIVTGDDM------------Q---------------------------------------TQCIINHQALPCL  289 (488)
Q Consensus       261 ~a~~~L~~l~~~~~~------------~---------------------------------------~~~~~~~~~~~~L  289 (488)
                      .++.++..+...+..            .                                       .....+....+..
T Consensus       251 ~sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~  330 (678)
T KOG1293|consen  251 RSLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTT  330 (678)
T ss_pred             HHHHHHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhH
Confidence            777777776654300            0                                       0000011111222


Q ss_pred             HHHhcc----------------------------------------------------cchhhHHHHHHHHHHHHhcCCH
Q 011328          290 LDLLTQ----------------------------------------------------NYKKSIKKEACWTISNITAGNV  317 (488)
Q Consensus       290 ~~lL~~----------------------------------------------------~~~~~v~~~a~~~L~nl~~~~~  317 (488)
                      .+++..                                                    . +...+..|+-++.++++.-.
T Consensus       331 ~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~k-d~~~~aaa~l~~~s~srsV~  409 (678)
T KOG1293|consen  331 TELLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIK-DHDFVAAALLCLKSFSRSVS  409 (678)
T ss_pred             HHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccc-cHHHHHHHHHHHHHHHHHHH
Confidence            222110                                                    1 23334444444444443211


Q ss_pred             HHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHH
Q 011328          318 NQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENI  397 (488)
Q Consensus       318 ~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l  397 (488)
                      ..+..+-...+..+|+.++..++..++..++.+|+|+.-.-+ .....+++.|+++.+..++.+.++.++..++|+|+++
T Consensus       410 aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs-~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l  488 (678)
T KOG1293|consen  410 ALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFS-NLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHL  488 (678)
T ss_pred             HHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcc-cHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence            111122245678999999999999999999999999986543 4567889999999999999999999999999999999


Q ss_pred             HHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCCC
Q 011328          398 LKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVEE  455 (488)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~  455 (488)
                      +-.++...           ...+-.-=+...|..+.++++..|++.+..+++++.-..
T Consensus       489 ~f~~de~~-----------k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~  535 (678)
T KOG1293|consen  489 MFNCDEEE-----------KFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNS  535 (678)
T ss_pred             HhcchHHH-----------HHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCc
Confidence            86655443           222222223577899999999999999999999998773

>PRK09687 putative lyase; Provisional

Probab=99.66  E-value=1.7e-14  Score=130.62  Aligned_cols=257  Identities=15%  Similarity=0.134  Sum_probs=202.9

Q ss_pred             cCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhH
Q 011328           72 SGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR  151 (488)
Q Consensus        72 ~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~  151 (488)
                      .--++.|.++|.+++ ..+|..|+++|..+-.           ..+++.+..+++++++.+|..++++|+.+-.....  
T Consensus        22 ~~~~~~L~~~L~d~d-~~vR~~A~~aL~~~~~-----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~--   87 (280)
T PRK09687         22 KLNDDELFRLLDDHN-SLKRISSIRVLQLRGG-----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC--   87 (280)
T ss_pred             hccHHHHHHHHhCCC-HHHHHHHHHHHHhcCc-----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc--
Confidence            346788899999999 8999999999988764           24578888899999999999999999998543211  


Q ss_pred             HHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCC
Q 011328          152 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGT  231 (488)
Q Consensus       152 ~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~  231 (488)
                          ....++.|..++.+++++.|+..++.+|++++......    ...+++.+...+.++++.|+..++++|+.+..  
T Consensus        88 ----~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~--  157 (280)
T PRK09687         88 ----QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFDKSTNVRFAVAFALSVIND--  157 (280)
T ss_pred             ----hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhCCCHHHHHHHHHHHhccCC--
Confidence                11245667767558889999999999999987543211    23456667788888999999999999986632  


Q ss_pred             chhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHH
Q 011328          232 NDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISN  311 (488)
Q Consensus       232 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~n  311 (488)
                               ...++.|+.++.++++.+|..|+.+|+.+...++         .+.+.|+..+.+. +..||..|+++|+.
T Consensus       158 ---------~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~---------~~~~~L~~~L~D~-~~~VR~~A~~aLg~  218 (280)
T PRK09687        158 ---------EAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP---------DIREAFVAMLQDK-NEEIRIEAIIGLAL  218 (280)
T ss_pred             ---------HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH---------HHHHHHHHHhcCC-ChHHHHHHHHHHHc
Confidence                     1457899999999999999999999999944333         3567799999988 99999999999998


Q ss_pred             HhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcC-CCCHHHHHHH
Q 011328          312 ITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLN-CPDPRIVTVC  390 (488)
Q Consensus       312 l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~v~~~a  390 (488)
                      +-.  +         ..++.|++.+.+++  ++..++.+|+.+-.   +         ..++.|.++++ ++|..++..+
T Consensus       219 ~~~--~---------~av~~Li~~L~~~~--~~~~a~~ALg~ig~---~---------~a~p~L~~l~~~~~d~~v~~~a  273 (280)
T PRK09687        219 RKD--K---------RVLSVLIKELKKGT--VGDLIIEAAGELGD---K---------TLLPVLDTLLYKFDDNEIITKA  273 (280)
T ss_pred             cCC--h---------hHHHHHHHHHcCCc--hHHHHHHHHHhcCC---H---------hHHHHHHHHHhhCCChhHHHHH
Confidence            632  3         37899999999865  67889999999953   2         25788888886 7899999998


Q ss_pred             HHHHHH
Q 011328          391 LEGLEN  396 (488)
Q Consensus       391 l~~L~~  396 (488)
                      .+++..
T Consensus       274 ~~a~~~  279 (280)
T PRK09687        274 IDKLKR  279 (280)
T ss_pred             HHHHhc
Confidence            888753

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.66  E-value=3.1e-13  Score=136.43  Aligned_cols=359  Identities=17%  Similarity=0.228  Sum_probs=258.4

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhccCC--CccHHHHHHcCCHHHHHH----hhcCCCChhHHHHHHHHHHHhcCCC
Q 011328           32 LPAMVAGVWSDDRNIQLDATTQFRKLLSIER--SPPINEVIQSGVVPRFIE----FLSRDDFPQLQFEAAWALTNIASGT  105 (488)
Q Consensus        32 i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~--~~~~~~~~~~~~i~~L~~----lL~~~~~~~v~~~a~~~L~~l~~~~  105 (488)
                      .+.+.+++.+.+..++..|++++..++....  ....+.+.  ..+|.++.    .++.++ .+....++.+|..++...
T Consensus       161 ~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~--~llP~~l~vl~~~i~~~d-~~~a~~~l~~l~El~e~~  237 (1075)
T KOG2171|consen  161 LRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFR--DLLPSLLNVLQEVIQDGD-DDAAKSALEALIELLESE  237 (1075)
T ss_pred             HHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHH--HHhHHHHHHhHhhhhccc-hHHHHHHHHHHHHHHhhc
Confidence            3456677777666699999999998876542  22233333  34555554    445566 677788999999999866


Q ss_pred             chhhHHHHhCCCHHHHHHhhCC--CCHHHHHHHHHHHhhhhCCCchhHHHHHh--cCChHHHHHHhcc---c--------
Q 011328          106 SENTRVVIDHGAVPIFVRLLSS--PTDDVREQAVWALGNVAGDSPKCRDLVLS--NGALMPLLAQFNE---H--------  170 (488)
Q Consensus       106 ~~~~~~~~~~g~i~~L~~~L~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~~--~~~l~~L~~ll~~---~--------  170 (488)
                      +..-...+. .++..-+....+  -++.+|..|+.+|..+++.-|...+....  ...++.++..+-.   +        
T Consensus       238 pk~l~~~l~-~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~  316 (1075)
T KOG2171|consen  238 PKLLRPHLS-QIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDD  316 (1075)
T ss_pred             hHHHHHHHH-HHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccc
Confidence            666554443 356666666665  47899999999999998875443232222  1224444444411   0        


Q ss_pred             ---cc-HhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHH
Q 011328          171 ---AK-LSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPR  246 (488)
Q Consensus       171 ---~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~  246 (488)
                         ++ ..-...|..+|-.++.+-+.  ......+++.+-.++.++++.-|..++.+|+.++++..+.+...+. .+++.
T Consensus       317 ~ded~~~~~~~~A~~~lDrlA~~L~g--~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~-~Il~~  393 (1075)
T KOG2171|consen  317 LDEDDEETPYRAAEQALDRLALHLGG--KQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLP-KILPI  393 (1075)
T ss_pred             cccccccCcHHHHHHHHHHHHhcCCh--hhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHH-HHHHH
Confidence               01 22456677777777766422  2334567788888899999999999999999999998877665554 78888


Q ss_pred             HHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcC-CHHHHHHHHH
Q 011328          247 LVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG-NVNQIQAIIE  325 (488)
Q Consensus       247 L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~  325 (488)
                      ++..|.++.|.||..|+.+++.++..-....+.-....+++.|+..+.+..+++++..|+.++.|++.. ..+.+...++
T Consensus       394 Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd  473 (1075)
T KOG2171|consen  394 VLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLD  473 (1075)
T ss_pred             HHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence            999999999999999999999999987777777777788899999999988899999999999999984 3444444444


Q ss_pred             cCChH-HHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCC----HHHHHHHHHHHHHHHHh
Q 011328          326 AGIIG-PLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPD----PRIVTVCLEGLENILKA  400 (488)
Q Consensus       326 ~~~l~-~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~----~~v~~~al~~L~~l~~~  400 (488)
                       +++. .+..+++++.+.+++.+..+|+..+........+++-.  .++.|.+.+...+    ..++-..+++++-+-..
T Consensus       474 -~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~--~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~A  550 (1075)
T KOG2171|consen  474 -GLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDR--LMPLLKNFLQNADDKDLRELRGKTMECLSLIARA  550 (1075)
T ss_pred             -HHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHH--HHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHH
Confidence             4666 55556667789999999999999998777777777655  7888888887654    34566666676655443

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=99.66  E-value=9.7e-15  Score=148.40  Aligned_cols=325  Identities=19%  Similarity=0.199  Sum_probs=249.2

Q ss_pred             ccHHHHHHHhcC---CCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHH---Hh-------hcCC------CChhH
Q 011328           30 ESLPAMVAGVWS---DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFI---EF-------LSRD------DFPQL   90 (488)
Q Consensus        30 ~~i~~l~~~L~s---~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~---~l-------L~~~------~~~~v   90 (488)
                      |.+|.|++.|.-   ++.+.+..|-.+|.+++... .+....-.+..++..|-   ..       ++..      ...+-
T Consensus       235 gCLpLLvQilH~~d~~~kear~~A~aALHNIVhSq-PD~kr~RRE~kvL~lLeQIraYC~~~~~~lqar~~~~apa~~~H  313 (2195)
T KOG2122|consen  235 GCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQ-PDEKRGRREKKVLHLLEQIRAYCETCWTWLQARGPAIAPASDEH  313 (2195)
T ss_pred             cchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcC-cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccch
Confidence            899999999973   35688999999999998776 33322222222333332   11       2211      11234


Q ss_pred             HH-HHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCC------------CCHHHHHHHHHHHhhhhCCCchhHH-HHHh
Q 011328           91 QF-EAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS------------PTDDVREQAVWALGNVAGDSPKCRD-LVLS  156 (488)
Q Consensus        91 ~~-~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~------------~~~~v~~~a~~~L~~l~~~~~~~~~-~~~~  156 (488)
                      +. .|+.+|..++. +++.|..+.+.|+++.+-.++.-            ....+|..+..+|.||..++...+. .+..
T Consensus       314 ~lcaA~~~lMK~SF-DEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~  392 (2195)
T KOG2122|consen  314 QLCAALCTLMKLSF-DEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQ  392 (2195)
T ss_pred             hhHHHHHHHHHhhc-cHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhh
Confidence            44 56677778887 89999999999999999887742            2357899999999999977755544 4556


Q ss_pred             cCChHHHHHHhcccccHhHHHHHHHHHHHhhcCC--CCCChhhhhchHHHHHHh-hccCChhHHHHHHHHHHHhccCCch
Q 011328          157 NGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK--PQPLFEQTRPALPALERL-IHSNDDEVLTDACWALSYLSDGTND  233 (488)
Q Consensus       157 ~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~--~~~~~~~~~~~~~~l~~l-l~~~~~~v~~~al~~L~~l~~~~~~  233 (488)
                      .|++..++..| .+..+++......+|.||+-..  ..+..+...|-+-.|+.. ++.........++.+|+||+.+..+
T Consensus       393 rgfMeavVAQL-~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcte  471 (2195)
T KOG2122|consen  393 RGFMEAVVAQL-ISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTE  471 (2195)
T ss_pred             hhHHHHHHHHH-hcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccc
Confidence            68899999999 5566678888889999998654  333444445555555544 5566778899999999999988776


Q ss_pred             hHHHHHHh-CCHHHHHHhcCCC----CcchHhHHHHHHhHhhc---CCchhhHHHhhCCChHHHHHHhcccchhhHHHHH
Q 011328          234 KIQAVIEA-GVCPRLVELLRHP----SPSVLIPALRTVGNIVT---GDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEA  305 (488)
Q Consensus       234 ~~~~~~~~-~~l~~L~~lL~~~----~~~v~~~a~~~L~~l~~---~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a  305 (488)
                      +...++.. |.+..|+.+|...    .-.+.+.+-.+|.|++.   .++..++.+.+++.+..|+..|++. +..+...+
T Consensus       472 NKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~-SLTiVSNa  550 (2195)
T KOG2122|consen  472 NKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSH-SLTIVSNA  550 (2195)
T ss_pred             cchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhc-ceEEeecc
Confidence            66666654 8899999999775    34577777777777664   3566777888999999999999999 89999999


Q ss_pred             HHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCC
Q 011328          306 CWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG  358 (488)
Q Consensus       306 ~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~  358 (488)
                      |.+|+||+..+++..+.+++.|.++.|..++++++..+..-++.+|.|+....
T Consensus       551 CGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~R  603 (2195)
T KOG2122|consen  551 CGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFR  603 (2195)
T ss_pred             hhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCC
Confidence            99999999999999999999999999999999999999999999999998654

>PRK09687 putative lyase; Provisional

Probab=99.66  E-value=4.3e-14  Score=127.95  Aligned_cols=255  Identities=15%  Similarity=0.120  Sum_probs=200.5

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh
Q 011328           30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT  109 (488)
Q Consensus        30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~  109 (488)
                      -.++.|.+.|.+++..++..+++.|..+-.            ..+++.+..++++++ +.+|..|+++|+.+-... .. 
T Consensus        23 ~~~~~L~~~L~d~d~~vR~~A~~aL~~~~~------------~~~~~~l~~ll~~~d-~~vR~~A~~aLg~lg~~~-~~-   87 (280)
T PRK09687         23 LNDDELFRLLDDHNSLKRISSIRVLQLRGG------------QDVFRLAIELCSSKN-PIERDIGADILSQLGMAK-RC-   87 (280)
T ss_pred             ccHHHHHHHHhCCCHHHHHHHHHHHHhcCc------------chHHHHHHHHHhCCC-HHHHHHHHHHHHhcCCCc-cc-
Confidence            567889999999999999999999988532            236778888899998 999999999999986521 11 


Q ss_pred             HHHHhCCCHHHHHHh-hCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhc
Q 011328          110 RVVIDHGAVPIFVRL-LSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR  188 (488)
Q Consensus       110 ~~~~~~g~i~~L~~~-L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~  188 (488)
                          ....++.|..+ ++++++.+|..++.+|++++........     ..+..+...+ .+.+..|+..++++|..+..
T Consensus        88 ----~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~~~-----~a~~~l~~~~-~D~~~~VR~~a~~aLg~~~~  157 (280)
T PRK09687         88 ----QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLYSP-----KIVEQSQITA-FDKSTNVRFAVAFALSVIND  157 (280)
T ss_pred             ----hHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccccccch-----HHHHHHHHHh-hCCCHHHHHHHHHHHhccCC
Confidence                11346777776 6778999999999999999654321111     1344455555 66788999999999976543


Q ss_pred             CCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhH
Q 011328          189 GKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN  268 (488)
Q Consensus       189 ~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~  268 (488)
                                ...++.|+.++.++++.|+..++.+|+.+....+         ..++.|+..+.+.++.||..|.+.|+.
T Consensus       158 ----------~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~---------~~~~~L~~~L~D~~~~VR~~A~~aLg~  218 (280)
T PRK09687        158 ----------EAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP---------DIREAFVAMLQDKNEEIRIEAIIGLAL  218 (280)
T ss_pred             ----------HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH---------HHHHHHHHHhcCCChHHHHHHHHHHHc
Confidence                      3588999999999999999999999999843332         445778999999999999999999988


Q ss_pred             hhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh-cCChhHHHHH
Q 011328          269 IVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLL-NAEFEIKKEA  347 (488)
Q Consensus       269 l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~-~~~~~v~~~a  347 (488)
                      +-.  +         .+++.|++.++++ +  ++..++.+|+++..  +.         .+|.|..++. .+|..++..|
T Consensus       219 ~~~--~---------~av~~Li~~L~~~-~--~~~~a~~ALg~ig~--~~---------a~p~L~~l~~~~~d~~v~~~a  273 (280)
T PRK09687        219 RKD--K---------RVLSVLIKELKKG-T--VGDLIIEAAGELGD--KT---------LLPVLDTLLYKFDDNEIITKA  273 (280)
T ss_pred             cCC--h---------hHHHHHHHHHcCC-c--hHHHHHHHHHhcCC--Hh---------HHHHHHHHHhhCCChhHHHHH
Confidence            632  2         5688999999887 4  67889999998853  32         7889999997 6799999999


Q ss_pred             HHHHHH
Q 011328          348 AWAISN  353 (488)
Q Consensus       348 ~~aL~~  353 (488)
                      .++|..
T Consensus       274 ~~a~~~  279 (280)
T PRK09687        274 IDKLKR  279 (280)
T ss_pred             HHHHhc
Confidence            998854

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=99.63  E-value=2.5e-13  Score=143.64  Aligned_cols=275  Identities=16%  Similarity=0.188  Sum_probs=220.4

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh
Q 011328           30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT  109 (488)
Q Consensus        30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~  109 (488)
                      ..++.|++.|.++++.+|..|+..|..+..            .+.++.|+.+|++++ +.+|..|+.+|..+....+   
T Consensus       621 ~~~~~L~~~L~D~d~~VR~~Av~~L~~~~~------------~~~~~~L~~aL~D~d-~~VR~~Aa~aL~~l~~~~~---  684 (897)
T PRK13800        621 PSVAELAPYLADPDPGVRRTAVAVLTETTP------------PGFGPALVAALGDGA-AAVRRAAAEGLRELVEVLP---  684 (897)
T ss_pred             hhHHHHHHHhcCCCHHHHHHHHHHHhhhcc------------hhHHHHHHHHHcCCC-HHHHHHHHHHHHHHHhccC---
Confidence            567889999999999999999999998642            246889999999998 8999999999988854111   


Q ss_pred             HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcC
Q 011328          110 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG  189 (488)
Q Consensus       110 ~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~  189 (488)
                             ..+.|...|.++++.+|..++.+|..+....            ...++..| .+.++.++..|+.+|..+-. 
T Consensus       685 -------~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~------------~~~l~~~L-~D~d~~VR~~Av~aL~~~~~-  743 (897)
T PRK13800        685 -------PAPALRDHLGSPDPVVRAAALDVLRALRAGD------------AALFAAAL-GDPDHRVRIEAVRALVSVDD-  743 (897)
T ss_pred             -------chHHHHHHhcCCCHHHHHHHHHHHHhhccCC------------HHHHHHHh-cCCCHHHHHHHHHHHhcccC-
Confidence                   2357778888999999999999999874221            23466677 78899999999999997521 


Q ss_pred             CCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHh
Q 011328          190 KPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNI  269 (488)
Q Consensus       190 ~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l  269 (488)
                                  .+.+..++.++++.|+..++.+|..+.....         ..++.|..++.++++.+|..|+.+|+.+
T Consensus       744 ------------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~---------~~~~~L~~ll~D~d~~VR~aA~~aLg~~  802 (897)
T PRK13800        744 ------------VESVAGAATDENREVRIAVAKGLATLGAGGA---------PAGDAVRALTGDPDPLVRAAALAALAEL  802 (897)
T ss_pred             ------------cHHHHHHhcCCCHHHHHHHHHHHHHhccccc---------hhHHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence                        2446788999999999999999998865432         2367788999999999999999999998


Q ss_pred             hcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHH
Q 011328          270 VTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAW  349 (488)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~  349 (488)
                      ... +         .....+...|.++ ++.||..|+.+|+.+..  +         ..++.|+.++.+++..||..|++
T Consensus       803 g~~-~---------~~~~~l~~aL~d~-d~~VR~~Aa~aL~~l~~--~---------~a~~~L~~~L~D~~~~VR~~A~~  860 (897)
T PRK13800        803 GCP-P---------DDVAAATAALRAS-AWQVRQGAARALAGAAA--D---------VAVPALVEALTDPHLDVRKAAVL  860 (897)
T ss_pred             CCc-c---------hhHHHHHHHhcCC-ChHHHHHHHHHHHhccc--c---------chHHHHHHHhcCCCHHHHHHHHH
Confidence            542 1         1235688889888 89999999999998743  2         25688999999999999999999


Q ss_pred             HHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHH
Q 011328          350 AISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLE  395 (488)
Q Consensus       350 aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~  395 (488)
                      +|+.+.  .++.         ..+.|...+++++..|+..+..+|.
T Consensus       861 aL~~~~--~~~~---------a~~~L~~al~D~d~~Vr~~A~~aL~  895 (897)
T PRK13800        861 ALTRWP--GDPA---------ARDALTTALTDSDADVRAYARRALA  895 (897)
T ss_pred             HHhccC--CCHH---------HHHHHHHHHhCCCHHHHHHHHHHHh
Confidence            999972  2222         3666778999999999999998886

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=99.59  E-value=4.1e-13  Score=118.64  Aligned_cols=238  Identities=19%  Similarity=0.217  Sum_probs=183.4

Q ss_pred             hhhchHHHHHHhhcc-CChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCch
Q 011328          197 QTRPALPALERLIHS-NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDM  275 (488)
Q Consensus       197 ~~~~~~~~l~~ll~~-~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~  275 (488)
                      ...+-++.++.+|+. .|+.+++.++.++++.+..+ .....+.+.|+++.+..++.++++.++..|++++.|++...+.
T Consensus         9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~-~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en   87 (254)
T PF04826_consen    9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAAFP-FNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDEN   87 (254)
T ss_pred             cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCh-hHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhh
Confidence            446778899999985 58999999999999987665 4447788889999999999999999999999999999885443


Q ss_pred             hhHHHhhCCChHHHHH-HhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHh
Q 011328          276 QTQCIINHQALPCLLD-LLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNA  354 (488)
Q Consensus       276 ~~~~~~~~~~~~~L~~-lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l  354 (488)
                      . .. ++. .++.+.+ ....+.+..++..++.+|.|++..+. . ..++. +.++.+++++..++..+|..++.+|.|+
T Consensus        88 ~-~~-Ik~-~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~-~-~~~l~-~~i~~ll~LL~~G~~~~k~~vLk~L~nL  161 (254)
T PF04826_consen   88 Q-EQ-IKM-YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTND-Y-HHMLA-NYIPDLLSLLSSGSEKTKVQVLKVLVNL  161 (254)
T ss_pred             H-HH-HHH-HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcc-h-hhhHH-hhHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence            3 22 333 3445555 44444478899999999999987522 2 23332 3799999999999999999999999999


Q ss_pred             ccCCCHHHHHHHHHCCChHHHHhhcCCC-CHHHHHHHHHHHHHHHHhhhhhhc---cCCCCccchHHHHHHhhc-cHHHH
Q 011328          355 TSGGSNEQIKFLVSQGCIKPLCDLLNCP-DPRIVTVCLEGLENILKAGEAEKN---MGNTGGVNLFAQAIDDAE-GLEKI  429 (488)
Q Consensus       355 ~~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~al~~L~~l~~~~~~~~~---~~~~~~~~~~~~~l~~~g-~~~~L  429 (488)
                      +.+  +...+.++..+++..++.+++.+ +.++...++..+.|+-..-.+...   ...+. .+.....|.+.+ .-++|
T Consensus       162 S~n--p~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~~~~~~~-~~~L~~~~~e~~~~~~~l  238 (254)
T PF04826_consen  162 SEN--PDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYVFVQDDFS-EDSLFSLFGESSQLAKKL  238 (254)
T ss_pred             ccC--HHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcccceeccccCC-chhHHHHHccHHHHHHHH
Confidence            974  58889999999999999999975 578888999999998543322211   11111 223446777666 78899


Q ss_pred             HHhhcCCCHHHHHHH
Q 011328          430 ENLQSHDNTEIYEKA  444 (488)
Q Consensus       430 ~~l~~~~~~~v~~~a  444 (488)
                      ..+..|++++|+.++
T Consensus       239 ~~l~~h~d~ev~~~v  253 (254)
T PF04826_consen  239 QALANHPDPEVKEQV  253 (254)
T ss_pred             HHHHcCCCHHHhhhc
Confidence            999999999999764

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=99.57  E-value=1.9e-12  Score=137.11  Aligned_cols=277  Identities=16%  Similarity=0.200  Sum_probs=218.9

Q ss_pred             cCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhH
Q 011328           72 SGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR  151 (488)
Q Consensus        72 ~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~  151 (488)
                      ...++.|+..|++++ +.+|..|+..|+.+..           .+.++.|...|+++++.+|..|+.+|..+....+   
T Consensus       620 ~~~~~~L~~~L~D~d-~~VR~~Av~~L~~~~~-----------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~---  684 (897)
T PRK13800        620 APSVAELAPYLADPD-PGVRRTAVAVLTETTP-----------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLP---  684 (897)
T ss_pred             chhHHHHHHHhcCCC-HHHHHHHHHHHhhhcc-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccC---
Confidence            346788999999999 9999999999998753           2468899999999999999999999988853222   


Q ss_pred             HHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCC
Q 011328          152 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGT  231 (488)
Q Consensus       152 ~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~  231 (488)
                             ..+.+...| ++.++.++..++.+|..+....           ...++..+.++++.++..++.+|..+-.  
T Consensus       685 -------~~~~L~~~L-~~~d~~VR~~A~~aL~~~~~~~-----------~~~l~~~L~D~d~~VR~~Av~aL~~~~~--  743 (897)
T PRK13800        685 -------PAPALRDHL-GSPDPVVRAAALDVLRALRAGD-----------AALFAAALGDPDHRVRIEAVRALVSVDD--  743 (897)
T ss_pred             -------chHHHHHHh-cCCCHHHHHHHHHHHHhhccCC-----------HHHHHHHhcCCCHHHHHHHHHHHhcccC--
Confidence                   124566777 6789999999999998865321           2457788999999999999999997521  


Q ss_pred             chhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHH
Q 011328          232 NDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISN  311 (488)
Q Consensus       232 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~n  311 (488)
                                  .+.|...+.++++.+|..++.+|+.+.....         ..++.|..+++++ ++.+|..|+.+|++
T Consensus       744 ------------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~---------~~~~~L~~ll~D~-d~~VR~aA~~aLg~  801 (897)
T PRK13800        744 ------------VESVAGAATDENREVRIAVAKGLATLGAGGA---------PAGDAVRALTGDP-DPLVRAAALAALAE  801 (897)
T ss_pred             ------------cHHHHHHhcCCCHHHHHHHHHHHHHhccccc---------hhHHHHHHHhcCC-CHHHHHHHHHHHHh
Confidence                        2346678999999999999999998865322         2367788999998 89999999999998


Q ss_pred             HhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHH
Q 011328          312 ITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCL  391 (488)
Q Consensus       312 l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al  391 (488)
                      +... +.         ..+.+...+.++++.||..|+.+|..+...            ..++.|..+++++++.||..++
T Consensus       802 ~g~~-~~---------~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~------------~a~~~L~~~L~D~~~~VR~~A~  859 (897)
T PRK13800        802 LGCP-PD---------DVAAATAALRASAWQVRQGAARALAGAAAD------------VAVPALVEALTDPHLDVRKAAV  859 (897)
T ss_pred             cCCc-ch---------hHHHHHHHhcCCChHHHHHHHHHHHhcccc------------chHHHHHHHhcCCCHHHHHHHH
Confidence            8543 11         335578889999999999999999987421            2468899999999999999999


Q ss_pred             HHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHH
Q 011328          392 EGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILET  450 (488)
Q Consensus       392 ~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~~~~~v~~~a~~~l~~  450 (488)
                      .+|..+  ..+.                    ...+.|...+++++.+|+..|...|+.
T Consensus       860 ~aL~~~--~~~~--------------------~a~~~L~~al~D~d~~Vr~~A~~aL~~  896 (897)
T PRK13800        860 LALTRW--PGDP--------------------AARDALTTALTDSDADVRAYARRALAH  896 (897)
T ss_pred             HHHhcc--CCCH--------------------HHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence            999885  1110                    114557788889999999999998864

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.54  E-value=7.7e-13  Score=133.87  Aligned_cols=361  Identities=17%  Similarity=0.214  Sum_probs=254.2

Q ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhH
Q 011328           31 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR  110 (488)
Q Consensus        31 ~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~  110 (488)
                      .++.+.+.|.++++.++-.|++++.++...   +..     ..+++.+.+++.+++ +.+|..|+.++..+...+|+...
T Consensus        80 ~~n~l~kdl~~~n~~~~~lAL~~l~~i~~~---~~~-----~~l~~~v~~ll~~~~-~~VRk~A~~~l~~i~~~~p~~~~  150 (526)
T PF01602_consen   80 IINSLQKDLNSPNPYIRGLALRTLSNIRTP---EMA-----EPLIPDVIKLLSDPS-PYVRKKAALALLKIYRKDPDLVE  150 (526)
T ss_dssp             HHHHHHHHHCSSSHHHHHHHHHHHHHH-SH---HHH-----HHHHHHHHHHHHSSS-HHHHHHHHHHHHHHHHHCHCCHH
T ss_pred             HHHHHHHhhcCCCHHHHHHHHhhhhhhccc---chh-----hHHHHHHHHHhcCCc-hHHHHHHHHHHHHHhccCHHHHH
Confidence            567788889999999999999999997632   222     236788899999999 99999999999999886555432


Q ss_pred             HHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhc---ccccHhHHHHHHHHHHHhh
Q 011328          111 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN---EHAKLSMLRNATWTLSNFC  187 (488)
Q Consensus       111 ~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~---~~~~~~v~~~a~~~L~~l~  187 (488)
                         .. .++.+.+++.+.++.++..|+.++..+ ..++....     ..++.++..+.   ...++-.+..++..+..++
T Consensus       151 ---~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~-----~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~  220 (526)
T PF01602_consen  151 ---DE-LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYK-----SLIPKLIRILCQLLSDPDPWLQIKILRLLRRYA  220 (526)
T ss_dssp             ---GG-HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHT-----THHHHHHHHHHHHHTCCSHHHHHHHHHHHTTST
T ss_pred             ---HH-HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhh-----hhHHHHHHHhhhcccccchHHHHHHHHHHHhcc
Confidence               12 589999999889999999999999999 22221100     23444444432   5678888888888888776


Q ss_pred             cCCCCCChhhh--hchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHH
Q 011328          188 RGKPQPLFEQT--RPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT  265 (488)
Q Consensus       188 ~~~~~~~~~~~--~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~  265 (488)
                      ...+    ...  ..+++.+..++++.++.|...++.++..+.....      .-..+++.+..++.++++.++..++..
T Consensus       221 ~~~~----~~~~~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~------~~~~~~~~L~~lL~s~~~nvr~~~L~~  290 (526)
T PF01602_consen  221 PMEP----EDADKNRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE------LLQKAINPLIKLLSSSDPNVRYIALDS  290 (526)
T ss_dssp             SSSH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH------HHHHHHHHHHHHHTSSSHHHHHHHHHH
T ss_pred             cCCh----hhhhHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH------HHHhhHHHHHHHhhcccchhehhHHHH
Confidence            5431    222  5688888899998899999999999998876543      223677889999999899999999999


Q ss_pred             HhHhhcCCchhhHHHhhCCChHHHHHHhc-ccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh-cCChhH
Q 011328          266 VGNIVTGDDMQTQCIINHQALPCLLDLLT-QNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLL-NAEFEI  343 (488)
Q Consensus       266 L~~l~~~~~~~~~~~~~~~~~~~L~~lL~-~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~-~~~~~v  343 (488)
                      |..++...+..   + .  .....+..+. ++ +..+|..++.++..++.  +.+...     +++.|...+. .++.++
T Consensus       291 L~~l~~~~~~~---v-~--~~~~~~~~l~~~~-d~~Ir~~~l~lL~~l~~--~~n~~~-----Il~eL~~~l~~~~d~~~  356 (526)
T PF01602_consen  291 LSQLAQSNPPA---V-F--NQSLILFFLLYDD-DPSIRKKALDLLYKLAN--ESNVKE-----ILDELLKYLSELSDPDF  356 (526)
T ss_dssp             HHHHCCHCHHH---H-G--THHHHHHHHHCSS-SHHHHHHHHHHHHHH----HHHHHH-----HHHHHHHHHHHC--HHH
T ss_pred             HHHhhcccchh---h-h--hhhhhhheecCCC-ChhHHHHHHHHHhhccc--ccchhh-----HHHHHHHHHHhccchhh
Confidence            99999865222   2 2  2233344555 55 88999999999999975  343333     5667888884 448889


Q ss_pred             HHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhh
Q 011328          344 KKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDA  423 (488)
Q Consensus       344 ~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~  423 (488)
                      +..++.+++.++....+.. .     -.++.+.+++...+..+...+...+.+++...+..+           ...    
T Consensus       357 ~~~~i~~I~~la~~~~~~~-~-----~~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~~~~~-----------~~~----  415 (526)
T PF01602_consen  357 RRELIKAIGDLAEKFPPDA-E-----WYVDTLLKLLEISGDYVSNEIINVIRDLLSNNPELR-----------EKI----  415 (526)
T ss_dssp             HHHHHHHHHHHHHHHGSSH-H-----HHHHHHHHHHHCTGGGCHCHHHHHHHHHHHHSTTTH-----------HHH----
T ss_pred             hhhHHHHHHHHHhccCchH-H-----HHHHHHHHhhhhccccccchHHHHHHHHhhcChhhh-----------HHH----
Confidence            9999999999985332111 1     146778888887777777777777777776544321           111    


Q ss_pred             ccHHHHHHhh-cCCCHHHHHHHHHHHHHhcCCCCC
Q 011328          424 EGLEKIENLQ-SHDNTEIYEKAVKILETYWVEEDE  457 (488)
Q Consensus       424 g~~~~L~~l~-~~~~~~v~~~a~~~l~~~~~~~~~  457 (488)
                        ++.+.++. +-.++++...+.+++..|-+..++
T Consensus       416 --l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~~  448 (526)
T PF01602_consen  416 --LKKLIELLEDISSPEALAAAIWILGEYGELIEN  448 (526)
T ss_dssp             --HHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHTT
T ss_pred             --HHHHHHHHHHhhHHHHHHHHHhhhcccCCcccc
Confidence              33334443 356778888888888887766444

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.51  E-value=6.9e-13  Score=125.82  Aligned_cols=319  Identities=18%  Similarity=0.237  Sum_probs=217.5

Q ss_pred             CCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcC----ChHHHHHHhcccccHhHHHHHHHHHHHhhcCCC
Q 011328          116 GAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNG----ALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP  191 (488)
Q Consensus       116 g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~----~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~  191 (488)
                      .++|.|..+|.+++....+.|..+|..+|++++..-+.-....    .++.++++. +++++.+|..|+.++..+.....
T Consensus       128 elLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~-~h~spkiRs~A~~cvNq~i~~~~  206 (885)
T KOG2023|consen  128 ELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFF-KHPSPKIRSHAVGCVNQFIIIQT  206 (885)
T ss_pred             hHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHH-hCCChhHHHHHHhhhhheeecCc
Confidence            3689999999999999999999999999999875433321122    356666777 78899999999999988877655


Q ss_pred             CCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhc
Q 011328          192 QPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVT  271 (488)
Q Consensus       192 ~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~  271 (488)
                      ..-......++..+..+-.+++++||...|.++..+.+..+++...-.. ++++.++...++.+++|...|+.....++.
T Consensus       207 qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~-~IveyML~~tqd~dE~VALEACEFwla~ae  285 (885)
T KOG2023|consen  207 QALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLD-NIVEYMLQRTQDVDENVALEACEFWLALAE  285 (885)
T ss_pred             HHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchH-HHHHHHHHHccCcchhHHHHHHHHHHHHhc
Confidence            5555566788888888888899999999999999999776655443333 677888888888899999999999999987


Q ss_pred             CCchhhHHHhh---CCChHHHHHHhcccc----------h--------hhHHH---------------------------
Q 011328          272 GDDMQTQCIIN---HQALPCLLDLLTQNY----------K--------KSIKK---------------------------  303 (488)
Q Consensus       272 ~~~~~~~~~~~---~~~~~~L~~lL~~~~----------~--------~~v~~---------------------------  303 (488)
                      ..  ..+.++.   ..++|.|+.-+..++          +        .++|-                           
T Consensus       286 qp--i~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDd  363 (885)
T KOG2023|consen  286 QP--ICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDD  363 (885)
T ss_pred             Cc--CcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccccccc
Confidence            43  2222221   134555544332110          0        00000                           


Q ss_pred             --HHHHHHHHHhcCCHHHHHHHHHcCC----hHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHh
Q 011328          304 --EACWTISNITAGNVNQIQAIIEAGI----IGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCD  377 (488)
Q Consensus       304 --~a~~~L~nl~~~~~~~~~~l~~~~~----l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~  377 (488)
                        ..-|-|..++...-+....++...+    +|.|-+.|.+.++.+|+.+.-||+.++.++-....+.+-+  +++.|+.
T Consensus       364 D~~~dWNLRkCSAAaLDVLanvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~Lpe--Lip~l~~  441 (885)
T KOG2023|consen  364 DAFSDWNLRKCSAAALDVLANVFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPE--LIPFLLS  441 (885)
T ss_pred             cccccccHhhccHHHHHHHHHhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHH--HHHHHHH
Confidence              0012232222222222222333334    4555555566789999999999999998876555666544  7999999


Q ss_pred             hcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 011328          378 LLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYW  452 (488)
Q Consensus       378 ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~~~~~v~~~a~~~l~~~~  452 (488)
                      +|++..+-+|...+|.|++....--..+...      -|...+      +.|.+-.-+.|.+|+++|......+-
T Consensus       442 ~L~DKkplVRsITCWTLsRys~wv~~~~~~~------~f~pvL------~~ll~~llD~NK~VQEAAcsAfAtle  504 (885)
T KOG2023|consen  442 LLDDKKPLVRSITCWTLSRYSKWVVQDSRDE------YFKPVL------EGLLRRLLDSNKKVQEAACSAFATLE  504 (885)
T ss_pred             HhccCccceeeeeeeeHhhhhhhHhcCChHh------hhHHHH------HHHHHHHhcccHHHHHHHHHHHHHHH
Confidence            9999999999999999998876544332110      023333      33344445668999999988777663

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=99.51  E-value=1.1e-12  Score=116.09  Aligned_cols=196  Identities=19%  Similarity=0.238  Sum_probs=162.6

Q ss_pred             HHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCch
Q 011328           70 IQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK  149 (488)
Q Consensus        70 ~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~  149 (488)
                      .+.+-++.|+.+|+..++|.+++.++.++++.+. .+.+++.+.+.|+++.+..++.++++.++..|++++.|++...+.
T Consensus         9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aa-f~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en   87 (254)
T PF04826_consen    9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAA-FPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDEN   87 (254)
T ss_pred             cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhcc-ChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhh
Confidence            4556789999999976559999999999999987 889999999999999999999999999999999999999877654


Q ss_pred             hHHHHHhcCChHHHHHHhcc-cccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhc
Q 011328          150 CRDLVLSNGALMPLLAQFNE-HAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLS  228 (488)
Q Consensus       150 ~~~~~~~~~~l~~L~~ll~~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~  228 (488)
                       +..+..  .+..+++.... .-+..++..++.+|.+|+.......  ...+.++.++.++.+++..++..++++|.|++
T Consensus        88 -~~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~--~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS  162 (254)
T PF04826_consen   88 -QEQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHH--MLANYIPDLLSLLSSGSEKTKVQVLKVLVNLS  162 (254)
T ss_pred             -HHHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhh--hHHhhHHHHHHHHHcCChHHHHHHHHHHHHhc
Confidence             344332  46666665433 3477899999999999987653322  23568999999999999999999999999999


Q ss_pred             cCCchhHHHHHHhCCHHHHHHhcCCC-CcchHhHHHHHHhHhhcC
Q 011328          229 DGTNDKIQAVIEAGVCPRLVELLRHP-SPSVLIPALRTVGNIVTG  272 (488)
Q Consensus       229 ~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~v~~~a~~~L~~l~~~  272 (488)
                      .++. ..+.++..+++..++.++... ..++...++..+.|+..+
T Consensus       163 ~np~-~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~  206 (254)
T PF04826_consen  163 ENPD-MTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINEN  206 (254)
T ss_pred             cCHH-HHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence            8875 446688889999999999875 677889999999999764

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.49  E-value=7.9e-11  Score=119.25  Aligned_cols=359  Identities=18%  Similarity=0.212  Sum_probs=253.4

Q ss_pred             HHHHHhcCC--CHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHH
Q 011328           34 AMVAGVWSD--DRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRV  111 (488)
Q Consensus        34 ~l~~~L~s~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~  111 (488)
                      .+.+.+.+.  +...+..++.-+..+.... .+.      ..+.+.+++++.+.+ ...+.-+-..+..+...+++....
T Consensus         8 el~~~~~~~~~~~~~~~~~l~kli~~~~~G-~~~------~~~~~~vi~l~~s~~-~~~Krl~yl~l~~~~~~~~~~~~l   79 (526)
T PF01602_consen    8 ELAKILNSFKIDISKKKEALKKLIYLMMLG-YDI------SFLFMEVIKLISSKD-LELKRLGYLYLSLYLHEDPELLIL   79 (526)
T ss_dssp             HHHHHHHCSSTHHHHHHHHHHHHHHHHHTT----------GSTHHHHHCTCSSSS-HHHHHHHHHHHHHHTTTSHHHHHH
T ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHHHcC-CCC------chHHHHHHHHhCCCC-HHHHHHHHHHHHHHhhcchhHHHH
Confidence            455556555  7777777777777765443 221      257888899999888 899999999999999866663222


Q ss_pred             HHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCC
Q 011328          112 VIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP  191 (488)
Q Consensus       112 ~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~  191 (488)
                           ++..+.+=+.++++.+|..|++++++++  .++..+.     .++.+.+++ .++++.+|+.|+.++..+....+
T Consensus        80 -----~~n~l~kdl~~~n~~~~~lAL~~l~~i~--~~~~~~~-----l~~~v~~ll-~~~~~~VRk~A~~~l~~i~~~~p  146 (526)
T PF01602_consen   80 -----IINSLQKDLNSPNPYIRGLALRTLSNIR--TPEMAEP-----LIPDVIKLL-SDPSPYVRKKAALALLKIYRKDP  146 (526)
T ss_dssp             -----HHHHHHHHHCSSSHHHHHHHHHHHHHH---SHHHHHH-----HHHHHHHHH-HSSSHHHHHHHHHHHHHHHHHCH
T ss_pred             -----HHHHHHHhhcCCCHHHHHHHHhhhhhhc--ccchhhH-----HHHHHHHHh-cCCchHHHHHHHHHHHHHhccCH
Confidence                 3678888899999999999999999997  2332222     456777777 78899999999999999987743


Q ss_pred             CCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhc
Q 011328          192 QPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVT  271 (488)
Q Consensus       192 ~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~  271 (488)
                      ..  .... +++.+.+++.+.++.++..|+.++..+ ..++.....+. ...+..|.+++...+|..+..++.++..++.
T Consensus       147 ~~--~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~~~-~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~  221 (526)
T PF01602_consen  147 DL--VEDE-LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYKSLI-PKLIRILCQLLSDPDPWLQIKILRLLRRYAP  221 (526)
T ss_dssp             CC--HHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHTTHH-HHHHHHHHHHHTCCSHHHHHHHHHHHTTSTS
T ss_pred             HH--HHHH-HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhhhhH-HHHHHHhhhcccccchHHHHHHHHHHHhccc
Confidence            32  1112 689999999999999999999999999 33322211111 2455666666788899999999999999987


Q ss_pred             CCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHH
Q 011328          272 GDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAI  351 (488)
Q Consensus       272 ~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL  351 (488)
                      ..+.....   ..+++.+...+++. ++.|..+++.++..+... +.     .-..+++.|..++.++++.++..++.+|
T Consensus       222 ~~~~~~~~---~~~i~~l~~~l~s~-~~~V~~e~~~~i~~l~~~-~~-----~~~~~~~~L~~lL~s~~~nvr~~~L~~L  291 (526)
T PF01602_consen  222 MEPEDADK---NRIIEPLLNLLQSS-SPSVVYEAIRLIIKLSPS-PE-----LLQKAINPLIKLLSSSDPNVRYIALDSL  291 (526)
T ss_dssp             SSHHHHHH---HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHSSS-HH-----HHHHHHHHHHHHHTSSSHHHHHHHHHHH
T ss_pred             CChhhhhH---HHHHHHHHHHhhcc-ccHHHHHHHHHHHHhhcc-hH-----HHHhhHHHHHHHhhcccchhehhHHHHH
Confidence            66544421   35678888899888 999999999999988765 33     2234788899999999999999999999


Q ss_pred             HHhccCCCHHHHHHHHHCCChHHHHhhcC-CCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHH
Q 011328          352 SNATSGGSNEQIKFLVSQGCIKPLCDLLN-CPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIE  430 (488)
Q Consensus       352 ~~l~~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~  430 (488)
                      ..++... +.   .+ .  ........+. +++..++..++..|..++....             +...      ++.|.
T Consensus       292 ~~l~~~~-~~---~v-~--~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~~n-------------~~~I------l~eL~  345 (526)
T PF01602_consen  292 SQLAQSN-PP---AV-F--NQSLILFFLLYDDDPSIRKKALDLLYKLANESN-------------VKEI------LDELL  345 (526)
T ss_dssp             HHHCCHC-HH---HH-G--THHHHHHHHHCSSSHHHHHHHHHHHHHH--HHH-------------HHHH------HHHHH
T ss_pred             HHhhccc-ch---hh-h--hhhhhhheecCCCChhHHHHHHHHHhhcccccc-------------hhhH------HHHHH
Confidence            9998754 11   11 1  2223333444 7889999999999998886544             1222      33344


Q ss_pred             Hhh-cCCCHHHHHHHHHHHHHhcCC
Q 011328          431 NLQ-SHDNTEIYEKAVKILETYWVE  454 (488)
Q Consensus       431 ~l~-~~~~~~v~~~a~~~l~~~~~~  454 (488)
                      ... +..+++++..+...+..+...
T Consensus       346 ~~l~~~~d~~~~~~~i~~I~~la~~  370 (526)
T PF01602_consen  346 KYLSELSDPDFRRELIKAIGDLAEK  370 (526)
T ss_dssp             HHHHHC--HHHHHHHHHHHHHHHHH
T ss_pred             HHHHhccchhhhhhHHHHHHHHHhc
Confidence            444 455666777776666655443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>PTZ00429 beta-adaptin; Provisional

Probab=99.48  E-value=2.5e-10  Score=115.94  Aligned_cols=372  Identities=13%  Similarity=0.108  Sum_probs=228.1

Q ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhH
Q 011328           31 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR  110 (488)
Q Consensus        31 ~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~  110 (488)
                      .++.+++++.+.|..++...--.+.+.+... ++..  +   -++..+.+=+++++ +.+|..|+++++++-.  ++...
T Consensus        69 LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~-pela--l---LaINtl~KDl~d~N-p~IRaLALRtLs~Ir~--~~i~e  139 (746)
T PTZ00429         69 LFVDVVKLAPSTDLELKKLVYLYVLSTARLQ-PEKA--L---LAVNTFLQDTTNSS-PVVRALAVRTMMCIRV--SSVLE  139 (746)
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHcccC-hHHH--H---HHHHHHHHHcCCCC-HHHHHHHHHHHHcCCc--HHHHH
Confidence            3445666777777777777777777765432 2211  1   14667777788888 8999999999988765  33333


Q ss_pred             HHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCC
Q 011328          111 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK  190 (488)
Q Consensus       111 ~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~  190 (488)
                      .     +++.+.+.+.+.++-||..|+.++..+...+++   .+.+.+.++.+.+++ .+.++.+..+|+.+|..+....
T Consensus       140 ~-----l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pe---lv~~~~~~~~L~~LL-~D~dp~Vv~nAl~aL~eI~~~~  210 (746)
T PTZ00429        140 Y-----TLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ---LFYQQDFKKDLVELL-NDNNPVVASNAAAIVCEVNDYG  210 (746)
T ss_pred             H-----HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc---cccccchHHHHHHHh-cCCCccHHHHHHHHHHHHHHhC
Confidence            3     357778888899999999999999999776553   344556778888887 7889999999999999998765


Q ss_pred             CCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhh
Q 011328          191 PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIV  270 (488)
Q Consensus       191 ~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~  270 (488)
                      +. ......+.+..++..+..-++..+...+.+|......++...     ..++..+...|++.++.|...|++++.++.
T Consensus       211 ~~-~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~e~-----~~il~~l~~~Lq~~N~AVVl~Aik~il~l~  284 (746)
T PTZ00429        211 SE-KIESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSDKESA-----ETLLTRVLPRMSHQNPAVVMGAIKVVANLA  284 (746)
T ss_pred             ch-hhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcHHH-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHhc
Confidence            43 234456667777777777778888888888866433222221     256788888899999999999999999887


Q ss_pred             cCC-chhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHH------------------------
Q 011328          271 TGD-DMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIE------------------------  325 (488)
Q Consensus       271 ~~~-~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~------------------------  325 (488)
                      ... +.....+.. .+...++.++ ++ ++++|..++..+.-+....+.....-++                        
T Consensus       285 ~~~~~~~~~~~~~-rl~~pLv~L~-ss-~~eiqyvaLr~I~~i~~~~P~lf~~~~~~Ff~~~~Dp~yIK~~KLeIL~~La  361 (746)
T PTZ00429        285 SRCSQELIERCTV-RVNTALLTLS-RR-DAETQYIVCKNIHALLVIFPNLLRTNLDSFYVRYSDPPFVKLEKLRLLLKLV  361 (746)
T ss_pred             CcCCHHHHHHHHH-HHHHHHHHhh-CC-CccHHHHHHHHHHHHHHHCHHHHHHHHHhhhcccCCcHHHHHHHHHHHHHHc
Confidence            542 222222211 2334455554 34 5677877777776665544432221110                        


Q ss_pred             -----cCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHh
Q 011328          326 -----AGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKA  400 (488)
Q Consensus       326 -----~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~  400 (488)
                           ..++..|.....+.+.+++..+..+++.++..-. ....     .++..|.++++.... +...++..+.+++..
T Consensus       362 ne~Nv~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~-~~a~-----~cV~~Ll~ll~~~~~-~v~e~i~vik~Ilrk  434 (746)
T PTZ00429        362 TPSVAPEILKELAEYASGVDMVFVVEVVRAIASLAIKVD-SVAP-----DCANLLLQIVDRRPE-LLPQVVTAAKDIVRK  434 (746)
T ss_pred             CcccHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhCh-HHHH-----HHHHHHHHHhcCCch-hHHHHHHHHHHHHHH
Confidence                 0122333333334455556666666666654321 1111     245566665554332 233445555555443


Q ss_pred             hhhhhccCCCCccchHHHHHHhhccHHHHHHh---hcCCCHHHHHHHHHHHHHhcCCC
Q 011328          401 GEAEKNMGNTGGVNLFAQAIDDAEGLEKIENL---QSHDNTEIYEKAVKILETYWVEE  455 (488)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l---~~~~~~~v~~~a~~~l~~~~~~~  455 (488)
                      .+.             ..      .+..|...   ..-.+++.+....|++..|-+.-
T Consensus       435 yP~-------------~~------il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~I  473 (746)
T PTZ00429        435 YPE-------------LL------MLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDFI  473 (746)
T ss_pred             Ccc-------------HH------HHHHHHHhhcccccccHHHHHHHHHHHHhhHhhH
Confidence            221             00      12222221   12345667777788888886543

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=99.48  E-value=1.1e-10  Score=110.00  Aligned_cols=322  Identities=14%  Similarity=0.177  Sum_probs=230.1

Q ss_pred             CCHHHHHHhhCC-CCHHHHHHHHHHHhhhhCCCchhHHHHHhc-----CChHHHHHHhcccccHhHHHHHHHHHHHhhcC
Q 011328          116 GAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSN-----GALMPLLAQFNEHAKLSMLRNATWTLSNFCRG  189 (488)
Q Consensus       116 g~i~~L~~~L~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-----~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~  189 (488)
                      ..+..++.++.. ..+++.+..+..+..+....+.....+.+.     ....+++.+| ...|.-+...++..|..+...
T Consensus        53 ~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL-~~~d~~i~~~a~~iLt~l~~~  131 (429)
T cd00256          53 QYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLL-NRQDQFIVHMSFSILAKLACF  131 (429)
T ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHH-cCCchhHHHHHHHHHHHHHhc
Confidence            456677777765 678899999999999988877655555553     4567788888 567888999999999998866


Q ss_pred             CCCCCh-hhhhchHHHHHHhhccC-ChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCC--CcchHhHHHHH
Q 011328          190 KPQPLF-EQTRPALPALERLIHSN-DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP--SPSVLIPALRT  265 (488)
Q Consensus       190 ~~~~~~-~~~~~~~~~l~~ll~~~-~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~--~~~v~~~a~~~  265 (488)
                      .+.... ......++.+...++++ +...+..++.++..+...+..+ ..+.+.++++.|+++|+..  ..+++..++.+
T Consensus       132 ~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R-~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~  210 (429)
T cd00256         132 GLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYR-FAFVLADGVPTLVKLLSNATLGFQLQYQSIFC  210 (429)
T ss_pred             CccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHH-HHHHHccCHHHHHHHHhhccccHHHHHHHHHH
Confidence            532211 12223455666666654 4677778889999998877544 6677888999999999763  45788899999


Q ss_pred             HhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCC------HHHHHHHHHcCChHHHHHHHhcC
Q 011328          266 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGN------VNQIQAIIEAGIIGPLVNLLLNA  339 (488)
Q Consensus       266 L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~------~~~~~~l~~~~~l~~L~~ll~~~  339 (488)
                      ++-++...+ ........++++.++++++.....++-+-++.++.|+...+      ......+++.|+.+.+-.+-..+
T Consensus       211 lWlLSF~~~-~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk  289 (429)
T cd00256         211 IWLLTFNPH-AAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQRK  289 (429)
T ss_pred             HHHHhccHH-HHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhcCC
Confidence            999998544 44555677999999999988778899999999999999832      22344566766666554444433


Q ss_pred             --ChhHHHHHHHH-------HHHhccCC------------------C----HHHHHHHHHC--CChHHHHhhcC-CCCHH
Q 011328          340 --EFEIKKEAAWA-------ISNATSGG------------------S----NEQIKFLVSQ--GCIKPLCDLLN-CPDPR  385 (488)
Q Consensus       340 --~~~v~~~a~~a-------L~~l~~~~------------------~----~~~~~~l~~~--~~i~~L~~ll~-~~~~~  385 (488)
                        |+++....-..       +..++...                  +    .++...+.++  .++..|.++++ +.|+.
T Consensus       290 ~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~  369 (429)
T cd00256         290 YDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDPI  369 (429)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCcc
Confidence              55543222111       11111100                  1    2334444444  34788888885 56777


Q ss_pred             HHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 011328          386 IVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYW  452 (488)
Q Consensus       386 v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~~~~~v~~~a~~~l~~~~  452 (488)
                      +...|+.=++.+++.-+.            .+..+.+.|+-+.+.++++++|++|+..|...+.++.
T Consensus       370 ~laVAc~Dige~vr~~P~------------gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm  424 (429)
T cd00256         370 ILAVACHDIGEYVRHYPR------------GKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLM  424 (429)
T ss_pred             eeehhhhhHHHHHHHCcc------------HHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            888888888988887654            3777889999999999999999999999999988764

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=99.44  E-value=5.7e-11  Score=111.92  Aligned_cols=323  Identities=11%  Similarity=0.076  Sum_probs=228.8

Q ss_pred             cHHHHHHHhcC-CCHHHHHHHHHHHHHHhccCCCccHHHHHHc-----CCHHHHHHhhcCCCChhHHHHHHHHHHHhcCC
Q 011328           31 SLPAMVAGVWS-DDRNIQLDATTQFRKLLSIERSPPINEVIQS-----GVVPRFIEFLSRDDFPQLQFEAAWALTNIASG  104 (488)
Q Consensus        31 ~i~~l~~~L~s-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~-----~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~  104 (488)
                      ....++++|+. ..+++....+..+..++... +.....+.+.     +....++.+|..++ .-+...|+.+++.+...
T Consensus        54 y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~-~~~~~~f~~~~~~~~~~~~~fl~lL~~~d-~~i~~~a~~iLt~l~~~  131 (429)
T cd00256          54 YVKTFVNLLSQIDKDDTVRYVLTLIDDMLQED-DTRVKLFHDDALLKKKTWEPFFNLLNRQD-QFIVHMSFSILAKLACF  131 (429)
T ss_pred             HHHHHHHHHhccCcHHHHHHHHHHHHHHHHhc-hHHHHHHHHHhhccccchHHHHHHHcCCc-hhHHHHHHHHHHHHHhc
Confidence            35567777764 66788888999999988765 4555555543     56788888998888 79999999999999874


Q ss_pred             CchhhHHHHhCCCHHHHHHhhCC-CCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccc-cHhHHHHHHHH
Q 011328          105 TSENTRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHA-KLSMLRNATWT  182 (488)
Q Consensus       105 ~~~~~~~~~~~g~i~~L~~~L~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~-~~~v~~~a~~~  182 (488)
                      ++.........-.++.+...+++ .+...+..++.++..+....+ +|..+.+.++++.|+..|.... +.+++..++.+
T Consensus       132 ~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~-~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~  210 (429)
T cd00256         132 GLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDE-YRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFC  210 (429)
T ss_pred             CccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCch-HHHHHHHccCHHHHHHHHhhccccHHHHHHHHHH
Confidence            44322111111123445555655 357788888999999987655 7888888889999999996544 66899999999


Q ss_pred             HHHhhcCCCCCChhhhhchHHHHHHhhcc-CChhHHHHHHHHHHHhccCCc------hhHHHHHHhCCHHHHHHhcCC--
Q 011328          183 LSNFCRGKPQPLFEQTRPALPALERLIHS-NDDEVLTDACWALSYLSDGTN------DKIQAVIEAGVCPRLVELLRH--  253 (488)
Q Consensus       183 L~~l~~~~~~~~~~~~~~~~~~l~~ll~~-~~~~v~~~al~~L~~l~~~~~------~~~~~~~~~~~l~~L~~lL~~--  253 (488)
                      ++-++...+........+.++.++++++. ...++..-++.++.|+...+.      .....++..++++.+-.+...  
T Consensus       211 lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~  290 (429)
T cd00256         211 IWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQRKY  290 (429)
T ss_pred             HHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhcCCC
Confidence            99999876544444557899999999985 478999999999999997431      233445665665544444333  


Q ss_pred             CCcchHhHHHH-------HHhHhhcC--------------Cch---------hhHHHhh--CCChHHHHHHhcccchhhH
Q 011328          254 PSPSVLIPALR-------TVGNIVTG--------------DDM---------QTQCIIN--HQALPCLLDLLTQNYKKSI  301 (488)
Q Consensus       254 ~~~~v~~~a~~-------~L~~l~~~--------------~~~---------~~~~~~~--~~~~~~L~~lL~~~~~~~v  301 (488)
                      .++++....-.       .+..++..              +|.         +...+-+  ..++..|+++|..+.++.+
T Consensus       291 ~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~~  370 (429)
T cd00256         291 DDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDPII  370 (429)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCcce
Confidence            34444332211       11112210              111         1122222  2357889999965547888


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhcc
Q 011328          302 KKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS  356 (488)
Q Consensus       302 ~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~  356 (488)
                      ..-||.=++.++...|..+..+-+.|+=..+++++.++|++||.+|+.|+..+..
T Consensus       371 laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~  425 (429)
T cd00256         371 LAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLMV  425 (429)
T ss_pred             eehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            8899999999999778777777788999999999999999999999999998864

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>PTZ00429 beta-adaptin; Provisional

Probab=99.44  E-value=1.5e-09  Score=110.33  Aligned_cols=294  Identities=14%  Similarity=0.093  Sum_probs=207.7

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh
Q 011328           30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT  109 (488)
Q Consensus        30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~  109 (488)
                      |-+..|-+.|.+.+...+..+++.+....... .+..      .+++..++++.+++ .++|.-+...+.+++...++..
T Consensus        32 ge~~ELr~~L~s~~~~~kk~alKkvIa~mt~G-~DvS------~LF~dVvk~~~S~d-~elKKLvYLYL~~ya~~~pela  103 (746)
T PTZ00429         32 GEGAELQNDLNGTDSYRKKAAVKRIIANMTMG-RDVS------YLFVDVVKLAPSTD-LELKKLVYLYVLSTARLQPEKA  103 (746)
T ss_pred             chHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC-CCch------HHHHHHHHHhCCCC-HHHHHHHHHHHHHHcccChHHH
Confidence            56677888888888888888888766655443 2322      35677788889888 8999999999999988666543


Q ss_pred             HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcC
Q 011328          110 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG  189 (488)
Q Consensus       110 ~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~  189 (488)
                      -.     .++.+.+=+.++++.+|..|+++++++-.  +...+.     .+..+.+.+ .+.++-||+.|+.++.++...
T Consensus       104 lL-----aINtl~KDl~d~Np~IRaLALRtLs~Ir~--~~i~e~-----l~~~lkk~L-~D~~pYVRKtAalai~Kly~~  170 (746)
T PTZ00429        104 LL-----AVNTFLQDTTNSSPVVRALAVRTMMCIRV--SSVLEY-----TLEPLRRAV-ADPDPYVRKTAAMGLGKLFHD  170 (746)
T ss_pred             HH-----HHHHHHHHcCCCCHHHHHHHHHHHHcCCc--HHHHHH-----HHHHHHHHh-cCCCHHHHHHHHHHHHHHHhh
Confidence            22     36888888889999999999999999843  222222     345566667 788999999999999999876


Q ss_pred             CCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHh
Q 011328          190 KPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNI  269 (488)
Q Consensus       190 ~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l  269 (488)
                      .+  ......+.++.+.+++.+.|+.|...|+.+|..+....+....  ...+.+..++..+..-++..+...+.+|...
T Consensus       171 ~p--elv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~--l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y  246 (746)
T PTZ00429        171 DM--QLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIE--SSNEWVNRLVYHLPECNEWGQLYILELLAAQ  246 (746)
T ss_pred             Cc--ccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhH--HHHHHHHHHHHHhhcCChHHHHHHHHHHHhc
Confidence            54  2334457888999999999999999999999999876554322  2335567777778777777888888877553


Q ss_pred             hcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcC-CHHHHHHHHHcCChHHHHHHHhcCChhHHHHHH
Q 011328          270 VTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG-NVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAA  348 (488)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~  348 (488)
                      .-.++...     ..++..+...|++. ++.|..+|+.++.++... +++....... .+-+.++.+ .+++++++-.++
T Consensus       247 ~P~~~~e~-----~~il~~l~~~Lq~~-N~AVVl~Aik~il~l~~~~~~~~~~~~~~-rl~~pLv~L-~ss~~eiqyvaL  318 (746)
T PTZ00429        247 RPSDKESA-----ETLLTRVLPRMSHQ-NPAVVMGAIKVVANLASRCSQELIERCTV-RVNTALLTL-SRRDAETQYIVC  318 (746)
T ss_pred             CCCCcHHH-----HHHHHHHHHHhcCC-CHHHHHHHHHHHHHhcCcCCHHHHHHHHH-HHHHHHHHh-hCCCccHHHHHH
Confidence            32222111     24677888888898 899999999999988763 2333333222 133445554 344566666666


Q ss_pred             HHHHHhcc
Q 011328          349 WAISNATS  356 (488)
Q Consensus       349 ~aL~~l~~  356 (488)
                      ..+.-++.
T Consensus       319 r~I~~i~~  326 (746)
T PTZ00429        319 KNIHALLV  326 (746)
T ss_pred             HHHHHHHH
Confidence            66655544

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=99.44  E-value=3.6e-12  Score=101.38  Aligned_cols=119  Identities=35%  Similarity=0.621  Sum_probs=109.9

Q ss_pred             HHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCC
Q 011328           68 EVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDS  147 (488)
Q Consensus        68 ~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~  147 (488)
                      .+++.|+++.+++++.+++ .+++..++++|.+++..+++.+..+.+.|+++.++.++.++++.++..++++|++++.+.
T Consensus         2 ~~~~~~~i~~l~~~l~~~~-~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~   80 (120)
T cd00020           2 AVIQAGGLPALVSLLSSSD-ENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGP   80 (120)
T ss_pred             hHHHcCChHHHHHHHHcCC-HHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCc
Confidence            3567899999999999998 899999999999999977999999999999999999999999999999999999999988


Q ss_pred             chhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhc
Q 011328          148 PKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR  188 (488)
Q Consensus       148 ~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~  188 (488)
                      +.....+.+.|.++.+++.+ .+.+..++..++++|.+++.
T Consensus        81 ~~~~~~~~~~g~l~~l~~~l-~~~~~~~~~~a~~~l~~l~~  120 (120)
T cd00020          81 EDNKLIVLEAGGVPKLVNLL-DSSNEDIQKNATGALSNLAS  120 (120)
T ss_pred             HHHHHHHHHCCChHHHHHHH-hcCCHHHHHHHHHHHHHhhC
Confidence            77778888899999999999 66688999999999999873

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.43  E-value=3.2e-11  Score=116.52  Aligned_cols=361  Identities=15%  Similarity=0.099  Sum_probs=240.8

Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHH
Q 011328           34 AMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVI  113 (488)
Q Consensus        34 ~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~  113 (488)
                      .++..|++..|...-.|+.++..++..+ -+..   ...++++.|+....++....++..++.+++-+|.+-......-.
T Consensus        94 ~il~tL~~~ep~~~s~Aaq~va~IA~~E-lP~n---~wp~li~~lv~nv~~~~~~~~k~~slealGyice~i~pevl~~~  169 (859)
T KOG1241|consen   94 NILRTLGSPEPRRPSSAAQCVAAIACIE-LPQN---QWPELIVTLVSNVGEEQASMVKESSLEALGYICEDIDPEVLEQQ  169 (859)
T ss_pred             HHHHHcCCCCCCccchHHHHHHHHHHhh-Cchh---hCHHHHHHHHHhcccccchHHHHHHHHHHHHHHccCCHHHHHHH
Confidence            5778888888888888888998888765 2211   12345666666666666346999999999999984322222222


Q ss_pred             hCCCHHHHHHhhCC--CCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCC
Q 011328          114 DHGAVPIFVRLLSS--PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP  191 (488)
Q Consensus       114 ~~g~i~~L~~~L~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~  191 (488)
                      .+.++..++.-.+.  ++..+|-.|+.+|.|-.+.....-..-.+.+.+...+--.-+++|.+++..|..+|..+..-..
T Consensus       170 sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY  249 (859)
T KOG1241|consen  170 SNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYY  249 (859)
T ss_pred             HhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHH
Confidence            34667777776665  6889999999999986543322222223333333333222367899999999999998876431


Q ss_pred             CC-ChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchh---------------HHHHHH---hCCHHHHHHhcC
Q 011328          192 QP-LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDK---------------IQAVIE---AGVCPRLVELLR  252 (488)
Q Consensus       192 ~~-~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~---------------~~~~~~---~~~l~~L~~lL~  252 (488)
                      .. ..-.....+..-+..+++++++|...++..-++++...-+.               ...+.+   .+++|.|+++|.
T Consensus       250 ~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~  329 (859)
T KOG1241|consen  250 EFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLT  329 (859)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHH
Confidence            11 11122335666667778999999999999999888532210               011111   156788888885


Q ss_pred             C-------CCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHH
Q 011328          253 H-------PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIE  325 (488)
Q Consensus       253 ~-------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~  325 (488)
                      +       .++.....|-.||.-++......   ++. .+++.+-.-++++ +++-|..|+.+++.+..+.......-+.
T Consensus       330 kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~---Iv~-~Vl~Fiee~i~~p-dwr~reaavmAFGSIl~gp~~~~Lt~iV  404 (859)
T KOG1241|consen  330 KQDEDDDDDDWNPAKAAGVCLMLFAQCVGDD---IVP-HVLPFIEENIQNP-DWRNREAAVMAFGSILEGPEPDKLTPIV  404 (859)
T ss_pred             hCCCCcccccCcHHHHHHHHHHHHHHHhccc---chh-hhHHHHHHhcCCc-chhhhhHHHHHHHhhhcCCchhhhhHHH
Confidence            4       23567777777777766533221   222 4556666677788 9999999999999999865444444455


Q ss_pred             cCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhh
Q 011328          326 AGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAE  404 (488)
Q Consensus       326 ~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~  404 (488)
                      .+.+|.++.++.++...++..+.|+|+.++..............+.+..+..-+. +.|.+..+++|++.++.+...+.
T Consensus       405 ~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~-DePrva~N~CWAf~~Laea~~eA  482 (859)
T KOG1241|consen  405 IQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLN-DEPRVASNVCWAFISLAEAAYEA  482 (859)
T ss_pred             hhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhh-hCchHHHHHHHHHHHHHHHHHHh
Confidence            6799999999998888999999999999997653222222233345566666555 46788899999999998655443

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=99.40  E-value=6.9e-12  Score=99.76  Aligned_cols=117  Identities=33%  Similarity=0.505  Sum_probs=109.5

Q ss_pred             HHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCH
Q 011328          238 VIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNV  317 (488)
Q Consensus       238 ~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~  317 (488)
                      +++.|+++.+++++.+.++.++..++++|++++...+.....+.+.++++.+.+++.++ ++.++..++++++|++...+
T Consensus         3 ~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~-~~~v~~~a~~~L~~l~~~~~   81 (120)
T cd00020           3 VIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE-DEEVVKAALWALRNLAAGPE   81 (120)
T ss_pred             HHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCC-CHHHHHHHHHHHHHHccCcH
Confidence            56779999999999999999999999999999998888888888999999999999998 99999999999999999877


Q ss_pred             HHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhc
Q 011328          318 NQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNAT  355 (488)
Q Consensus       318 ~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~  355 (488)
                      .....+.+.|+++.+++++...+.++++.++++|.+++
T Consensus        82 ~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~  119 (120)
T cd00020          82 DNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA  119 (120)
T ss_pred             HHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence            77888889999999999999999999999999999986

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.35  E-value=3.3e-10  Score=110.85  Aligned_cols=343  Identities=15%  Similarity=0.173  Sum_probs=248.6

Q ss_pred             ccHHHHHHHhcC-CCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchh
Q 011328           30 ESLPAMVAGVWS-DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN  108 (488)
Q Consensus        30 ~~i~~l~~~L~s-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~  108 (488)
                      ..+|.|+.+|+. .++++...|+++|..+..-- +.....+++.++||.|++-|..-.+-++.++++.+|-.|+...   
T Consensus       211 slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evl-P~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H---  286 (1051)
T KOG0168|consen  211 SLVPVLVALLSHEHNFDIMLLACRALTYLCEVL-PRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRH---  286 (1051)
T ss_pred             HHHHHHHHHHhccccHHHHHHHHHHHHHHHhhc-cchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhc---
Confidence            457889999996 57999999999999988765 5667788899999999998888777899999999999998833   


Q ss_pred             hHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCC-chhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhh
Q 011328          109 TRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDS-PKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFC  187 (488)
Q Consensus       109 ~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~  187 (488)
                      -..+++.|.+...+.++.--+...++.|+.+.+|.|..- ++-...+++  .++.|..+| ...|....+.++.++..++
T Consensus       287 ~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v~e--alPlL~~lL-s~~D~k~ies~~ic~~ri~  363 (1051)
T KOG0168|consen  287 PKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHFVME--ALPLLTPLL-SYQDKKPIESVCICLTRIA  363 (1051)
T ss_pred             cHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHH--HHHHHHHHH-hhccchhHHHHHHHHHHHH
Confidence            356778999999999998888999999999999999532 222234444  688888888 7778888999999999988


Q ss_pred             cCC-CCC---ChhhhhchHHHHHHhhccC----ChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCC----
Q 011328          188 RGK-PQP---LFEQTRPALPALERLIHSN----DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPS----  255 (488)
Q Consensus       188 ~~~-~~~---~~~~~~~~~~~l~~ll~~~----~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~----  255 (488)
                      ... +..   ......+.+....+++.-.    +..+....++.+..++...+.....+.+.++...+..+|...+    
T Consensus       364 d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~s~s~n  443 (1051)
T KOG0168|consen  364 DGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGYSKSAN  443 (1051)
T ss_pred             HhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhccCcCcc
Confidence            765 222   2233367888888887643    3445666777788888887777777777777777777764311    


Q ss_pred             ----------cchHhHHH----------------------------------------------------HHHhHhh---
Q 011328          256 ----------PSVLIPAL----------------------------------------------------RTVGNIV---  270 (488)
Q Consensus       256 ----------~~v~~~a~----------------------------------------------------~~L~~l~---  270 (488)
                                |.-.....                                                    +++..+-   
T Consensus       444 as~~~~l~r~Pnel~e~~sl~~eLlp~~p~e~i~~~~~~~~~~~~n~~~~~~~~~~d~~~s~~~~~~~~~ri~~q~~~~~  523 (1051)
T KOG0168|consen  444 ASLHELLSRSPNELYELTSLIIELLPCLPVEGIFAVDCSLIYEIVNLADELLWQWRDDRGSWHTYTNIDSRIIEQINEDT  523 (1051)
T ss_pred             cccccccccCcHHHHHHHHHHheeecCCcccceeehhhhhhcccccccccccccCccccccccccchhhhhhhhhhccCc
Confidence                      00000000                                                    0011000   


Q ss_pred             -------------------cCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhc-CCHHHHHHHHHcC-Ch
Q 011328          271 -------------------TGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA-GNVNQIQAIIEAG-II  329 (488)
Q Consensus       271 -------------------~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~-~l  329 (488)
                                         ...++..+.+.. .+++.|+++..+.-++.||..++.+|..+.. .+.+.+..++... +-
T Consensus       524 ~t~~~~~dkl~~~~r~~~l~nqpel~q~F~~-~llpVLveVYsSsA~~~VR~kcL~Ailrlvy~s~seli~slLk~~~vS  602 (1051)
T KOG0168|consen  524 GTSRKQQDKLNGSAREGLLKNQPELLQSFGK-DLLPVLVEVYSSSANPDVRYKCLSAILRLVYFSNSELIGSLLKNTNVS  602 (1051)
T ss_pred             ccchhhhhhcCCchhhhhhhcCHHHHHHHHH-HHHHHHHHHHhccCCchhhHHHHHHHHHHHhhCCHHHHHHHHhcchHH
Confidence                               000011111111 4678888888877799999999999999988 6788888887644 45


Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcC
Q 011328          330 GPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLN  380 (488)
Q Consensus       330 ~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~  380 (488)
                      ..+-.+|.+++..+..-|+...--++..-..-+...+...|++..+-++..
T Consensus       603 S~lAG~lsskD~~vlVgALQvAEiLmeKlpd~F~~~F~REGV~~~v~~L~~  653 (1051)
T KOG0168|consen  603 SHLAGMLSSKDLTVLVGALQVAEILMEKLPDTFSPSFRREGVFHAVKQLSV  653 (1051)
T ss_pred             HHHHhhhhcCCCeeEeehHHHHHHHHHHhHHHhhhhHhhhhHHHHHHHHhc
Confidence            566678888888887777777777776554456677788888888888776

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.34  E-value=4.9e-10  Score=108.59  Aligned_cols=329  Identities=14%  Similarity=0.144  Sum_probs=224.1

Q ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhH
Q 011328           31 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR  110 (488)
Q Consensus        31 ~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~  110 (488)
                      .+|.+-+.++++|..-+..|+.++..++.+. .+....-+..+++|.+++++.++. .-++..+.|+++.++...++.+.
T Consensus       365 Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp-~~~~Lt~iV~qalp~ii~lm~D~s-l~VkdTaAwtlgrI~d~l~e~~~  442 (859)
T KOG1241|consen  365 VLPFIEENIQNPDWRNREAAVMAFGSILEGP-EPDKLTPIVIQALPSIINLMSDPS-LWVKDTAAWTLGRIADFLPEAII  442 (859)
T ss_pred             hHHHHHHhcCCcchhhhhHHHHHHHhhhcCC-chhhhhHHHhhhhHHHHHHhcCch-hhhcchHHHHHHHHHhhchhhcc
Confidence            4566666888999999999999999998876 444444455689999999999877 78999999999999997775443


Q ss_pred             H-HHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchh-----HHHHHhcCChHHHHHHhc------ccccHhHHHH
Q 011328          111 V-VIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC-----RDLVLSNGALMPLLAQFN------EHAKLSMLRN  178 (488)
Q Consensus       111 ~-~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~-----~~~~~~~~~l~~L~~ll~------~~~~~~v~~~  178 (488)
                      . ....+.++.++.-|. +.|.+..+++|++.+|+..-++.     +....+ ...+.++.-|.      +..+...|..
T Consensus       443 n~~~l~~~l~~l~~gL~-DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t-~~y~~ii~~Ll~~tdr~dgnqsNLR~A  520 (859)
T KOG1241|consen  443 NQELLQSKLSALLEGLN-DEPRVASNVCWAFISLAEAAYEAAVSNGQTDPAT-PFYEAIIGSLLKVTDRADGNQSNLRSA  520 (859)
T ss_pred             cHhhhhHHHHHHHHHhh-hCchHHHHHHHHHHHHHHHHHHhccCCCCCCccc-hhHHHHHHHHHhhccccccchhhHHHH
Confidence            2 223344555555554 46899999999999998321110     000111 23334444332      2245678899


Q ss_pred             HHHHHHHhhcCCCCCChhhhhchHHHHHHhh---------ccCC----hhHHHHHHHHHHHhccCCchhHHHHHHhCCHH
Q 011328          179 ATWTLSNFCRGKPQPLFEQTRPALPALERLI---------HSND----DEVLTDACWALSYLSDGTNDKIQAVIEAGVCP  245 (488)
Q Consensus       179 a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll---------~~~~----~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~  245 (488)
                      +..+|..+....+........+....+..-|         ...+    .+++...+.+|..+.......+..+.+ .++.
T Consensus       521 AYeALmElIk~st~~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d-~iM~  599 (859)
T KOG1241|consen  521 AYEALMELIKNSTDDVYPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGSDIREVSD-QIMG  599 (859)
T ss_pred             HHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccccchhHHH-HHHH
Confidence            9999999999886666665555555555422         1111    456677777777777544433343433 5778


Q ss_pred             HHHHhcCC-CCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHH
Q 011328          246 RLVELLRH-PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAII  324 (488)
Q Consensus       246 ~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~  324 (488)
                      .+++++.+ .+..+.+.|+.+++.++..-......-.. .+.|.|..-|++..+..|...|+..++.+++.-.+.+..+.
T Consensus       600 lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym~-~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i~py~  678 (859)
T KOG1241|consen  600 LFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFAKYMP-AFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDDILPYC  678 (859)
T ss_pred             HHHHHHcCCccccchHHHHHHHHHHHHHHhHhHHHHHH-HHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhhhhHH
Confidence            88888887 45568888998888888754444333333 57788888886665888999999999999985444444444


Q ss_pred             HcCChHHHHHHHhcC--ChhHHHHHHHHHHHhccCCCHHHHHHH
Q 011328          325 EAGIIGPLVNLLLNA--EFEIKKEAAWAISNATSGGSNEQIKFL  366 (488)
Q Consensus       325 ~~~~l~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~~~~~~~~l  366 (488)
                      + +++..|+..|+++  +.+||-..+.+++.++.....++.+++
T Consensus       679 d-~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAlaIg~~F~~Yl  721 (859)
T KOG1241|consen  679 D-ELMTVLVQCLSSPNLHRNVKPAILSVFGDIALAIGADFEPYL  721 (859)
T ss_pred             H-HHHHHHHHHccCccccccccchHHHHHHHHHHHHHHhHHHHH
Confidence            3 5788889999887  667777888888887765544444443

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=99.30  E-value=1.1e-09  Score=105.66  Aligned_cols=391  Identities=14%  Similarity=0.161  Sum_probs=251.1

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCC-hhHHHHHHHHHHHhcCCCchh
Q 011328           30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDF-PQLQFEAAWALTNIASGTSEN  108 (488)
Q Consensus        30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~-~~v~~~a~~~L~~l~~~~~~~  108 (488)
                      ..+.+++..++++.++.+..++....++...-.....+.-.+.-.+..++..++..+. ..+-.....++.+-...    
T Consensus       716 ~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gfg~V~~~lg~----  791 (1172)
T KOG0213|consen  716 PIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVNALGG----  791 (1172)
T ss_pred             HHHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHhh----
Confidence            3466678888899999999999998888776544445555555667777777776552 22222333333222221    


Q ss_pred             hHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhH--HHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHh
Q 011328          109 TRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR--DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNF  186 (488)
Q Consensus       109 ~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~--~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l  186 (488)
                      |-.-.-.-++..++..|++.++.+|..|+..++.++..-..|.  +.+...|.  .|.+.| ....+++.-..+.++..+
T Consensus       792 r~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGv--vLyEyl-geeypEvLgsILgAikaI  868 (1172)
T KOG0213|consen  792 RVKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGV--VLYEYL-GEEYPEVLGSILGAIKAI  868 (1172)
T ss_pred             ccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhH--HHHHhc-CcccHHHHHHHHHHHHHH
Confidence            1111111346677788999999999999999999874322221  12222222  456666 677889988888888887


Q ss_pred             hcCC-CCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHH
Q 011328          187 CRGK-PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT  265 (488)
Q Consensus       187 ~~~~-~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~  265 (488)
                      .... -.+...-..+++|.|..+|++...+++++++..++.++...++....---..+.--|+++|...+.++|++|..+
T Consensus       869 ~nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nT  948 (1172)
T KOG0213|consen  869 VNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNT  948 (1172)
T ss_pred             HHhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            7654 222333457899999999999999999999999999998776543321112333446777777788899999999


Q ss_pred             HhHhhcCCch--hhH----------------------HHhh-C---CChHHHHHHhcccchhhHHHHHHHHHHHHhcC-C
Q 011328          266 VGNIVTGDDM--QTQ----------------------CIIN-H---QALPCLLDLLTQNYKKSIKKEACWTISNITAG-N  316 (488)
Q Consensus       266 L~~l~~~~~~--~~~----------------------~~~~-~---~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~  316 (488)
                      ++.++..-..  ...                      .+.+ .   .++|.|+.=-..+ +..|+...+.+++.+... .
T Consensus       949 fG~IakaIGPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPalmneYrtP-e~nVQnGVLkalsf~Feyig 1027 (1172)
T KOG0213|consen  949 FGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVLPALMNEYRTP-EANVQNGVLKALSFMFEYIG 1027 (1172)
T ss_pred             hhHHHHhcCHHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCchhhhHHHHhhccCc-hhHHHHhHHHHHHHHHHHHH
Confidence            9988853110  000                      0001 1   2345555555556 777888888888877652 1


Q ss_pred             HHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcC-------CCCHHHHHH
Q 011328          317 VNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLN-------CPDPRIVTV  389 (488)
Q Consensus       317 ~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~-------~~~~~v~~~  389 (488)
                      ....+.+..  +.|.|-..|.+.|..-|+.|+.++.+++.+..        ..|..+.++.+|+       ++.|.++..
T Consensus      1028 emskdYiya--v~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~--------g~g~eda~iHLLN~iWpNIle~sPhviqa 1097 (1172)
T KOG0213|consen 1028 EMSKDYIYA--VTPLLEDALMDRDLVHRQTAMNVIKHLALGVP--------GTGCEDALIHLLNLIWPNILETSPHVIQA 1097 (1172)
T ss_pred             HHhhhHHHH--hhHHHHHhhccccHHHHHHHHHHHHHHhcCCC--------CcCcHHHHHHHHHHhhhhhcCCChHHHHH
Confidence            222233332  67788888888899999999999999987641        1244555555544       456777776


Q ss_pred             HHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCC
Q 011328          390 CLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVEEDE  457 (488)
Q Consensus       390 al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~~~  457 (488)
                      ..+++..+-                   ..+...-.++.+.+=+=|+..+|++....+++.++-...+
T Consensus      1098 ~~e~~eg~r-------------------~~Lg~~~~~~Y~~QGLFHParkVR~~yw~vyn~my~~~~d 1146 (1172)
T KOG0213|consen 1098 FDEAMEGLR-------------------VALGPQAMLKYCLQGLFHPARKVRKRYWTVYNSMYHGSQD 1146 (1172)
T ss_pred             HHHHHHHHH-------------------HHhchHHHHHHHHHhccCcHHHHHHHHHHHHHhHhhcccc
Confidence            666665442                   2222222345556666788889999988888877665443

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=99.20  E-value=3.1e-08  Score=90.36  Aligned_cols=322  Identities=14%  Similarity=0.151  Sum_probs=219.2

Q ss_pred             CHHHHHHhhCC-CCHHHHHHHHHHHhhhhCCCchhHHHHH------hcCChHHHHHHhcccccHhHHHHHHHHHHHhhcC
Q 011328          117 AVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVL------SNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG  189 (488)
Q Consensus       117 ~i~~L~~~L~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~------~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~  189 (488)
                      .+..++.+++. ..++....++..+..+-..++.....+.      ....-...+.++ ...+.-+.....+.++.++..
T Consensus        66 ~v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl~ll-~r~d~~iv~~~~~Ils~la~~  144 (442)
T KOG2759|consen   66 YVKTFINLLSHIDKDDTVQYVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFLNLL-NRQDTFIVEMSFRILSKLACF  144 (442)
T ss_pred             HHHHHHHHhchhhhHHHHHHHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHHHHHH-hcCChHHHHHHHHHHHHHHHh
Confidence            35566666665 4566666667666666544432211111      112245677777 556677777788889888876


Q ss_pred             CCCCChh-hhhchHHHHHHhhcc-CChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCC--CCcchHhHHHHH
Q 011328          190 KPQPLFE-QTRPALPALERLIHS-NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH--PSPSVLIPALRT  265 (488)
Q Consensus       190 ~~~~~~~-~~~~~~~~l~~ll~~-~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~--~~~~v~~~a~~~  265 (488)
                      ....... ...-....+-..+.+ .+......+.+||..+...++.+ ..++..+++..++..+.+  .+-+++...+.|
T Consensus       145 g~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR-~~~v~adg~~~l~~~l~s~~~~~QlQYqsifc  223 (442)
T KOG2759|consen  145 GNCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYR-YAFVIADGVSLLIRILASTKCGFQLQYQSIFC  223 (442)
T ss_pred             ccccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchh-heeeecCcchhhHHHHhccCcchhHHHHHHHH
Confidence            6332222 223334455555655 57778888899999999887655 446666778888888732  456888999999


Q ss_pred             HhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCH------HHHHHHHHcCChHHHHHHHhcC
Q 011328          266 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNV------NQIQAIIEAGIIGPLVNLLLNA  339 (488)
Q Consensus       266 L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~------~~~~~l~~~~~l~~L~~ll~~~  339 (488)
                      ++.|+. ++...+.+...+.++.|..++++....+|-+-++.++.|+....+      +....++..++.+.+-.+-+.+
T Consensus       224 iWlLtF-n~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rk  302 (442)
T KOG2759|consen  224 IWLLTF-NPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLEERK  302 (442)
T ss_pred             HHHhhc-CHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHHhcC
Confidence            999987 455556667779999999999888688899999999999998653      4455666777777666555544


Q ss_pred             --ChhHHHHHHHHH-------HHhccCC----------------------CHHHHHHHHHC--CChHHHHhhcCCCC-HH
Q 011328          340 --EFEIKKEAAWAI-------SNATSGG----------------------SNEQIKFLVSQ--GCIKPLCDLLNCPD-PR  385 (488)
Q Consensus       340 --~~~v~~~a~~aL-------~~l~~~~----------------------~~~~~~~l~~~--~~i~~L~~ll~~~~-~~  385 (488)
                        |+++....-..-       ..+++..                      =.+++..+.++  .++..|+.+|+.++ |.
T Consensus       303 ysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~  382 (442)
T KOG2759|consen  303 YSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPI  382 (442)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCc
Confidence              554432222211       1222110                      01334444444  35888888888655 77


Q ss_pred             HHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 011328          386 IVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWV  453 (488)
Q Consensus       386 v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~~~~~v~~~a~~~l~~~~~  453 (488)
                      +...|+.-++.++..-+.            .+..++..||-+.+.++++++|++|+..|...+.++..
T Consensus       383 iL~VAc~DIge~Vr~yP~------------gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~  438 (442)
T KOG2759|consen  383 ILCVACHDIGEYVRHYPE------------GKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMV  438 (442)
T ss_pred             eeehhhhhHHHHHHhCch------------HhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence            778888888888887765            37889999999999999999999999999998877643

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.16  E-value=1.5e-07  Score=91.97  Aligned_cols=326  Identities=14%  Similarity=0.184  Sum_probs=240.8

Q ss_pred             CCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCC--CCHHHHHHHHHHHhhhhCCCc--
Q 011328           73 GVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS--PTDDVREQAVWALGNVAGDSP--  148 (488)
Q Consensus        73 ~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~--~~~~v~~~a~~~L~~l~~~~~--  148 (488)
                      ..++.|+.-..+..-.+-|..|++.|..++.   ++|..+...| +++|+..|+.  .++++...++.++.++..+.+  
T Consensus        22 ETI~kLcDRvessTL~eDRR~A~rgLKa~sr---kYR~~Vga~G-mk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~   97 (970)
T KOG0946|consen   22 ETIEKLCDRVESSTLLEDRRDAVRGLKAFSR---KYREEVGAQG-MKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSP   97 (970)
T ss_pred             hHHHHHHHHHhhccchhhHHHHHHHHHHHHH---HHHHHHHHcc-cHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcch
Confidence            4678888888777667889999999999987   7777777666 8999999987  689999999999999986542  


Q ss_pred             ----h----------hHHH-HHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCCh---hhhhchHHHHHHhhc
Q 011328          149 ----K----------CRDL-VLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLF---EQTRPALPALERLIH  210 (488)
Q Consensus       149 ----~----------~~~~-~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~---~~~~~~~~~l~~ll~  210 (488)
                          .          +.+. +...+.+.-++..+ ...|-.||..++..+.++....+....   +....++..++.+|+
T Consensus        98 ~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~-e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~  176 (970)
T KOG0946|consen   98 EVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSL-EEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLR  176 (970)
T ss_pred             hhcccchhhhHHHHHHHHHHHcCchhHHHHHHHH-HhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHh
Confidence                1          1111 33345677777777 777889999999999999887744322   233678999999999


Q ss_pred             cCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCC----CcchHhHHHHHHhHhhcCCchhhHHHhhCCCh
Q 011328          211 SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP----SPSVLIPALRTVGNIVTGDDMQTQCIINHQAL  286 (488)
Q Consensus       211 ~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~----~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~  286 (488)
                      +....+|-.++..|..++..++...+.+.-.+++..|+.++..+    ..-|...|+..+.|+...+......+.+.+.+
T Consensus       177 DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i  256 (970)
T KOG0946|consen  177 DSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYI  256 (970)
T ss_pred             hhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccH
Confidence            99999999999999999998887666666668999999999763    23578889999999999888888888899999


Q ss_pred             HHHHHHhcccc--h--------hhH--HHHHHHHHHHHhc-CCH-----HHHHHHHHcCChHHHHHHHhcC--ChhHHHH
Q 011328          287 PCLLDLLTQNY--K--------KSI--KKEACWTISNITA-GNV-----NQIQAIIEAGIIGPLVNLLLNA--EFEIKKE  346 (488)
Q Consensus       287 ~~L~~lL~~~~--~--------~~v--~~~a~~~L~nl~~-~~~-----~~~~~l~~~~~l~~L~~ll~~~--~~~v~~~  346 (488)
                      +.|.++|....  +        .++  ...++.++..+.. +++     .+.+.+..++++..|+.++.++  ..+++..
T Consensus       257 ~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIlte  336 (970)
T KOG0946|consen  257 PRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILTE  336 (970)
T ss_pred             HHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHH
Confidence            99998874321  1        111  1356666666665 222     2224566789999999999887  5678999


Q ss_pred             HHHHHHHhccCCCHHHHHHHHHCC----------ChHHHHhhcCC-CCHHHHHHHHHHHHHHHHhhhhh
Q 011328          347 AAWAISNATSGGSNEQIKFLVSQG----------CIKPLCDLLNC-PDPRIVTVCLEGLENILKAGEAE  404 (488)
Q Consensus       347 a~~aL~~l~~~~~~~~~~~l~~~~----------~i~~L~~ll~~-~~~~v~~~al~~L~~l~~~~~~~  404 (488)
                      +..+++++.++.. ..-..+....          ++-.++.+..+ .....|..++.++..++..+...
T Consensus       337 siitvAevVRgn~-~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN~~g  404 (970)
T KOG0946|consen  337 SIITVAEVVRGNA-RNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDNDDG  404 (970)
T ss_pred             HHHHHHHHHHhch-HHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhcchhh
Confidence            9999999988653 2333333211          12233344443 34578888889988887666544

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=99.15  E-value=3.9e-09  Score=96.09  Aligned_cols=280  Identities=14%  Similarity=0.100  Sum_probs=203.2

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHH
Q 011328           32 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRV  111 (488)
Q Consensus        32 i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~  111 (488)
                      .+..+..|...+.-+...+.+.+..+++.. +.........=....|...++++.+++....|++||..+.. -++.|..
T Consensus       116 ~~~fl~ll~r~d~~iv~~~~~Ils~la~~g-~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~-~~eyR~~  193 (442)
T KOG2759|consen  116 WLSFLNLLNRQDTFIVEMSFRILSKLACFG-NCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLR-VDEYRYA  193 (442)
T ss_pred             hHHHHHHHhcCChHHHHHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhc-Ccchhhe
Confidence            667888898899888888999999988765 22221111111233445556664447888889999999998 8999999


Q ss_pred             HHhCCCHHHHHHhh-CC-CCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcC
Q 011328          112 VIDHGAVPIFVRLL-SS-PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG  189 (488)
Q Consensus       112 ~~~~g~i~~L~~~L-~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~  189 (488)
                      ++..+++..++..+ ++ .+..++-..+.+++.|+.+++. .+.+...+.++.|...+..+..+.|.+-++.++.|++..
T Consensus       194 ~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~-ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k  272 (442)
T KOG2759|consen  194 FVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHA-AEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDK  272 (442)
T ss_pred             eeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHH-HHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            99988899999988 33 6789999999999999877664 466677889999999998888999999999999999987


Q ss_pred             CCCCChh------hhhchHHHHHHhhcc---CChhHHHHHHHHHHH-------hcc---------------CCchh----
Q 011328          190 KPQPLFE------QTRPALPALERLIHS---NDDEVLTDACWALSY-------LSD---------------GTNDK----  234 (488)
Q Consensus       190 ~~~~~~~------~~~~~~~~l~~ll~~---~~~~v~~~al~~L~~-------l~~---------------~~~~~----  234 (488)
                      .+.....      ....-++..++.|..   .|+++....-..-..       +++               ++...    
T Consensus       273 ~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~F  352 (442)
T KOG2759|consen  273 GPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKF  352 (442)
T ss_pred             CchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccch
Confidence            6422221      123334444455542   244443332222111       111               11111    


Q ss_pred             ----HHHHHHh--CCHHHHHHhcCCC-CcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHH
Q 011328          235 ----IQAVIEA--GVCPRLVELLRHP-SPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACW  307 (488)
Q Consensus       235 ----~~~~~~~--~~l~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~  307 (488)
                          ...+-+.  .++..|+.+|+.+ +|.+..-|+.=++...++.|.....+.+.|+-+.+++++.++ +++||.+|+.
T Consensus       353 W~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~-d~~Vry~ALl  431 (442)
T KOG2759|consen  353 WRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHE-DPEVRYHALL  431 (442)
T ss_pred             HHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCC-CchHHHHHHH
Confidence                1112221  4788899999775 588888999999999999999998889999999999999999 9999999999


Q ss_pred             HHHHHhcC
Q 011328          308 TISNITAG  315 (488)
Q Consensus       308 ~L~nl~~~  315 (488)
                      ++..+..+
T Consensus       432 avQ~lm~~  439 (442)
T KOG2759|consen  432 AVQKLMVH  439 (442)
T ss_pred             HHHHHHhh
Confidence            98877653

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.13  E-value=5.2e-08  Score=95.51  Aligned_cols=370  Identities=16%  Similarity=0.207  Sum_probs=197.6

Q ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhH
Q 011328           31 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR  110 (488)
Q Consensus        31 ~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~  110 (488)
                      ..|.+.++|+..++-++..|+-+...+..+. ++...     .+++...++|.+.+ .-|...++..+..++..+++...
T Consensus       143 lapeVe~Ll~~~~~~irKKA~Lca~r~irK~-P~l~e-----~f~~~~~~lL~ek~-hGVL~~~l~l~~e~c~~~~~~l~  215 (866)
T KOG1062|consen  143 LAPEVERLLQHRDPYIRKKAALCAVRFIRKV-PDLVE-----HFVIAFRKLLCEKH-HGVLIAGLHLITELCKISPDALS  215 (866)
T ss_pred             hhHHHHHHHhCCCHHHHHHHHHHHHHHHHcC-chHHH-----HhhHHHHHHHhhcC-CceeeeHHHHHHHHHhcCHHHHH
Confidence            3444555555555555555555555555443 22221     23444455555555 45555555555555554444444


Q ss_pred             HHHhCCCHHHHHHhhCC---------------CCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhccc--ccH
Q 011328          111 VVIDHGAVPIFVRLLSS---------------PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEH--AKL  173 (488)
Q Consensus       111 ~~~~~g~i~~L~~~L~~---------------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~--~~~  173 (488)
                      .+.+  .++.|+..|+.               .+|-++-..++.|.-+-.+++...+.+-+  ++..+..--..+  --.
T Consensus       216 ~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~D--iLaqvatntdsskN~Gn  291 (866)
T KOG1062|consen  216 YFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMND--ILAQVATNTDSSKNAGN  291 (866)
T ss_pred             HHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHHH--HHHHHHhcccccccchh
Confidence            3332  33333333321               34556666666666665555443333221  111111111000  011


Q ss_pred             hHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCC
Q 011328          174 SMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH  253 (488)
Q Consensus       174 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~  253 (488)
                      .+...++.++..+-.+.     ....-++..+-++|.+.|..++.-++..|..+...++...+.     .=..++++|++
T Consensus       292 AILYE~V~TI~~I~~~~-----~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqr-----Hr~tIleCL~D  361 (866)
T KOG1062|consen  292 AILYECVRTIMDIRSNS-----GLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQR-----HRSTILECLKD  361 (866)
T ss_pred             HHHHHHHHHHHhccCCc-----hHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHH-----HHHHHHHHhcC
Confidence            23334444444332221     122335566667777777777777777777777666544332     22568889999


Q ss_pred             CCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcC-CHHHHHHH---------
Q 011328          254 PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG-NVNQIQAI---------  323 (488)
Q Consensus       254 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l---------  323 (488)
                      ++..+++.|+..+..+..  +.+.+.     .+..|+..|.+. +++.|...+..+..++.. .|+.+..+         
T Consensus       362 pD~SIkrralELs~~lvn--~~Nv~~-----mv~eLl~fL~~~-d~~~k~~~as~I~~laEkfaP~k~W~idtml~Vl~~  433 (866)
T KOG1062|consen  362 PDVSIKRRALELSYALVN--ESNVRV-----MVKELLEFLESS-DEDFKADIASKIAELAEKFAPDKRWHIDTMLKVLKT  433 (866)
T ss_pred             CcHHHHHHHHHHHHHHhc--cccHHH-----HHHHHHHHHHhc-cHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHh
Confidence            999999999998888875  334443     345688888887 888888888888877762 23322221         


Q ss_pred             ----HHcCChHHHHHHHhcC-------------------------ChhHHHHHHHHHHHhc----cCCCHHHHHHHHHCC
Q 011328          324 ----IEAGIIGPLVNLLLNA-------------------------EFEIKKEAAWAISNAT----SGGSNEQIKFLVSQG  370 (488)
Q Consensus       324 ----~~~~~l~~L~~ll~~~-------------------------~~~v~~~a~~aL~~l~----~~~~~~~~~~l~~~~  370 (488)
                          +...++..+++++.+.                         .+.+.+.|.|+|+.-.    .+...+.-...-+..
T Consensus       434 aG~~V~~dv~~nll~LIa~~~~e~~~y~~~rLy~a~~~~~~~~is~e~l~qVa~W~IGEYGdlll~~~~~~~p~~vtesd  513 (866)
T KOG1062|consen  434 AGDFVNDDVVNNLLRLIANAFQELHEYAVLRLYLALSEDTLLDISQEPLLQVASWCIGEYGDLLLDGANEEEPIKVTESD  513 (866)
T ss_pred             cccccchhhHHHHHHHHhcCCcchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhhhhhHHhhcCccccCCCcCCHHH
Confidence                1233566666666554                         1233455666665432    111111111222345


Q ss_pred             ChHHHHhhcCC--CCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHH
Q 011328          371 CIKPLCDLLNC--PDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVK  446 (488)
Q Consensus       371 ~i~~L~~ll~~--~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~~~~~v~~~a~~  446 (488)
                      ++..|.+++..  .+..++..++.++.++.......            .+.+     -+.+..+-.+-+.+++++|..
T Consensus       514 ivd~l~~v~~~~~s~~~tk~yal~Al~KLSsr~~s~------------~~ri-----~~lI~~~~~s~~~elQQRa~E  574 (866)
T KOG1062|consen  514 IVDKLEKVLMSHSSDSTTKGYALTALLKLSSRFHSS------------SERI-----KQLISSYKSSLDTELQQRAVE  574 (866)
T ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHHHHHhhcccc------------HHHH-----HHHHHHhcccccHHHHHHHHH
Confidence            67777777663  45778888888888886554421            1111     123445556677888877665

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.12  E-value=1.8e-08  Score=90.66  Aligned_cols=189  Identities=20%  Similarity=0.227  Sum_probs=158.6

Q ss_pred             CChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHH
Q 011328          212 NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLD  291 (488)
Q Consensus       212 ~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~  291 (488)
                      .+.+-+..++.-|..++.+-+. ...++..|++..++..+++.+..+|..|+++|+..+..++.....+++.++++.|+.
T Consensus        95 ~~le~ke~ald~Le~lve~iDn-Andl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~  173 (342)
T KOG2160|consen   95 VDLEDKEDALDNLEELVEDIDN-ANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLK  173 (342)
T ss_pred             CCHHHHHHHHHHHHHHHHhhhh-HHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHH
Confidence            3566778888888888876654 456888899999999999999999999999999999999999999999999999999


Q ss_pred             HhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC--ChhHHHHHHHHHHHhccCCCHHHHHHHHHC
Q 011328          292 LLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA--EFEIKKEAAWAISNATSGGSNEQIKFLVSQ  369 (488)
Q Consensus       292 lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~  369 (488)
                      ++.+..+..+|..|+++++.+.++++.....+...+....|...++++  +..++..++..+..++.... .....+...
T Consensus       174 ~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~-s~~d~~~~~  252 (342)
T KOG2160|consen  174 ILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDK-SDEDIASSL  252 (342)
T ss_pred             HHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhh-hhhhHHHHh
Confidence            999876788999999999999998888888888888899999999994  67788999999999987542 333355556


Q ss_pred             CChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhh
Q 011328          370 GCIKPLCDLLNCPDPRIVTVCLEGLENILKAGE  402 (488)
Q Consensus       370 ~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~~  402 (488)
                      +....+..+....+.++.+.++.++..++....
T Consensus       253 ~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~~  285 (342)
T KOG2160|consen  253 GFQRVLENLISSLDFEVNEAALTALLSLLSELS  285 (342)
T ss_pred             hhhHHHHHHhhccchhhhHHHHHHHHHHHHHHh
Confidence            777788888888888888888888777665433

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.12  E-value=3.9e-09  Score=94.84  Aligned_cols=184  Identities=18%  Similarity=0.212  Sum_probs=153.5

Q ss_pred             ChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHH
Q 011328           87 FPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQ  166 (488)
Q Consensus        87 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~l  166 (488)
                      +.+-++.|+.-|..++. +-++...+...|++..++.++++.+..+|+.|+++++..+.++|..+..+++.++++.|+..
T Consensus        96 ~le~ke~ald~Le~lve-~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~  174 (342)
T KOG2160|consen   96 DLEDKEDALDNLEELVE-DIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKI  174 (342)
T ss_pred             CHHHHHHHHHHHHHHHH-hhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHH
Confidence            37889999999999998 78889999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcccccHhHHHHHHHHHHHhhcCC-CCCChhhhhchHHHHHHhhcc--CChhHHHHHHHHHHHhccCCchhHHHHHHhCC
Q 011328          167 FNEHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIHS--NDDEVLTDACWALSYLSDGTNDKIQAVIEAGV  243 (488)
Q Consensus       167 l~~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~~~l~~ll~~--~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~  243 (488)
                      +..+.+..++..|+.+++.+.++. +........++...|...+.+  .+...+..++..+..+..........+...+.
T Consensus       175 ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f  254 (342)
T KOG2160|consen  175 LSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGF  254 (342)
T ss_pred             HccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhh
Confidence            977777888999999999999988 444444455679999999998  56788889999999998765544443444455


Q ss_pred             HHHHHHhcCCCCcchHhHHHHHHhHhhc
Q 011328          244 CPRLVELLRHPSPSVLIPALRTVGNIVT  271 (488)
Q Consensus       244 l~~L~~lL~~~~~~v~~~a~~~L~~l~~  271 (488)
                      ...+..+....+.++.+.++.++..+..
T Consensus       255 ~~~~~~l~~~l~~~~~e~~l~~~l~~l~  282 (342)
T KOG2160|consen  255 QRVLENLISSLDFEVNEAALTALLSLLS  282 (342)
T ss_pred             hHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence            5556666666777888888877766654

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=99.11  E-value=2e-09  Score=100.30  Aligned_cols=226  Identities=18%  Similarity=0.266  Sum_probs=159.9

Q ss_pred             HHHHHHhhC--CCCHHHHHHHHHHHhhhhCCCchhHHHHHh------cCChHHHHHHhcccccHhHHHHHHHHHHHhhcC
Q 011328          118 VPIFVRLLS--SPTDDVREQAVWALGNVAGDSPKCRDLVLS------NGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG  189 (488)
Q Consensus       118 i~~L~~~L~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~------~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~  189 (488)
                      ...++.+|+  +.++++....+..+..+..+.+...+.+..      .....++++++ ..+|..+...++..+..+...
T Consensus        57 ~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll-~~~D~~i~~~a~~iLt~Ll~~  135 (312)
T PF03224_consen   57 ASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLL-DRNDSFIQLKAAFILTSLLSQ  135 (312)
T ss_dssp             -----HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH--S-SSHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHh-cCCCHHHHHHHHHHHHHHHHc
Confidence            444555554  368999999999999999888876666554      22578888877 667999999999999999988


Q ss_pred             CCCCChhhhhchHHHHHHhhcc----CChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhc-----CC--CCcch
Q 011328          190 KPQPLFEQTRPALPALERLIHS----NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL-----RH--PSPSV  258 (488)
Q Consensus       190 ~~~~~~~~~~~~~~~l~~ll~~----~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL-----~~--~~~~v  258 (488)
                      .+........+.++.++..+.+    ++.+++..++.++.++..... ....+.+.++++.+.+++     .+  ...++
T Consensus       136 ~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~-~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql  214 (312)
T PF03224_consen  136 GPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKE-YRQVFWKSNGVSPLFDILRKQATNSNSSGIQL  214 (312)
T ss_dssp             TTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHH-HHHHHHTHHHHHHHHHHHH---------HHHH
T ss_pred             CCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcch-hHHHHHhcCcHHHHHHHHHhhcccCCCCchhH
Confidence            7655555445667777777664    456778999999999987654 557788889999999999     22  34678


Q ss_pred             HhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCH-HHHHHHHHcCChHHHHHHHh
Q 011328          259 LIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNV-NQIQAIIEAGIIGPLVNLLL  337 (488)
Q Consensus       259 ~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~-~~~~~l~~~~~l~~L~~ll~  337 (488)
                      +..++.+++.++. ++.....+.+.++++.+.++++....+++-+-++.++.|+..... .....++..|+++.+-.+..
T Consensus       215 ~Y~~ll~lWlLSF-~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~  293 (312)
T PF03224_consen  215 QYQALLCLWLLSF-EPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSE  293 (312)
T ss_dssp             HHHHHHHHHHHTT-SHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHS
T ss_pred             HHHHHHHHHHHhc-CHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhc
Confidence            8899999999987 555667777788999999999887788999999999999998544 37777888777776666555


Q ss_pred             cC--ChhHHHH
Q 011328          338 NA--EFEIKKE  346 (488)
Q Consensus       338 ~~--~~~v~~~  346 (488)
                      .+  |+++...
T Consensus       294 rk~~Dedl~ed  304 (312)
T PF03224_consen  294 RKWSDEDLTED  304 (312)
T ss_dssp             S--SSHHHHHH
T ss_pred             CCCCCHHHHHH
Confidence            44  7776544

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=99.09  E-value=4e-09  Score=99.98  Aligned_cols=401  Identities=13%  Similarity=0.110  Sum_probs=236.0

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHH
Q 011328           32 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRV  111 (488)
Q Consensus        32 i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~  111 (488)
                      +..+++.++.+.+..+..++.....+.+.-.....++-.++..+..++..++..+. .+. -.+.+++.+.. +-+.|-.
T Consensus       523 ~~kil~~~~De~ep~r~m~a~~vsri~~~lg~~~~dErleerl~d~il~Afqeq~~-t~~-~il~~f~tv~v-sl~~r~k  599 (975)
T COG5181         523 SRKILEYYSDEPEPYRKMNAGLVSRIFSRLGRLGFDERLEERLYDSILNAFQEQDT-TVG-LILPCFSTVLV-SLEFRGK  599 (975)
T ss_pred             HHHHHhhccCCcchhhhhhhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhccc-ccc-EEEecccceee-ehhhccC
Confidence            44455555555555666666655555443322223333334445555555554441 111 11122222222 1222222


Q ss_pred             HHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchh--HHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcC
Q 011328          112 VIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC--RDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG  189 (488)
Q Consensus       112 ~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~--~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~  189 (488)
                      -.-.-++..++..|+++.+.+|..|+...+.++..-..|  .+.+...|.  .|.+.+ ....+++.-..+.+++.+...
T Consensus       600 p~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~--iLyE~l-ge~ypEvLgsil~Ai~~I~sv  676 (975)
T COG5181         600 PHLSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGN--ILYENL-GEDYPEVLGSILKAICSIYSV  676 (975)
T ss_pred             cchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhH--HHHHhc-CcccHHHHHHHHHHHHHHhhh
Confidence            122235778888999999999999999998886322111  122222222  345555 667888888888888887655


Q ss_pred             CCCC-ChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhH
Q 011328          190 KPQP-LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN  268 (488)
Q Consensus       190 ~~~~-~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~  268 (488)
                      .... -..-..+++|.+..+|++...++....+..++.++...++....---..+.--|++.|.+-+.++|+.|..+++.
T Consensus       677 ~~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~  756 (975)
T COG5181         677 HRFRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGC  756 (975)
T ss_pred             hcccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhh
Confidence            4222 222457899999999999999999999999999998777543321112334456777888888999999999999


Q ss_pred             hhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHH
Q 011328          269 IVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAA  348 (488)
Q Consensus       269 l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~  348 (488)
                      ++..-.       ...++..|++-|+.. +...|.-...+++-.+..+.       -..++|.|+.=...++..|+.-.+
T Consensus       757 Is~aiG-------PqdvL~~LlnnLkvq-eRq~RvctsvaI~iVae~cg-------pfsVlP~lm~dY~TPe~nVQnGvL  821 (975)
T COG5181         757 ISRAIG-------PQDVLDILLNNLKVQ-ERQQRVCTSVAISIVAEYCG-------PFSVLPTLMSDYETPEANVQNGVL  821 (975)
T ss_pred             HHhhcC-------HHHHHHHHHhcchHH-HHHhhhhhhhhhhhhHhhcC-------chhhHHHHHhcccCchhHHHHhHH
Confidence            886322       224556666666655 44444444444444443111       123788888888888899999999


Q ss_pred             HHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhh------------------------h
Q 011328          349 WAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEA------------------------E  404 (488)
Q Consensus       349 ~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~------------------------~  404 (488)
                      .+++.+..........++..  ..+.|.+.+.+.|+.-+..+...+..+.-...-                        .
T Consensus       822 kam~fmFeyig~~s~dYvy~--itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gtg~eda~IHLlNllwpNIle~sPhv  899 (975)
T COG5181         822 KAMCFMFEYIGQASLDYVYS--ITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGTGDEDAAIHLLNLLWPNILEPSPHV  899 (975)
T ss_pred             HHHHHHHHHHHHHHHHHHHH--hhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhhhhccCCCcHH
Confidence            99999986554444444433  566677777777776666666666655322110                        0


Q ss_pred             hccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCC
Q 011328          405 KNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVEED  456 (488)
Q Consensus       405 ~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~~  456 (488)
                      ... ..++...+...+...-.+..+++=+=|++..|+.+....++..+-.+.
T Consensus       900 i~~-~~Eg~e~~~~~lg~g~~m~Yv~qGLFHPs~~VRk~ywtvyn~myv~~~  950 (975)
T COG5181         900 IQS-FDEGMESFATVLGSGAMMKYVQQGLFHPSSTVRKRYWTVYNIMYVFDS  950 (975)
T ss_pred             HHH-HHHHHHHHHHHhccHHHHHHHHHhccCchHHHHHHHHHHHhhhhhccc
Confidence            000 000000111222211124555555678888898888888877765543

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.06  E-value=1.7e-07  Score=91.95  Aligned_cols=366  Identities=13%  Similarity=0.123  Sum_probs=220.1

Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHH
Q 011328           34 AMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVI  113 (488)
Q Consensus        34 ~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~  113 (488)
                      .+.+.|++++.-++-.|+.+|.++.+.+   ..     ..+.|.+.++|++.+ +.+|..|+.|...+....|+..+.+ 
T Consensus       111 slknDL~s~nq~vVglAL~alg~i~s~E---ma-----rdlapeVe~Ll~~~~-~~irKKA~Lca~r~irK~P~l~e~f-  180 (866)
T KOG1062|consen  111 SLKNDLNSSNQYVVGLALCALGNICSPE---MA-----RDLAPEVERLLQHRD-PYIRKKAALCAVRFIRKVPDLVEHF-  180 (866)
T ss_pred             HHHhhccCCCeeehHHHHHHhhccCCHH---Hh-----HHhhHHHHHHHhCCC-HHHHHHHHHHHHHHHHcCchHHHHh-
Confidence            3455556677777777777777765532   12     245677777888877 7888888888888777666655543 


Q ss_pred             hCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcc--------------cccHhHHHHH
Q 011328          114 DHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE--------------HAKLSMLRNA  179 (488)
Q Consensus       114 ~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~--------------~~~~~v~~~a  179 (488)
                          ++...++|.+.+..+....+..+..+|..+++.-..+.+  .++.++..|++              -++|-++..+
T Consensus       181 ----~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~i  254 (866)
T KOG1062|consen  181 ----VIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRI  254 (866)
T ss_pred             ----hHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHH
Confidence                466666777666667667777777777665543333332  44455555421              1356667777


Q ss_pred             HHHHHHhhcCCCCCChhhhhchHHHHHHhhccC---ChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCc
Q 011328          180 TWTLSNFCRGKPQPLFEQTRPALPALERLIHSN---DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSP  256 (488)
Q Consensus       180 ~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~---~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~  256 (488)
                      ++.|.-+.++++. ....+..++..+..-..+.   -..+...+..++..+-.+++-+   +   -++..|-++|.+.+.
T Consensus       255 LrlLriLGq~d~d-aSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~Lr---v---lainiLgkFL~n~d~  327 (866)
T KOG1062|consen  255 LRLLRILGQNDAD-ASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLR---V---LAINILGKFLLNRDN  327 (866)
T ss_pred             HHHHHHhcCCCcc-HHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHH---H---HHHHHHHHHhcCCcc
Confidence            7777766665421 1122222222222111111   1345555666665554433211   1   234556666777777


Q ss_pred             chHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHH
Q 011328          257 SVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLL  336 (488)
Q Consensus       257 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll  336 (488)
                      .+|.-|+..|.......+...+.     --..+++.|+++ +..+|+.|+-.+..+...  .++..     ++..|+.+|
T Consensus       328 NirYvaLn~L~r~V~~d~~avqr-----Hr~tIleCL~Dp-D~SIkrralELs~~lvn~--~Nv~~-----mv~eLl~fL  394 (866)
T KOG1062|consen  328 NIRYVALNMLLRVVQQDPTAVQR-----HRSTILECLKDP-DVSIKRRALELSYALVNE--SNVRV-----MVKELLEFL  394 (866)
T ss_pred             ceeeeehhhHHhhhcCCcHHHHH-----HHHHHHHHhcCC-cHHHHHHHHHHHHHHhcc--ccHHH-----HHHHHHHHH
Confidence            77777777777777655544332     234688899999 999999999998888754  23332     456688899


Q ss_pred             hcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhh-hhhhccCCCCccch
Q 011328          337 LNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAG-EAEKNMGNTGGVNL  415 (488)
Q Consensus       337 ~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~-~~~~~~~~~~~~~~  415 (488)
                      ...+++++..++.-+..++..-.++.+-+      ++.+.+.++.....+...+...+..++..+ ...+..       .
T Consensus       395 ~~~d~~~k~~~as~I~~laEkfaP~k~W~------idtml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~y-------~  461 (866)
T KOG1062|consen  395 ESSDEDFKADIASKIAELAEKFAPDKRWH------IDTMLKVLKTAGDFVNDDVVNNLLRLIANAFQELHEY-------A  461 (866)
T ss_pred             HhccHHHHHHHHHHHHHHHHhcCCcchhH------HHHHHHHHHhcccccchhhHHHHHHHHhcCCcchhhH-------H
Confidence            99899999999999999987766655444      667777777666666666665555665444 221110       0


Q ss_pred             HHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 011328          416 FAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYW  452 (488)
Q Consensus       416 ~~~~l~~~g~~~~L~~l~~~~~~~v~~~a~~~l~~~~  452 (488)
                      +.+.....    ....++.-+.+.+.+-|.|++..|=
T Consensus       462 ~~rLy~a~----~~~~~~~is~e~l~qVa~W~IGEYG  494 (866)
T KOG1062|consen  462 VLRLYLAL----SEDTLLDISQEPLLQVASWCIGEYG  494 (866)
T ss_pred             HHHHHHHH----hhhhhhhhhhhhHHHHHHHHhhhhh
Confidence            11111100    0111233445566888999998775

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.05  E-value=7.7e-07  Score=87.25  Aligned_cols=323  Identities=18%  Similarity=0.208  Sum_probs=238.2

Q ss_pred             ccHHHHHHHhcC-CCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCC-CChhHHHHHHHHHHHhcCCCc-
Q 011328           30 ESLPAMVAGVWS-DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRD-DFPQLQFEAAWALTNIASGTS-  106 (488)
Q Consensus        30 ~~i~~l~~~L~s-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~~v~~~a~~~L~~l~~~~~-  106 (488)
                      +.|+.|+..+.+ .=.+=|..|++.|..+...     .+..+-.-+++.|++.|+.+ .++++...++..+.++....+ 
T Consensus        22 ETI~kLcDRvessTL~eDRR~A~rgLKa~srk-----YR~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~   96 (970)
T KOG0946|consen   22 ETIEKLCDRVESSTLLEDRRDAVRGLKAFSRK-----YREEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDS   96 (970)
T ss_pred             hHHHHHHHHHhhccchhhHHHHHHHHHHHHHH-----HHHHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcc
Confidence            678899999875 4467788999999997643     33444556788999999754 348899999999999887432 


Q ss_pred             -----h----------hhHHHH-hCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCC-chhHHHHHh-cCChHHHHHHhc
Q 011328          107 -----E----------NTRVVI-DHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDS-PKCRDLVLS-NGALMPLLAQFN  168 (488)
Q Consensus       107 -----~----------~~~~~~-~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~-~~~l~~L~~ll~  168 (488)
                           +          ..+.++ ..+.|..++.+++..+-.+|..++..+.++.... ++.++.+.. ..++..++.+| 
T Consensus        97 ~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL-  175 (970)
T KOG0946|consen   97 PEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLL-  175 (970)
T ss_pred             hhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHH-
Confidence                 1          122333 5588999999999999999999999999987544 455665544 45799999999 


Q ss_pred             ccccHhHHHHHHHHHHHhhcCCCCCC-hhhhhchHHHHHHhhccC---C-hhHHHHHHHHHHHhccCCchhHHHHHHhCC
Q 011328          169 EHAKLSMLRNATWTLSNFCRGKPQPL-FEQTRPALPALERLIHSN---D-DEVLTDACWALSYLSDGTNDKIQAVIEAGV  243 (488)
Q Consensus       169 ~~~~~~v~~~a~~~L~~l~~~~~~~~-~~~~~~~~~~l~~ll~~~---~-~~v~~~al~~L~~l~~~~~~~~~~~~~~~~  243 (488)
                      .++-+.+|..++..|..+.++.+... .....+++..|..++...   | .-|...++..+.|+..++......+.+.+.
T Consensus       176 ~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~  255 (970)
T KOG0946|consen  176 RDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSY  255 (970)
T ss_pred             hhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhcccc
Confidence            77788899999999999999885444 445588999999999853   3 468899999999999888777788888899


Q ss_pred             HHHHHHhcCC---CC-----cch-----HhHHHHHHhHhhcCC-c-----hhhHHHhhCCChHHHHHHhccc-chhhHHH
Q 011328          244 CPRLVELLRH---PS-----PSV-----LIPALRTVGNIVTGD-D-----MQTQCIINHQALPCLLDLLTQN-YKKSIKK  303 (488)
Q Consensus       244 l~~L~~lL~~---~~-----~~v-----~~~a~~~L~~l~~~~-~-----~~~~~~~~~~~~~~L~~lL~~~-~~~~v~~  303 (488)
                      ++.|.++|.-   .+     +..     ...++.++..+..-. .     .+.+.+...+++..|..++-++ -..+++.
T Consensus       256 i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIlt  335 (970)
T KOG0946|consen  256 IPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILT  335 (970)
T ss_pred             HHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHH
Confidence            9999988753   22     111     123555666655421 1     2234566888999999988776 4678999


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHcC----------ChHHHHHHHhcC-ChhHHHHHHHHHHHhccCC
Q 011328          304 EACWTISNITAGNVNQIQAIIEAG----------IIGPLVNLLLNA-EFEIKKEAAWAISNATSGG  358 (488)
Q Consensus       304 ~a~~~L~nl~~~~~~~~~~l~~~~----------~l~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~  358 (488)
                      .+..++++..+++..+...+.+..          ++-.++.+..+. .+..|..+.+++..+....
T Consensus       336 esiitvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN  401 (970)
T KOG0946|consen  336 ESIITVAEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDN  401 (970)
T ss_pred             HHHHHHHHHHHhchHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhcc
Confidence            999999999998887777776421          223344444444 5678888889988887654

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=99.05  E-value=6.7e-07  Score=90.07  Aligned_cols=331  Identities=16%  Similarity=0.171  Sum_probs=229.9

Q ss_pred             HHHHHHHHHHHHHhccCCCccH----HHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHH
Q 011328           45 NIQLDATTQFRKLLSIERSPPI----NEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPI  120 (488)
Q Consensus        45 ~~~~~a~~~L~~l~~~~~~~~~----~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~  120 (488)
                      .-...++.+|.++++.. ++..    .+..--|.++.+..++.....+.++.-|+.++..+.. +.++...+++.|.+..
T Consensus      1740 ~~v~m~LtAL~Nli~~n-PdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Ta-n~~Cv~~~a~~~vL~~ 1817 (2235)
T KOG1789|consen 1740 TKVLMTLTALANLVSAN-PDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATA-NKECVTDLATCNVLTT 1817 (2235)
T ss_pred             HHHHHHHHHHHHHHhhC-cchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhc-ccHHHHHHHhhhHHHH
Confidence            34567899999998875 4332    2223347888888888766548899999999988887 8899999999999999


Q ss_pred             HHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCC---CCCChhh
Q 011328          121 FVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK---PQPLFEQ  197 (488)
Q Consensus       121 L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~---~~~~~~~  197 (488)
                      |+.+|++ -|..|+.++.+|+.+++... ......+.|++..+..++..+++++.+..++..+..+..+.   |...+..
T Consensus      1818 LL~lLHS-~PS~R~~vL~vLYAL~S~~~-i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL 1895 (2235)
T KOG1789|consen 1818 LLTLLHS-QPSMRARVLDVLYALSSNGQ-IGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITL 1895 (2235)
T ss_pred             HHHHHhc-ChHHHHHHHHHHHHHhcCcH-HHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeeh
Confidence            9999976 57889999999999987655 56667788999999999888889999999999999998876   3333333


Q ss_pred             hhchHH-----------HHHHhhcc--CChh------HHHHHHHHHHHhcc--------CC------chh----------
Q 011328          198 TRPALP-----------ALERLIHS--NDDE------VLTDACWALSYLSD--------GT------NDK----------  234 (488)
Q Consensus       198 ~~~~~~-----------~l~~ll~~--~~~~------v~~~al~~L~~l~~--------~~------~~~----------  234 (488)
                      +.-.-.           ..++.+..  ++++      .+...-..+..+..        ++      +++          
T Consensus      1896 ~kFLP~~f~d~~RD~PEAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E 1975 (2235)
T KOG1789|consen 1896 IKFLPEIFADSLRDSPEAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKE 1975 (2235)
T ss_pred             HHhchHHHHHHHhcCHHHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccC
Confidence            222222           33333432  2222      12222222222221        00      000          


Q ss_pred             --------HHHH------------HHhCCHHHHHHhcCCCCcc--hHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHH
Q 011328          235 --------IQAV------------IEAGVCPRLVELLRHPSPS--VLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDL  292 (488)
Q Consensus       235 --------~~~~------------~~~~~l~~L~~lL~~~~~~--v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~l  292 (488)
                              ...+            +-.++++.+.+++..+.++  .-..-..++..+.+..+....++-..|.+|.++..
T Consensus      1976 ~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~A 2055 (2235)
T KOG1789|consen 1976 CAVGGSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTA 2055 (2235)
T ss_pred             cccchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHH
Confidence                    0000            0113566666677654432  22333344555666677777777788999999999


Q ss_pred             hcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCCh
Q 011328          293 LTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCI  372 (488)
Q Consensus       293 L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i  372 (488)
                      +... +..+-..|.++|..++.+ .-..+.+.....+..++..+... .....-|+.+|..+......+...+....|++
T Consensus      2056 m~~~-n~s~P~SaiRVlH~Lsen-~~C~~AMA~l~~i~~~m~~mkK~-~~~~GLA~EalkR~~~r~~~eLVAQ~LK~gLv 2132 (2235)
T KOG1789|consen 2056 MCLQ-NTSAPRSAIRVLHELSEN-QFCCDAMAQLPCIDGIMKSMKKQ-PSLMGLAAEALKRLMKRNTGELVAQMLKCGLV 2132 (2235)
T ss_pred             HHhc-CCcCcHHHHHHHHHHhhc-cHHHHHHhccccchhhHHHHHhc-chHHHHHHHHHHHHHHHhHHHHHHHHhccCcH
Confidence            9877 667778999999999875 56666777666777777777664 34556899999999887666777777888999


Q ss_pred             HHHHhhcCCC
Q 011328          373 KPLCDLLNCP  382 (488)
Q Consensus       373 ~~L~~ll~~~  382 (488)
                      +.|..+|+..
T Consensus      2133 pyLL~LLd~~ 2142 (2235)
T KOG1789|consen 2133 PYLLQLLDSS 2142 (2235)
T ss_pred             HHHHHHhccc
Confidence            9999999853

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=99.04  E-value=9.9e-09  Score=95.67  Aligned_cols=227  Identities=14%  Similarity=0.188  Sum_probs=162.9

Q ss_pred             hHHHHHHhccc-ccHhHHHHHHHHHHHhhcCCCCCChhhh-------hchHHHHHHhhccCChhHHHHHHHHHHHhccCC
Q 011328          160 LMPLLAQFNEH-AKLSMLRNATWTLSNFCRGKPQPLFEQT-------RPALPALERLIHSNDDEVLTDACWALSYLSDGT  231 (488)
Q Consensus       160 l~~L~~ll~~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~-------~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~  231 (488)
                      ...++.++... ++.++..+++..+..+....+.......       ......+++++.++|..+...++..+..+....
T Consensus        57 ~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~  136 (312)
T PF03224_consen   57 ASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQG  136 (312)
T ss_dssp             -----HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTST
T ss_pred             HHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcC
Confidence            45566666555 7888999999999999888764433322       125667778888999999999999999999776


Q ss_pred             chhHHHHHHhCCHHHHHHhcCC----CCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHh------cccchhhH
Q 011328          232 NDKIQAVIEAGVCPRLVELLRH----PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLL------TQNYKKSI  301 (488)
Q Consensus       232 ~~~~~~~~~~~~l~~L~~lL~~----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL------~~~~~~~v  301 (488)
                      +....... .+.++.+++.+.+    ++.+++..++.++.++.. .+..+..+.+.++++.+.+++      .+.....+
T Consensus       137 ~~~~~~~~-~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~-~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql  214 (312)
T PF03224_consen  137 PKRSEKLV-KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLR-SKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQL  214 (312)
T ss_dssp             TT--HHHH-HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHT-SHHHHHHHHTHHHHHHHHHHHH---------HHHH
T ss_pred             CccccchH-HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhC-cchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhH
Confidence            65544322 3556666666654    445677899999999987 666778888999999999999      45547889


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC-ChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcC
Q 011328          302 KKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA-EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLN  380 (488)
Q Consensus       302 ~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~  380 (488)
                      +.+++.+++-++.. ++....+.+.++++.|.++++.. ..+|.+-++.++.|++..........++..|+++.+..+..
T Consensus       215 ~Y~~ll~lWlLSF~-~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~  293 (312)
T PF03224_consen  215 QYQALLCLWLLSFE-PEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSE  293 (312)
T ss_dssp             HHHHHHHHHHHTTS-HHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHS
T ss_pred             HHHHHHHHHHHhcC-HHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhc
Confidence            99999999999876 77888888888999999999876 77899999999999998876558888888888888877766


Q ss_pred             --CCCHHHHHH
Q 011328          381 --CPDPRIVTV  389 (488)
Q Consensus       381 --~~~~~v~~~  389 (488)
                        .+|+++.+.
T Consensus       294 rk~~Dedl~ed  304 (312)
T PF03224_consen  294 RKWSDEDLTED  304 (312)
T ss_dssp             S--SSHHHHHH
T ss_pred             CCCCCHHHHHH
Confidence              367777654

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.03  E-value=2e-07  Score=90.30  Aligned_cols=220  Identities=15%  Similarity=0.172  Sum_probs=159.4

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh
Q 011328           30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT  109 (488)
Q Consensus        30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~  109 (488)
                      +.-+.++.+|.+.-+-+|..|+..+.++.-.- ++..+     ..+|.|++-|.++| +.|+-.|+.+++.++..+|.+.
T Consensus       144 DLa~Dv~tLL~sskpYvRKkAIl~lykvFLkY-PeAlr-----~~FprL~EkLeDpD-p~V~SAAV~VICELArKnPkny  216 (877)
T KOG1059|consen  144 DLADDVFTLLNSSKPYVRKKAILLLYKVFLKY-PEALR-----PCFPRLVEKLEDPD-PSVVSAAVSVICELARKNPQNY  216 (877)
T ss_pred             HHHHHHHHHHhcCchHHHHHHHHHHHHHHHhh-hHhHh-----hhHHHHHHhccCCC-chHHHHHHHHHHHHHhhCCccc
Confidence            44557888899999999999999888876443 22222     46899999999999 9999999999999999777765


Q ss_pred             HHHHhCCCHHHHHHhhCC-CCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhc
Q 011328          110 RVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR  188 (488)
Q Consensus       110 ~~~~~~g~i~~L~~~L~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~  188 (488)
                      -.+     -|.+.++|.. .+.=+.-..+..+++|+--.|...+.     .++++.+++....-.++...++.++.....
T Consensus       217 L~L-----AP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKK-----Lieplt~li~sT~AmSLlYECvNTVVa~s~  286 (877)
T KOG1059|consen  217 LQL-----APLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKK-----LIEPITELMESTVAMSLLYECVNTVVAVSM  286 (877)
T ss_pred             ccc-----cHHHHHHHhccCCCeehHHHHHHHhhccccCchhhhh-----hhhHHHHHHHhhHHHHHHHHHHHHheeehh
Confidence            433     4778887765 33334445677888888766654443     577889888444444555555555543322


Q ss_pred             CCC-CCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHh
Q 011328          189 GKP-QPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVG  267 (488)
Q Consensus       189 ~~~-~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~  267 (488)
                      ... ........-++..|-.++.+.|+.++.-.+.+++.+....+...+     ..-+.++++|.+.++.+|..|+..+.
T Consensus       287 s~g~~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vq-----a~kdlIlrcL~DkD~SIRlrALdLl~  361 (877)
T KOG1059|consen  287 SSGMSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQ-----AHKDLILRCLDDKDESIRLRALDLLY  361 (877)
T ss_pred             ccCCCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHH-----HhHHHHHHHhccCCchhHHHHHHHHH
Confidence            221 133344456777888888899999999999999999977665444     33477899999999999999999998


Q ss_pred             Hhhc
Q 011328          268 NIVT  271 (488)
Q Consensus       268 ~l~~  271 (488)
                      .+..
T Consensus       362 gmVs  365 (877)
T KOG1059|consen  362 GMVS  365 (877)
T ss_pred             HHhh
Confidence            8875

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.03  E-value=5.1e-08  Score=95.56  Aligned_cols=382  Identities=16%  Similarity=0.188  Sum_probs=257.2

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh
Q 011328           30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT  109 (488)
Q Consensus        30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~  109 (488)
                      +.+|.+++++...|-+.+...--.+.+.+... ++     ...+++..+++=..+++ +.+|..|++.++.+-.  +...
T Consensus        49 slF~dvvk~~~T~dlelKKlvyLYl~nYa~~~-P~-----~a~~avnt~~kD~~d~n-p~iR~lAlrtm~~l~v--~~i~  119 (734)
T KOG1061|consen   49 SLFPDVVKCMQTRDLELKKLVYLYLMNYAKGK-PD-----LAILAVNTFLKDCEDPN-PLIRALALRTMGCLRV--DKIT  119 (734)
T ss_pred             hhhHHHHhhcccCCchHHHHHHHHHHHhhccC-ch-----HHHhhhhhhhccCCCCC-HHHHHHHhhceeeEee--hHHH
Confidence            45677888888888777777777777766654 11     12356777777778888 8999998888877754  2222


Q ss_pred             HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcC
Q 011328          110 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG  189 (488)
Q Consensus       110 ~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~  189 (488)
                      .     .+...+.+.+++.++.+|..+..+..++-..++   +.....|.+..|-.++ .++++.|..+|+.+|..+...
T Consensus       120 e-----y~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~---~~~~~~gl~~~L~~ll-~D~~p~VVAnAlaaL~eI~e~  190 (734)
T KOG1061|consen  120 E-----YLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDP---DLVEDSGLVDALKDLL-SDSNPMVVANALAALSEIHES  190 (734)
T ss_pred             H-----HHHHHHHHhccCCChhHHHHHHHHHHHhhcCCh---hhccccchhHHHHHHh-cCCCchHHHHHHHHHHHHHHh
Confidence            2     246888999999999999999999999876654   4667778888888888 688999999999999999987


Q ss_pred             CCC-CChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhH
Q 011328          190 KPQ-PLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN  268 (488)
Q Consensus       190 ~~~-~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~  268 (488)
                      .+. .........+..++..+..-+..-+...+.++.+-...++....     .++..+...+.+.++.+...+...+.+
T Consensus       191 ~~~~~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~~ea~-----~i~~r~~p~Lqh~n~avvlsavKv~l~  265 (734)
T KOG1061|consen  191 HPSVNLLELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDSREAE-----DICERLTPRLQHANSAVVLSAVKVILQ  265 (734)
T ss_pred             CCCCCcccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCchhHH-----HHHHHhhhhhccCCcceEeehHHHHHH
Confidence            753 34444456667777777666666777777777766655442223     456778888888888888888888888


Q ss_pred             hhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHH-------------------------
Q 011328          269 IVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAI-------------------------  323 (488)
Q Consensus       269 l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l-------------------------  323 (488)
                      +........ ..+-..+-+.++.++.++ . +++..++.-+.-+....++....-                         
T Consensus       266 ~~~~~~~~~-~~~~~K~~~pl~tlls~~-~-e~qyvaLrNi~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~l  342 (734)
T KOG1061|consen  266 LVKYLKQVN-ELLFKKVAPPLVTLLSSE-S-EIQYVALRNINLILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIEL  342 (734)
T ss_pred             HHHHHHHHH-HHHHHHhcccceeeeccc-c-hhhHHHHhhHHHHHHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHH
Confidence            776544422 222335666677777666 3 555555554444443333321110                         


Q ss_pred             HH-c---CChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHH
Q 011328          324 IE-A---GIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILK  399 (488)
Q Consensus       324 ~~-~---~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~  399 (488)
                      .. .   .++..+...-..-|.+...++.+|+++++......       .+++..|.++++.....+...+...++.++.
T Consensus       343 a~~~nl~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~-------~~cv~~lLell~~~~~yvvqE~~vvi~dilR  415 (734)
T KOG1061|consen  343 ANDANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS-------NDCVSILLELLETKVDYVVQEAIVVIRDILR  415 (734)
T ss_pred             hhHhHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh-------hhhHHHHHHHHhhcccceeeehhHHHHhhhh
Confidence            00 0   12233333333447788899999999998754221       5789999999998888888888888888888


Q ss_pred             hhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCCCC
Q 011328          400 AGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVEEDEDEP  460 (488)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~~~~~~  460 (488)
                      ..+..           +.......     -..+-+-++|+.+....|++.+|-+.-++-++
T Consensus       416 kyP~~-----------~~~vv~~l-----~~~~~sl~epeak~amiWilg~y~~~i~~a~e  460 (734)
T KOG1061|consen  416 KYPNK-----------YESVVAIL-----CENLDSLQEPEAKAALIWILGEYAERIENALE  460 (734)
T ss_pred             cCCCc-----------hhhhhhhh-----cccccccCChHHHHHHHHHHhhhhhccCcHHH
Confidence            76643           22222111     11223335778888888888888776666444

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.00  E-value=9.1e-08  Score=93.87  Aligned_cols=300  Identities=19%  Similarity=0.175  Sum_probs=189.1

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh
Q 011328           30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT  109 (488)
Q Consensus        30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~  109 (488)
                      +.++.+++...++++.+|..|++.+..+--.       .+. .-....+.+.+++.+ +.+|..++.+..++-..+   .
T Consensus        86 ~avnt~~kD~~d~np~iR~lAlrtm~~l~v~-------~i~-ey~~~Pl~~~l~d~~-~yvRktaa~~vakl~~~~---~  153 (734)
T KOG1061|consen   86 LAVNTFLKDCEDPNPLIRALALRTMGCLRVD-------KIT-EYLCDPLLKCLKDDD-PYVRKTAAVCVAKLFDID---P  153 (734)
T ss_pred             hhhhhhhccCCCCCHHHHHHHhhceeeEeeh-------HHH-HHHHHHHHHhccCCC-hhHHHHHHHHHHHhhcCC---h
Confidence            7788888888999999998888877664221       111 235678889999999 999999999999887644   3


Q ss_pred             HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcC
Q 011328          110 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG  189 (488)
Q Consensus       110 ~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~  189 (488)
                      +.....|+++.|..++.+.++.+..+|+.+|..+...++...........+..++..+...    .-..-+..|-.++.+
T Consensus       154 ~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec----~EW~qi~IL~~l~~y  229 (734)
T KOG1061|consen  154 DLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNEC----TEWGQIFILDCLAEY  229 (734)
T ss_pred             hhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHh----hhhhHHHHHHHHHhc
Confidence            4566789999999999999999999999999999876653111222222344444444222    222233444555555


Q ss_pred             CCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHh
Q 011328          190 KPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNI  269 (488)
Q Consensus       190 ~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l  269 (488)
                      .+... .....++..+...+.+.+..+...+...+.++...-..... ..-...-+.++.++..+. +++..++.-+.-+
T Consensus       230 ~p~d~-~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~~-~~~~K~~~pl~tlls~~~-e~qyvaLrNi~li  306 (734)
T KOG1061|consen  230 VPKDS-REAEDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQVNE-LLFKKVAPPLVTLLSSES-EIQYVALRNINLI  306 (734)
T ss_pred             CCCCc-hhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHHHHH-HHHHHhcccceeeecccc-hhhHHHHhhHHHH
Confidence            44444 45567778888888888888888888888887765544222 333356677777777765 6666666666555


Q ss_pred             hcCCchhhHHHh--------------------------hCCChHHHHHHh---cccchhhHHHHHHHHHHHHhcCCHHHH
Q 011328          270 VTGDDMQTQCII--------------------------NHQALPCLLDLL---TQNYKKSIKKEACWTISNITAGNVNQI  320 (488)
Q Consensus       270 ~~~~~~~~~~~~--------------------------~~~~~~~L~~lL---~~~~~~~v~~~a~~~L~nl~~~~~~~~  320 (488)
                      ....+.....-+                          +..+-+.+-++.   ... +.+..+++.+++++++..-.+. 
T Consensus       307 l~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~~nl~qvl~El~eYatev-D~~fvrkaIraig~~aik~e~~-  384 (734)
T KOG1061|consen  307 LQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIELANDANLAQVLAELKEYATEV-DVDFVRKAVRAIGRLAIKAEQS-  384 (734)
T ss_pred             HHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhhHhHHHHHHHHHHHhhhhh-CHHHHHHHHHHhhhhhhhhhhh-
Confidence            544332111100                          111111111111   222 5667789999999998742221 


Q ss_pred             HHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhc
Q 011328          321 QAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNAT  355 (488)
Q Consensus       321 ~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~  355 (488)
                           +++++.|+.++..+-..+..++...+..+.
T Consensus       385 -----~~cv~~lLell~~~~~yvvqE~~vvi~dil  414 (734)
T KOG1061|consen  385 -----NDCVSILLELLETKVDYVVQEAIVVIRDIL  414 (734)
T ss_pred             -----hhhHHHHHHHHhhcccceeeehhHHHHhhh
Confidence                 345666666666443334444444444444

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=98.97  E-value=1.2e-07  Score=89.38  Aligned_cols=353  Identities=13%  Similarity=0.053  Sum_probs=215.5

Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHH
Q 011328           34 AMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVI  113 (488)
Q Consensus        34 ~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~  113 (488)
                      ..+..|+|..|..-..|+..+..++..+ -++.   ...|.+..++....++.....+..++.++++++... .....+-
T Consensus        98 ~al~aL~s~epr~~~~Aaql~aaIA~~E-lp~~---~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~-~Pe~li~  172 (858)
T COG5215          98 MALRALKSPEPRFCTMAAQLLAAIARME-LPNS---LWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESE-APEDLIQ  172 (858)
T ss_pred             HHHHHhcCCccHHHHHHHHHHHHHHHhh-Cccc---cchHHHHHHHHhccccCchHhHHHHHHHHHHHhhcc-CHHHHHH
Confidence            4678889999999999999999988765 1211   123555666666666654678999999999999832 2222222


Q ss_pred             -hCCCHHHHHH-hhCC-CCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChH-HHHHHhcccccHhHHHHHHHHHHHhhcC
Q 011328          114 -DHGAVPIFVR-LLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALM-PLLAQFNEHAKLSMLRNATWTLSNFCRG  189 (488)
Q Consensus       114 -~~g~i~~L~~-~L~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~-~L~~ll~~~~~~~v~~~a~~~L~~l~~~  189 (488)
                       .+.++-.++. .+++ ++..+|-.++.+|.+-+..-.+.-..-.+.+.+. ...+.- +.++.+++..+..||..+..-
T Consensus       173 ~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceat-q~~d~e~q~aafgCl~kim~L  251 (858)
T COG5215         173 MSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEAT-QGNDEELQHAAFGCLNKIMML  251 (858)
T ss_pred             HhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhc-cCCcHHHHHHHHHHHHHHHHH
Confidence             2233333433 4444 6788999999999883321111111111222222 222222 678899999999999987654


Q ss_pred             C-CCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHH-------------HH---HhCCHHHHHHhcC
Q 011328          190 K-PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQA-------------VI---EAGVCPRLVELLR  252 (488)
Q Consensus       190 ~-~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~-------------~~---~~~~l~~L~~lL~  252 (488)
                      . .........-........++++++++...+...-+.++...-+..-.             +.   -.+++|.|+++|.
T Consensus       252 yY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~  331 (858)
T COG5215         252 YYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLE  331 (858)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHH
Confidence            3 11122222334445556778999999999998887777532211000             11   1257888999985


Q ss_pred             C-------CCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHH
Q 011328          253 H-------PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIE  325 (488)
Q Consensus       253 ~-------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~  325 (488)
                      .       .++.+...|..||.-++....   ..+++ .++..+-.-++++ ++.-|..|+.+++.+..+..+....-+-
T Consensus       332 ~q~ed~~~DdWn~smaA~sCLqlfaq~~g---d~i~~-pVl~FvEqni~~~-~w~nreaavmAfGSvm~gp~~~~lT~~V  406 (858)
T COG5215         332 KQGEDYYGDDWNPSMAASSCLQLFAQLKG---DKIMR-PVLGFVEQNIRSE-SWANREAAVMAFGSVMHGPCEDCLTKIV  406 (858)
T ss_pred             hcCCCccccccchhhhHHHHHHHHHHHhh---hHhHH-HHHHHHHHhccCc-hhhhHHHHHHHhhhhhcCccHHHHHhhH
Confidence            5       235567777777766654222   12222 2555555666777 8999999999999998864444443344


Q ss_pred             cCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHh-hcC--CCCHHHHHHHHHHHHHHHHhh
Q 011328          326 AGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCD-LLN--CPDPRIVTVCLEGLENILKAG  401 (488)
Q Consensus       326 ~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~-ll~--~~~~~v~~~al~~L~~l~~~~  401 (488)
                      ...+|.+...+.++..-++..++|+++.++..-    ...+...+-+...+. ++-  .+.+.+..++.+...++...-
T Consensus       407 ~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~v----a~~i~p~~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~  481 (858)
T COG5215         407 PQALPGIENEMSDSCLWVKSTTAWCFGAIADHV----AMIISPCGHLVLEVSASLIGLMDCPFRSINCSWRKENLVDHI  481 (858)
T ss_pred             HhhhHHHHHhcccceeehhhHHHHHHHHHHHHH----HHhcCccccccHHHHHHHhhhhccchHHhhhHHHHHhHHHhh
Confidence            468999999888888889999999999998532    111111222222222 111  235566667777777776543

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=98.96  E-value=2.8e-07  Score=91.91  Aligned_cols=352  Identities=14%  Similarity=0.125  Sum_probs=226.1

Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHH
Q 011328           34 AMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVI  113 (488)
Q Consensus        34 ~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~  113 (488)
                      .|++.+.+.|-+.|+.|+.-|.+=+.+. .-..+.=-+..++..++++|.+.+ .++|..|.+|++-+++.-++.+-.- 
T Consensus         9 ~LlekmtssDKDfRfMAtsDLm~eLqkd-si~Ld~dSe~kvv~~lLklL~D~n-gEVQnlAVKClg~lvsKvke~~le~-   85 (1233)
T KOG1824|consen    9 NLLEKMTSSDKDFRFMATSDLMTELQKD-SIKLDDDSERKVVKMLLKLLEDKN-GEVQNLAVKCLGPLVSKVKEDQLET-   85 (1233)
T ss_pred             HHHHHccCCCcchhhhhHHHHHHHHHhh-hhhccccchhHHHHHHHHHHhccC-cHHHHHHHHHHHHHHhhchHHHHHH-
Confidence            6889999999999999999888777654 222222234468899999999999 9999999999999987444443322 


Q ss_pred             hCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHH----HHHhcc-cccHhHHHHHHHHHHHhhc
Q 011328          114 DHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPL----LAQFNE-HAKLSMLRNATWTLSNFCR  188 (488)
Q Consensus       114 ~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L----~~ll~~-~~~~~v~~~a~~~L~~l~~  188 (488)
                         .++.|..-+-++....|..+.-.|.....+-+..........+.+.+    ...+.. .....++..++..+.-+..
T Consensus        86 ---~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~ls  162 (1233)
T KOG1824|consen   86 ---IVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLS  162 (1233)
T ss_pred             ---HHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHH
Confidence               24556655445555555555444444332222122222222333333    333322 2333477777777766554


Q ss_pred             CCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCC-CCcchHhHHHHHHh
Q 011328          189 GKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH-PSPSVLIPALRTVG  267 (488)
Q Consensus       189 ~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-~~~~v~~~a~~~L~  267 (488)
                      .....-...-.+++..++.-+.++...++..++.+|+.++...+..   .. .+++..|.+-|.. ..+...+.-+.+|+
T Consensus       163 r~g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~---ly-~~li~~Ll~~L~~~~q~~~~rt~Iq~l~  238 (1233)
T KOG1824|consen  163 RFGTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRD---LY-VELIEHLLKGLSNRTQMSATRTYIQCLA  238 (1233)
T ss_pred             hhcccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHH---HH-HHHHHHHHhccCCCCchHHHHHHHHHHH
Confidence            4322222244566777777778888999999999999999654321   11 2556667776655 34555566677888


Q ss_pred             HhhcCCchhhHHHhhCCChHHHHHHh---cccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC-----
Q 011328          268 NIVTGDDMQTQCIINHQALPCLLDLL---TQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA-----  339 (488)
Q Consensus       268 ~l~~~~~~~~~~~~~~~~~~~L~~lL---~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~-----  339 (488)
                      .+++........- -..+++.+.+..   +.. +.++|+.++.++..+....+..+-..+. .++..+++.+..+     
T Consensus       239 ~i~r~ag~r~~~h-~~~ivp~v~~y~~~~e~~-dDELrE~~lQale~fl~rcp~ei~p~~p-ei~~l~l~yisYDPNy~y  315 (1233)
T KOG1824|consen  239 AICRQAGHRFGSH-LDKIVPLVADYCNKIEED-DDELREYCLQALESFLRRCPKEILPHVP-EIINLCLSYISYDPNYNY  315 (1233)
T ss_pred             HHHHHhcchhhcc-cchhhHHHHHHhcccccC-cHHHHHHHHHHHHHHHHhChhhhcccch-HHHHHHHHHhccCCCCCC
Confidence            8877443222211 225677777777   555 7899999999999988866665443332 1344444444210     


Q ss_pred             -----------------------------ChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHH
Q 011328          340 -----------------------------EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVC  390 (488)
Q Consensus       340 -----------------------------~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a  390 (488)
                                                   ++.||++|+.++..+.... .+....+.+ .+-+.++.-+++.++.++..+
T Consensus       316 d~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsSR-~E~L~~~~q-~l~p~lI~RfkEREEnVk~dv  393 (1233)
T KOG1824|consen  316 DTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISSR-LEMLPDFYQ-TLGPALISRFKEREENVKADV  393 (1233)
T ss_pred             CCccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhcc-HHHHHHHHH-HhCHHHHHHHHHHhhhHHHHH
Confidence                                         2579999999999998754 455555544 567788888888888888888


Q ss_pred             HHHHHHHHHh
Q 011328          391 LEGLENILKA  400 (488)
Q Consensus       391 l~~L~~l~~~  400 (488)
                      ..++..++..
T Consensus       394 f~~yi~ll~q  403 (1233)
T KOG1824|consen  394 FHAYIALLKQ  403 (1233)
T ss_pred             HHHHHHHHHc
Confidence            8887777653

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=98.94  E-value=2.4e-07  Score=87.47  Aligned_cols=361  Identities=12%  Similarity=0.077  Sum_probs=222.5

Q ss_pred             hccHHHHHHHh----cCCC-HHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcC
Q 011328           29 LESLPAMVAGV----WSDD-RNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIAS  103 (488)
Q Consensus        29 ~~~i~~l~~~L----~s~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~  103 (488)
                      .+..|-+++.+    ..+. ...+..++.++..++.+..++.....-+.-++.....-++.+.+..+|..|+.+|.+-+.
T Consensus       128 ~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~Pe~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~  207 (858)
T COG5215         128 NSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAPEDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLM  207 (858)
T ss_pred             cccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCHHHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHH
Confidence            35556555555    3443 467888999999988766432222222222333334455665557899999999887332


Q ss_pred             ------CCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHH
Q 011328          104 ------GTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLR  177 (488)
Q Consensus       104 ------~~~~~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~  177 (488)
                            ..++.|+.     ++...+..-+.++.+++..+..+|..+..-.-.+-+..++.-......+.+ ++++.++..
T Consensus       208 fv~~nf~~E~erNy-----~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~m-ks~nd~va~  281 (858)
T COG5215         208 FVQGNFCYEEERNY-----FMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFM-KSQNDEVAI  281 (858)
T ss_pred             HHHHhhcchhhhch-----hheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcchHHHH
Confidence                  01223332     345555666779999999999999998754433333444432333333444 778888988


Q ss_pred             HHHHHHHHhhcCCCCCC-----------------hhhhhchHHHHHHhhcc-------CChhHHHHHHHHHHHhccCCch
Q 011328          178 NATWTLSNFCRGKPQPL-----------------FEQTRPALPALERLIHS-------NDDEVLTDACWALSYLSDGTND  233 (488)
Q Consensus       178 ~a~~~L~~l~~~~~~~~-----------------~~~~~~~~~~l~~ll~~-------~~~~v~~~al~~L~~l~~~~~~  233 (488)
                      .++..-+.+|.......                 ......++|.++.+|..       +++.+-..|..||.-.+....+
T Consensus       282 qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd  361 (858)
T COG5215         282 QAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGD  361 (858)
T ss_pred             HHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhh
Confidence            89888877776431100                 01135688999999974       2466777777777776654432


Q ss_pred             hHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHh
Q 011328          234 KIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNIT  313 (488)
Q Consensus       234 ~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~  313 (488)
                         .+++ .++..+-+-++++++.-|+.+..+++.+..+.......-+-...+|.+...+.++ .-.++..++|+++.++
T Consensus       362 ---~i~~-pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~-~l~vk~ttAwc~g~ia  436 (858)
T COG5215         362 ---KIMR-PVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDS-CLWVKSTTAWCFGAIA  436 (858)
T ss_pred             ---HhHH-HHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccc-eeehhhHHHHHHHHHH
Confidence               2444 3556666678888999999999999999987665544444557888888888877 8889999999999998


Q ss_pred             cCCHHHHHHHHHcCChHHHHHHHhc---CChhHHHHHHHHHHHhccCCCHHH--HHHHHHCCChHHHHhhcC-----CCC
Q 011328          314 AGNVNQIQAIIEAGIIGPLVNLLLN---AEFEIKKEAAWAISNATSGGSNEQ--IKFLVSQGCIKPLCDLLN-----CPD  383 (488)
Q Consensus       314 ~~~~~~~~~l~~~~~l~~L~~ll~~---~~~~v~~~a~~aL~~l~~~~~~~~--~~~l~~~~~i~~L~~ll~-----~~~  383 (488)
                      .+-+..+.   ..|-++..++....   +.+.+..++.|...|++.+-.+..  ...+..+-....+-.+++     ..+
T Consensus       437 d~va~~i~---p~~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne  513 (858)
T COG5215         437 DHVAMIIS---PCGHLVLEVSASLIGLMDCPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNE  513 (858)
T ss_pred             HHHHHhcC---ccccccHHHHHHHhhhhccchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccc
Confidence            64232221   22333333332222   256778899999999986542211  011111111112222222     334


Q ss_pred             HHHHHHHHHHHHHHHHhhhh
Q 011328          384 PRIVTVCLEGLENILKAGEA  403 (488)
Q Consensus       384 ~~v~~~al~~L~~l~~~~~~  403 (488)
                      ...|..+..+|+.++...+.
T Consensus       514 ~n~R~s~fsaLgtli~~~~d  533 (858)
T COG5215         514 SNLRVSLFSALGTLILICPD  533 (858)
T ss_pred             hhHHHHHHHHHHHHHhhcch
Confidence            56777777888887766543

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=98.94  E-value=3.1e-06  Score=82.60  Aligned_cols=389  Identities=14%  Similarity=0.113  Sum_probs=232.2

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCC-------CChhHHHHHHHHHHHhc
Q 011328           30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRD-------DFPQLQFEAAWALTNIA  102 (488)
Q Consensus        30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~-------~~~~v~~~a~~~L~~l~  102 (488)
                      +.+-.+++...|+|.+.+.-.+..+.+++...  ......+...++|.++......       ++..+...+..+     
T Consensus       636 evmlil~rEf~sPDeemkkivLKVv~qcc~t~--Gv~~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~i-----  708 (1172)
T KOG0213|consen  636 EVMLILIREFGSPDEEMKKIVLKVVKQCCATD--GVEPAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTTVEI-----  708 (1172)
T ss_pred             HHHHHHHHhhCCChHHHHHHHHHHHHHHhccc--CCCHHHHhhhhhHHHHhhhhhhhhhccccchhhHHHHHHHH-----
Confidence            55667778888999999999999999977654  3334455667777777654322       111222222221     


Q ss_pred             CCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCc--hhHHHHHhcCChHHHHHHhc-ccccHhHHHHH
Q 011328          103 SGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSP--KCRDLVLSNGALMPLLAQFN-EHAKLSMLRNA  179 (488)
Q Consensus       103 ~~~~~~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~--~~~~~~~~~~~l~~L~~ll~-~~~~~~v~~~a  179 (488)
                            ...+-....+..++.-+.++.+..|..++.++..+...-+  .+...+ +...+..++.-+. ++++..+.-..
T Consensus       709 ------a~KvG~~~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderl-eE~lidgil~Afqeqtt~d~vml~g  781 (1172)
T KOG0213|consen  709 ------AAKVGSDPIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERL-EERLIDGILYAFQEQTTEDSVMLLG  781 (1172)
T ss_pred             ------HHHhCchHHHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHH-HHHHHHHHHHHHHhcccchhhhhhh
Confidence                  2222222345666666777888888888877777653221  111111 2223444444442 23334444455


Q ss_pred             HHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchh--HHHHHHhCCHHHHHHhcCCCCcc
Q 011328          180 TWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDK--IQAVIEAGVCPRLVELLRHPSPS  257 (488)
Q Consensus       180 ~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~--~~~~~~~~~l~~L~~lL~~~~~~  257 (488)
                      ..++++-...   ........++..++..|++..+.++..++..++.++..-..+  .+.+...|  -.|.+.|....++
T Consensus       782 fg~V~~~lg~---r~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lG--vvLyEylgeeypE  856 (1172)
T KOG0213|consen  782 FGTVVNALGG---RVKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLG--VVLYEYLGEEYPE  856 (1172)
T ss_pred             HHHHHHHHhh---ccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhh--HHHHHhcCcccHH
Confidence            5555443322   223344567778888999999999999999999887422111  12222223  3467778888888


Q ss_pred             hHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh
Q 011328          258 VLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLL  337 (488)
Q Consensus       258 v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~  337 (488)
                      +.-..+.++..+...-.-....---.+++|.|..+|++. ..+++..+...++.++...++....--=..+---|+++|.
T Consensus       857 vLgsILgAikaI~nvigm~km~pPi~dllPrltPILknr-heKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLk  935 (1172)
T KOG0213|consen  857 VLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNR-HEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLK  935 (1172)
T ss_pred             HHHHHHHHHHHHHHhccccccCCChhhhcccchHhhhhh-HHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHH
Confidence            888877777766542211111111237899999999999 9999999999999999854442210000113334778888


Q ss_pred             cCChhHHHHHHHHHHHhccCCCHHH-HHHHH----------------------H-C---CChHHHHhhcCCCCHHHHHHH
Q 011328          338 NAEFEIKKEAAWAISNATSGGSNEQ-IKFLV----------------------S-Q---GCIKPLCDLLNCPDPRIVTVC  390 (488)
Q Consensus       338 ~~~~~v~~~a~~aL~~l~~~~~~~~-~~~l~----------------------~-~---~~i~~L~~ll~~~~~~v~~~a  390 (488)
                      +.+.++|..|...++.++..-.+.. ...|.                      + .   .+++.|++=...++..++.-+
T Consensus       936 ahkK~iRRaa~nTfG~IakaIGPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPalmneYrtPe~nVQnGV 1015 (1172)
T KOG0213|consen  936 AHKKEIRRAAVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVLPALMNEYRTPEANVQNGV 1015 (1172)
T ss_pred             HHHHHHHHHHHhhhhHHHHhcCHHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCchhhhHHHHhhccCchhHHHHhH
Confidence            8888999999999999986543332 11111                      1 1   235556665566777889999


Q ss_pred             HHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 011328          391 LEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETY  451 (488)
Q Consensus       391 l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~~~~~v~~~a~~~l~~~  451 (488)
                      +++++.++++-.+..+.        |.-.+     ...|++-+-+.+.--++.|..++.++
T Consensus      1016 Lkalsf~Feyigemskd--------Yiyav-----~PlleDAlmDrD~vhRqta~~~I~Hl 1063 (1172)
T KOG0213|consen 1016 LKALSFMFEYIGEMSKD--------YIYAV-----TPLLEDALMDRDLVHRQTAMNVIKHL 1063 (1172)
T ss_pred             HHHHHHHHHHHHHHhhh--------HHHHh-----hHHHHHhhccccHHHHHHHHHHHHHH
Confidence            99999998875443221        11111     23444444444455555555555544

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=98.93  E-value=1.6e-06  Score=83.50  Aligned_cols=360  Identities=16%  Similarity=0.136  Sum_probs=238.7

Q ss_pred             CCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHH
Q 011328           73 GVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRD  152 (488)
Q Consensus        73 ~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~  152 (488)
                      .++..++.-+..+. +.+|.....++..+........    .....+.+.+++......-+..+.+.++.+..+..  ..
T Consensus        96 ~~~~~~~~~~~tps-~~~q~~~~~~l~~~~~~~~~~~----~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~--i~  168 (569)
T KOG1242|consen   96 SIIEILLEELDTPS-KSVQRAVSTCLPPLVVLSKGLS----GEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLG--IE  168 (569)
T ss_pred             HHHHHHHHhcCCCc-HHHHHHHHHHhhhHHHHhhccC----HHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcH--Hh
Confidence            35677778888888 8999988888877665211111    11246777888888888889999999999987654  34


Q ss_pred             HHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCc
Q 011328          153 LVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTN  232 (488)
Q Consensus       153 ~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~  232 (488)
                      .+.+.+.+..+.+.+.+..+..-++.+..+.-..+..-........-..+|.++.-+.+....++..+..+...+...-+
T Consensus       169 ~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~  248 (569)
T KOG1242|consen  169 SLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLS  248 (569)
T ss_pred             hhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcC
Confidence            56667788888888844333333444444444444433333444455667777777777788999888888777654432


Q ss_pred             hhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHH
Q 011328          233 DKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNI  312 (488)
Q Consensus       233 ~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl  312 (488)
                      ...   ++ .+++.++.-+....+..+..++..++.++...+.+....+ ..++|.+.+.|.+. .+++|+.+..++.++
T Consensus       249 ~~a---VK-~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~l-p~iiP~lsevl~DT-~~evr~a~~~~l~~~  322 (569)
T KOG1242|consen  249 AYA---VK-LLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCL-PDLIPVLSEVLWDT-KPEVRKAGIETLLKF  322 (569)
T ss_pred             cch---hh-HhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHH-hHhhHHHHHHHccC-CHHHHHHHHHHHHHH
Confidence            211   11 2344444444444788899999999999987776655444 47999999999999 999999999999999


Q ss_pred             hc--CCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCC--CHHHHHHHHHCCChHHHHhhcCCCCHHHHH
Q 011328          313 TA--GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG--SNEQIKFLVSQGCIKPLCDLLNCPDPRIVT  388 (488)
Q Consensus       313 ~~--~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~--~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~  388 (488)
                      ++  .+++ ++     .++|.|++.+.++.-.+ .++...|+.-....  ++.....     .++.|.+-+...+..+..
T Consensus       323 ~svidN~d-I~-----~~ip~Lld~l~dp~~~~-~e~~~~L~~ttFV~~V~~psLal-----mvpiL~R~l~eRst~~kr  390 (569)
T KOG1242|consen  323 GSVIDNPD-IQ-----KIIPTLLDALADPSCYT-PECLDSLGATTFVAEVDAPSLAL-----MVPILKRGLAERSTSIKR  390 (569)
T ss_pred             HHhhccHH-HH-----HHHHHHHHHhcCcccch-HHHHHhhcceeeeeeecchhHHH-----HHHHHHHHHhhccchhhh
Confidence            87  4444 22     26888999998876333 34555555443322  1111111     366677777777888889


Q ss_pred             HHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCC---CCCCCCCC
Q 011328          389 VCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVEEDE---DEPLPPGD  465 (488)
Q Consensus       389 ~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~~~---~~~~~~~~  465 (488)
                      .+..++.|++..-+....         ....+.+.  ++.|........|++|..+.+.+..+.+.-.+   ++--|+++
T Consensus       391 ~t~~IidNm~~LveDp~~---------lapfl~~L--lp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~~f~d~~p~l~  459 (569)
T KOG1242|consen  391 KTAIIIDNMCKLVEDPKD---------LAPFLPSL--LPGLKENLDDAVPEVRAVAARALGALLERLGEVSFDDLIPELS  459 (569)
T ss_pred             hHHHHHHHHHHhhcCHHH---------HhhhHHHH--hhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhhcccccccHHH
Confidence            999999999877643322         23333322  67788888888999999999998666555333   33356665


Q ss_pred             CCC
Q 011328          466 ATQ  468 (488)
Q Consensus       466 ~~~  468 (488)
                      ++.
T Consensus       460 e~~  462 (569)
T KOG1242|consen  460 ETL  462 (569)
T ss_pred             Hhh
Confidence            444

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=98.87  E-value=3.9e-07  Score=90.94  Aligned_cols=392  Identities=15%  Similarity=0.179  Sum_probs=223.7

Q ss_pred             HHHHHHHhcC--CCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh
Q 011328           32 LPAMVAGVWS--DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT  109 (488)
Q Consensus        32 i~~l~~~L~s--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~  109 (488)
                      +...++.|++  .|.+++..|+.++..+...-. +..... -...++.+++-|+.   +-.|..|+++++.++...-..-
T Consensus       570 ~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fg-D~l~~e-L~~~L~il~eRl~n---EiTRl~AvkAlt~Ia~S~l~i~  644 (1233)
T KOG1824|consen  570 YDCTLQRLKATDSDQEVKERAISCMGQIIANFG-DFLGNE-LPRTLPILLERLGN---EITRLTAVKALTLIAMSPLDID  644 (1233)
T ss_pred             HHHHHHHHhcccccHHHHHHHHHHHHHHHHHHh-hhhhhh-hHHHHHHHHHHHhc---hhHHHHHHHHHHHHHhccceee
Confidence            3446666764  578999999999999877542 221111 12456666666655   4578899999999998433332


Q ss_pred             HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCch-hHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhc
Q 011328          110 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK-CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR  188 (488)
Q Consensus       110 ~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~  188 (488)
                      ..-.-..+++.+..+++.....++...+.++-.+...... ......+ -++..+..++ ..++-.+...++.+|..+..
T Consensus       645 l~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e-~vL~el~~Li-sesdlhvt~~a~~~L~tl~~  722 (1233)
T KOG1824|consen  645 LSPVLTEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPAELLE-AVLVELPPLI-SESDLHVTQLAVAFLTTLAI  722 (1233)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHH-HHHHHhhhhh-hHHHHHHHHHHHHHHHHHHh
Confidence            2222335688888888887777888877777776533211 1111111 1233344444 56677888899999999998


Q ss_pred             CCCCCChhhhhchHHHHHHhhccCC--hhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCc-----chHhH
Q 011328          189 GKPQPLFEQTRPALPALERLIHSND--DEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSP-----SVLIP  261 (488)
Q Consensus       189 ~~~~~~~~~~~~~~~~l~~ll~~~~--~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~-----~v~~~  261 (488)
                      ..+..-......+++.++.+++++-  ......++.....+........      + ...++.++..+-+     .+...
T Consensus       723 ~~ps~l~~~~~~iL~~ii~ll~Spllqg~al~~~l~~f~alV~t~~~~l------~-y~~l~s~lt~PV~~~~~~~l~kq  795 (1233)
T KOG1824|consen  723 IQPSSLLKISNPILDEIIRLLRSPLLQGGALSALLLFFQALVITKEPDL------D-YISLLSLLTAPVYEQVTDGLHKQ  795 (1233)
T ss_pred             cccHHHHHHhhhhHHHHHHHhhCccccchHHHHHHHHHHHHHhcCCCCc------c-HHHHHHHHcCCcccccccchhHH
Confidence            8766666667889999999998863  3333333333333332222111      2 3445566655321     22333


Q ss_pred             ----HHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh
Q 011328          262 ----ALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLL  337 (488)
Q Consensus       262 ----a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~  337 (488)
                          ...|.+.++...++....+    +-..+.++.+...+..+|..|...++.+..+.+..    -..++...+++.++
T Consensus       796 a~~siA~cvA~Lt~~~~~~s~s~----a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~s----~~~e~~~~iieaf~  867 (1233)
T KOG1824|consen  796 AYYSIAKCVAALTCACPQKSKSL----ATKLIQDLQSPKSSDSIKVFALLSLGELGRRKDLS----PQNELKDTIIEAFN  867 (1233)
T ss_pred             HHHHHHHHHHHHHHhccccchhH----HHHHHHHHhCCCCchhHHHHHHhhhhhhccCCCCC----cchhhHHHHHHHcC
Confidence                3444444444333222211    22334445544446788889999999988742111    11234557888999


Q ss_pred             cCChhHHHHHHHHHHHhccCCCHHHHHHHHHCC---------ChHHHHhhcCCCCHH-HHHHHHHHHHHHHHhhhhhhcc
Q 011328          338 NAEFEIKKEAAWAISNATSGGSNEQIKFLVSQG---------CIKPLCDLLNCPDPR-IVTVCLEGLENILKAGEAEKNM  407 (488)
Q Consensus       338 ~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~---------~i~~L~~ll~~~~~~-v~~~al~~L~~l~~~~~~~~~~  407 (488)
                      +++.+|+..|..||++++.+.-+.+.+.+.+.-         ++..|.+.+...... ....+-.+..-+++..+..+. 
T Consensus       868 sp~edvksAAs~ALGsl~vgnl~~yLpfil~qi~sqpk~QyLLLhSlkevi~~~svd~~~~~v~~IW~lL~k~cE~~ee-  946 (1233)
T KOG1824|consen  868 SPSEDVKSAASYALGSLAVGNLPKYLPFILEQIESQPKRQYLLLHSLKEVIVSASVDGLKPYVEKIWALLFKHCECAEE-  946 (1233)
T ss_pred             CChHHHHHHHHHHhhhhhcCchHhHHHHHHHHHhcchHhHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHhcccchh-
Confidence            999999999999999999866555555554311         122233333322221 223333333334444333221 


Q ss_pred             CCCCccchHHHHH------HhhccHHHHHHhhcCCCHHHHHHHHHHHH
Q 011328          408 GNTGGVNLFAQAI------DDAEGLEKIENLQSHDNTEIYEKAVKILE  449 (488)
Q Consensus       408 ~~~~~~~~~~~~l------~~~g~~~~L~~l~~~~~~~v~~~a~~~l~  449 (488)
                         +..|-..+.+      .....+.+|+..+.++.+..+..+...+.
T Consensus       947 ---gtR~vvAECLGkL~l~epesLlpkL~~~~~S~a~~~rs~vvsavK  991 (1233)
T KOG1824|consen  947 ---GTRNVVAECLGKLVLIEPESLLPKLKLLLRSEASNTRSSVVSAVK  991 (1233)
T ss_pred             ---hhHHHHHHHhhhHHhCChHHHHHHHHHHhcCCCcchhhhhhheee
Confidence               1111112211      11223677888888887777766666554

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.86  E-value=1.9e-07  Score=88.08  Aligned_cols=321  Identities=17%  Similarity=0.114  Sum_probs=205.9

Q ss_pred             HHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCch
Q 011328           70 IQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK  149 (488)
Q Consensus        70 ~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~  149 (488)
                      .-.+.+++.+..+.+++ ..+|..|+..+.|++. -........-..+...+.++..+.+..++. ++..+-.+..+-..
T Consensus        81 Y~~~iv~Pv~~cf~D~d-~~vRyyACEsLYNiaK-v~k~~v~~~Fn~iFdvL~klsaDsd~~V~~-~aeLLdRLikdIVt  157 (675)
T KOG0212|consen   81 YLEKIVPPVLNCFSDQD-SQVRYYACESLYNIAK-VAKGEVLVYFNEIFDVLCKLSADSDQNVRG-GAELLDRLIKDIVT  157 (675)
T ss_pred             HHHHhhHHHHHhccCcc-ceeeeHhHHHHHHHHH-HhccCcccchHHHHHHHHHHhcCCcccccc-HHHHHHHHHHHhcc
Confidence            34578899999999999 8999999999999987 222222222334566677776666666654 34444444322110


Q ss_pred             hHHHHHhcCChHHHHHHhc---ccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHH
Q 011328          150 CRDLVLSNGALMPLLAQFN---EHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSY  226 (488)
Q Consensus       150 ~~~~~~~~~~l~~L~~ll~---~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~  226 (488)
                      -+..   .--++.++.++.   ...++..+...+.-+..+-..++..-......+++.+..+|.+++++++..+=.++++
T Consensus       158 e~~~---tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~  234 (675)
T KOG0212|consen  158 ESAS---TFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSE  234 (675)
T ss_pred             cccc---ccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence            0010   112445555552   3457777877777676665544333444567889999999999999999777666665


Q ss_pred             hcc---CCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHH
Q 011328          227 LSD---GTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKK  303 (488)
Q Consensus       227 l~~---~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~  303 (488)
                      +..   +++..   +-....++.++..+.++++.++..|+.-+..+..-.+... ...-++++..+++.+.+.+...++.
T Consensus       235 fL~eI~s~P~s---~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~-l~~~s~il~~iLpc~s~~e~~~i~~  310 (675)
T KOG0212|consen  235 FLAEIRSSPSS---MDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDL-LLYLSGILTAILPCLSDTEEMSIKE  310 (675)
T ss_pred             HHHHHhcCccc---cCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcch-hhhhhhhhhhcccCCCCCccccHHH
Confidence            542   22211   1223677889999999999999999887877776444332 2234577888888887773334554


Q ss_pred             HHHHHHHHHhc--CCHHHHHHHHH-cCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcC
Q 011328          304 EACWTISNITA--GNVNQIQAIIE-AGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLN  380 (488)
Q Consensus       304 ~a~~~L~nl~~--~~~~~~~~l~~-~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~  380 (488)
                      .+...-..+..  +++...+. ++ ..+++.+...+.++..+.|..++.-+..+-.....+...  ........|..-|.
T Consensus       311 ~a~~~n~~l~~l~s~~~~~~~-id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~--h~~~if~tLL~tLs  387 (675)
T KOG0212|consen  311 YAQMVNGLLLKLVSSERLKEE-IDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLV--HNDSIFLTLLKTLS  387 (675)
T ss_pred             HHHHHHHHHHHHHhhhhhccc-cchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhh--hccHHHHHHHHhhc
Confidence            44433222222  11111111 22 236788888888988899988888888876554322222  23467888888899


Q ss_pred             CCCHHHHHHHHHHHHHHHHhhhh
Q 011328          381 CPDPRIVTVCLEGLENILKAGEA  403 (488)
Q Consensus       381 ~~~~~v~~~al~~L~~l~~~~~~  403 (488)
                      +++.+++..++..+.+++.....
T Consensus       388 d~sd~vvl~~L~lla~i~~s~~~  410 (675)
T KOG0212|consen  388 DRSDEVVLLALSLLASICSSSNS  410 (675)
T ss_pred             CchhHHHHHHHHHHHHHhcCccc
Confidence            99999999999999999876554

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]

Probab=98.85  E-value=1.8e-06  Score=87.44  Aligned_cols=383  Identities=14%  Similarity=0.136  Sum_probs=244.9

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh
Q 011328           30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT  109 (488)
Q Consensus        30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~  109 (488)
                      +..+..-++.+.+++.++..++.-+.++++..    ......+++++.+.++..+.. ..+|..|...+.++.......-
T Consensus       237 elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~----~~~~~~s~v~~~~~~L~~Ddq-dsVr~~a~~~~~~l~~l~~~~~  311 (759)
T KOG0211|consen  237 ELRPIVQSLCQDDTPMVRRAVASNLGNIAKVL----ESEIVKSEVLPTLIQLLRDDQ-DSVREAAVESLVSLLDLLDDDD  311 (759)
T ss_pred             HHHHHHHhhccccchhhHHHHHhhhHHHHHHH----HHHHHHhhccHHHhhhhhcch-hhHHHHHHHHHHHHHHhcCCch
Confidence            44455555556788999999999999987654    236677899999999999988 7999999999888876221111


Q ss_pred             HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCC--------------------CchhH------------------
Q 011328          110 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGD--------------------SPKCR------------------  151 (488)
Q Consensus       110 ~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~--------------------~~~~~------------------  151 (488)
                       . ....+.+.++...++++..++.........+...                    ...-+                  
T Consensus       312 -d-~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~  389 (759)
T KOG0211|consen  312 -D-VVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGPSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNAS  389 (759)
T ss_pred             -h-hhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhccccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcc
Confidence             1 1223467777777777777776655544444311                    00000                  


Q ss_pred             --HHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhcc
Q 011328          152 --DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSD  229 (488)
Q Consensus       152 --~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~  229 (488)
                        ..+.....++.+-.+. .+.+..++...+..+..+..-.+  .........|.....+++..+.|+....+.+..+-.
T Consensus       390 ~~~~i~~~~ilp~~~~lv-~d~~~~vr~a~a~~~~~~~p~~~--k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~  466 (759)
T KOG0211|consen  390 CYPNIPDSSILPEVQVLV-LDNALHVRSALASVITGLSPILP--KERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEE  466 (759)
T ss_pred             cccccchhhhhHHHHHHH-hcccchHHHHHhccccccCccCC--cCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHh
Confidence              0000111111111111 33344444443333333322211  223345677788888888899999998887766554


Q ss_pred             CCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHH
Q 011328          230 GTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTI  309 (488)
Q Consensus       230 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L  309 (488)
                      ..+...........++.+..+-....+.++.+.++.+..++....   ..+++...-+.+...+.+. ...+++.|+..+
T Consensus       467 v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~---~~~~~~~~~~l~~~~l~d~-v~~Ir~~aa~~l  542 (759)
T KOG0211|consen  467 VNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLG---VEFFDEKLAELLRTWLPDH-VYSIREAAARNL  542 (759)
T ss_pred             ccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhh---hHHhhHHHHHHHHhhhhhh-HHHHHHHHHHHh
Confidence            443333334455677778777777778899999999988886433   3444445566666677666 778999999999


Q ss_pred             HHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHH
Q 011328          310 SNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTV  389 (488)
Q Consensus       310 ~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~  389 (488)
                      ..++.......   .....++.++.+...++...|...+.++.-++...+.+.    ....+++.+.++.+++.+.|+..
T Consensus       543 ~~l~~~~G~~w---~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei----~~~~Llp~~~~l~~D~vanVR~n  615 (759)
T KOG0211|consen  543 PALVETFGSEW---ARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEI----TCEDLLPVFLDLVKDPVANVRIN  615 (759)
T ss_pred             HHHHHHhCcch---hHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccHH----HHHHHhHHHHHhccCCchhhhhh
Confidence            98887322111   112367778877777778889888888888876554443    33357999999999999999999


Q ss_pred             HHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHH
Q 011328          390 CLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKIL  448 (488)
Q Consensus       390 al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~~~~~v~~~a~~~l  448 (488)
                      ++..|..+...-...               ..+....+.++.+..+++.+++.+|....
T Consensus       616 vak~L~~i~~~L~~~---------------~~~~~v~pll~~L~~d~~~dvr~~a~~a~  659 (759)
T KOG0211|consen  616 VAKHLPKILKLLDES---------------VRDEEVLPLLETLSSDQELDVRYRAILAF  659 (759)
T ss_pred             HHHHHHHHHhhcchH---------------HHHHHHHHHHHHhccCcccchhHHHHHHH
Confidence            999999888765432               12233355666666677777766655544

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.85  E-value=1.4e-06  Score=82.34  Aligned_cols=355  Identities=10%  Similarity=0.065  Sum_probs=224.8

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh
Q 011328           30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT  109 (488)
Q Consensus        30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~  109 (488)
                      +.+++++.++...|..++..|+..+.+++...+.+....  -..++..+.++..+++ ..++. ++..+-.+..+-...+
T Consensus        84 ~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~--Fn~iFdvL~klsaDsd-~~V~~-~aeLLdRLikdIVte~  159 (675)
T KOG0212|consen   84 KIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVY--FNEIFDVLCKLSADSD-QNVRG-GAELLDRLIKDIVTES  159 (675)
T ss_pred             HhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccc--hHHHHHHHHHHhcCCc-ccccc-HHHHHHHHHHHhcccc
Confidence            678999999999999999999999999876543332222  2346667777777776 55554 4444444443111111


Q ss_pred             H-HHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHH-HhcCChHHHHHHhcccccHhHHHHHHHHHHHhh
Q 011328          110 R-VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLV-LSNGALMPLLAQFNEHAKLSMLRNATWTLSNFC  187 (488)
Q Consensus       110 ~-~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~-~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~  187 (488)
                      . .+-=.+++|.|-.-+...++..|...+.-|..+-..++ . +.+ .-...++.|++.| .+++.+++..+-.++..+.
T Consensus       160 ~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~-~-~m~~yl~~~ldGLf~~L-sD~s~eVr~~~~t~l~~fL  236 (675)
T KOG0212|consen  160 ASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPD-L-EMISYLPSLLDGLFNML-SDSSDEVRTLTDTLLSEFL  236 (675)
T ss_pred             ccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCc-H-HHHhcchHHHHHHHHHh-cCCcHHHHHHHHHHHHHHH
Confidence            1 22222445555555555788899888877777744332 2 222 1123567778888 7778888877777777766


Q ss_pred             cCC-CCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCc-chHhHHHHH
Q 011328          188 RGK-PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSP-SVLIPALRT  265 (488)
Q Consensus       188 ~~~-~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~-~v~~~a~~~  265 (488)
                      ... .....+.....++.++..+.++++.++..|+.-+..+..-.+...- ..-.|++..+++++.+..+ .++..+...
T Consensus       237 ~eI~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l-~~~s~il~~iLpc~s~~e~~~i~~~a~~~  315 (675)
T KOG0212|consen  237 AEIRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLL-LYLSGILTAILPCLSDTEEMSIKEYAQMV  315 (675)
T ss_pred             HHHhcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchh-hhhhhhhhhcccCCCCCccccHHHHHHHH
Confidence            544 2233335567888899999999999999998888877765543322 3334777888888877655 355444332


Q ss_pred             ---HhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChh
Q 011328          266 ---VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFE  342 (488)
Q Consensus       266 ---L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~  342 (488)
                         +..++.. +.....+--..+++.+.+.+.+. ..+.|..++.-+..+-...+... ......+++.|+.-|.+.+.+
T Consensus       316 n~~l~~l~s~-~~~~~~id~~~ii~vl~~~l~~~-~~~tri~~L~Wi~~l~~~~p~ql-~~h~~~if~tLL~tLsd~sd~  392 (675)
T KOG0212|consen  316 NGLLLKLVSS-ERLKEEIDYGSIIEVLTKYLSDD-REETRIAVLNWIILLYHKAPGQL-LVHNDSIFLTLLKTLSDRSDE  392 (675)
T ss_pred             HHHHHHHHhh-hhhccccchHHHHHHHHHHhhcc-hHHHHHHHHHHHHHHHhhCcchh-hhhccHHHHHHHHhhcCchhH
Confidence               2223221 11111111124677888888888 88899988877777765434332 223456899999999999999


Q ss_pred             HHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHh
Q 011328          343 IKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKA  400 (488)
Q Consensus       343 v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~  400 (488)
                      |...++..+.+++...+......     ++..|.+++..+..-+..++--+++.++-.
T Consensus       393 vvl~~L~lla~i~~s~~~~~~~~-----fl~sLL~~f~e~~~~l~~Rg~lIIRqlC~l  445 (675)
T KOG0212|consen  393 VVLLALSLLASICSSSNSPNLRK-----FLLSLLEMFKEDTKLLEVRGNLIIRQLCLL  445 (675)
T ss_pred             HHHHHHHHHHHHhcCcccccHHH-----HHHHHHHHHhhhhHHHHhhhhHHHHHHHHH
Confidence            99999999999997654322221     344555555555544445555555555443

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=98.85  E-value=6.8e-07  Score=85.24  Aligned_cols=301  Identities=14%  Similarity=0.145  Sum_probs=191.8

Q ss_pred             CHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCch--hhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhH
Q 011328           74 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSE--NTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR  151 (488)
Q Consensus        74 ~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~--~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~  151 (488)
                      ++...+++|++.. +.+|++|+...+.++.--..  --..+...|  ..|-+.+...++++.-..+.+++.+..... ++
T Consensus       605 ivStiL~~L~~k~-p~vR~~aadl~~sl~~vlk~c~e~~~l~klg--~iLyE~lge~ypEvLgsil~Ai~~I~sv~~-~~  680 (975)
T COG5181         605 IVSTILKLLRSKP-PDVRIRAADLMGSLAKVLKACGETKELAKLG--NILYENLGEDYPEVLGSILKAICSIYSVHR-FR  680 (975)
T ss_pred             HHHHHHHHhcCCC-ccHHHHHHHHHHHHHHHHHhcchHHHHHHHh--HHHHHhcCcccHHHHHHHHHHHHHHhhhhc-cc
Confidence            4666778899999 99999999998887651111  112223333  345556677889988888888877754321 11


Q ss_pred             HH-HHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhh-hchHHHHHHhhccCChhHHHHHHHHHHHhcc
Q 011328          152 DL-VLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQT-RPALPALERLIHSNDDEVLTDACWALSYLSD  229 (488)
Q Consensus       152 ~~-~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~  229 (488)
                      .. ---.|+++.+...| ++....+..+....+..+|...+....... ..+.--|+..|.+.+.+++..|..+++.++.
T Consensus       681 ~mqpPi~~ilP~ltPIL-rnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~  759 (975)
T COG5181         681 SMQPPISGILPSLTPIL-RNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISR  759 (975)
T ss_pred             ccCCchhhccccccHhh-hhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHh
Confidence            00 01246788888888 778889999999999999998755332222 3344457778888999999999999999886


Q ss_pred             CCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHH
Q 011328          230 GTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTI  309 (488)
Q Consensus       230 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L  309 (488)
                      .-..+       +++..|++-|+..+...|....-+++-.+..+.       ...++|.|+.=-.++ +..|+...+.++
T Consensus       760 aiGPq-------dvL~~LlnnLkvqeRq~RvctsvaI~iVae~cg-------pfsVlP~lm~dY~TP-e~nVQnGvLkam  824 (975)
T COG5181         760 AIGPQ-------DVLDILLNNLKVQERQQRVCTSVAISIVAEYCG-------PFSVLPTLMSDYETP-EANVQNGVLKAM  824 (975)
T ss_pred             hcCHH-------HHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcC-------chhhHHHHHhcccCc-hhHHHHhHHHHH
Confidence            54332       556677777766554444443334443333221       124566676666777 888888888888


Q ss_pred             HHHhcC-CHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHH-HHHHHHCCChHHHHhhcCCCCHHHH
Q 011328          310 SNITAG-NVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQ-IKFLVSQGCIKPLCDLLNCPDPRIV  387 (488)
Q Consensus       310 ~nl~~~-~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~-~~~l~~~~~i~~L~~ll~~~~~~v~  387 (488)
                      +.+... .....+.+..  +.|.|-..+.+.|+.-|+.|...+.+++.++..-. ...++.  ++..|.--+-++.|.++
T Consensus       825 ~fmFeyig~~s~dYvy~--itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gtg~eda~IH--LlNllwpNIle~sPhvi  900 (975)
T COG5181         825 CFMFEYIGQASLDYVYS--ITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGTGDEDAAIH--LLNLLWPNILEPSPHVI  900 (975)
T ss_pred             HHHHHHHHHHHHHHHHH--hhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCcccHHHHHH--HHHHhhhhccCCCcHHH
Confidence            877652 1223333333  67888888888899999999999999998752110 011111  12222222235667777


Q ss_pred             HHHHHHHHHHH
Q 011328          388 TVCLEGLENIL  398 (488)
Q Consensus       388 ~~al~~L~~l~  398 (488)
                      ....+.+..+.
T Consensus       901 ~~~~Eg~e~~~  911 (975)
T COG5181         901 QSFDEGMESFA  911 (975)
T ss_pred             HHHHHHHHHHH
Confidence            66666555543

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.84  E-value=2.6e-07  Score=93.02  Aligned_cols=277  Identities=17%  Similarity=0.216  Sum_probs=206.6

Q ss_pred             CHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHH
Q 011328           43 DRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFV  122 (488)
Q Consensus        43 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~  122 (488)
                      ....|+.|........+....++-       -+|..++.|-+.   --|..|+..|+....-.+.....-+.-|++|.++
T Consensus       449 FFteQLTAFevWLd~gse~r~PPe-------QLPiVLQVLLSQ---vHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVL  518 (1387)
T KOG1517|consen  449 FFTEQLTAFEVWLDYGSESRTPPE-------QLPIVLQVLLSQ---VHRLRALVLLARFLDLGPWAVDLALSVGIFPYVL  518 (1387)
T ss_pred             hHHHHHHHHHHHHHhccccCCChH-------hcchHHHHHHHH---HHHHHHHHHHHHHhccchhhhhhhhccchHHHHH
Confidence            345677777777766555433332       245555555543   3467789999999887888888888899999999


Q ss_pred             HhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccc--cHhHHHHHHHHHHHhhcCCCCCChh-hhh
Q 011328          123 RLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHA--KLSMLRNATWTLSNFCRGKPQPLFE-QTR  199 (488)
Q Consensus       123 ~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~--~~~v~~~a~~~L~~l~~~~~~~~~~-~~~  199 (488)
                      ++|++...++|-..+.+.+.|...++.|+..+++.++-...++.|..+.  +++-+..++.+|+.++.+...-+.. ...
T Consensus       519 KLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~  598 (1387)
T KOG1517|consen  519 KLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNG  598 (1387)
T ss_pred             HHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccc
Confidence            9999999999999999999988777889888888877777777774422  4567788999999999887444333 446


Q ss_pred             chHHHHHHhhccC-ChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcC----Cc
Q 011328          200 PALPALERLIHSN-DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTG----DD  274 (488)
Q Consensus       200 ~~~~~l~~ll~~~-~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~----~~  274 (488)
                      +.+..++..+.++ .+-++..++-+|+.+-++.+...=.-.+.+..+.|..+|.++-++||.+|+.+|+.+...    .+
T Consensus       599 ~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fd  678 (1387)
T KOG1517|consen  599 NLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFD  678 (1387)
T ss_pred             cHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccc
Confidence            7888888999885 688899999999999988776544456668889999999999999999999999999885    23


Q ss_pred             hhhHHH------------hhCCCh---HHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChH
Q 011328          275 MQTQCI------------INHQAL---PCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIG  330 (488)
Q Consensus       275 ~~~~~~------------~~~~~~---~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~  330 (488)
                      +....+            ++..+.   ..++..++.. .+-+|.+..-++..++.+.........-+...+
T Consensus       679 e~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdg-splvr~ev~v~ls~~~~g~~~~~~~va~n~~~~  748 (1387)
T KOG1517|consen  679 EQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDG-SPLVRTEVVVALSHFVVGYVSHLKVVAGNYLLP  748 (1387)
T ss_pred             hhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhcc-chHHHHHHHHHHHHHHHhhHHHhHHHhhhhccc
Confidence            222222            122222   3566677777 889999999999999887666555544433333

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=98.82  E-value=2.7e-07  Score=85.17  Aligned_cols=273  Identities=17%  Similarity=0.190  Sum_probs=192.8

Q ss_pred             HHHHHHcCCHHHHHHhhcCCCC-hhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCC-CCHHHHHHHHHHHhhh
Q 011328           66 INEVIQSGVVPRFIEFLSRDDF-PQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNV  143 (488)
Q Consensus        66 ~~~~~~~~~i~~L~~lL~~~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~-~~~~v~~~a~~~L~~l  143 (488)
                      .+.+...|++..|+++++.++. ..+|.+|.+.|..+..  .++++.++..| +..++.+-+. +.++.....+.+|.++
T Consensus       173 CD~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~m  249 (832)
T KOG3678|consen  173 CDAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHM  249 (832)
T ss_pred             hhHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHH
Confidence            4566678999999999999872 2469999999999875  68888888877 5555555543 6789999999999999


Q ss_pred             hCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCC--CCCChhhhhchHHHHHHhhccCChhHHHHHH
Q 011328          144 AGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK--PQPLFEQTRPALPALERLIHSNDDEVLTDAC  221 (488)
Q Consensus       144 ~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~--~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al  221 (488)
                      ..++.+....+++.|++..++-.. +..++.+.++++.+|.|++-+.  .....+....+-..|..+-.+.|.-.+..+|
T Consensus       250 FKHSeet~~~Lvaa~~lD~vl~~~-rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AC  328 (832)
T KOG3678|consen  250 FKHSEETCQRLVAAGGLDAVLYWC-RRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHAC  328 (832)
T ss_pred             hhhhHHHHHHHHhhcccchheeec-ccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHH
Confidence            999988888899999999998888 6678999999999999988665  4455566677777888887788888999999


Q ss_pred             HHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhH
Q 011328          222 WALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSI  301 (488)
Q Consensus       222 ~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v  301 (488)
                      .+...++.+.+ ....+.+.|.+..+-.++.+-+|..-..   --...+.++        ....++.|+.+|++. ..+.
T Consensus       329 lAV~vlat~KE-~E~~VrkS~TlaLVEPlva~~DP~~FAR---D~hd~aQG~--------~~d~LqRLvPlLdS~-R~EA  395 (832)
T KOG3678|consen  329 LAVAVLATNKE-VEREVRKSGTLALVEPLVASLDPGRFAR---DAHDYAQGR--------GPDDLQRLVPLLDSN-RLEA  395 (832)
T ss_pred             HHHhhhhhhhh-hhHHHhhccchhhhhhhhhccCcchhhh---hhhhhhccC--------ChHHHHHhhhhhhcc-hhhh
Confidence            99999987764 3344666676666656665555432111   000111111        124578899999877 5555


Q ss_pred             HHHHHHHHHHHhc-CC-HHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhc
Q 011328          302 KKEACWTISNITA-GN-VNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNAT  355 (488)
Q Consensus       302 ~~~a~~~L~nl~~-~~-~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~  355 (488)
                      +..+++-++.=+. .+ ....+.+.+-|.+..|-++..+++..-...|-.+|.-+-
T Consensus       396 q~i~AF~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtviG  451 (832)
T KOG3678|consen  396 QCIGAFYLCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVIG  451 (832)
T ss_pred             hhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHhc
Confidence            5555544443222 11 222334556788999999888776554455666665553

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.81  E-value=4.7e-06  Score=81.96  Aligned_cols=366  Identities=13%  Similarity=0.148  Sum_probs=233.4

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHH
Q 011328           33 PAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVV  112 (488)
Q Consensus        33 ~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~  112 (488)
                      ..|..+|.|.....+..|..-+..+.... .+      -+..+|..++...+.+ .+++.-.---|...++..++..  +
T Consensus        38 ~dL~~lLdSnkd~~KleAmKRIia~iA~G-~d------vS~~Fp~VVKNVaskn-~EVKkLVyvYLlrYAEeqpdLA--L  107 (968)
T KOG1060|consen   38 DDLKQLLDSNKDSLKLEAMKRIIALIAKG-KD------VSLLFPAVVKNVASKN-IEVKKLVYVYLLRYAEEQPDLA--L  107 (968)
T ss_pred             HHHHHHHhccccHHHHHHHHHHHHHHhcC-Cc------HHHHHHHHHHHhhccC-HHHHHHHHHHHHHHhhcCCCce--e
Confidence            46888898888888888888777766554 22      2347889999999998 8999888878888887554432  1


Q ss_pred             HhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCC
Q 011328          113 IDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQ  192 (488)
Q Consensus       113 ~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~  192 (488)
                         =-|..+-+-|.++++.+|..|+++|+.+=-  +...      +++-.-++....+..+-||..|+.++-.+-.-.+.
T Consensus       108 ---LSIntfQk~L~DpN~LiRasALRvlSsIRv--p~Ia------PI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e  176 (968)
T KOG1060|consen  108 ---LSINTFQKALKDPNQLIRASALRVLSSIRV--PMIA------PIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPE  176 (968)
T ss_pred             ---eeHHHHHhhhcCCcHHHHHHHHHHHHhcch--hhHH------HHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChh
Confidence               137888999999999999999999998721  1111      11222233333677889999999999988765533


Q ss_pred             CChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcC
Q 011328          193 PLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTG  272 (488)
Q Consensus       193 ~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~  272 (488)
                      ..    ..++..+-.+|.+.++.|.-.|+.+.-.+|.+.-+.+.     +-...+.+++.+-++.-+...+..|...|+.
T Consensus       177 ~k----~qL~e~I~~LLaD~splVvgsAv~AF~evCPerldLIH-----knyrklC~ll~dvdeWgQvvlI~mL~RYAR~  247 (968)
T KOG1060|consen  177 QK----DQLEEVIKKLLADRSPLVVGSAVMAFEEVCPERLDLIH-----KNYRKLCRLLPDVDEWGQVVLINMLTRYARH  247 (968)
T ss_pred             hH----HHHHHHHHHHhcCCCCcchhHHHHHHHHhchhHHHHhh-----HHHHHHHhhccchhhhhHHHHHHHHHHHHHh
Confidence            32    25666777888889999999999999888754332222     4457777777776666666666666666643


Q ss_pred             C---chhh---------------------HHHh-hCC---ChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHH
Q 011328          273 D---DMQT---------------------QCII-NHQ---ALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAII  324 (488)
Q Consensus       273 ~---~~~~---------------------~~~~-~~~---~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~  324 (488)
                      .   +...                     .... +.+   +++..-.+|.+. ++.|...++.+...++-.+.       
T Consensus       248 ~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~-n~sVVmA~aql~y~lAP~~~-------  319 (968)
T KOG1060|consen  248 QLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSR-NPSVVMAVAQLFYHLAPKNQ-------  319 (968)
T ss_pred             cCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcC-CcHHHHHHHhHHHhhCCHHH-------
Confidence            1   1000                     0000 100   223334456667 78888888888888865421       


Q ss_pred             HcCChHHHHHHHhcCChhHHHHHHHHHHHhccCC----------------CHHHHHH--------HHHCC----ChHHHH
Q 011328          325 EAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG----------------SNEQIKF--------LVSQG----CIKPLC  376 (488)
Q Consensus       325 ~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~----------------~~~~~~~--------l~~~~----~i~~L~  376 (488)
                      ..+++..|+++|.++ ..+|...+..+..++...                ++...+.        +....    +++-|.
T Consensus       320 ~~~i~kaLvrLLrs~-~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~~ILrE~q  398 (968)
T KOG1060|consen  320 VTKIAKALVRLLRSN-REVQYVVLQNIATISIKRPTLFEPHLKSFFVRSSDPTQVKILKLEILSNLANESNISEILRELQ  398 (968)
T ss_pred             HHHHHHHHHHHHhcC-CcchhhhHHHHHHHHhcchhhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhhccHHHHHHHHH
Confidence            123567788877664 455655666665555322                1111111        11111    234444


Q ss_pred             hhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCC
Q 011328          377 DLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVE  454 (488)
Q Consensus       377 ~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~  454 (488)
                      .++++.+..+...+..+|++.....-..                 +.-++.-|..++.+.+..|...|...+.++...
T Consensus       399 ~YI~s~d~~faa~aV~AiGrCA~~~~sv-----------------~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~  459 (968)
T KOG1060|consen  399 TYIKSSDRSFAAAAVKAIGRCASRIGSV-----------------TDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQK  459 (968)
T ss_pred             HHHhcCchhHHHHHHHHHHHHHHhhCch-----------------hhHHHHHHHHHHhcccchhHHHHHHHHHHHHhh
Confidence            5556666667777777887776543321                 122356677777777777877777777777654

>PF05536 Neurochondrin: Neurochondrin

Probab=98.79  E-value=2.2e-05  Score=78.20  Aligned_cols=380  Identities=15%  Similarity=0.110  Sum_probs=235.0

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCcc--HHHHHHcCCHHHHHHhhcCCC------ChhHHHHHHHHHHHh
Q 011328           30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPP--INEVIQSGVVPRFIEFLSRDD------FPQLQFEAAWALTNI  101 (488)
Q Consensus        30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~--~~~~~~~~~i~~L~~lL~~~~------~~~v~~~a~~~L~~l  101 (488)
                      ..+...+..|++.+.+-++.++..+.+++...+...  .+.+.+.-+.+.+-++|.++.      ....+.-|+.+|..+
T Consensus         5 ~~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f   84 (543)
T PF05536_consen    5 ASLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAF   84 (543)
T ss_pred             HHHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHH
Confidence            456778899999888899999999999887653222  334667777899999998732      156778888899999


Q ss_pred             cCCCchhh--HHHHhCCCHHHHHHhhCCCCH-HHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHH
Q 011328          102 ASGTSENT--RVVIDHGAVPIFVRLLSSPTD-DVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRN  178 (488)
Q Consensus       102 ~~~~~~~~--~~~~~~g~i~~L~~~L~~~~~-~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~  178 (488)
                      +. .|+..  ..++  +-||.|++.+.+.+. .+...|+.+|..++.. +..++.+.+.|.++.|.+.+.+  .+.....
T Consensus        85 ~~-~~~~a~~~~~~--~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~-~~G~~aLl~~g~v~~L~ei~~~--~~~~~E~  158 (543)
T PF05536_consen   85 CR-DPELASSPQMV--SRIPLLLEILSSSSDLETVDDALQCLLAIASS-PEGAKALLESGAVPALCEIIPN--QSFQMEI  158 (543)
T ss_pred             cC-ChhhhcCHHHH--HHHHHHHHHHHcCCchhHHHHHHHHHHHHHcC-cHhHHHHHhcCCHHHHHHHHHh--CcchHHH
Confidence            98 66554  3333  469999999988666 9999999999999954 5568889999999999999844  5566788


Q ss_pred             HHHHHHHhhcCCCC----CChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchh-HH----HHHHhCCHHHHHH
Q 011328          179 ATWTLSNFCRGKPQ----PLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDK-IQ----AVIEAGVCPRLVE  249 (488)
Q Consensus       179 a~~~L~~l~~~~~~----~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~-~~----~~~~~~~l~~L~~  249 (488)
                      ++.++.+++.....    ........+++.+...+.......+..++..|..+....+.. ..    .-.-..+...+..
T Consensus       159 Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~  238 (543)
T PF05536_consen  159 ALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRD  238 (543)
T ss_pred             HHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHH
Confidence            88888888765432    122233456677777777767777788888888887655311 01    1111234444555


Q ss_pred             hcCC-CCcchHhHHHHHHhHhhcCCchhhHHHh-hC-----CChHHHHHHh---------------cccchhh-------
Q 011328          250 LLRH-PSPSVLIPALRTVGNIVTGDDMQTQCII-NH-----QALPCLLDLL---------------TQNYKKS-------  300 (488)
Q Consensus       250 lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~-----~~~~~L~~lL---------------~~~~~~~-------  300 (488)
                      ++++ ..+.-|..++...+.+.....  .+.++ +.     .++-.++++.               +.+....       
T Consensus       239 iL~sr~~~~~R~~al~Laa~Ll~~~G--~~wl~~~~~~~~~~F~~Llv~l~~VEir~~L~~L~~~~~~~~~~~~~~~L~~  316 (543)
T PF05536_consen  239 ILQSRLTPSQRDPALNLAASLLDLLG--PEWLFADDKKSGKKFLLLLVNLACVEIRMSLEELLEQLNPEEYPEKQRLLAS  316 (543)
T ss_pred             HHhcCCCHHHHHHHHHHHHHHHHHhC--hHhhcCCCCCCcccHHHHHHHHHHHHHHHHhHHhhhcCCchhhHHHHHHHHH
Confidence            6655 456677777777777765311  11111 00     1222222221               1110111       


Q ss_pred             ---HHHHHHHHHHHHhc-----CCHHHHHHHHH--cCChHHHHHHHhcC------ChhHHHHHHHHHHHhccCCCHHHHH
Q 011328          301 ---IKKEACWTISNITA-----GNVNQIQAIIE--AGIIGPLVNLLLNA------EFEIKKEAAWAISNATSGGSNEQIK  364 (488)
Q Consensus       301 ---v~~~a~~~L~nl~~-----~~~~~~~~l~~--~~~l~~L~~ll~~~------~~~v~~~a~~aL~~l~~~~~~~~~~  364 (488)
                         +-+.....+.+-..     -+++....+..  .+.+..++.+|.+-      ++.....+.++|+......+...++
T Consensus       317 cf~ilE~~I~~l~~~~~~~~~~~~~~~l~kl~~~l~e~~~~vle~L~~~~d~~~~d~~~vlAsvR~L~~WLaEe~~~lr~  396 (543)
T PF05536_consen  317 CFSILEHFIGYLVRSLEEESLDLDPDTLLKLRTSLSETFSAVLEYLRDVWDESQKDPDFVLASVRVLGAWLAEETSALRK  396 (543)
T ss_pred             HHHHHHHHHHHHHhccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHhChHHHHH
Confidence               11112222222111     02333444332  34566666677543      3336677888888887765544455


Q ss_pred             HHHHCCChHHHHhhcCCCCHH----------HHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHh
Q 011328          365 FLVSQGCIKPLCDLLNCPDPR----------IVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENL  432 (488)
Q Consensus       365 ~l~~~~~i~~L~~ll~~~~~~----------v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l  432 (488)
                      .+.  ++++.++++.+.....          .+...+-+|..+..-..             .++.+...|+.+.+.+.
T Consensus       397 ~v~--~Ll~~ll~~~~~~~~~~~~~~~~~~d~~r~lLPaL~~lt~e~~-------------gr~~l~~~~g~~~l~~~  459 (543)
T PF05536_consen  397 EVY--GLLPFLLSLYRESFQEAEPAREGPLDFLRFLLPALCHLTAEEE-------------GRKILLSNGGWKLLCDD  459 (543)
T ss_pred             HHH--HHHHHHHHHHhhhhhhcccccccchhHHHHHHHHHhhhhccHH-------------HHHHHHhCCcHHHHHHH
Confidence            543  6889999988754332          34444555555543222             47777778886666653

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.76  E-value=6.3e-06  Score=80.66  Aligned_cols=324  Identities=14%  Similarity=0.081  Sum_probs=166.8

Q ss_pred             hhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCCh
Q 011328           81 FLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGAL  160 (488)
Q Consensus        81 lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l  160 (488)
                      =|++++ +-+|-..++.|+.+=.  ++...     ..+|.+...|++.+.-+|++|..++..+-....   ..+  .++-
T Consensus       107 DLQHPN-EyiRG~TLRFLckLkE--~ELle-----pl~p~IracleHrhsYVRrNAilaifsIyk~~~---~L~--pDap  173 (948)
T KOG1058|consen  107 DLQHPN-EYIRGSTLRFLCKLKE--PELLE-----PLMPSIRACLEHRHSYVRRNAILAIFSIYKNFE---HLI--PDAP  173 (948)
T ss_pred             hccCch-HhhcchhhhhhhhcCc--HHHhh-----hhHHHHHHHHhCcchhhhhhhheeehhHHhhhh---hhc--CChH
Confidence            355666 6777777777666643  33322     357888889999999999999999988864421   111  1233


Q ss_pred             HHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhc---cCChhHHHHHHHHHHHhccCCchhHHH
Q 011328          161 MPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH---SNDDEVLTDACWALSYLSDGTNDKIQA  237 (488)
Q Consensus       161 ~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~---~~~~~v~~~al~~L~~l~~~~~~~~~~  237 (488)
                      +.+-..|....|+..+++|...|...-..          .++..+...+.   +-++.++...+..+...+...+.... 
T Consensus       174 eLi~~fL~~e~DpsCkRNAFi~L~~~D~E----------rAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~~-  242 (948)
T KOG1058|consen  174 ELIESFLLTEQDPSCKRNAFLMLFTTDPE----------RALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEKA-  242 (948)
T ss_pred             HHHHHHHHhccCchhHHHHHHHHHhcCHH----------HHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHhh-
Confidence            33444555667888888877666543221          12222222221   12344444444455544443332222 


Q ss_pred             HHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcC-----------------Cchh-hHHHh--------------hCCC
Q 011328          238 VIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTG-----------------DDMQ-TQCII--------------NHQA  285 (488)
Q Consensus       238 ~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~-----------------~~~~-~~~~~--------------~~~~  285 (488)
                          ..+..+..+|.+.++.++..|..+|..++..                 .+.+ .+.+.              -.+.
T Consensus       243 ----~~i~~i~~lL~stssaV~fEaa~tlv~lS~~p~alk~Aa~~~i~l~~kesdnnvklIvldrl~~l~~~~~~il~~l  318 (948)
T KOG1058|consen  243 ----RYIRCIYNLLSSTSSAVIFEAAGTLVTLSNDPTALKAAASTYIDLLVKESDNNVKLIVLDRLSELKALHEKILQGL  318 (948)
T ss_pred             ----HHHHHHHHHHhcCCchhhhhhcceEEEccCCHHHHHHHHHHHHHHHHhccCcchhhhhHHHHHHHhhhhHHHHHHH
Confidence                2334455555444444444444333333321                 1110 00000              0133


Q ss_pred             hHHHHHHhcccchhhHHHHHHHHHHHHhc-CCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHH
Q 011328          286 LPCLLDLLTQNYKKSIKKEACWTISNITA-GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIK  364 (488)
Q Consensus       286 ~~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~  364 (488)
                      +.-++++|.++ +-++|+.++.....++. ++-+.+-.+++..+...--. =+..+...|+.-..++...+..- ++...
T Consensus       319 ~mDvLrvLss~-dldvr~Ktldi~ldLvssrNvediv~~Lkke~~kT~~~-e~d~~~~yRqlLiktih~cav~F-p~~aa  395 (948)
T KOG1058|consen  319 IMDVLRVLSSP-DLDVRSKTLDIALDLVSSRNVEDIVQFLKKEVMKTHNE-ESDDNGKYRQLLIKTIHACAVKF-PEVAA  395 (948)
T ss_pred             HHHHHHHcCcc-cccHHHHHHHHHHhhhhhccHHHHHHHHHHHHHhcccc-ccccchHHHHHHHHHHHHHhhcC-hHHHH
Confidence            44445555556 66666666666666655 23332222222111111000 00012234566666666665543 33332


Q ss_pred             HHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHH
Q 011328          365 FLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKA  444 (488)
Q Consensus       365 ~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~~~~~v~~~a  444 (488)
                           .+++.|++.+.+.++.....++..++..+...+...            ..+.    -..++.+-.-.+.++..-|
T Consensus       396 -----tvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~Lr------------~~ii----~~l~~~~~~irS~ki~rga  454 (948)
T KOG1058|consen  396 -----TVVSLLLDFISDSNEAAASDVLMFVREAIEKFPNLR------------ASII----EKLLETFPQIRSSKICRGA  454 (948)
T ss_pred             -----HHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCchHH------------HHHH----HHHHHhhhhhcccccchhH
Confidence                 358888888888888777777777777776655432            1111    1112233333456778888


Q ss_pred             HHHHHHhcCCCC
Q 011328          445 VKILETYWVEED  456 (488)
Q Consensus       445 ~~~l~~~~~~~~  456 (488)
                      .|++..|.+.++
T Consensus       455 lwi~GeYce~~~  466 (948)
T KOG1058|consen  455 LWILGEYCEGLS  466 (948)
T ss_pred             HHHHHHHHhhhH
Confidence            888888887766

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.76  E-value=3.5e-07  Score=92.09  Aligned_cols=233  Identities=15%  Similarity=0.189  Sum_probs=184.0

Q ss_pred             HHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhh
Q 011328           46 IQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLL  125 (488)
Q Consensus        46 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L  125 (488)
                      -|++|+..|..++.-. ...+..-..-|++|..++||+++. .++|..-+.+-+.|..-++.+...+++.++-..+++.|
T Consensus       486 HRlRAL~LL~RFLDlG-pWAV~LaLsVGIFPYVLKLLQS~a-~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL  563 (1387)
T KOG1517|consen  486 HRLRALVLLARFLDLG-PWAVDLALSVGIFPYVLKLLQSSA-RELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVL  563 (1387)
T ss_pred             HHHHHHHHHHHHhccc-hhhhhhhhccchHHHHHHHhccch-HhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEe
Confidence            4677899999988765 667777778899999999999999 89999999999998887899999999988888888888


Q ss_pred             CC---CCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCC-hhhhhch
Q 011328          126 SS---PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPL-FEQTRPA  201 (488)
Q Consensus       126 ~~---~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~-~~~~~~~  201 (488)
                      ..   -+++-|..|+.+|+.++.+-+-.++.+.+.+.+...+.+++.+..+-++.-++-+|..|-.+.+..+ .-...++
T Consensus       564 ~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~A  643 (1387)
T KOG1517|consen  564 DPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNA  643 (1387)
T ss_pred             cCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccH
Confidence            76   3468999999999999988777788888989999888999554567788899999999998874443 3445789


Q ss_pred             HHHHHHhhccCChhHHHHHHHHHHHhccCC----chhHHHH------------HHhCCH---HHHHHhcCCCCcchHhHH
Q 011328          202 LPALERLIHSNDDEVLTDACWALSYLSDGT----NDKIQAV------------IEAGVC---PRLVELLRHPSPSVLIPA  262 (488)
Q Consensus       202 ~~~l~~ll~~~~~~v~~~al~~L~~l~~~~----~~~~~~~------------~~~~~l---~~L~~lL~~~~~~v~~~a  262 (488)
                      ...|..+|+++-++|+..|+.+|+.+..+.    ++....+            ++.-+.   -.++.+++..++-++...
T Consensus       644 hekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev  723 (1387)
T KOG1517|consen  644 HEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEV  723 (1387)
T ss_pred             HHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHH
Confidence            999999999999999999999999988752    2222211            121112   245566677778888888


Q ss_pred             HHHHhHhhcCCchhhHHH
Q 011328          263 LRTVGNIVTGDDMQTQCI  280 (488)
Q Consensus       263 ~~~L~~l~~~~~~~~~~~  280 (488)
                      .-++..++.+.......+
T Consensus       724 ~v~ls~~~~g~~~~~~~v  741 (1387)
T KOG1517|consen  724 VVALSHFVVGYVSHLKVV  741 (1387)
T ss_pred             HHHHHHHHHhhHHHhHHH
Confidence            888888777665544433

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.72  E-value=1e-05  Score=71.18  Aligned_cols=272  Identities=15%  Similarity=0.148  Sum_probs=180.7

Q ss_pred             HHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHH
Q 011328          161 MPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIE  240 (488)
Q Consensus       161 ~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~  240 (488)
                      ..++.++ .+.++.++..|+.-+..++..............++.+.+++...++  .+.++.++.|++.... ..+.++.
T Consensus         6 ~elv~ll-~~~sP~v~~~AV~~l~~lt~~~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~-l~~~ll~   81 (353)
T KOG2973|consen    6 VELVELL-HSLSPPVRKAAVEHLLGLTGRGLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEE-LRKKLLQ   81 (353)
T ss_pred             HHHHHHh-ccCChHHHHHHHHHHhhccccchhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHH-HHHHHHH
Confidence            4567777 7889999999999999888772222222335677888899887766  7788999999998764 3344555


Q ss_pred             hCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHh------hCCChHHHHHHhcccchhhH-HHHHHHHHHHHh
Q 011328          241 AGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCII------NHQALPCLLDLLTQNYKKSI-KKEACWTISNIT  313 (488)
Q Consensus       241 ~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~------~~~~~~~L~~lL~~~~~~~v-~~~a~~~L~nl~  313 (488)
                      . ++..++..+.++........+..+.|++...........      +.+.+.......+++.+... -...+.+++|++
T Consensus        82 ~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nls  160 (353)
T KOG2973|consen   82 D-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANLS  160 (353)
T ss_pred             H-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHHHh
Confidence            4 888888888888888999999999999986554433222      24556666666665534222 235667778887


Q ss_pred             cCCHHHHHHHHHcCChH--HHHHHHhcCChhHH-HHHHHHHHHhccCCCHHHHHHHHH----------------------
Q 011328          314 AGNVNQIQAIIEAGIIG--PLVNLLLNAEFEIK-KEAAWAISNATSGGSNEQIKFLVS----------------------  368 (488)
Q Consensus       314 ~~~~~~~~~l~~~~~l~--~L~~ll~~~~~~v~-~~a~~aL~~l~~~~~~~~~~~l~~----------------------  368 (488)
                      .. +..+..+.+...++  .+..+ .+.+..|| ...+..|.|.+...  ..-..+..                      
T Consensus       161 ~~-~~gR~l~~~~k~~p~~kll~f-t~~~s~vRr~GvagtlkN~cFd~--~~h~~lL~e~~~lLp~iLlPlagpee~sEE  236 (353)
T KOG2973|consen  161 QF-EAGRKLLLEPKRFPDQKLLPF-TSEDSQVRRGGVAGTLKNCCFDA--KLHEVLLDESINLLPAILLPLAGPEELSEE  236 (353)
T ss_pred             hh-hhhhhHhcchhhhhHhhhhcc-cccchhhhccchHHHHHhhhccc--hhHHHHhcchHHHHHHHHhhcCCccccCHH
Confidence            64 44455555544322  22222 23445555 44677778866533  11122211                      


Q ss_pred             --CCChHHHHhhcC-----CCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhh-cCCCHHH
Q 011328          369 --QGCIKPLCDLLN-----CPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQ-SHDNTEI  440 (488)
Q Consensus       369 --~~~i~~L~~ll~-----~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~-~~~~~~v  440 (488)
                        .+...-| +++.     .+++.++...+++|..++....             .++.++..|+...++.+- ..+++++
T Consensus       237 dm~~LP~eL-QyLp~dKeRepdpdIrk~llEai~lLcaT~~-------------GRe~lR~kgvYpilRElhk~e~ded~  302 (353)
T KOG2973|consen  237 DMAKLPVEL-QYLPEDKEREPDPDIRKMLLEALLLLCATRA-------------GREVLRSKGVYPILRELHKWEEDEDI  302 (353)
T ss_pred             HHhcCCHhh-hcCCccccCCCChHHHHHHHHHHHHHHhhhH-------------hHHHHHhcCchHHHHHHhcCCCcHHH
Confidence              1122222 4443     3578899999999988876544             488999999999999994 5578999


Q ss_pred             HHHHHHHHHHhcCCC
Q 011328          441 YEKAVKILETYWVEE  455 (488)
Q Consensus       441 ~~~a~~~l~~~~~~~  455 (488)
                      +.++.++..-+...|
T Consensus       303 ~~ace~vvq~Lv~~e  317 (353)
T KOG2973|consen  303 REACEQVVQMLVRLE  317 (353)
T ss_pred             HHHHHHHHHHHHhcc
Confidence            999988888877743

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.71  E-value=1.2e-05  Score=79.18  Aligned_cols=256  Identities=18%  Similarity=0.185  Sum_probs=142.4

Q ss_pred             hhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCCh
Q 011328           81 FLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGAL  160 (488)
Q Consensus        81 lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l  160 (488)
                      +..+.. +.||..|+.++-.+-.-+++....+     ++.+-.+|.+.++-+.-.|+.++-.+|-+.   -+.+  .+..
T Consensus       151 ~~~D~s-~yVRk~AA~AIpKLYsLd~e~k~qL-----~e~I~~LLaD~splVvgsAv~AF~evCPer---ldLI--Hkny  219 (968)
T KOG1060|consen  151 AVTDPS-PYVRKTAAHAIPKLYSLDPEQKDQL-----EEVIKKLLADRSPLVVGSAVMAFEEVCPER---LDLI--HKNY  219 (968)
T ss_pred             HhcCCc-HHHHHHHHHhhHHHhcCChhhHHHH-----HHHHHHHhcCCCCcchhHHHHHHHHhchhH---HHHh--hHHH
Confidence            334455 6667777766666666555555533     345555666677777777777776666332   1111  1234


Q ss_pred             HHHHHHhcccccHhHHHHHHHHHHHhhcCC-CCCCh----------------------------hhhhchHHHHHHhhcc
Q 011328          161 MPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPLF----------------------------EQTRPALPALERLIHS  211 (488)
Q Consensus       161 ~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~-~~~~~----------------------------~~~~~~~~~l~~ll~~  211 (488)
                      ..+.+++ .+-++==+..++..|...++.. +....                            .-..-+++..-.++.+
T Consensus       220 rklC~ll-~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S  298 (968)
T KOG1060|consen  220 RKLCRLL-PDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQS  298 (968)
T ss_pred             HHHHhhc-cchhhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhc
Confidence            4555555 2222222333444444444433 11100                            0012234444566778


Q ss_pred             CChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHh----------
Q 011328          212 NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCII----------  281 (488)
Q Consensus       212 ~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~----------  281 (488)
                      .++.+...++.+...++....  ..     .++..|+.+|+++ ..++...+..+..++...+......+          
T Consensus       299 ~n~sVVmA~aql~y~lAP~~~--~~-----~i~kaLvrLLrs~-~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp  370 (968)
T KOG1060|consen  299 RNPSVVMAVAQLFYHLAPKNQ--VT-----KIAKALVRLLRSN-REVQYVVLQNIATISIKRPTLFEPHLKSFFVRSSDP  370 (968)
T ss_pred             CCcHHHHHHHhHHHhhCCHHH--HH-----HHHHHHHHHHhcC-CcchhhhHHHHHHHHhcchhhhhhhhhceEeecCCH
Confidence            889999999999999885432  22     4567788877764 45777777777777754332211111          


Q ss_pred             ---------------hCC----ChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChh
Q 011328          282 ---------------NHQ----ALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFE  342 (488)
Q Consensus       282 ---------------~~~----~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~  342 (488)
                                     ...    +++-+...+++. +..+...++.+|+.++......     ...++.-|+.++.+.+..
T Consensus       371 ~~vk~lKleiLs~La~esni~~ILrE~q~YI~s~-d~~faa~aV~AiGrCA~~~~sv-----~~tCL~gLv~Llsshde~  444 (968)
T KOG1060|consen  371 TQVKILKLEILSNLANESNISEILRELQTYIKSS-DRSFAAAAVKAIGRCASRIGSV-----TDTCLNGLVQLLSSHDEL  444 (968)
T ss_pred             HHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHhhCch-----hhHHHHHHHHHHhcccch
Confidence                           111    122223333444 4456667777777776532221     223566788888888888


Q ss_pred             HHHHHHHHHHHhccCCCHHH
Q 011328          343 IKKEAAWAISNATSGGSNEQ  362 (488)
Q Consensus       343 v~~~a~~aL~~l~~~~~~~~  362 (488)
                      |..++...+..|......+.
T Consensus       445 Vv~eaV~vIk~Llq~~p~~h  464 (968)
T KOG1060|consen  445 VVAEAVVVIKRLLQKDPAEH  464 (968)
T ss_pred             hHHHHHHHHHHHHhhChHHH
Confidence            88888888888876554333

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=98.70  E-value=9.7e-07  Score=81.59  Aligned_cols=266  Identities=14%  Similarity=0.107  Sum_probs=180.8

Q ss_pred             ccHHHHHHHhcCCCH--HHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCch
Q 011328           30 ESLPAMVAGVWSDDR--NIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSE  107 (488)
Q Consensus        30 ~~i~~l~~~L~s~~~--~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~  107 (488)
                      |++..|++.+++++-  +++.++++.|.+++..+   +.+.+...| +..++.+-+....++.+...+.+|.++..++.+
T Consensus       180 ~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~ae---N~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSee  255 (832)
T KOG3678|consen  180 GGLDLLLRMFQAPNLETSVRVEAARLLEQILVAE---NRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFKHSEE  255 (832)
T ss_pred             chHHHHHHHHhCCchhHHHHHHHHHHHHHHHhhh---hhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhhhHH
Confidence            788899999998764  56999999999998754   455666655 555666656555478899999999999999999


Q ss_pred             hhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCC-chhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHh
Q 011328          108 NTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDS-PKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNF  186 (488)
Q Consensus       108 ~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l  186 (488)
                      ....++..|++..++...+..++.+..+|+.+|+|++-+. ...+..+++..+.+.|..+. .+.|+-.+.+||.+.+.+
T Consensus       256 t~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA-~skDel~R~~AClAV~vl  334 (832)
T KOG3678|consen  256 TCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLA-FSKDELLRLHACLAVAVL  334 (832)
T ss_pred             HHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhh-cchHHHHHHHHHHHHhhh
Confidence            9999999999999999999989999999999999998543 45567777777777777776 666888899999999999


Q ss_pred             hcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHH
Q 011328          187 CRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTV  266 (488)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L  266 (488)
                      +.+.+........+.+..+-.++.+-|+.--          +....+..+ -...+-++.|+.+|++..-+.+.-+.+-+
T Consensus       335 at~KE~E~~VrkS~TlaLVEPlva~~DP~~F----------ARD~hd~aQ-G~~~d~LqRLvPlLdS~R~EAq~i~AF~l  403 (832)
T KOG3678|consen  335 ATNKEVEREVRKSGTLALVEPLVASLDPGRF----------ARDAHDYAQ-GRGPDDLQRLVPLLDSNRLEAQCIGAFYL  403 (832)
T ss_pred             hhhhhhhHHHhhccchhhhhhhhhccCcchh----------hhhhhhhhc-cCChHHHHHhhhhhhcchhhhhhhHHHHH
Confidence            9887655555555555544455554444221          111111111 11124577888888865544443333322


Q ss_pred             hHhhc-CC-chhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHH
Q 011328          267 GNIVT-GD-DMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNI  312 (488)
Q Consensus       267 ~~l~~-~~-~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl  312 (488)
                      +.=+. .. ....+.+-+-|.++.|-++.+++ +.--.+.|..+|.-+
T Consensus       404 ~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~-d~vaakfAseALtvi  450 (832)
T KOG3678|consen  404 CAEAAIKSLQGKTKVFSEIGAIQALKEVASSP-DEVAAKFASEALTVI  450 (832)
T ss_pred             HHHHHHHHhccchhHHHHHHHHHHHHHHhcCc-hHHHHHHHHHHHHHh
Confidence            22111 11 11233344668888888888877 544334444444433

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=98.69  E-value=8.9e-06  Score=76.78  Aligned_cols=335  Identities=16%  Similarity=0.062  Sum_probs=207.9

Q ss_pred             HHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhccc-ccHhHH
Q 011328           98 LTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEH-AKLSML  176 (488)
Q Consensus        98 L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~~v~  176 (488)
                      |..+....++.+..+.-....+.+..++-+++.++|..+.+++..+..+... -..+...+.-..++.-|.++ .+..-+
T Consensus         7 Lv~l~~~~p~l~~~~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~-l~~~~~l~id~~ii~SL~~~~~~~~ER   85 (371)
T PF14664_consen    7 LVDLLKRHPTLKYDLVLSFFGERIQCMLLSDSKEVRAAGYRILRYLISDEES-LQILLKLHIDIFIIRSLDRDNKNDVER   85 (371)
T ss_pred             HHHHHHhCchhhhhhhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHH-HHHHHHcCCchhhHhhhcccCCChHHH
Confidence            4444444565555554444556666555555599999999999999887664 45555555544555556443 344568


Q ss_pred             HHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCc
Q 011328          177 RNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSP  256 (488)
Q Consensus       177 ~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~  256 (488)
                      .+|+..+..+..... .....-.+++..++.+..+.++..+..++.++..++-.++   +.+...|++..+.+.+.++..
T Consensus        86 ~QALkliR~~l~~~~-~~~~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P---~lv~~~gG~~~L~~~l~d~~~  161 (371)
T PF14664_consen   86 EQALKLIRAFLEIKK-GPKEIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNP---ELVAECGGIRVLLRALIDGSF  161 (371)
T ss_pred             HHHHHHHHHHHHhcC-CcccCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCH---HHHHHcCCHHHHHHHHHhccH
Confidence            899999988887642 1223356889999999999999999999999999998776   457888999999999987666


Q ss_pred             chHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhccc------chh--hHHHHHHHHHHHHhcCCHHHHHHHHH-cC
Q 011328          257 SVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQN------YKK--SIKKEACWTISNITAGNVNQIQAIIE-AG  327 (488)
Q Consensus       257 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~------~~~--~v~~~a~~~L~nl~~~~~~~~~~l~~-~~  327 (488)
                      ++....+.++..+.. .+..++.+...--++.++.-+.+.      .+.  +.-..+..++..+...=+...-...+ ..
T Consensus       162 ~~~~~l~~~lL~lLd-~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~  240 (371)
T PF14664_consen  162 SISESLLDTLLYLLD-SPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFR  240 (371)
T ss_pred             hHHHHHHHHHHHHhC-CcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCch
Confidence            688888888888876 454555444433455555544332      012  22334445555554421221111111 14


Q ss_pred             ChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHH------CCCh---HHHHhhcCCCC---HHHHHHHHHHHH
Q 011328          328 IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVS------QGCI---KPLCDLLNCPD---PRIVTVCLEGLE  395 (488)
Q Consensus       328 ~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~------~~~i---~~L~~ll~~~~---~~v~~~al~~L~  395 (488)
                      .+..|+..|..+++++|+..+..+..+..-..+.....+..      .+-.   ..+..-.....   +.....-...+.
T Consensus       241 ~lksLv~~L~~p~~~ir~~Ildll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~l~~  320 (371)
T PF14664_consen  241 GLKSLVDSLRLPNPEIRKAILDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRSSKRPNLVN  320 (371)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCccccccccHHH
Confidence            68889999999999999999999999987554332222111      1111   00000000000   000000001111


Q ss_pred             HHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCC-CHHHHHHHHHHHHHhcC
Q 011328          396 NILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHD-NTEIYEKAVKILETYWV  453 (488)
Q Consensus       396 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~~-~~~v~~~a~~~l~~~~~  453 (488)
                      +...               .....|.++|.++.|.++..+. ++.+..+|.-+|..++.
T Consensus       321 ~y~a---------------Lll~ili~~gL~~~L~~li~~~~d~~l~~KAtlLL~elL~  364 (371)
T PF14664_consen  321 HYLA---------------LLLAILIEAGLLEALVELIESSEDSSLSRKATLLLGELLH  364 (371)
T ss_pred             HHHH---------------HHHHHHHHcChHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence            1110               0345578899999999997665 88999999999987653

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.69  E-value=2.4e-05  Score=76.41  Aligned_cols=256  Identities=15%  Similarity=0.168  Sum_probs=180.4

Q ss_pred             CCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHH
Q 011328           73 GVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRD  152 (488)
Q Consensus        73 ~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~  152 (488)
                      +.-+-++.+|.++. +.+|..|+.++..+....|+...     ..+|.|..-|+++++.++..|..+++.|++.+|..  
T Consensus       144 DLa~Dv~tLL~ssk-pYvRKkAIl~lykvFLkYPeAlr-----~~FprL~EkLeDpDp~V~SAAV~VICELArKnPkn--  215 (877)
T KOG1059|consen  144 DLADDVFTLLNSSK-PYVRKKAILLLYKVFLKYPEALR-----PCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQN--  215 (877)
T ss_pred             HHHHHHHHHHhcCc-hHHHHHHHHHHHHHHHhhhHhHh-----hhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcc--
Confidence            34556778899998 89999999999999886666544     34799999999999999999999999999888753  


Q ss_pred             HHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCC-hhHHHHHHHHHHH--hcc
Q 011328          153 LVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSND-DEVLTDACWALSY--LSD  229 (488)
Q Consensus       153 ~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~-~~v~~~al~~L~~--l~~  229 (488)
                      .+   ..-+.+.++|-.+++.=+....+..+.+|+.-.|    .....+++.+..++++.. ..+...++.++..  ++.
T Consensus       216 yL---~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEP----RLgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~  288 (877)
T KOG1059|consen  216 YL---QLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEP----RLGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSS  288 (877)
T ss_pred             cc---cccHHHHHHHhccCCCeehHHHHHHHhhccccCc----hhhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhcc
Confidence            11   2455666777555555566777777777775433    233567888999998763 5566666666543  333


Q ss_pred             CCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHH
Q 011328          230 GTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTI  309 (488)
Q Consensus       230 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L  309 (488)
                      +.++... -+. -+++.|-.++.+.++.++..++-+++.+....+...+.     .-+.+++.|.+. +..+|..|+..+
T Consensus       289 g~~d~~a-siq-LCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa-----~kdlIlrcL~Dk-D~SIRlrALdLl  360 (877)
T KOG1059|consen  289 GMSDHSA-SIQ-LCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQA-----HKDLILRCLDDK-DESIRLRALDLL  360 (877)
T ss_pred             CCCCcHH-HHH-HHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHH-----hHHHHHHHhccC-CchhHHHHHHHH
Confidence            3222222 111 34677777788899999999999999999876655442     356789999999 999999999999


Q ss_pred             HHHhcCCHHHHHHHHHcCChHHHHHHHhcC-ChhHHHHHHHHHHHhccCC
Q 011328          310 SNITAGNVNQIQAIIEAGIIGPLVNLLLNA-EFEIKKEAAWAISNATSGG  358 (488)
Q Consensus       310 ~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~  358 (488)
                      .-+...  ++...     ++..|+..+... ....|.+.+.-+..+++..
T Consensus       361 ~gmVsk--kNl~e-----IVk~LM~~~~~ae~t~yrdell~~II~iCS~s  403 (877)
T KOG1059|consen  361 YGMVSK--KNLME-----IVKTLMKHVEKAEGTNYRDELLTRIISICSQS  403 (877)
T ss_pred             HHHhhh--hhHHH-----HHHHHHHHHHhccchhHHHHHHHHHHHHhhhh
Confidence            888753  33333     344455544443 3466777666666666543

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=98.68  E-value=6.3e-05  Score=66.84  Aligned_cols=342  Identities=15%  Similarity=0.156  Sum_probs=225.9

Q ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCcc---HHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCch
Q 011328           31 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPP---INEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSE  107 (488)
Q Consensus        31 ~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~---~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~  107 (488)
                      .+|.|-..|..++..++..++..+..++.+.+...   +..+++.++++.++..+-.++ .++...|...+..++. .+.
T Consensus        83 lmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIgged-deVAkAAiesikrial-fpa  160 (524)
T KOG4413|consen   83 LMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGED-DEVAKAAIESIKRIAL-FPA  160 (524)
T ss_pred             hhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCc-HHHHHHHHHHHHHHHh-cHH
Confidence            34555556667899999999999999887653222   344558899999999999998 8999999999999998 788


Q ss_pred             hhHHHHhCCCHHHHH--HhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHH
Q 011328          108 NTRVVIDHGAVPIFV--RLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSN  185 (488)
Q Consensus       108 ~~~~~~~~g~i~~L~--~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~  185 (488)
                      ....+++......+-  .+-...+.-.|-..+..+..+.+-++.....+...|.+..|..-+....|.-++.+++.....
T Consensus       161 aleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvte  240 (524)
T KOG4413|consen  161 ALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTE  240 (524)
T ss_pred             HHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHH
Confidence            888888776655432  233335666777788888888888888888888889888888888555777888899999999


Q ss_pred             hhcCCCCCChhhhhchHHHHHHhhcc--CChhHHHHHHHHHHHhccCCc--h-hHHHHHHh--CCHHHHHHhcCCCCcch
Q 011328          186 FCRGKPQPLFEQTRPALPALERLIHS--NDDEVLTDACWALSYLSDGTN--D-KIQAVIEA--GVCPRLVELLRHPSPSV  258 (488)
Q Consensus       186 l~~~~~~~~~~~~~~~~~~l~~ll~~--~~~~v~~~al~~L~~l~~~~~--~-~~~~~~~~--~~l~~L~~lL~~~~~~v  258 (488)
                      ++.......+....++++.+..++.-  .++--.-.++...+.+.....  + .-+.+++.  -.++..+.....+++..
T Consensus       241 LaeteHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpda  320 (524)
T KOG4413|consen  241 LAETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDA  320 (524)
T ss_pred             HHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchH
Confidence            98877777777888999999888873  344434444444444332210  0 01122221  23444556667788999


Q ss_pred             HhHHHHHHhHhhcCCchhhHHHhhCCC--hHHHH-HHhcccchhhHHHHHHHHHHHHhc---CCHHHH----------HH
Q 011328          259 LIPALRTVGNIVTGDDMQTQCIINHQA--LPCLL-DLLTQNYKKSIKKEACWTISNITA---GNVNQI----------QA  322 (488)
Q Consensus       259 ~~~a~~~L~~l~~~~~~~~~~~~~~~~--~~~L~-~lL~~~~~~~v~~~a~~~L~nl~~---~~~~~~----------~~  322 (488)
                      +..|..+++.+-+.. +..+.+.+.|-  ...++ +..... ...-+..+..+|.+++.   -.++.+          ..
T Consensus       321 ieaAiDalGilGSnt-eGadlllkTgppaaehllarafdqn-ahakqeaaihaLaaIagelrlkpeqitDgkaeerlrcl  398 (524)
T KOG4413|consen  321 IEAAIDALGILGSNT-EGADLLLKTGPPAAEHLLARAFDQN-AHAKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCL  398 (524)
T ss_pred             HHHHHHHHHhccCCc-chhHHHhccCChHHHHHHHHHhccc-ccchHHHHHHHHHHhhccccCChhhccccHHHHHHHHH
Confidence            999999999987743 34444444332  22332 233222 33345567777777765   112211          11


Q ss_pred             HHH-------cCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHh
Q 011328          323 IIE-------AGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCD  377 (488)
Q Consensus       323 l~~-------~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~  377 (488)
                      +++       ..-...+..+++.+.++++..+..++..++... =.....+...++++...+
T Consensus       399 ifdaaaqstkldPleLFlgilqQpfpEihcAalktfTAiaaqP-WalkeifakeefieiVtD  459 (524)
T KOG4413|consen  399 IFDAAAQSTKLDPLELFLGILQQPFPEIHCAALKTFTAIAAQP-WALKEIFAKEEFIEIVTD  459 (524)
T ss_pred             HHHHHhhccCCChHHHHHHHHcCCChhhHHHHHHHHHHHHcCc-HHHHHHhcCccceeeecc
Confidence            111       123556677788889999999999999998542 122333334455554444

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=98.68  E-value=4e-05  Score=74.07  Aligned_cols=346  Identities=17%  Similarity=0.195  Sum_probs=221.9

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh
Q 011328           30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT  109 (488)
Q Consensus        30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~  109 (488)
                      ..+..+++.+..+.+.+|.....++..+.........     ..+.+.+.+++...+ ..-+..+.+.+..+..+.  ..
T Consensus        96 ~~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~~-----~~~l~~l~~ll~~~~-~~~~~~aa~~~ag~v~g~--~i  167 (569)
T KOG1242|consen   96 SIIEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLSG-----EYVLELLLELLTSTK-IAERAGAAYGLAGLVNGL--GI  167 (569)
T ss_pred             HHHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccCH-----HHHHHHHHHHhcccc-HHHHhhhhHHHHHHHcCc--HH
Confidence            3456677777888899998888888876554322222     235677888888777 788899999999888743  34


Q ss_pred             HHHHhCCCHHHHHHhhCCCCHHH-HHHHHHHHhhhhCC-CchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhh
Q 011328          110 RVVIDHGAVPIFVRLLSSPTDDV-REQAVWALGNVAGD-SPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFC  187 (488)
Q Consensus       110 ~~~~~~g~i~~L~~~L~~~~~~v-~~~a~~~L~~l~~~-~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~  187 (488)
                      ..+.+.+++..+.+...+..... |+.++.+....+.. .+.....+..  .++.++... .+....++..+..+...+.
T Consensus       168 ~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~--~lp~il~~~-~d~~~~Vr~Aa~~a~kai~  244 (569)
T KOG1242|consen  168 ESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVP--ILPSILTNF-GDKINKVREAAVEAAKAIM  244 (569)
T ss_pred             hhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHh--hHHHHHHHh-hccchhhhHHHHHHHHHHH
Confidence            45566788899999888744333 33333333322221 1111112221  344444444 4556678877777766655


Q ss_pred             cCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHh
Q 011328          188 RGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVG  267 (488)
Q Consensus       188 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~  267 (488)
                      ..-+.   ....-++|.++.-+....+.....++..++.++...+.+.. ..-..++|.+.+.|.+..+++|..+..++.
T Consensus       245 ~~~~~---~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs-~~lp~iiP~lsevl~DT~~evr~a~~~~l~  320 (569)
T KOG1242|consen  245 RCLSA---YAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLS-LCLPDLIPVLSEVLWDTKPEVRKAGIETLL  320 (569)
T ss_pred             HhcCc---chhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHH-HHHhHhhHHHHHHHccCCHHHHHHHHHHHH
Confidence            43211   12234455555555555788889999999999988776655 445589999999999999999999999999


Q ss_pred             HhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhc-C--CHHHHHHHHHcCChHHHHHHHhcCChhHH
Q 011328          268 NIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA-G--NVNQIQAIIEAGIIGPLVNLLLNAEFEIK  344 (488)
Q Consensus       268 ~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~--~~~~~~~l~~~~~l~~L~~ll~~~~~~v~  344 (488)
                      .++.--+.. .  +. ..++.|++.+.++ ...+ .++...|+.=.. +  .+...     .-++|.|.+-+...+...+
T Consensus       321 ~~~svidN~-d--I~-~~ip~Lld~l~dp-~~~~-~e~~~~L~~ttFV~~V~~psL-----almvpiL~R~l~eRst~~k  389 (569)
T KOG1242|consen  321 KFGSVIDNP-D--IQ-KIIPTLLDALADP-SCYT-PECLDSLGATTFVAEVDAPSL-----ALMVPILKRGLAERSTSIK  389 (569)
T ss_pred             HHHHhhccH-H--HH-HHHHHHHHHhcCc-ccch-HHHHHhhcceeeeeeecchhH-----HHHHHHHHHHHhhccchhh
Confidence            988632211 1  11 3677888888877 4222 223333332111 0  11111     1146666666777788899


Q ss_pred             HHHHHHHHHhccCC-CHH-HHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhh
Q 011328          345 KEAAWAISNATSGG-SNE-QIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEA  403 (488)
Q Consensus       345 ~~a~~aL~~l~~~~-~~~-~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~  403 (488)
                      +.++..+.|++.-- ++. ..+++-+  +++.|...+.+..|++|..+..+|..+.+....
T Consensus       390 r~t~~IidNm~~LveDp~~lapfl~~--Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~  448 (569)
T KOG1242|consen  390 RKTAIIIDNMCKLVEDPKDLAPFLPS--LLPGLKENLDDAVPEVRAVAARALGALLERLGE  448 (569)
T ss_pred             hhHHHHHHHHHHhhcCHHHHhhhHHH--HhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHh
Confidence            99999999998643 333 3344333  677777778888999999999999888776543

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=98.62  E-value=1.3e-05  Score=81.27  Aligned_cols=313  Identities=12%  Similarity=0.179  Sum_probs=206.9

Q ss_pred             ChhhHHHHhhhccHHHHHHHhcC-CCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHH
Q 011328           19 DPMFFIIQLQLESLPAMVAGVWS-DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWA   97 (488)
Q Consensus        19 ~~~~~~~~~~~~~i~~l~~~L~s-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~   97 (488)
                      ...|.+....++.++-+...|.+ .++.++..|+..+..+.+.  .+....+...+++..|+.+|++.  |..|..++.+
T Consensus      1760 asvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan--~~Cv~~~a~~~vL~~LL~lLHS~--PS~R~~vL~v 1835 (2235)
T KOG1789|consen 1760 ASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATAN--KECVTDLATCNVLTTLLTLLHSQ--PSMRARVLDV 1835 (2235)
T ss_pred             hhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcc--cHHHHHHHhhhHHHHHHHHHhcC--hHHHHHHHHH
Confidence            34455555566888888888885 7889999999999887654  57788899999999999999876  5889999999


Q ss_pred             HHHhcCCCchhhHHHHhCCCHHHHHHhh-CCCCHHHHHHHHHHHhhhhCCC---chhHHHHHh----------cCChHHH
Q 011328           98 LTNIASGTSENTRVVIDHGAVPIFVRLL-SSPTDDVREQAVWALGNVAGDS---PKCRDLVLS----------NGALMPL  163 (488)
Q Consensus        98 L~~l~~~~~~~~~~~~~~g~i~~L~~~L-~~~~~~v~~~a~~~L~~l~~~~---~~~~~~~~~----------~~~l~~L  163 (488)
                      |..+++ +++....-.+.|++..+..++ .+.++..|..++..++.+..+.   |..+-.++.          .+.-+..
T Consensus      1836 LYAL~S-~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFLP~~f~d~~RD~PEAa 1914 (2235)
T KOG1789|consen 1836 LYALSS-NGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFLPEIFADSLRDSPEAA 1914 (2235)
T ss_pred             HHHHhc-CcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhchHHHHHHHhcCHHHH
Confidence            999999 777777777888777777654 5678999999999999997543   211111111          0111333


Q ss_pred             HHHhcc-ccc------HhHHHHHHHHHHHhhc----CC---C--------------------------------------
Q 011328          164 LAQFNE-HAK------LSMLRNATWTLSNFCR----GK---P--------------------------------------  191 (488)
Q Consensus       164 ~~ll~~-~~~------~~v~~~a~~~L~~l~~----~~---~--------------------------------------  191 (488)
                      +..+.. +++      +..+......+..+..    ..   +                                      
T Consensus      1915 VH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~aVGG~~~R~Fi~~P~f~L 1994 (2235)
T KOG1789|consen 1915 VHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECAVGGSINREFVVGPGFNL 1994 (2235)
T ss_pred             HHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCcccchhhhHHHhhCCCCcc
Confidence            333321 111      1222222222322211    00   0                                      


Q ss_pred             CCChhhhhchHHHHHHhhccCC--hhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHh
Q 011328          192 QPLFEQTRPALPALERLIHSND--DEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNI  269 (488)
Q Consensus       192 ~~~~~~~~~~~~~l~~ll~~~~--~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l  269 (488)
                      ........+.+..+.+++..++  .......-.++..+....+...+.+-..|.+|.++..+...+..+-..|++.|..+
T Consensus      1995 R~Pk~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am~~~n~s~P~SaiRVlH~L 2074 (2235)
T KOG1789|consen 1995 RHPKLFLTELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAMCLQNTSAPRSAIRVLHEL 2074 (2235)
T ss_pred             cCHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHHHhcCCcCcHHHHHHHHHH
Confidence            0011222445555666665443  22233333344445555566666666679999999999887777789999999999


Q ss_pred             hcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhc-CCHHHHHHHHHcCChHHHHHHHhcC
Q 011328          270 VTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA-GNVNQIQAIIEAGIIGPLVNLLLNA  339 (488)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~l~~L~~ll~~~  339 (488)
                      +. +..+.+.+.....+..++..+...  ....--|+.+|..+.. ...+.....++.|++|.|+.+|...
T Consensus      2075 se-n~~C~~AMA~l~~i~~~m~~mkK~--~~~~GLA~EalkR~~~r~~~eLVAQ~LK~gLvpyLL~LLd~~ 2142 (2235)
T KOG1789|consen 2075 SE-NQFCCDAMAQLPCIDGIMKSMKKQ--PSLMGLAAEALKRLMKRNTGELVAQMLKCGLVPYLLQLLDSS 2142 (2235)
T ss_pred             hh-ccHHHHHHhccccchhhHHHHHhc--chHHHHHHHHHHHHHHHhHHHHHHHHhccCcHHHHHHHhccc
Confidence            87 556666676667777788877654  2334467777877776 3455666677899999999999865

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=98.62  E-value=1.9e-05  Score=69.99  Aligned_cols=317  Identities=15%  Similarity=0.130  Sum_probs=203.3

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHH--HHhhcCCCChhHHHHHHHHHHHhcCCCch
Q 011328           30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRF--IEFLSRDDFPQLQFEAAWALTNIASGTSE  107 (488)
Q Consensus        30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L--~~lL~~~~~~~v~~~a~~~L~~l~~~~~~  107 (488)
                      +.++.++.++..+|.++...|...+..++..  +.....+.+++....+  .++-...+ .-.|...+..+..+.+-+++
T Consensus       128 eilklildcIggeddeVAkAAiesikrialf--paaleaiFeSellDdlhlrnlaakcn-diaRvRVleLIieifSiSpe  204 (524)
T KOG4413|consen  128 EILKLILDCIGGEDDEVAKAAIESIKRIALF--PAALEAIFESELLDDLHLRNLAAKCN-DIARVRVLELIIEIFSISPE  204 (524)
T ss_pred             hHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc--HHHHHHhcccccCChHHHhHHHhhhh-hHHHHHHHHHHHHHHhcCHH
Confidence            7889999999999999999999999997654  3444555555544443  23323333 46788888999999998999


Q ss_pred             hhHHHHhCCCHHHHHHhhCC-CCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcc-cccHhHHHHHHHHHHH
Q 011328          108 NTRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE-HAKLSMLRNATWTLSN  185 (488)
Q Consensus       108 ~~~~~~~~g~i~~L~~~L~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~~v~~~a~~~L~~  185 (488)
                      ..+..-+.|.+..|..-++. ++.-++.+++.....++...- .++.+...|.++.+.+.+.. ++++--.-.++.....
T Consensus       205 saneckkSGLldlLeaElkGteDtLVianciElvteLaeteH-greflaQeglIdlicnIIsGadsdPfekfralmgfgk  283 (524)
T KOG4413|consen  205 SANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEH-GREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGK  283 (524)
T ss_pred             HHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhh-hhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHH
Confidence            99999999999999988876 788889999999999886443 36677777888877777732 2344333345555555


Q ss_pred             hhcCCCCCC------hhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCC--HHHH-HHhcCCCCc
Q 011328          186 FCRGKPQPL------FEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGV--CPRL-VELLRHPSP  256 (488)
Q Consensus       186 l~~~~~~~~------~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~--l~~L-~~lL~~~~~  256 (488)
                      +........      ......++....+++..+|+..+..+..+++.+.++... .+.+.+.|-  ...+ ......+..
T Consensus       284 ffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteG-adlllkTgppaaehllarafdqnah  362 (524)
T KOG4413|consen  284 FFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEG-ADLLLKTGPPAAEHLLARAFDQNAH  362 (524)
T ss_pred             HhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcch-hHHHhccCChHHHHHHHHHhccccc
Confidence            444321111      111133455556777889999999999999999876543 354555443  2222 333333444


Q ss_pred             chHhHHHHHHhHhhcCCc---hh----------hHHHh-------hCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCC
Q 011328          257 SVLIPALRTVGNIVTGDD---MQ----------TQCII-------NHQALPCLLDLLTQNYKKSIKKEACWTISNITAGN  316 (488)
Q Consensus       257 ~v~~~a~~~L~~l~~~~~---~~----------~~~~~-------~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~  316 (488)
                      .-+..++.+|.+++....   ++          +..++       +..-...+..+++.+ .++++..+..++..++...
T Consensus       363 akqeaaihaLaaIagelrlkpeqitDgkaeerlrclifdaaaqstkldPleLFlgilqQp-fpEihcAalktfTAiaaqP  441 (524)
T KOG4413|consen  363 AKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCLIFDAAAQSTKLDPLELFLGILQQP-FPEIHCAALKTFTAIAAQP  441 (524)
T ss_pred             chHHHHHHHHHHhhccccCChhhccccHHHHHHHHHHHHHHhhccCCChHHHHHHHHcCC-ChhhHHHHHHHHHHHHcCc
Confidence            456677888888775321   10          11111       113356677788888 8999999999999998763


Q ss_pred             HHHHHHHHHcCChHHHHHHHhcC---ChhHHHHHHHHHH
Q 011328          317 VNQIQAIIEAGIIGPLVNLLLNA---EFEIKKEAAWAIS  352 (488)
Q Consensus       317 ~~~~~~l~~~~~l~~L~~ll~~~---~~~v~~~a~~aL~  352 (488)
                      =-....+...+++..+...-...   ..+-|.+++.++.
T Consensus       442 WalkeifakeefieiVtDastEhaKaakdAkYeccKAia  480 (524)
T KOG4413|consen  442 WALKEIFAKEEFIEIVTDASTEHAKAAKDAKYECCKAIA  480 (524)
T ss_pred             HHHHHHhcCccceeeecccchhhHHHHHHHHHHHHHHHH
Confidence            33333333456665554432222   2234444454443

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.60  E-value=1.4e-05  Score=70.40  Aligned_cols=272  Identities=14%  Similarity=0.188  Sum_probs=175.5

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHH--HcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh
Q 011328           32 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVI--QSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT  109 (488)
Q Consensus        32 i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~--~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~  109 (488)
                      ...+++++.+.+|.++..|+..+..+...    ..+.+.  +...++.+.+++...+ +  ...|+.++.|++. .++.+
T Consensus         5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~----~~~~~~~~~~~~lk~l~qL~~~~~-~--~~~a~~alVnlsq-~~~l~   76 (353)
T KOG2973|consen    5 LVELVELLHSLSPPVRKAAVEHLLGLTGR----GLQSLSKYSEALLKDLTQLLKDLD-P--AEPAATALVNLSQ-KEELR   76 (353)
T ss_pred             HHHHHHHhccCChHHHHHHHHHHhhcccc----chhhhccchhhhHHHHHHHccCcc-c--ccHHHHHHHHHHh-hHHHH
Confidence            44688999999999999999999887654    122222  3457888889998887 5  6788999999999 78888


Q ss_pred             HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhc-----CChHHHHHHhcccc-c-HhHHHHHHHH
Q 011328          110 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSN-----GALMPLLAQFNEHA-K-LSMLRNATWT  182 (488)
Q Consensus       110 ~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-----~~l~~L~~ll~~~~-~-~~v~~~a~~~  182 (488)
                      +.++.. .+..+...+.++...+....+..++|++++...+.......     .++..++....+.+ + ..-..+.+..
T Consensus        77 ~~ll~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~v  155 (353)
T KOG2973|consen   77 KKLLQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPV  155 (353)
T ss_pred             HHHHHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHH
Confidence            888876 77777778877777888889999999999887665554332     23444444432222 2 1334566777


Q ss_pred             HHHhhcCCCCCChhhhhchH--HHHHHhhccCChhHH-HHHHHHHHHhccCCchhHHHHHHh--CCHHHH----------
Q 011328          183 LSNFCRGKPQPLFEQTRPAL--PALERLIHSNDDEVL-TDACWALSYLSDGTNDKIQAVIEA--GVCPRL----------  247 (488)
Q Consensus       183 L~~l~~~~~~~~~~~~~~~~--~~l~~ll~~~~~~v~-~~al~~L~~l~~~~~~~~~~~~~~--~~l~~L----------  247 (488)
                      ++++++.............+  +.+..+-. .+..+| ...+.+|.|.|-....... +++.  .+++.+          
T Consensus       156 f~nls~~~~gR~l~~~~k~~p~~kll~ft~-~~s~vRr~GvagtlkN~cFd~~~h~~-lL~e~~~lLp~iLlPlagpee~  233 (353)
T KOG2973|consen  156 FANLSQFEAGRKLLLEPKRFPDQKLLPFTS-EDSQVRRGGVAGTLKNCCFDAKLHEV-LLDESINLLPAILLPLAGPEEL  233 (353)
T ss_pred             HHHHhhhhhhhhHhcchhhhhHhhhhcccc-cchhhhccchHHHHHhhhccchhHHH-HhcchHHHHHHHHhhcCCcccc
Confidence            88888766444433333322  22333323 444553 4466777777654432211 2221  122222          


Q ss_pred             -----------HHhcC-----CCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHH
Q 011328          248 -----------VELLR-----HPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISN  311 (488)
Q Consensus       248 -----------~~lL~-----~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~n  311 (488)
                                 ++.|.     .+++.+|..-+.+|..++. ....++.+...|+.+.+-.+=+...+++++..+-.....
T Consensus       234 sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLca-T~~GRe~lR~kgvYpilRElhk~e~ded~~~ace~vvq~  312 (353)
T KOG2973|consen  234 SEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCA-TRAGREVLRSKGVYPILRELHKWEEDEDIREACEQVVQM  312 (353)
T ss_pred             CHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHh-hhHhHHHHHhcCchHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence                       13332     2467899999999999987 445667777777777777766666567777666665555


Q ss_pred             HhcC
Q 011328          312 ITAG  315 (488)
Q Consensus       312 l~~~  315 (488)
                      +...
T Consensus       313 Lv~~  316 (353)
T KOG2973|consen  313 LVRL  316 (353)
T ss_pred             HHhc
Confidence            5553

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=98.59  E-value=3.1e-07  Score=86.12  Aligned_cols=309  Identities=13%  Similarity=0.109  Sum_probs=194.7

Q ss_pred             HHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCC-CCCChhhhhchHHHHHHhhcc
Q 011328          133 REQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIHS  211 (488)
Q Consensus       133 ~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~~~l~~ll~~  211 (488)
                      ..+++.+|..+++.....|.-+.+..+.+.|++.| .+++..+...+...++|+.-.. +-.......+++..++.++.+
T Consensus       406 ~~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~L-s~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~s  484 (743)
T COG5369         406 FVAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDAL-SNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMS  484 (743)
T ss_pred             HHHHHHHHHHhhHHHHHHHhhccccchHHHHHHHh-cCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhc
Confidence            34455566666666566677788888899999999 5555556666777777766544 444556668999999999999


Q ss_pred             CChhHHHHHHHHHHHhccCCchh--HHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCch---hhHHHhhC---
Q 011328          212 NDDEVLTDACWALSYLSDGTNDK--IQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDM---QTQCIINH---  283 (488)
Q Consensus       212 ~~~~v~~~al~~L~~l~~~~~~~--~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~---~~~~~~~~---  283 (488)
                      .|..++....|.+..+..+..+.  .+ .+..-++..++.+..++...++..++.++.|+.+.+..   .....++.   
T Consensus       485 KDdaLqans~wvlrHlmyncq~~ekf~-~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~  563 (743)
T COG5369         485 KDDALQANSEWVLRHLMYNCQKNEKFK-FLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPR  563 (743)
T ss_pred             chhhhhhcchhhhhhhhhcCcchhhhh-hHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChH
Confidence            99999999999999998665433  33 44446789999999999999999999999999984433   11112221   


Q ss_pred             -CChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHH-cCChHHHHHHHhcC-----------ChhHHHHHHHH
Q 011328          284 -QALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIE-AGIIGPLVNLLLNA-----------EFEIKKEAAWA  350 (488)
Q Consensus       284 -~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~-~~~l~~L~~ll~~~-----------~~~v~~~a~~a  350 (488)
                       -+.+.+.+.+... ++-.-...++.|.+++..+......+.+ ..++..+..++...           ..++-..-...
T Consensus       564 ~ylfk~l~~k~e~~-np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~  642 (743)
T COG5369         564 RYLFKRLIDKYEEN-NPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYT  642 (743)
T ss_pred             HHHHHHHHHHHHhc-CchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCcccee
Confidence             2456677777776 6666667788999888865554444443 33455444444321           11122222222


Q ss_pred             HHHhccCCCHHHHHHHHHCCChHHHHhhcC---CCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHH
Q 011328          351 ISNATSGGSNEQIKFLVSQGCIKPLCDLLN---CPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLE  427 (488)
Q Consensus       351 L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~---~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~  427 (488)
                      ..++..+.+ ...+.....   +.+-.+=+   +++.++-....|.+.++....+..+..   +..-.....+.+.|.-+
T Consensus       643 ~v~l~e~~d-~f~r~~~~~---p~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vt---ratveR~~iL~~~G~~e  715 (743)
T COG5369         643 IVNLSENSD-KFKRLVLTT---PHLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVT---RATVERIQILCANGIRE  715 (743)
T ss_pred             eeccccccc-ccccceecC---CCccccccccCCCchhhhhccceEEEecccCccCCccc---hhhHHHHHHHHHccHHH
Confidence            233322211 111111100   11111111   234456666677777754333222211   01111367788899999


Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHHh
Q 011328          428 KIENLQSHDNTEIYEKAVKILETY  451 (488)
Q Consensus       428 ~L~~l~~~~~~~v~~~a~~~l~~~  451 (488)
                      -++.++.++++.|++++..+|.++
T Consensus       716 ~l~k~q~~~Sl~vrek~~taL~~l  739 (743)
T COG5369         716 WLVKIQAKDSLIVREKIGTALENL  739 (743)
T ss_pred             HHHHHhccCcHHHHHHHHHHHHhh
Confidence            999999999999999999988764

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.59  E-value=5.8e-05  Score=73.61  Aligned_cols=302  Identities=12%  Similarity=0.088  Sum_probs=187.1

Q ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCC-hhHHHHHHHHHHHhcCCCchhh
Q 011328           31 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDF-PQLQFEAAWALTNIASGTSENT  109 (488)
Q Consensus        31 ~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~-~~v~~~a~~~L~~l~~~~~~~~  109 (488)
                      .+..+.+.|.|.|+.....|+.++.++.+.+   ....+     -+-+-++|.++++ +-++..|+.||..+...+|+..
T Consensus       112 vin~iknDL~srn~~fv~LAL~~I~niG~re---~~ea~-----~~DI~KlLvS~~~~~~vkqkaALclL~L~r~spDl~  183 (938)
T KOG1077|consen  112 VINSIKNDLSSRNPTFVCLALHCIANIGSRE---MAEAF-----ADDIPKLLVSGSSMDYVKQKAALCLLRLFRKSPDLV  183 (938)
T ss_pred             HHHHHHhhhhcCCcHHHHHHHHHHHhhccHh---HHHHh-----hhhhHHHHhCCcchHHHHHHHHHHHHHHHhcCcccc
Confidence            4556777788899999999999999986643   22222     1222356655542 5689999999999998766543


Q ss_pred             HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhc---c---------cccHhHHH
Q 011328          110 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN---E---------HAKLSMLR  177 (488)
Q Consensus       110 ~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~---~---------~~~~~v~~  177 (488)
                      .   ..+....++.+|.+.+..+...+...+..++...++....... -.+..|.....   .         -+.+=++.
T Consensus       184 ~---~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~-~avs~L~riv~~~~t~~qdYTyy~vP~PWL~v  259 (938)
T KOG1077|consen  184 N---PGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLP-LAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQV  259 (938)
T ss_pred             C---hhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHH-HHHHHHHHHHhhcccchhhceeecCCChHHHH
Confidence            2   3367889999999988888888888888888766653222111 01222222221   0         02344566


Q ss_pred             HHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccC--C-----hhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHh
Q 011328          178 NATWTLSNFCRGKPQPLFEQTRPALPALERLIHSN--D-----DEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVEL  250 (488)
Q Consensus       178 ~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~--~-----~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~l  250 (488)
                      .++.+|.++-...+.........++..++...+.+  .     ......++.-..+++.+-+..-+.+.  ..+..|-++
T Consensus       260 Kl~rlLq~~p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~--~~~~~Lg~f  337 (938)
T KOG1077|consen  260 KLLRLLQIYPTPEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLS--RAVNQLGQF  337 (938)
T ss_pred             HHHHHHHhCCCCCCchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHH--HHHHHHHHH
Confidence            66777766622222222223334444444443311  1     12223333333344433222212222  457788889


Q ss_pred             cCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChH
Q 011328          251 LRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIG  330 (488)
Q Consensus       251 L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~  330 (488)
                      +.+.+..+|..|+..++.++.... ....+-. . .+.++..|+...+..+|+.|+..|..++..  ++.+     .++.
T Consensus       338 ls~rE~NiRYLaLEsm~~L~ss~~-s~davK~-h-~d~Ii~sLkterDvSirrravDLLY~mcD~--~Nak-----~IV~  407 (938)
T KOG1077|consen  338 LSHRETNIRYLALESMCKLASSEF-SIDAVKK-H-QDTIINSLKTERDVSIRRRAVDLLYAMCDV--SNAK-----QIVA  407 (938)
T ss_pred             hhcccccchhhhHHHHHHHHhccc-hHHHHHH-H-HHHHHHHhccccchHHHHHHHHHHHHHhch--hhHH-----HHHH
Confidence            999999999999999999998633 2333333 2 778889998665999999999999998863  2222     2566


Q ss_pred             HHHHHHhcCChhHHHHHHHHHHHhcc
Q 011328          331 PLVNLLLNAEFEIKKEAAWAISNATS  356 (488)
Q Consensus       331 ~L~~ll~~~~~~v~~~a~~aL~~l~~  356 (488)
                      .|++.|.+.++.+|+....=.+-++.
T Consensus       408 elLqYL~tAd~sireeivlKvAILaE  433 (938)
T KOG1077|consen  408 ELLQYLETADYSIREEIVLKVAILAE  433 (938)
T ss_pred             HHHHHHhhcchHHHHHHHHHHHHHHH
Confidence            68888888888888776665555554

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.58  E-value=1.8e-05  Score=76.53  Aligned_cols=220  Identities=15%  Similarity=0.140  Sum_probs=149.4

Q ss_pred             HHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCc-----hhHHH
Q 011328          163 LLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTN-----DKIQA  237 (488)
Q Consensus       163 L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~-----~~~~~  237 (488)
                      +..+. .+.|..++.+|+.+|..|..+.     ..-.-.....++++++.+..|+..|+..+.......+     +..+.
T Consensus       203 l~~~~-~~~D~~Vrt~A~eglL~L~eg~-----kL~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~  276 (823)
T KOG2259|consen  203 LIYLE-HDQDFRVRTHAVEGLLALSEGF-----KLSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEE  276 (823)
T ss_pred             HHHHh-cCCCcchHHHHHHHHHhhcccc-----cccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhh
Confidence            56665 7788899999999999888743     2223456778899999999999999776665543221     11111


Q ss_pred             HHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHH--hc-
Q 011328          238 VIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNI--TA-  314 (488)
Q Consensus       238 ~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl--~~-  314 (488)
                      -.....+..+...+.+.+..+|..|..+|+.+-.-+++...+.++..++..+-..-.      ..+..-...++-  ++ 
T Consensus       277 kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~------ahkrpk~l~s~GewSsG  350 (823)
T KOG2259|consen  277 KLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRT------AHKRPKALYSSGEWSSG  350 (823)
T ss_pred             hhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhh------cccchHHHHhcCCcccC
Confidence            222256788888899999999999999999987766655555444333332211110      011111111211  11 


Q ss_pred             ----------CCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCH
Q 011328          315 ----------GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDP  384 (488)
Q Consensus       315 ----------~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~  384 (488)
                                ...+.-..++.+|.-..++.-+.+.-.+||..|...++.++... +.....     .++.|++++.++..
T Consensus       351 k~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ss-P~FA~~-----aldfLvDMfNDE~~  424 (823)
T KOG2259|consen  351 KEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSS-PGFAVR-----ALDFLVDMFNDEIE  424 (823)
T ss_pred             ccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCC-CCcHHH-----HHHHHHHHhccHHH
Confidence                      11223345777888888888888888899999999999999754 344333     58999999999999


Q ss_pred             HHHHHHHHHHHHHHHh
Q 011328          385 RIVTVCLEGLENILKA  400 (488)
Q Consensus       385 ~v~~~al~~L~~l~~~  400 (488)
                      .++..++.+|..|...
T Consensus       425 ~VRL~ai~aL~~Is~~  440 (823)
T KOG2259|consen  425 VVRLKAIFALTMISVH  440 (823)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999988765

>TIGR02270 conserved hypothetical protein

Probab=98.58  E-value=2.3e-05  Score=74.88  Aligned_cols=242  Identities=17%  Similarity=0.055  Sum_probs=165.3

Q ss_pred             ccHHHHHHHhc-CCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchh
Q 011328           30 ESLPAMVAGVW-SDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN  108 (488)
Q Consensus        30 ~~i~~l~~~L~-s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~  108 (488)
                      ..++.++..|. .+++.+...++..+..   .+ ..        ..+..|++.|.+.+ +.++..++.+|+.+-.     
T Consensus        54 ~a~~~L~~aL~~d~~~ev~~~aa~al~~---~~-~~--------~~~~~L~~~L~d~~-~~vr~aaa~ALg~i~~-----  115 (410)
T TIGR02270        54 AATELLVSALAEADEPGRVACAALALLA---QE-DA--------LDLRSVLAVLQAGP-EGLCAGIQAALGWLGG-----  115 (410)
T ss_pred             hHHHHHHHHHhhCCChhHHHHHHHHHhc---cC-Ch--------HHHHHHHHHhcCCC-HHHHHHHHHHHhcCCc-----
Confidence            34666777774 4566666655555432   11 11        13788888888888 7899999988876543     


Q ss_pred             hHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhc
Q 011328          109 TRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR  188 (488)
Q Consensus       109 ~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~  188 (488)
                            ....+.|+.+|++.++.++..++.+++....            ...+.+...| ++.++.++..++.+|..+-.
T Consensus       116 ------~~a~~~L~~~L~~~~p~vR~aal~al~~r~~------------~~~~~L~~~L-~d~d~~Vra~A~raLG~l~~  176 (410)
T TIGR02270       116 ------RQAEPWLEPLLAASEPPGRAIGLAALGAHRH------------DPGPALEAAL-THEDALVRAAALRALGELPR  176 (410)
T ss_pred             ------hHHHHHHHHHhcCCChHHHHHHHHHHHhhcc------------ChHHHHHHHh-cCCCHHHHHHHHHHHHhhcc
Confidence                  2456788888888889999888877766321            1245677777 68888999999999988765


Q ss_pred             CCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhH
Q 011328          189 GKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN  268 (488)
Q Consensus       189 ~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~  268 (488)
                      .          ..++.|...+.+.++.|+..++.++..+..  +         ..+..+..............+..++..
T Consensus       177 ~----------~a~~~L~~al~d~~~~VR~aA~~al~~lG~--~---------~A~~~l~~~~~~~g~~~~~~l~~~lal  235 (410)
T TIGR02270       177 R----------LSESTLRLYLRDSDPEVRFAALEAGLLAGS--R---------LAWGVCRRFQVLEGGPHRQRLLVLLAV  235 (410)
T ss_pred             c----------cchHHHHHHHcCCCHHHHHHHHHHHHHcCC--H---------hHHHHHHHHHhccCccHHHHHHHHHHh
Confidence            4          456667788888899999999998876633  1         122344443333333344333333333


Q ss_pred             hhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHH
Q 011328          269 IVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAA  348 (488)
Q Consensus       269 l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~  348 (488)
                      .  ..+         ..++.|..+++++ .  ++..++++++.+-.  +         ..++.|+..+.+.  .++..|.
T Consensus       236 ~--~~~---------~a~~~L~~ll~d~-~--vr~~a~~AlG~lg~--p---------~av~~L~~~l~d~--~~aR~A~  288 (410)
T TIGR02270       236 A--GGP---------DAQAWLRELLQAA-A--TRREALRAVGLVGD--V---------EAAPWCLEAMREP--PWARLAG  288 (410)
T ss_pred             C--Cch---------hHHHHHHHHhcCh-h--hHHHHHHHHHHcCC--c---------chHHHHHHHhcCc--HHHHHHH
Confidence            3  111         4677888888876 3  89999999997743  2         3677888877764  3999999


Q ss_pred             HHHHHhcc
Q 011328          349 WAISNATS  356 (488)
Q Consensus       349 ~aL~~l~~  356 (488)
                      .++..++-
T Consensus       289 eA~~~ItG  296 (410)
T TIGR02270       289 EAFSLITG  296 (410)
T ss_pred             HHHHHhhC
Confidence            99999985

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.53  E-value=1.4e-05  Score=84.17  Aligned_cols=390  Identities=14%  Similarity=0.122  Sum_probs=227.7

Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcC-CCchhhHHH
Q 011328           34 AMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIAS-GTSENTRVV  112 (488)
Q Consensus        34 ~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~-~~~~~~~~~  112 (488)
                      .+...+.|.+|..|..++.-|..+...-....-.......+...+.++|.+.+ +-+|..|.+.++-+-+ ++...++.+
T Consensus       822 ~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~d-Ef~QDvAsrGlglVYelgd~~~k~~L  900 (1702)
T KOG0915|consen  822 LLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDND-EFSQDVASRGLGLVYELGDSSLKKSL  900 (1702)
T ss_pred             HHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccH-HHHHHHHhcCceEEEecCCchhHHHH
Confidence            35555668999988876655554444332222222333456688889999988 7888888888776654 334444444


Q ss_pred             HhCCCHHHHHHhhCC---------CCHHHH-------------HHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhccc
Q 011328          113 IDHGAVPIFVRLLSS---------PTDDVR-------------EQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEH  170 (488)
Q Consensus       113 ~~~g~i~~L~~~L~~---------~~~~v~-------------~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~  170 (488)
                      +     ..|+.-|..         ++.++-             -....=|++|+.+-.       ....+-..+++.+.+
T Consensus       901 V-----~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~-------qPdLVYKFM~LAnh~  968 (1702)
T KOG0915|consen  901 V-----DSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLG-------QPDLVYKFMQLANHN  968 (1702)
T ss_pred             H-----HHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcC-------ChHHHHHHHHHhhhh
Confidence            3     344433321         111111             112223444443211       011233445555444


Q ss_pred             ccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHh
Q 011328          171 AKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVEL  250 (488)
Q Consensus       171 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~l  250 (488)
                      -...-+.-|+..+..++..............+|.|.++=-+++..|+.....+-..+..++....+...+ ++++-|+.-
T Consensus       969 A~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~n-eIl~eLL~~ 1047 (1702)
T KOG0915|consen  969 ATWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLN-EILDELLVN 1047 (1702)
T ss_pred             chhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHH-HHHHHHHHh
Confidence            4445566677777777776544455566778888888888899999888777777777766555554444 788888888


Q ss_pred             cCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHH---HHHHHHhcC-----CHHHHHH
Q 011328          251 LRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEAC---WTISNITAG-----NVNQIQA  322 (488)
Q Consensus       251 L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~---~~L~nl~~~-----~~~~~~~  322 (488)
                      +.+..+.+|+++|.+|..+..+.+.....-.-..+...+.+.+++- .+.||..|-   .+++.++..     +...-+.
T Consensus      1048 lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDI-KEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~ 1126 (1702)
T KOG0915|consen 1048 LTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDI-KESVREAADKAARALSKLCVRICDVTNGAKGKE 1126 (1702)
T ss_pred             ccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhcccCCcccHHH
Confidence            9999999999999999999987653211100113455566666665 667776554   445554431     1111222


Q ss_pred             HHHcCChHHHHH--HHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHH-HHHHHHHHHH
Q 011328          323 IIEAGIIGPLVN--LLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTV-CLEGLENILK  399 (488)
Q Consensus       323 l~~~~~l~~L~~--ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~-al~~L~~l~~  399 (488)
                      .++ .++|.|+.  ++ +.-.++|..++.++..++..........+-  .+++.|++....-++.+..+ ++++ .++-.
T Consensus      1127 ~l~-~iLPfLl~~gim-s~v~evr~~si~tl~dl~Kssg~~lkP~~~--~LIp~ll~~~s~lE~~vLnYls~r~-~~~e~ 1201 (1702)
T KOG0915|consen 1127 ALD-IILPFLLDEGIM-SKVNEVRRFSIGTLMDLAKSSGKELKPHFP--KLIPLLLNAYSELEPQVLNYLSLRL-INIET 1201 (1702)
T ss_pred             HHH-HHHHHHhccCcc-cchHHHHHHHHHHHHHHHHhchhhhcchhh--HHHHHHHHHccccchHHHHHHHHhh-hhhHH
Confidence            222 24555543  22 446789999999999999877665555544  37888888888766655443 3333 22211


Q ss_pred             -hhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCC
Q 011328          400 -AGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVE  454 (488)
Q Consensus       400 -~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~  454 (488)
                       .-+..           ....-...-.++.+..+.++-+..|-..-.--+..+.++
T Consensus      1202 ealDt~-----------R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~ 1246 (1702)
T KOG0915|consen 1202 EALDTL-----------RASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRG 1246 (1702)
T ss_pred             HHHHHH-----------HHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhc
Confidence             11100           122223344577777777776666655544444444443

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=98.52  E-value=1.6e-07  Score=87.96  Aligned_cols=302  Identities=14%  Similarity=0.134  Sum_probs=202.8

Q ss_pred             HHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhccc
Q 011328           91 QFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEH  170 (488)
Q Consensus        91 ~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~  170 (488)
                      ...++.+|..++.+-.-.|.-+.+..+.+.|+++|++++..+...+...++|+.-.-.+.+..+.+.+++..+++++ .+
T Consensus       406 ~~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v-~s  484 (743)
T COG5369         406 FVAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLV-MS  484 (743)
T ss_pred             HHHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHh-hc
Confidence            34455667777775566788888999999999999998888888888888998766666888999999999999999 66


Q ss_pred             ccHhHHHHHHHHHHHhhcCC-CCCChhh-hhchHHHHHHhhccCChhHHHHHHHHHHHhccCCch---hHHHHHHh----
Q 011328          171 AKLSMLRNATWTLSNFCRGK-PQPLFEQ-TRPALPALERLIHSNDDEVLTDACWALSYLSDGTND---KIQAVIEA----  241 (488)
Q Consensus       171 ~~~~v~~~a~~~L~~l~~~~-~~~~~~~-~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~---~~~~~~~~----  241 (488)
                      .|..++.+..|.+.++..+. ...+... ..-.+..++.+..++...++..++..+.|+..+...   ..+..++.    
T Consensus       485 KDdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~  564 (743)
T COG5369         485 KDDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRR  564 (743)
T ss_pred             chhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHH
Confidence            78899999999999998776 3333333 356788999999999999999999999999864332   11222222    


Q ss_pred             CCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHh-hCCChHHHHHHhccc---------c-hhhHHHHHHHHHH
Q 011328          242 GVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCII-NHQALPCLLDLLTQN---------Y-KKSIKKEACWTIS  310 (488)
Q Consensus       242 ~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~~~~L~~lL~~~---------~-~~~v~~~a~~~L~  310 (488)
                      -+...+++.+...+|-.....+.+|.+++..++.....+. ....+..+..+|...         + ...+-..-..+..
T Consensus       565 ylfk~l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~v  644 (743)
T COG5369         565 YLFKRLIDKYEENNPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTIV  644 (743)
T ss_pred             HHHHHHHHHHHhcCchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccceeee
Confidence            1445666777777887777889999999887776655544 234444455544211         0 1111112222233


Q ss_pred             HHhcCCHHHHHHHHHcCChHHHHHHHhc----CChhHHHHHHHHHHHhccC--------CCHHHHHHHHHCCChHHHHhh
Q 011328          311 NITAGNVNQIQAIIEAGIIGPLVNLLLN----AEFEIKKEAAWAISNATSG--------GSNEQIKFLVSQGCIKPLCDL  378 (488)
Q Consensus       311 nl~~~~~~~~~~l~~~~~l~~L~~ll~~----~~~~v~~~a~~aL~~l~~~--------~~~~~~~~l~~~~~i~~L~~l  378 (488)
                      ++...+.+..+.+.-.   |.+= ..+.    ++.+.-.+..|...|+.-.        ++.+.++.+.+.|.-+.+..+
T Consensus       645 ~l~e~~d~f~r~~~~~---p~~D-~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtratveR~~iL~~~G~~e~l~k~  720 (743)
T COG5369         645 NLSENSDKFKRLVLTT---PHLD-NMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVTRATVERIQILCANGIREWLVKI  720 (743)
T ss_pred             cccccccccccceecC---CCcc-ccccccCCCchhhhhccceEEEecccCccCCccchhhHHHHHHHHHccHHHHHHHH
Confidence            3332111110000000   1111 1122    1345666677777775421        134677888999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHHH
Q 011328          379 LNCPDPRIVTVCLEGLENI  397 (488)
Q Consensus       379 l~~~~~~v~~~al~~L~~l  397 (488)
                      ..++.+.+++.+-.+|.++
T Consensus       721 q~~~Sl~vrek~~taL~~l  739 (743)
T COG5369         721 QAKDSLIVREKIGTALENL  739 (743)
T ss_pred             hccCcHHHHHHHHHHHHhh
Confidence            9999999999998888765

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]

Probab=98.51  E-value=3.5e-06  Score=64.49  Aligned_cols=155  Identities=10%  Similarity=0.055  Sum_probs=126.7

Q ss_pred             CChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHH
Q 011328          284 QALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQI  363 (488)
Q Consensus       284 ~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~  363 (488)
                      +.+..|++-.+...+.+.+.....-|.|++.. |-+...+.+.++++.++..+...+..+++.++.+|+|++.  ++...
T Consensus        16 ~Ylq~LV~efq~tt~~eakeqv~ANLANFAYD-P~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~--d~~n~   92 (173)
T KOG4646|consen   16 EYLQHLVDEFQTTTNIEAKEQVTANLANFAYD-PINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCL--DKTNA   92 (173)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhhccC-cchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhcc--ChHHH
Confidence            34566777666665888999999999999876 7778888899999999999999999999999999999986  45788


Q ss_pred             HHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHH
Q 011328          364 KFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEK  443 (488)
Q Consensus       364 ~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~~~~~v~~~  443 (488)
                      +.+.+.+.++.++..+.++...++..++.++..+...+..            .++.+-.-..++.++++..+.+-+.+..
T Consensus        93 ~~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt------------~r~ell~p~Vv~~v~r~~~s~s~~~rnL  160 (173)
T KOG4646|consen   93 KFIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERT------------ERDELLSPAVVRTVQRWRESKSHDERNL  160 (173)
T ss_pred             HHHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccc------------hhHHhccHHHHHHHHHHHHHhhHHHHHH
Confidence            9999999999999999999998888888888766554443            3556666667788888887777777888


Q ss_pred             HHHHHHHhcC
Q 011328          444 AVKILETYWV  453 (488)
Q Consensus       444 a~~~l~~~~~  453 (488)
                      |...++.+..
T Consensus       161 a~~fl~~~~~  170 (173)
T KOG4646|consen  161 ASAFLDKHVH  170 (173)
T ss_pred             HHHHHHhhcc
Confidence            8888877654

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.49  E-value=0.00016  Score=70.64  Aligned_cols=304  Identities=15%  Similarity=0.126  Sum_probs=184.8

Q ss_pred             HHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcc-cccHhHHHHHHHHHHHhhcCCCCCChh
Q 011328          118 VPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE-HAKLSMLRNATWTLSNFCRGKPQPLFE  196 (488)
Q Consensus       118 i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~~v~~~a~~~L~~l~~~~~~~~~~  196 (488)
                      +..+.+=|.+.++.....|+.+++|+.+.  +.++.+.     ..+-++|.. ++..-++..++.+|..|.+..  ....
T Consensus       113 in~iknDL~srn~~fv~LAL~~I~niG~r--e~~ea~~-----~DI~KlLvS~~~~~~vkqkaALclL~L~r~s--pDl~  183 (938)
T KOG1077|consen  113 INSIKNDLSSRNPTFVCLALHCIANIGSR--EMAEAFA-----DDIPKLLVSGSSMDYVKQKAALCLLRLFRKS--PDLV  183 (938)
T ss_pred             HHHHHhhhhcCCcHHHHHHHHHHHhhccH--hHHHHhh-----hhhHHHHhCCcchHHHHHHHHHHHHHHHhcC--cccc
Confidence            44555556667889999999999999543  2233322     122345533 234557888888888888774  3444


Q ss_pred             hhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcC-------------CCCcchHhHHH
Q 011328          197 QTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR-------------HPSPSVLIPAL  263 (488)
Q Consensus       197 ~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~-------------~~~~~v~~~a~  263 (488)
                      ...+....++.+|.+.+..+...+...+..++...++.....+- ..+..|..+..             -+.|.++...+
T Consensus       184 ~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~-~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~  262 (938)
T KOG1077|consen  184 NPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLP-LAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLL  262 (938)
T ss_pred             ChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHH-HHHHHHHHHHhhcccchhhceeecCCChHHHHHHH
Confidence            45678899999999999999999999999998776654332111 12222222221             14677888888


Q ss_pred             HHHhHhhcCCchh-hHHHhhCCChHHHHHHhcccc------hhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHH
Q 011328          264 RTVGNIVTGDDMQ-TQCIINHQALPCLLDLLTQNY------KKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLL  336 (488)
Q Consensus       264 ~~L~~l~~~~~~~-~~~~~~~~~~~~L~~lL~~~~------~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll  336 (488)
                      ++|.++-...+.. +..+.  .+++.++...+.+.      ....+...++-..+++.+-+..-..+.  ..+..|..++
T Consensus       263 rlLq~~p~~~D~~~r~~l~--evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~--~~~~~Lg~fl  338 (938)
T KOG1077|consen  263 RLLQIYPTPEDPSTRARLN--EVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLS--RAVNQLGQFL  338 (938)
T ss_pred             HHHHhCCCCCCchHHHHHH--HHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHH--HHHHHHHHHh
Confidence            8888874432222 22111  23333333333110      122334444445566553221112222  3677899999


Q ss_pred             hcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcC-CCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccch
Q 011328          337 LNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLN-CPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNL  415 (488)
Q Consensus       337 ~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~  415 (488)
                      .+....+|--|+..++.++..+..  ...+..  -.+.++..|+ ..|..++..++..|..++..+.             
T Consensus       339 s~rE~NiRYLaLEsm~~L~ss~~s--~davK~--h~d~Ii~sLkterDvSirrravDLLY~mcD~~N-------------  401 (938)
T KOG1077|consen  339 SHRETNIRYLALESMCKLASSEFS--IDAVKK--HQDTIINSLKTERDVSIRRRAVDLLYAMCDVSN-------------  401 (938)
T ss_pred             hcccccchhhhHHHHHHHHhccch--HHHHHH--HHHHHHHHhccccchHHHHHHHHHHHHHhchhh-------------
Confidence            999999999999999999876422  222221  2778888888 7889999999999998887654             


Q ss_pred             HHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCC
Q 011328          416 FAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVE  454 (488)
Q Consensus       416 ~~~~l~~~g~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~  454 (488)
                       ...+. .+.++.|.....+-.+++..+++-+-++|-.+
T Consensus       402 -ak~IV-~elLqYL~tAd~sireeivlKvAILaEKyAtD  438 (938)
T KOG1077|consen  402 -AKQIV-AELLQYLETADYSIREEIVLKVAILAEKYATD  438 (938)
T ss_pred             -HHHHH-HHHHHHHhhcchHHHHHHHHHHHHHHHHhcCC
Confidence             22222 22344444444444566666666666666443

>TIGR02270 conserved hypothetical protein

Probab=98.46  E-value=7.7e-05  Score=71.36  Aligned_cols=244  Identities=18%  Similarity=0.061  Sum_probs=168.4

Q ss_pred             CCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHH
Q 011328           73 GVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRD  152 (488)
Q Consensus        73 ~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~  152 (488)
                      ..++.++..|......+++..++.++...-.  +         ..+..|+..|.+.++.++..+..+|+.+-.  +    
T Consensus        54 ~a~~~L~~aL~~d~~~ev~~~aa~al~~~~~--~---------~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~--~----  116 (410)
T TIGR02270        54 AATELLVSALAEADEPGRVACAALALLAQED--A---------LDLRSVLAVLQAGPEGLCAGIQAALGWLGG--R----  116 (410)
T ss_pred             hHHHHHHHHHhhCCChhHHHHHHHHHhccCC--h---------HHHHHHHHHhcCCCHHHHHHHHHHHhcCCc--h----
Confidence            4677888888543337777766655532221  1         137899999999999999999999987631  1    


Q ss_pred             HHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCc
Q 011328          153 LVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTN  232 (488)
Q Consensus       153 ~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~  232 (488)
                           .....|+.++ .+.++.++..++.++....           ....+.+..++++.++.++..++.+++.+...  
T Consensus       117 -----~a~~~L~~~L-~~~~p~vR~aal~al~~r~-----------~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~--  177 (410)
T TIGR02270       117 -----QAEPWLEPLL-AASEPPGRAIGLAALGAHR-----------HDPGPALEAALTHEDALVRAAALRALGELPRR--  177 (410)
T ss_pred             -----HHHHHHHHHh-cCCChHHHHHHHHHHHhhc-----------cChHHHHHHHhcCCCHHHHHHHHHHHHhhccc--
Confidence                 2356778888 7788889988887776622           12456788889999999999999999987532  


Q ss_pred             hhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHH
Q 011328          233 DKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNI  312 (488)
Q Consensus       233 ~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl  312 (488)
                               ..++.|...+.+.++.||..|+..++.+-.  +         .....+....... ....+..+...+...
T Consensus       178 ---------~a~~~L~~al~d~~~~VR~aA~~al~~lG~--~---------~A~~~l~~~~~~~-g~~~~~~l~~~lal~  236 (410)
T TIGR02270       178 ---------LSESTLRLYLRDSDPEVRFAALEAGLLAGS--R---------LAWGVCRRFQVLE-GGPHRQRLLVLLAVA  236 (410)
T ss_pred             ---------cchHHHHHHHcCCCHHHHHHHHHHHHHcCC--H---------hHHHHHHHHHhcc-CccHHHHHHHHHHhC
Confidence                     345667777899999999999999977633  2         1234455544433 333333333333333


Q ss_pred             hcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHH
Q 011328          313 TAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLE  392 (488)
Q Consensus       313 ~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~  392 (488)
                        +.+         ..++.|..+++++.  ++..++++++.+-..            ..++.|+..++++.  +...|-+
T Consensus       237 --~~~---------~a~~~L~~ll~d~~--vr~~a~~AlG~lg~p------------~av~~L~~~l~d~~--~aR~A~e  289 (410)
T TIGR02270       237 --GGP---------DAQAWLRELLQAAA--TRREALRAVGLVGDV------------EAAPWCLEAMREPP--WARLAGE  289 (410)
T ss_pred             --Cch---------hHHHHHHHHhcChh--hHHHHHHHHHHcCCc------------chHHHHHHHhcCcH--HHHHHHH
Confidence              222         36777888888754  899999999988532            25778888887443  8888999


Q ss_pred             HHHHHHHh
Q 011328          393 GLENILKA  400 (488)
Q Consensus       393 ~L~~l~~~  400 (488)
                      ++..|.-.
T Consensus       290 A~~~ItG~  297 (410)
T TIGR02270       290 AFSLITGM  297 (410)
T ss_pred             HHHHhhCC
Confidence            99888654

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.46  E-value=6.3e-06  Score=79.54  Aligned_cols=253  Identities=15%  Similarity=0.143  Sum_probs=169.5

Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCC------CC
Q 011328          119 PIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK------PQ  192 (488)
Q Consensus       119 ~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~------~~  192 (488)
                      .-+..+..+.+..+|..|+..|..|..... ..+.     .....++++ .+.+..++..|+.+++-...-.      ..
T Consensus       201 ~~l~~~~~~~D~~Vrt~A~eglL~L~eg~k-L~~~-----~Y~~A~~~l-sD~~e~VR~aAvqlv~v~gn~~p~~~e~e~  273 (823)
T KOG2259|consen  201 RGLIYLEHDQDFRVRTHAVEGLLALSEGFK-LSKA-----CYSRAVKHL-SDDYEDVRKAAVQLVSVWGNRCPAPLERES  273 (823)
T ss_pred             HHHHHHhcCCCcchHHHHHHHHHhhccccc-ccHH-----HHHHHHHHh-cchHHHHHHHHHHHHHHHHhcCCCcccchh
Confidence            337777777888888888888888876322 2222     234567777 7778889988866665544332      22


Q ss_pred             CChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcC-CCCcchHhHHHHHHhHhhc
Q 011328          193 PLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR-HPSPSVLIPALRTVGNIVT  271 (488)
Q Consensus       193 ~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~-~~~~~v~~~a~~~L~~l~~  271 (488)
                      ........++..+...+++....|+..|..+|+.+-..+.+.+....+..++..+-..-. ++.+    ..+..=+..++
T Consensus       274 ~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrp----k~l~s~GewSs  349 (823)
T KOG2259|consen  274 EEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRP----KALYSSGEWSS  349 (823)
T ss_pred             hhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccch----HHHHhcCCccc
Confidence            233344678888999999999999999999999988777666665555554442221110 1111    11111111121


Q ss_pred             C-----------CchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCC
Q 011328          272 G-----------DDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAE  340 (488)
Q Consensus       272 ~-----------~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~  340 (488)
                      +           .++....++.+|.-..++.-|.++ -.+||..|+..++.|+..++....     ..+..|+.++++..
T Consensus       350 Gk~~~advpsee~d~~~~siI~sGACGA~VhGlEDE-f~EVR~AAV~Sl~~La~ssP~FA~-----~aldfLvDMfNDE~  423 (823)
T KOG2259|consen  350 GKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDE-FYEVRRAAVASLCSLATSSPGFAV-----RALDFLVDMFNDEI  423 (823)
T ss_pred             CccccccCchhhccccccccccccccceeeeechHH-HHHHHHHHHHHHHHHHcCCCCcHH-----HHHHHHHHHhccHH
Confidence            1           123345577888889999999998 899999999999999986555322     25778999999999


Q ss_pred             hhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHH
Q 011328          341 FEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLE  395 (488)
Q Consensus       341 ~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~  395 (488)
                      ..||..|+.+|..++.+..       ++...++.+...|++..+++++.....|.
T Consensus       424 ~~VRL~ai~aL~~Is~~l~-------i~eeql~~il~~L~D~s~dvRe~l~elL~  471 (823)
T KOG2259|consen  424 EVVRLKAIFALTMISVHLA-------IREEQLRQILESLEDRSVDVREALRELLK  471 (823)
T ss_pred             HHHHHHHHHHHHHHHHHhe-------ecHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            9999999999999986531       12234666667777777777766555544

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=98.46  E-value=2.7e-05  Score=73.58  Aligned_cols=315  Identities=18%  Similarity=0.175  Sum_probs=197.8

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCC-ChhHHHHHHHHHHHhcCCCchhhH
Q 011328           32 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDD-FPQLQFEAAWALTNIASGTSENTR  110 (488)
Q Consensus        32 i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~-~~~v~~~a~~~L~~l~~~~~~~~~  110 (488)
                      .+.+...+-+++.+++..+.++++.++.+  ....+.+.+.++--.++.-|..++ +..-|++|++.+..+.... +..+
T Consensus        27 ~~~i~~~lL~~~~~vraa~yRilRy~i~d--~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~-~~~~  103 (371)
T PF14664_consen   27 GERIQCMLLSDSKEVRAAGYRILRYLISD--EESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIK-KGPK  103 (371)
T ss_pred             HHHHHHHHCCCcHHHHHHHHHHHHHHHcC--HHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhc-CCcc
Confidence            34444445566699999999999998875  466777888777667777775543 3567899999998887732 2222


Q ss_pred             HHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCC
Q 011328          111 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK  190 (488)
Q Consensus       111 ~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~  190 (488)
                      . +..|++..++.+.+++++.++..|+.+|+.++-.+|+   .+...|++..+++.+.+ ...++....+.++..+...+
T Consensus       104 ~-~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~---lv~~~gG~~~L~~~l~d-~~~~~~~~l~~~lL~lLd~p  178 (371)
T PF14664_consen  104 E-IPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPE---LVAECGGIRVLLRALID-GSFSISESLLDTLLYLLDSP  178 (371)
T ss_pred             c-CCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHH---HHHHcCCHHHHHHHHHh-ccHhHHHHHHHHHHHHhCCc
Confidence            1 3557899999999999999999999999999988775   68889999999999954 44458888889999998887


Q ss_pred             CCCChhhhhchHHHHHHhhcc-------CCh--hHHHHHHHHHHHhccCCchhHHHHHHh-CCHHHHHHhcCCCCcchHh
Q 011328          191 PQPLFEQTRPALPALERLIHS-------NDD--EVLTDACWALSYLSDGTNDKIQAVIEA-GVCPRLVELLRHPSPSVLI  260 (488)
Q Consensus       191 ~~~~~~~~~~~~~~l~~ll~~-------~~~--~v~~~al~~L~~l~~~~~~~~~~~~~~-~~l~~L~~lL~~~~~~v~~  260 (488)
                      .........--+..++.-+.+       ++.  +....+..++..+...=+.......+. .++..++..|..+.+++|.
T Consensus       179 ~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir~  258 (371)
T PF14664_consen  179 RTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIRK  258 (371)
T ss_pred             chhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHHHH
Confidence            555444332233333332221       122  344555555655554332222211111 5688899999999999999


Q ss_pred             HHHHHHhHhhcCCch-hhHHHh------hCCChHHHHHHhc--ccchhhHHHHHHHHHHHHhcCC-HHHHHHHHHcCChH
Q 011328          261 PALRTVGNIVTGDDM-QTQCII------NHQALPCLLDLLT--QNYKKSIKKEACWTISNITAGN-VNQIQAIIEAGIIG  330 (488)
Q Consensus       261 ~a~~~L~~l~~~~~~-~~~~~~------~~~~~~~L~~lL~--~~~~~~v~~~a~~~L~nl~~~~-~~~~~~l~~~~~l~  330 (488)
                      ..+..+..+..-... ......      ..+-...-.++-.  .+ .......-..--.++..+. .-....+++.|+++
T Consensus       259 ~Ildll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e-~~~~~~~~~~~~~~l~~~y~aLll~ili~~gL~~  337 (371)
T PF14664_consen  259 AILDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAE-AKSILPHRSSKRPNLVNHYLALLLAILIEAGLLE  337 (371)
T ss_pred             HHHHHHHHHHCCCCCCcccchhhcccccccccccchhhhcccccc-cccccCccccccccHHHHHHHHHHHHHHHcChHH
Confidence            999998888764321 111111      1111100000000  00 0000000000011121110 11223456899999


Q ss_pred             HHHHHHhcC-ChhHHHHHHHHHHHhc
Q 011328          331 PLVNLLLNA-EFEIKKEAAWAISNAT  355 (488)
Q Consensus       331 ~L~~ll~~~-~~~v~~~a~~aL~~l~  355 (488)
                      .|+++..+. +..+..+|...|+.+.
T Consensus       338 ~L~~li~~~~d~~l~~KAtlLL~elL  363 (371)
T PF14664_consen  338 ALVELIESSEDSSLSRKATLLLGELL  363 (371)
T ss_pred             HHHHHHhcCCCchHHHHHHHHHHHHH
Confidence            999999998 8889999999888775

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=98.42  E-value=1.6e-05  Score=81.93  Aligned_cols=268  Identities=15%  Similarity=0.144  Sum_probs=178.5

Q ss_pred             HHHHHHHhcC-CCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCC---Cch
Q 011328           32 LPAMVAGVWS-DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASG---TSE  107 (488)
Q Consensus        32 i~~l~~~L~s-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~---~~~  107 (488)
                      ++.+..++++ ...+.+..|+..|..+...-+    ++..-..++|.++.++.++. .+||..|+.+|..+...   -+.
T Consensus       424 vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~----de~~LDRVlPY~v~l~~Ds~-a~Vra~Al~Tlt~~L~~Vr~~~~  498 (1431)
T KOG1240|consen  424 VSVLTSCIRALKTIQTKLAALELLQELSTYID----DEVKLDRVLPYFVHLLMDSE-ADVRATALETLTELLALVRDIPP  498 (1431)
T ss_pred             HHHHHHHHHhhhcchhHHHHHHHHHHHhhhcc----hHHHHhhhHHHHHHHhcCch-HHHHHHHHHHHHHHHhhccCCCc
Confidence            4556666665 456778888888888765442    22333468999999999999 99999999998887651   222


Q ss_pred             hhHHHHhCCCHHHHHHhhCC-CCHHHHHHHHHHHhhhhC------------------CCchh-----------HHHHHhc
Q 011328          108 NTRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAG------------------DSPKC-----------RDLVLSN  157 (488)
Q Consensus       108 ~~~~~~~~g~i~~L~~~L~~-~~~~v~~~a~~~L~~l~~------------------~~~~~-----------~~~~~~~  157 (488)
                      .-..++..-++|.|-.++.+ ....+|-.-+..|+.|+.                  +.++.           ...+.  
T Consensus       499 ~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~--  576 (1431)
T KOG1240|consen  499 SDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALH--  576 (1431)
T ss_pred             ccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHH--
Confidence            23334445678888888877 445566555566665542                  11111           00010  


Q ss_pred             CChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHH
Q 011328          158 GALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQA  237 (488)
Q Consensus       158 ~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~  237 (488)
                      ..++.++.-|..++++-|++..+..|.-||....  +.....-+++.|+.+|++.|+.+|..-...|.-++-.-..+   
T Consensus       577 ~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFG--k~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~r---  651 (1431)
T KOG1240|consen  577 HTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFG--KEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWR---  651 (1431)
T ss_pred             HHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhh--hcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeee---
Confidence            1233333222255566777777777777775421  11122346788999999999999988888887666432211   


Q ss_pred             HHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhc
Q 011328          238 VIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA  314 (488)
Q Consensus       238 ~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~  314 (488)
                      -++..++|.|.+.|.+.++.|...|+.++..|+...--....+.  .+++....+|-++ +.-+|..++..|...+.
T Consensus       652 s~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~--~i~~~v~PlL~hP-N~WIR~~~~~iI~~~~~  725 (1431)
T KOG1240|consen  652 SVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVK--DILQDVLPLLCHP-NLWIRRAVLGIIAAIAR  725 (1431)
T ss_pred             eHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHH--HHHHhhhhheeCc-hHHHHHHHHHHHHHHHh
Confidence            23447789999999999999999999999999874332222222  4677788888999 99999999999988776

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=98.38  E-value=2e-05  Score=69.54  Aligned_cols=235  Identities=14%  Similarity=0.166  Sum_probs=157.8

Q ss_pred             HHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhC-CCHHHHHHhhCC--CCHHHHHHHHHHHhhhhCCCchhHH
Q 011328           76 PRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDH-GAVPIFVRLLSS--PTDDVREQAVWALGNVAGDSPKCRD  152 (488)
Q Consensus        76 ~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-g~i~~L~~~L~~--~~~~v~~~a~~~L~~l~~~~~~~~~  152 (488)
                      +.|-++++.-+ +-.+.-|++++.++.. .++.|...... ..-..+...+++  +..+++-+.+.+++.++..+ .+.+
T Consensus       152 eyLgkl~Q~i~-~lTrlfav~cl~~l~~-~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~-~~aq  228 (432)
T COG5231         152 EYLGKLSQLID-FLTRLFAVSCLSNLEF-DVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSK-ECAQ  228 (432)
T ss_pred             HHHHHHHHHHH-HHHHHHHHHHHhhhhh-hHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCH-HHHH
Confidence            33344555555 6678889999999998 78888877643 344566677766  67889999999999987554 3443


Q ss_pred             HHHh-cCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCCh--hhhhc-hHHHHHHhhcc--CChhHHHHHHHHHHH
Q 011328          153 LVLS-NGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLF--EQTRP-ALPALERLIHS--NDDEVLTDACWALSY  226 (488)
Q Consensus       153 ~~~~-~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~--~~~~~-~~~~l~~ll~~--~~~~v~~~al~~L~~  226 (488)
                      .+-. -..+.-++.+......+.+.+-++..+.+++...+....  ....+ +.+..--+...  .|.+++...-..=..
T Consensus       229 di~K~~dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~  308 (432)
T COG5231         229 DIDKMDDLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSR  308 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHH
Confidence            3222 234666777776666788999999999999985433222  22233 44433333332  245544333222222


Q ss_pred             hccCC----------------------c--------hhHHHHHHh--CCHHHHHHhcCCCCcc-hHhHHHHHHhHhhcCC
Q 011328          227 LSDGT----------------------N--------DKIQAVIEA--GVCPRLVELLRHPSPS-VLIPALRTVGNIVTGD  273 (488)
Q Consensus       227 l~~~~----------------------~--------~~~~~~~~~--~~l~~L~~lL~~~~~~-v~~~a~~~L~~l~~~~  273 (488)
                      +..+.                      +        ...+.+.+.  .++..|.++++.+.+. ...-||.-++.+.+..
T Consensus       309 l~~~~k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~  388 (432)
T COG5231         309 LVQNTKKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRAS  388 (432)
T ss_pred             HHhhhhhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhC
Confidence            21111                      0        111223222  4788889999887766 5567888999999999


Q ss_pred             chhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhc
Q 011328          274 DMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA  314 (488)
Q Consensus       274 ~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~  314 (488)
                      |+....+.+.|+-+.++.++.++ +++||.+|+.++..+..
T Consensus       389 PE~~~vl~Kyg~k~~im~L~nh~-d~~VkfeAl~a~q~~i~  428 (432)
T COG5231         389 PEINAVLSKYGVKEIIMNLINHD-DDDVKFEALQALQTCIS  428 (432)
T ss_pred             chHHHHHHHhhhHHHHHHHhcCC-CchhhHHHHHHHHHHHh
Confidence            99999899999999999999999 99999999999887654

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=98.38  E-value=0.00028  Score=66.92  Aligned_cols=251  Identities=27%  Similarity=0.321  Sum_probs=175.6

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh
Q 011328           30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT  109 (488)
Q Consensus        30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~  109 (488)
                      ..++.+++.+.++++.++..+++.+..+-..            ..++.+.+++.+.+ +.+|..|+.+|+.+-.      
T Consensus        43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~~------------~av~~l~~~l~d~~-~~vr~~a~~aLg~~~~------  103 (335)
T COG1413          43 EAADELLKLLEDEDLLVRLSAAVALGELGSE------------EAVPLLRELLSDED-PRVRDAAADALGELGD------  103 (335)
T ss_pred             hhHHHHHHHHcCCCHHHHHHHHHHHhhhchH------------HHHHHHHHHhcCCC-HHHHHHHHHHHHccCC------
Confidence            4678899999999999999999997775432            37899999999999 8999999998887764      


Q ss_pred             HHHHhCCCHHHHHHhhC-CCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccc-----------cHhHHH
Q 011328          110 RVVIDHGAVPIFVRLLS-SPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHA-----------KLSMLR  177 (488)
Q Consensus       110 ~~~~~~g~i~~L~~~L~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~-----------~~~v~~  177 (488)
                           ...++.++.++. +++..+|..+.++|+.+-..           ..+.+++..+.+..           ...++.
T Consensus       104 -----~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~-----------~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~  167 (335)
T COG1413         104 -----PEAVPPLVELLENDENEGVRAAAARALGKLGDE-----------RALDPLLEALQDEDSGSAAAALDAALLDVRA  167 (335)
T ss_pred             -----hhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCch-----------hhhHHHHHHhccchhhhhhhhccchHHHHHH
Confidence                 134788899888 59999999999999998422           12566777773322           013555


Q ss_pred             HHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcc
Q 011328          178 NATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPS  257 (488)
Q Consensus       178 ~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~  257 (488)
                      .+...+..+-..          ..++.+...+.+.+..++..+..+++.+....         ..+...+...+.+++..
T Consensus       168 ~a~~~l~~~~~~----------~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~~~~  228 (335)
T COG1413         168 AAAEALGELGDP----------EAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDESLE  228 (335)
T ss_pred             HHHHHHHHcCCh----------hhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCCCHH
Confidence            666666655433          46677888888888888888888888876554         24456777888888888


Q ss_pred             hHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh
Q 011328          258 VLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLL  337 (488)
Q Consensus       258 v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~  337 (488)
                      ++..++..++.+-..           .....+...+... +..++..+...+...  ...         .....+...+.
T Consensus       229 vr~~~~~~l~~~~~~-----------~~~~~l~~~l~~~-~~~~~~~~~~~~~~~--~~~---------~~~~~l~~~~~  285 (335)
T COG1413         229 VRKAALLALGEIGDE-----------EAVDALAKALEDE-DVILALLAAAALGAL--DLA---------EAALPLLLLLI  285 (335)
T ss_pred             HHHHHHHHhcccCcc-----------hhHHHHHHHHhcc-chHHHHHHHHHhccc--Cch---------hhHHHHHHHhh
Confidence            888888888776441           2345677777766 555555555444411  101         12344455556


Q ss_pred             cCChhHHHHHHHHHHHhccC
Q 011328          338 NAEFEIKKEAAWAISNATSG  357 (488)
Q Consensus       338 ~~~~~v~~~a~~aL~~l~~~  357 (488)
                      +.+..++..+..++......
T Consensus       286 ~~~~~~~~~~~~~l~~~~~~  305 (335)
T COG1413         286 DEANAVRLEAALALGQIGQE  305 (335)
T ss_pred             cchhhHHHHHHHHHHhhccc
Confidence            66677777777777777543

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=98.36  E-value=0.00016  Score=69.13  Aligned_cols=350  Identities=13%  Similarity=0.109  Sum_probs=200.5

Q ss_pred             CCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCC---hhHHHHHHHHHHHhcCCCchhhHHHHhCCCH
Q 011328           42 DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDF---PQLQFEAAWALTNIASGTSENTRVVIDHGAV  118 (488)
Q Consensus        42 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~---~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i  118 (488)
                      +++--|+.|+..|.++-..      +.+.    .-.+++.+..+.+   .-......++...+...+++.+.++     .
T Consensus       202 ~~~isqYHalGlLyq~kr~------dkma----~lklv~hf~~n~smknq~a~V~lvr~~~~ll~~n~q~~~q~-----r  266 (898)
T COG5240         202 GNPISQYHALGLLYQSKRT------DKMA----QLKLVEHFRGNASMKNQLAGVLLVRATVELLKENSQALLQL-----R  266 (898)
T ss_pred             CChHHHHHHHHHHHHHhcc------cHHH----HHHHHHHhhcccccccchhheehHHHHHHHHHhChHHHHHH-----H
Confidence            3566777888777774322      1122    2234444443321   2223334455666666666666655     4


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhh
Q 011328          119 PIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQT  198 (488)
Q Consensus       119 ~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~  198 (488)
                      |.|-..+++.-+-+.-.+++.++.++..+-.  ..... ..+..|-.+| .++....+-.|...|..++...|.......
T Consensus       267 pfL~~wls~k~emV~lE~Ar~v~~~~~~nv~--~~~~~-~~vs~L~~fL-~s~rv~~rFsA~Riln~lam~~P~kv~vcN  342 (898)
T COG5240         267 PFLNSWLSDKFEMVFLEAARAVCALSEENVG--SQFVD-QTVSSLRTFL-KSTRVVLRFSAMRILNQLAMKYPQKVSVCN  342 (898)
T ss_pred             HHHHHHhcCcchhhhHHHHHHHHHHHHhccC--HHHHH-HHHHHHHHHH-hcchHHHHHHHHHHHHHHHhhCCceeeecC
Confidence            6777788887788888888888888755421  11111 1344555555 677778889999999999988765544333


Q ss_pred             hchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhH
Q 011328          199 RPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQ  278 (488)
Q Consensus       199 ~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~  278 (488)
                          +-+-.++.+.+..+..+|+.+|..-  +.++.+..++     ..+...+.+-++..+.-+..++..++-..+....
T Consensus       343 ----~evEsLIsd~Nr~IstyAITtLLKT--Gt~e~idrLv-----~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~  411 (898)
T COG5240         343 ----KEVESLISDENRTISTYAITTLLKT--GTEETIDRLV-----NLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKL  411 (898)
T ss_pred             ----hhHHHHhhcccccchHHHHHHHHHc--CchhhHHHHH-----HHHHHHHHhhccCceEEeHHHHHHHHhhCcHHHH
Confidence                3345566777777777777666543  3333344333     3333444443334444445555555544443332


Q ss_pred             HHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCC
Q 011328          279 CIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG  358 (488)
Q Consensus       279 ~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~  358 (488)
                           ..+..|...|......+.++.+..++.......|+....     ++..|+..+.+...  -+-+.+.|+-+-..+
T Consensus       412 -----s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skEr-----aLe~LC~fIEDcey--~~I~vrIL~iLG~Eg  479 (898)
T COG5240         412 -----SYLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKER-----ALEVLCTFIEDCEY--HQITVRILGILGREG  479 (898)
T ss_pred             -----HHHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHHH-----HHHHHHHHHhhcch--hHHHHHHHHHhcccC
Confidence                 234556665544437788888888888888765554433     34557777766532  234455555554332


Q ss_pred             CHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCH
Q 011328          359 SNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNT  438 (488)
Q Consensus       359 ~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~~~~  438 (488)
                      ...-.+    ...+..+.+-+--.+.-+|..|+.+|..+.-..+..               +........+.++.++.++
T Consensus       480 P~a~~P----~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~---------------~~~~sv~~~lkRclnD~Dd  540 (898)
T COG5240         480 PRAKTP----GKYVRHIYNRLILENNIVRSAAVQALSKFALNISDV---------------VSPQSVENALKRCLNDQDD  540 (898)
T ss_pred             CCCCCc----chHHHHHHHHHHHhhhHHHHHHHHHHHHhccCcccc---------------ccHHHHHHHHHHHhhcccH
Confidence            110000    012444444444456678888888888774322211               1111123557788899999


Q ss_pred             HHHHHHHHHHHHhc
Q 011328          439 EIYEKAVKILETYW  452 (488)
Q Consensus       439 ~v~~~a~~~l~~~~  452 (488)
                      +|+++|...++.+-
T Consensus       541 eVRdrAsf~l~~~~  554 (898)
T COG5240         541 EVRDRASFLLRNMR  554 (898)
T ss_pred             HHHHHHHHHHHhhh
Confidence            99999998888764

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=98.34  E-value=0.0015  Score=63.61  Aligned_cols=350  Identities=15%  Similarity=0.139  Sum_probs=201.0

Q ss_pred             HHHHHHHhcCCCH---HHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchh
Q 011328           32 LPAMVAGVWSDDR---NIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN  108 (488)
Q Consensus        32 i~~l~~~L~s~~~---~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~  108 (488)
                      +|.++..|.+.+.   ......+.+|.+++...  +....+.. .++..+-...+...+.+....++.++..+.....+.
T Consensus         1 ~p~ll~~Lpd~~~~~~~~~~~~L~~l~~ls~~~--~i~~~~~~-~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~   77 (415)
T PF12460_consen    1 LPALLALLPDSDSSTDSNYERILEALAALSTSP--QILETLSI-RLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQED   77 (415)
T ss_pred             CchHHhhCCCCCCcchhHHHHHHHHHHHHHCCh--hHHHHHHH-HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhcccc
Confidence            3678888876544   55667888888876532  33333322 455555555554444667777788888876633222


Q ss_pred             h-----HHHHhCCCHHHHHHhhCC-----C--CHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhc--------
Q 011328          109 T-----RVVIDHGAVPIFVRLLSS-----P--TDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN--------  168 (488)
Q Consensus       109 ~-----~~~~~~g~i~~L~~~L~~-----~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~--------  168 (488)
                      .     ....+..+++.+.+....     .  ++.+...+..++..+++.-+.-+..-    .+..+..+..        
T Consensus        78 ~~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~----~~~~~~~lf~~~~~~~~~  153 (415)
T PF12460_consen   78 KQFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQE----ILDELYSLFLSPKSFSPF  153 (415)
T ss_pred             cccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHH----HHHHHHHHHccccccCCC
Confidence            2     233344477777776532     2  25666666666666665443222211    1333333331        


Q ss_pred             --ccc-cHhHHHHHHHHHHH-hhcCCCCCChhhhhchHHHHHHhhcc-CChhHHHHHHHHHHHhccCC--chhHHHHHHh
Q 011328          169 --EHA-KLSMLRNATWTLSN-FCRGKPQPLFEQTRPALPALERLIHS-NDDEVLTDACWALSYLSDGT--NDKIQAVIEA  241 (488)
Q Consensus       169 --~~~-~~~v~~~a~~~L~~-l~~~~~~~~~~~~~~~~~~l~~ll~~-~~~~v~~~al~~L~~l~~~~--~~~~~~~~~~  241 (488)
                        ... ...........+.. ++.-++..........+..++.+..+ .++..+..++.+++.++..-  ++..+     
T Consensus       154 ~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~-----  228 (415)
T PF12460_consen  154 QPSSSTISEQQSRLVILFSAILCSLRKDVSLPDLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLD-----  228 (415)
T ss_pred             CccccccccccccHHHHHHHHHHcCCcccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHH-----
Confidence              000 00111222222222 22222222222444577777777654 46888899999999888552  22222     


Q ss_pred             CCHHHHHHhc-CCCCcchHhHHHHHH----hHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCC
Q 011328          242 GVCPRLVELL-RHPSPSVLIPALRTV----GNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGN  316 (488)
Q Consensus       242 ~~l~~L~~lL-~~~~~~v~~~a~~~L----~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~  316 (488)
                      +++..+..-. ....+..+..++.++    ..+...+.....     ..+..++.++.+   +++...++..+.-+....
T Consensus       229 ~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~-----~~~~~L~~lL~~---~~~g~~aA~~f~il~~d~  300 (415)
T PF12460_consen  229 EFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLAT-----ELLDKLLELLSS---PELGQQAAKAFGILLSDS  300 (415)
T ss_pred             HHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHH-----HHHHHHHHHhCC---hhhHHHHHHHHhhHhcCc
Confidence            3333343333 233344444444444    333332332222     356678888876   456778888888777652


Q ss_pred             HH--------HHHHHHHc----CChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCH
Q 011328          317 VN--------QIQAIIEA----GIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDP  384 (488)
Q Consensus       317 ~~--------~~~~l~~~----~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~  384 (488)
                      ++        .++.+.+.    .++|.|++-....+...|...+.||.++..+-.......=. ..+++.|.+.|+.++.
T Consensus       301 ~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l-~~LlPLLlqsL~~~~~  379 (415)
T PF12460_consen  301 DDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPEL-PTLLPLLLQSLSLPDA  379 (415)
T ss_pred             HHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHH-HHHHHHHHHHhCCCCH
Confidence            22        22333332    36788888888777779999999999999876544322211 2589999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhh
Q 011328          385 RIVTVCLEGLENILKAGE  402 (488)
Q Consensus       385 ~v~~~al~~L~~l~~~~~  402 (488)
                      +++..++.+|..++...+
T Consensus       380 ~v~~s~L~tL~~~l~~~~  397 (415)
T PF12460_consen  380 DVLLSSLETLKMILEEAP  397 (415)
T ss_pred             HHHHHHHHHHHHHHHcCH
Confidence            999999999999987664

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]

Probab=98.33  E-value=0.00036  Score=71.20  Aligned_cols=384  Identities=16%  Similarity=0.143  Sum_probs=230.8

Q ss_pred             HHHHHhcCCC-HHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHH
Q 011328           34 AMVAGVWSDD-RNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVV  112 (488)
Q Consensus        34 ~l~~~L~s~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~  112 (488)
                      .++..+..++ .+-+..++..+.......    ....++....+..-++.++.. +.++..++.-+++++..-+.   ..
T Consensus       201 ~l~~~l~~~d~~~sr~sacglf~~~~~~~----~~~~vk~elr~~~~~lc~d~~-~~Vr~~~a~~l~~~a~~~~~---~~  272 (759)
T KOG0211|consen  201 PLLKRLATGDWFQSRLSACGLFGKLYVSL----PDDAVKRELRPIVQSLCQDDT-PMVRRAVASNLGNIAKVLES---EI  272 (759)
T ss_pred             HHHHHccchhhhhcchhhhhhhHHhccCC----ChHHHHHHHHHHHHhhccccc-hhhHHHHHhhhHHHHHHHHH---HH
Confidence            3444444332 233445555555544332    113344455566666777777 89999999999999873333   56


Q ss_pred             HhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCC-C
Q 011328          113 IDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-P  191 (488)
Q Consensus       113 ~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~-~  191 (488)
                      ...++++.+..+..++...+|..|...+.++...-..-.  -......+.+++.. .+.+..++.......+.+...- +
T Consensus       273 ~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~--d~~~~~~~~l~~~~-~d~~~~v~~~~~~~~~~L~~~~~~  349 (759)
T KOG0211|consen  273 VKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDD--DVVKSLTESLVQAV-EDGSWRVSYMVADKFSELSSAVGP  349 (759)
T ss_pred             HHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCch--hhhhhhhHHHHHHh-cChhHHHHHHHhhhhhhHHHHhcc
Confidence            677889999999999999999999998888763221100  11122344555555 4444444443333333332211 0


Q ss_pred             --------------------------------------CC--ChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCC
Q 011328          192 --------------------------------------QP--LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGT  231 (488)
Q Consensus       192 --------------------------------------~~--~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~  231 (488)
                                                            ..  .......++|.+-.+..+.+..++...+..+..+....
T Consensus       350 ~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~  429 (759)
T KOG0211|consen  350 SATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPIL  429 (759)
T ss_pred             ccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccC
Confidence                                                  00  00111233445555555555555555555555544322


Q ss_pred             chhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHH
Q 011328          232 NDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISN  311 (488)
Q Consensus       232 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~n  311 (488)
                      +.  ...+ ....+.+...+++..+.++....+.+..+-..++...........++.+..+-... .++++.+..+.+-.
T Consensus       430 ~k--~~ti-~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~-~wRvr~ail~~ip~  505 (759)
T KOG0211|consen  430 PK--ERTI-SELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDL-LWRVRLAILEYIPQ  505 (759)
T ss_pred             Cc--CcCc-cccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccch-hHHHHHHHHHHHHH
Confidence            20  0011 13456666677777888888887776665554444444444556777777777777 78899999988888


Q ss_pred             HhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHH
Q 011328          312 ITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCL  391 (488)
Q Consensus       312 l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al  391 (488)
                      ++....   ..+.....-+.+...+.+....+++.|+..+..++..-+.+...    ...++.+.....+++...|...+
T Consensus       506 la~q~~---~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~~w~~----~~~i~k~L~~~~q~~y~~R~t~l  578 (759)
T KOG0211|consen  506 LALQLG---VEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFGSEWAR----LEEIPKLLAMDLQDNYLVRMTTL  578 (759)
T ss_pred             HHHhhh---hHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCcchhH----HHhhHHHHHHhcCcccchhhHHH
Confidence            876322   22333334445555566667889999999999888644322211    13466777777766788888888


Q ss_pred             HHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCC
Q 011328          392 EGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVE  454 (488)
Q Consensus       392 ~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~  454 (488)
                      .++..+.......               +-....+..+.++.+++.++|+-.+++.+..+...
T Consensus       579 ~si~~la~v~g~e---------------i~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~  626 (759)
T KOG0211|consen  579 FSIHELAEVLGQE---------------ITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKL  626 (759)
T ss_pred             HHHHHHHHHhccH---------------HHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhh
Confidence            8888776654322               22233467788899999999999999888776654

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=98.26  E-value=5.3e-05  Score=78.19  Aligned_cols=295  Identities=15%  Similarity=0.130  Sum_probs=190.8

Q ss_pred             CHHHHHHhhCC-CCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCC----C
Q 011328          117 AVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK----P  191 (488)
Q Consensus       117 ~i~~L~~~L~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~----~  191 (488)
                      +++.+...+++ ...+.+..|+..|..++.....  +.. -..+++.++.++ .++...|+..|+.+|..+...-    +
T Consensus       423 ~vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~d--e~~-LDRVlPY~v~l~-~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~  498 (1431)
T KOG1240|consen  423 FVSVLTSCIRALKTIQTKLAALELLQELSTYIDD--EVK-LDRVLPYFVHLL-MDSEADVRATALETLTELLALVRDIPP  498 (1431)
T ss_pred             eHHHHHHHHHhhhcchhHHHHHHHHHHHhhhcch--HHH-HhhhHHHHHHHh-cCchHHHHHHHHHHHHHHHhhccCCCc
Confidence            34556666665 6678888999999998865432  111 124788888888 8888999999999998776533    3


Q ss_pred             CCChhhhhchHHHHHHhhcc-CChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhh
Q 011328          192 QPLFEQTRPALPALERLIHS-NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIV  270 (488)
Q Consensus       192 ~~~~~~~~~~~~~l~~ll~~-~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~  270 (488)
                      ........-++|.|..++.+ ....++..-+.+|..++....    .+.+...-.....+++.++.+.       .  --
T Consensus       499 ~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~----rFle~~q~~~~~g~~n~~nset-------~--~~  565 (1431)
T KOG1240|consen  499 SDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAY----RFLELTQELRQAGMLNDPNSET-------A--PE  565 (1431)
T ss_pred             ccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHH----HHHHHHHHHHhcccccCccccc-------c--cc
Confidence            44455667788999999887 566777777778887764321    1222111111222234433330       0  00


Q ss_pred             cCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhc--CCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHH
Q 011328          271 TGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA--GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAA  348 (488)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~--~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~  348 (488)
                      .......+.+.+ .+-+....++.++ .+-||+..+..|.-|+.  +...     -+.-+++.|+..|++.|+.+|..-.
T Consensus       566 ~~~~~~~~~L~~-~V~~~v~sLlsd~-~~~Vkr~Lle~i~~LC~FFGk~k-----sND~iLshLiTfLNDkDw~LR~aFf  638 (1431)
T KOG1240|consen  566 QNYNTELQALHH-TVEQMVSSLLSDS-PPIVKRALLESIIPLCVFFGKEK-----SNDVILSHLITFLNDKDWRLRGAFF  638 (1431)
T ss_pred             cccchHHHHHHH-HHHHHHHHHHcCC-chHHHHHHHHHHHHHHHHhhhcc-----cccchHHHHHHHhcCccHHHHHHHH
Confidence            111122222222 4556677788777 78899888888887775  2111     0123688999999999999998777


Q ss_pred             HHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHH
Q 011328          349 WAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEK  428 (488)
Q Consensus       349 ~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~  428 (488)
                      ..+.-++..-....    .+...++.|.+-|.++++.|+..|+.++..+++.+--.+.            ..  ...++.
T Consensus       639 dsI~gvsi~VG~rs----~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~------------~v--~~i~~~  700 (1431)
T KOG1240|consen  639 DSIVGVSIFVGWRS----VSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKP------------AV--KDILQD  700 (1431)
T ss_pred             hhccceEEEEeeee----HHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchH------------HH--HHHHHh
Confidence            77765553222211    2335789999999999999999999999999988653221            11  112445


Q ss_pred             HHHhhcCCCHHHHHHHHHHHHHhcC
Q 011328          429 IENLQSHDNTEIYEKAVKILETYWV  453 (488)
Q Consensus       429 L~~l~~~~~~~v~~~a~~~l~~~~~  453 (488)
                      ..-++-++|.=|++.+..++-...+
T Consensus       701 v~PlL~hPN~WIR~~~~~iI~~~~~  725 (1431)
T KOG1240|consen  701 VLPLLCHPNLWIRRAVLGIIAAIAR  725 (1431)
T ss_pred             hhhheeCchHHHHHHHHHHHHHHHh
Confidence            5667889999999998888755443

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.25  E-value=0.00062  Score=72.35  Aligned_cols=316  Identities=17%  Similarity=0.139  Sum_probs=183.8

Q ss_pred             HHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHH
Q 011328           44 RNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVR  123 (488)
Q Consensus        44 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~  123 (488)
                      ..-+.-|+.-+..+++.........+  ...+|.|.+.=-+++ ..+|.....+...+..++....+...+ .++.-|+.
T Consensus       971 wnSk~GaAfGf~~i~~~a~~kl~p~l--~kLIPrLyRY~yDP~-~~Vq~aM~sIW~~Li~D~k~~vd~y~n-eIl~eLL~ 1046 (1702)
T KOG0915|consen  971 WNSKKGAAFGFGAIAKQAGEKLEPYL--KKLIPRLYRYQYDPD-KKVQDAMTSIWNALITDSKKVVDEYLN-EILDELLV 1046 (1702)
T ss_pred             hhcccchhhchHHHHHHHHHhhhhHH--HHhhHHHhhhccCCc-HHHHHHHHHHHHHhccChHHHHHHHHH-HHHHHHHH
Confidence            44455567777777665422212211  247788888877888 899998888888888755555554443 56788888


Q ss_pred             hhCCCCHHHHHHHHHHHhhhhCCCchh--HHHHHhcCChHHHHHHhcccccHhHHHH---HHHHHHHhhcCC-----CCC
Q 011328          124 LLSSPTDDVREQAVWALGNVAGDSPKC--RDLVLSNGALMPLLAQFNEHAKLSMLRN---ATWTLSNFCRGK-----PQP  193 (488)
Q Consensus       124 ~L~~~~~~v~~~a~~~L~~l~~~~~~~--~~~~~~~~~l~~L~~ll~~~~~~~v~~~---a~~~L~~l~~~~-----~~~  193 (488)
                      -+.+....+|+.++.+|..|..+.+.-  .+.+.  .....+++.+ ++-.+.+|..   ++.+|+.+|-..     +..
T Consensus      1047 ~lt~kewRVReasclAL~dLl~g~~~~~~~e~lp--elw~~~fRvm-DDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~ 1123 (1702)
T KOG0915|consen 1047 NLTSKEWRVREASCLALADLLQGRPFDQVKEKLP--ELWEAAFRVM-DDIKESVREAADKAARALSKLCVRICDVTNGAK 1123 (1702)
T ss_pred             hccchhHHHHHHHHHHHHHHHcCCChHHHHHHHH--HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhcccCCccc
Confidence            888889999999999999999876532  12222  2344444444 4555666654   455555555332     222


Q ss_pred             ChhhhhchHHHHHH-hhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHh-HHHHH------
Q 011328          194 LFEQTRPALPALER-LIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLI-PALRT------  265 (488)
Q Consensus       194 ~~~~~~~~~~~l~~-ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~-~a~~~------  265 (488)
                      .......++|.++. .+-+.-.+++.-++.++..++...+....... ..+++.|+.....-++.+.. .++++      
T Consensus      1124 ~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~-~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~e 1202 (1702)
T KOG0915|consen 1124 GKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHF-PKLIPLLLNAYSELEPQVLNYLSLRLINIETE 1202 (1702)
T ss_pred             HHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchh-hHHHHHHHHHccccchHHHHHHHHhhhhhHHH
Confidence            22333445555442 12255689999999999999987765444222 25667777766655444332 22222      


Q ss_pred             ----HhH-hhcCCch--hhHHHh-------hCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHH
Q 011328          266 ----VGN-IVTGDDM--QTQCII-------NHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGP  331 (488)
Q Consensus       266 ----L~~-l~~~~~~--~~~~~~-------~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~  331 (488)
                          +.. .+.+++.  ....++       -...+|.+.++++++..-..|..++..+.-++..-........ -..+..
T Consensus      1203 alDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~s-gKll~a 1281 (1702)
T KOG0915|consen 1203 ALDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPYS-GKLLRA 1281 (1702)
T ss_pred             HHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcch-hHHHHH
Confidence                111 1111110  000000       1134555555555544444555555555555432111011111 124556


Q ss_pred             HHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHH
Q 011328          332 LVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVS  368 (488)
Q Consensus       332 L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~  368 (488)
                      ++..+++.++.+++..+.|.+.++....+++...+++
T Consensus      1282 l~~g~~dRNesv~kafAsAmG~L~k~Ss~dq~qKLie 1318 (1702)
T KOG0915|consen 1282 LFPGAKDRNESVRKAFASAMGYLAKFSSPDQMQKLIE 1318 (1702)
T ss_pred             HhhccccccHHHHHHHHHHHHHHHhcCChHHHHHHHH
Confidence            6666677789999999999999999888877777654

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=98.23  E-value=0.00086  Score=63.65  Aligned_cols=215  Identities=25%  Similarity=0.348  Sum_probs=151.8

Q ss_pred             CCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHH
Q 011328           73 GVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRD  152 (488)
Q Consensus        73 ~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~  152 (488)
                      ..++.+.+++.+.+ ..+|..+.+.++.+..           ...++.+..++.+.++.+|..+..+|+.+-  .+    
T Consensus        43 ~~~~~~~~~l~~~~-~~vr~~aa~~l~~~~~-----------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~--~~----  104 (335)
T COG1413          43 EAADELLKLLEDED-LLVRLSAAVALGELGS-----------EEAVPLLRELLSDEDPRVRDAAADALGELG--DP----  104 (335)
T ss_pred             hhHHHHHHHHcCCC-HHHHHHHHHHHhhhch-----------HHHHHHHHHHhcCCCHHHHHHHHHHHHccC--Ch----
Confidence            46888999999997 8999999999776654           235899999999999999999999888873  22    


Q ss_pred             HHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCCh------------hHHHHH
Q 011328          153 LVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDD------------EVLTDA  220 (488)
Q Consensus       153 ~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~------------~v~~~a  220 (488)
                           ..++.++..+..+.+..++..+.++|..+-...          .+..++..+.+...            .++..+
T Consensus       105 -----~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~----------a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a  169 (335)
T COG1413         105 -----EAVPPLVELLENDENEGVRAAAARALGKLGDER----------ALDPLLEALQDEDSGSAAAALDAALLDVRAAA  169 (335)
T ss_pred             -----hHHHHHHHHHHcCCcHhHHHHHHHHHHhcCchh----------hhHHHHHHhccchhhhhhhhccchHHHHHHHH
Confidence                 257788888855788999999999999876542          36667777766542            234444


Q ss_pred             HHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhh
Q 011328          221 CWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKS  300 (488)
Q Consensus       221 l~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~  300 (488)
                      ...++.+..           ...++.+...+.+....+|..+..+|+.+...+         ..+.+.+...+.+. +..
T Consensus       170 ~~~l~~~~~-----------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~-~~~  228 (335)
T COG1413         170 AEALGELGD-----------PEAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDE-SLE  228 (335)
T ss_pred             HHHHHHcCC-----------hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCC-CHH
Confidence            444443321           134566777777777778888888888777644         23456677777777 778


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHH
Q 011328          301 IKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAIS  352 (488)
Q Consensus       301 v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~  352 (488)
                      +|..++.+++.+-..  +         .+..+...+...+..++..+..++.
T Consensus       229 vr~~~~~~l~~~~~~--~---------~~~~l~~~l~~~~~~~~~~~~~~~~  269 (335)
T COG1413         229 VRKAALLALGEIGDE--E---------AVDALAKALEDEDVILALLAAAALG  269 (335)
T ss_pred             HHHHHHHHhcccCcc--h---------hHHHHHHHHhccchHHHHHHHHHhc
Confidence            888888777766432  1         3555666677766666665555554

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]

Probab=98.22  E-value=1.2e-05  Score=61.71  Aligned_cols=135  Identities=13%  Similarity=0.105  Sum_probs=112.8

Q ss_pred             CChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHH
Q 011328          158 GALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQA  237 (488)
Q Consensus       158 ~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~  237 (488)
                      +.+..|+.-....++.+.++.+..-|.|++.++.+........++...+..+..+|..+.+.++..|+|+|.... ..+.
T Consensus        16 ~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~-n~~~   94 (173)
T KOG4646|consen   16 EYLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKT-NAKF   94 (173)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChH-HHHH
Confidence            356777777767788999999999999999988777778888999999999999999999999999999998764 4577


Q ss_pred             HHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHh
Q 011328          238 VIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLL  293 (488)
Q Consensus       238 ~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL  293 (488)
                      +.+.++++.++..+.++...+...++.++..++.+....+..+....++..+.+.-
T Consensus        95 I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~r~~  150 (173)
T KOG4646|consen   95 IREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQRWR  150 (173)
T ss_pred             HHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHHHHH
Confidence            99999999999999999888999999999999988777776666544544444443

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=98.20  E-value=0.00015  Score=69.24  Aligned_cols=288  Identities=15%  Similarity=0.104  Sum_probs=166.3

Q ss_pred             HHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHH
Q 011328           75 VPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLV  154 (488)
Q Consensus        75 i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~  154 (488)
                      .|.|-..|++.- +.+...+++.+..++..+  ....+++ ..+..|-.+|++.....|-.|+++|..++...|..  ..
T Consensus       266 rpfL~~wls~k~-emV~lE~Ar~v~~~~~~n--v~~~~~~-~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~k--v~  339 (898)
T COG5240         266 RPFLNSWLSDKF-EMVFLEAARAVCALSEEN--VGSQFVD-QTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQK--VS  339 (898)
T ss_pred             HHHHHHHhcCcc-hhhhHHHHHHHHHHHHhc--cCHHHHH-HHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCce--ee
Confidence            345555566665 789999999999988733  1222222 24678888999999999999999999999776642  11


Q ss_pred             HhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchh
Q 011328          155 LSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDK  234 (488)
Q Consensus       155 ~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~  234 (488)
                      .-   -+.+-.++ .+.+..+-   .+++..|...............++.+++=+.++-..+...+++.|+...   +..
T Consensus       340 vc---N~evEsLI-sd~Nr~Is---tyAITtLLKTGt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~F---p~k  409 (898)
T COG5240         340 VC---NKEVESLI-SDENRTIS---TYAITTLLKTGTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLF---PSK  409 (898)
T ss_pred             ec---ChhHHHHh-hcccccch---HHHHHHHHHcCchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhC---cHH
Confidence            11   11122222 44444443   3444444444333333333334444444444444445555555555543   222


Q ss_pred             HHHHHHhCCHHHHHHhc-CCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHh
Q 011328          235 IQAVIEAGVCPRLVELL-RHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNIT  313 (488)
Q Consensus       235 ~~~~~~~~~l~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~  313 (488)
                      ..     ..+..|...| +.+.-+.+..+..++..+....++..+     .++..|...+.+.+-+   +-++++|+-|.
T Consensus       410 ~~-----s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skE-----raLe~LC~fIEDcey~---~I~vrIL~iLG  476 (898)
T COG5240         410 KL-----SYLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKE-----RALEVLCTFIEDCEYH---QITVRILGILG  476 (898)
T ss_pred             HH-----HHHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHH-----HHHHHHHHHHhhcchh---HHHHHHHHHhc
Confidence            22     2234444444 335567788888888888776655443     3455677777655333   34555555555


Q ss_pred             cCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHH
Q 011328          314 AGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEG  393 (488)
Q Consensus       314 ~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~  393 (488)
                      ...|....   -...+..+..-+--.+.-+|..|..||..++.+.+.....    ..+...|.+++++.|.++|..|..+
T Consensus       477 ~EgP~a~~---P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~~~~----~sv~~~lkRclnD~DdeVRdrAsf~  549 (898)
T COG5240         477 REGPRAKT---PGKYVRHIYNRLILENNIVRSAAVQALSKFALNISDVVSP----QSVENALKRCLNDQDDEVRDRASFL  549 (898)
T ss_pred             ccCCCCCC---cchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCccccccH----HHHHHHHHHHhhcccHHHHHHHHHH
Confidence            42111000   0012333333333345679999999999988766433222    2356677889999999999999988


Q ss_pred             HHHHH
Q 011328          394 LENIL  398 (488)
Q Consensus       394 L~~l~  398 (488)
                      +.++=
T Consensus       550 l~~~~  554 (898)
T COG5240         550 LRNMR  554 (898)
T ss_pred             HHhhh
Confidence            88774

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=98.19  E-value=0.0002  Score=63.52  Aligned_cols=237  Identities=17%  Similarity=0.156  Sum_probs=148.8

Q ss_pred             HHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCC--CCcchHhHHHHHHhHhhcCCchhhHHHh-
Q 011328          205 LERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH--PSPSVLIPALRTVGNIVTGDDMQTQCII-  281 (488)
Q Consensus       205 l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~-  281 (488)
                      +-++++.-++-.+.-|.+++.++......+.....+...-..++.++++  +..+++..++.+++.++.. +...+.+- 
T Consensus       154 Lgkl~Q~i~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~-~~~aqdi~K  232 (432)
T COG5231         154 LGKLSQLIDFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFS-KECAQDIDK  232 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcC-HHHHHHHHH
Confidence            3344444456677888899998887665444434444455677777766  4568899999999999873 33332221 


Q ss_pred             hCCChHHHHHHhcccchhhHHHHHHHHHHHHhcC-CHHHHHHHH-HcCChHHHHHHHhcC--ChhHHHHHHHHHHHhccC
Q 011328          282 NHQALPCLLDLLTQNYKKSIKKEACWTISNITAG-NVNQIQAII-EAGIIGPLVNLLLNA--EFEIKKEAAWAISNATSG  357 (488)
Q Consensus       282 ~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~-~~~~l~~L~~ll~~~--~~~v~~~a~~aL~~l~~~  357 (488)
                      -...+..++.+.+..-..+|-+-++.++.|++.. ....+..+. ..++.+..-.+...+  |.+++...-..=..+..+
T Consensus       233 ~~dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~  312 (432)
T COG5231         233 MDDLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQN  312 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhh
Confidence            1235666777776654677888899999999883 334444443 444555555555443  555543322222222111


Q ss_pred             C-------------------------C----HHHHHHHHHC--CChHHHHhhcCCCCHH-HHHHHHHHHHHHHHhhhhhh
Q 011328          358 G-------------------------S----NEQIKFLVSQ--GCIKPLCDLLNCPDPR-IVTVCLEGLENILKAGEAEK  405 (488)
Q Consensus       358 ~-------------------------~----~~~~~~l~~~--~~i~~L~~ll~~~~~~-v~~~al~~L~~l~~~~~~~~  405 (488)
                      .                         +    ..+...+.+.  ..+..|..+++..++. ....|+.-+..+++..+.  
T Consensus       313 ~k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE--  390 (432)
T COG5231         313 TKKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPE--  390 (432)
T ss_pred             hhhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCch--
Confidence            0                         0    0112222222  2366677777766555 445667677777766654  


Q ss_pred             ccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCC
Q 011328          406 NMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVE  454 (488)
Q Consensus       406 ~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~  454 (488)
                                ....+..-|+-+.+.+|++|++++|+-.|...+..+...
T Consensus       391 ----------~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~~  429 (432)
T COG5231         391 ----------INAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCISS  429 (432)
T ss_pred             ----------HHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHHhh
Confidence                      377889999999999999999999999999988776543

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.17  E-value=0.00011  Score=72.11  Aligned_cols=240  Identities=17%  Similarity=0.206  Sum_probs=140.7

Q ss_pred             CHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHH
Q 011328           74 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDL  153 (488)
Q Consensus        74 ~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~  153 (488)
                      ....|.+.|++.+++.++..++..|+-...++..       ..+.+.+-..|..++.-.-+.|...++-+.-++.. .+ 
T Consensus       414 ~~~yL~~~Lk~~~~e~v~hG~cLGlGLa~mGSa~-------~eiYe~lKevLy~D~AvsGEAAgi~MGl~mlGt~~-~e-  484 (929)
T KOG2062|consen  414 ITDYLLQQLKTAENEVVRHGACLGLGLAGMGSAN-------EEIYEKLKEVLYNDSAVSGEAAGIAMGLLMLGTAN-QE-  484 (929)
T ss_pred             HHHHHHHHHHhccchhhhhhhhhhccchhccccc-------HHHHHHHHHHHhccchhhhhHHHHhhhhHhhCcCc-HH-
Confidence            4455555565555455666665555444432211       11234455555555555555555555554433321 11 


Q ss_pred             HHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCch
Q 011328          154 VLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTND  233 (488)
Q Consensus       154 ~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~  233 (488)
                           ++..+...-.....+.+.+-..--++-...+.       ...+=+.+-+++.+.|+-+|...+.++..--.....
T Consensus       485 -----aiedm~~Ya~ETQHeki~RGl~vGiaL~~ygr-------qe~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgn  552 (929)
T KOG2062|consen  485 -----AIEDMLTYAQETQHEKIIRGLAVGIALVVYGR-------QEDADPLIKELLRDKDPILRYGGMYTLALAYVGTGN  552 (929)
T ss_pred             -----HHHHHHHHhhhhhHHHHHHHHHHhHHHHHhhh-------hhhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCc
Confidence                 23334444433334444443333232222221       124556677788888888888776665432212111


Q ss_pred             hHHHHHHhCCHHHHHHh-cCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHH
Q 011328          234 KIQAVIEAGVCPRLVEL-LRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNI  312 (488)
Q Consensus       234 ~~~~~~~~~~l~~L~~l-L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl  312 (488)
                             .+.+..|+.. ..+.+.+||+.|.-+|+-++...++         ..+..+.+|...+++.||..++.+|+-.
T Consensus       553 -------nkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~---------~~~s~V~lLses~N~HVRyGaA~ALGIa  616 (929)
T KOG2062|consen  553 -------NKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPE---------QLPSTVSLLSESYNPHVRYGAAMALGIA  616 (929)
T ss_pred             -------hhhHHHhhcccccccchHHHHHHHHHheeeEecChh---------hchHHHHHHhhhcChhhhhhHHHHHhhh
Confidence                   1556677776 5678899999999999999886663         3567888888887999999999999988


Q ss_pred             hcC--CHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCC
Q 011328          313 TAG--NVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGS  359 (488)
Q Consensus       313 ~~~--~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~  359 (488)
                      |.+  ..+         .+..|-.+..++..-||+-|+-+++-+....+
T Consensus       617 CAGtG~~e---------Ai~lLepl~~D~~~fVRQgAlIa~amIm~Q~t  656 (929)
T KOG2062|consen  617 CAGTGLKE---------AINLLEPLTSDPVDFVRQGALIALAMIMIQQT  656 (929)
T ss_pred             hcCCCcHH---------HHHHHhhhhcChHHHHHHHHHHHHHHHHHhcc
Confidence            874  233         23333344556667799999999888875543

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=98.16  E-value=0.0017  Score=65.90  Aligned_cols=140  Identities=16%  Similarity=0.138  Sum_probs=100.5

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHH
Q 011328           32 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRV  111 (488)
Q Consensus        32 i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~  111 (488)
                      +|.+++...+.|.+++...-..|...+... +   +..+  -.++.+.+=+++++ +.+|..|++.++.+=.  ++... 
T Consensus        57 f~dViK~~~trd~ElKrL~ylYl~~yak~~-P---~~~l--LavNti~kDl~d~N-~~iR~~AlR~ls~l~~--~el~~-  126 (757)
T COG5096          57 FPDVIKNVATRDVELKRLLYLYLERYAKLK-P---ELAL--LAVNTIQKDLQDPN-EEIRGFALRTLSLLRV--KELLG-  126 (757)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHhccC-H---HHHH--HHHHHHHhhccCCC-HHHHHHHHHHHHhcCh--HHHHH-
Confidence            344455555555555555555555555443 1   1111  14667777888999 9999999999987754  23222 


Q ss_pred             HHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcC
Q 011328          112 VIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG  189 (488)
Q Consensus       112 ~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~  189 (488)
                          .+++.+.+++.++++.+|..|+.++..+-+-++   +.+.+.|.+..+..++ .++++.+..+|+.+|..+...
T Consensus       127 ----~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~---~l~~~~g~~~~l~~l~-~D~dP~Vi~nAl~sl~~i~~e  196 (757)
T COG5096         127 ----NIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDK---DLYHELGLIDILKELV-ADSDPIVIANALASLAEIDPE  196 (757)
T ss_pred             ----HHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCH---hhhhcccHHHHHHHHh-hCCCchHHHHHHHHHHHhchh
Confidence                357899999999999999999999999986654   3566666777677777 889999999999999988765

>PF05536 Neurochondrin: Neurochondrin

Probab=98.12  E-value=0.00018  Score=71.79  Aligned_cols=237  Identities=16%  Similarity=0.140  Sum_probs=165.5

Q ss_pred             CHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchh---hHHHHhCCCHHHHHHhhCC-------CCHHHHHHHHHHHhhh
Q 011328           74 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN---TRVVIDHGAVPIFVRLLSS-------PTDDVREQAVWALGNV  143 (488)
Q Consensus        74 ~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~---~~~~~~~g~i~~L~~~L~~-------~~~~v~~~a~~~L~~l  143 (488)
                      .++..+++|+..+ ++-|..++..+.++...++..   ++.+.+.=+.+.+-++|++       +....+..++.+|+.+
T Consensus         6 ~l~~c~~lL~~~~-D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f   84 (543)
T PF05536_consen    6 SLEKCLSLLKSAD-DTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAF   84 (543)
T ss_pred             HHHHHHHHhccCC-cHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHH
Confidence            4566778899888 788999999999999865532   3346676568888999987       4577889999999999


Q ss_pred             hCCCchh-HHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHH
Q 011328          144 AGDSPKC-RDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACW  222 (488)
Q Consensus       144 ~~~~~~~-~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~  222 (488)
                      |.++.-. ...+.  +.++.+++.+.++++..+...++.+|..++............+.++.+.+.+.+ .+...+.++.
T Consensus        85 ~~~~~~a~~~~~~--~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~  161 (543)
T PF05536_consen   85 CRDPELASSPQMV--SRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN-QSFQMEIALN  161 (543)
T ss_pred             cCChhhhcCHHHH--HHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHH
Confidence            9854321 12222  368899999955555589999999999999777777888889999999999987 5667888888


Q ss_pred             HHHHhccCCchhH-H--HHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchh-hHHH----hhCCChHHHHHHhc
Q 011328          223 ALSYLSDGTNDKI-Q--AVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQ-TQCI----INHQALPCLLDLLT  294 (488)
Q Consensus       223 ~L~~l~~~~~~~~-~--~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~-~~~~----~~~~~~~~L~~lL~  294 (488)
                      ++.+++....... .  .-.-..+++.+...+.......+...+..|..+....+.. ....    ....+...+..+++
T Consensus       162 lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~  241 (543)
T PF05536_consen  162 LLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQ  241 (543)
T ss_pred             HHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHh
Confidence            8888775433110 0  0000134455555565556667888899998888765321 1111    12245566667777


Q ss_pred             ccchhhHHHHHHHHHHHHhc
Q 011328          295 QNYKKSIKKEACWTISNITA  314 (488)
Q Consensus       295 ~~~~~~v~~~a~~~L~nl~~  314 (488)
                      +...+.-|..++.....+..
T Consensus       242 sr~~~~~R~~al~Laa~Ll~  261 (543)
T PF05536_consen  242 SRLTPSQRDPALNLAASLLD  261 (543)
T ss_pred             cCCCHHHHHHHHHHHHHHHH
Confidence            76567777777777666654

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=98.11  E-value=6.5e-06  Score=50.65  Aligned_cols=41  Identities=44%  Similarity=0.890  Sum_probs=38.2

Q ss_pred             CchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhC
Q 011328          105 TSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAG  145 (488)
Q Consensus       105 ~~~~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~  145 (488)
                      +++++..+++.|+++.|+++|+++++++++.|+|+|+||+.
T Consensus         1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~   41 (41)
T PF00514_consen    1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA   41 (41)
T ss_dssp             SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence            46789999999999999999999999999999999999973

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []

Probab=98.10  E-value=0.00086  Score=65.57  Aligned_cols=255  Identities=16%  Similarity=0.139  Sum_probs=165.3

Q ss_pred             CccHHHHHHcCCHHHHHHhh---------cCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCC-----
Q 011328           63 SPPINEVIQSGVVPRFIEFL---------SRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSP-----  128 (488)
Q Consensus        63 ~~~~~~~~~~~~i~~L~~lL---------~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~-----  128 (488)
                      ......+....++..|.++-         ....++.+...|++||+|+...++..|..+.+.|..+.++..|+..     
T Consensus        12 ~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~   91 (446)
T PF10165_consen   12 PTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQ   91 (446)
T ss_pred             cccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCC
Confidence            34455555555666666554         2233389999999999999999999999999999999999999875     


Q ss_pred             CHHHHHHHHHHHhhhhCCCchhHHHHHhc-CChHHHHHHhccc----------------ccHhHHHHHHHHHHHhhcCCC
Q 011328          129 TDDVREQAVWALGNVAGDSPKCRDLVLSN-GALMPLLAQFNEH----------------AKLSMLRNATWTLSNFCRGKP  191 (488)
Q Consensus       129 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-~~l~~L~~ll~~~----------------~~~~v~~~a~~~L~~l~~~~~  191 (488)
                      +.++.-..+++|.-++...+..+..+.+. +++..++..+...                .+......++..+.|++...+
T Consensus        92 ~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~  171 (446)
T PF10165_consen   92 PSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYP  171 (446)
T ss_pred             ChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccC
Confidence            78888889998888887777666655554 6666666655210                134556788888899887764


Q ss_pred             CCChhhhh----chHHHHHHhh---c--cCChhHHHHHHHHHHHhccCCchh-----------HHHHHHhCCHHHHHHhc
Q 011328          192 QPLFEQTR----PALPALERLI---H--SNDDEVLTDACWALSYLSDGTNDK-----------IQAVIEAGVCPRLVELL  251 (488)
Q Consensus       192 ~~~~~~~~----~~~~~l~~ll---~--~~~~~v~~~al~~L~~l~~~~~~~-----------~~~~~~~~~l~~L~~lL  251 (488)
                      ........    .++..+..++   .  .+.......++.+|.++--.....           .........+..|+.+|
T Consensus       172 ~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~L  251 (446)
T PF10165_consen  172 KSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFL  251 (446)
T ss_pred             cccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHH
Confidence            43332333    3444444442   1  123566777888888773211100           00011123455566665


Q ss_pred             CC-----C---CcchHhHHHHHHhHhhcCCchhhHHHh----------------hCCChHHHHHHhcccchhhHHHHHHH
Q 011328          252 RH-----P---SPSVLIPALRTVGNIVTGDDMQTQCII----------------NHQALPCLLDLLTQNYKKSIKKEACW  307 (488)
Q Consensus       252 ~~-----~---~~~v~~~a~~~L~~l~~~~~~~~~~~~----------------~~~~~~~L~~lL~~~~~~~v~~~a~~  307 (488)
                      ..     .   -.+.....+.+|..++......++.+.                ...+-..|++++.++ .+.+|..+..
T Consensus       252 d~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~-~~~~k~~vae  330 (446)
T PF10165_consen  252 DKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSP-DPQLKDAVAE  330 (446)
T ss_pred             HHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCC-CchHHHHHHH
Confidence            32     1   124566678888888876544433332                234677899999999 5999999999


Q ss_pred             HHHHHhcCCHH
Q 011328          308 TISNITAGNVN  318 (488)
Q Consensus       308 ~L~nl~~~~~~  318 (488)
                      .+..+|..+..
T Consensus       331 llf~Lc~~d~~  341 (446)
T PF10165_consen  331 LLFVLCKEDAS  341 (446)
T ss_pred             HHHHHHhhhHH
Confidence            99888765443

It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=98.09  E-value=6.8e-06  Score=50.56  Aligned_cols=41  Identities=46%  Similarity=0.690  Sum_probs=38.1

Q ss_pred             CHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhcc
Q 011328          316 NVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS  356 (488)
Q Consensus       316 ~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~  356 (488)
                      ++++++.+++.|++|.|++++.+++.++++.|+|+|+|++.
T Consensus         1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~   41 (41)
T PF00514_consen    1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA   41 (41)
T ss_dssp             SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence            46788999999999999999999999999999999999973

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=98.08  E-value=7.3e-05  Score=66.60  Aligned_cols=187  Identities=17%  Similarity=0.229  Sum_probs=118.7

Q ss_pred             CCCCcchHhHHHHHHhHhhcCC--chhhHHHhh--CCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcC
Q 011328          252 RHPSPSVLIPALRTVGNIVTGD--DMQTQCIIN--HQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAG  327 (488)
Q Consensus       252 ~~~~~~v~~~a~~~L~~l~~~~--~~~~~~~~~--~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~  327 (488)
                      .+.+++.|..++.-|..++.++  ......+.+  ..++..+...+.+. ...+...|+.++..++...........+ .
T Consensus        17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~-Rs~v~~~A~~~l~~l~~~l~~~~~~~~~-~   94 (228)
T PF12348_consen   17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDL-RSKVSKTACQLLSDLARQLGSHFEPYAD-I   94 (228)
T ss_dssp             T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH----HHHHHHHHHHHHHHHHGGGGHHHHH-H
T ss_pred             CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHhHhHHHHHH-H
Confidence            5578899999999999998866  222222221  14556777777777 7889999999999998743333444444 4


Q ss_pred             ChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhcc
Q 011328          328 IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNM  407 (488)
Q Consensus       328 ~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~  407 (488)
                      ++|.|+..+.++...++..|..+|..++....  ....+    ....+....++.++.++..++..+..++.........
T Consensus        95 ~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~--~~~~~----~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~  168 (228)
T PF12348_consen   95 LLPPLLKKLGDSKKFIREAANNALDAIIESCS--YSPKI----LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSV  168 (228)
T ss_dssp             HHHHHHHGGG---HHHHHHHHHHHHHHHTTS---H--HH----HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GG
T ss_pred             HHHHHHHHHccccHHHHHHHHHHHHHHHHHCC--cHHHH----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhh
Confidence            78999999999988999999999999998764  11111    1567777889999999999999999998765511110


Q ss_pred             CCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCC
Q 011328          408 GNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVE  454 (488)
Q Consensus       408 ~~~~~~~~~~~~l~~~g~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~  454 (488)
                              +.....-....+.+..+.++.+++||+.|..++..|+.-
T Consensus       169 --------l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~  207 (228)
T PF12348_consen  169 --------LQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSH  207 (228)
T ss_dssp             --------G--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHH
T ss_pred             --------hcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence                    011000123467788999999999999999999887654

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]

Probab=98.03  E-value=0.00054  Score=64.19  Aligned_cols=355  Identities=14%  Similarity=0.110  Sum_probs=179.9

Q ss_pred             CCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCC---chhhHHHH----
Q 011328           41 SDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGT---SENTRVVI----  113 (488)
Q Consensus        41 s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~---~~~~~~~~----  113 (488)
                      ...+.+..+.+++|.++.+..+.+..+.-.-..++..+..++++.+ +.++..++..++.+...+   |+....+-    
T Consensus       118 e~~~~~~tq~~kcla~lv~~~p~~~l~~~~~~~~~~~ik~~i~~~d-~~v~vs~l~~~~~~v~t~~~~pei~~~~~~~~s  196 (728)
T KOG4535|consen  118 ESSSQTVTQIIKCLANLVSNAPYDRLKLSLLTKVWNQIKPYIRHKD-VNVRVSSLTLLGAIVSTHAPLPEVQLLLQQPCS  196 (728)
T ss_pred             hcCchhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhcCC-CChhhHHHHHHHHHHhcCCCCHHHHHHhcCCCc
Confidence            4567788899999999998764444443334556677778888999 899999999998887522   23222220    


Q ss_pred             -------------------hCC------------------CHH-----------------HHHHhhCC--CCHHHHHHHH
Q 011328          114 -------------------DHG------------------AVP-----------------IFVRLLSS--PTDDVREQAV  137 (488)
Q Consensus       114 -------------------~~g------------------~i~-----------------~L~~~L~~--~~~~v~~~a~  137 (488)
                                         ...                  ++.                 ...+.+.+  ....+|-.|+
T Consensus       197 ~~n~~~~h~s~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~i~~~~~i~~~~~~~s~~~~~~~~~~~~~~~ps~~rle~~  276 (728)
T KOG4535|consen  197 SSNSATPHLSPPDWWKKLPAGPSLEETSVSSPKGSSEPCWLIRLCISIVVLPKEDSCSGSDAGSAAGSTYEPSPMRLEAL  276 (728)
T ss_pred             cccccCCCCCChHHHHhcCCCchhhhhccCCccCCCCCcceeeeeeeeeecCCccccchhhHHhhhcCccCCchhHHHHH
Confidence                               000                  000                 00000000  1122333444


Q ss_pred             HHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCC-----CCCChhhh-hchHHHHH-----
Q 011328          138 WALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-----PQPLFEQT-RPALPALE-----  206 (488)
Q Consensus       138 ~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~-----~~~~~~~~-~~~~~~l~-----  206 (488)
                      .+|..++.+-.-.+...++   +...+..-..+.++.++..+..++..+...-     |....... .+.+-.+.     
T Consensus       277 qvl~~~a~~~~~~~~~~~~---l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~~l~~p~  353 (728)
T KOG4535|consen  277 QVLTLLARYFSMTQAYLME---LGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWTMMLNGPL  353 (728)
T ss_pred             HHHHHHHHHHHHHHHHHHH---HHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHHHHccCCC
Confidence            4444443221111111111   1111111114557778888888777665432     22222211 12111111     


Q ss_pred             --HhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCC
Q 011328          207 --RLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQ  284 (488)
Q Consensus       207 --~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~  284 (488)
                        ..-.+..+......|.++.++..........-.+.-.+-.+.-+-++++.-++..|++.++-+.-+.........-..
T Consensus       354 ~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~  433 (728)
T KOG4535|consen  354 PRALYDSEHPTLQASACDALSSILPEAFSNLPNDRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQDVIFVAD  433 (728)
T ss_pred             hhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcchhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchhhhHHHHHH
Confidence              011223456677777788777643221111000001111111112334445677788887777765443333334445


Q ss_pred             ChHHHHHHhcccchhhHHHHHHHHHHHHhc----C--CHHHH-HHHHHcCChHHHHHHHhc---CChhHHHHHHHHHHHh
Q 011328          285 ALPCLLDLLTQNYKKSIKKEACWTISNITA----G--NVNQI-QAIIEAGIIGPLVNLLLN---AEFEIKKEAAWAISNA  354 (488)
Q Consensus       285 ~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~----~--~~~~~-~~l~~~~~l~~L~~ll~~---~~~~v~~~a~~aL~~l  354 (488)
                      ....+...+.+. ....|..++|+++|+..    +  +++.. ..+.. -.+..+++.-..   ..+.|+.++.++|+|+
T Consensus       434 aa~~il~sl~d~-~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg-~ll~~~~~~A~~~~Ad~dkV~~navraLgnl  511 (728)
T KOG4535|consen  434 AANAILMSLEDK-SLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSG-LLLLKMLRSAIEASADKDKVKSNAVRALGNL  511 (728)
T ss_pred             HHHHHHHHhhhH-hHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHH-HHHHHHHHHHHHhhhhhhhhhhHHHHHHhhH
Confidence            667777778777 77899999999999985    1  22211 12211 123333333222   2678999999999999


Q ss_pred             ccCCCH--HHHHHHHHCCChHHHHhhcC-CCCHHHHHHHHHHHHHHHHhh
Q 011328          355 TSGGSN--EQIKFLVSQGCIKPLCDLLN-CPDPRIVTVCLEGLENILKAG  401 (488)
Q Consensus       355 ~~~~~~--~~~~~l~~~~~i~~L~~ll~-~~~~~v~~~al~~L~~l~~~~  401 (488)
                      ...-.+  +........+.+..+....- ...-+++=+++.+++|+++..
T Consensus       512 lQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~  561 (728)
T KOG4535|consen  512 LQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNP  561 (728)
T ss_pred             HHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCc
Confidence            743211  01111111222222222221 234578888899999998653

>KOG2734 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.02  E-value=0.0013  Score=61.05  Aligned_cols=226  Identities=12%  Similarity=0.122  Sum_probs=167.1

Q ss_pred             HhhhccHHHHHHHhcCCCHHHHHHHHHHHHHHhccC----CC----ccHHHHHHcCCHHHHHHhhcCCC-----ChhHHH
Q 011328           26 QLQLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIE----RS----PPINEVIQSGVVPRFIEFLSRDD-----FPQLQF   92 (488)
Q Consensus        26 ~~~~~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~----~~----~~~~~~~~~~~i~~L~~lL~~~~-----~~~v~~   92 (488)
                      -..+++++.++.+|..++.++....+..+..+...+    +.    ..++.+++.++++.|++.++.=+     ..+-..
T Consensus       121 lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvkeea~gv~  200 (536)
T KOG2734|consen  121 LVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKEEADGVH  200 (536)
T ss_pred             HHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchhhhhhhH
Confidence            344589999999999999999999999999875432    11    23577788999999998886433     122345


Q ss_pred             HHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCC--CCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhc--
Q 011328           93 EAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS--PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN--  168 (488)
Q Consensus        93 ~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~--  168 (488)
                      .++.++-|+..-.++....+++.|.+.-|+.-+..  .-..-...|..+++-+..++.+.+..+-..+++..+++.+.  
T Consensus       201 ~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~la~y  280 (536)
T KOG2734|consen  201 NTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQLAVY  280 (536)
T ss_pred             HHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhhcchh
Confidence            66778888888889999999998888887774433  44556677888999998888877777777888888888774  


Q ss_pred             --cc----ccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCc--hhHHHHHH
Q 011328          169 --EH----AKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTN--DKIQAVIE  240 (488)
Q Consensus       169 --~~----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~--~~~~~~~~  240 (488)
                        ++    ...+...+...+|+.+.....+........++..+.-+++. ....+..++.+|-....+++  +....+++
T Consensus       281 k~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvLd~am~g~~gt~~C~kfVe  359 (536)
T KOG2734|consen  281 KRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLRE-KKVSRGSALKVLDHAMFGPEGTPNCNKFVE  359 (536)
T ss_pred             hccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHH-HHHhhhhHHHHHHHHHhCCCchHHHHHHHH
Confidence              11    23467788888888888877666666666677765555554 66678888999988877665  55666777


Q ss_pred             hCCHHHHHHhcC
Q 011328          241 AGVCPRLVELLR  252 (488)
Q Consensus       241 ~~~l~~L~~lL~  252 (488)
                      ..++..++.+..
T Consensus       360 ~lGLrtiF~~FM  371 (536)
T KOG2734|consen  360 ILGLRTIFPLFM  371 (536)
T ss_pred             HHhHHHHHHHHh
Confidence            777777766643

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]

Probab=98.01  E-value=0.0053  Score=63.47  Aligned_cols=261  Identities=14%  Similarity=0.114  Sum_probs=159.7

Q ss_pred             cCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCC-CCHHHHHHHHHHHhhhhCCCchh
Q 011328           72 SGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKC  150 (488)
Q Consensus        72 ~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~-~~~~v~~~a~~~L~~l~~~~~~~  150 (488)
                      +.++..|+..+++.+ ..+|-.|++.++.++...|..   +. ..++...+.++.. +++..-..++-+|+.++...--.
T Consensus       340 E~vie~Lls~l~d~d-t~VrWSaAKg~grvt~rlp~~---La-d~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLl  414 (1133)
T KOG1943|consen  340 EFVIEHLLSALSDTD-TVVRWSAAKGLGRVTSRLPPE---LA-DQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLL  414 (1133)
T ss_pred             HHHHHHHHHhccCCc-chhhHHHHHHHHHHHccCcHH---HH-HHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcc
Confidence            368888889999999 799999999999999866522   21 1345666665554 45677778999999998654221


Q ss_pred             HHHHHhcCChHHHHHHhc-------ccccHhHHHHHHHHHHHhhcCCCCC-ChhhhhchHHHHH-HhhccCChhHHHHHH
Q 011328          151 RDLVLSNGALMPLLAQFN-------EHAKLSMLRNATWTLSNFCRGKPQP-LFEQTRPALPALE-RLIHSNDDEVLTDAC  221 (488)
Q Consensus       151 ~~~~~~~~~l~~L~~ll~-------~~~~~~v~~~a~~~L~~l~~~~~~~-~~~~~~~~~~~l~-~ll~~~~~~v~~~al  221 (488)
                      -..+.  .+++.+++-+.       .+....+|.+|+++++.+++..... -........+.++ ..+-+.+-..|..|.
T Consensus       415 ps~l~--dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAs  492 (1133)
T KOG1943|consen  415 PSLLE--DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAAS  492 (1133)
T ss_pred             hHHHH--HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHH
Confidence            11221  24555555442       1235679999999999999876322 2223333333333 333456777888888


Q ss_pred             HHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHH-hcccchhh
Q 011328          222 WALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDL-LTQNYKKS  300 (488)
Q Consensus       222 ~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~l-L~~~~~~~  300 (488)
                      .++........+.-      .+++ |+...+.-.-..+..+...+..-....+..+..+++     .++.. +.+- +..
T Consensus       493 AAlqE~VGR~~n~p------~Gi~-Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~-----~L~t~Kv~HW-d~~  559 (1133)
T KOG1943|consen  493 AALQENVGRQGNFP------HGIS-LISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFN-----HLLTKKVCHW-DVK  559 (1133)
T ss_pred             HHHHHHhccCCCCC------Cchh-hhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHH-----HHHhcccccc-cHH
Confidence            88876653322110      1111 112222222334445444454444444444443332     23332 5666 889


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhcc
Q 011328          301 IKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS  356 (488)
Q Consensus       301 v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~  356 (488)
                      +|..++++|.+++...++.    ...+.++.++....+++...+.-+..+.+.++.
T Consensus       560 irelaa~aL~~Ls~~~pk~----~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~  611 (1133)
T KOG1943|consen  560 IRELAAYALHKLSLTEPKY----LADYVLPPLLDSTLSKDASMRHGVFLAAGEVIG  611 (1133)
T ss_pred             HHHHHHHHHHHHHHhhHHh----hcccchhhhhhhhcCCChHHhhhhHHHHHHHHH
Confidence            9999999999998754543    344678889998888888877766666666654

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]

Probab=97.98  E-value=0.0053  Score=63.50  Aligned_cols=258  Identities=15%  Similarity=0.152  Sum_probs=156.0

Q ss_pred             CCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCCh
Q 011328          116 GAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLF  195 (488)
Q Consensus       116 g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~  195 (488)
                      ++++.|+..+++.+..+|-.|+..++.++...|.  ...  ..++...+.++...+++..-..++-+|..++... -...
T Consensus       341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~--~La--d~vi~svid~~~p~e~~~aWHgacLaLAELA~rG-lLlp  415 (1133)
T KOG1943|consen  341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPP--ELA--DQVIGSVIDLFNPAEDDSAWHGACLALAELALRG-LLLP  415 (1133)
T ss_pred             HHHHHHHHhccCCcchhhHHHHHHHHHHHccCcH--HHH--HHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcC-Ccch
Confidence            4567777778888999999999999999977762  222  2356777777766667788889999999999865 2222


Q ss_pred             hhhhchHHHHHHhhc--------cCChhHHHHHHHHHHHhccCCc-hhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHH
Q 011328          196 EQTRPALPALERLIH--------SNDDEVLTDACWALSYLSDGTN-DKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTV  266 (488)
Q Consensus       196 ~~~~~~~~~l~~ll~--------~~~~~v~~~al~~L~~l~~~~~-~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L  266 (488)
                      .....++|.+++.+.        +.-..||..|+.+.+.++.... ...+.+...=.-..+...+-+.+-.+|++|..++
T Consensus       416 s~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAl  495 (1133)
T KOG1943|consen  416 SLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAAL  495 (1133)
T ss_pred             HHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHH
Confidence            234567777777665        2346789999999999886543 2233333221222334445667778898888877


Q ss_pred             hHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHH-HhcCChhHHH
Q 011328          267 GNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNL-LLNAEFEIKK  345 (488)
Q Consensus       267 ~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~l-l~~~~~~v~~  345 (488)
                      -.........      ..+++ |+...+.- .-..|..+...++.-....+..+..+++     .++.. +.+-|..+|+
T Consensus       496 qE~VGR~~n~------p~Gi~-Lis~~dy~-sV~~rsNcy~~l~~~ia~~~~y~~~~f~-----~L~t~Kv~HWd~~ire  562 (1133)
T KOG1943|consen  496 QENVGRQGNF------PHGIS-LISTIDYF-SVTNRSNCYLDLCVSIAEFSGYREPVFN-----HLLTKKVCHWDVKIRE  562 (1133)
T ss_pred             HHHhccCCCC------CCchh-hhhhcchh-hhhhhhhHHHHHhHHHHhhhhHHHHHHH-----HHHhcccccccHHHHH
Confidence            6655421111      01222 11111111 2223334444444444444444444433     22221 3334889999


Q ss_pred             HHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHH
Q 011328          346 EAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLEN  396 (488)
Q Consensus       346 ~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~  396 (488)
                      .++++|.+++...     ......+.++.|++.....+...+..+.-+...
T Consensus       563 laa~aL~~Ls~~~-----pk~~a~~~L~~lld~~ls~~~~~r~g~~la~~e  608 (1133)
T KOG1943|consen  563 LAAYALHKLSLTE-----PKYLADYVLPPLLDSTLSKDASMRHGVFLAAGE  608 (1133)
T ss_pred             HHHHHHHHHHHhh-----HHhhcccchhhhhhhhcCCChHHhhhhHHHHHH
Confidence            9999999987533     333445778888888777776665554444333

>KOG2734 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.98  E-value=0.0027  Score=59.04  Aligned_cols=228  Identities=13%  Similarity=0.162  Sum_probs=161.6

Q ss_pred             CccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCC-----ch----hhHHHHhCCCHHHHHHhhCC------
Q 011328           63 SPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGT-----SE----NTRVVIDHGAVPIFVRLLSS------  127 (488)
Q Consensus        63 ~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~-----~~----~~~~~~~~g~i~~L~~~L~~------  127 (488)
                      ++....+++.++++.|+++|.+.+ .++....+..+..++..+     .+    ..+.+++.++++.|++-++.      
T Consensus       115 PdLYp~lveln~V~slL~LLgHeN-tDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvk  193 (536)
T KOG2734|consen  115 PDLYPILVELNAVQSLLELLGHEN-TDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVK  193 (536)
T ss_pred             hHHHHHHHHhccHHHHHHHhcCCC-chhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcch
Confidence            455667889999999999999999 799999999999887532     22    34567788999999998765      


Q ss_pred             CCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcc-cccHhHHHHHHHHHHHhhcCCC-CCChhhhhchHHHH
Q 011328          128 PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE-HAKLSMLRNATWTLSNFCRGKP-QPLFEQTRPALPAL  205 (488)
Q Consensus       128 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~~~l  205 (488)
                      +...-...++..+-|+....+.....+.+.|.+..|+..+.. ..-.....+|...++-+..+.. +......-.++..+
T Consensus       194 eea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~l  273 (536)
T KOG2734|consen  194 EEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVL  273 (536)
T ss_pred             hhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHH
Confidence            234455677888899998888888888888989888886633 2444567788888888887763 33333334555555


Q ss_pred             HHhhc----cC-----ChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCc--
Q 011328          206 ERLIH----SN-----DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDD--  274 (488)
Q Consensus       206 ~~ll~----~~-----~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~--  274 (488)
                      ++-+.    ++     ..+..+....+|+.+......+ ..+....+++...-+++. ....+..++++|-....+.+  
T Consensus       274 L~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr-~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvLd~am~g~~gt  351 (536)
T KOG2734|consen  274 LRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANR-ERFLKGEGLQLMNLMLRE-KKVSRGSALKVLDHAMFGPEGT  351 (536)
T ss_pred             HhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhh-hhhhccccHHHHHHHHHH-HHHhhhhHHHHHHHHHhCCCch
Confidence            55443    21     2456777888888777665544 567777777776666665 44567889999988887665  


Q ss_pred             hhhHHHhhCCChHHHHHHh
Q 011328          275 MQTQCIINHQALPCLLDLL  293 (488)
Q Consensus       275 ~~~~~~~~~~~~~~L~~lL  293 (488)
                      ..+..+++..++..+....
T Consensus       352 ~~C~kfVe~lGLrtiF~~F  370 (536)
T KOG2734|consen  352 PNCNKFVEILGLRTIFPLF  370 (536)
T ss_pred             HHHHHHHHHHhHHHHHHHH
Confidence            4555566666666666544

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=97.97  E-value=0.00012  Score=65.16  Aligned_cols=186  Identities=19%  Similarity=0.129  Sum_probs=120.9

Q ss_pred             ccCChhHHHHHHHHHHHhccCC--chhHHHHHHh--CCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCC
Q 011328          210 HSNDDEVLTDACWALSYLSDGT--NDKIQAVIEA--GVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQA  285 (488)
Q Consensus       210 ~~~~~~v~~~al~~L~~l~~~~--~~~~~~~~~~--~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~  285 (488)
                      .+.+++.+..++..|..++...  ......+.+.  .++..+...+.+....+...|+.++..++...........+ .+
T Consensus        17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~-~~   95 (228)
T PF12348_consen   17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYAD-IL   95 (228)
T ss_dssp             T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHH-HH
T ss_pred             CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHH-HH
Confidence            4568999999999999988655  2222222221  56677888888888889999999999999865555444433 57


Q ss_pred             hHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCC-hHHHHHHHhcCChhHHHHHHHHHHHhccCCC---HH
Q 011328          286 LPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGI-IGPLVNLLLNAEFEIKKEAAWAISNATSGGS---NE  361 (488)
Q Consensus       286 ~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~-l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~---~~  361 (488)
                      ++.|++.+.++ ...++..|..+|..++...+-..      .+ ++.+.....++++.+|..++..+..+.....   ..
T Consensus        96 l~~Ll~~~~~~-~~~i~~~a~~~L~~i~~~~~~~~------~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~  168 (228)
T PF12348_consen   96 LPPLLKKLGDS-KKFIREAANNALDAIIESCSYSP------KILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSV  168 (228)
T ss_dssp             HHHHHHGGG----HHHHHHHHHHHHHHHTTS-H--------HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GG
T ss_pred             HHHHHHHHccc-cHHHHHHHHHHHHHHHHHCCcHH------HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhh
Confidence            88899999888 88899999999999998533100      12 5556667788899999999999999986554   11


Q ss_pred             HHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhh
Q 011328          362 QIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEA  403 (488)
Q Consensus       362 ~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~  403 (488)
                      ......-..+++.+..++.++++++|..+-.++..+....+.
T Consensus       169 l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~  210 (228)
T PF12348_consen  169 LQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPE  210 (228)
T ss_dssp             G--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-H
T ss_pred             hcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCH
Confidence            111111124688899999999999999999999988766553

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=97.92  E-value=0.018  Score=58.74  Aligned_cols=169  Identities=17%  Similarity=0.192  Sum_probs=124.7

Q ss_pred             hcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCH
Q 011328           39 VWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAV  118 (488)
Q Consensus        39 L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i  118 (488)
                      +.|.+...+..|++.+....... .+ .     ...++-+++...+.+ .+++.-.-.-+.+.+...|+..-.     .+
T Consensus        28 l~s~n~~~kidAmK~iIa~M~~G-~d-m-----ssLf~dViK~~~trd-~ElKrL~ylYl~~yak~~P~~~lL-----av   94 (757)
T COG5096          28 LESSNDYKKIDAMKKIIAQMSLG-ED-M-----SSLFPDVIKNVATRD-VELKRLLYLYLERYAKLKPELALL-----AV   94 (757)
T ss_pred             ccccChHHHHHHHHHHHHHHhcC-CC-h-----HHHHHHHHHHHHhcC-HHHHHHHHHHHHHHhccCHHHHHH-----HH
Confidence            66777888888887666554433 22 2     135667777777667 899988888888888866632221     36


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhh
Q 011328          119 PIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQT  198 (488)
Q Consensus       119 ~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~  198 (488)
                      +.+.+=++++++.+|..|+++++.+=  .++.-.     ..++++.+.+ .+.++.||+.|+.++..+-+-+  ......
T Consensus        95 Nti~kDl~d~N~~iR~~AlR~ls~l~--~~el~~-----~~~~~ik~~l-~d~~ayVRk~Aalav~kly~ld--~~l~~~  164 (757)
T COG5096          95 NTIQKDLQDPNEEIRGFALRTLSLLR--VKELLG-----NIIDPIKKLL-TDPHAYVRKTAALAVAKLYRLD--KDLYHE  164 (757)
T ss_pred             HHHHhhccCCCHHHHHHHHHHHHhcC--hHHHHH-----HHHHHHHHHc-cCCcHHHHHHHHHHHHHHHhcC--Hhhhhc
Confidence            78888889999999999999999882  222211     2566777888 8889999999999999998653  233334


Q ss_pred             hchHHHHHHhhccCChhHHHHHHHHHHHhccC
Q 011328          199 RPALPALERLIHSNDDEVLTDACWALSYLSDG  230 (488)
Q Consensus       199 ~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~  230 (488)
                      .|....+..++.+.++.+...|+.++..+...
T Consensus       165 ~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e  196 (757)
T COG5096         165 LGLIDILKELVADSDPIVIANALASLAEIDPE  196 (757)
T ss_pred             ccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence            56777888888899999999999999988654

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.92  E-value=0.017  Score=59.34  Aligned_cols=340  Identities=14%  Similarity=0.144  Sum_probs=193.4

Q ss_pred             HHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhc------CC-CChhHHHHHHHHHHHhcCC--CchhhHHHHhCCCHHH
Q 011328           50 ATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLS------RD-DFPQLQFEAAWALTNIASG--TSENTRVVIDHGAVPI  120 (488)
Q Consensus        50 a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~------~~-~~~~v~~~a~~~L~~l~~~--~~~~~~~~~~~g~i~~  120 (488)
                      |...+..+.++...++.     .++++.+++.+.      .+ +++.-+..|++.++++++.  .+..-...++.=+++.
T Consensus       392 a~~~l~~~~~KR~ke~l-----~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~h  466 (1010)
T KOG1991|consen  392 ALDFLTTLVSKRGKETL-----PKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNH  466 (1010)
T ss_pred             HHHHHHHHHHhcchhhh-----hhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHH
Confidence            55566665554323333     356677777776      22 2367788899999998851  1111122233344566


Q ss_pred             HHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCC---Chhh
Q 011328          121 FVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQP---LFEQ  197 (488)
Q Consensus       121 L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~---~~~~  197 (488)
                      +...++++.--+|..|+|+++.++.-.-.....+  ..++....+.|..+.+-.|+..|+.+|..+..+.+..   ....
T Consensus       467 VfP~f~s~~g~Lrarac~vl~~~~~~df~d~~~l--~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~h  544 (1010)
T KOG1991|consen  467 VFPEFQSPYGYLRARACWVLSQFSSIDFKDPNNL--SEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAH  544 (1010)
T ss_pred             hhHhhcCchhHHHHHHHHHHHHHHhccCCChHHH--HHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhh
Confidence            6677788889999999999999984332111222  2356666777756788899999999999998876332   3334


Q ss_pred             hhchHHHHHHhhccCChhHHHHHHHHH-HHhccCCchhHHHHHHhCCHHHHHHhcCC---CC---cchHhHHHHHHhHhh
Q 011328          198 TRPALPALERLIHSNDDEVLTDACWAL-SYLSDGTNDKIQAVIEAGVCPRLVELLRH---PS---PSVLIPALRTVGNIV  270 (488)
Q Consensus       198 ~~~~~~~l~~ll~~~~~~v~~~al~~L-~~l~~~~~~~~~~~~~~~~l~~L~~lL~~---~~---~~v~~~a~~~L~~l~  270 (488)
                      +.+.++.++++.+.-+.+....++..+ +..+..-......+.. .+...+.+++..   .+   .+-...|.++|..+.
T Consensus       545 vp~~mq~lL~L~ne~End~Lt~vme~iV~~fseElsPfA~eL~q-~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~  623 (1010)
T KOG1991|consen  545 VPPIMQELLKLSNEVENDDLTNVMEKIVCKFSEELSPFAVELCQ-NLAETFLKVLQTSEDEDESDDDKAIAASGILRTIS  623 (1010)
T ss_pred             hhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHhhchhHHHHHH-HHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHH
Confidence            456666666666655444444444433 2232221112121222 445566666653   22   223334444444443


Q ss_pred             c---C--CchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHH
Q 011328          271 T---G--DDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKK  345 (488)
Q Consensus       271 ~---~--~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~  345 (488)
                      .   .  +....-.-++..+++.+-.+|++. -.++-.+++..+.++....++..-.+.  |+++.+.+.+.....+--.
T Consensus       624 Til~s~e~~p~vl~~le~~~l~vi~~iL~~~-i~dfyeE~~ei~~~~t~~~~~Isp~mW--~ll~li~e~~~~~~~dyf~  700 (1010)
T KOG1991|consen  624 TILLSLENHPEVLKQLEPIVLPVIGFILKND-ITDFYEELLEIVSSLTFLSKEISPIMW--GLLELILEVFQDDGIDYFT  700 (1010)
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHhhhhhhhcccCHHHH--HHHHHHHHHHhhhhHHHHH
Confidence            2   1  111112223445677777778777 677778888888777664333222333  3677788888887777788


Q ss_pred             HHHHHHHHhccCCCHHHHHHH-HHCCChHHHHhhcCCCC--HHHHHHHHHHHHHHHHh
Q 011328          346 EAAWAISNATSGGSNEQIKFL-VSQGCIKPLCDLLNCPD--PRIVTVCLEGLENILKA  400 (488)
Q Consensus       346 ~a~~aL~~l~~~~~~~~~~~l-~~~~~i~~L~~ll~~~~--~~v~~~al~~L~~l~~~  400 (488)
                      ...-+|.|....+.+.....- ...-.......++.+.+  ..=.+.|++.+.-++-.
T Consensus       701 d~~~~l~N~vt~g~~~~~s~~~y~~il~~i~~~~l~~e~~~D~d~~~a~kLle~iiL~  758 (1010)
T KOG1991|consen  701 DMMPALHNYVTYGTPSLLSNPDYLQILLEIIKKVLTSENGEDSDCESACKLLEVIILN  758 (1010)
T ss_pred             HHHHHHhhheeeCchhhhccchHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHH
Confidence            889999988877654322110 00112334444444422  22234566666666533

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=97.91  E-value=8.5e-05  Score=55.25  Aligned_cols=95  Identities=18%  Similarity=0.307  Sum_probs=74.1

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcC
Q 011328          301 IKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLN  380 (488)
Q Consensus       301 v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~  380 (488)
                      .|+.++.+|..++.+-+......++ .++++++..+.++++.||..|+.+|.|++.....+...++-+  +++.|.+++.
T Consensus         2 ~R~ggli~Laa~ai~l~~~~~~~l~-~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~--IF~~L~kl~~   78 (97)
T PF12755_consen    2 YRKGGLIGLAAVAIALGKDISKYLD-EILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNE--IFDALCKLSA   78 (97)
T ss_pred             chhHHHHHHHHHHHHchHhHHHHHH-HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHc
Confidence            3677888888887754454555554 489999999999999999999999999998765555555544  8899999999


Q ss_pred             CCCHHHHHHHHHHHHHHHH
Q 011328          381 CPDPRIVTVCLEGLENILK  399 (488)
Q Consensus       381 ~~~~~v~~~al~~L~~l~~  399 (488)
                      ++++.|+..| +.|.++++
T Consensus        79 D~d~~Vr~~a-~~Ld~llk   96 (97)
T PF12755_consen   79 DPDENVRSAA-ELLDRLLK   96 (97)
T ss_pred             CCchhHHHHH-HHHHHHhc
Confidence            9999886554 67777654

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.91  E-value=0.018  Score=60.40  Aligned_cols=236  Identities=13%  Similarity=0.060  Sum_probs=146.2

Q ss_pred             HHHHHhcccccHhHHHHHHHHHHHhhcCCCC--CChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHH
Q 011328          162 PLLAQFNEHAKLSMLRNATWTLSNFCRGKPQ--PLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVI  239 (488)
Q Consensus       162 ~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~--~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~  239 (488)
                      .+.....++.+..++..+...|..++...+.  ........+...+..-+++.....+...+.++..+....+.....++
T Consensus       657 ~v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i  736 (1176)
T KOG1248|consen  657 TVDPEFENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLI  736 (1176)
T ss_pred             HhhHHhhccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHH
Confidence            3444454666888999999999999988422  22233355666666667777888899999999988866552222233


Q ss_pred             HhCCHHHHHHhcCCCCcchHhHHHHHHhHhhc-------CCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHH
Q 011328          240 EAGVCPRLVELLRHPSPSVLIPALRTVGNIVT-------GDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNI  312 (488)
Q Consensus       240 ~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~-------~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl  312 (488)
                      ...+.+.++. ++..+...|..+..+|..++.       +++. ....++ .+++.+...+-.. ...++...+.++..+
T Consensus       737 ~k~I~EvIL~-~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~-~~~~ln-efl~~Isagl~gd-~~~~~as~Ivai~~i  812 (1176)
T KOG1248|consen  737 PKLIPEVILS-LKEVNVKARRNAFALLVFIGAIQSSLDDGNEP-ASAILN-EFLSIISAGLVGD-STRVVASDIVAITHI  812 (1176)
T ss_pred             HHHHHHHHHh-cccccHHHHhhHHHHHHHHHHHHhhhcccccc-hHHHHH-HHHHHHHhhhccc-HHHHHHHHHHHHHHH
Confidence            3233344444 477788888898888888873       1111 011111 2333333333333 333333334455554


Q ss_pred             hcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHH
Q 011328          313 TAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLE  392 (488)
Q Consensus       313 ~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~  392 (488)
                      ..........-.-.+++..+..+|.+.+.+++..|+..+..++............+ .+++.+..+.++...+++..+-.
T Consensus       813 l~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~-~LL~sll~ls~d~k~~~r~Kvr~  891 (1176)
T KOG1248|consen  813 LQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLE-ELLPSLLALSHDHKIKVRKKVRL  891 (1176)
T ss_pred             HHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHH-HHHHHHHHHHHhhhHHHHHHHHH
Confidence            43222222222223466677788889999999999999999998765554444332 46788888888878888888888


Q ss_pred             HHHHHHHhhh
Q 011328          393 GLENILKAGE  402 (488)
Q Consensus       393 ~L~~l~~~~~  402 (488)
                      .|..++....
T Consensus       892 LlekLirkfg  901 (1176)
T KOG1248|consen  892 LLEKLIRKFG  901 (1176)
T ss_pred             HHHHHHHHhC
Confidence            8888876543

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=97.90  E-value=4.9e-05  Score=56.21  Aligned_cols=87  Identities=28%  Similarity=0.443  Sum_probs=69.4

Q ss_pred             HHHHHHhh-cCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHH
Q 011328           75 VPRFIEFL-SRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDL  153 (488)
Q Consensus        75 i~~L~~lL-~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~  153 (488)
                      ++.|++.| ++++ +.+|..++++|+.+-.  +         ..++.|..+++++++.+|..|+++|+.+-         
T Consensus         1 i~~L~~~l~~~~~-~~vr~~a~~~L~~~~~--~---------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~---------   59 (88)
T PF13646_consen    1 IPALLQLLQNDPD-PQVRAEAARALGELGD--P---------EAIPALIELLKDEDPMVRRAAARALGRIG---------   59 (88)
T ss_dssp             HHHHHHHHHTSSS-HHHHHHHHHHHHCCTH--H---------HHHHHHHHHHTSSSHHHHHHHHHHHHCCH---------
T ss_pred             CHHHHHHHhcCCC-HHHHHHHHHHHHHcCC--H---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhC---------
Confidence            57889999 6666 9999999999995432  1         34899999999999999999999999983         


Q ss_pred             HHhcCChHHHHHHhcccccHhHHHHHHHHHH
Q 011328          154 VLSNGALMPLLAQFNEHAKLSMLRNATWTLS  184 (488)
Q Consensus       154 ~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~  184 (488)
                        ....++.|.+.+.++.+..++..|..+|+
T Consensus        60 --~~~~~~~L~~~l~~~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   60 --DPEAIPALIKLLQDDDDEVVREAAAEALG   88 (88)
T ss_dssp             --HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred             --CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence              12367889998966667777888888874

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=97.90  E-value=4.1e-05  Score=56.61  Aligned_cols=86  Identities=31%  Similarity=0.497  Sum_probs=69.8

Q ss_pred             HHHHHHHh-cCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhH
Q 011328           32 LPAMVAGV-WSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR  110 (488)
Q Consensus        32 i~~l~~~L-~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~  110 (488)
                      ||.|++.| +++++.++..++++|.++-.            ..+++.|++++++++ +.+|..|+++|+.+-.       
T Consensus         1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~------------~~~~~~L~~~l~d~~-~~vr~~a~~aL~~i~~-------   60 (88)
T PF13646_consen    1 IPALLQLLQNDPDPQVRAEAARALGELGD------------PEAIPALIELLKDED-PMVRRAAARALGRIGD-------   60 (88)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHCCTH------------HHHHHHHHHHHTSSS-HHHHHHHHHHHHCCHH-------
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHcCC------------HhHHHHHHHHHcCCC-HHHHHHHHHHHHHhCC-------
Confidence            57899999 78999999999999995321            135899999998888 9999999999998732       


Q ss_pred             HHHhCCCHHHHHHhhCC-CCHHHHHHHHHHHh
Q 011328          111 VVIDHGAVPIFVRLLSS-PTDDVREQAVWALG  141 (488)
Q Consensus       111 ~~~~~g~i~~L~~~L~~-~~~~v~~~a~~~L~  141 (488)
                          ...++.|.+++.+ ++..+|..|+.+|+
T Consensus        61 ----~~~~~~L~~~l~~~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   61 ----PEAIPALIKLLQDDDDEVVREAAAEALG   88 (88)
T ss_dssp             ----HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence                2368999998887 45667999988875

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]

Probab=97.89  E-value=0.0046  Score=62.67  Aligned_cols=324  Identities=12%  Similarity=0.091  Sum_probs=191.0

Q ss_pred             HHHHhc-CCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHH
Q 011328           35 MVAGVW-SDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVI  113 (488)
Q Consensus        35 l~~~L~-s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~  113 (488)
                      +...+. ++.|....++.+.+....+.. .... . ...-++...+..+..+..+-++..|++++...++  ++.... .
T Consensus       454 ~~~~l~~~e~P~Ll~Ra~~~i~~fs~~~-~~~~-~-~~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~--~~vl~~-~  527 (1005)
T KOG2274|consen  454 IDNGLVYQESPFLLLRAFLTISKFSSST-VINP-Q-LLQHFLNATVNALTMDVPPPVKISAVRAFCGYCK--VKVLLS-L  527 (1005)
T ss_pred             HHhhcccccCHHHHHHHHHHHHHHHhhh-ccch-h-HHHHHHHHHHHhhccCCCCchhHHHHHHHHhccC--ceeccc-c
Confidence            334443 566777778888888776542 1111 1 1122445555666555547889999999888874  222111 2


Q ss_pred             hCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHh-cccccHhHHHHHHHHHHHhhcCCCC
Q 011328          114 DHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQF-NEHAKLSMLRNATWTLSNFCRGKPQ  192 (488)
Q Consensus       114 ~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll-~~~~~~~v~~~a~~~L~~l~~~~~~  192 (488)
                      ..+++..|.++....+.++....+.+|+..+..+|+.... .+..+.+-.+.+. ..++|+.+...+-.++..++... .
T Consensus       528 ~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as-~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~-~  605 (1005)
T KOG2274|consen  528 QPMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAAS-MESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIA-A  605 (1005)
T ss_pred             chHHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhhhh-hhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH-H
Confidence            3467888888888888999999999999999988875333 3444455444443 35567777777777777777632 2


Q ss_pred             CChhhhhchHHHHHHhhccCC----hhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhc-CCCCcchHhHHHHHHh
Q 011328          193 PLFEQTRPALPALERLIHSND----DEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL-RHPSPSVLIPALRTVG  267 (488)
Q Consensus       193 ~~~~~~~~~~~~l~~ll~~~~----~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL-~~~~~~v~~~a~~~L~  267 (488)
                      ..-......+|.++..+..++    ......++..|..+.++.+.-....+-.-.++.+.++. .+.+..+...+-.||.
T Consensus       606 ~~g~m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLr  685 (1005)
T KOG2274|consen  606 NYGPMQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLR  685 (1005)
T ss_pred             hhcchHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHH
Confidence            222334568899999998765    66677788888877765443333333335677777775 4567788889999999


Q ss_pred             HhhcCCchhhHHHhhCC------ChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHH-HHhcCC
Q 011328          268 NIVTGDDMQTQCIINHQ------ALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVN-LLLNAE  340 (488)
Q Consensus       268 ~l~~~~~~~~~~~~~~~------~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~-ll~~~~  340 (488)
                      .+.....++...--..+      ++..+-++|+...+......+...+..+..+-+......++. ++..++. +-+...
T Consensus       686 a~Is~~~eq~~t~~~e~g~~~~yImqV~sqLLdp~~sds~a~~VG~lV~tLit~a~~el~~n~d~-IL~Avisrmq~ae~  764 (1005)
T KOG2274|consen  686 ALISVTLEQLLTWHDEPGHNLWYIMQVLSQLLDPETSDSAAAFVGPLVLTLITHASSELGPNLDQ-ILRAVISRLQQAET  764 (1005)
T ss_pred             HHHhcCHHHHHhhccCCCccHHHHHHHHHHHcCCccchhHHHHHhHHHHHHHHHHHHHhchhHHH-HHHHHHHHHHHhhh
Confidence            98876554433222222      233344444333122222222333333333222222222221 3333333 333446


Q ss_pred             hhHHHHHHHHHHHhccCCCHHHHHHHH
Q 011328          341 FEIKKEAAWAISNATSGGSNEQIKFLV  367 (488)
Q Consensus       341 ~~v~~~a~~aL~~l~~~~~~~~~~~l~  367 (488)
                      ..+.+.-..+++++...........|.
T Consensus       765 lsviQsLi~VfahL~~t~~~~~l~FL~  791 (1005)
T KOG2274|consen  765 LSVIQSLIMVFAHLVHTDLDQLLNFLS  791 (1005)
T ss_pred             HHHHHHHHHHHHHHhhCCHHHHHHHHH
Confidence            778888888888888755433444443

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=97.85  E-value=3.6e-05  Score=50.98  Aligned_cols=55  Identities=22%  Similarity=0.552  Sum_probs=47.4

Q ss_pred             hhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHh
Q 011328          299 KSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNA  354 (488)
Q Consensus       299 ~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l  354 (488)
                      +.+|..|+++|++++...++....... .+++.|+.++.+++++||..|+++|++|
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~~~~-~~~~~L~~~L~d~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQPYLP-ELLPALIPLLQDDDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHHHHH-HHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHHHHH-HHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence            468999999999998876777666544 5999999999999999999999999875

...

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.79  E-value=0.026  Score=58.11  Aligned_cols=391  Identities=14%  Similarity=0.104  Sum_probs=205.7

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhc-CCCChhHHHHHHHHHHHhcCCCchhhHH
Q 011328           33 PAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLS-RDDFPQLQFEAAWALTNIASGTSENTRV  111 (488)
Q Consensus        33 ~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~-~~~~~~v~~~a~~~L~~l~~~~~~~~~~  111 (488)
                      +.+...++|+.--.|-+||+.+..+.+-+ -..  ...-..++....+.|. +.+ -.|+..|+.+|..+....+.....
T Consensus       465 ~hVfP~f~s~~g~Lrarac~vl~~~~~~d-f~d--~~~l~~ale~t~~~l~~d~~-lPV~VeAalALq~fI~~~~~~~e~  540 (1010)
T KOG1991|consen  465 NHVFPEFQSPYGYLRARACWVLSQFSSID-FKD--PNNLSEALELTHNCLLNDNE-LPVRVEAALALQSFISNQEQADEK  540 (1010)
T ss_pred             HHhhHhhcCchhHHHHHHHHHHHHHHhcc-CCC--hHHHHHHHHHHHHHhccCCc-CchhhHHHHHHHHHHhcchhhhhh
Confidence            34455556777788999999999987543 111  1222345666677777 555 789999999999998855544343


Q ss_pred             HHhC--CCHHHHHHhhCC-CCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhccc--c---cHhHHHHHHHHH
Q 011328          112 VIDH--GAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEH--A---KLSMLRNATWTL  183 (488)
Q Consensus       112 ~~~~--g~i~~L~~~L~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~--~---~~~v~~~a~~~L  183 (488)
                      +...  +.++.|+.+.+. ++..+....=..++..+..-..+...+. .+......+.+..+  .   +.+-...|..+|
T Consensus       541 ~~~hvp~~mq~lL~L~ne~End~Lt~vme~iV~~fseElsPfA~eL~-q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL  619 (1010)
T KOG1991|consen  541 VSAHVPPIMQELLKLSNEVENDDLTNVMEKIVCKFSEELSPFAVELC-QNLAETFLKVLQTSEDEDESDDDKAIAASGIL  619 (1010)
T ss_pred             HhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHhhchhHHHHH-HHHHHHHHHHHhccCCCCccchHHHHHHHHHH
Confidence            3322  455666666665 3333333222333444433222222222 23444555666321  1   222233344444


Q ss_pred             HHhh---cCCCCC---ChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcc
Q 011328          184 SNFC---RGKPQP---LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPS  257 (488)
Q Consensus       184 ~~l~---~~~~~~---~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~  257 (488)
                      ..+.   ..-+..   .......++|.+-..+++.-.++-+.++..+.++....++....+.  ++++.+.+.+....-.
T Consensus       620 ~Ti~Til~s~e~~p~vl~~le~~~l~vi~~iL~~~i~dfyeE~~ei~~~~t~~~~~Isp~mW--~ll~li~e~~~~~~~d  697 (1010)
T KOG1991|consen  620 RTISTILLSLENHPEVLKQLEPIVLPVIGFILKNDITDFYEELLEIVSSLTFLSKEISPIMW--GLLELILEVFQDDGID  697 (1010)
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhcccCHHHH--HHHHHHHHHHhhhhHH
Confidence            3332   221111   1122345666666777777778888888888777655443333233  6778888888777666


Q ss_pred             hHhHHHHHHhHhhcCCchhhHHHhhC-C----ChHHHHHHhcccc-hhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHH
Q 011328          258 VLIPALRTVGNIVTGDDMQTQCIINH-Q----ALPCLLDLLTQNY-KKSIKKEACWTISNITAGNVNQIQAIIEAGIIGP  331 (488)
Q Consensus       258 v~~~a~~~L~~l~~~~~~~~~~~~~~-~----~~~~L~~lL~~~~-~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~  331 (488)
                      .-....-+|.|.......   .+.+. .    +...+...+.+.. ...-...|+..+.-+........+..+.. ++..
T Consensus       698 yf~d~~~~l~N~vt~g~~---~~~s~~~y~~il~~i~~~~l~~e~~~D~d~~~a~kLle~iiL~~kg~~dq~ipl-f~~~  773 (1010)
T KOG1991|consen  698 YFTDMMPALHNYVTYGTP---SLLSNPDYLQILLEIIKKVLTSENGEDSDCESACKLLEVIILNCKGLLDQYIPL-FLEL  773 (1010)
T ss_pred             HHHHHHHHHhhheeeCch---hhhccchHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhcCcHhhHhHH-HHHH
Confidence            777778888876653221   11111 1    2333444444421 22233446666665544212222221111 2222


Q ss_pred             HHHHHhc--CChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCC-----CCHHHHHHHHHHHHHHHHhhhhh
Q 011328          332 LVNLLLN--AEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNC-----PDPRIVTVCLEGLENILKAGEAE  404 (488)
Q Consensus       332 L~~ll~~--~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~-----~~~~v~~~al~~L~~l~~~~~~~  404 (488)
                      .+.-+..  .+...+..++.+..|............|-+.|....+..+.-+     ....-++.++-+|..++..++..
T Consensus       774 a~~~l~~~~e~s~~~~~~leVvinalyynP~ltL~iLe~~~~~~~ff~~wf~~~~~~~~~HDkKlcvL~l~tli~l~~~~  853 (1010)
T KOG1991|consen  774 ALSRLTREVETSELRVMLLEVVINALYYNPKLTLGILENQGFLNNFFTLWFQFINQFKKVHDKKLCVLGLLTLISLGQDP  853 (1010)
T ss_pred             HHHHHhccccchHHHHHHHHHHHHHHHcCcHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccccC
Confidence            2333333  3567788888888887776666667777777776554443221     11112344555666666665332


Q ss_pred             hccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHH
Q 011328          405 KNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAV  445 (488)
Q Consensus       405 ~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~~~~~v~~~a~  445 (488)
                      ..         ....+.  +..+.+..+..+--..++.+|.
T Consensus       854 ~~---------~~e~l~--~l~~~lv~L~~~Lp~ala~ra~  883 (1010)
T KOG1991|consen  854 QL---------PSEVLG--QLGPALVELLLSLPEALAERAQ  883 (1010)
T ss_pred             Cc---------hHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence            21         122222  4567777776665444544443

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=97.78  E-value=0.013  Score=57.11  Aligned_cols=297  Identities=15%  Similarity=0.103  Sum_probs=168.1

Q ss_pred             CHHHHHHHHHHHHHHhccCCCcc----HHHHHHcCCHHHHHHhhcCC----C--ChhHHHHHHHHHHHhcCCCc-hhhHH
Q 011328           43 DRNIQLDATTQFRKLLSIERSPP----INEVIQSGVVPRFIEFLSRD----D--FPQLQFEAAWALTNIASGTS-ENTRV  111 (488)
Q Consensus        43 ~~~~~~~a~~~L~~l~~~~~~~~----~~~~~~~~~i~~L~~lL~~~----~--~~~v~~~a~~~L~~l~~~~~-~~~~~  111 (488)
                      +.......+..+..++.......    .....+..+++.+.++....    .  ++.+...+..++..+...-+ +..+.
T Consensus        56 ~~~~~~~il~tl~~~~~~~~~~~~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~  135 (415)
T PF12460_consen   56 SSDYCHAILSTLQSLLEKKQEDKQFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQE  135 (415)
T ss_pred             ChHHHHHHHHHHHHHHHhcccccccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHH
Confidence            55666677777777765442222    23333445788887776322    1  13555666666666665333 33333


Q ss_pred             HHhCCCHHHHHHhhC----------CC------CHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhH
Q 011328          112 VIDHGAVPIFVRLLS----------SP------TDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSM  175 (488)
Q Consensus       112 ~~~~g~i~~L~~~L~----------~~------~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v  175 (488)
                      +     +..+..+..          ..      ..........+++.+-.+..   -. .....+..++.+.....++..
T Consensus       136 ~-----~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~---~~-~~~~ll~~l~~~~~~~~~~~~  206 (415)
T PF12460_consen  136 I-----LDELYSLFLSPKSFSPFQPSSSTISEQQSRLVILFSAILCSLRKDVS---LP-DLEELLQSLLNLALSSEDEFS  206 (415)
T ss_pred             H-----HHHHHHHHccccccCCCCccccccccccccHHHHHHHHHHcCCcccC---cc-CHHHHHHHHHHHHHcCCChHH
Confidence            3     223333221          01      11222222233333322211   00 111256677777766667888


Q ss_pred             HHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhh-ccCChhHH----HHHHHHHHHhccCCchhHHHHHHhCCHHHHHHh
Q 011328          176 LRNATWTLSNFCRGKPQPLFEQTRPALPALERLI-HSNDDEVL----TDACWALSYLSDGTNDKIQAVIEAGVCPRLVEL  250 (488)
Q Consensus       176 ~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll-~~~~~~v~----~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~l  250 (488)
                      +..++.+++.+...-+...  ....++..+..-+ ...+...+    +...|+...+.-.......     ..+..|+.+
T Consensus       207 ~~~~~~~la~LvNK~~~~~--~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~-----~~~~~L~~l  279 (415)
T PF12460_consen  207 RLAALQLLASLVNKWPDDD--DLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLAT-----ELLDKLLEL  279 (415)
T ss_pred             HHHHHHHHHHHHcCCCChh--hHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHH-----HHHHHHHHH
Confidence            8899999988886532222  3345555555544 22333333    3344444444433322222     455678888


Q ss_pred             cCCCCcchHhHHHHHHhHhhcCCc--------hhhHHHhhCC----ChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHH
Q 011328          251 LRHPSPSVLIPALRTVGNIVTGDD--------MQTQCIINHQ----ALPCLLDLLTQNYKKSIKKEACWTISNITAGNVN  318 (488)
Q Consensus       251 L~~~~~~v~~~a~~~L~~l~~~~~--------~~~~~~~~~~----~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~  318 (488)
                      +.+  +++...+...++-+....+        ...+.+.+..    ++|.+++..+.. +...|.....+|+.+..+-|.
T Consensus       280 L~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~-~~~~k~~yL~ALs~ll~~vP~  356 (415)
T PF12460_consen  280 LSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEA-DDEIKSNYLTALSHLLKNVPK  356 (415)
T ss_pred             hCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhc-ChhhHHHHHHHHHHHHhhCCH
Confidence            877  5678888888888887622        2233333333    455555555655 555788889999999986554


Q ss_pred             HHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCC
Q 011328          319 QIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG  358 (488)
Q Consensus       319 ~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~  358 (488)
                      ..-.---..++|.|++.|..++.+++..++.+|..+....
T Consensus       357 ~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~  396 (415)
T PF12460_consen  357 SVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA  396 (415)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence            3322222358999999999999999999999999998765

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]

Probab=97.71  E-value=0.0043  Score=58.40  Aligned_cols=404  Identities=12%  Similarity=0.087  Sum_probs=202.3

Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHHhccCCCcc--------------HHHHHHcC---CHHHHHHhhcCCCChhHHHHHHHH
Q 011328           35 MVAGVWSDDRNIQLDATTQFRKLLSIERSPP--------------INEVIQSG---VVPRFIEFLSRDDFPQLQFEAAWA   97 (488)
Q Consensus        35 l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~--------------~~~~~~~~---~i~~L~~lL~~~~~~~v~~~a~~~   97 (488)
                      +.-.|+..++..+..|+..+..++.+. ...              ...++...   .-..|+-.|..+.++.+..++++|
T Consensus        52 ~~l~lkd~~~~~ra~alqv~~~~l~gs-k~fls~a~~~~~~~ftpf~v~~a~si~~~~r~l~~~l~~e~~~~~~tq~~kc  130 (728)
T KOG4535|consen   52 MTLTLKDPSPKTRACALQVLSAILEGS-KQFLSVAEDTSDHAFTPFSVMIACSIRELHRCLLLALVAESSSQTVTQIIKC  130 (728)
T ss_pred             eEEecCCCChhHHHHHHHHHHHHHHhh-HHHHHHHhccCCcCCCchHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHH
Confidence            444567888889989999888887653 111              11112111   222344445555447888999999


Q ss_pred             HHHhcCCCchhhHHHH-hCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcC------------------
Q 011328           98 LTNIASGTSENTRVVI-DHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNG------------------  158 (488)
Q Consensus        98 L~~l~~~~~~~~~~~~-~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~------------------  158 (488)
                      |.++....|-.+-.+- -..++..+..++++.++.++-.++..++.+...+...-+.-...|                  
T Consensus       131 la~lv~~~p~~~l~~~~~~~~~~~ik~~i~~~d~~v~vs~l~~~~~~v~t~~~~pei~~~~~~~~s~~n~~~~h~s~~~~  210 (728)
T KOG4535|consen  131 LANLVSNAPYDRLKLSLLTKVWNQIKPYIRHKDVNVRVSSLTLLGAIVSTHAPLPEVQLLLQQPCSSSNSATPHLSPPDW  210 (728)
T ss_pred             HHHHHhcCchHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHhcCCCCHHHHHHhcCCCccccccCCCCCChHH
Confidence            9999996666555442 223455666678889999999999999888653321111100000                  


Q ss_pred             -----ChHHHHHHhccc---------------------------------------ccHhHHHHHHHHHHHhhcCCCCCC
Q 011328          159 -----ALMPLLAQFNEH---------------------------------------AKLSMLRNATWTLSNFCRGKPQPL  194 (488)
Q Consensus       159 -----~l~~L~~ll~~~---------------------------------------~~~~v~~~a~~~L~~l~~~~~~~~  194 (488)
                           .-+.+.+.-..+                                       ....++-.+...|..++++.. ..
T Consensus       211 ~~~l~~~~~~~e~~~~~~~~~~~~~~~i~~~~~i~~~~~~~s~~~~~~~~~~~~~~~ps~~rle~~qvl~~~a~~~~-~~  289 (728)
T KOG4535|consen  211 WKKLPAGPSLEETSVSSPKGSSEPCWLIRLCISIVVLPKEDSCSGSDAGSAAGSTYEPSPMRLEALQVLTLLARYFS-MT  289 (728)
T ss_pred             HHhcCCCchhhhhccCCccCCCCCcceeeeeeeeeecCCccccchhhHHhhhcCccCCchhHHHHHHHHHHHHHHHH-HH
Confidence                 000011100000                                       001122223333322222210 00


Q ss_pred             hhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccC-----CchhHHHHHHhCCHHHHH------Hh-cCCCCcchHhHH
Q 011328          195 FEQTRPALPALERLIHSNDDEVLTDACWALSYLSDG-----TNDKIQAVIEAGVCPRLV------EL-LRHPSPSVLIPA  262 (488)
Q Consensus       195 ~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~-----~~~~~~~~~~~~~l~~L~------~l-L~~~~~~v~~~a  262 (488)
                      ......+...+...+...++.++..+..++..+...     .++..+.-...+.+-.+.      .. -++..+..+..+
T Consensus       290 ~~~~~~l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~~l~~p~~~~~YDs~~~Tl~~s~  369 (728)
T KOG4535|consen  290 QAYLMELGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWTMMLNGPLPRALYDSEHPTLQASA  369 (728)
T ss_pred             HHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHHHHccCCChhhhhhhcCCCchhHH
Confidence            001111222222233356778888887777765532     111111111112111111      01 122335566777


Q ss_pred             HHHHhHhhcCCchhhHHHhhCCChHHHHHHh----cccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhc
Q 011328          263 LRTVGNIVTGDDMQTQCIINHQALPCLLDLL----TQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN  338 (488)
Q Consensus       263 ~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL----~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~  338 (488)
                      |..+.++.......    +.++--.....++    +++ +.-++.+|.++..-+.-+..-......-.+....+...+.+
T Consensus       370 Cdals~i~~~~f~~----lpn~~~T~~~~Fl~GC~d~~-~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d  444 (728)
T KOG4535|consen  370 CDALSSILPEAFSN----LPNDRQTLCITFLLGCNDSK-NRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLED  444 (728)
T ss_pred             HHHHhhcCchhhcC----CCCcchhhhHHHHhcccchH-HHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhh
Confidence            77777776422111    0111111111111    233 55577778887776666522222222223456666777777


Q ss_pred             CChhHHHHHHHHHHHhccC---C--CHH-HHHHHHHCCChHHHHhhcC---CCCHHHHHHHHHHHHHHHHhhhhhhccCC
Q 011328          339 AEFEIKKEAAWAISNATSG---G--SNE-QIKFLVSQGCIKPLCDLLN---CPDPRIVTVCLEGLENILKAGEAEKNMGN  409 (488)
Q Consensus       339 ~~~~v~~~a~~aL~~l~~~---~--~~~-~~~~l~~~~~i~~L~~ll~---~~~~~v~~~al~~L~~l~~~~~~~~~~~~  409 (488)
                      +...+|.+++|+++|+...   +  +++ ....+.. -.+..+...-.   ....+++.++.++|+++...-+..++.. 
T Consensus       445 ~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg-~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~-  522 (728)
T KOG4535|consen  445 KSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSG-LLLLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPT-  522 (728)
T ss_pred             HhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHH-HHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhcc-
Confidence            7888999999999999742   1  111 2222111 12333333222   3456899999999999987655333221 


Q ss_pred             CCccchHHHHHHhhccHHHHHH-hhcCCCHHHHHHHHHHHHHhcCCC
Q 011328          410 TGGVNLFAQAIDDAEGLEKIEN-LQSHDNTEIYEKAVKILETYWVEE  455 (488)
Q Consensus       410 ~~~~~~~~~~l~~~g~~~~L~~-l~~~~~~~v~~~a~~~l~~~~~~~  455 (488)
                            +.+.++  |.+.++-. ..-..+-+|+=-|-..+.++|..+
T Consensus       523 ------~~e~~~--~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~  561 (728)
T KOG4535|consen  523 ------FAEIIE--ESIQALISTVLTEAAMKVRWNACYAMGNLFKNP  561 (728)
T ss_pred             ------HHHHHH--HHHHhcccceecccccccchHHHHHHHHhhcCc
Confidence                  222222  22333322 234456778888888899988754

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.69  E-value=0.0029  Score=62.79  Aligned_cols=328  Identities=13%  Similarity=0.123  Sum_probs=166.1

Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHH
Q 011328           34 AMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVI  113 (488)
Q Consensus        34 ~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~  113 (488)
                      .+-+.|+++++-+|-..++.|+++=  + .+    ++ ...+|.+...|.+.. ..+|..|..++..|-...    +.++
T Consensus       103 a~RkDLQHPNEyiRG~TLRFLckLk--E-~E----Ll-epl~p~IracleHrh-sYVRrNAilaifsIyk~~----~~L~  169 (948)
T KOG1058|consen  103 AYRKDLQHPNEYIRGSTLRFLCKLK--E-PE----LL-EPLMPSIRACLEHRH-SYVRRNAILAIFSIYKNF----EHLI  169 (948)
T ss_pred             HHhhhccCchHhhcchhhhhhhhcC--c-HH----Hh-hhhHHHHHHHHhCcc-hhhhhhhheeehhHHhhh----hhhc
Confidence            4456677888888888888888842  2 22    22 357889999999999 899999999998887621    1121


Q ss_pred             hCCCHHHHHHhhC-CCCHHHHHHHHHHHhhhhCCCchhHHHHH-------hcCC--hHHHHHHhcc--cccHhHHHHHHH
Q 011328          114 DHGAVPIFVRLLS-SPTDDVREQAVWALGNVAGDSPKCRDLVL-------SNGA--LMPLLAQFNE--HAKLSMLRNATW  181 (488)
Q Consensus       114 ~~g~i~~L~~~L~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-------~~~~--l~~L~~ll~~--~~~~~v~~~a~~  181 (488)
                      . ++-+.+-.+|. ..++..+++|...|...-..  ..-..+.       ..|.  -..+++++.+  ..++..+..-..
T Consensus       170 p-DapeLi~~fL~~e~DpsCkRNAFi~L~~~D~E--rAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~~~~i~  246 (948)
T KOG1058|consen  170 P-DAPELIESFLLTEQDPSCKRNAFLMLFTTDPE--RALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEKARYIR  246 (948)
T ss_pred             C-ChHHHHHHHHHhccCchhHHHHHHHHHhcCHH--HHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHhhHHHH
Confidence            1 22223333333 35666666666555443110  0000000       0000  0011111110  112333333333


Q ss_pred             HHHHhhcCCCCCChhhhhchHHHHHHhhc-cCChhHHHHHHHHHHHhcc-CCchhHHH---------------HHHhCCH
Q 011328          182 TLSNFCRGKPQPLFEQTRPALPALERLIH-SNDDEVLTDACWALSYLSD-GTNDKIQA---------------VIEAGVC  244 (488)
Q Consensus       182 ~L~~l~~~~~~~~~~~~~~~~~~l~~ll~-~~~~~v~~~al~~L~~l~~-~~~~~~~~---------------~~~~~~l  244 (488)
                      ++.++.............+      .+.. ++++.....|..++..+.. .++++...               +++ |++
T Consensus       247 ~i~~lL~stssaV~fEaa~------tlv~lS~~p~alk~Aa~~~i~l~~kesdnnvklIvldrl~~l~~~~~~il~-~l~  319 (948)
T KOG1058|consen  247 CIYNLLSSTSSAVIFEAAG------TLVTLSNDPTALKAAASTYIDLLVKESDNNVKLIVLDRLSELKALHEKILQ-GLI  319 (948)
T ss_pred             HHHHHHhcCCchhhhhhcc------eEEEccCCHHHHHHHHHHHHHHHHhccCcchhhhhHHHHHHHhhhhHHHHH-HHH
Confidence            3333332220000000000      0000 1233333333333333331 11111111               111 445


Q ss_pred             HHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHh------cccchhhHHHHHHHHHHHHhcCCHH
Q 011328          245 PRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLL------TQNYKKSIKKEACWTISNITAGNVN  318 (488)
Q Consensus       245 ~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL------~~~~~~~v~~~a~~~L~nl~~~~~~  318 (488)
                      --++..|.+++-+++..++.+...++....  ...     ++..|-+-+      .+..+.+.|.....++..++...++
T Consensus       320 mDvLrvLss~dldvr~Ktldi~ldLvssrN--ved-----iv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~  392 (948)
T KOG1058|consen  320 MDVLRVLSSPDLDVRSKTLDIALDLVSSRN--VED-----IVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPE  392 (948)
T ss_pred             HHHHHHcCcccccHHHHHHHHHHhhhhhcc--HHH-----HHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChH
Confidence            556677888888999999888877776332  111     111222211      1222456788889999999887676


Q ss_pred             HHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCC-CCHHHHHHHHHHHHHH
Q 011328          319 QIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNC-PDPRIVTVCLEGLENI  397 (488)
Q Consensus       319 ~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~-~~~~v~~~al~~L~~l  397 (488)
                      ..     ..+++.|++.+.+.++......+..+......- +..+.     ..++.|.+-+.. ...++...++|.++..
T Consensus       393 ~a-----atvV~~ll~fisD~N~~aas~vl~FvrE~iek~-p~Lr~-----~ii~~l~~~~~~irS~ki~rgalwi~GeY  461 (948)
T KOG1058|consen  393 VA-----ATVVSLLLDFISDSNEAAASDVLMFVREAIEKF-PNLRA-----SIIEKLLETFPQIRSSKICRGALWILGEY  461 (948)
T ss_pred             HH-----HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhC-chHHH-----HHHHHHHHhhhhhcccccchhHHHHHHHH
Confidence            43     346888999999887654444444444433321 22222     345555554442 4567778888888877


Q ss_pred             HHhhh
Q 011328          398 LKAGE  402 (488)
Q Consensus       398 ~~~~~  402 (488)
                      +....
T Consensus       462 ce~~~  466 (948)
T KOG1058|consen  462 CEGLS  466 (948)
T ss_pred             HhhhH
Confidence            66544

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.68  E-value=0.0032  Score=62.79  Aligned_cols=140  Identities=12%  Similarity=0.096  Sum_probs=84.6

Q ss_pred             chHHHHHHhhcc-CChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhH
Q 011328          200 PALPALERLIHS-NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQ  278 (488)
Q Consensus       200 ~~~~~l~~ll~~-~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~  278 (488)
                      ..++.|..+|+. +.-+-..+...++..+....++..+     .++..|...+.+.  +...-+.++|.-+....+..  
T Consensus       391 ~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe-----~~L~~LCefIEDc--e~~~i~~rILhlLG~EgP~a--  461 (865)
T KOG1078|consen  391 VMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKE-----RGLEHLCEFIEDC--EFTQIAVRILHLLGKEGPKA--  461 (865)
T ss_pred             HHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchhh-----HHHHHHHHHHHhc--cchHHHHHHHHHHhccCCCC--
Confidence            344455555554 2345566666666666654444333     3344455544432  23444555555554433321  


Q ss_pred             HHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhc
Q 011328          279 CIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNAT  355 (488)
Q Consensus       279 ~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~  355 (488)
                       ......+..+.....-. +..+|.+|..++.++...++..     ...+...|.+++.+.|.++|..|..+|.++.
T Consensus       462 -~~Pskyir~iyNRviLE-n~ivRaaAv~alaKfg~~~~~l-----~~sI~vllkRc~~D~DdevRdrAtf~l~~l~  531 (865)
T KOG1078|consen  462 -PNPSKYIRFIYNRVILE-NAIVRAAAVSALAKFGAQDVVL-----LPSILVLLKRCLNDSDDEVRDRATFYLKNLE  531 (865)
T ss_pred             -CCcchhhHHHhhhhhhh-hhhhHHHHHHHHHHHhcCCCCc-----cccHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence             12334555566655555 7889999999999998543332     2235667888999999999999999999986

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.64  E-value=0.011  Score=59.16  Aligned_cols=286  Identities=15%  Similarity=0.132  Sum_probs=143.6

Q ss_pred             CHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChh
Q 011328          117 AVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFE  196 (488)
Q Consensus       117 ~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~  196 (488)
                      ..+.+-.++++....+...+++++.++....+.  ...-   .+..+=-++ .+....+|-.|..+|..++...|.....
T Consensus       246 ~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r--~l~p---avs~Lq~fl-ssp~~~lRfaAvRtLnkvAm~~P~~v~~  319 (865)
T KOG1078|consen  246 LFPFLESCLRHKSEMVIYEAARAIVSLPNTNSR--ELAP---AVSVLQLFL-SSPKVALRFAAVRTLNKVAMKHPQAVTV  319 (865)
T ss_pred             HHHHHHHHHhchhHHHHHHHHHHHhhccccCHh--hcch---HHHHHHHHh-cCcHHHHHHHHHHHHHHHHHhCCccccc
Confidence            356666778888889999999999998654431  1111   333333334 7778889999999999999876544333


Q ss_pred             hhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchh
Q 011328          197 QTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQ  276 (488)
Q Consensus       197 ~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~  276 (488)
                      ..    .-+-.++.+.+..+...|..+|..-..  ......++  .-+..++.=+.++..-+...|..   .++...+..
T Consensus       320 cN----~elE~lItd~NrsIat~AITtLLKTG~--e~sv~rLm--~qI~~fv~disDeFKivvvdai~---sLc~~fp~k  388 (865)
T KOG1078|consen  320 CN----LDLESLITDSNRSIATLAITTLLKTGT--ESSVDRLM--KQISSFVSDISDEFKIVVVDAIR---SLCLKFPRK  388 (865)
T ss_pred             cc----hhHHhhhcccccchhHHHHHHHHHhcc--hhHHHHHH--HHHHHHHHhccccceEEeHHHHH---HHHhhccHH
Confidence            22    234455556666666666555544322  22222222  12333333333333333334444   444333322


Q ss_pred             hHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhcc
Q 011328          277 TQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS  356 (488)
Q Consensus       277 ~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~  356 (488)
                      .     .+.+..|..+|..+...+.++....++..++..+++...     .++..|+..+.+..  ...-+...|.-+..
T Consensus       389 ~-----~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe-----~~L~~LCefIEDce--~~~i~~rILhlLG~  456 (865)
T KOG1078|consen  389 H-----TVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKE-----RGLEHLCEFIEDCE--FTQIAVRILHLLGK  456 (865)
T ss_pred             H-----HHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchhh-----HHHHHHHHHHHhcc--chHHHHHHHHHHhc
Confidence            1     234555666665544566677777777776664444322     23444555554431  12223333333322


Q ss_pred             CCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCC
Q 011328          357 GGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHD  436 (488)
Q Consensus       357 ~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~~  436 (488)
                      .+.    ..-.....+..+.+.+.-.+..++..|..+|.++....+...                 ....-.+.+++.++
T Consensus       457 EgP----~a~~Pskyir~iyNRviLEn~ivRaaAv~alaKfg~~~~~l~-----------------~sI~vllkRc~~D~  515 (865)
T KOG1078|consen  457 EGP----KAPNPSKYIRFIYNRVILENAIVRAAAVSALAKFGAQDVVLL-----------------PSILVLLKRCLNDS  515 (865)
T ss_pred             cCC----CCCCcchhhHHHhhhhhhhhhhhHHHHHHHHHHHhcCCCCcc-----------------ccHHHHHHHHhcCc
Confidence            110    000111234444444444455556666666655541111110                 01123345555666


Q ss_pred             CHHHHHHHHHHHHHhc
Q 011328          437 NTEIYEKAVKILETYW  452 (488)
Q Consensus       437 ~~~v~~~a~~~l~~~~  452 (488)
                      +.+|+++|...+..+-
T Consensus       516 DdevRdrAtf~l~~l~  531 (865)
T KOG1078|consen  516 DDEVRDRATFYLKNLE  531 (865)
T ss_pred             hHHHHHHHHHHHHHhh
Confidence            6666666666555444

>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=97.64  E-value=0.14  Score=55.38  Aligned_cols=395  Identities=10%  Similarity=0.005  Sum_probs=200.4

Q ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhH
Q 011328           31 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR  110 (488)
Q Consensus        31 ~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~  110 (488)
                      .+..++..|.+....+|-.|+++|..+...++.-..+.-+.    ..+-.-+.++. ..||+.|+..++......++...
T Consensus       817 yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq----~~Vh~R~~Dss-asVREAaldLvGrfvl~~~e~~~  891 (1692)
T KOG1020|consen  817 YLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQ----EAVHGRLNDSS-ASVREAALDLVGRFVLSIPELIF  891 (1692)
T ss_pred             HHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHH----HHHHHhhccch-hHHHHHHHHHHhhhhhccHHHHH
Confidence            45568888888889999999999999988653222232232    33334445566 79999999999987775666555


Q ss_pred             HHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhc--ccccHhHHHHHHHHHHHhhc
Q 011328          111 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN--EHAKLSMLRNATWTLSNFCR  188 (488)
Q Consensus       111 ~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~--~~~~~~v~~~a~~~L~~l~~  188 (488)
                      +..     ..+..-..+....||..++..+..+|...|.+...      +....+++.  .++...++.-++.++.++.-
T Consensus       892 qyY-----~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i------~~~cakmlrRv~DEEg~I~kLv~etf~klWF  960 (1692)
T KOG1020|consen  892 QYY-----DQIIERILDTGVSVRKRVIKILRDICEETPDFSKI------VDMCAKMLRRVNDEEGNIKKLVRETFLKLWF  960 (1692)
T ss_pred             HHH-----HHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhH------HHHHHHHHHHhccchhHHHHHHHHHHHHHhc
Confidence            443     34445555678899999999999999888765332      233444443  33444589999999999887


Q ss_pred             CCCCC--ChhhhhchHHHHHHh-------hccCChhHHHHHHHHHHHhccCCchhHHHHHHh---CCHHHHHHhc-----
Q 011328          189 GKPQP--LFEQTRPALPALERL-------IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA---GVCPRLVELL-----  251 (488)
Q Consensus       189 ~~~~~--~~~~~~~~~~~l~~l-------l~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~---~~l~~L~~lL-----  251 (488)
                      .+...  .......-++..+..       .....+.+....+..-....  .....+.+...   ..+..+..++     
T Consensus       961 ~p~~~~~d~~~~~~kI~~~~~vv~~~~d~~~~~~eqLl~~ilk~~~~~~--~~~~~~~v~~~~v~~~~~L~~~cl~~~i~ 1038 (1692)
T KOG1020|consen  961 TPVPEVNDQPAKARKISLEVDVVMSQVDLMNDWLEQLLDHILKFYLLKT--MKESVKPVALAKVTHVLNLLTHCLVEKIS 1038 (1692)
T ss_pred             cCCCcccccHHHHHhhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHhhh--hhhhhhHHHHhhcchHHHHHHHHHHHHHH
Confidence            66222  111111112211111       11222222222222111110  00111111111   1112222221     


Q ss_pred             -------CCCCcchH-hHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhccc----chhhHHHHHHHHHHHHhc---CC
Q 011328          252 -------RHPSPSVL-IPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQN----YKKSIKKEACWTISNITA---GN  316 (488)
Q Consensus       252 -------~~~~~~v~-~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~----~~~~v~~~a~~~L~nl~~---~~  316 (488)
                             ..+...++ ...+.+|..++...+...    ....+..|...|.+.    ....+-...+.++....-   ..
T Consensus      1039 ev~~~~~~~~~~~~~~~~~lstL~~FskirP~Ll----t~khv~tL~PYL~s~~~t~~~~~fl~~vi~Ile~VlPlv~~~ 1114 (1692)
T KOG1020|consen 1039 EVESDDMNEEESEVRLLAYLSTLFVFSKIRPQLL----TKKHVITLQPYLTSKASTIEEAQFLYYVIQILECVLPLVANP 1114 (1692)
T ss_pred             hhhhHhhhcccchhHHHHHHHHHHHHHhcCchhc----cHHHHHHhhhHHhccccchHHHHHHHHHHHHHHHHhhhhccc
Confidence                   11222333 345566666666555322    113334455555443    233344444444433322   21


Q ss_pred             HHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccC--CCHHHHHHHHHC--CChHHHHhhcCCC----CHHHHH
Q 011328          317 VNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSG--GSNEQIKFLVSQ--GCIKPLCDLLNCP----DPRIVT  388 (488)
Q Consensus       317 ~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~--~~~~~~~~l~~~--~~i~~L~~ll~~~----~~~v~~  388 (488)
                      ++..-.    .+=..|+.++-.........|..+++.++..  .+..........  +.++.+..-..+.    ......
T Consensus      1115 sesfL~----sLEe~L~~~i~k~g~a~V~~~vsCl~sl~~k~~~~~~~v~~cf~~~~k~le~~k~s~~en~~~~~~p~l~ 1190 (1692)
T KOG1020|consen 1115 SESFLA----SLEEDLLKRIVKMGMATVVEAVSCLGSLATKRTDGAKVVKACFSCYLKLLEVIKSSNNENADIVNFPKLQ 1190 (1692)
T ss_pred             hHHHHH----HHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhccccccchhhhHHHH
Confidence            221111    1233455555555566667777778777753  122222221110  1111111111111    123455


Q ss_pred             HHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 011328          389 VCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYW  452 (488)
Q Consensus       389 ~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~~~~~v~~~a~~~l~~~~  452 (488)
                      +.+..++-++++++-............... ....+.+..|..+..+.+.+++.+|..-+..++
T Consensus      1191 RsiftlG~l~Ryfdf~~~~~~g~~~~~~~~-~~~e~v~~lL~~f~k~~~~~lR~~al~~Lg~~c 1253 (1692)
T KOG1020|consen 1191 RSIFTLGLLSRYFDFPKPSNDGKTFLQEGE-TLKEKVLILLMYFSKDKDGELRRKALINLGFIC 1253 (1692)
T ss_pred             HHHHHHHHHHHhccCCCccCCCccchhhhh-hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence            677777777776554433221111111112 233456677777777778888888888776654

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.62  E-value=0.009  Score=62.55  Aligned_cols=243  Identities=12%  Similarity=0.099  Sum_probs=153.8

Q ss_pred             HHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHh--CCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCc-hhHHHH
Q 011328           78 FIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVID--HGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSP-KCRDLV  154 (488)
Q Consensus        78 L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~--~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~  154 (488)
                      +.....+.++..+|..+.++|..++.. +.......+  ..+.+.|..-+++.....+...+.+|..|....+ +....+
T Consensus       658 v~~~~e~~~~~~vQkK~yrlL~~l~~~-~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i  736 (1176)
T KOG1248|consen  658 VDPEFENSSSTKVQKKAYRLLEELSSS-PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLI  736 (1176)
T ss_pred             hhHHhhccccHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHH
Confidence            334444443489999999999999984 332222211  1344566666666677778888888888876554 222222


Q ss_pred             HhcCChHHHHHHhcccccHhHHHHHHHHHHHhh--cCC---C-CCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhc
Q 011328          155 LSNGALMPLLAQFNEHAKLSMLRNATWTLSNFC--RGK---P-QPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLS  228 (488)
Q Consensus       155 ~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~--~~~---~-~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~  228 (488)
                      ..  .++.++-.+ ++.+...++.+..+|..++  ...   . .+.......+++.+...+-.....+....+-++..+.
T Consensus       737 ~k--~I~EvIL~~-Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il  813 (1176)
T KOG1248|consen  737 PK--LIPEVILSL-KEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHIL  813 (1176)
T ss_pred             HH--HHHHHHHhc-ccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHH
Confidence            21  344444444 7778888999999998888  222   1 2224455666666666655444444444455566555


Q ss_pred             cCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHH
Q 011328          229 DGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWT  308 (488)
Q Consensus       229 ~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~  308 (488)
                      ....+......-.++++.+.-.|.+++++++..|+..+..++...+...-......+++.+..+++.. ...+|..+-..
T Consensus       814 ~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~-k~~~r~Kvr~L  892 (1176)
T KOG1248|consen  814 QEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDH-KIKVRKKVRLL  892 (1176)
T ss_pred             HHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhh-hHHHHHHHHHH
Confidence            43322222222235667777778899999999999999999987775543333345788888888776 78888888888


Q ss_pred             HHHHhc-CCHHHHHHHHH
Q 011328          309 ISNITA-GNVNQIQAIIE  325 (488)
Q Consensus       309 L~nl~~-~~~~~~~~l~~  325 (488)
                      +-.+++ ...+..+.+..
T Consensus       893 lekLirkfg~~eLe~~~p  910 (1176)
T KOG1248|consen  893 LEKLIRKFGAEELESFLP  910 (1176)
T ss_pred             HHHHHHHhCHHHHHhhCH
Confidence            888877 34555555544

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []

Probab=97.57  E-value=0.021  Score=55.99  Aligned_cols=238  Identities=15%  Similarity=0.133  Sum_probs=151.0

Q ss_pred             ccHHHHHHHh----------cCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCC-----CChhHHHHH
Q 011328           30 ESLPAMVAGV----------WSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRD-----DFPQLQFEA   94 (488)
Q Consensus        30 ~~i~~l~~~L----------~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~-----~~~~v~~~a   94 (488)
                      +++..|++.-          .+.++.+...|+++|+|++-.. ....+.+.+.|..+.+++.|+..     + .++..-.
T Consensus        22 ~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s-~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~-~d~~Fl~   99 (446)
T PF10165_consen   22 EGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLS-PSARQIFVDLGLAEKLCERLKNYSDSSQP-SDVEFLD   99 (446)
T ss_pred             HHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCC-HHHHHHHHHcCcHHHHHHHHHcccccCCC-hhHHHHH
Confidence            6677776665          2467899999999999988765 56678888999999999999876     4 7888899


Q ss_pred             HHHHHHhcCCCchhhHHHHhC-CCHHHHHHhhCC-----------------CCHHHHHHHHHHHhhhhCCCchhHHHHHh
Q 011328           95 AWALTNIASGTSENTRVVIDH-GAVPIFVRLLSS-----------------PTDDVREQAVWALGNVAGDSPKCRDLVLS  156 (488)
Q Consensus        95 ~~~L~~l~~~~~~~~~~~~~~-g~i~~L~~~L~~-----------------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~  156 (488)
                      .+.+.-++...++.+..+++. +++..+...+..                 .+......++.++.|+..+.+.... -..
T Consensus       100 ~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~-~~~  178 (446)
T PF10165_consen  100 SRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVP-EEF  178 (446)
T ss_pred             HHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccc-hhh
Confidence            999988888788888887755 677777765532                 1345567788888898765543222 012


Q ss_pred             cCChHHHHHHhccc--------ccHhHHHHHHHHHHHhhcCC------------CCCChhhhhchHHHHHHhhc----cC
Q 011328          157 NGALMPLLAQFNEH--------AKLSMLRNATWTLSNFCRGK------------PQPLFEQTRPALPALERLIH----SN  212 (488)
Q Consensus       157 ~~~l~~L~~ll~~~--------~~~~v~~~a~~~L~~l~~~~------------~~~~~~~~~~~~~~l~~ll~----~~  212 (488)
                      ...++.++..+...        .......+++.+|.++--..            ...........+..++.+|.    ..
T Consensus       179 ~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~  258 (446)
T PF10165_consen  179 SPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLDKY  258 (446)
T ss_pred             hHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHHhc
Confidence            23344444443211        23456777888888772111            00011122345556666654    21


Q ss_pred             ----ChhHHHHHHHHHHHhccCCchhHHHHHHhC-----------------CHHHHHHhcCCCCcchHhHHHHHHhHhhc
Q 011328          213 ----DDEVLTDACWALSYLSDGTNDKIQAVIEAG-----------------VCPRLVELLRHPSPSVLIPALRTVGNIVT  271 (488)
Q Consensus       213 ----~~~v~~~al~~L~~l~~~~~~~~~~~~~~~-----------------~l~~L~~lL~~~~~~v~~~a~~~L~~l~~  271 (488)
                          -.......+.+|..++.......+ .++..                 +-..|++++.++.+.++..+...+..+|.
T Consensus       259 ~~~~l~~~l~PlL~lL~~~~~~~~~~Rk-~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~~~~~k~~vaellf~Lc~  337 (446)
T PF10165_consen  259 EALKLDELLTPLLTLLTRLARAAREVRK-YLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSPDPQLKDAVAELLFVLCK  337 (446)
T ss_pred             CcccchhhHhhHHHHHHHHHHhcHHHHH-HHHHHhCCChhhcccCCCCCcchHHHHHHHhCCCCchHHHHHHHHHHHHHh
Confidence                135677788888888876644333 33333                 34455566665556666666666666654

It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]

Probab=97.55  E-value=0.0011  Score=67.18  Aligned_cols=190  Identities=19%  Similarity=0.163  Sum_probs=133.7

Q ss_pred             CHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHH--------HHh----cCChHHHHHHhcccccHhHHHHHHHHHH
Q 011328          117 AVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDL--------VLS----NGALMPLLAQFNEHAKLSMLRNATWTLS  184 (488)
Q Consensus       117 ~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~--------~~~----~~~l~~L~~ll~~~~~~~v~~~a~~~L~  184 (488)
                      +...++.+|+.  +++-..+..++.-+..|++.+...        +.+    ..+++.+++.. ...+...+...+.+|+
T Consensus       816 ia~klld~Ls~--~~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF~~ivP~l~~~~-~t~~~~~K~~yl~~Ls  892 (1030)
T KOG1967|consen  816 IAEKLLDLLSG--PSTGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFFCDIVPILVSKF-ETAPGSQKHNYLEALS  892 (1030)
T ss_pred             HHHHHHHhcCC--ccccchHHHhhHhhhccChHHhhhccccchhHHHHHHHHHhhHHHHHHHh-ccCCccchhHHHHHHH
Confidence            34555556644  455556666676666655433211        111    23567777777 4556677888889999


Q ss_pred             HhhcCCCCCChh-hhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCC---cchHh
Q 011328          185 NFCRGKPQPLFE-QTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPS---PSVLI  260 (488)
Q Consensus       185 ~l~~~~~~~~~~-~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~---~~v~~  260 (488)
                      ++..+-|..... .....+|.+++.|.-+|..++..++.++..+....+.....-++ -+++.++.+-.+++   ..+|.
T Consensus       893 hVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~~-Tlvp~lLsls~~~~n~~~~VR~  971 (1030)
T KOG1967|consen  893 HVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHLS-TLVPYLLSLSSDNDNNMMVVRE  971 (1030)
T ss_pred             HHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHHh-HHHHHHHhcCCCCCcchhHHHH
Confidence            988866553333 34678899999999999999999999999887655444333332 46677777766554   57999


Q ss_pred             HHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHH
Q 011328          261 PALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISN  311 (488)
Q Consensus       261 ~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~n  311 (488)
                      .|+.++..+.+..|...-......++..+.+.|+++ ..-+|++|..+=.+
T Consensus       972 ~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDk-KRlVR~eAv~tR~~ 1021 (1030)
T KOG1967|consen  972 DALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDK-KRLVRKEAVDTRQN 1021 (1030)
T ss_pred             HHHHHHHHHhccCCCcccccccHHHHHHhhhccCcH-HHHHHHHHHHHhhh
Confidence            999999999997666655556678899999999999 89999999876543

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=97.55  E-value=0.014  Score=54.27  Aligned_cols=205  Identities=12%  Similarity=0.085  Sum_probs=143.5

Q ss_pred             HHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchh-----hHHHhhCCChHHHHHHhcccchhhHHHHHHHHHH
Q 011328          236 QAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQ-----TQCIINHQALPCLLDLLTQNYKKSIKKEACWTIS  310 (488)
Q Consensus       236 ~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~-----~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~  310 (488)
                      +.+...+.+..|+..|..-+-+.|..+..+.+++.+.....     ...+ ....-+.+..++..-.++++-..+...|.
T Consensus        70 ~Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl-~~~~peil~~L~~gy~~~dial~~g~mlR  148 (335)
T PF08569_consen   70 QEIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYL-ERHRPEILDILLRGYENPDIALNCGDMLR  148 (335)
T ss_dssp             HHHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHH-HT--THHHHHHHHGGGSTTTHHHHHHHHH
T ss_pred             HHHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHH-HhCCHHHHHHHHHHhcCccccchHHHHHH
Confidence            44666789999999999888889999999999998764433     2222 22223333344433335566677777788


Q ss_pred             HHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHC---CChHHHHhhcCCCCHHHH
Q 011328          311 NITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQ---GCIKPLCDLLNCPDPRIV  387 (488)
Q Consensus       311 nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~---~~i~~L~~ll~~~~~~v~  387 (488)
                      .++.. +...+.++....+..+++.++.++.++...|..++..+.... +.....+...   ..+..+..++.+++.-++
T Consensus       149 ec~k~-e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~h-k~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtk  226 (335)
T PF08569_consen  149 ECIKH-ESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRH-KKLVAEFLSNNYDRFFQKYNKLLESSNYVTK  226 (335)
T ss_dssp             HHTTS-HHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSS-HHHHHHHHHHTHHHHHHHHHHHCT-SSHHHH
T ss_pred             HHHhh-HHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHHHccCCCeEee
Confidence            77766 667778888889999999999999999999999999987654 3443333333   446778889999999999


Q ss_pred             HHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 011328          388 TVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYW  452 (488)
Q Consensus       388 ~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~~~~~v~~~a~~~l~~~~  452 (488)
                      .+++..|+.++..-.....         ....+.+..-+..+..++.+++..++-.|..+..-+.
T Consensus       227 rqslkLL~ellldr~n~~v---------m~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFV  282 (335)
T PF08569_consen  227 RQSLKLLGELLLDRSNFNV---------MTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFV  282 (335)
T ss_dssp             HHHHHHHHHHHHSGGGHHH---------HHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHchhHHHH---------HHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHH
Confidence            9999999999866554321         3455556666888888899999999888877765443

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=97.55  E-value=0.0005  Score=51.11  Aligned_cols=68  Identities=16%  Similarity=0.336  Sum_probs=59.6

Q ss_pred             HHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhC--CCCHHHHHHHHHHHhhhhCCCchhHHHHHhc
Q 011328           90 LQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLS--SPTDDVREQAVWALGNVAGDSPKCRDLVLSN  157 (488)
Q Consensus        90 v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~  157 (488)
                      .+...+++|++++..++...+.+.+.|+++.++....  ..+|-+++.|++++.+++.++++.++.+.+.
T Consensus         2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L   71 (102)
T PF09759_consen    2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQL   71 (102)
T ss_pred             cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence            3567789999999999999999999999999999654  4789999999999999999999887776553

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=97.55  E-value=0.049  Score=50.79  Aligned_cols=225  Identities=11%  Similarity=0.117  Sum_probs=155.9

Q ss_pred             hchHHHHHHhhccCChhHHHHHHHHHHHhccCCchh-----HHHHHHh--CCHHHHHHhcCCCCcchHhHHHHHHhHhhc
Q 011328          199 RPALPALERLIHSNDDEVLTDACWALSYLSDGTNDK-----IQAVIEA--GVCPRLVELLRHPSPSVLIPALRTVGNIVT  271 (488)
Q Consensus       199 ~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~-----~~~~~~~--~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~  271 (488)
                      .+.+..++..|..-+-+.+..+..+..++.....+.     .+.+.+.  +++..|+..-.  ++++...+-..|...+.
T Consensus        75 ~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~--~~dial~~g~mlRec~k  152 (335)
T PF08569_consen   75 SDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYE--NPDIALNCGDMLRECIK  152 (335)
T ss_dssp             HTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGG--STTTHHHHHHHHHHHTT
T ss_pred             hCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhc--CccccchHHHHHHHHHh
Confidence            578888888888889999999999999988654322     2223222  34444444444  55677777777777776


Q ss_pred             CCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcC---ChHHHHHHHhcCChhHHHHHH
Q 011328          272 GDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAG---IIGPLVNLLLNAEFEIKKEAA  348 (488)
Q Consensus       272 ~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~---~l~~L~~ll~~~~~~v~~~a~  348 (488)
                       .+...+.++....+..+.+.++.+ +.++...|..++..+...++.....++..+   ++.....++.+++.-.|.+++
T Consensus       153 -~e~l~~~iL~~~~f~~ff~~~~~~-~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqsl  230 (335)
T PF08569_consen  153 -HESLAKIILYSECFWKFFKYVQLP-NFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSL  230 (335)
T ss_dssp             -SHHHHHHHHTSGGGGGHHHHTTSS-SHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHH
T ss_pred             -hHHHHHHHhCcHHHHHHHHHhcCC-ccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhH
Confidence             455677788888888999999999 999999999999998876677766666543   577788889999999999999


Q ss_pred             HHHHHhccCCCH--HHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhh--c
Q 011328          349 WAISNATSGGSN--EQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDA--E  424 (488)
Q Consensus       349 ~aL~~l~~~~~~--~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~--g  424 (488)
                      ..|+.+......  -..+++.+...+..++.+|+++...++-.|...+.-++....+...         +...+..+  .
T Consensus       231 kLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K~~~---------I~~iL~~Nr~k  301 (335)
T PF08569_consen  231 KLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNKPPP---------IVDILIKNREK  301 (335)
T ss_dssp             HHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-BHH---------HHHHHHHTHHH
T ss_pred             HHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCCChH---------HHHHHHHHHHH
Confidence            999999865422  1245555667799999999999999999999888777665444332         45555433  2


Q ss_pred             cHHHHHHhhcCC
Q 011328          425 GLEKIENLQSHD  436 (488)
Q Consensus       425 ~~~~L~~l~~~~  436 (488)
                      .++.|.++..+.
T Consensus       302 Ll~fl~~f~~~~  313 (335)
T PF08569_consen  302 LLRFLKDFHTDR  313 (335)
T ss_dssp             HHHHHHTTTTT-
T ss_pred             HHHHHHhCCCCC
Confidence            345555554443

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=97.51  E-value=0.018  Score=56.88  Aligned_cols=296  Identities=12%  Similarity=0.101  Sum_probs=153.8

Q ss_pred             HHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHH
Q 011328           76 PRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVL  155 (488)
Q Consensus        76 ~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~  155 (488)
                      ..++..-+ ++ ...+.-|+..|......-|+..+..     +..++.++++++..+|..|+..|..+|.+.++....+ 
T Consensus        26 ~~il~~~k-g~-~k~K~Laaq~I~kffk~FP~l~~~A-----i~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kv-   97 (556)
T PF05918_consen   26 KEILDGVK-GS-PKEKRLAAQFIPKFFKHFPDLQEEA-----INAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKV-   97 (556)
T ss_dssp             HHHHHGGG-S--HHHHHHHHHHHHHHHCC-GGGHHHH-----HHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHH-
T ss_pred             HHHHHHcc-CC-HHHHHHHHHHHHHHHhhChhhHHHH-----HHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHH-
Confidence            34444444 34 7899999999999999888877754     7899999999999999999999999999877654443 


Q ss_pred             hcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhc---cCChhHHHHHHHHHHHhc-cCC
Q 011328          156 SNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH---SNDDEVLTDACWALSYLS-DGT  231 (488)
Q Consensus       156 ~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~---~~~~~v~~~al~~L~~l~-~~~  231 (488)
                          ...|+++| ..+++.-...+-.+|..+...++       .+.+..+...+.   +.++.+++.++..|..-. .-.
T Consensus        98 ----aDvL~QlL-~tdd~~E~~~v~~sL~~ll~~d~-------k~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~  165 (556)
T PF05918_consen   98 ----ADVLVQLL-QTDDPVELDAVKNSLMSLLKQDP-------KGTLTGLFSQIESSKSGDEQVRERALKFLREKLKPLK  165 (556)
T ss_dssp             ----HHHHHHHT-T---HHHHHHHHHHHHHHHHH-H-------HHHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-
T ss_pred             ----HHHHHHHH-hcccHHHHHHHHHHHHHHHhcCc-------HHHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCc
Confidence                45788888 66666666666677776665431       344455555554   578889999998885432 222


Q ss_pred             chhHH--HHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcC----CchhhHHHhhCCChHHHHHHh------cccchh
Q 011328          232 NDKIQ--AVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTG----DDMQTQCIINHQALPCLLDLL------TQNYKK  299 (488)
Q Consensus       232 ~~~~~--~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~----~~~~~~~~~~~~~~~~L~~lL------~~~~~~  299 (488)
                      .+...  .-.+.-++..+.+.|.+-..+--...+.+|..+-..    .....+.     +++.+.+..      ... ++
T Consensus       166 ~~~~~p~~E~e~~i~~~ikkvL~DVTaeEF~l~m~lL~~lk~~~~~~t~~g~qe-----Lv~ii~eQa~Ld~~f~~s-D~  239 (556)
T PF05918_consen  166 PELLTPQKEMEEFIVDEIKKVLQDVTAEEFELFMSLLKSLKIYGGKQTIEGRQE-----LVDIIEEQADLDQPFDPS-DP  239 (556)
T ss_dssp             TTTS---HHHHHHHHHHHHHHCTT--HHHHHHHHHHHHTSGG---GSSHHHHHH-----HHHHHHHHHTTTS---SS-SH
T ss_pred             HHHhhchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhCccccccCChHHHHH-----HHHHHHHHhccCCCCCCc-CH
Confidence            11111  112223445566677664433344455566665541    1222222     233333222      112 23


Q ss_pred             hHHHHHHHHHHH----Hhc--CCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChH
Q 011328          300 SIKKEACWTISN----ITA--GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIK  373 (488)
Q Consensus       300 ~v~~~a~~~L~n----l~~--~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~  373 (488)
                      +.-.....++..    ++.  .+......+.+ .++|.+-.+    ..+.+...+.+++.++..........+++ .+..
T Consensus       240 e~Idrli~C~~~Alp~fs~~v~Sskfv~y~~~-kvlP~l~~l----~e~~kl~lLk~lAE~s~~~~~~d~~~~L~-~i~~  313 (556)
T PF05918_consen  240 ESIDRLISCLRQALPFFSRGVSSSKFVNYMCE-KVLPKLSDL----PEDRKLDLLKLLAELSPFCGAQDARQLLP-SIFQ  313 (556)
T ss_dssp             HHHHHHHHHHHHHGGG-BTTB--HHHHHHHHH-HTCCCTT---------HHHHHHHHHHHHHTT----THHHHHH-HHHH
T ss_pred             HHHHHHHHHHHHhhHHhcCCCChHHHHHHHHH-HhcCChhhC----ChHHHHHHHHHHHHHcCCCCcccHHHHHH-HHHH
Confidence            333233333222    122  23344444444 477765554    45677788899998887764333333321 2333


Q ss_pred             HHHhhcCCC--CH----HHHHHHHHHHHHHHHhhhh
Q 011328          374 PLCDLLNCP--DP----RIVTVCLEGLENILKAGEA  403 (488)
Q Consensus       374 ~L~~ll~~~--~~----~v~~~al~~L~~l~~~~~~  403 (488)
                      .|...+-..  .+    ..++..+.+++++....+.
T Consensus       314 ~L~~ymP~~~~~~~l~fs~vEcLL~afh~La~k~p~  349 (556)
T PF05918_consen  314 LLKKYMPSKKTEPKLQFSYVECLLYAFHQLARKSPN  349 (556)
T ss_dssp             HHHTTS----------HHHHHHHHHHHHHHHTT-TH
T ss_pred             HHHHhCCCCCCCCcccchHhhHHHHHHHHHhhhCcc
Confidence            343333322  22    3456777777777765443

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=97.51  E-value=0.0025  Score=47.47  Aligned_cols=93  Identities=17%  Similarity=0.258  Sum_probs=68.8

Q ss_pred             HHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhh
Q 011328          344 KKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDA  423 (488)
Q Consensus       344 ~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~  423 (488)
                      |..++.+|..++..-......++-  .++++++.++.++++.+|..|+++|.++.+.....           +...|.  
T Consensus         3 R~ggli~Laa~ai~l~~~~~~~l~--~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~-----------~l~~f~--   67 (97)
T PF12755_consen    3 RKGGLIGLAAVAIALGKDISKYLD--EILPPVLKCFDDQDSRVRYYACEALYNISKVARGE-----------ILPYFN--   67 (97)
T ss_pred             hhHHHHHHHHHHHHchHhHHHHHH--HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHH-----------HHHHHH--
Confidence            566777887776655444444443  48999999999999999999999999998776532           233333  


Q ss_pred             ccHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 011328          424 EGLEKIENLQSHDNTEIYEKAVKILETYW  452 (488)
Q Consensus       424 g~~~~L~~l~~~~~~~v~~~a~~~l~~~~  452 (488)
                      ..++.|-++..++++.|+..| .+|.++.
T Consensus        68 ~IF~~L~kl~~D~d~~Vr~~a-~~Ld~ll   95 (97)
T PF12755_consen   68 EIFDALCKLSADPDENVRSAA-ELLDRLL   95 (97)
T ss_pred             HHHHHHHHHHcCCchhHHHHH-HHHHHHh
Confidence            347889999999999998776 5666554

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=97.51  E-value=0.0002  Score=47.37  Aligned_cols=55  Identities=31%  Similarity=0.511  Sum_probs=47.1

Q ss_pred             hhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHh
Q 011328          214 DEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNI  269 (488)
Q Consensus       214 ~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l  269 (488)
                      +.++..++++|++++...++..+... ..+++.|..+|.++++.||..|+++|++|
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~~~-~~~~~~L~~~L~d~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQPYL-PELLPALIPLLQDDDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHHHH-HHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence            46899999999999888776666543 48899999999999999999999999875

...

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]

Probab=97.45  E-value=0.18  Score=51.74  Aligned_cols=227  Identities=14%  Similarity=0.152  Sum_probs=153.3

Q ss_pred             CCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHH
Q 011328          126 SSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPAL  205 (488)
Q Consensus       126 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l  205 (488)
                      .+..|.+...+.+++...+...........  ..+...+..+..+..+.++..|+.+++..|.  .........+++..+
T Consensus       460 ~~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~--~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~--~~vl~~~~p~ild~L  535 (1005)
T KOG2274|consen  460 YQESPFLLLRAFLTISKFSSSTVINPQLLQ--HFLNATVNALTMDVPPPVKISAVRAFCGYCK--VKVLLSLQPMILDGL  535 (1005)
T ss_pred             cccCHHHHHHHHHHHHHHHhhhccchhHHH--HHHHHHHHhhccCCCCchhHHHHHHHHhccC--ceeccccchHHHHHH
Confidence            446777777888888877654322211111  2344556666566777888899999888883  233444557788888


Q ss_pred             HHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcC--CCCcchHhHHHHHHhHhhcCCchhhHHHhhC
Q 011328          206 ERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR--HPSPSVLIPALRTVGNIVTGDDMQTQCIINH  283 (488)
Q Consensus       206 ~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~  283 (488)
                      .++......++......+|+.++..+++. ..-.+..+.|.++.+..  +++|.+...+-.++-.++.. ..+... ...
T Consensus       536 ~qlas~~s~evl~llmE~Ls~vv~~dpef-~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~-~~~~g~-m~e  612 (1005)
T KOG2274|consen  536 LQLASKSSDEVLVLLMEALSSVVKLDPEF-AASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQI-AANYGP-MQE  612 (1005)
T ss_pred             HHHcccccHHHHHHHHHHHHHHhccChhh-hhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHH-HHhhcc-hHH
Confidence            88888888999999999999999888765 34556677787777753  36777777777776666651 112111 233


Q ss_pred             CChHHHHHHhcccch----hhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHH-hcCChhHHHHHHHHHHHhccCC
Q 011328          284 QALPCLLDLLTQNYK----KSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLL-LNAEFEIKKEAAWAISNATSGG  358 (488)
Q Consensus       284 ~~~~~L~~lL~~~~~----~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll-~~~~~~v~~~a~~aL~~l~~~~  358 (488)
                      ..+|.++++|+.+ .    ......++..|..+.++.+.-....+-..++|++.++. +++|...-+.+..||..+....
T Consensus       613 ~~iPslisil~~~-~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~  691 (1005)
T KOG2274|consen  613 RLIPSLISVLQLN-ADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISVT  691 (1005)
T ss_pred             HHHHHHHHHHcCc-ccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcC
Confidence            5789999999877 4    55667777888877774332233333334788888866 4457888899999999998875


Q ss_pred             CH
Q 011328          359 SN  360 (488)
Q Consensus       359 ~~  360 (488)
                      .+
T Consensus       692 ~e  693 (1005)
T KOG2274|consen  692 LE  693 (1005)
T ss_pred             HH
Confidence            33

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]

Probab=97.44  E-value=0.025  Score=56.36  Aligned_cols=162  Identities=19%  Similarity=0.230  Sum_probs=106.1

Q ss_pred             HHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHH
Q 011328          245 PRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAII  324 (488)
Q Consensus       245 ~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~  324 (488)
                      +.+-+++.+.+|-+|...+.+++.--.++.       ..+++..|+..--+..+.+||+.|+.+|+-++..+++      
T Consensus       522 ~lI~el~~dkdpilR~~Gm~t~alAy~GTg-------nnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~------  588 (929)
T KOG2062|consen  522 PLIKELLRDKDPILRYGGMYTLALAYVGTG-------NNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPE------  588 (929)
T ss_pred             HHHHHHhcCCchhhhhhhHHHHHHHHhccC-------chhhHHHhhcccccccchHHHHHHHHHheeeEecChh------
Confidence            445566677788888877776654333322       2356677777744444999999999999999988777      


Q ss_pred             HcCChHHHHHHHhcC-ChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhh
Q 011328          325 EAGIIGPLVNLLLNA-EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEA  403 (488)
Q Consensus       325 ~~~~l~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~  403 (488)
                         ..+..+++|..+ ++.||--++.+|+-.+.+.....        ++..|..+.+++..-||+.|+-++.-++.....
T Consensus       589 ---~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~e--------Ai~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~  657 (929)
T KOG2062|consen  589 ---QLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKE--------AINLLEPLTSDPVDFVRQGALIALAMIMIQQTE  657 (929)
T ss_pred             ---hchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHH--------HHHHHhhhhcChHHHHHHHHHHHHHHHHHhccc
Confidence               455666777665 89999999999998876543322        344555666677778899999888777543221


Q ss_pred             hhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHH
Q 011328          404 EKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEK  443 (488)
Q Consensus       404 ~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~~~~~v~~~  443 (488)
                      .        .++-...|     .+.+.+...+.+++.-.+
T Consensus       658 ~--------~~pkv~~f-----rk~l~kvI~dKhEd~~aK  684 (929)
T KOG2062|consen  658 Q--------LCPKVNGF-----RKQLEKVINDKHEDGMAK  684 (929)
T ss_pred             c--------cCchHHHH-----HHHHHHHhhhhhhHHHHH
Confidence            1        11112223     345667777766665433

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]

Probab=97.42  E-value=0.019  Score=50.07  Aligned_cols=256  Identities=18%  Similarity=0.227  Sum_probs=157.9

Q ss_pred             HHHHHHhhcCCC-ChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHH
Q 011328           75 VPRFIEFLSRDD-FPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDL  153 (488)
Q Consensus        75 i~~L~~lL~~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~  153 (488)
                      +..+.+.|.+.+ ...-+..|+..|.++...           +.+..+.+...+++...+...+.+|+.....       
T Consensus         5 i~~i~~~L~~~s~~l~~r~rALf~Lr~l~~~-----------~~i~~i~ka~~d~s~llkhe~ay~LgQ~~~~-------   66 (289)
T KOG0567|consen    5 IETIGNILVNKSQPLQNRFRALFNLRNLLGP-----------AAIKAITKAFIDDSALLKHELAYVLGQMQDE-------   66 (289)
T ss_pred             HHHHHHHHcCccHHHHHHHHHHHhhhccCCh-----------HHHHHHHHhcccchhhhccchhhhhhhhccc-------
Confidence            344445554432 123455666666666551           2266666666666677777777777776422       


Q ss_pred             HHhcCChHHHHHHhcc-cccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCc
Q 011328          154 VLSNGALMPLLAQFNE-HAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTN  232 (488)
Q Consensus       154 ~~~~~~l~~L~~ll~~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~  232 (488)
                          ..++.++..+.. +..+-++..|..+|..+...          ..++.+-++.+++-..|++.+..++..+-..+.
T Consensus        67 ----~Av~~l~~vl~desq~pmvRhEAaealga~~~~----------~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~  132 (289)
T KOG0567|consen   67 ----DAVPVLVEVLLDESQEPMVRHEAAEALGAIGDP----------ESLEILTKYIKDPCKEVRETCELAIKRLEWKDI  132 (289)
T ss_pred             ----hhhHHHHHHhcccccchHHHHHHHHHHHhhcch----------hhHHHHHHHhcCCccccchHHHHHHHHHHHhhc
Confidence                356777777743 34566788899999887732          466777777777777888877777766643211


Q ss_pred             hhH----HHH--------HHhCCHHHHHHhcCC-CCc-chHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccch
Q 011328          233 DKI----QAV--------IEAGVCPRLVELLRH-PSP-SVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYK  298 (488)
Q Consensus       233 ~~~----~~~--------~~~~~l~~L~~lL~~-~~~-~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~  298 (488)
                      ...    ...        ...+-+..+-..+.+ ..+ --|..|++.|.|+-.  +         ..+..+.+-+..+ +
T Consensus       133 ~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~--E---------eaI~al~~~l~~~-S  200 (289)
T KOG0567|consen  133 IDKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIGT--E---------EAINALIDGLADD-S  200 (289)
T ss_pred             cccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccCc--H---------HHHHHHHHhcccc-h
Confidence            000    000        000112222222222 111 123355555555422  1         2345567777777 8


Q ss_pred             hhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC--ChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHH
Q 011328          299 KSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA--EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLC  376 (488)
Q Consensus       299 ~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~  376 (488)
                      .-.|.+++++++.+-+.  .         .++.|.+.|...  ++-||..|+.||+.++.   ++         +++.|.
T Consensus       201 alfrhEvAfVfGQl~s~--~---------ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~---e~---------~~~vL~  257 (289)
T KOG0567|consen  201 ALFRHEVAFVFGQLQSP--A---------AIPSLIKVLLDETEHPMVRHEAAEALGAIAD---ED---------CVEVLK  257 (289)
T ss_pred             HHHHHHHHHHHhhccch--h---------hhHHHHHHHHhhhcchHHHHHHHHHHHhhcC---HH---------HHHHHH
Confidence            88999999999998543  2         567777777654  78899999999999974   22         467778


Q ss_pred             hhcCCCCHHHHHHHHHHHHHH
Q 011328          377 DLLNCPDPRIVTVCLEGLENI  397 (488)
Q Consensus       377 ~ll~~~~~~v~~~al~~L~~l  397 (488)
                      +.++++++-+++.|..+|..+
T Consensus       258 e~~~D~~~vv~esc~valdm~  278 (289)
T KOG0567|consen  258 EYLGDEERVVRESCEVALDML  278 (289)
T ss_pred             HHcCCcHHHHHHHHHHHHHHH
Confidence            889988888888888777644

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=97.41  E-value=0.0066  Score=51.47  Aligned_cols=93  Identities=24%  Similarity=0.258  Sum_probs=75.6

Q ss_pred             ChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHH
Q 011328          213 DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDL  292 (488)
Q Consensus       213 ~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~l  292 (488)
                      ++.++..++.+++.++...+...+     ..++.+...|.++++.+|..|+.+|..|.....-..    +..++..++..
T Consensus         1 ~~~vR~n~i~~l~DL~~r~~~~ve-----~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~----k~~l~~~~l~~   71 (178)
T PF12717_consen    1 DPSVRNNAIIALGDLCIRYPNLVE-----PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKV----KGQLFSRILKL   71 (178)
T ss_pred             CHHHHHHHHHHHHHHHHhCcHHHH-----hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceee----hhhhhHHHHHH
Confidence            578899999999999977665444     667899999999999999999999999987433221    23344778888


Q ss_pred             hcccchhhHHHHHHHHHHHHhcC
Q 011328          293 LTQNYKKSIKKEACWTISNITAG  315 (488)
Q Consensus       293 L~~~~~~~v~~~a~~~L~nl~~~  315 (488)
                      +.++ ++++|..|..++..+...
T Consensus        72 l~D~-~~~Ir~~A~~~~~e~~~~   93 (178)
T PF12717_consen   72 LVDE-NPEIRSLARSFFSELLKK   93 (178)
T ss_pred             HcCC-CHHHHHHHHHHHHHHHHh
Confidence            8888 999999999999999875

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=97.40  E-value=0.0083  Score=55.59  Aligned_cols=200  Identities=16%  Similarity=0.209  Sum_probs=125.8

Q ss_pred             HHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHh--hCCChHHHHHHhcccchhhHHHHHHHHHHHHhc--CCHHHH
Q 011328          245 PRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCII--NHQALPCLLDLLTQNYKKSIKKEACWTISNITA--GNVNQI  320 (488)
Q Consensus       245 ~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~--~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~--~~~~~~  320 (488)
                      ...+..+.+.+...|..++..+..+...... ...+.  ...++..+.+.++.+ ..+-+..|+.+++-++.  +.....
T Consensus        46 ~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~-~d~v~~~~~tL~~~~~k~lkkg-~~~E~~lA~~~l~Ll~ltlg~g~~~  123 (309)
T PF05004_consen   46 KEAIDLLTEKSSSTREAALEALIRALSSRYL-PDFVEDRRETLLDALLKSLKKG-KSEEQALAARALALLALTLGAGEDS  123 (309)
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHHhhhcCCCccH
Confidence            3444555666688999999998888764321 12221  224677788888777 44555667676666654  223334


Q ss_pred             HHHHHcCChHHHHHHHhcCC--hhHHHHHHHHHHHhccC--CCHHHHHHHHHCCChHHH--HhhcC----------CCCH
Q 011328          321 QAIIEAGIIGPLVNLLLNAE--FEIKKEAAWAISNATSG--GSNEQIKFLVSQGCIKPL--CDLLN----------CPDP  384 (488)
Q Consensus       321 ~~l~~~~~l~~L~~ll~~~~--~~v~~~a~~aL~~l~~~--~~~~~~~~l~~~~~i~~L--~~ll~----------~~~~  384 (488)
                      ..+++ .+.|.|.+.+.++.  ..+|..++.+|+-++..  .+.+......+  .++.+  ....+          .+++
T Consensus       124 ~ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~--~le~if~~~~~~~~~~~~~~~~~~~~  200 (309)
T PF05004_consen  124 EEIFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME--SLESIFLLSILKSDGNAPVVAAEDDA  200 (309)
T ss_pred             HHHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH--HHHHHHHHHhcCcCCCcccccCCCcc
Confidence            45555 37888888888763  45666777777666543  23333331111  23311  11222          1235


Q ss_pred             HHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCCCCC
Q 011328          385 RIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVEEDEDEPL  461 (488)
Q Consensus       385 ~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~~~~~~~  461 (488)
                      .+...|+.+..-++...+...          +...+.+  .++.|..++.+++.+||..|...|.-+|+.-.+.+++
T Consensus       201 ~l~~aAL~aW~lLlt~~~~~~----------~~~~~~~--~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~~~~~~  265 (309)
T PF05004_consen  201 ALVAAALSAWALLLTTLPDSK----------LEDLLEE--ALPALSELLDSDDVDVRIAAGEAIALLYELARDHEED  265 (309)
T ss_pred             HHHHHHHHHHHHHHhcCCHHH----------HHHHHHH--HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhccccc
Confidence            788999999988887665422          2333333  3889999999999999999999999999887765555

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>PF11841 DUF3361: Domain of unknown function (DUF3361)

Probab=97.39  E-value=0.0061  Score=49.32  Aligned_cols=127  Identities=13%  Similarity=0.101  Sum_probs=102.8

Q ss_pred             hHHHHHhcCChHHHHHHhccccc-----HhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccC--ChhHHHHHHH
Q 011328          150 CRDLVLSNGALMPLLAQFNEHAK-----LSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSN--DDEVLTDACW  222 (488)
Q Consensus       150 ~~~~~~~~~~l~~L~~ll~~~~~-----~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~--~~~v~~~al~  222 (488)
                      +...+++.+++..|++++..+..     .++...++.++..|-......+......++..++.++...  |..+...++.
T Consensus         3 FA~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLa   82 (160)
T PF11841_consen    3 FAQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLA   82 (160)
T ss_pred             hHHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHH
Confidence            34567788999999999965443     4778889999999988775666667778888898888754  6899999999


Q ss_pred             HHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchh
Q 011328          223 ALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQ  276 (488)
Q Consensus       223 ~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~  276 (488)
                      .|-+++.+++.....+.+.=-++.|+.+|+..+++++..++..+..+....++.
T Consensus        83 ILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~  136 (160)
T PF11841_consen   83 ILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDS  136 (160)
T ss_pred             HHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChH
Confidence            999999988876676666566899999999999999999998888877655543

>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=97.36  E-value=0.016  Score=55.94  Aligned_cols=230  Identities=16%  Similarity=0.193  Sum_probs=134.5

Q ss_pred             hHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhc
Q 011328           89 QLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN  168 (488)
Q Consensus        89 ~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~  168 (488)
                      .++..++..++-+..++ .++      .+.+.+-.++..++.-.-+.|...++-+.-+.... +      .+..+...-.
T Consensus       426 ~l~yG~~LGiGL~~MgS-an~------eiye~lKe~l~nD~a~~geAa~~gMGl~mLgt~s~-e------ai~dm~tya~  491 (926)
T COG5116         426 ELAYGVCLGIGLINMGS-ANR------EIYEKLKELLKNDRALLGEAAVYGMGLLMLGTWSV-E------AIEDMRTYAG  491 (926)
T ss_pred             HHHHHHHhhhcchhccc-ccH------HHHHHHHHHHhcchhhhhhhhhhccceeeecCCCH-H------HHHHHHHHhc
Confidence            55666655555444421 222      23466666777666666666666555544332210 1      2233333332


Q ss_pred             ccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHH
Q 011328          169 EHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLV  248 (488)
Q Consensus       169 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~  248 (488)
                      ......+.+...-.+.-+....       ...+-..+.+++.+.++-++.....++..--.....       .+++..++
T Consensus       492 ETqhe~i~Rglgig~aLi~ygr-------qe~add~I~ell~d~ds~lRy~G~fs~alAy~GTgn-------~~vv~~lL  557 (926)
T COG5116         492 ETQHERIKRGLGIGFALILYGR-------QEMADDYINELLYDKDSILRYNGVFSLALAYVGTGN-------LGVVSTLL  557 (926)
T ss_pred             chhhhhHHhhhhhhhhHhhhhh-------HHHHHHHHHHHhcCchHHhhhccHHHHHHHHhcCCc-------chhHhhhh
Confidence            2233334332222222211111       112233566777777777777766555432222111       25667777


Q ss_pred             Hh-cCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcC
Q 011328          249 EL-LRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAG  327 (488)
Q Consensus       249 ~l-L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~  327 (488)
                      .. ..+.+.++|++|.-+|+-+|...+         ..+...+++|..++++.||...+.+|+-.+.+.....       
T Consensus       558 h~avsD~nDDVrRAAViAlGfvc~~D~---------~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~-------  621 (926)
T COG5116         558 HYAVSDGNDDVRRAAVIALGFVCCDDR---------DLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDKV-------  621 (926)
T ss_pred             eeecccCchHHHHHHHHheeeeEecCc---------chhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHH-------
Confidence            77 567888999999999999887544         4556677888777799999999999998887533221       


Q ss_pred             ChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHH
Q 011328          328 IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQ  362 (488)
Q Consensus       328 ~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~  362 (488)
                      .+..|-.++.+...-||+.|+-+++-+...++++.
T Consensus       622 a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~L  656 (926)
T COG5116         622 ATDILEALMYDTNDFVRQSAMIAVGMILMQCNPEL  656 (926)
T ss_pred             HHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCccc
Confidence            34455566777778899999999988876665443

>PF11841 DUF3361: Domain of unknown function (DUF3361)

Probab=97.32  E-value=0.01  Score=48.02  Aligned_cols=130  Identities=13%  Similarity=0.107  Sum_probs=101.5

Q ss_pred             HHHHHhCCHHHHHHhcCCCC------cchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccc-hhhHHHHHHHH
Q 011328          236 QAVIEAGVCPRLVELLRHPS------PSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNY-KKSIKKEACWT  308 (488)
Q Consensus       236 ~~~~~~~~l~~L~~lL~~~~------~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~-~~~v~~~a~~~  308 (488)
                      ..+++.+++..|++++.++.      .++...++.++..+..+.. ..-..+...++..+........ +..+...++..
T Consensus         5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~-vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaI   83 (160)
T PF11841_consen    5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGI-VSWDTLSDSFIKKIASYVNSSAMDASILQRSLAI   83 (160)
T ss_pred             HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCc-CchhhccHHHHHHHHHHHccccccchHHHHHHHH
Confidence            45778899999999998755      2566678888888887643 2234556677888888887653 67899999999


Q ss_pred             HHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHH
Q 011328          309 ISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFL  366 (488)
Q Consensus       309 L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l  366 (488)
                      |-+++..++.....+.+.=-++.|+..|+..+.+++.+|...+..+...++++.++.+
T Consensus        84 LEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~~r~~i  141 (160)
T PF11841_consen   84 LESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDSKRKEI  141 (160)
T ss_pred             HHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChHHHHHH
Confidence            9999998777676666666699999999999999999999999999887766555543

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=97.32  E-value=0.028  Score=52.10  Aligned_cols=197  Identities=13%  Similarity=0.114  Sum_probs=125.2

Q ss_pred             HHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHH--HhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcC--Cchhh
Q 011328          202 LPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVI--EAGVCPRLVELLRHPSPSVLIPALRTVGNIVTG--DDMQT  277 (488)
Q Consensus       202 ~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~--~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~--~~~~~  277 (488)
                      +...+..+.......|+.++..+..+.....- .+.+.  ...++..+.+.++.+..+-+..|+.+++-++-.  .....
T Consensus        45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~-~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~  123 (309)
T PF05004_consen   45 LKEAIDLLTEKSSSTREAALEALIRALSSRYL-PDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDS  123 (309)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccH
Confidence            33445555666788999999999988754321 12222  124677888888887766677788877777654  22344


Q ss_pred             HHHhhCCChHHHHHHhcccc-hhhHHHHHHHHHHHHhc---CCHHHHHHHHHcCChHHHHH--HHhc----------CCh
Q 011328          278 QCIINHQALPCLLDLLTQNY-KKSIKKEACWTISNITA---GNVNQIQAIIEAGIIGPLVN--LLLN----------AEF  341 (488)
Q Consensus       278 ~~~~~~~~~~~L~~lL~~~~-~~~v~~~a~~~L~nl~~---~~~~~~~~l~~~~~l~~L~~--ll~~----------~~~  341 (488)
                      ..+++ .+.+.|.+++.+.. ...+|..++.+|+-++.   ...+......+  .+..+..  ..+.          +++
T Consensus       124 ~ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~--~le~if~~~~~~~~~~~~~~~~~~~~  200 (309)
T PF05004_consen  124 EEIFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME--SLESIFLLSILKSDGNAPVVAAEDDA  200 (309)
T ss_pred             HHHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH--HHHHHHHHHhcCcCCCcccccCCCcc
Confidence            45554 57788888887652 34566666666665543   33444432222  2332211  1221          134


Q ss_pred             hHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhh
Q 011328          342 EIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEA  403 (488)
Q Consensus       342 ~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~  403 (488)
                      .+...|+.+.+-++...+........+ ..++.|..+|++++.+||..|-++|.-+++....
T Consensus       201 ~l~~aAL~aW~lLlt~~~~~~~~~~~~-~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~~  261 (309)
T PF05004_consen  201 ALVAAALSAWALLLTTLPDSKLEDLLE-EALPALSELLDSDDVDVRIAAGEAIALLYELARD  261 (309)
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhc
Confidence            688888888888876555433333333 4689999999999999999999999988877663

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=97.32  E-value=0.00069  Score=41.51  Aligned_cols=39  Identities=38%  Similarity=0.753  Sum_probs=35.8

Q ss_pred             chhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhh
Q 011328          106 SENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVA  144 (488)
Q Consensus       106 ~~~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~  144 (488)
                      ++.+..+.+.|+++.|++++.+++++++..++++|.|++
T Consensus         2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~   40 (41)
T smart00185        2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS   40 (41)
T ss_pred             cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence            347788889999999999999999999999999999986

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=97.30  E-value=0.0087  Score=50.75  Aligned_cols=92  Identities=14%  Similarity=0.127  Sum_probs=72.4

Q ss_pred             hhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHh
Q 011328           88 PQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQF  167 (488)
Q Consensus        88 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll  167 (488)
                      +.+|..++.+++-++...+...+     ..++.+...|+++++.+|..|+.+|..|...+.-    -.+...+..++..+
T Consensus         2 ~~vR~n~i~~l~DL~~r~~~~ve-----~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~i----k~k~~l~~~~l~~l   72 (178)
T PF12717_consen    2 PSVRNNAIIALGDLCIRYPNLVE-----PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMI----KVKGQLFSRILKLL   72 (178)
T ss_pred             HHHHHHHHHHHHHHHHhCcHHHH-----hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCce----eehhhhhHHHHHHH
Confidence            78999999999999985554443     3478999999999999999999999999754321    01112336777777


Q ss_pred             cccccHhHHHHHHHHHHHhhcC
Q 011328          168 NEHAKLSMLRNATWTLSNFCRG  189 (488)
Q Consensus       168 ~~~~~~~v~~~a~~~L~~l~~~  189 (488)
                       .+++++++..|..++..+...
T Consensus        73 -~D~~~~Ir~~A~~~~~e~~~~   93 (178)
T PF12717_consen   73 -VDENPEIRSLARSFFSELLKK   93 (178)
T ss_pred             -cCCCHHHHHHHHHHHHHHHHh
Confidence             888999999999999999876

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=97.27  E-value=0.00088  Score=41.01  Aligned_cols=39  Identities=46%  Similarity=0.640  Sum_probs=35.3

Q ss_pred             HHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhc
Q 011328          317 VNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNAT  355 (488)
Q Consensus       317 ~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~  355 (488)
                      ++....+.+.|+++.|+.++.+++++++..++++|.|++
T Consensus         2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~   40 (41)
T smart00185        2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS   40 (41)
T ss_pred             cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence            346777889999999999999989999999999999986

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]

Probab=97.25  E-value=0.11  Score=45.61  Aligned_cols=224  Identities=16%  Similarity=0.178  Sum_probs=140.4

Q ss_pred             hHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccC--ChhHHHHHHHHHHHhccCCchhHHH
Q 011328          160 LMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSN--DDEVLTDACWALSYLSDGTNDKIQA  237 (488)
Q Consensus       160 l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~--~~~v~~~al~~L~~l~~~~~~~~~~  237 (488)
                      +..+.+.. .+.+.-.+...+++|......          ..+|.++..+...  .+-|+..|..+|+.+. ..      
T Consensus        38 i~~i~ka~-~d~s~llkhe~ay~LgQ~~~~----------~Av~~l~~vl~desq~pmvRhEAaealga~~-~~------   99 (289)
T KOG0567|consen   38 IKAITKAF-IDDSALLKHELAYVLGQMQDE----------DAVPVLVEVLLDESQEPMVRHEAAEALGAIG-DP------   99 (289)
T ss_pred             HHHHHHhc-ccchhhhccchhhhhhhhccc----------hhhHHHHHHhcccccchHHHHHHHHHHHhhc-ch------
Confidence            44444444 333445556677777765543          5788899888754  6788899999999876 21      


Q ss_pred             HHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhh-------HH-----HhhCCChHHHHHHh-cccchhhHHHH
Q 011328          238 VIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQT-------QC-----IINHQALPCLLDLL-TQNYKKSIKKE  304 (488)
Q Consensus       238 ~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~-------~~-----~~~~~~~~~L~~lL-~~~~~~~v~~~  304 (488)
                          +.++.+-+..+++...+++.+..++..+-....-..       ..     -...+-+..+-..| +.....--|..
T Consensus       100 ----~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~  175 (289)
T KOG0567|consen  100 ----ESLEILTKYIKDPCKEVRETCELAIKRLEWKDIIDKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYR  175 (289)
T ss_pred             ----hhHHHHHHHhcCCccccchHHHHHHHHHHHhhccccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHh
Confidence                344566666667777888877777766643211000       00     00112233444433 33312334567


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcC--CC
Q 011328          305 ACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLN--CP  382 (488)
Q Consensus       305 a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~--~~  382 (488)
                      |.+.|.|+.  ..+.         +..+..-+..++.-.|.+++.+++.+-+..            .++.|.+.|.  ..
T Consensus       176 amF~LRn~g--~Eea---------I~al~~~l~~~SalfrhEvAfVfGQl~s~~------------ai~~L~k~L~d~~E  232 (289)
T KOG0567|consen  176 AMFYLRNIG--TEEA---------INALIDGLADDSALFRHEVAFVFGQLQSPA------------AIPSLIKVLLDETE  232 (289)
T ss_pred             hhhHhhccC--cHHH---------HHHHHHhcccchHHHHHHHHHHHhhccchh------------hhHHHHHHHHhhhc
Confidence            778887773  3443         444555566667788999999999996532            3455555554  35


Q ss_pred             CHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 011328          383 DPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETY  451 (488)
Q Consensus       383 ~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~~~~~v~~~a~~~l~~~  451 (488)
                      ++.+|..|+++|+.+..-.                       .++.|+++.+++.+-|++-+...++-+
T Consensus       233 ~pMVRhEaAeALGaIa~e~-----------------------~~~vL~e~~~D~~~vv~esc~valdm~  278 (289)
T KOG0567|consen  233 HPMVRHEAAEALGAIADED-----------------------CVEVLKEYLGDEERVVRESCEVALDML  278 (289)
T ss_pred             chHHHHHHHHHHHhhcCHH-----------------------HHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence            6789999999998764221                       256788899999888998888888754

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.20  E-value=0.0069  Score=61.17  Aligned_cols=227  Identities=13%  Similarity=0.103  Sum_probs=146.6

Q ss_pred             HHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHH
Q 011328           75 VPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLV  154 (488)
Q Consensus        75 i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~  154 (488)
                      ....+..++++. +.+|..++..+..+.+.. +....+...+++...+..|++.++-+--+|...+..+|...++     
T Consensus       729 ~qeai~sl~d~q-vpik~~gL~~l~~l~e~r-~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e-----  801 (982)
T KOG4653|consen  729 LQEAISSLHDDQ-VPIKGYGLQMLRHLIEKR-KKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPE-----  801 (982)
T ss_pred             HHHHHHHhcCCc-ccchHHHHHHHHHHHHhc-chhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcch-----
Confidence            334445566666 789999999999999833 5666677789999999999999999999999999898865443     


Q ss_pred             HhcCChHHHHHHhccc---ccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCC
Q 011328          155 LSNGALMPLLAQFNEH---AKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGT  231 (488)
Q Consensus       155 ~~~~~l~~L~~ll~~~---~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~  231 (488)
                         ..++.+...-...   ..++.+-.+-.++.++...............+...+..+++++...|..++..+++++...
T Consensus       802 ---~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~  878 (982)
T KOG4653|consen  802 ---DILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLL  878 (982)
T ss_pred             ---hhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHH
Confidence               2455555532111   1123444455777776665444444445567777778888888888999999999998543


Q ss_pred             chhHHHHHHhCCHHHHHHhcC-CCCcchHhHHHHHHhHhhcCCchhhHHHhh---CCChHHHHHHhcccchhhHHHHHHH
Q 011328          232 NDKIQAVIEAGVCPRLVELLR-HPSPSVLIPALRTVGNIVTGDDMQTQCIIN---HQALPCLLDLLTQNYKKSIKKEACW  307 (488)
Q Consensus       232 ~~~~~~~~~~~~l~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~---~~~~~~L~~lL~~~~~~~v~~~a~~  307 (488)
                      .-.....+ .+++..++.+.+ ++++.+|++|+..+..+..+.....-.+..   .+....+........+..+|..++.
T Consensus       879 a~~vsd~~-~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql  957 (982)
T KOG4653|consen  879 AFQVSDFF-HEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQL  957 (982)
T ss_pred             hhhhhHHH-HHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHH
Confidence            32211111 134455555554 456789999999999998866543333221   1223333444433335556666665


Q ss_pred             HHHHH
Q 011328          308 TISNI  312 (488)
Q Consensus       308 ~L~nl  312 (488)
                      ++-.+
T Consensus       958 ~leei  962 (982)
T KOG4653|consen  958 CLEEI  962 (982)
T ss_pred             HHHHH
Confidence            55433

>KOG2032 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.19  E-value=0.056  Score=51.50  Aligned_cols=269  Identities=14%  Similarity=0.118  Sum_probs=148.3

Q ss_pred             CCCHHHHHHhh----CCCCHHHHHHHHHHHhhhhCCCch-hHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcC
Q 011328          115 HGAVPIFVRLL----SSPTDDVREQAVWALGNVAGDSPK-CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG  189 (488)
Q Consensus       115 ~g~i~~L~~~L----~~~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~  189 (488)
                      .|.+..++..+    .+++..+|..|++.|++.+...|. ++..  ..-.+..++..|.+..+.+|+-.+..+|..+...
T Consensus       253 ~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th--~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~  330 (533)
T KOG2032|consen  253 TGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTH--KTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEK  330 (533)
T ss_pred             cccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHh--HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHh
Confidence            34444444433    347889999999999999988443 2222  2235667777776777888999999888887765


Q ss_pred             CCCCCh-hhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCc-hhHHHHHH--hCCHHHHHHhcCCCCcchHhHHHHH
Q 011328          190 KPQPLF-EQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTN-DKIQAVIE--AGVCPRLVELLRHPSPSVLIPALRT  265 (488)
Q Consensus       190 ~~~~~~-~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~-~~~~~~~~--~~~l~~L~~lL~~~~~~v~~~a~~~  265 (488)
                      ...... ...-++.-.+..+..+.+++.+..+...++.++.-.. .....+.+  .+....++-.+.++++.+. .||+.
T Consensus       331 ~~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va-~ACr~  409 (533)
T KOG2032|consen  331 ASNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVA-RACRS  409 (533)
T ss_pred             hhhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHH-HHHHH
Confidence            422222 2223455566677788999999999998888874322 12222221  1233445555666666544 45666


Q ss_pred             HhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHH-HHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHH
Q 011328          266 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKK-EACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIK  344 (488)
Q Consensus       266 L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~-~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~  344 (488)
                      ....+.-+- .++..     ...+-+.+ ...-...+. ..-| ...+....++....+...     ...++++.-+.++
T Consensus       410 ~~~~c~p~l-~rke~-----~~~~q~~l-d~~~~~~q~Fyn~~-c~~L~~i~~d~l~~~~t~-----~~~~f~sswe~vr  476 (533)
T KOG2032|consen  410 ELRTCYPNL-VRKEL-----YHLFQESL-DTDMARFQAFYNQW-CIQLNHIHPDILMLLLTE-----DQHIFSSSWEQVR  476 (533)
T ss_pred             HHHhcCchh-HHHHH-----HHHHhhhh-HHhHHHHHHHHHHH-HHHHhhhCHHHHHHHHHh-----chhheecchHHHH
Confidence            555554221 11111     11111122 110111111 1111 112222234433322221     2223333333555


Q ss_pred             HHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHH
Q 011328          345 KEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILK  399 (488)
Q Consensus       345 ~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~  399 (488)
                      ..+...-.+...+-.+....+..-..+...|..+...+-++++..+.+++..+..
T Consensus       477 ~aavl~t~~~vd~l~~~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~~  531 (533)
T KOG2032|consen  477 EAAVLKTTRSVDSLVRAACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLSV  531 (533)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHhh
Confidence            5555555555554444444444333456677777888889999999999887754

>KOG2032 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.14  E-value=0.063  Score=51.15  Aligned_cols=150  Identities=14%  Similarity=0.187  Sum_probs=96.1

Q ss_pred             HHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh-cCChhHHHHHHHHHHHhccCCCH-HHHHHH
Q 011328          289 LLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLL-NAEFEIKKEAAWAISNATSGGSN-EQIKFL  366 (488)
Q Consensus       289 L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~-~~~~~v~~~a~~aL~~l~~~~~~-~~~~~l  366 (488)
                      +..-..++ +..+|..|+..|+|.+.+.|+........ .+..++.-|- ..+.+|..++..+|..+...... +...++
T Consensus       263 la~ka~dp-~a~~r~~a~r~L~~~as~~P~kv~th~~~-~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~  340 (533)
T KOG2032|consen  263 LANKATDP-SAKSRGMACRGLGNTASGAPDKVRTHKTT-QLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYL  340 (533)
T ss_pred             HHHhccCc-hhHHHHHHHHHHHHHhccCcHHHHHhHHH-HHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhc
Confidence            33333556 77899999999999999755544444332 4555555444 44789999999999888754322 223333


Q ss_pred             HHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHh--hccHHHHHHhhcCCCHHHHHHH
Q 011328          367 VSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDD--AEGLEKIENLQSHDNTEIYEKA  444 (488)
Q Consensus       367 ~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~--~g~~~~L~~l~~~~~~~v~~~a  444 (488)
                      .  ++.-.+..++++.+++++..+...++.+.......           ++..|-+  .+....+.--+.++++.+..+.
T Consensus       341 l--~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~-----------~e~~Fte~v~k~~~~lllhl~d~~p~va~AC  407 (533)
T KOG2032|consen  341 L--NIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGG-----------WEEFFTEQVKKRLAPLLLHLQDPNPYVARAC  407 (533)
T ss_pred             h--hHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCC-----------chhhhHHHHHhccccceeeeCCCChHHHHHH
Confidence            3  35667788899999999999999999887765432           2333322  1222233333567788877766


Q ss_pred             HHHHHHhcC
Q 011328          445 VKILETYWV  453 (488)
Q Consensus       445 ~~~l~~~~~  453 (488)
                      ...+..+++
T Consensus       408 r~~~~~c~p  416 (533)
T KOG2032|consen  408 RSELRTCYP  416 (533)
T ss_pred             HHHHHhcCc
Confidence            666655443

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.12  E-value=0.027  Score=56.72  Aligned_cols=239  Identities=15%  Similarity=0.080  Sum_probs=154.2

Q ss_pred             HHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHH-hhcCCCCCChhhhhchHHHHHHhhccC-ChhHHHHHHHHHHHhc
Q 011328          151 RDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSN-FCRGKPQPLFEQTRPALPALERLIHSN-DDEVLTDACWALSYLS  228 (488)
Q Consensus       151 ~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~-l~~~~~~~~~~~~~~~~~~l~~ll~~~-~~~v~~~al~~L~~l~  228 (488)
                      +...+..|+...++.+. ....+..+.....+|.. +.-     ........++.+...+++. ...-...++.++.|++
T Consensus       497 ~~~~Ik~~~~~aLlrl~-~~q~e~akl~~~~aL~~~i~f-----~~~~~~~v~~~~~s~~~~d~~~~en~E~L~altnLa  570 (748)
T KOG4151|consen  497 RAKKIKPGGYEALLRLG-QQQFEEAKLKWYHALAGKIDF-----PGERSYEVVKPLDSALHNDEKGLENFEALEALTNLA  570 (748)
T ss_pred             cCccccccHHHHHHHHH-HHhchHHHHHHHHHHhhhcCC-----CCCchhhhhhhhcchhhhhHHHHHHHHHHHHhhccc
Confidence            34455667888888887 44555666666666662 111     1111223444444444432 2233556888999999


Q ss_pred             cCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhC-CChHHHHHHhcccchhhHHHHHHH
Q 011328          229 DGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINH-QALPCLLDLLTQNYKKSIKKEACW  307 (488)
Q Consensus       229 ~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-~~~~~L~~lL~~~~~~~v~~~a~~  307 (488)
                      ..+....+.+.+...++.+-..+..+++..+..++..+.||..+..-..+.+.+. ...+.....+... ......+++.
T Consensus       571 s~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~-~E~~~lA~a~  649 (748)
T KOG4151|consen  571 SISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVA-DEKFELAGAG  649 (748)
T ss_pred             CcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhh-hhHHhhhccc
Confidence            8776666668887777777778888899999999999999998766555555553 3444444455554 7777777777


Q ss_pred             HHHHHhcCCHHHHHH-HHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHH
Q 011328          308 TISNITAGNVNQIQA-IIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRI  386 (488)
Q Consensus       308 ~L~nl~~~~~~~~~~-l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v  386 (488)
                      ++..+..-...++.. .--......+..++.+.+..++...+....|+. ....+....+.+...++.+...-+......
T Consensus       650 a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~-~~~~ei~~~~~~~~~~~~l~~~~~~~~a~~  728 (748)
T KOG4151|consen  650 ALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLF-EALFEIAEKIFETEVMELLSGLQKLNRAPK  728 (748)
T ss_pred             cccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHH-HHHHHHHHHhccchHHHHHHHHHHhhhhhh
Confidence            777665533333332 222347788889999999999999999999954 445566667666666666666555444444


Q ss_pred             HHHHHHHHHHH
Q 011328          387 VTVCLEGLENI  397 (488)
Q Consensus       387 ~~~al~~L~~l  397 (488)
                      +..+..+|...
T Consensus       729 ~~~~~~~l~~a  739 (748)
T KOG4151|consen  729 REDAAPCLSAA  739 (748)
T ss_pred             hhhhhhHHHHH
Confidence            44444444433

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]

Probab=97.10  E-value=0.0066  Score=61.73  Aligned_cols=216  Identities=18%  Similarity=0.168  Sum_probs=140.2

Q ss_pred             CCHHHHHHHHHHHhhhh-----CCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCC---------CC
Q 011328          128 PTDDVREQAVWALGNVA-----GDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP---------QP  193 (488)
Q Consensus       128 ~~~~v~~~a~~~L~~l~-----~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~---------~~  193 (488)
                      ++.+.++.|+..+.-+.     +++++.      ..+...++..|   +++++-..+..++.-+..+.+         ..
T Consensus       786 gs~dls~~al~~l~Wv~KaLl~R~~~~s------~~ia~klld~L---s~~~~g~~aa~~fsiim~D~~~~~~r~~~a~~  856 (1030)
T KOG1967|consen  786 GSLDLSEIALTVLAWVTKALLLRNHPES------SEIAEKLLDLL---SGPSTGSPAAKLFSIIMSDSNPLLKRKGHAEP  856 (1030)
T ss_pred             CCcchhhHHHHHHHHHHHHHHHcCCccc------chHHHHHHHhc---CCccccchHHHhhHhhhccChHHhhhccccch
Confidence            34555666665554442     333321      11344566666   234444555555555544331         11


Q ss_pred             Ch----hhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHH--hCCHHHHHHhcCCCCcchHhHHHHHHh
Q 011328          194 LF----EQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIE--AGVCPRLVELLRHPSPSVLIPALRTVG  267 (488)
Q Consensus       194 ~~----~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~--~~~l~~L~~lL~~~~~~v~~~a~~~L~  267 (488)
                      ..    .....++|.+++.+.+.+...+..-+.+|.++..+-+..  .+..  ..++|.|++.|.-++..+|..++.++.
T Consensus       857 riLykQRfF~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~--vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~  934 (1030)
T KOG1967|consen  857 RILYKQRFFCDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQ--VLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIP  934 (1030)
T ss_pred             hHHHHHHHHHhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHH--hhccchhhHHHHHHHhcCCCccchhhhHhhhhh
Confidence            11    223678899999998777888888888898888766542  2222  267888999999999999999999999


Q ss_pred             HhhcCCchhhHHHhhCCChHHHHHHhcccch--hhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHH
Q 011328          268 NIVTGDDMQTQCIINHQALPCLLDLLTQNYK--KSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKK  345 (488)
Q Consensus       268 ~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~--~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~  345 (488)
                      .+....+.....-.. .+++.++.+=.+..+  ..+|..|+.++..+.+.-|...-......++..|...|.++..-||+
T Consensus       935 ~~l~~~~tL~t~~~~-Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~ 1013 (1030)
T KOG1967|consen  935 MLLTESETLQTEHLS-TLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRK 1013 (1030)
T ss_pred             HHHHhccccchHHHh-HHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHH
Confidence            888765544333222 467777776666522  67999999999999983233222333445788888899998888999


Q ss_pred             HHHHHHHHhc
Q 011328          346 EAAWAISNAT  355 (488)
Q Consensus       346 ~a~~aL~~l~  355 (488)
                      +|..+=.+..
T Consensus      1014 eAv~tR~~W~ 1023 (1030)
T KOG1967|consen 1014 EAVDTRQNWY 1023 (1030)
T ss_pred             HHHHHhhhhh
Confidence            9987755543

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=97.08  E-value=0.22  Score=49.47  Aligned_cols=179  Identities=15%  Similarity=0.125  Sum_probs=111.2

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh
Q 011328           30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT  109 (488)
Q Consensus        30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~  109 (488)
                      +....++..-+ ++...+..|+..+.+....- ++..     ..++..++.|+.+.+ ..||..|++.|-.+|.++++..
T Consensus        23 ~~y~~il~~~k-g~~k~K~Laaq~I~kffk~F-P~l~-----~~Ai~a~~DLcEDed-~~iR~~aik~lp~~ck~~~~~v   94 (556)
T PF05918_consen   23 EDYKEILDGVK-GSPKEKRLAAQFIPKFFKHF-PDLQ-----EEAINAQLDLCEDED-VQIRKQAIKGLPQLCKDNPEHV   94 (556)
T ss_dssp             HHHHHHHHGGG-S-HHHHHHHHHHHHHHHCC--GGGH-----HHHHHHHHHHHT-SS-HHHHHHHHHHGGGG--T--T-H
T ss_pred             HHHHHHHHHcc-CCHHHHHHHHHHHHHHHhhC-hhhH-----HHHHHHHHHHHhccc-HHHHHHHHHhHHHHHHhHHHHH
Confidence            34455666655 57889999999999988765 3333     246789999999999 8999999999999999888877


Q ss_pred             HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhc--ccccHhHHHHHHHHHHHhh
Q 011328          110 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN--EHAKLSMLRNATWTLSNFC  187 (488)
Q Consensus       110 ~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~--~~~~~~v~~~a~~~L~~l~  187 (488)
                      ..+     ...|.++|.++++.-...+-.+|..+...++.        +.+..++..+.  ..+++.+++.++..|..=.
T Consensus        95 ~kv-----aDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k--------~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl  161 (556)
T PF05918_consen   95 SKV-----ADVLVQLLQTDDPVELDAVKNSLMSLLKQDPK--------GTLTGLFSQIESSKSGDEQVRERALKFLREKL  161 (556)
T ss_dssp             HHH-----HHHHHHHTT---HHHHHHHHHHHHHHHHH-HH--------HHHHHHHHHHH---HS-HHHHHHHHHHHHHHG
T ss_pred             hHH-----HHHHHHHHhcccHHHHHHHHHHHHHHHhcCcH--------HHHHHHHHHHHhcccCchHHHHHHHHHHHHHH
Confidence            766     58899999998877777777777777644432        24556666663  2567789999988775433


Q ss_pred             cCC--CCCC--hhhhhchHHHHHHhhccCChhHHHHHHHHHHHhcc
Q 011328          188 RGK--PQPL--FEQTRPALPALERLIHSNDDEVLTDACWALSYLSD  229 (488)
Q Consensus       188 ~~~--~~~~--~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~  229 (488)
                      ..-  ....  .....-++..+-+.|.+-...--...+.+|..+-.
T Consensus       162 ~~l~~~~~~p~~E~e~~i~~~ikkvL~DVTaeEF~l~m~lL~~lk~  207 (556)
T PF05918_consen  162 KPLKPELLTPQKEMEEFIVDEIKKVLQDVTAEEFELFMSLLKSLKI  207 (556)
T ss_dssp             GGS-TTTS---HHHHHHHHHHHHHHCTT--HHHHHHHHHHHHTSGG
T ss_pred             hhCcHHHhhchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhCcc
Confidence            322  1112  23344555666667765444444445555555544

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=97.08  E-value=0.19  Score=46.71  Aligned_cols=171  Identities=15%  Similarity=0.151  Sum_probs=113.9

Q ss_pred             chHHHHH-HhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCch-hh
Q 011328          200 PALPALE-RLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDM-QT  277 (488)
Q Consensus       200 ~~~~~l~-~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~-~~  277 (488)
                      +.+..++ ..+++.+..++..++.+++-.+--+.+...     ..++.+...+..+++.++..|+.++..+...... ..
T Consensus        26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~-----~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~  100 (298)
T PF12719_consen   26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAK-----EHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIF  100 (298)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHH-----HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhc
Confidence            5555444 788899999999999999998866543333     4456777777777889999999999988753321 11


Q ss_pred             HH-------HhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC----ChhHHHH
Q 011328          278 QC-------IINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA----EFEIKKE  346 (488)
Q Consensus       278 ~~-------~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~----~~~v~~~  346 (488)
                      ..       .....+.+.+.+.+.+. +++++..|+..++.|...+.-.-    ...++..|+-..-++    +..+|+.
T Consensus       101 ~~~~~~~~~~~~~~l~~~l~~~l~~~-~~~~~~~a~EGl~KLlL~~~i~~----~~~vL~~Lll~yF~p~t~~~~~LrQ~  175 (298)
T PF12719_consen  101 DSESDNDESVDSKSLLKILTKFLDSE-NPELQAIAVEGLCKLLLSGRISD----PPKVLSRLLLLYFNPSTEDNQRLRQC  175 (298)
T ss_pred             cchhccCccchHhHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHhcCCCCc----HHHHHHHHHHHHcCcccCCcHHHHHH
Confidence            11       11235778888899888 88999999999999876311100    112444555555444    4567766


Q ss_pred             HHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCC
Q 011328          347 AAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCP  382 (488)
Q Consensus       347 a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~  382 (488)
                      -...+-..+... ++. +......+++.+..+.+..
T Consensus       176 L~~Ffp~y~~s~-~~~-Q~~l~~~f~~~l~~~~~~~  209 (298)
T PF12719_consen  176 LSVFFPVYASSS-PEN-QERLAEAFLPTLRTLSNAP  209 (298)
T ss_pred             HHHHHHHHHcCC-HHH-HHHHHHHHHHHHHHHHhCc
Confidence            666666666644 333 3445557778777777653

>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing

Probab=97.08  E-value=0.031  Score=53.29  Aligned_cols=222  Identities=13%  Similarity=0.130  Sum_probs=135.3

Q ss_pred             HHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCC-chhHHHHHhcCChHHHHHHhcccc
Q 011328           93 EAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDS-PKCRDLVLSNGALMPLLAQFNEHA  171 (488)
Q Consensus        93 ~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~l~~L~~ll~~~~  171 (488)
                      .|++.|-.+....+..-..+.+.+++..++..++.+-....+.  .-...-.... ++.+.....       ...+ ...
T Consensus         3 ~av~~ld~~~~~~~~a~~~f~~~~G~~~li~rl~~Ev~~~~~~--~~~~~~~~~~~~~~~~~~~~-------~~~i-~~~   72 (379)
T PF06025_consen    3 RAVRFLDTFIDSSPDAFAAFRNLNGLDILIDRLQYEVDFALEE--NKNEEAGSGIPPEYKESSVD-------GYSI-SYQ   72 (379)
T ss_pred             HHHHHHHHHHhccHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc--ccccCCCCCCCCCccccccc-------cccc-CHH
Confidence            4667777777766777778888999999999886532222221  0000000000 000000000       0000 111


Q ss_pred             cHhHHHHHHHHHHHhhc-CC---CCCChhhh-hchHHHHHHhhccC---ChhHHHHHHHHHHHhccCCchhHHHHHHhCC
Q 011328          172 KLSMLRNATWTLSNFCR-GK---PQPLFEQT-RPALPALERLIHSN---DDEVLTDACWALSYLSDGTNDKIQAVIEAGV  243 (488)
Q Consensus       172 ~~~v~~~a~~~L~~l~~-~~---~~~~~~~~-~~~~~~l~~ll~~~---~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~  243 (488)
                      .....+..+.++..+.. +.   ....-... ...+..|..++++.   -+.+...++..+..+..+.+.....+.+.|+
T Consensus        73 r~~llK~lLk~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl  152 (379)
T PF06025_consen   73 RQQLLKSLLKFLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGL  152 (379)
T ss_pred             HHHHHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCC
Confidence            22334455555555555 22   11222233 45666777777765   4788999999999999999988898999999


Q ss_pred             HHHHHHhcC-C---CCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhh------HHHHHHHHHHHHh
Q 011328          244 CPRLVELLR-H---PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKS------IKKEACWTISNIT  313 (488)
Q Consensus       244 l~~L~~lL~-~---~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~------v~~~a~~~L~nl~  313 (488)
                      .+.+++.+. .   ++.++....-.+++.+|- +....+.+.+.+.++.+++++.++....      .-......+-.|.
T Consensus       153 ~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicL-N~~Gl~~~~~~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~  231 (379)
T PF06025_consen  153 IDAFLDAITAKGILPSSEVLTSLPNVLSAICL-NNRGLEKVKSSNPLDKLFEIFTSPDYVKALRRRDTASNLGNSFDELM  231 (379)
T ss_pred             hHHHHHHHhccCCCCcHHHHHHHHHHHhHHhc-CHHHHHHHHhcChHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHH
Confidence            999999988 4   345666677778888887 5556777888899999999998763221      1122233444566


Q ss_pred             cCCHHHHHHHHH
Q 011328          314 AGNVNQIQAIIE  325 (488)
Q Consensus       314 ~~~~~~~~~l~~  325 (488)
                      ++.+..+..+++
T Consensus       232 RH~p~Lk~~i~~  243 (379)
T PF06025_consen  232 RHHPSLKPDIID  243 (379)
T ss_pred             ccCHHHHHHHHH
Confidence            676766555554

This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.

>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]

Probab=97.04  E-value=0.041  Score=47.43  Aligned_cols=143  Identities=13%  Similarity=0.177  Sum_probs=103.6

Q ss_pred             HHH-HHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCC----CChhHHHHHHHHHHHhcC-CCchhhHHHHhCCCHH
Q 011328           46 IQL-DATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRD----DFPQLQFEAAWALTNIAS-GTSENTRVVIDHGAVP  119 (488)
Q Consensus        46 ~~~-~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~----~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~g~i~  119 (488)
                      -|. .|+..|..+++ + ++....+.+..+--.+-.+|...    ..+.+|..++.+++.+.. ++.+....+...+++|
T Consensus        94 nRVcnaL~LlQcvAS-H-pdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVP  171 (293)
T KOG3036|consen   94 NRVCNALALLQCVAS-H-PDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVP  171 (293)
T ss_pred             chHHHHHHHHHHHhc-C-cchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHH
Confidence            344 44555555554 4 67788888877766666666532    237799999999999998 4456677788999999


Q ss_pred             HHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhc-------CChHHHHHHhcccccHhHHHHHHHHHHHhhcCC
Q 011328          120 IFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSN-------GALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK  190 (488)
Q Consensus       120 ~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-------~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~  190 (488)
                      ..++.++.+++..+..|..++..+..++.+........       ..+..++..+.+.++..+..+++.+..+|+.+.
T Consensus       172 lCLrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnp  249 (293)
T KOG3036|consen  172 LCLRIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNP  249 (293)
T ss_pred             HHHHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCH
Confidence            99999999999999999999999987766543222111       134445555556678888889999998888774

>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]

Probab=97.03  E-value=0.1  Score=52.22  Aligned_cols=295  Identities=16%  Similarity=0.083  Sum_probs=165.5

Q ss_pred             HHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCC-------CChhHHHHHHHHHHHhcC--CCchhhHHHHhCCCHHH
Q 011328           50 ATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRD-------DFPQLQFEAAWALTNIAS--GTSENTRVVIDHGAVPI  120 (488)
Q Consensus        50 a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~-------~~~~v~~~a~~~L~~l~~--~~~~~~~~~~~~g~i~~  120 (488)
                      |+..+....++....+     -.|+++.+...|...       +++.-.+.|++.++++..  ..+....-+++.=+++.
T Consensus       390 al~fl~~~~sKrke~T-----fqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~h  464 (970)
T COG5656         390 ALFFLIISKSKRKEET-----FQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNH  464 (970)
T ss_pred             HHHHHHHHhcccchhh-----hhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHH
Confidence            5555555554432221     247889999888321       234556778888888765  33344444556566788


Q ss_pred             HHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhh--
Q 011328          121 FVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQT--  198 (488)
Q Consensus       121 L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~--  198 (488)
                      ++..++++.--++..|+..++.+..+-+   +...-..+.+...+.+ ++++-.++..|+.++..+..+.  ......  
T Consensus       465 v~P~f~s~ygfL~Srace~is~~eeDfk---d~~ill~aye~t~ncl-~nn~lpv~ieAalAlq~fi~~~--q~h~k~sa  538 (970)
T COG5656         465 VIPAFRSNYGFLKSRACEFISTIEEDFK---DNGILLEAYENTHNCL-KNNHLPVMIEAALALQFFIFNE--QSHEKFSA  538 (970)
T ss_pred             hhHhhcCcccchHHHHHHHHHHHHHhcc---cchHHHHHHHHHHHHH-hcCCcchhhhHHHHHHHHHhch--hhhHHHHh
Confidence            8888899889999999999999954432   2222333556666777 5577889999999999888775  222222  


Q ss_pred             --hchHHHHHHhhccCChhHHHHHHHHHHH-hccCCchhHHHHHHh---CCHHHHHHhcCCCC------cchHhHHHHHH
Q 011328          199 --RPALPALERLIHSNDDEVLTDACWALSY-LSDGTNDKIQAVIEA---GVCPRLVELLRHPS------PSVLIPALRTV  266 (488)
Q Consensus       199 --~~~~~~l~~ll~~~~~~v~~~al~~L~~-l~~~~~~~~~~~~~~---~~l~~L~~lL~~~~------~~v~~~a~~~L  266 (488)
                        .+.++.++.+-+.-+.++...++..+.. .+..-......+...   ..+.....++.+++      ++-+..|.++|
T Consensus       539 hVp~tmekLLsLSn~feiD~LS~vMe~fVe~fseELspfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL  618 (970)
T COG5656         539 HVPETMEKLLSLSNTFEIDPLSMVMESFVEYFSEELSPFAPELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGIL  618 (970)
T ss_pred             hhhHHHHHHHHhcccccchHHHHHHHHHHHHhHHhhchhHHHHHHHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHH
Confidence              3333333333333355555555544432 222111111112110   22223333443321      23334455555


Q ss_pred             hHhhc---C--CchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCh
Q 011328          267 GNIVT---G--DDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEF  341 (488)
Q Consensus       267 ~~l~~---~--~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~  341 (488)
                      ..+..   .  +....-.-++....|.+--++++. -.++-.+|+..+-++.....+.-  -+.-|+.+.+.+++.+...
T Consensus       619 ~T~~smiLSlen~p~vLk~le~slypvi~Filkn~-i~dfy~Ea~dildg~tf~skeI~--pimwgi~Ell~~~l~~~~t  695 (970)
T COG5656         619 RTIESMILSLENRPLVLKYLEVSLYPVISFILKNE-ISDFYQEALDILDGYTFMSKEIE--PIMWGIFELLLNLLIDEIT  695 (970)
T ss_pred             HHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHhhhhHHHHHhh--hhhhHHHHHHHhcccccch
Confidence            44432   1  111111223445667777777777 77788888888887765423321  1223455555555555543


Q ss_pred             -hHHHHHHHHHHHhccCC
Q 011328          342 -EIKKEAAWAISNATSGG  358 (488)
Q Consensus       342 -~v~~~a~~aL~~l~~~~  358 (488)
                       .-.+.+.-++.|+...+
T Consensus       696 ~~y~ee~~~al~nfityG  713 (970)
T COG5656         696 AVYSEEVADALDNFITYG  713 (970)
T ss_pred             hhhHHHHHHHHHHHHHhC
Confidence             55678888999998766

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.02  E-value=0.023  Score=57.64  Aligned_cols=225  Identities=12%  Similarity=0.142  Sum_probs=143.8

Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhh
Q 011328          119 PIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQT  198 (488)
Q Consensus       119 ~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~  198 (488)
                      ..-+..++++...++..++..+..+.+... ....+...+++...+..+ ++.|+-+.-+|...+..||.-.       .
T Consensus       730 qeai~sl~d~qvpik~~gL~~l~~l~e~r~-~~~~~~~ekvl~i~ld~L-kdedsyvyLnaI~gv~~Lcevy-------~  800 (982)
T KOG4653|consen  730 QEAISSLHDDQVPIKGYGLQMLRHLIEKRK-KATLIQGEKVLAIALDTL-KDEDSYVYLNAIRGVVSLCEVY-------P  800 (982)
T ss_pred             HHHHHHhcCCcccchHHHHHHHHHHHHhcc-hhhhhhHHHHHHHHHHHh-cccCceeeHHHHHHHHHHHHhc-------c
Confidence            334445556778889999999999987543 345566667888888999 7888888889999888888653       2


Q ss_pred             hchHHHHHHhhcc-C---ChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCc
Q 011328          199 RPALPALERLIHS-N---DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDD  274 (488)
Q Consensus       199 ~~~~~~l~~ll~~-~---~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~  274 (488)
                      ..++|.+.+.-.+ .   ..+.+..+-.++.++...-.+....... -++..++...++++...|..++..+++++....
T Consensus       801 e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a  879 (982)
T KOG4653|consen  801 EDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGVREPDHEFRASSLANLGQLCQLLA  879 (982)
T ss_pred             hhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHh
Confidence            4567777764322 2   1234444456666666544433332332 566778888888888889999999999997554


Q ss_pred             hhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHH---HcCChHHHHHHHhcC-ChhHHHHHHHH
Q 011328          275 MQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAII---EAGIIGPLVNLLLNA-EFEIKKEAAWA  350 (488)
Q Consensus       275 ~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~---~~~~l~~L~~ll~~~-~~~v~~~a~~a  350 (488)
                      ......+. .+...++.+.+.+...-+|+.|+..+..+..+.....-.+.   .......+....... +..++..|..+
T Consensus       880 ~~vsd~~~-ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~  958 (982)
T KOG4653|consen  880 FQVSDFFH-EVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLC  958 (982)
T ss_pred             hhhhHHHH-HHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHH
Confidence            33332222 35566666666665889999999999999875433222222   112333333333333 44466666655


Q ss_pred             HHHh
Q 011328          351 ISNA  354 (488)
Q Consensus       351 L~~l  354 (488)
                      +..+
T Consensus       959 leei  962 (982)
T KOG4653|consen  959 LEEI  962 (982)
T ss_pred             HHHH
Confidence            5444

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=97.01  E-value=0.077  Score=49.26  Aligned_cols=171  Identities=16%  Similarity=0.126  Sum_probs=110.6

Q ss_pred             CCHHHHH-HhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCC-chh
Q 011328           73 GVVPRFI-EFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDS-PKC  150 (488)
Q Consensus        73 ~~i~~L~-~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~-~~~  150 (488)
                      +.++.|+ ..+++.+ +.+|..|+++|+-.+--+.+.....     ++.+...++.++..++..|+.++..+.... ...
T Consensus        26 ~ll~~lI~P~v~~~~-~~vR~~al~cLGl~~Lld~~~a~~~-----l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~   99 (298)
T PF12719_consen   26 SLLDSLILPAVQSSD-PAVRELALKCLGLCCLLDKELAKEH-----LPLFLQALQKDDEEVKITALKALFDLLLTHGIDI   99 (298)
T ss_pred             HHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHhChHHHHHH-----HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchh
Confidence            4454444 6678888 8999999999999988555444333     677778787789999999999999886321 111


Q ss_pred             HHH-------HHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcc----CChhHHHH
Q 011328          151 RDL-------VLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHS----NDDEVLTD  219 (488)
Q Consensus       151 ~~~-------~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~----~~~~v~~~  219 (488)
                      -+.       ......+..+.+.+ .+.++.++..++..++.|.-......   ...++..|+-+.-+    ++..++..
T Consensus       100 ~~~~~~~~~~~~~~~l~~~l~~~l-~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~  175 (298)
T PF12719_consen  100 FDSESDNDESVDSKSLLKILTKFL-DSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQC  175 (298)
T ss_pred             ccchhccCccchHhHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHH
Confidence            111       11123455666666 56688999999999999887653222   23344444433322    34667776


Q ss_pred             HHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCC
Q 011328          220 ACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP  254 (488)
Q Consensus       220 al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~  254 (488)
                      .-..+-..+...... +..+...+++.+..+....
T Consensus       176 L~~Ffp~y~~s~~~~-Q~~l~~~f~~~l~~~~~~~  209 (298)
T PF12719_consen  176 LSVFFPVYASSSPEN-QERLAEAFLPTLRTLSNAP  209 (298)
T ss_pred             HHHHHHHHHcCCHHH-HHHHHHHHHHHHHHHHhCc
Confidence            666777777666655 3455556677777766543

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=96.98  E-value=0.13  Score=51.40  Aligned_cols=108  Identities=19%  Similarity=0.187  Sum_probs=80.8

Q ss_pred             hhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchh
Q 011328          197 QTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQ  276 (488)
Q Consensus       197 ~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~  276 (488)
                      .+.+.+..+++...+++..|+..++..|..+.......-+ .+-.++...+..-+.+..|.||..|+.+|+.+=......
T Consensus        82 lV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd-~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~de  160 (892)
T KOG2025|consen   82 LVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDD-DVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDE  160 (892)
T ss_pred             HHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCH-HHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCC
Confidence            5567777788888889999999999999998875433323 333367777888888888999999999999986321111


Q ss_pred             hHHHhhCCChHHHHHHhcccchhhHHHHHHHHHH
Q 011328          277 TQCIINHQALPCLLDLLTQNYKKSIKKEACWTIS  310 (488)
Q Consensus       277 ~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~  310 (488)
                           +..+...+..+++...+++||+.|+..+.
T Consensus       161 -----e~~v~n~l~~liqnDpS~EVRRaaLsnI~  189 (892)
T KOG2025|consen  161 -----ECPVVNLLKDLIQNDPSDEVRRAALSNIS  189 (892)
T ss_pred             -----cccHHHHHHHHHhcCCcHHHHHHHHHhhc
Confidence                 23567778888887779999998776554

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.97  E-value=0.017  Score=58.18  Aligned_cols=243  Identities=14%  Similarity=0.068  Sum_probs=159.9

Q ss_pred             CchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHh-hhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHH
Q 011328          105 TSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALG-NVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTL  183 (488)
Q Consensus       105 ~~~~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~-~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L  183 (488)
                      ...-+...++.|+...|+++.....+..+.....+|. .+......      ....++++...+..+....-...++.++
T Consensus       493 ~K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~~~------~~~v~~~~~s~~~~d~~~~en~E~L~al  566 (748)
T KOG4151|consen  493 EKYERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDFPGER------SYEVVKPLDSALHNDEKGLENFEALEAL  566 (748)
T ss_pred             hHHhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCCCc------hhhhhhhhcchhhhhHHHHHHHHHHHHh
Confidence            3444555678899999999988877888877888887 33221111      1124555555553333222334677788


Q ss_pred             HHhhcCCC-CCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHh-CCHHHHHHhcCCCCcchHhH
Q 011328          184 SNFCRGKP-QPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA-GVCPRLVELLRHPSPSVLIP  261 (488)
Q Consensus       184 ~~l~~~~~-~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~-~~l~~L~~lL~~~~~~v~~~  261 (488)
                      .||+.... ..........++.+-.++..+++..+..++..+.|+...+.-....+.+. ..++.....+....+....+
T Consensus       567 tnLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~lA  646 (748)
T KOG4151|consen  567 TNLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFELA  646 (748)
T ss_pred             hcccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhhh
Confidence            88887663 33334445566666777788899999999999999998776555555553 44555555565556666666


Q ss_pred             HHHHHhHhhcCCchhhH-HHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCC
Q 011328          262 ALRTVGNIVTGDDMQTQ-CIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAE  340 (488)
Q Consensus       262 a~~~L~~l~~~~~~~~~-~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~  340 (488)
                      ++.++..++........ ..--......+..++.+. +..++...+..+.|+.....+....++....++.+..+-....
T Consensus       647 ~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~-~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~~~~~l~~~~~~~~  725 (748)
T KOG4151|consen  647 GAGALAAITSVVENHCSRILELLEWLEILVRAIQDE-DDEIQHRGLVIILNLFEALFEIAEKIFETEVMELLSGLQKLNR  725 (748)
T ss_pred             ccccccchhhcchhhhhhHHHhhcchHHHHHhhcCc-hhhhhhhhhhhhhhHHHHHHHHHHHhccchHHHHHHHHHHhhh
Confidence            66666655554443333 223346788899999999 9999999999999976666777777777777777766655544


Q ss_pred             hhHHHHHHHHHHHh
Q 011328          341 FEIKKEAAWAISNA  354 (488)
Q Consensus       341 ~~v~~~a~~aL~~l  354 (488)
                      ...++.+..+|...
T Consensus       726 a~~~~~~~~~l~~a  739 (748)
T KOG4151|consen  726 APKREDAAPCLSAA  739 (748)
T ss_pred             hhhhhhhhhHHHHH
Confidence            45555555555443

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []

Probab=96.87  E-value=0.069  Score=47.03  Aligned_cols=187  Identities=12%  Similarity=0.154  Sum_probs=119.0

Q ss_pred             CChhHHHHHHHHHHHhccCCchhHHHHHHh-CCHHHHHHh-------cCCCC--c---chHhHHHHHHhHhhcCCchhhH
Q 011328          212 NDDEVLTDACWALSYLSDGTNDKIQAVIEA-GVCPRLVEL-------LRHPS--P---SVLIPALRTVGNIVTGDDMQTQ  278 (488)
Q Consensus       212 ~~~~v~~~al~~L~~l~~~~~~~~~~~~~~-~~l~~L~~l-------L~~~~--~---~v~~~a~~~L~~l~~~~~~~~~  278 (488)
                      .+++.++.|+.-|+.--+..++..-.+... |.+..|++=       +..+.  .   .-.-.|+..+..++. .++.+.
T Consensus         7 ~~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAs-hpetr~   85 (262)
T PF04078_consen    7 CNPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVAS-HPETRM   85 (262)
T ss_dssp             SSHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH--TTTHH
T ss_pred             cCcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHc-ChHHHH
Confidence            356778888877776665555554444443 545444332       22221  1   122245555666666 566778


Q ss_pred             HHhhCCChHHHHHHhccc----chhhHHHHHHHHHHHHhc-CCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHH
Q 011328          279 CIINHQALPCLLDLLTQN----YKKSIKKEACWTISNITA-GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISN  353 (488)
Q Consensus       279 ~~~~~~~~~~L~~lL~~~----~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~  353 (488)
                      .++++++.-.+..+|+..    ..+.+|-.++++++.+.. .+++.+..+.+..++|..++.++.++.-.|..|...+..
T Consensus        86 ~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqK  165 (262)
T PF04078_consen   86 PFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQK  165 (262)
T ss_dssp             HHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred             HHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            888988888888888543    246788999999999998 568888889999999999999999988888999999999


Q ss_pred             hccCCCHHHHHHHHHC--------CChHHHH-hhcCCCCHHHHHHHHHHHHHHHHhh
Q 011328          354 ATSGGSNEQIKFLVSQ--------GCIKPLC-DLLNCPDPRIVTVCLEGLENILKAG  401 (488)
Q Consensus       354 l~~~~~~~~~~~l~~~--------~~i~~L~-~ll~~~~~~v~~~al~~L~~l~~~~  401 (488)
                      +....  ....++.+.        .++..++ .+.+.+++.+.++++.+..++....
T Consensus       166 IL~dd--~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnp  220 (262)
T PF04078_consen  166 ILLDD--VGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNP  220 (262)
T ss_dssp             HHHSH--HHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTST
T ss_pred             HHcch--hHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCH
Confidence            88643  333333221        1222222 2344667777777777777665443

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=96.84  E-value=0.0073  Score=45.01  Aligned_cols=68  Identities=16%  Similarity=0.235  Sum_probs=57.4

Q ss_pred             hHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhc-ccchhhHHHHHHHHHHHHhcCCHHHHHHHHH
Q 011328          258 VLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLT-QNYKKSIKKEACWTISNITAGNVNQIQAIIE  325 (488)
Q Consensus       258 v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~-~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~  325 (488)
                      .+...+.+|++++..++.....+.+.++++.+++.-. ++.+|-+|+.|.+++.|++.+++++...+.+
T Consensus         2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~   70 (102)
T PF09759_consen    2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ   70 (102)
T ss_pred             cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence            4677899999999999988888899999999998653 3338999999999999999998888766654

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=96.80  E-value=0.043  Score=57.70  Aligned_cols=147  Identities=18%  Similarity=0.182  Sum_probs=116.8

Q ss_pred             hhhhchHHHHHHhhcc----CChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcC-CCCcchHhHHHHHHhHhh
Q 011328          196 EQTRPALPALERLIHS----NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR-HPSPSVLIPALRTVGNIV  270 (488)
Q Consensus       196 ~~~~~~~~~l~~ll~~----~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~-~~~~~v~~~a~~~L~~l~  270 (488)
                      .....+.|.+++..++    .++.++..|.-+|+.+..-+.....     .-++.|+..+. +++|.+|..+.-+++.++
T Consensus       915 ~lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fce-----s~l~llftimeksp~p~IRsN~VvalgDla  989 (1251)
T KOG0414|consen  915 SLLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCE-----SHLPLLFTIMEKSPSPRIRSNLVVALGDLA  989 (1251)
T ss_pred             HHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHH-----HHHHHHHHHHhcCCCceeeecchheccchh
Confidence            3446778888888854    5799999999999998765543332     55788999997 789999999999999999


Q ss_pred             cCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHH
Q 011328          271 TGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWA  350 (488)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~a  350 (488)
                      ...+....     .+-+.|...|.++ ++.+|+.|..++++|...+-     +--.|.++.+..++.+++..++.-|-..
T Consensus       990 v~fpnlie-----~~T~~Ly~rL~D~-~~~vRkta~lvlshLILndm-----iKVKGql~eMA~cl~D~~~~IsdlAk~F 1058 (1251)
T KOG0414|consen  990 VRFPNLIE-----PWTEHLYRRLRDE-SPSVRKTALLVLSHLILNDM-----IKVKGQLSEMALCLEDPNAEISDLAKSF 1058 (1251)
T ss_pred             hhcccccc-----hhhHHHHHHhcCc-cHHHHHHHHHHHHHHHHhhh-----hHhcccHHHHHHHhcCCcHHHHHHHHHH
Confidence            87765543     4567899999999 99999999999999987522     2235889999999999999999888877


Q ss_pred             HHHhccCC
Q 011328          351 ISNATSGG  358 (488)
Q Consensus       351 L~~l~~~~  358 (488)
                      ...++..+
T Consensus      1059 F~Els~k~ 1066 (1251)
T KOG0414|consen 1059 FKELSSKG 1066 (1251)
T ss_pred             HHHhhhcc
Confidence            77776554

>PRK14707 hypothetical protein; Provisional

Probab=96.78  E-value=0.93  Score=51.29  Aligned_cols=420  Identities=15%  Similarity=0.101  Sum_probs=217.8

Q ss_pred             HHHHHHHhcC--CCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhc-CCCChhHHHHHHHHHHHhcCCCchh
Q 011328           32 LPAMVAGVWS--DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLS-RDDFPQLQFEAAWALTNIASGTSEN  108 (488)
Q Consensus        32 i~~l~~~L~s--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~-~~~~~~v~~~a~~~L~~l~~~~~~~  108 (488)
                      +..+++..+.  ++.+-+..+.+...- ++.+ ....+.+-. -.|-.+++-+. =+++++.+..+...-..++. ....
T Consensus       165 ~~lllNafSKw~~~~~c~~aa~~la~~-~~~~-d~~~~~~~~-q~ia~~lNa~sKWp~~~~c~~aa~~la~~l~~-~~~l  240 (2710)
T PRK14707        165 ISLALNAFSKWSDNPDCQAVAPRFAAL-VASD-DRLRSAMDA-QGVATVLNALCKWPDTPDCGNAVSALAERLAD-ESRL  240 (2710)
T ss_pred             HHHHHHHhhcCCCCchHHHHHHHHHHH-hcCC-hhhhcccch-HHHHHHHHHHhcCCCChhHHHHHHHHHHHHcC-cHHH
Confidence            3445555542  455555444443333 4333 222333322 33444444443 34546666555555555555 5555


Q ss_pred             hHHHHhCCCHHHHHHhhCC-CCH-HHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHH-H
Q 011328          109 TRVVIDHGAVPIFVRLLSS-PTD-DVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLS-N  185 (488)
Q Consensus       109 ~~~~~~~g~i~~L~~~L~~-~~~-~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~-~  185 (488)
                      +..+-..| +-..+..|.. ++. ..+..+..+-..++ +.+..++.+-. ..+...++-|.+..+..+...+...|. .
T Consensus       241 ~~~~~~q~-va~~lN~lsKwp~~~~C~~a~~~lA~rl~-~~~~l~~al~~-q~vanalNalSKwpd~~vc~~Aa~~la~r  317 (2710)
T PRK14707        241 RNELKPQE-LGNALNALSKWADTPVCAAAASALAERLV-DDPGLRKALDP-INVTQALNALSKWADLPVCAEAAIALAER  317 (2710)
T ss_pred             HHhCChHH-HHHHHHHHhcCCCchHHHHHHHHHHHHHh-hhHHHHHhcCH-HHHHHHHhhhhcCCCchHHHHHHHHHHHH
Confidence            55554445 4444454544 444 44444444444454 44444444332 234455555657777777766666554 4


Q ss_pred             hhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCC-CCcchHhHHHH
Q 011328          186 FCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH-PSPSVLIPALR  264 (488)
Q Consensus       186 l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-~~~~v~~~a~~  264 (488)
                      |..+......+...++-..|..+-+-++..+-..+...|..-...+++..+ -++..++...++.+.. ++..+-..+..
T Consensus       318 l~~d~~l~~~~~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~-~l~~q~~a~~lNalsKWp~~~~c~~aa~  396 (2710)
T PRK14707        318 LADDPELCKALNARGLSTALNALSKWPDNPVCAAAVSALAERLVADPELRK-DLEPQGVSSVLNALSKWPDTPVCAAAAS  396 (2710)
T ss_pred             HhccHhhhhccchHHHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhc-ccchhHHHHHHhhhhcCCCchHHHHHHH
Confidence            554332222222233333333333446666666666666544444444433 2333455666666654 55555556666


Q ss_pred             HHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHH
Q 011328          265 TVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIK  344 (488)
Q Consensus       265 ~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~  344 (488)
                      .|..-.....+..+.+ +...+...+.-|..-.+..+...++..|.--..++.+.++.+--.++...|-.+-+-+|..+.
T Consensus       397 ~LA~~l~~d~~l~~~~-~~Q~van~lnalsKWPd~~~C~~aa~~lA~~la~d~~l~~~~~p~~va~~LnalSKWPd~p~c  475 (2710)
T PRK14707        397 ALAEHVVDDLELRKGL-DPQGVSNALNALAKWPDLPICGQAVSALAGRLAHDTELCKALDPINVTQALDALSKWPDTPIC  475 (2710)
T ss_pred             HHHHHhccChhhhhhc-chhhHHHHHHHhhcCCcchhHHHHHHHHHHHHhccHHHHhhcChHHHHHHHHHhhcCCCChhH
Confidence            6655544455554444 444555555555543377777777777776666667766655545555555555566788888


Q ss_pred             HHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHH-HHHHHHHHhhhhhhccCCCCccchHHHHHHhh
Q 011328          345 KEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCL-EGLENILKAGEAEKNMGNTGGVNLFAQAIDDA  423 (488)
Q Consensus       345 ~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al-~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~  423 (488)
                      ..++..|..-... +++..+.|--.++...|-.+-+.++......++ ++-..+. ....            ....|...
T Consensus       476 ~~aa~~La~~l~~-~~~l~~a~~~q~~~~~L~aLSK~Pd~~~c~~A~~~lA~rl~-~~~~------------l~~~~~~~  541 (2710)
T PRK14707        476 GQTASALAARLAH-ERRLRKALKPQEVVIALHSLSKWPDTPICAEAASALAERVV-DELQ------------LRKAFDAH  541 (2710)
T ss_pred             HHHHHHHHHHhcc-cHHHHhhcCHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHhc-cchh------------hhhhhhhH
Confidence            8777777665543 345555555556666676777777755333333 2222332 1111            24445555


Q ss_pred             ccHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCC
Q 011328          424 EGLEKIENLQSHDNTEIYEKAVKILETYWVEEDEDEPLPPGDATQAGFGFAGNGLPVPSGGF  485 (488)
Q Consensus       424 g~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  485 (488)
                      +....+..+...++...-..+..-|...+..+           ++..=.|++|+++.--|.|
T Consensus       542 ~~~~~lnalSKwp~s~~C~~A~~~iA~~l~~~-----------~~~~~~L~aq~Vs~llNaL  592 (2710)
T PRK14707        542 QVVNTLKALSKWPDKQLCAVAASGLAERLADE-----------PQLPKDLHRQGVVIVLNAL  592 (2710)
T ss_pred             HHHHHHHhhhcCCchhHHHHHHHHHHHHhhcc-----------hhhHHhhhhhHHHHHHHhh
Confidence            55666777776665554444443443333211           2233456677766554444

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=96.76  E-value=0.0066  Score=46.50  Aligned_cols=70  Identities=19%  Similarity=0.330  Sum_probs=57.1

Q ss_pred             ChHHHHhhcC-CCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHH
Q 011328          371 CIKPLCDLLN-CPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILE  449 (488)
Q Consensus       371 ~i~~L~~ll~-~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~~~~~v~~~a~~~l~  449 (488)
                      ++..|+++|. +.|+.+...|+.-|+.+++.-+..            +..+.+.|+-+.+.+|++++|++|+..|...+.
T Consensus        44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~g------------r~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQ  111 (119)
T PF11698_consen   44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNG------------RNIIEKLGAKERVMELMNHEDPEVRYEALLAVQ  111 (119)
T ss_dssp             HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGG------------HHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHccCCCcceeehhhcchHHHHHHChhH------------HHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHH
Confidence            4778888884 457778888999999999887643            777899999999999999999999999999988


Q ss_pred             Hhc
Q 011328          450 TYW  452 (488)
Q Consensus       450 ~~~  452 (488)
                      .+.
T Consensus       112 klm  114 (119)
T PF11698_consen  112 KLM  114 (119)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            764

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=96.71  E-value=0.025  Score=59.36  Aligned_cols=160  Identities=21%  Similarity=0.262  Sum_probs=124.0

Q ss_pred             CCHHHHHHhhcC----CCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhC-CCCHHHHHHHHHHHhhhhCCC
Q 011328           73 GVVPRFIEFLSR----DDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLS-SPTDDVREQAVWALGNVAGDS  147 (488)
Q Consensus        73 ~~i~~L~~lL~~----~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~-~~~~~v~~~a~~~L~~l~~~~  147 (488)
                      .+.|.+++..+.    ++ |++|..|.-+|+.+..-+.+....     -++.|+..+. ++++.+|.++.-+++.++..-
T Consensus       919 ~f~piv~e~c~n~~~~sd-p~Lq~AAtLaL~klM~iSa~fces-----~l~llftimeksp~p~IRsN~VvalgDlav~f  992 (1251)
T KOG0414|consen  919 RFAPIVVEGCRNPGLFSD-PELQAAATLALGKLMCISAEFCES-----HLPLLFTIMEKSPSPRIRSNLVVALGDLAVRF  992 (1251)
T ss_pred             HHHHHHHHHhcCCCcCCC-HHHHHHHHHHHHHHhhhhHHHHHH-----HHHHHHHHHhcCCCceeeecchheccchhhhc
Confidence            467777788743    45 899999999999998866555443     3799999998 699999999999999998766


Q ss_pred             chhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHh
Q 011328          148 PKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYL  227 (488)
Q Consensus       148 ~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l  227 (488)
                      |...+.     ..+.+...| .+.++.+++.|+.+|++|..++    .+.+.|.++.+..++.+++..++.-|=.....+
T Consensus       993 pnlie~-----~T~~Ly~rL-~D~~~~vRkta~lvlshLILnd----miKVKGql~eMA~cl~D~~~~IsdlAk~FF~El 1062 (1251)
T KOG0414|consen  993 PNLIEP-----WTEHLYRRL-RDESPSVRKTALLVLSHLILND----MIKVKGQLSEMALCLEDPNAEISDLAKSFFKEL 1062 (1251)
T ss_pred             ccccch-----hhHHHHHHh-cCccHHHHHHHHHHHHHHHHhh----hhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHh
Confidence            653332     345677788 8889999999999999998654    566789999999999999999998888788877


Q ss_pred             ccCCchhHHHHHHhCCHHHHHHhcCCC
Q 011328          228 SDGTNDKIQAVIEAGVCPRLVELLRHP  254 (488)
Q Consensus       228 ~~~~~~~~~~~~~~~~l~~L~~lL~~~  254 (488)
                      +.... .   +.  +++|-++..|.+.
T Consensus      1063 s~k~n-~---iy--nlLPdil~~Ls~~ 1083 (1251)
T KOG0414|consen 1063 SSKGN-T---IY--NLLPDILSRLSNG 1083 (1251)
T ss_pred             hhccc-c---hh--hhchHHHHhhccC
Confidence            76542 1   21  4566666666554

>KOG2956 consensus CLIP-associating protein [General function prediction only]

Probab=96.67  E-value=0.098  Score=49.60  Aligned_cols=174  Identities=11%  Similarity=0.120  Sum_probs=112.2

Q ss_pred             cHhHHHHHHHHHH-HhhcCCCCCChhhhhchHHHHHHhhcc-CChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHH
Q 011328          172 KLSMLRNATWTLS-NFCRGKPQPLFEQTRPALPALERLIHS-NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVE  249 (488)
Q Consensus       172 ~~~v~~~a~~~L~-~l~~~~~~~~~~~~~~~~~~l~~ll~~-~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~  249 (488)
                      ..+-+..|+.-|. -++.+....+......++..+++.+.+ .+...+..|++.|..++.+.+.....-.+ -.+..+++
T Consensus       300 ~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE-~ai~K~Le  378 (516)
T KOG2956|consen  300 RASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTE-IAICKVLE  378 (516)
T ss_pred             chhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHH-HHHHHHHH
Confidence            3344555665444 444444455555667778888888887 68889999999999999887654332222 23445555


Q ss_pred             hcCCCCcchHhHHHH-HHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcC-CHHHHHHHHHcC
Q 011328          250 LLRHPSPSVLIPALR-TVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG-NVNQIQAIIEAG  327 (488)
Q Consensus       250 lL~~~~~~v~~~a~~-~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~  327 (488)
                      .-.+..+.+...|.. ++..++.+.+...        +..+..++.+. +...-..++..+..+... +.+....++. .
T Consensus       379 aa~ds~~~v~~~Aeed~~~~las~~P~~~--------I~~i~~~Ilt~-D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~-d  448 (516)
T KOG2956|consen  379 AAKDSQDEVMRVAEEDCLTTLASHLPLQC--------IVNISPLILTA-DEPRAVAVIKMLTKLFERLSAEELLNLLP-D  448 (516)
T ss_pred             HHhCCchhHHHHHHHHHHHHHHhhCchhH--------HHHHhhHHhcC-cchHHHHHHHHHHHHHhhcCHHHHHHhhh-h
Confidence            555555555554444 4545555555332        33455555555 555556666677777763 3444444443 5


Q ss_pred             ChHHHHHHHhcCChhHHHHHHHHHHHhcc
Q 011328          328 IIGPLVNLLLNAEFEIKKEAAWAISNATS  356 (488)
Q Consensus       328 ~l~~L~~ll~~~~~~v~~~a~~aL~~l~~  356 (488)
                      +.|.+++...+.+..||+.|..+|..+..
T Consensus       449 iaP~~iqay~S~SS~VRKtaVfCLVamv~  477 (516)
T KOG2956|consen  449 IAPCVIQAYDSTSSTVRKTAVFCLVAMVN  477 (516)
T ss_pred             hhhHHHHHhcCchHHhhhhHHHhHHHHHH
Confidence            99999999999999999999999998864

>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4

Probab=96.67  E-value=0.87  Score=47.67  Aligned_cols=210  Identities=14%  Similarity=0.179  Sum_probs=125.9

Q ss_pred             hCCCHHHHHHhhCC-----CCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhc---cccc----HhHHHHHHH
Q 011328          114 DHGAVPIFVRLLSS-----PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN---EHAK----LSMLRNATW  181 (488)
Q Consensus       114 ~~g~i~~L~~~L~~-----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~---~~~~----~~v~~~a~~  181 (488)
                      +.|++..++..+.+     ....+....+..|...+.- +.+|+.+.+.++++.|+..+.   ....    ..+.+..+.
T Consensus       115 ~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv-~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~  193 (802)
T PF13764_consen  115 ECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKV-KVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLE  193 (802)
T ss_pred             cCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhh-HHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHH
Confidence            56889999998876     3345666667777666655 567899999999999998884   2222    456666666


Q ss_pred             HHHHhhcCCCCCCh--------h-----hhhchHHHHHHhhcc----CChhHHHHHHHHHHHhccCCchhHHHHHHhCCH
Q 011328          182 TLSNFCRGKPQPLF--------E-----QTRPALPALERLIHS----NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVC  244 (488)
Q Consensus       182 ~L~~l~~~~~~~~~--------~-----~~~~~~~~l~~ll~~----~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l  244 (488)
                      .+..+.........        .     ....-+..+++.+.+    .++.+....+++|-+++....+.++.+++.  +
T Consensus       194 IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~--F  271 (802)
T PF13764_consen  194 IIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH--F  271 (802)
T ss_pred             HHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH--H
Confidence            66555433211111        0     123345566666654    468999999999999999988887766642  2


Q ss_pred             HHHHHh--cCCCCcchHhHHHHHHhHhhcCC------chhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCC
Q 011328          245 PRLVEL--LRHPSPSVLIPALRTVGNIVTGD------DMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGN  316 (488)
Q Consensus       245 ~~L~~l--L~~~~~~v~~~a~~~L~~l~~~~------~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~  316 (488)
                      ...+++  ++.....--..-+.+++.++.+-      ...+..+++.|++...++.|... .+..           ....
T Consensus       272 ~p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~-~P~~-----------~~~~  339 (802)
T PF13764_consen  272 KPYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKH-FPSL-----------KNTD  339 (802)
T ss_pred             HHhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHh-Cccc-----------ccCC
Confidence            222221  11111111123355555555432      23456677888888888877655 3332           1112


Q ss_pred             HHHHHHHHHcCChHHHHHHHhc
Q 011328          317 VNQIQAIIEAGIIGPLVNLLLN  338 (488)
Q Consensus       317 ~~~~~~l~~~~~l~~L~~ll~~  338 (488)
                      .+.....+....+|..+++|..
T Consensus       340 s~eWk~~l~~psLp~iL~lL~G  361 (802)
T PF13764_consen  340 SPEWKEFLSRPSLPYILRLLRG  361 (802)
T ss_pred             CHHHHHHhcCCcHHHHHHHHHH
Confidence            3445556666677777666653

>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]

Probab=96.66  E-value=0.38  Score=41.73  Aligned_cols=139  Identities=10%  Similarity=0.134  Sum_probs=100.8

Q ss_pred             HhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcc----cchhhHHHHHHHHHHHHhc-CCHHHHHHHHHcCChHHHH
Q 011328          259 LIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQ----NYKKSIKKEACWTISNITA-GNVNQIQAIIEAGIIGPLV  333 (488)
Q Consensus       259 ~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~----~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~l~~L~  333 (488)
                      .-.|+..+..+++ .++.+..+++..+--.+..+|..    ...+-+|..++++++.+.. ++.+.+..+...+++|..+
T Consensus        96 VcnaL~LlQcvAS-HpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCL  174 (293)
T KOG3036|consen   96 VCNALALLQCVAS-HPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCL  174 (293)
T ss_pred             HHHHHHHHHHHhc-CcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHH
Confidence            3456666666666 45566777787777777777743    3366789999999999998 5677888888999999999


Q ss_pred             HHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHH---------CCChHHHHhhcCCCCHHHHHHHHHHHHHHHHh
Q 011328          334 NLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVS---------QGCIKPLCDLLNCPDPRIVTVCLEGLENILKA  400 (488)
Q Consensus       334 ~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~---------~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~  400 (488)
                      +.+..++..-|..|...+..+....  ....++++         .-+-+.+.++.+.+++.+..+++.+..++...
T Consensus       175 rime~GSelSKtvA~fIlqKIlldD--~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdn  248 (293)
T KOG3036|consen  175 RIMESGSELSKTVATFILQKILLDD--VGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDN  248 (293)
T ss_pred             HHHhcccHHHHHHHHHHHHHHhhcc--ccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCC
Confidence            9999999999999999999998654  22333222         11123344456677888888888887777543

>KOG2956 consensus CLIP-associating protein [General function prediction only]

Probab=96.51  E-value=0.14  Score=48.54  Aligned_cols=176  Identities=14%  Similarity=0.176  Sum_probs=113.2

Q ss_pred             CHHHHHHHHH-HHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHH
Q 011328          129 TDDVREQAVW-ALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALER  207 (488)
Q Consensus       129 ~~~v~~~a~~-~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~  207 (488)
                      ..+-+..|+. ...-++.++-...+... ..++..+++.|.++.+...+.-|+..|..++.+.+..-.....-++..+++
T Consensus       300 ~a~~~k~alsel~~m~~e~sfsvWeq~f-~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Le  378 (516)
T KOG2956|consen  300 RASERKEALSELPKMLCEGSFSVWEQHF-AEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLE  378 (516)
T ss_pred             chhHHHHHHHHHHHHHHccchhHHHHHH-HHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHH
Confidence            4455566665 44444555433322211 124567778886668889999999999999998866655555666667777


Q ss_pred             hhccCChhHHHHHHHH-HHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCCh
Q 011328          208 LIHSNDDEVLTDACWA-LSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQAL  286 (488)
Q Consensus       208 ll~~~~~~v~~~al~~-L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~  286 (488)
                      .-.+.++++...|... +.-++...+...        +..+..++...++.....++..+..++..-....-..+-..+.
T Consensus       379 aa~ds~~~v~~~Aeed~~~~las~~P~~~--------I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~dia  450 (516)
T KOG2956|consen  379 AAKDSQDEVMRVAEEDCLTTLASHLPLQC--------IVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLLPDIA  450 (516)
T ss_pred             HHhCCchhHHHHHHHHHHHHHHhhCchhH--------HHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhh
Confidence            6666666665554444 444555554321        2333344444666667777778888776443322222334788


Q ss_pred             HHHHHHhcccchhhHHHHHHHHHHHHhc
Q 011328          287 PCLLDLLTQNYKKSIKKEACWTISNITA  314 (488)
Q Consensus       287 ~~L~~lL~~~~~~~v~~~a~~~L~nl~~  314 (488)
                      |.+++..++. +..||+.|+++|..+..
T Consensus       451 P~~iqay~S~-SS~VRKtaVfCLVamv~  477 (516)
T KOG2956|consen  451 PCVIQAYDST-SSTVRKTAVFCLVAMVN  477 (516)
T ss_pred             hHHHHHhcCc-hHHhhhhHHHhHHHHHH
Confidence            9999999999 99999999999998865

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []

Probab=96.49  E-value=0.23  Score=43.84  Aligned_cols=201  Identities=13%  Similarity=0.054  Sum_probs=119.7

Q ss_pred             CcchHhHHHHHHhHhhcCCchhhHHHh-hCCChHHHHHHhcccc--------hhhHH---HHHHHHHHHHhcCCHHHHHH
Q 011328          255 SPSVLIPALRTVGNIVTGDDMQTQCII-NHQALPCLLDLLTQNY--------KKSIK---KEACWTISNITAGNVNQIQA  322 (488)
Q Consensus       255 ~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~~~~L~~lL~~~~--------~~~v~---~~a~~~L~nl~~~~~~~~~~  322 (488)
                      +++.|+.|+.-|+.--...+...-.+. ..|.+..+++=+-+.+        ....-   ..|+..+..++++ ++.+..
T Consensus         8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAsh-petr~~   86 (262)
T PF04078_consen    8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASH-PETRMP   86 (262)
T ss_dssp             SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH--TTTHHH
T ss_pred             CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcC-hHHHHH
Confidence            355677776666654443333333333 2344444433221110        11112   2333344445554 888889


Q ss_pred             HHHcCChHHHHHHHhcC-----ChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHH
Q 011328          323 IIEAGIIGPLVNLLLNA-----EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENI  397 (488)
Q Consensus       323 l~~~~~l~~L~~ll~~~-----~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l  397 (488)
                      +++..+.-.|..+++..     -+.+|..++.+++.++...+++...++.+.+.++...+.++.+++-.+..|...+.++
T Consensus        87 Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKI  166 (262)
T PF04078_consen   87 FLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKI  166 (262)
T ss_dssp             HHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred             HHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            99988877777777654     3568999999999999999999999999999999999999999888888899999999


Q ss_pred             HHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCCCC
Q 011328          398 LKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVEEDEDEP  460 (488)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~~~~~~  460 (488)
                      +..+.-.....+.  ...|.....-.  -.-+..+...+++++-+...++..++.+..+-.++
T Consensus       167 L~dd~GL~yiC~t--~eRf~av~~vL--~~mV~~l~~~pS~RLLKhIIrCYlRLsdnprar~a  225 (262)
T PF04078_consen  167 LLDDVGLNYICQT--AERFFAVAMVL--NKMVEQLVKQPSPRLLKHIIRCYLRLSDNPRAREA  225 (262)
T ss_dssp             HHSHHHHHHHTSS--HHHHHHHHHHH--HHHHHHHHHS--HHHHHHHHHHHHHHTTSTTHHHH
T ss_pred             HcchhHHHHHhcC--HHHHHHHHHHH--HHHHHHHccCCChhHHHHHHHHHHHHccCHHHHHH
Confidence            8655433221111  11122211111  12234556778888887777777777665544333

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.

>KOG1949 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.49  E-value=0.93  Score=45.51  Aligned_cols=187  Identities=14%  Similarity=0.095  Sum_probs=122.0

Q ss_pred             HHHHHHhhcCCCChhHHHHHHHHHHHhcC-CCc----hhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCch
Q 011328           75 VPRFIEFLSRDDFPQLQFEAAWALTNIAS-GTS----ENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK  149 (488)
Q Consensus        75 i~~L~~lL~~~~~~~v~~~a~~~L~~l~~-~~~----~~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~  149 (488)
                      =|.|.+-|+-.+ ..+|..|+..+.+.-- .+|    +..+.+++.. ...+-.+|+++.+.+|..|...++.+...   
T Consensus       176 ~p~l~R~L~a~N-s~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQ-f~~l~~LL~d~~p~VRS~a~~gv~k~~s~---  250 (1005)
T KOG1949|consen  176 KPILWRGLKARN-SEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQ-FEELYSLLEDPYPMVRSTAILGVCKITSK---  250 (1005)
T ss_pred             hHHHHHhhccCc-hhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHH-HHHHHHHhcCCCchHHHHHHHHHHHHHHH---
Confidence            344556677788 7999999999998764 233    2344455433 67888899999999999998877776532   


Q ss_pred             hHHHHHh---cCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHH
Q 011328          150 CRDLVLS---NGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSY  226 (488)
Q Consensus       150 ~~~~~~~---~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~  226 (488)
                      +...+-.   ...+..++.-+..++..+|+......|..+..++  ........++|.+-..+.+....|+..+...|..
T Consensus       251 fWe~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np--~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~  328 (1005)
T KOG1949|consen  251 FWEMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNP--LSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLK  328 (1005)
T ss_pred             HHHHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCc--cchhHHHHHHHhcchhhhccchhHHHHHHHHHHH
Confidence            1111111   1133444444555667788989999888888764  3334445677777788888899999999888887


Q ss_pred             hccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhc
Q 011328          227 LSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVT  271 (488)
Q Consensus       227 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~  271 (488)
                      +-....   -.+.+-=-++.++..|..++..+.+..+..|.+.+.
T Consensus       329 ik~vra---~~f~~I~~~d~~l~~L~~d~~~v~rr~~~li~~s~l  370 (1005)
T KOG1949|consen  329 IKAVRA---AKFWKICPMDHILVRLETDSRPVSRRLVSLIFNSFL  370 (1005)
T ss_pred             HHhhhh---hhhhccccHHHHHHHHhccccHHHHHHHHHHHHhhc
Confidence            643321   223322334556666766666666666666655543

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=96.48  E-value=0.0068  Score=46.44  Aligned_cols=73  Identities=21%  Similarity=0.246  Sum_probs=61.0

Q ss_pred             CChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhcc
Q 011328          284 QALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS  356 (488)
Q Consensus       284 ~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~  356 (488)
                      .++..|+++|..+.++.+..-||.-|+.++...|..+..+-+.|+-..+++++.++|++||.+|+.|+..+..
T Consensus        43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~  115 (119)
T PF11698_consen   43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV  115 (119)
T ss_dssp             HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            4678899999655588888899999999999767777777788999999999999999999999999988764

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=96.45  E-value=0.14  Score=51.11  Aligned_cols=256  Identities=13%  Similarity=0.154  Sum_probs=164.2

Q ss_pred             HHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCC-ChhHHHHHHHHHHHhcCCCchhhHHHHh
Q 011328           36 VAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDD-FPQLQFEAAWALTNIASGTSENTRVVID  114 (488)
Q Consensus        36 ~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~  114 (488)
                      ++.+.-.+.+.+..=..-|.+.+..    ....++...+++.|+..+.-++ ..++. ..+..++.... ..+     .+
T Consensus       260 Leel~lks~~eK~~Ff~~L~~~l~~----~pe~i~~~kvlp~Ll~~~~~g~a~~~~l-tpl~k~~k~ld-~~e-----yq  328 (690)
T KOG1243|consen  260 LEELRLKSVEEKQKFFSGLIDRLDN----FPEEIIASKVLPILLAALEFGDAASDFL-TPLFKLGKDLD-EEE-----YQ  328 (690)
T ss_pred             HHhcccCcHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHhhccccchhhh-hHHHHhhhhcc-ccc-----cc
Confidence            3444445555555444455443322    2344555667777777666544 12222 22222333332 222     56


Q ss_pred             CCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCC
Q 011328          115 HGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPL  194 (488)
Q Consensus       115 ~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~  194 (488)
                      .+++|.|+++++..+..+|-..+.-+-.+...   ..+.+++..+++.+...+ .++++.+++..+.++..++..-... 
T Consensus       329 ~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~---Lt~~~~~d~I~phv~~G~-~DTn~~Lre~Tlksm~~La~kL~~~-  403 (690)
T KOG1243|consen  329 VRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDH---LTKQILNDQIFPHVALGF-LDTNATLREQTLKSMAVLAPKLSKR-  403 (690)
T ss_pred             cchhhhHHHHhcCcchHHHHHHHHhHHHHhhh---cCHHhhcchhHHHHHhhc-ccCCHHHHHHHHHHHHHHHhhhchh-
Confidence            67899999999999999998877666666544   344566777888888888 8899999999999998887643111 


Q ss_pred             hhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCc
Q 011328          195 FEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDD  274 (488)
Q Consensus       195 ~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~  274 (488)
                       ......+..+.++-.+.+..++....-|++.++......   ..+.-....+...++++-..-|..+...++......+
T Consensus       404 -~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~---~R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~  479 (690)
T KOG1243|consen  404 -NLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAAS---VRKRVLASAFTRALKDPFVPARKAGVLALAATQEYFD  479 (690)
T ss_pred             -hhcHHHHHHHHhhCccccCcccccceeeecccccccchh---hhccccchhhhhhhcCCCCCchhhhhHHHhhcccccc
Confidence             233455556665555667888998888888887664322   1222233445556777777888888888876655433


Q ss_pred             hhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcC
Q 011328          275 MQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG  315 (488)
Q Consensus       275 ~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~  315 (488)
                      .   .-+...+++.+..+..++ +..+|..|..++..+-..
T Consensus       480 ~---~~va~kIlp~l~pl~vd~-e~~vr~~a~~~i~~fl~k  516 (690)
T KOG1243|consen  480 Q---SEVANKILPSLVPLTVDP-EKTVRDTAEKAIRQFLEK  516 (690)
T ss_pred             h---hhhhhhccccccccccCc-ccchhhHHHHHHHHHHhh
Confidence            2   223457888888888888 888998888888766543

>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised

Probab=96.37  E-value=1.2  Score=44.19  Aligned_cols=254  Identities=13%  Similarity=0.074  Sum_probs=138.9

Q ss_pred             CCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHH
Q 011328           42 DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIF  121 (488)
Q Consensus        42 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L  121 (488)
                      ...+.|..+...|..++.... .... ....    .+.+.+..+..++.-..-+.+|..++.+..+.  ...+.++.+.|
T Consensus        41 ~p~e~R~~~~~ll~~~i~~~~-~~~~-~~R~----~fF~~I~~~~~~~d~~~~l~aL~~LT~~Grdi--~~~~~~i~~~L  112 (464)
T PF11864_consen   41 QPSEARRAALELLIACIKRQD-SSSG-LMRA----EFFRDISDPSNDDDFDLRLEALIALTDNGRDI--DFFEYEIGPFL  112 (464)
T ss_pred             CCHHHHHHHHHHHHHHHHccc-cccH-HHHH----HHHHHHhcCCCchhHHHHHHHHHHHHcCCcCc--hhcccchHHHH
Confidence            346788899999998887652 2111 1121    22233333322333334455666666644333  23567788888


Q ss_pred             HHhhCCC---------------------------CHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHh
Q 011328          122 VRLLSSP---------------------------TDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLS  174 (488)
Q Consensus       122 ~~~L~~~---------------------------~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~  174 (488)
                      ...+..-                           +.......+..+.++...+...-+.-.-.+.+..++.+..+.+++.
T Consensus       113 ~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~  192 (464)
T PF11864_consen  113 LSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSED  192 (464)
T ss_pred             HHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHH
Confidence            8777421                           1222334455555655444322111111234555666654555555


Q ss_pred             HHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCC-
Q 011328          175 MLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH-  253 (488)
Q Consensus       175 v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-  253 (488)
                      ....++..+-.+.... .........++..|......  .+....+..++.|++......       ..+..|..+|.+ 
T Consensus       193 di~~~L~vldaii~y~-~iP~~sl~~~i~vLCsi~~~--~~l~~~~w~~m~nL~~S~~g~-------~~i~~L~~iL~~~  262 (464)
T PF11864_consen  193 DIEACLSVLDAIITYG-DIPSESLSPCIEVLCSIVNS--VSLCKPSWRTMRNLLKSHLGH-------SAIRTLCDILRSP  262 (464)
T ss_pred             HHHHHHHHHHHHHHcC-cCChHHHHHHHHHHhhHhcc--cccchhHHHHHHHHHcCccHH-------HHHHHHHHHHccc
Confidence            5566666666665543 12222334444444444322  266677788888888654322       345667777732 


Q ss_pred             -----CCcchHhHHHHHHhHhhcCCchhhHHHhh-C--CChHHHHHHhcccchhhHHHHHHHHHHHHhc
Q 011328          254 -----PSPSVLIPALRTVGNIVTGDDMQTQCIIN-H--QALPCLLDLLTQNYKKSIKKEACWTISNITA  314 (488)
Q Consensus       254 -----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~--~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~  314 (488)
                           .+..+.+-|+..+..+..+..+....-+. .  -+++.+...++.. +..+-.+.+..+.++..
T Consensus       263 ~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~-~~~v~~eIl~~i~~ll~  330 (464)
T PF11864_consen  263 DPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSN-SPRVDYEILLLINRLLD  330 (464)
T ss_pred             CccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCC-CCeehHHHHHHHHHHHh
Confidence                 23455667888888887765332222221 1  2678888888877 67777777777777763

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=96.34  E-value=0.025  Score=46.72  Aligned_cols=147  Identities=18%  Similarity=0.142  Sum_probs=96.6

Q ss_pred             ChHHHHHHhcc-cchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHH
Q 011328          285 ALPCLLDLLTQ-NYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQI  363 (488)
Q Consensus       285 ~~~~L~~lL~~-~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~  363 (488)
                      -++.++..|.. +..+++|..+.-++..+...   ..... ...+-+.+-..+..++.+-...+..++..+.... ++..
T Consensus         4 ~l~~lL~~L~~~~~~~~~r~~a~v~l~k~l~~---~~~~~-~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~-~dv~   78 (157)
T PF11701_consen    4 ELDTLLTSLDMLRQPEEVRSHALVILSKLLDA---AREEF-KEKISDFIESLLDEGEMDSLIIAFSALTALFPGP-PDVG   78 (157)
T ss_dssp             CCCHHHHHHHCTTTSCCHHHHHHHHHHHHHHH---HHHHH-HHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTT-HHHH
T ss_pred             HHHHHHHHhcccCCCHhHHHHHHHHHHHHHHH---hHHHH-HHHHHHHHHHHHccccchhHHHHHHHHHHHhCCC-HHHH
Confidence            34555665554 43778999999999988522   12222 2223334444555555667778899999887654 5555


Q ss_pred             HHH-HHCCChHHHHhhcC--CCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhh-cCCCHH
Q 011328          364 KFL-VSQGCIKPLCDLLN--CPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQ-SHDNTE  439 (488)
Q Consensus       364 ~~l-~~~~~i~~L~~ll~--~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~-~~~~~~  439 (488)
                      ..+ ...|.++.+..+..  .++..+...++++|..-+....              ++.+....+++.|.++. +++++.
T Consensus        79 ~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~--------------~r~~I~~~~~~~L~~~~~~~~~~~  144 (157)
T PF11701_consen   79 SELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKS--------------CRTFISKNYVSWLKELYKNSKDDS  144 (157)
T ss_dssp             HHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHH--------------HHHCCHHHCHHHHHHHTTTCC-HH
T ss_pred             HHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHH--------------HHHHHHHHHHHHHHHHHccccchH
Confidence            554 56788999999988  7788888888888875554433              44444566789999998 566666


Q ss_pred             -HHHHHHHHHHH
Q 011328          440 -IYEKAVKILET  450 (488)
Q Consensus       440 -v~~~a~~~l~~  450 (488)
                       ++-+|.-.|.+
T Consensus       145 ~ir~~A~v~L~K  156 (157)
T PF11701_consen  145 EIRVLAAVGLCK  156 (157)
T ss_dssp             -CHHHHHHHHHH
T ss_pred             HHHHHHHHHHhc
Confidence             78888877765

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=96.31  E-value=0.33  Score=48.60  Aligned_cols=193  Identities=12%  Similarity=0.140  Sum_probs=137.3

Q ss_pred             hhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchh
Q 011328          197 QTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQ  276 (488)
Q Consensus       197 ~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~  276 (488)
                      ....++|.++++++..|..+|...+.-+-.....-.   +.+++..+++.+...+.+.++.+|+..+.++..++..-...
T Consensus       327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt---~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~  403 (690)
T KOG1243|consen  327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLT---KQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKR  403 (690)
T ss_pred             cccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhcC---HHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchh
Confidence            567899999999999999999988888777765543   44777789999999999999999999999999888643222


Q ss_pred             hHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCC-HHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhc
Q 011328          277 TQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGN-VNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNAT  355 (488)
Q Consensus       277 ~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~-~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~  355 (488)
                         .+....+..+-+.-.+. +..+|....-+++.++... +..++    .-....+.+.+.++-..-|..+.+++....
T Consensus       404 ---~Ln~Ellr~~ar~q~d~-~~~irtntticlgki~~~l~~~~R~----~vL~~aftralkdpf~paR~a~v~~l~at~  475 (690)
T KOG1243|consen  404 ---NLNGELLRYLARLQPDE-HGGIRTNTTICLGKIAPHLAASVRK----RVLASAFTRALKDPFVPARKAGVLALAATQ  475 (690)
T ss_pred             ---hhcHHHHHHHHhhCccc-cCcccccceeeecccccccchhhhc----cccchhhhhhhcCCCCCchhhhhHHHhhcc
Confidence               23334444444444433 7788888888888887642 22222    223445555667776677888888877765


Q ss_pred             cCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhh
Q 011328          356 SGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAE  404 (488)
Q Consensus       356 ~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~  404 (488)
                      ..-+...    +...+++.+.-+.-+++..++..+..++.......++.
T Consensus       476 ~~~~~~~----va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~kl~~~  520 (690)
T KOG1243|consen  476 EYFDQSE----VANKILPSLVPLTVDPEKTVRDTAEKAIRQFLEKLEKV  520 (690)
T ss_pred             cccchhh----hhhhccccccccccCcccchhhHHHHHHHHHHhhhhhh
Confidence            4332211    23357888888888888899999999988887766554

>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D

Probab=96.31  E-value=0.33  Score=46.27  Aligned_cols=275  Identities=19%  Similarity=0.178  Sum_probs=140.5

Q ss_pred             HHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCC-CCHHHHHHH-HHHHhhhhCCCchhHH
Q 011328           75 VPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS-PTDDVREQA-VWALGNVAGDSPKCRD  152 (488)
Q Consensus        75 i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~-~~~~v~~~a-~~~L~~l~~~~~~~~~  152 (488)
                      +..++.-+.+.....+|..++--|+.-+. +++.+..+..+|....+++.+.. ++..+...+ +.++.-++.+.. ...
T Consensus        23 v~ylld~l~~~~~~s~Rr~sll~La~K~~-~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~-~~~  100 (361)
T PF07814_consen   23 VEYLLDGLESSSSSSVRRSSLLELASKCA-DPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGL-NMH  100 (361)
T ss_pred             HHHHHhhcccCCCccHHHHHHHHHHHHhC-CHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCc-chh
Confidence            55666667755547889999888888888 89999999999999999999955 333244444 344444444443 233


Q ss_pred             HHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhc---------cCChhHHHHHHHH
Q 011328          153 LVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH---------SNDDEVLTDACWA  223 (488)
Q Consensus       153 ~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~---------~~~~~v~~~al~~  223 (488)
                      .+........+++++.-.....+.....      .. ....-.......+..+.+.+.         .....-+..++.+
T Consensus       101 l~~~~~~~~ll~~Ll~~~~~~~~~~~~~------~~-~~~~lsk~~~~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall~  173 (361)
T PF07814_consen  101 LLLDRDSLRLLLKLLKVDKSLDVPSDSD------SS-RKKNLSKVQQKSRSLCKELLSSGSSWKSPKPPELSPQTLALLA  173 (361)
T ss_pred             hhhchhHHHHHHHHhccccccccccchh------hh-hhhhhhHHHHHHHHHHHHHHhccccccccCCcccccccHHHHH
Confidence            3334444555566663000000000000      00 000000000111111112210         1112223334444


Q ss_pred             HHHhc--------------cCCchhHHHHHHhCCHHHHHHhcC----CC-------Cc-----chHhHHHHHHhHhhcCC
Q 011328          224 LSYLS--------------DGTNDKIQAVIEAGVCPRLVELLR----HP-------SP-----SVLIPALRTVGNIVTGD  273 (488)
Q Consensus       224 L~~l~--------------~~~~~~~~~~~~~~~l~~L~~lL~----~~-------~~-----~v~~~a~~~L~~l~~~~  273 (488)
                      +-.++              ...+...+.+.+.|+++.+++.+.    ..       .+     .....++++|-+.+..+
T Consensus       174 le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~~  253 (361)
T PF07814_consen  174 LESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFLS  253 (361)
T ss_pred             HHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhcC
Confidence            44332              111222344556677888888874    11       11     23455788888888766


Q ss_pred             chhhHHHhhC--CChHHHHH-Hhccc--chhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh------c----
Q 011328          274 DMQTQCIINH--QALPCLLD-LLTQN--YKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLL------N----  338 (488)
Q Consensus       274 ~~~~~~~~~~--~~~~~L~~-lL~~~--~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~------~----  338 (488)
                      ......+...  +.+..+.. .+...  ....+...+++.+.|++.++++....+...++...+..+..      .    
T Consensus       254 ~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~~l~~~~~~i~~~~~~~~~~~~~  333 (361)
T PF07814_consen  254 EENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFASPKLGQQLGLIVTSFFCVLSLPNY  333 (361)
T ss_pred             ccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhhhHhccchHHHHHhhccccccccc
Confidence            6555444422  23333332 22222  03344567888999999888777666665433322211111      1    


Q ss_pred             ----CChhHHHHHHHHHHHhccCC
Q 011328          339 ----AEFEIKKEAAWAISNATSGG  358 (488)
Q Consensus       339 ----~~~~v~~~a~~aL~~l~~~~  358 (488)
                          ...+...-++.+|.|++...
T Consensus       334 ~~~~~~~D~~IL~Lg~LINL~E~s  357 (361)
T PF07814_consen  334 VPEESSFDILILALGLLINLVEHS  357 (361)
T ss_pred             ccccccchHHHHHHHhHHHheeeC
Confidence                12355666777777777654

melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=96.21  E-value=0.044  Score=45.26  Aligned_cols=145  Identities=16%  Similarity=0.171  Sum_probs=100.7

Q ss_pred             HHHHHHhcC--CCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHH
Q 011328          244 CPRLVELLR--HPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQ  321 (488)
Q Consensus       244 l~~L~~lL~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~  321 (488)
                      ++.++..+.  ...+++|..+.-++..+..    ..+.-....+-+.+...+... +.+-...++.++..+-...++...
T Consensus         5 l~~lL~~L~~~~~~~~~r~~a~v~l~k~l~----~~~~~~~~~~~~~i~~~~~~~-~~d~~i~~~~~l~~lfp~~~dv~~   79 (157)
T PF11701_consen    5 LDTLLTSLDMLRQPEEVRSHALVILSKLLD----AAREEFKEKISDFIESLLDEG-EMDSLIIAFSALTALFPGPPDVGS   79 (157)
T ss_dssp             CCHHHHHHHCTTTSCCHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHCCH-HCCHHHHHHHHHHHHCTTTHHHHH
T ss_pred             HHHHHHHhcccCCCHhHHHHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHccc-cchhHHHHHHHHHHHhCCCHHHHH
Confidence            344555544  3567899999988888842    222222333445566666666 666788889999999888788777


Q ss_pred             HHH-HcCChHHHHHHHh--cCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCC-CCHH-HHHHHHHHHHH
Q 011328          322 AII-EAGIIGPLVNLLL--NAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNC-PDPR-IVTVCLEGLEN  396 (488)
Q Consensus       322 ~l~-~~~~l~~L~~ll~--~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~-~~~~-v~~~al~~L~~  396 (488)
                      .++ ..|+++.+..+..  .++..++..++.+|..-+..   +..+..+.+.+++.|.++++. ++.. ++..|+-+|.+
T Consensus        80 ~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d---~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K  156 (157)
T PF11701_consen   80 ELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACID---KSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK  156 (157)
T ss_dssp             HHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTS---HHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred             HHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHcc---HHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence            766 5788999999999  67888889999998887653   344455556899999999964 4455 67777766653

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>KOG1566 consensus Conserved protein Mo25 [Function unknown]

Probab=96.21  E-value=0.76  Score=41.53  Aligned_cols=202  Identities=11%  Similarity=0.126  Sum_probs=137.9

Q ss_pred             hchHHHHHHhhccCChhHHHHHHHHHHHhccCCchh----HHHHH-HhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCC
Q 011328          199 RPALPALERLIHSNDDEVLTDACWALSYLSDGTNDK----IQAVI-EAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGD  273 (488)
Q Consensus       199 ~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~----~~~~~-~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~  273 (488)
                      .+.++.++..+...+-+.+..++.+..++....-+.    .+.+. ..+++..|+..-.. .+++...+-..+....+ .
T Consensus        78 ~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~-~~~iaL~cg~mlrEcir-h  155 (342)
T KOG1566|consen   78 ADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYEN-TPEIALTCGNMLRECIR-H  155 (342)
T ss_pred             CCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhcc-chHHHHHHHHHHHHHHh-h
Confidence            577888888888888888888888888877433221    11111 12444455444211 24444444444444444 3


Q ss_pred             chhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCC---hHH-HHHHHhcCChhHHHHHHH
Q 011328          274 DMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGI---IGP-LVNLLLNAEFEIKKEAAW  349 (488)
Q Consensus       274 ~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~---l~~-L~~ll~~~~~~v~~~a~~  349 (488)
                      +...+.+....-+......++.+ ..++...|..+...+.......+..++..+.   ++. --.++.+++.-.+..+..
T Consensus       156 e~LakiiL~s~~~~~FF~~vq~p-~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkrqs~k  234 (342)
T KOG1566|consen  156 EFLAKIILESTNFEKFFLYVQLP-NFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKRQSLK  234 (342)
T ss_pred             HHHHHHHHcchhHHHHHHHHhcc-chHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHHHHHH
Confidence            45566677888888899999888 8889999999988887754555555554332   343 455777889999999999


Q ss_pred             HHHHhccCC--CHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhh
Q 011328          350 AISNATSGG--SNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEA  403 (488)
Q Consensus       350 aL~~l~~~~--~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~  403 (488)
                      +|+.+....  .....+++.+...+..++.+|.++...++-.|......+.....+
T Consensus       235 llg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnpnK  290 (342)
T KOG1566|consen  235 LLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANPNK  290 (342)
T ss_pred             hHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCCCC
Confidence            999997644  334566666667899999999999999998888877766655443

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]

Probab=96.09  E-value=0.15  Score=53.19  Aligned_cols=196  Identities=13%  Similarity=0.100  Sum_probs=136.9

Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhh
Q 011328          119 PIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQT  198 (488)
Q Consensus       119 ~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~  198 (488)
                      +.+..-+.+.+..-|..++..+........ ........+.+..++.....+.+..+...++.+|..++..-.....-..
T Consensus       256 ~~l~t~~~s~~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~  334 (815)
T KOG1820|consen  256 KNLETEMLSKKWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYA  334 (815)
T ss_pred             hHHHHhhhccchHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHH
Confidence            334444455778888888888888776544 1111112234556666666778888999999999999887655555666


Q ss_pred             hchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCc-hhh
Q 011328          199 RPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDD-MQT  277 (488)
Q Consensus       199 ~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~-~~~  277 (488)
                      ..++|.++.-+......++..+..++-.++....-       ....+.+...+.+.++.++..+...+.......+ ...
T Consensus       335 ~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~l-------~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~  407 (815)
T KOG1820|consen  335 KNVFPSLLDRLKEKKSELRDALLKALDAILNSTPL-------SKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTV  407 (815)
T ss_pred             HhhcchHHHHhhhccHHHHHHHHHHHHHHHhcccH-------HHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCc
Confidence            78889999999888888888888888776653321       1456788889999999999998777777666444 211


Q ss_pred             HHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhc-CCHHHHHHH
Q 011328          278 QCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA-GNVNQIQAI  323 (488)
Q Consensus       278 ~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l  323 (488)
                      ..-.-.+.++.++....+. +.+||..|..+++.+.. ...+....+
T Consensus       408 ~~~t~~~l~p~~~~~~~D~-~~~VR~Aa~e~~~~v~k~~Ge~~~~k~  453 (815)
T KOG1820|consen  408 EKETVKTLVPHLIKHINDT-DKDVRKAALEAVAAVMKVHGEEVFKKL  453 (815)
T ss_pred             chhhHHHHhHHHhhhccCC-cHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            1112235778888888888 89999999999988876 334444433

>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=96.09  E-value=0.29  Score=48.88  Aligned_cols=144  Identities=18%  Similarity=0.173  Sum_probs=106.5

Q ss_pred             CCHHHHHHhhcC----CCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhC-CCCHHHHHHHHHHHhhhhCCC
Q 011328           73 GVVPRFIEFLSR----DDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLS-SPTDDVREQAVWALGNVAGDS  147 (488)
Q Consensus        73 ~~i~~L~~lL~~----~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~-~~~~~v~~~a~~~L~~l~~~~  147 (488)
                      ++-|...+...+    ++ +.++..|..+|..+..-+.+....     -+|.|+..++ +++|.+|.+|.-.++.+.-.-
T Consensus       892 ~F~pvVeE~csn~~~~sd-~~lq~aA~l~L~klMClS~~fc~e-----hlpllIt~mek~p~P~IR~NaVvglgD~~vcf  965 (1128)
T COG5098         892 NFKPVVEEGCSNSSRFSD-EELQVAAYLSLYKLMCLSFEFCSE-----HLPLLITSMEKHPIPRIRANAVVGLGDFLVCF  965 (1128)
T ss_pred             hhhHHHHHHhccccccCC-HHHHHHHHHHHHHHHHHhHHHHHH-----HHHHHHHHHhhCCCcceeccceeeccccceeh
Confidence            344455555544    45 899999999998887644444332     3799999988 699999999999999886432


Q ss_pred             chhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHh
Q 011328          148 PKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYL  227 (488)
Q Consensus       148 ~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l  227 (488)
                      ....+     ..-..|.+.| .+.+..|++.++.++..+....    ...+.|-++.+..+|.++|..+...|-..+..+
T Consensus       966 N~~~d-----e~t~yLyrrL-~De~~~V~rtclmti~fLilag----q~KVKGqlg~ma~~L~deda~Isdmar~fft~~ 1035 (1128)
T COG5098         966 NTTAD-----EHTHYLYRRL-GDEDADVRRTCLMTIHFLILAG----QLKVKGQLGKMALLLTDEDAEISDMARHFFTQI 1035 (1128)
T ss_pred             hhhhH-----HHHHHHHHHh-cchhhHHHHHHHHHHHHHHHcc----ceeeccchhhhHhhccCCcchHHHHHHHHHHHH
Confidence            22211     1345677777 7788899999999999987543    244578889999999999999998888888888


Q ss_pred             ccCCc
Q 011328          228 SDGTN  232 (488)
Q Consensus       228 ~~~~~  232 (488)
                      +..+.
T Consensus      1036 a~KdN 1040 (1128)
T COG5098        1036 AKKDN 1040 (1128)
T ss_pred             Hhccc
Confidence            76543

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=96.05  E-value=0.12  Score=45.92  Aligned_cols=102  Identities=12%  Similarity=0.063  Sum_probs=86.5

Q ss_pred             hHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCC-CCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHh
Q 011328           89 QLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQF  167 (488)
Q Consensus        89 ~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll  167 (488)
                      .....|+++|.-++--.|..+..+.....++.++.+|+. ..+.++..++.+|..+..+++.....+.+.+++..++.++
T Consensus       106 ~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~ll  185 (257)
T PF08045_consen  106 SLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLL  185 (257)
T ss_pred             HHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHH
Confidence            345668889988888889999999999999999999954 6799999999999999999998889999999999999999


Q ss_pred             cc-cccHhHHHHHHHHHHHhhcCC
Q 011328          168 NE-HAKLSMLRNATWTLSNFCRGK  190 (488)
Q Consensus       168 ~~-~~~~~v~~~a~~~L~~l~~~~  190 (488)
                      +. +.+.+++-.++..|.-.....
T Consensus       186 k~~~~~~~~r~K~~EFL~fyl~~E  209 (257)
T PF08045_consen  186 KSKSTDRELRLKCIEFLYFYLMPE  209 (257)
T ss_pred             ccccccHHHhHHHHHHHHHHHccc
Confidence            63 347778888888877665443

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised

Probab=96.00  E-value=1.9  Score=42.88  Aligned_cols=287  Identities=13%  Similarity=0.084  Sum_probs=155.5

Q ss_pred             HHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHH
Q 011328           44 RNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVR  123 (488)
Q Consensus        44 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~  123 (488)
                      -..|..|+..+...+..-+-..+.     .+....-.++..+...+.|..++..+..+...... +.....    ..+.+
T Consensus         4 l~~R~~a~~~l~~~i~~~~~~~i~-----~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~-~~~~~R----~~fF~   73 (464)
T PF11864_consen    4 LSERIKAAEELCESIQKYPLSSIE-----EIWYAAKDLIDPNQPSEARRAALELLIACIKRQDS-SSGLMR----AEFFR   73 (464)
T ss_pred             HHHHHHHHHHHHHHHHhCCchHHH-----HHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHcccc-ccHHHH----HHHHH
Confidence            356777888888876654322222     13444456777666578999999999998874332 111111    11112


Q ss_pred             h-hCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccc--------------------------cHhHH
Q 011328          124 L-LSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHA--------------------------KLSML  176 (488)
Q Consensus       124 ~-L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~--------------------------~~~v~  176 (488)
                      . -....++--..-+.+|..|+.+..+.  ...+.+..+.+...+...-                          +....
T Consensus        74 ~I~~~~~~~d~~~~l~aL~~LT~~Grdi--~~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l  151 (464)
T PF11864_consen   74 DISDPSNDDDFDLRLEALIALTDNGRDI--DFFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNL  151 (464)
T ss_pred             HHhcCCCchhHHHHHHHHHHHHcCCcCc--hhcccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhH
Confidence            2 22234444445566777777665544  2234556666665552111                          22333


Q ss_pred             HHHHHHHHHhhcCC-CCCChhhhhchHHHHHHhhcc-CChhHHHHHHHHHHHhccCC---chhHHHHHHhCCHHHHHHhc
Q 011328          177 RNATWTLSNFCRGK-PQPLFEQTRPALPALERLIHS-NDDEVLTDACWALSYLSDGT---NDKIQAVIEAGVCPRLVELL  251 (488)
Q Consensus       177 ~~a~~~L~~l~~~~-~~~~~~~~~~~~~~l~~ll~~-~~~~v~~~al~~L~~l~~~~---~~~~~~~~~~~~l~~L~~lL  251 (488)
                      ...+..+.++.+.+ .........+.+..++.+... .+......++..+..+....   ++...     .++..|....
T Consensus       152 ~~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~sl~-----~~i~vLCsi~  226 (464)
T PF11864_consen  152 SDLLQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSESLS-----PCIEVLCSIV  226 (464)
T ss_pred             HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHHHH-----HHHHHHhhHh
Confidence            44555555555554 333334455566666655433 33444455555555544322   11111     2233333332


Q ss_pred             CCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhc--cc---chhhHHHHHHHHHHHHhcCCHHHHHHHHH-
Q 011328          252 RHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLT--QN---YKKSIKKEACWTISNITAGNVNQIQAIIE-  325 (488)
Q Consensus       252 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~--~~---~~~~v~~~a~~~L~nl~~~~~~~~~~l~~-  325 (488)
                        ...+....+-.++.||+...-..       ..+..|..+|.  ++   .+..+.+.|+..+..+..+..+....-+. 
T Consensus       227 --~~~~l~~~~w~~m~nL~~S~~g~-------~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~  297 (464)
T PF11864_consen  227 --NSVSLCKPSWRTMRNLLKSHLGH-------SAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPF  297 (464)
T ss_pred             --cccccchhHHHHHHHHHcCccHH-------HHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecc
Confidence              22367777888888888633221       24566778882  21   14556678888888887754222211111 


Q ss_pred             c--CChHHHHHHHhcCChhHHHHHHHHHHHhcc
Q 011328          326 A--GIIGPLVNLLLNAEFEIKKEAAWAISNATS  356 (488)
Q Consensus       326 ~--~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~  356 (488)
                      .  -+++.+...++.++..+-.+.+..+.++..
T Consensus       298 ~~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll~  330 (464)
T PF11864_consen  298 SPSSVLPSLLNALKSNSPRVDYEILLLINRLLD  330 (464)
T ss_pred             cHHHHHHHHHHHHhCCCCeehHHHHHHHHHHHh
Confidence            1  278888888888877777777777777763

>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism

Probab=95.97  E-value=0.11  Score=50.30  Aligned_cols=251  Identities=12%  Similarity=0.063  Sum_probs=132.4

Q ss_pred             HHHHHHHhcCCCch-hhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhccccc
Q 011328           94 AAWALTNIASGTSE-NTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAK  172 (488)
Q Consensus        94 a~~~L~~l~~~~~~-~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~  172 (488)
                      +-..|..+....+. .....+....+..|+.+++++++.-|+....+|.++-..-...|..+.. .....+.+.+.....
T Consensus       110 vY~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~-~i~~~~~~fi~e~~~  188 (409)
T PF01603_consen  110 VYEILLRFIESPPFDPAKKYIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRK-SINNIFYRFIYETER  188 (409)
T ss_dssp             HHHHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHH-HHHHHHHHHHHTTS-
T ss_pred             HHHHHHHHHHCccccHHHHHcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHH-HHHHHHHHHhcCccc
Confidence            34445555442211 1333445567889999999999999999999998886544444444432 344455666644445


Q ss_pred             HhHHHHHHHHHHHhhcCCC-CCChhhhhchHHHHHHhhccCC-hhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHh
Q 011328          173 LSMLRNATWTLSNFCRGKP-QPLFEQTRPALPALERLIHSND-DEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVEL  250 (488)
Q Consensus       173 ~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~~~l~~ll~~~~-~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~l  250 (488)
                      ..-...++..++.+..+-. ........-....++.+.+.+. .........++......++.....++     ..+++.
T Consensus       189 ~~gI~elLeil~sii~gf~~plk~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~~i-----~~llk~  263 (409)
T PF01603_consen  189 HNGIAELLEILGSIINGFAVPLKEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEPVI-----KGLLKH  263 (409)
T ss_dssp             -STHHHHHHHHHHHHTT--SS--HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHHHH-----HHHHHH
T ss_pred             ccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHH-----HHHHHh
Confidence            5556677888888877653 2223333344455556655543 22344555555555554444433222     223332


Q ss_pred             cCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHH---cC
Q 011328          251 LRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIE---AG  327 (488)
Q Consensus       251 L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~---~~  327 (488)
                      =-..++.=...-+.-+..+....+...-.-+...+...+...++++ +..|-+.|+....|=     . ...++.   ..
T Consensus       264 WP~t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~-h~qVAErAl~~w~n~-----~-~~~li~~~~~~  336 (409)
T PF01603_consen  264 WPKTNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSP-HFQVAERALYFWNNE-----Y-FLSLISQNSRV  336 (409)
T ss_dssp             S-SS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSS-SHHHHHHHHGGGGSH-----H-HHHHHHCTHHH
T ss_pred             CCCCCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHCCH-----H-HHHHHHhChHH
Confidence            2223333333344445555543322111112224566777778888 888888877554321     1 111221   12


Q ss_pred             ChHHHHHHHhc----C-ChhHHHHHHHHHHHhccC
Q 011328          328 IIGPLVNLLLN----A-EFEIKKEAAWAISNATSG  357 (488)
Q Consensus       328 ~l~~L~~ll~~----~-~~~v~~~a~~aL~~l~~~  357 (488)
                      ++|.+..-+..    . +..|+..|..++.-+...
T Consensus       337 i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~~  371 (409)
T PF01603_consen  337 ILPIIFPALYRNSKNHWNQTVRNLAQNVLKILMEM  371 (409)
T ss_dssp             HHHHHHHHHSSTTSS-SSTTHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence            56666665543    2 678999999998888764

The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=95.90  E-value=0.011  Score=33.48  Aligned_cols=30  Identities=20%  Similarity=0.282  Sum_probs=26.0

Q ss_pred             ChHHHHHHHhcCChhHHHHHHHHHHHhccC
Q 011328          328 IIGPLVNLLLNAEFEIKKEAAWAISNATSG  357 (488)
Q Consensus       328 ~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~  357 (488)
                      ++|.+++++++++++||..|+.+|+.++..
T Consensus         1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~   30 (31)
T PF02985_consen    1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH   30 (31)
T ss_dssp             HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence            378899999999999999999999999753

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=95.85  E-value=3.8  Score=45.20  Aligned_cols=143  Identities=12%  Similarity=0.095  Sum_probs=99.1

Q ss_pred             CCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHH
Q 011328           73 GVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRD  152 (488)
Q Consensus        73 ~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~  152 (488)
                      +.+..++..+..+. ..+|..|++||..+...+|....   ...+-..+-.-+.+....||+.|+..++......++...
T Consensus       816 ~yLk~Il~~l~e~~-ialRtkAlKclS~ive~Dp~vL~---~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~~~  891 (1692)
T KOG1020|consen  816 PYLKLILSVLGENA-IALRTKALKCLSMIVEADPSVLS---RPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPELIF  891 (1692)
T ss_pred             HHHHHHHHHhcCch-HHHHHHHHHHHHHHHhcChHhhc---CHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHHHH
Confidence            56777778888777 89999999999999986654322   112223333445567889999999999988766554322


Q ss_pred             HHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhc---cCChhHHHHHHHHHHHhcc
Q 011328          153 LVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH---SNDDEVLTDACWALSYLSD  229 (488)
Q Consensus       153 ~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~---~~~~~v~~~al~~L~~l~~  229 (488)
                      .     ....+.+.+ .++...||..++..+..+|...|.-.     .....+.++++   ++...++.-+..++..+.-
T Consensus       892 q-----yY~~i~erI-lDtgvsVRKRvIKIlrdic~e~pdf~-----~i~~~cakmlrRv~DEEg~I~kLv~etf~klWF  960 (1692)
T KOG1020|consen  892 Q-----YYDQIIERI-LDTGVSVRKRVIKILRDICEETPDFS-----KIVDMCAKMLRRVNDEEGNIKKLVRETFLKLWF  960 (1692)
T ss_pred             H-----HHHHHHhhc-CCCchhHHHHHHHHHHHHHHhCCChh-----hHHHHHHHHHHHhccchhHHHHHHHHHHHHHhc
Confidence            2     234555555 66788999999999999998754322     23344455554   4455689999999988874


Q ss_pred             C
Q 011328          230 G  230 (488)
Q Consensus       230 ~  230 (488)
                      .
T Consensus       961 ~  961 (1692)
T KOG1020|consen  961 T  961 (1692)
T ss_pred             c
Confidence            4

>PRK14707 hypothetical protein; Provisional

Probab=95.77  E-value=5  Score=45.96  Aligned_cols=402  Identities=11%  Similarity=0.055  Sum_probs=201.8

Q ss_pred             ccHHHHHHHhcC-CCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchh
Q 011328           30 ESLPAMVAGVWS-DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN  108 (488)
Q Consensus        30 ~~i~~l~~~L~s-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~  108 (488)
                      .++...++.|.. ++...-..++..|..-+..+ .+....+-..|+-..|-.+-+=++ ..+-..++..|..-...+.+.
T Consensus       373 q~~a~~lNalsKWp~~~~c~~aa~~LA~~l~~d-~~l~~~~~~Q~van~lnalsKWPd-~~~C~~aa~~lA~~la~d~~l  450 (2710)
T PRK14707        373 QGVSSVLNALSKWPDTPVCAAAASALAEHVVDD-LELRKGLDPQGVSNALNALAKWPD-LPICGQAVSALAGRLAHDTEL  450 (2710)
T ss_pred             hHHHHHHhhhhcCCCchHHHHHHHHHHHHhccC-hhhhhhcchhhHHHHHHHhhcCCc-chhHHHHHHHHHHHHhccHHH
Confidence            456677777775 56566666667776656544 444554444554444444444456 556666666666655557787


Q ss_pred             hHHHHhCCCHHHHHHhhCC-CC-HHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHh-HHHHHHHHHHH
Q 011328          109 TRVVIDHGAVPIFVRLLSS-PT-DDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLS-MLRNATWTLSN  185 (488)
Q Consensus       109 ~~~~~~~g~i~~L~~~L~~-~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~-v~~~a~~~L~~  185 (488)
                      ++.+--.+ +...+..++. ++ +..++.+-.....|+.+ +..++.+--.++.. -++-|.+.++.. ....+.|.-..
T Consensus       451 ~~~~~p~~-va~~LnalSKWPd~p~c~~aa~~La~~l~~~-~~l~~a~~~q~~~~-~L~aLSK~Pd~~~c~~A~~~lA~r  527 (2710)
T PRK14707        451 CKALDPIN-VTQALDALSKWPDTPICGQTASALAARLAHE-RRLRKALKPQEVVI-ALHSLSKWPDTPICAEAASALAER  527 (2710)
T ss_pred             HhhcChHH-HHHHHHHhhcCCCChhHHHHHHHHHHHhccc-HHHHhhcCHHHHHH-HHHHhhcCCCcHHHHHHHHHHHHH
Confidence            77765555 4444445554 44 44444444444555543 33444443333332 333333545433 34445555555


Q ss_pred             hhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCC-CC-cchHhHHH
Q 011328          186 FCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH-PS-PSVLIPAL  263 (488)
Q Consensus       186 l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-~~-~~v~~~a~  263 (488)
                      +.........+...++...+-.+-+.++......+...|.......+.. ..-++..-+..+++.|+. ++ +..+..+.
T Consensus       528 l~~~~~l~~~~~~~~~~~~lnalSKwp~s~~C~~A~~~iA~~l~~~~~~-~~~L~aq~Vs~llNaLSKWP~~~aC~~Aa~  606 (2710)
T PRK14707        528 VVDELQLRKAFDAHQVVNTLKALSKWPDKQLCAVAASGLAERLADEPQL-PKDLHRQGVVIVLNALSKWPDTAVCAEAVN  606 (2710)
T ss_pred             hccchhhhhhhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHhhcchhh-HHhhhhhHHHHHHHhhccCCCcHHHHHHHH
Confidence            5544322222222333333334444555555555555665554433322 223444556667777755 44 34444444


Q ss_pred             HHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh-cCChh
Q 011328          264 RTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLL-NAEFE  342 (488)
Q Consensus       264 ~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~-~~~~~  342 (488)
                      ++-+.+.. .+..... ++..-+..++.-|+.-.+......+...|..-..........+-. .-+..+++-|+ -++.+
T Consensus       607 ~LA~~l~~-~~~lr~~-l~~q~lan~lNALSKWP~s~~C~~Aa~rLA~rl~~~~~l~~~fna-Q~vAn~LNALSKWPe~e  683 (2710)
T PRK14707        607 ALAERLVD-EPDLRKE-LDPVDVTNVLNALSKWPGTEVCAEVARLLAGRLVGDRLLRKTFNS-LDVANALNALSKWPDTP  683 (2710)
T ss_pred             HHHHHhcc-Chhhhhh-ccHHHHHHHHhhhhcCCCchHHHHHHHHHHHHhhhchhhHhhcch-HHHHHHHHhhhcCCCch
Confidence            44444443 3332222 333344455555543324455555555554333222333322322 23444444444 45777


Q ss_pred             HHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHh
Q 011328          343 IKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDD  422 (488)
Q Consensus       343 v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~  422 (488)
                      ....|+..|..-... ++.....+-..++-..|-.+-+.++......+...|..-+...+.            ....|..
T Consensus       684 ~Cr~Aa~~LA~rLa~-~~~Lr~al~pQ~vAN~LNALSKWP~~~~Cr~AA~~LA~rL~~~p~------------l~~a~~a  750 (2710)
T PRK14707        684 VCAAAAGGMAERLAA-DPGLRKELNPVDVANALNALSKWPRTPVCAAVASALAARVVAEPR------------LRKAFDA  750 (2710)
T ss_pred             HHHHHHHHHHHHHhc-ChhhHhhcCHHHHHHHHhhhhcCCCcHHHHHHHHHHHHHHhcChh------------hhhhcCH
Confidence            778888887655443 345555544444444444455567766655555555444322221            2344555


Q ss_pred             hccHHHHHHhhcCCCHH-HHHHHHHHHHHhcC
Q 011328          423 AEGLEKIENLQSHDNTE-IYEKAVKILETYWV  453 (488)
Q Consensus       423 ~g~~~~L~~l~~~~~~~-v~~~a~~~l~~~~~  453 (488)
                      .+.-..|..|..=+..+ =+..+..+.+++..
T Consensus       751 QevANaLNALSKWPd~~~C~~AA~aLA~rLa~  782 (2710)
T PRK14707        751 QQVATALNALSKWPDNQACAAAANTLAERQLR  782 (2710)
T ss_pred             HHHHHHHHHhhcCCCchHHHHHHHHHHHHHhh
Confidence            55556666666555444 44455555555543

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=95.77  E-value=0.066  Score=45.88  Aligned_cols=112  Identities=17%  Similarity=0.193  Sum_probs=79.2

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcC--------CCChhHHHHHHHHHHHh
Q 011328           30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSR--------DDFPQLQFEAAWALTNI  101 (488)
Q Consensus        30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~--------~~~~~v~~~a~~~L~~l  101 (488)
                      .....+++.+.+.....  ..+..|...+...+....+.+++.|++..|+++|..        .........+++|+..+
T Consensus        66 ~~p~~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal  143 (187)
T PF06371_consen   66 SSPEWYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKAL  143 (187)
T ss_dssp             HHHHHHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHH
Confidence            34555778887655432  444455554554434557888899999999998752        12257889999999999


Q ss_pred             cCCCchhhHHHH-hCCCHHHHHHhhCCCCHHHHHHHHHHHhhhh
Q 011328          102 ASGTSENTRVVI-DHGAVPIFVRLLSSPTDDVREQAVWALGNVA  144 (488)
Q Consensus       102 ~~~~~~~~~~~~-~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~  144 (488)
                      .. +...+..++ ..+.+..+...|.+++..++..++.+|..+|
T Consensus       144 ~n-~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc  186 (187)
T PF06371_consen  144 MN-TKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC  186 (187)
T ss_dssp             TS-SHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred             Hc-cHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence            98 556566665 5689999999999999999999999999886

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]

Probab=95.72  E-value=2.1  Score=47.14  Aligned_cols=147  Identities=12%  Similarity=0.092  Sum_probs=86.6

Q ss_pred             CChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHH
Q 011328          284 QALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQI  363 (488)
Q Consensus       284 ~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~  363 (488)
                      +++|.|-.-|.+. +..+|..|...++.+......... =-...++...+.-+.+.+.+||.++.....++..+. +...
T Consensus       259 ~vip~l~~eL~se-~~~~Rl~a~~lvg~~~~~~~~~l~-~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~-~~~~  335 (1266)
T KOG1525|consen  259 AVIPQLEFELLSE-QEEVRLKAVKLVGRMFSDKDSQLS-ETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNN-PSIA  335 (1266)
T ss_pred             HHHHHHHHHHhcc-hHHHHHHHHHHHHHHHhcchhhhc-ccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcC-chhh
Confidence            6889999999888 899999999999999875332221 001234566666777788999999999998887653 3322


Q ss_pred             HHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHH
Q 011328          364 KFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEK  443 (488)
Q Consensus       364 ~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~~~~~v~~~  443 (488)
                      ...   +....+.....+.+..++..++-.......                +.-.+... .+..+.+.+.+...+||..
T Consensus       336 ~~~---~~~~~l~~~~~D~~~rir~~v~i~~~~v~~----------------~~l~~~~~-ll~~~~eR~rDKk~~VR~~  395 (1266)
T KOG1525|consen  336 KAS---TILLALRERDLDEDVRVRTQVVIVACDVMK----------------FKLVYIPL-LLKLVAERLRDKKIKVRKQ  395 (1266)
T ss_pred             hHH---HHHHHHHhhcCChhhhheeeEEEEEeehhH----------------hhhhhhHH-HHHHHHHHHhhhhHHHHHH
Confidence            221   223333333333333332222111111111                11112222 4555566666777888888


Q ss_pred             HHHHHHHhcC
Q 011328          444 AVKILETYWV  453 (488)
Q Consensus       444 a~~~l~~~~~  453 (488)
                      |..-+..+|.
T Consensus       396 Am~~LaqlYk  405 (1266)
T KOG1525|consen  396 AMNGLAQLYK  405 (1266)
T ss_pred             HHHHHHHHHH
Confidence            8887777776

>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]

Probab=95.71  E-value=2.8  Score=42.64  Aligned_cols=281  Identities=14%  Similarity=0.063  Sum_probs=159.7

Q ss_pred             CCCHHHHHHhhCC--------CCHHHHHHHHHHHhhhhC--CCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHH
Q 011328          115 HGAVPIFVRLLSS--------PTDDVREQAVWALGNVAG--DSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLS  184 (488)
Q Consensus       115 ~g~i~~L~~~L~~--------~~~~v~~~a~~~L~~l~~--~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~  184 (488)
                      .|+++.+...|..        +++.-.+.|++.++++..  ..+.....+++.-++..++..+ ++..--++..+|..++
T Consensus       407 qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f-~s~ygfL~Srace~is  485 (970)
T COG5656         407 QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAF-RSNYGFLKSRACEFIS  485 (970)
T ss_pred             hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhh-cCcccchHHHHHHHHH
Confidence            3788988888832        345667888888888864  2222223344433444455455 5566668889999999


Q ss_pred             HhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHh---CCHHHHHHhcCCCCcchHhH
Q 011328          185 NFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA---GVCPRLVELLRHPSPSVLIP  261 (488)
Q Consensus       185 ~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~---~~l~~L~~lL~~~~~~v~~~  261 (488)
                      .+..+  -+.......+.......+++++-.|+..|+.++..+..+..  ....+..   +.++.|+.+-+.-+-++...
T Consensus       486 ~~eeD--fkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q--~h~k~sahVp~tmekLLsLSn~feiD~LS~  561 (970)
T COG5656         486 TIEED--FKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQ--SHEKFSAHVPETMEKLLSLSNTFEIDPLSM  561 (970)
T ss_pred             HHHHh--cccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchh--hhHHHHhhhhHHHHHHHHhcccccchHHHH
Confidence            98544  33334455677778888888888999999989888776542  2323333   33444444444433344444


Q ss_pred             HHHHH-hHhhcCCchhhHHHh---hCCChHHHHHHhcccc-----hhhHHHHHHHHHHHHhc------CCHHHHHHHHHc
Q 011328          262 ALRTV-GNIVTGDDMQTQCII---NHQALPCLLDLLTQNY-----KKSIKKEACWTISNITA------GNVNQIQAIIEA  326 (488)
Q Consensus       262 a~~~L-~~l~~~~~~~~~~~~---~~~~~~~L~~lL~~~~-----~~~v~~~a~~~L~nl~~------~~~~~~~~l~~~  326 (488)
                      ++..+ ...+..-......+.   ...++.....++.++.     ..+-+..|.+.|..+..      ..+...+.+.. 
T Consensus       562 vMe~fVe~fseELspfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiLSlen~p~vLk~le~-  640 (970)
T COG5656         562 VMESFVEYFSEELSPFAPELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGILRTIESMILSLENRPLVLKYLEV-  640 (970)
T ss_pred             HHHHHHHHhHHhhchhHHHHHHHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHHhcccchHHHHHHHH-
Confidence            33332 222221111111111   1123333444443331     11233455555554432      23444444433 


Q ss_pred             CChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCH-HHHHHHHHHHHHHHHhhhhh
Q 011328          327 GIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDP-RIVTVCLEGLENILKAGEAE  404 (488)
Q Consensus       327 ~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~-~v~~~al~~L~~l~~~~~~~  404 (488)
                      ...|.+-=.+.+.-.++-.+|+..+-+.+... .+..+.  .-|+.+.+.+++.++.. .-.+.+..++.|++.++...
T Consensus       641 slypvi~Filkn~i~dfy~Ea~dildg~tf~s-keI~pi--mwgi~Ell~~~l~~~~t~~y~ee~~~al~nfityG~~e  716 (970)
T COG5656         641 SLYPVISFILKNEISDFYQEALDILDGYTFMS-KEIEPI--MWGIFELLLNLLIDEITAVYSEEVADALDNFITYGKTE  716 (970)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHhhhhHHH-HHhhhh--hhHHHHHHHhcccccchhhhHHHHHHHHHHHHHhCccc
Confidence            35665555666667778888888887776432 222222  22678888888887774 55677888999999988544

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=95.65  E-value=0.21  Score=44.39  Aligned_cols=101  Identities=17%  Similarity=0.134  Sum_probs=83.3

Q ss_pred             HHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHh
Q 011328           45 NIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRL  124 (488)
Q Consensus        45 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~  124 (488)
                      .....|++.|.-++--. ++....+.+...++.++++|.....+.++..++.+|..+..+++.+...+-+.+++..++.+
T Consensus       106 ~li~~aL~vLQGl~LLH-p~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~l  184 (257)
T PF08045_consen  106 SLIALALRVLQGLCLLH-PPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSL  184 (257)
T ss_pred             HHHHHHHHHHHHHHHcC-chHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHH
Confidence            34556777887766554 66677777899999999999665448999999999999999899999999999999999999


Q ss_pred             hCC--CCHHHHHHHHHHHhhhhCC
Q 011328          125 LSS--PTDDVREQAVWALGNVAGD  146 (488)
Q Consensus       125 L~~--~~~~v~~~a~~~L~~l~~~  146 (488)
                      +++  .+.+++-.++..|.-+...
T Consensus       185 lk~~~~~~~~r~K~~EFL~fyl~~  208 (257)
T PF08045_consen  185 LKSKSTDRELRLKCIEFLYFYLMP  208 (257)
T ss_pred             HccccccHHHhHHHHHHHHHHHcc
Confidence            987  5688888888888777643

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]

Probab=95.62  E-value=0.56  Score=49.04  Aligned_cols=192  Identities=15%  Similarity=0.129  Sum_probs=130.9

Q ss_pred             chHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhc-CCCCcchHhHHHHHHhHhhcCCchhhH
Q 011328          200 PALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL-RHPSPSVLIPALRTVGNIVTGDDMQTQ  278 (488)
Q Consensus       200 ~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~  278 (488)
                      .+.+.+-.-+.+.++.-+..++..+............ -...+.+..++... .+.+-.+...++.+|..++........
T Consensus       253 ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~-~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~  331 (815)
T KOG1820|consen  253 KITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIV-KGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFR  331 (815)
T ss_pred             hcChHHHHhhhccchHHHHHHHHHHHHHHhccccccc-cCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhH
Confidence            3344455556678899999999988887765541111 11123444444443 455677888899999999887665543


Q ss_pred             HHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCC
Q 011328          279 CIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG  358 (488)
Q Consensus       279 ~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~  358 (488)
                      .. ..++.+.+++-+... ...++..+..++-.++...+-       ..+.+.+...+.++++.++..+...+.......
T Consensus       332 ~~-~~~v~p~lld~lkek-k~~l~d~l~~~~d~~~ns~~l-------~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~  402 (815)
T KOG1820|consen  332 KY-AKNVFPSLLDRLKEK-KSELRDALLKALDAILNSTPL-------SKMSEAILEALKGKNPQIKGECLLLLDRKLRKL  402 (815)
T ss_pred             HH-HHhhcchHHHHhhhc-cHHHHHHHHHHHHHHHhcccH-------HHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhc
Confidence            33 336788889988887 777887777776666553221       136777888999999999999888888877654


Q ss_pred             CHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhh
Q 011328          359 SNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAG  401 (488)
Q Consensus       359 ~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~  401 (488)
                      ++.....-.-.++++.++....+.+.+||..+++++..++..-
T Consensus       403 ~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~  445 (815)
T KOG1820|consen  403 GPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVH  445 (815)
T ss_pred             CCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHh
Confidence            3211111122357888899999999999999999999887653

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=95.62  E-value=0.017  Score=32.73  Aligned_cols=29  Identities=28%  Similarity=0.483  Sum_probs=25.4

Q ss_pred             CHHHHHHhhcCCCChhHHHHHHHHHHHhcC
Q 011328           74 VVPRFIEFLSRDDFPQLQFEAAWALTNIAS  103 (488)
Q Consensus        74 ~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~  103 (488)
                      ++|.+++++++++ +++|..|+++|+.++.
T Consensus         1 llp~l~~~l~D~~-~~VR~~a~~~l~~i~~   29 (31)
T PF02985_consen    1 LLPILLQLLNDPS-PEVRQAAAECLGAIAE   29 (31)
T ss_dssp             HHHHHHHHHT-SS-HHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHcCCCC-HHHHHHHHHHHHHHHh
Confidence            3789999999999 9999999999999875

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=95.52  E-value=0.13  Score=49.92  Aligned_cols=124  Identities=23%  Similarity=0.299  Sum_probs=87.3

Q ss_pred             CCCHHHHHHh-hCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCC
Q 011328          115 HGAVPIFVRL-LSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQP  193 (488)
Q Consensus       115 ~g~i~~L~~~-L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~  193 (488)
                      .|++..++.. .++.+.++|+.|.-+|+-+|.+++.         .+...+++|.++.+..++...+.+|.-.|.+..  
T Consensus       550 ~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~---------~lv~tvelLs~shN~hVR~g~AvaLGiacag~G--  618 (926)
T COG5116         550 LGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRD---------LLVGTVELLSESHNFHVRAGVAVALGIACAGTG--  618 (926)
T ss_pred             chhHhhhheeecccCchHHHHHHHHheeeeEecCcc---------hhhHHHHHhhhccchhhhhhhHHHhhhhhcCCc--
Confidence            3567777776 5668999999999999999977654         456677888778889999999999988887642  


Q ss_pred             ChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCC
Q 011328          194 LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP  254 (488)
Q Consensus       194 ~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~  254 (488)
                          ...++..|-.++.+++.-|++.|+-+++.+.....+....-+. ++...+.+.+.+.
T Consensus       619 ----~~~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v~-~I~k~f~~vI~~K  674 (926)
T COG5116         619 ----DKVATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPNVK-RIIKKFNRVIVDK  674 (926)
T ss_pred             ----cHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChhHH-HHHHHHHHHHhhh
Confidence                1235566777778889999999999998877432222111111 4455555555443

>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.48  E-value=3.6  Score=42.25  Aligned_cols=345  Identities=12%  Similarity=0.089  Sum_probs=180.5

Q ss_pred             HHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHH--hCCCHHHH
Q 011328           44 RNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVI--DHGAVPIF  121 (488)
Q Consensus        44 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~--~~g~i~~L  121 (488)
                      .-+|.+.++.+....+..-   ... ...-.-..+.+++++.++.-++..+++++.-...+-.-..+.+.  -......+
T Consensus       501 RiiRRRVa~ilg~Wvsvq~---~~e-~k~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~l  576 (978)
T KOG1993|consen  501 RIIRRRVAWILGQWVSVQQ---KLE-LKPLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFVLL  576 (978)
T ss_pred             hHHHHHHHHHHhhhhheec---hHh-HHHHHHHHHHHhcCccccceeehHHHHHHHHhhhhccCChhhhhhhHHHHHHHH
Confidence            4567778888888765331   111 11223456778888885477888899998888763222222222  12445555


Q ss_pred             HHhhCC-CCHHHHHHHHHHHhhhhCCCchhH-HHHHhcCChHHHHHHhc-ccc-cHhHHHHHHHHHHHhhcCCCCCChhh
Q 011328          122 VRLLSS-PTDDVREQAVWALGNVAGDSPKCR-DLVLSNGALMPLLAQFN-EHA-KLSMLRNATWTLSNFCRGKPQPLFEQ  197 (488)
Q Consensus       122 ~~~L~~-~~~~v~~~a~~~L~~l~~~~~~~~-~~~~~~~~l~~L~~ll~-~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~  197 (488)
                      .++++. +.-+.+...+.+++.+.....+.. ....   .+-.++..+- .++ .+-++...+.+|.++...-.......
T Consensus       577 fkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~P~~~---~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS~~~  653 (978)
T KOG1993|consen  577 FKLLKAVEECDTKTSVLNLLSTLIERVSEHIAPYAS---TIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQSFEF  653 (978)
T ss_pred             HHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHH---HHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCCccc
Confidence            566655 566777788888888865432211 1111   1122222222 223 33456667788888876543333333


Q ss_pred             hhchHHHHHHhhc--cC-ChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCc
Q 011328          198 TRPALPALERLIH--SN-DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDD  274 (488)
Q Consensus       198 ~~~~~~~l~~ll~--~~-~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~  274 (488)
                      ..-.+|.+-....  ++ ..-..+.+...-.....+.+.....+.  ++++.+..++....+ ....++.++....--..
T Consensus       654 ~~fL~pVIel~~D~~sP~hv~L~EDgmeLW~~~L~n~~~l~p~ll--~L~p~l~~~iE~ste-~L~t~l~Ii~sYilLd~  730 (978)
T KOG1993|consen  654 YPFLYPVIELSTDPSSPEHVYLLEDGMELWLTTLMNSQKLTPELL--LLFPHLLYIIEQSTE-NLPTVLMIISSYILLDN  730 (978)
T ss_pred             hHHHHHHHHHhcCCCCCceeehhhhHHHHHHHHHhcccccCHHHH--HHHHHHHHHHHhhhh-hHHHHHHHHHHHHhhcc
Confidence            3333333222222  11 122344444333333333332222232  566777777765443 33344555444332222


Q ss_pred             hhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhc--CChhHHHHHHHHHH
Q 011328          275 MQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN--AEFEIKKEAAWAIS  352 (488)
Q Consensus       275 ~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~--~~~~v~~~a~~aL~  352 (488)
                      .....-...|+.+.+.+++.+- ..+-....+.++..+...++ ........++++.+..-+-.  +.+.+...-+..++
T Consensus       731 ~~fl~~y~~~i~k~~~~~l~dv-r~egl~avLkiveili~t~~-il~~~~~~~~L~~lf~~I~~~~~yP~~~~~yl~vva  808 (978)
T KOG1993|consen  731 TVFLNDYAFGIFKKLNDLLDDV-RNEGLQAVLKIVEILIKTNP-ILGSLLFSPLLSRLFLSIAENDKYPYVMGEYLLVVA  808 (978)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHhhhH-HHHhhhcchhhHHHHHHHHhCCCCchhHHHHHHHHH
Confidence            2222222346777777777665 44555566666777766544 55666667888887775533  36677777888888


Q ss_pred             HhccCCCHHHHHHHHH-CCChHHHHh--------hcC-CCCHHHHHHHHHHHHHHHHhh
Q 011328          353 NATSGGSNEQIKFLVS-QGCIKPLCD--------LLN-CPDPRIVTVCLEGLENILKAG  401 (488)
Q Consensus       353 ~l~~~~~~~~~~~l~~-~~~i~~L~~--------ll~-~~~~~v~~~al~~L~~l~~~~  401 (488)
                      .+.... ++....+.+ ..-.+.++.        +.+ -.+++-++..+-++..++..+
T Consensus       809 Ri~l~n-~~~~msvlqt~~~~d~~~~~li~~WI~~~~~I~~~k~rKl~~LalsSll~t~  866 (978)
T KOG1993|consen  809 RISLRN-PSLFMSVLQTKNTYDILIAMLIGNWILLFDHINHPKDRKLNTLALSSLLRTN  866 (978)
T ss_pred             HHHhcC-hHHHHHHHHhhhhHHHHHHHHHHHHHHHcccCCCHHHhhHHHHHHHHHhccC
Confidence            887654 343333332 222233331        122 235666666666666666553

>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []

Probab=95.43  E-value=2.4  Score=39.98  Aligned_cols=160  Identities=18%  Similarity=0.175  Sum_probs=117.1

Q ss_pred             hHHHHHHhcccchhhHHHHHHHHHHHHhc-CCHHHHHHHHHc-CC-hHHHHHHHhcC-----C--------hhHHHHHHH
Q 011328          286 LPCLLDLLTQNYKKSIKKEACWTISNITA-GNVNQIQAIIEA-GI-IGPLVNLLLNA-----E--------FEIKKEAAW  349 (488)
Q Consensus       286 ~~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~-~~-l~~L~~ll~~~-----~--------~~v~~~a~~  349 (488)
                      ++.+.+.|.+. ...+...++..+..++. .+......++.. ++ .+.+-+++...     +        +++|...+.
T Consensus        58 ~k~lyr~L~~~-~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~  136 (330)
T PF11707_consen   58 LKLLYRSLSSS-KPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIR  136 (330)
T ss_pred             HHHHHHHhCcC-cHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHH
Confidence            77888899888 77788899999999998 666666666642 22 34455555321     1        289999999


Q ss_pred             HHHHhccCCCHHHHHHHHH-CCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHH
Q 011328          350 AISNATSGGSNEQIKFLVS-QGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEK  428 (488)
Q Consensus       350 aL~~l~~~~~~~~~~~l~~-~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~  428 (488)
                      .+..+...+++.....+.+ .+.+..+.+-+..++++++..++..+..-+-.++...+.        .+..+=....+.+
T Consensus       137 F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~--------~K~~~fn~~~L~~  208 (330)
T PF11707_consen  137 FWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRS--------TKCKLFNEWTLSQ  208 (330)
T ss_pred             HHHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChh--------hhhhhcCHHHHHH
Confidence            9999988888877777655 467888888899988999999999998655444433322        1222333446888


Q ss_pred             HHHhhcCCCH----HHHHHHHHHHHHhcCC
Q 011328          429 IENLQSHDNT----EIYEKAVKILETYWVE  454 (488)
Q Consensus       429 L~~l~~~~~~----~v~~~a~~~l~~~~~~  454 (488)
                      |..+...+++    .+.+.+...+..+...
T Consensus       209 l~~Ly~~~~~~~~~~~~~~vh~fL~~lcT~  238 (330)
T PF11707_consen  209 LASLYSRDGEDEKSSVADLVHEFLLALCTD  238 (330)
T ss_pred             HHHHhcccCCcccchHHHHHHHHHHHHhcC
Confidence            9999888888    8999999999988763

The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.

>KOG1566 consensus Conserved protein Mo25 [Function unknown]

Probab=95.40  E-value=2  Score=38.93  Aligned_cols=212  Identities=14%  Similarity=0.116  Sum_probs=142.2

Q ss_pred             HHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchh---hHHHhhCCChHHHHHHhcccch-hhHHHHHHHHHHH
Q 011328          236 QAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQ---TQCIINHQALPCLLDLLTQNYK-KSIKKEACWTISN  311 (488)
Q Consensus       236 ~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~---~~~~~~~~~~~~L~~lL~~~~~-~~v~~~a~~~L~n  311 (488)
                      +.+.+.|.+..++..+..-+-+.+..++.+..++-...-..   ....+.. -.+.+..++....+ +++-..+...+..
T Consensus        73 qef~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t-~~e~~~~lv~~~~~~~~iaL~cg~mlrE  151 (342)
T KOG1566|consen   73 QEFYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLET-NPEILDNLVKGYENTPEIALTCGNMLRE  151 (342)
T ss_pred             HHHHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHh-CHHHHHHHHhhhccchHHHHHHHHHHHH
Confidence            45677799999999999888888888888888887632211   1111111 12233333333322 4555555555666


Q ss_pred             HhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCC----hHHHHhhcCCCCHHHH
Q 011328          312 ITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGC----IKPLCDLLNCPDPRIV  387 (488)
Q Consensus       312 l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~----i~~L~~ll~~~~~~v~  387 (488)
                      +.++ +...+.+....-+.....+++.+..++...|......+......-....+.. +.    .+.-..++.+.+.-++
T Consensus       152 cirh-e~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~-n~d~ff~e~~~~Ll~s~Nyvtk  229 (342)
T KOG1566|consen  152 CIRH-EFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIR-NYDNFFAEVYEKLLRSENYVTK  229 (342)
T ss_pred             HHhh-HHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHh-ChhhhHHHHHHHHhcccceehH
Confidence            6555 5566667777788889999999999999999999988876654344444443 32    4446678888888888


Q ss_pred             HHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCCC
Q 011328          388 TVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVEEDEDE  459 (488)
Q Consensus       388 ~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~~~~~  459 (488)
                      .+++.++..++-...+...         ....+.+...++.+..++..++..++-.|-.+-.-+.-..++.+
T Consensus       230 rqs~kllg~llldr~N~~~---------M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnpnK~q  292 (342)
T KOG1566|consen  230 RQSLKLLGELLLDRSNSAV---------MTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANPNKPQ  292 (342)
T ss_pred             HHHHHhHHHHHhCCCcHHH---------HHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCCCCCc
Confidence            9999999988755443322         35566656668888888888888888888777665555544433

>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length

Probab=95.39  E-value=0.19  Score=41.55  Aligned_cols=147  Identities=10%  Similarity=0.055  Sum_probs=89.5

Q ss_pred             CCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHH
Q 011328           73 GVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRD  152 (488)
Q Consensus        73 ~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~  152 (488)
                      ..++.|+++|+.+.+..+|..++++++.+-.-+|-..+.+....  +.-  .-...+......... ........    +
T Consensus        10 ~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~--~~~--~~~~~~~~~~~~~l~-~~~~~~~~----e   80 (160)
T PF11865_consen   10 ELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSL--DSK--SSENSNDESTDISLP-MMGISPSS----E   80 (160)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccC--Ccc--ccccccccchhhHHh-hccCCCch----H
Confidence            46788889998887689999999999999886665444322111  100  001111222222111 11111111    2


Q ss_pred             HHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhc
Q 011328          153 LVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLS  228 (488)
Q Consensus       153 ~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~  228 (488)
                      ...-.-++..|++.|++.+-..-...++.++.++..............++|.++..+++.+...++..+.-|+.+.
T Consensus        81 e~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv  156 (160)
T PF11865_consen   81 EYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLV  156 (160)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            2222335778888885444444455677777777765555567778899999999999877788887777766653

It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].

>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism

Probab=95.36  E-value=0.83  Score=44.41  Aligned_cols=259  Identities=13%  Similarity=0.120  Sum_probs=140.9

Q ss_pred             HHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCC-C
Q 011328           50 ATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS-P  128 (488)
Q Consensus        50 a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~-~  128 (488)
                      .-..|..+....+.......++...+..|+.++.++| ++-|.....++.++-......|..+.. .+...+.+++.. .
T Consensus       110 vY~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D-~rER~~lk~~l~~iy~k~~~~r~~Ir~-~i~~~~~~fi~e~~  187 (409)
T PF01603_consen  110 VYEILLRFIESPPFDPAKKYIDQKFIKKLLELFDSPD-PRERDYLKTILHRIYGKFPNLRSFIRK-SINNIFYRFIYETE  187 (409)
T ss_dssp             HHHHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTSST-HHHHHHHHHHHHHHHHH-TTTHHHHHH-HHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHCccccHHHHHcCHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHHhhhhHHHHHH-HHHHHHHHHhcCcc
Confidence            3344555544432222333556678889999999999 999999999999987655666665543 445666676664 4


Q ss_pred             CHHHHHHHHHHHhhhhCCCc-hhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHH
Q 011328          129 TDDVREQAVWALGNVAGDSP-KCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALER  207 (488)
Q Consensus       129 ~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~  207 (488)
                      ...-...++..++.+..+-. ..++.-.. -....++.+.....-.........++..+...++    .....++..+++
T Consensus       188 ~~~gI~elLeil~sii~gf~~plk~eh~~-fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp----~l~~~~i~~llk  262 (409)
T PF01603_consen  188 RHNGIAELLEILGSIINGFAVPLKEEHKQ-FLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDP----SLAEPVIKGLLK  262 (409)
T ss_dssp             --STHHHHHHHHHHHHTT--SS--HHHHH-HHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-G----GGHHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHhccCCCCcHHHHH-HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCc----hhHHHHHHHHHH
Confidence            55566677888888875421 11111100 0112233333222222333445555555554332    111223333333


Q ss_pred             hhccCChhHHHHHHHHHHHhccCCc-hhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhC---
Q 011328          208 LIHSNDDEVLTDACWALSYLSDGTN-DKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINH---  283 (488)
Q Consensus       208 ll~~~~~~v~~~al~~L~~l~~~~~-~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~---  283 (488)
                      .=-..+..-....+.-+..+...-+ .....+ ...++..+..++.+++..|.+.|+..+.|=     .. ..++..   
T Consensus       263 ~WP~t~s~Kev~FL~el~~il~~~~~~~f~~i-~~~lf~~la~ci~S~h~qVAErAl~~w~n~-----~~-~~li~~~~~  335 (409)
T PF01603_consen  263 HWPKTNSQKEVLFLNELEEILEVLPPEEFQKI-MVPLFKRLAKCISSPHFQVAERALYFWNNE-----YF-LSLISQNSR  335 (409)
T ss_dssp             HS-SS-HHHHHHHHHHHHHHHTT--HHHHHHH-HHHHHHHHHHHHTSSSHHHHHHHHGGGGSH-----HH-HHHHHCTHH
T ss_pred             hCCCCCchhHHHHHHHHHHHHHhcCHHHHHHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHCCH-----HH-HHHHHhChH
Confidence            3333455555555556666655433 222222 235678888888999999998888765442     11 122221   


Q ss_pred             CChHHHHHHhcc-----cchhhHHHHHHHHHHHHhcCCHHHHHHH
Q 011328          284 QALPCLLDLLTQ-----NYKKSIKKEACWTISNITAGNVNQIQAI  323 (488)
Q Consensus       284 ~~~~~L~~lL~~-----~~~~~v~~~a~~~L~nl~~~~~~~~~~l  323 (488)
                      .+++.+...+..     - +..+|..|..++.-+..-+++....+
T Consensus       336 ~i~p~i~~~L~~~~~~HW-n~~Vr~~a~~vl~~l~~~d~~lf~~~  379 (409)
T PF01603_consen  336 VILPIIFPALYRNSKNHW-NQTVRNLAQNVLKILMEMDPKLFDKC  379 (409)
T ss_dssp             HHHHHHHHHHSSTTSS-S-STTHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence            356666666532     2 67899999999999988767755443

The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.

>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.33  E-value=3.5  Score=42.27  Aligned_cols=318  Identities=12%  Similarity=0.086  Sum_probs=176.5

Q ss_pred             HHHHHHhcCC-CHHHHHHHHHHHHHHhccCCCccHHHHH--HcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh
Q 011328           33 PAMVAGVWSD-DRNIQLDATTQFRKLLSIERSPPINEVI--QSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT  109 (488)
Q Consensus        33 ~~l~~~L~s~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~--~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~  109 (488)
                      ..++++|+.. |..+++.+++.+.-.+.+-+ -..+.+.  -.+....+.++++.-..-+.|...+..++.+.....+..
T Consensus       529 ~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~n-F~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I  607 (978)
T KOG1993|consen  529 CAFLNLLQDQNDLVVRLTTARTLKLVVDDWN-FSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEHI  607 (978)
T ss_pred             HHHHHhcCccccceeehHHHHHHHHhhhhcc-CChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhh
Confidence            3677888865 77889999999998876541 1112111  245666777777765435677778888877766333322


Q ss_pred             HHHHhCCCHHHHHHhhC--CCCHHHHHHHHHHHhhhhC----CCchhHHHHHhcCChHHHHHHhcccccHh---HHHHHH
Q 011328          110 RVVIDHGAVPIFVRLLS--SPTDDVREQAVWALGNVAG----DSPKCRDLVLSNGALMPLLAQFNEHAKLS---MLRNAT  180 (488)
Q Consensus       110 ~~~~~~g~i~~L~~~L~--~~~~~v~~~a~~~L~~l~~----~~~~~~~~~~~~~~l~~L~~ll~~~~~~~---v~~~a~  180 (488)
                      .... ..++..+-.+-+  ++.+-+|...+.+|.++..    .+..+.      .++-+++++-.+-++++   ..+.+.
T Consensus       608 ~P~~-~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS~~~~------~fL~pVIel~~D~~sP~hv~L~EDgm  680 (978)
T KOG1993|consen  608 APYA-STIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQSFEFY------PFLYPVIELSTDPSSPEHVYLLEDGM  680 (978)
T ss_pred             hHHH-HHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCCccch------HHHHHHHHHhcCCCCCceeehhhhHH
Confidence            2111 112222222222  2567788888888888863    122221      12334555442222221   333444


Q ss_pred             HHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhc-cCCchhHHHHHHhCCHHHHHHhcCCCCcchH
Q 011328          181 WTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLS-DGTNDKIQAVIEAGVCPRLVELLRHPSPSVL  259 (488)
Q Consensus       181 ~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~-~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~  259 (488)
                      ..-.....+. ..-....-+.+|.+...+......++ .++.++.... -.+....+ -...|+...+..++.+-..+-.
T Consensus       681 eLW~~~L~n~-~~l~p~ll~L~p~l~~~iE~ste~L~-t~l~Ii~sYilLd~~~fl~-~y~~~i~k~~~~~l~dvr~egl  757 (978)
T KOG1993|consen  681 ELWLTTLMNS-QKLTPELLLLFPHLLYIIEQSTENLP-TVLMIISSYILLDNTVFLN-DYAFGIFKKLNDLLDDVRNEGL  757 (978)
T ss_pred             HHHHHHHhcc-cccCHHHHHHHHHHHHHHHhhhhhHH-HHHHHHHHHHhhccHHHHH-HHHHHHHHHHHHHHHHhhHHHH
Confidence            3333333333 22223345677788877765443333 3333333322 22322222 2233778888888877666667


Q ss_pred             hHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHh-cccchhhHHHHHHHHHHHHhcCCHHHHHHHHH-cCChHHHHHHH-
Q 011328          260 IPALRTVGNIVTGDDMQTQCIINHQALPCLLDLL-TQNYKKSIKKEACWTISNITAGNVNQIQAIIE-AGIIGPLVNLL-  336 (488)
Q Consensus       260 ~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL-~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~-~~~l~~L~~ll-  336 (488)
                      ...+.++..+...++ ........++++.+..-+ .....+-+-..-+.+++.++..+++....+++ ..-.+.++..+ 
T Consensus       758 ~avLkiveili~t~~-il~~~~~~~~L~~lf~~I~~~~~yP~~~~~yl~vvaRi~l~n~~~~msvlqt~~~~d~~~~~li  836 (978)
T KOG1993|consen  758 QAVLKIVEILIKTNP-ILGSLLFSPLLSRLFLSIAENDKYPYVMGEYLLVVARISLRNPSLFMSVLQTKNTYDILIAMLI  836 (978)
T ss_pred             HHHHHHHHHHHhhhH-HHHhhhcchhhHHHHHHHHhCCCCchhHHHHHHHHHHHHhcChHHHHHHHHhhhhHHHHHHHHH
Confidence            777888887777555 334444567777766644 33326667777777888887777777766654 22233333211 


Q ss_pred             -------hc-CChhHHHHHHHHHHHhccCCCHHH
Q 011328          337 -------LN-AEFEIKKEAAWAISNATSGGSNEQ  362 (488)
Q Consensus       337 -------~~-~~~~v~~~a~~aL~~l~~~~~~~~  362 (488)
                             .. .+++-|+--+-|+..+...+.+..
T Consensus       837 ~~WI~~~~~I~~~k~rKl~~LalsSll~t~~~~i  870 (978)
T KOG1993|consen  837 GNWILLFDHINHPKDRKLNTLALSSLLRTNNPDI  870 (978)
T ss_pred             HHHHHHcccCCCHHHhhHHHHHHHHHhccCCcHH
Confidence                   11 267777777888888877654443

>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II

Probab=95.32  E-value=2.1  Score=38.68  Aligned_cols=223  Identities=15%  Similarity=0.098  Sum_probs=133.9

Q ss_pred             HHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhc-ccccHhHHHHHHHHHHHhhcCCCCCChhhh
Q 011328          120 IFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN-EHAKLSMLRNATWTLSNFCRGKPQPLFEQT  198 (488)
Q Consensus       120 ~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~  198 (488)
                      .|-..|.++++.+|..++..|+.+...-+..   .....-+..++.... +-.|......++.++..|..... ......
T Consensus         3 ~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~---~L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~-~~~~~~   78 (262)
T PF14500_consen    3 SLGEYLTSEDPIIRAKALELLSEVLERLPPD---FLSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKN-FSPESA   78 (262)
T ss_pred             chhhhhCCCCHHHHHHHHHHHHHHHHhCCHh---hccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcC-CChhhH
Confidence            4556788899999999999999887654421   122223445555442 11355555556777777764432 111223


Q ss_pred             hchHHHHHHhhc--cCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCC-CCcchHhHHHHHHhHhhcCCch
Q 011328          199 RPALPALERLIH--SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH-PSPSVLIPALRTVGNIVTGDDM  275 (488)
Q Consensus       199 ~~~~~~l~~ll~--~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~  275 (488)
                      ..++..+.+-..  +.-...|..+...+..+..+.....+ -...+.+..+++.+.. .+|.-...+...+..+....+-
T Consensus        79 ~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~-~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~  157 (262)
T PF14500_consen   79 VKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQ-SMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDI  157 (262)
T ss_pred             HHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHH-hchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccc
Confidence            334444443222  22467788888888888866443322 1223667778888866 4677777777777777664431


Q ss_pred             hhHHHhhCCChHHHHHHhcc--------cc-h--hhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHH
Q 011328          276 QTQCIINHQALPCLLDLLTQ--------NY-K--KSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIK  344 (488)
Q Consensus       276 ~~~~~~~~~~~~~L~~lL~~--------~~-~--~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~  344 (488)
                             ....+-+.+.+..        +. +  .-.+......|.++...++..     ..-.+|.|++-|.++...+|
T Consensus       158 -------~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~f-----a~~~~p~LleKL~s~~~~~K  225 (262)
T PF14500_consen  158 -------SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLF-----APFAFPLLLEKLDSTSPSVK  225 (262)
T ss_pred             -------chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhh-----HHHHHHHHHHHHcCCCcHHH
Confidence                   2334445554421        11 1  124455555666665554432     22378999999999999999


Q ss_pred             HHHHHHHHHhccCCC
Q 011328          345 KEAAWAISNATSGGS  359 (488)
Q Consensus       345 ~~a~~aL~~l~~~~~  359 (488)
                      ..++.+|...+..-+
T Consensus       226 ~D~L~tL~~c~~~y~  240 (262)
T PF14500_consen  226 LDSLQTLKACIENYG  240 (262)
T ss_pred             HHHHHHHHHHHHHCC
Confidence            999999988876443

>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5

Probab=95.32  E-value=0.18  Score=35.03  Aligned_cols=66  Identities=24%  Similarity=0.358  Sum_probs=53.1

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC-ChhHHHHHHHHHHHhccCCCHHHHHHHHHCC
Q 011328          302 KKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA-EFEIKKEAAWAISNATSGGSNEQIKFLVSQG  370 (488)
Q Consensus       302 ~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~  370 (488)
                      .+.++|+++++++. +.....+.+.++++.++++.... ...+|..|..+|+-++.  +.+..+.|.+.|
T Consensus         4 lKaaLWaighIgss-~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~--T~~G~~~L~~~g   70 (73)
T PF14668_consen    4 LKAALWAIGHIGSS-PLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISS--TEEGAEILDELG   70 (73)
T ss_pred             HHHHHHHHHhHhcC-hHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhC--CHHHHHHHHHcC
Confidence            57899999999875 55566666789999999998864 77899999999999986  446677766654

>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II

Probab=95.31  E-value=1.6  Score=39.37  Aligned_cols=224  Identities=14%  Similarity=0.059  Sum_probs=128.1

Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcC--CCChhHHHHHHHHHHHhcCCCchhhHHH
Q 011328           35 MVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSR--DDFPQLQFEAAWALTNIASGTSENTRVV  112 (488)
Q Consensus        35 l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~  112 (488)
                      |=..|.++|+.+|..|+..|..++..-+....    ...-+..|++.+.+  .+ ......++.++..+... .......
T Consensus         4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L----~~~ev~~L~~F~~~rl~D-~~~~~~~l~gl~~L~~~-~~~~~~~   77 (262)
T PF14500_consen    4 LGEYLTSEDPIIRAKALELLSEVLERLPPDFL----SRQEVQVLLDFFCSRLDD-HACVQPALKGLLALVKM-KNFSPES   77 (262)
T ss_pred             hhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhc----cHHHHHHHHHHHHHHhcc-HhhHHHHHHHHHHHHhC-cCCChhh
Confidence            44577899999999999999999886532221    11223444444321  23 34444456777666642 2111111


Q ss_pred             HhCCCHHHHHHhhC--CCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCC
Q 011328          113 IDHGAVPIFVRLLS--SPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK  190 (488)
Q Consensus       113 ~~~g~i~~L~~~L~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~  190 (488)
                       ...++..+.+-.+  +.....|..+...+..+.......- .-...+.+..++..+....||.-...+...+..+...-
T Consensus        78 -~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l-~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~  155 (262)
T PF14500_consen   78 -AVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREAL-QSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEF  155 (262)
T ss_pred             -HHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHH-HhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhc
Confidence             1112333333222  2446778888888888876532211 11223467788888877779988888888888777654


Q ss_pred             CCCChhhhhchHHHHHHhhc-----cC-Ch--hHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHH
Q 011328          191 PQPLFEQTRPALPALERLIH-----SN-DD--EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPA  262 (488)
Q Consensus       191 ~~~~~~~~~~~~~~l~~ll~-----~~-~~--~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a  262 (488)
                      +.  .......++.+....-     .+ |+  -.++..-..|.......+..     ..-.++.|++-|.+..+.++..+
T Consensus       156 ~~--~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~f-----a~~~~p~LleKL~s~~~~~K~D~  228 (262)
T PF14500_consen  156 DI--SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLF-----APFAFPLLLEKLDSTSPSVKLDS  228 (262)
T ss_pred             cc--chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhh-----HHHHHHHHHHHHcCCCcHHHHHH
Confidence            32  2222333333333321     11 22  12344444444444433322     23678999999999999999999


Q ss_pred             HHHHhHhhcCC
Q 011328          263 LRTVGNIVTGD  273 (488)
Q Consensus       263 ~~~L~~l~~~~  273 (488)
                      +.+|...+...
T Consensus       229 L~tL~~c~~~y  239 (262)
T PF14500_consen  229 LQTLKACIENY  239 (262)
T ss_pred             HHHHHHHHHHC
Confidence            99998877643

>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4

Probab=95.26  E-value=3.8  Score=43.11  Aligned_cols=239  Identities=16%  Similarity=0.189  Sum_probs=141.6

Q ss_pred             hchHHHHHHhhcc-----CChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcC----CCC----cchHhHHHHH
Q 011328          199 RPALPALERLIHS-----NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR----HPS----PSVLIPALRT  265 (488)
Q Consensus       199 ~~~~~~l~~ll~~-----~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~----~~~----~~v~~~a~~~  265 (488)
                      .+++..++.++.+     .........+..|...+... ...+.+++.+.++.|+..+.    .+.    +.+.+..+.+
T Consensus       116 ~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~-~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~I  194 (802)
T PF13764_consen  116 CGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVK-VNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLEI  194 (802)
T ss_pred             CCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhH-HHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHHH
Confidence            3677777777764     23456666677777666654 44577888999999888774    333    5677777777


Q ss_pred             HhHhhcCCchhhH----HHh--------hCCChHHHHHHhcccc---hhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChH
Q 011328          266 VGNIVTGDDMQTQ----CII--------NHQALPCLLDLLTQNY---KKSIKKEACWTISNITAGNVNQIQAIIEAGIIG  330 (488)
Q Consensus       266 L~~l~~~~~~~~~----~~~--------~~~~~~~L~~lL~~~~---~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~  330 (488)
                      +..+.........    ...        ....+..+++.+.++.   ++.+....+++|-+|+.++++..+.+++.  +.
T Consensus       195 iE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~--F~  272 (802)
T PF13764_consen  195 IESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH--FK  272 (802)
T ss_pred             HHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH--HH
Confidence            7666643221100    000        1123566666665542   57888999999999999988888877763  23


Q ss_pred             HHHHHHhcC---ChhHHHHHHHHHHHhccCC-----CHHHHHHHHHCCChHHHHhhcCCC--------CHH--------H
Q 011328          331 PLVNLLLNA---EFEIKKEAAWAISNATSGG-----SNEQIKFLVSQGCIKPLCDLLNCP--------DPR--------I  386 (488)
Q Consensus       331 ~L~~ll~~~---~~~v~~~a~~aL~~l~~~~-----~~~~~~~l~~~~~i~~L~~ll~~~--------~~~--------v  386 (488)
                      ..+++=.-+   ..+- ...+.+++.++.+-     ....+..+++.|++...++++...        .++        -
T Consensus       273 p~l~f~~~D~~~~~~~-~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~ps  351 (802)
T PF13764_consen  273 PYLDFDKFDEEHSPDE-QFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSRPS  351 (802)
T ss_pred             HhcChhhcccccCchH-HHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcCCc
Confidence            222321111   1111 23355555555432     246678888999998888876532        111        2


Q ss_pred             HHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhh-cCCCHHHHHHHHHHHHHhcCC
Q 011328          387 VTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQ-SHDNTEIYEKAVKILETYWVE  454 (488)
Q Consensus       387 ~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~-~~~~~~v~~~a~~~l~~~~~~  454 (488)
                      ...++..|.-++..-..             ...+...+++..+..|- .+...+|-..|-.+|+.+-+.
T Consensus       352 Lp~iL~lL~GLa~gh~~-------------tQ~~~~~~~l~~lH~LEqvss~~~IGslAEnlLeal~~~  407 (802)
T PF13764_consen  352 LPYILRLLRGLARGHEP-------------TQLLIAEQLLPLLHRLEQVSSEEHIGSLAENLLEALAEN  407 (802)
T ss_pred             HHHHHHHHHHHHhcCHH-------------HHHHHHhhHHHHHHHhhcCCCccchHHHHHHHHHHHhcC
Confidence            34455555555443221             12223455677777773 334667888888888877663

>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=95.26  E-value=0.3  Score=48.74  Aligned_cols=181  Identities=16%  Similarity=0.188  Sum_probs=123.8

Q ss_pred             hchHHHHHHhhcc----CChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcC-CCCcchHhHHHHHHhHhhcCC
Q 011328          199 RPALPALERLIHS----NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR-HPSPSVLIPALRTVGNIVTGD  273 (488)
Q Consensus       199 ~~~~~~l~~ll~~----~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~  273 (488)
                      ..+-|.+.+...+    .|+.++..|.-+|..+-.-+.+...     ..+|.++..+. +++|.+|..|.-.++.++...
T Consensus       891 s~F~pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~~fc~-----ehlpllIt~mek~p~P~IR~NaVvglgD~~vcf  965 (1128)
T COG5098         891 SNFKPVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSFEFCS-----EHLPLLITSMEKHPIPRIRANAVVGLGDFLVCF  965 (1128)
T ss_pred             hhhhHHHHHHhccccccCCHHHHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHhhCCCcceeccceeeccccceeh
Confidence            3344555556554    6788888888888776544332222     56788888886 789999999999998887654


Q ss_pred             chhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHH
Q 011328          274 DMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISN  353 (488)
Q Consensus       274 ~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~  353 (488)
                      .....     ..-..|.+-|.+. +..||+.+..++.++...+.-     --.|-++.+..+|.++|..+...|-..+..
T Consensus       966 N~~~d-----e~t~yLyrrL~De-~~~V~rtclmti~fLilagq~-----KVKGqlg~ma~~L~deda~Isdmar~fft~ 1034 (1128)
T COG5098         966 NTTAD-----EHTHYLYRRLGDE-DADVRRTCLMTIHFLILAGQL-----KVKGQLGKMALLLTDEDAEISDMARHFFTQ 1034 (1128)
T ss_pred             hhhhH-----HHHHHHHHHhcch-hhHHHHHHHHHHHHHHHccce-----eeccchhhhHhhccCCcchHHHHHHHHHHH
Confidence            43333     2345688888888 999999999999999764221     124678889999999999999999999999


Q ss_pred             hccCCCHHHHHHHHHCCChHHHHhhcCC---CCHHHHHHHHHHHHHHHHhhh
Q 011328          354 ATSGGSNEQIKFLVSQGCIKPLCDLLNC---PDPRIVTVCLEGLENILKAGE  402 (488)
Q Consensus       354 l~~~~~~~~~~~l~~~~~i~~L~~ll~~---~~~~v~~~al~~L~~l~~~~~  402 (488)
                      ++...+.      .-+|+++.+..+-.+   .+.. -...++.|..++....
T Consensus      1035 ~a~KdNt------~yn~fidifs~ls~~ae~g~e~-fk~II~FLt~fI~ker 1079 (1128)
T COG5098        1035 IAKKDNT------MYNGFIDIFSTLSSDAENGQEP-FKLIIGFLTDFISKER 1079 (1128)
T ss_pred             HHhcccc------hhhhhHHHHHHcCchhhcCCCc-HHHHHHHHHHHHHHHH
Confidence            9875432      123555555444322   2222 2455666666665554

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=95.24  E-value=2.6  Score=43.97  Aligned_cols=194  Identities=19%  Similarity=0.201  Sum_probs=114.4

Q ss_pred             HHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHH--HHHHhhccCCh-h
Q 011328          139 ALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALP--ALERLIHSNDD-E  215 (488)
Q Consensus       139 ~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~--~l~~ll~~~~~-~  215 (488)
                      +++++....+..-+.+.+.++...+...+..-...+++..++..+.+++...+..........+.  .+-.++...+. +
T Consensus       494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e  573 (699)
T KOG3665|consen  494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE  573 (699)
T ss_pred             HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence            45566666666677888899999999999766778889999999999987653333322222222  33334444343 6


Q ss_pred             HHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHH-HHHHhc
Q 011328          216 VLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPC-LLDLLT  294 (488)
Q Consensus       216 v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~-L~~lL~  294 (488)
                      .-..++..+..+...+++.......               +.+...-..++.....   ........ ..+.. +.+++.
T Consensus       574 rsY~~~siLa~ll~~~~~~~~~~~r---------------~~~~~~l~e~i~~~~~---~~~~~~~~-~~f~~~~~~il~  634 (699)
T KOG3665|consen  574 RSYNAASILALLLSDSEKTTECVFR---------------NSVNELLVEAISRWLT---SEIRVIND-RSFFPRILRILR  634 (699)
T ss_pred             HHHHHHHHHHHHHhCCCcCccccch---------------HHHHHHHHHHhhccCc---cceeehhh-hhcchhHHHHhc
Confidence            6677777777766554321111111               1122222222222221   11111222 22223 666666


Q ss_pred             ccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC-ChhHHHHHHHHH
Q 011328          295 QNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA-EFEIKKEAAWAI  351 (488)
Q Consensus       295 ~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~-~~~v~~~a~~aL  351 (488)
                      ....+....-|+|++.++...+++..+.+.+.++++.+.+.-... ..+++..+...+
T Consensus       635 ~s~~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  692 (699)
T KOG3665|consen  635 LSKSDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIRVLSEVVDVKEEAVLVI  692 (699)
T ss_pred             ccCCCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcchhHHHHHHHHHHHHHh
Confidence            655778889999999999998788888888888888776654433 334444444443

>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length

Probab=95.21  E-value=2.1  Score=38.05  Aligned_cols=202  Identities=19%  Similarity=0.169  Sum_probs=116.2

Q ss_pred             HHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHH
Q 011328           75 VPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLV  154 (488)
Q Consensus        75 i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~  154 (488)
                      ++.|+.-+....+++.+...+..|..++........     -++..+..+.+.+..+.+..+.+.+..+...++...   
T Consensus         2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~-----~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f---   73 (234)
T PF12530_consen    2 LPLLLYKLGKISDPELQLPLLEALPSLACHKNVCVP-----PVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF---   73 (234)
T ss_pred             hHHHHHHhcCCCChHHHHHHHHHHHHHhccCccchh-----HHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH---
Confidence            344555344443489999999999999984412222     235677777777777777788888888876554321   


Q ss_pred             HhcCChHHHHHHh---------cccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhh-ccCChhHHHHHHHHH
Q 011328          155 LSNGALMPLLAQF---------NEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLI-HSNDDEVLTDACWAL  224 (488)
Q Consensus       155 ~~~~~l~~L~~ll---------~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll-~~~~~~v~~~al~~L  224 (488)
                         +.+..++..+         ..+...+.......++..+|...|.    .-...++.+..++ ++.++.++..++.++
T Consensus        74 ---~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale~l  146 (234)
T PF12530_consen   74 ---PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALEAL  146 (234)
T ss_pred             ---HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence               2344444331         1122334445556778888887755    5567788888888 788899999999999


Q ss_pred             HHhccCCchhHHHHHHhCCHHHHHHhcCCC-CcchHhHHHHHHhHhhcCCch-hhHHHhhCCChHHHHHHhccc
Q 011328          225 SYLSDGTNDKIQAVIEAGVCPRLVELLRHP-SPSVLIPALRTVGNIVTGDDM-QTQCIINHQALPCLLDLLTQN  296 (488)
Q Consensus       225 ~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~~~~~L~~lL~~~  296 (488)
                      ..++...--.   +  ......+.+-+..+ .|.+....+..+..+....-+ .........++..+.++..+.
T Consensus       147 ~~Lc~~~vvd---~--~s~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~  215 (234)
T PF12530_consen  147 APLCEAEVVD---F--YSAWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSS  215 (234)
T ss_pred             HHHHHHhhcc---H--HHHHHHHHHhcCCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhcccc
Confidence            9999432111   1  12334444445333 344444333333333222111 111123334555666665555

>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]

Probab=95.16  E-value=5.1  Score=42.16  Aligned_cols=150  Identities=12%  Similarity=0.100  Sum_probs=97.8

Q ss_pred             hhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC-ChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHh
Q 011328          299 KSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA-EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCD  377 (488)
Q Consensus       299 ~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~  377 (488)
                      +.++..+..++++++.......+     ..+|.|++-|+.. ...+|.+...+++.++..-     ..+.+ ..++.+..
T Consensus       945 ~~vra~~vvTlakmcLah~~LaK-----r~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~Y-----Tam~d-~YiP~I~~ 1013 (1529)
T KOG0413|consen  945 DKVRAVGVVTLAKMCLAHDRLAK-----RLMPMLVKELEYNTAHAIRNNIVLAMGDICSSY-----TAMTD-RYIPMIAA 1013 (1529)
T ss_pred             hHHHHHHHHHHHHHHhhhhHHHH-----HHHHHHHHHHHhhhHHHHhcceeeeehhhHHHH-----HHHHH-HhhHHHHH
Confidence            45778888889999875444322     3678888877765 5678888888888776532     11222 57899999


Q ss_pred             hcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCC
Q 011328          378 LLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVEEDE  457 (488)
Q Consensus       378 ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~~~  457 (488)
                      .|.++++-++.+++-.|.+++..+---           |+..+    .++-+.. +-+.+++++..|...+......++.
T Consensus      1014 ~L~Dp~~iVRrqt~ilL~rLLq~~~vK-----------w~G~L----f~Rf~l~-l~D~~edIr~~a~f~~~~vL~~~~P 1077 (1529)
T KOG0413|consen 1014 SLCDPSVIVRRQTIILLARLLQFGIVK-----------WNGEL----FIRFMLA-LLDANEDIRNDAKFYISEVLQSEEP 1077 (1529)
T ss_pred             HhcCchHHHHHHHHHHHHHHHhhhhhh-----------cchhh----HHHHHHH-HcccCHHHHHHHHHHHHHHHhhcCc
Confidence            999999999999999999998654311           11111    1222222 3445789999999888888876543


Q ss_pred             CCCCCCCCCCCCccccCCCC
Q 011328          458 DEPLPPGDATQAGFGFAGNG  477 (488)
Q Consensus       458 ~~~~~~~~~~~~~~~~~~~~  477 (488)
                        .+++----|.+|-||+-|
T Consensus      1078 --~~f~~~FVe~i~~ln~~~ 1095 (1529)
T KOG0413|consen 1078 --NFFPLNFVEYIIALNQAR 1095 (1529)
T ss_pred             --cchHHHHHHHHHHHHHHH
Confidence              111111124566666654

>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]

Probab=95.00  E-value=2.2  Score=40.93  Aligned_cols=231  Identities=12%  Similarity=0.104  Sum_probs=133.4

Q ss_pred             HHHhhcCCCChhHHHHHHHHHHHhcCCC---chhhHHHHhCCCHHHHHHhhCC-------CCHHHHHHHHHHHhhhhCCC
Q 011328           78 FIEFLSRDDFPQLQFEAAWALTNIASGT---SENTRVVIDHGAVPIFVRLLSS-------PTDDVREQAVWALGNVAGDS  147 (488)
Q Consensus        78 L~~lL~~~~~~~v~~~a~~~L~~l~~~~---~~~~~~~~~~g~i~~L~~~L~~-------~~~~v~~~a~~~L~~l~~~~  147 (488)
                      +..+++..+ ++-|..|+......+...   ..+++.+++.=+.+.+-+++.+       ++.-.+..++.+|..+|++.
T Consensus        16 ~~~L~~~k~-D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~p   94 (698)
T KOG2611|consen   16 CLKLLKGKR-DEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVP   94 (698)
T ss_pred             HHHHhcccC-hHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCCh
Confidence            555666666 688889999999998833   3456667788778888888876       23456777888888888765


Q ss_pred             chh-HHHHHhcCChHHHHHHhcccccHh------HHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHH-
Q 011328          148 PKC-RDLVLSNGALMPLLAQFNEHAKLS------MLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTD-  219 (488)
Q Consensus       148 ~~~-~~~~~~~~~l~~L~~ll~~~~~~~------v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~-  219 (488)
                      .-. .+.++  +.++.+.+.+.+..|++      +...+..+|..++...+........|.++.+.++-.-++...-.. 
T Consensus        95 ElAsh~~~v--~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~~~~~~d~al  172 (698)
T KOG2611|consen   95 ELASHEEMV--SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYELPDGSHDMAL  172 (698)
T ss_pred             hhccCHHHH--HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhCCCCchhHHH
Confidence            321 12232  25778888875544444      788888999999988777777888999999998766443222111 


Q ss_pred             HHHHHHHhcc---CCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCch------hhHHHhhCCChHHHH
Q 011328          220 ACWALSYLSD---GTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDM------QTQCIINHQALPCLL  290 (488)
Q Consensus       220 al~~L~~l~~---~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~------~~~~~~~~~~~~~L~  290 (488)
                      ++.++.-...   .-++....+..  ++..+..-+...+...+...+..|..+......      .+..........-+.
T Consensus       173 al~Vlll~~~~~~cw~e~~~~fla--li~~va~df~~~~~a~KfElc~lL~~vl~~~~~e~~~~pl~~~~w~~~l~~G~~  250 (698)
T KOG2611|consen  173 ALKVLLLLVSKLDCWSETIERFLA--LIAAVARDFAVLHNALKFELCHLLSAVLSSEYSELLHEPLRSMNWADYLRTGVV  250 (698)
T ss_pred             HHHHHHHHHHhcccCcCCHHHHHH--HHHHHHHHHHHhhhHHHHHHHHHHHHHHhCChHHhccChhhhcchHHHHHHHHH
Confidence            2222211111   11111121211  133333333334456677788888755442221      110111112233355


Q ss_pred             HHhcccchhhHHHHHHHHHHHHh
Q 011328          291 DLLTQNYKKSIKKEACWTISNIT  313 (488)
Q Consensus       291 ~lL~~~~~~~v~~~a~~~L~nl~  313 (488)
                      .+|++.-.+.-|..|+....|+.
T Consensus       251 ~IL~~kv~p~qr~pAL~Laa~~~  273 (698)
T KOG2611|consen  251 AILQNKVAPSQRLPALILAANMM  273 (698)
T ss_pred             HHHhcccCchhcChHHHHHHHHH
Confidence            56655544555555665555554

>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D

Probab=94.99  E-value=1.6  Score=41.76  Aligned_cols=275  Identities=17%  Similarity=0.168  Sum_probs=138.8

Q ss_pred             HHHHHHhhC-CCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHh-hcCCCCCCh
Q 011328          118 VPIFVRLLS-SPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNF-CRGKPQPLF  195 (488)
Q Consensus       118 i~~L~~~L~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l-~~~~~~~~~  195 (488)
                      +..++.-+. +.+..+|..++--|+.-+.+ +.++..+...|....+++.+....+..+...+..++..+ +.+......
T Consensus        23 v~ylld~l~~~~~~s~Rr~sll~La~K~~~-~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l  101 (361)
T PF07814_consen   23 VEYLLDGLESSSSSSVRRSSLLELASKCAD-PQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHL  101 (361)
T ss_pred             HHHHHhhcccCCCccHHHHHHHHHHHHhCC-HHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhh
Confidence            455555555 35678898888888888875 558999999999999999995555543555555555444 444344444


Q ss_pred             hhhhchHHHHHHhhccC-ChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhc---------CCCCcchHhHHHHH
Q 011328          196 EQTRPALPALERLIHSN-DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL---------RHPSPSVLIPALRT  265 (488)
Q Consensus       196 ~~~~~~~~~l~~ll~~~-~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL---------~~~~~~v~~~a~~~  265 (488)
                      .........+..++... ...+....-      . ..........+ ..+..+...+         ......-+..|+.+
T Consensus       102 ~~~~~~~~ll~~Ll~~~~~~~~~~~~~------~-~~~~~lsk~~~-~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall~  173 (361)
T PF07814_consen  102 LLDRDSLRLLLKLLKVDKSLDVPSDSD------S-SRKKNLSKVQQ-KSRSLCKELLSSGSSWKSPKPPELSPQTLALLA  173 (361)
T ss_pred             hhchhHHHHHHHHhccccccccccchh------h-hhhhhhhHHHH-HHHHHHHHHHhccccccccCCcccccccHHHHH
Confidence            44455666667777611 000000000      0 00000010110 1111111221         01223345556666


Q ss_pred             HhHhhcC--------------CchhhHHHhhCCChHHHHHHhcc----cc-----------hhhHHHHHHHHHHHHhcCC
Q 011328          266 VGNIVTG--------------DDMQTQCIINHQALPCLLDLLTQ----NY-----------KKSIKKEACWTISNITAGN  316 (488)
Q Consensus       266 L~~l~~~--------------~~~~~~~~~~~~~~~~L~~lL~~----~~-----------~~~v~~~a~~~L~nl~~~~  316 (488)
                      +-.++..              .+.....+.+.|+++.+++++..    ..           +...-..++.+|-|.+..+
T Consensus       174 le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~~  253 (361)
T PF07814_consen  174 LESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFLS  253 (361)
T ss_pred             HHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhcC
Confidence            6555311              11123344456778888888752    10           1122345667777777655


Q ss_pred             HHHHHHHHH--cCChHHHHHHH----hcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhc-------C---
Q 011328          317 VNQIQAIIE--AGIIGPLVNLL----LNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLL-------N---  380 (488)
Q Consensus       317 ~~~~~~l~~--~~~l~~L~~ll----~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll-------~---  380 (488)
                      .++..++..  .+.++.+...+    ..........+++.+.|++-+. ++....+...++...+..+.       .   
T Consensus       254 ~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n-~~~c~~~~s~~l~~~~~~i~~~~~~~~~~~~  332 (361)
T PF07814_consen  254 EENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNN-PSACEEFASPKLGQQLGLIVTSFFCVLSLPN  332 (361)
T ss_pred             ccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCC-ccchHhhhhhHhccchHHHHHhhcccccccc
Confidence            555555443  22333333322    2223444677888888987543 34444444433322221111       1   


Q ss_pred             ----CCCHHHHHHHHHHHHHHHHhhh
Q 011328          381 ----CPDPRIVTVCLEGLENILKAGE  402 (488)
Q Consensus       381 ----~~~~~v~~~al~~L~~l~~~~~  402 (488)
                          ...-++...++.++.|+++..+
T Consensus       333 ~~~~~~~~D~~IL~Lg~LINL~E~s~  358 (361)
T PF07814_consen  333 YVPEESSFDILILALGLLINLVEHSE  358 (361)
T ss_pred             cccccccchHHHHHHHhHHHheeeCc
Confidence                1123566667777777766544

melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.

>PF13251 DUF4042: Domain of unknown function (DUF4042)

Probab=94.96  E-value=0.68  Score=39.01  Aligned_cols=144  Identities=17%  Similarity=0.133  Sum_probs=93.9

Q ss_pred             hHHHHHHHHHHHhcCC-Cch----hhHHHHh------CCCHHHH-HHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHh
Q 011328           89 QLQFEAAWALTNIASG-TSE----NTRVVID------HGAVPIF-VRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLS  156 (488)
Q Consensus        89 ~v~~~a~~~L~~l~~~-~~~----~~~~~~~------~g~i~~L-~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~  156 (488)
                      ++|..|+.+|..++.. ++.    ....++-      .+.-+.| .-++.++++.+|..|+.++..+..+...+-....+
T Consensus         1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~   80 (182)
T PF13251_consen    1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEE   80 (182)
T ss_pred             ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHh
Confidence            3677888888888874 211    1112221      1123333 44567789999999999999987654322111111


Q ss_pred             cC-------------------ChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCC--hhhhhchHHHHHHhhccCChh
Q 011328          157 NG-------------------ALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPL--FEQTRPALPALERLIHSNDDE  215 (488)
Q Consensus       157 ~~-------------------~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~--~~~~~~~~~~l~~ll~~~~~~  215 (488)
                      ..                   .-..|+..+....+..+....+.++..+....|..+  ......++..+..++.+.|.+
T Consensus        81 ~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~  160 (182)
T PF13251_consen   81 SKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPN  160 (182)
T ss_pred             cCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCc
Confidence            11                   123345555556678888899999999998875443  334566777777888899999


Q ss_pred             HHHHHHHHHHHhccCCc
Q 011328          216 VLTDACWALSYLSDGTN  232 (488)
Q Consensus       216 v~~~al~~L~~l~~~~~  232 (488)
                      ++..++.+++.+....+
T Consensus       161 v~v~~l~~~~~l~s~~~  177 (182)
T PF13251_consen  161 VRVAALSCLGALLSVQP  177 (182)
T ss_pred             HHHHHHHHHHHHHcCCC
Confidence            99999999998876543

>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=94.92  E-value=4.4  Score=40.15  Aligned_cols=110  Identities=20%  Similarity=0.183  Sum_probs=80.8

Q ss_pred             hhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCc
Q 011328          195 FEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDD  274 (488)
Q Consensus       195 ~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~  274 (488)
                      ...+.+.+..+++.+.+++..|+..++..|..++..-.+. ...+-.+++..|.+-+-+..+.||..|+.+|+.+-....
T Consensus        86 ~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eI-De~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~  164 (885)
T COG5218          86 EELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREI-DEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMEL  164 (885)
T ss_pred             hHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchH-HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccC
Confidence            4566788888888888999999999999999888655432 334445778888888878888999999999988754322


Q ss_pred             hhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHH
Q 011328          275 MQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTIS  310 (488)
Q Consensus       275 ~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~  310 (488)
                      ..     +..+...+..+++...+.+||+.|+.-+.
T Consensus       165 ne-----en~~~n~l~~~vqnDPS~EVRr~allni~  195 (885)
T COG5218         165 NE-----ENRIVNLLKDIVQNDPSDEVRRLALLNIS  195 (885)
T ss_pred             Ch-----HHHHHHHHHHHHhcCcHHHHHHHHHHHee
Confidence            11     12344567788877668899988765443

>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5

Probab=94.86  E-value=0.19  Score=34.97  Aligned_cols=67  Identities=16%  Similarity=0.228  Sum_probs=52.0

Q ss_pred             HhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcC
Q 011328          259 LIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAG  327 (488)
Q Consensus       259 ~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~  327 (488)
                      .+.|++++++++. .+.....+.+.++++.++++..+.+...+|-.+.++|+-++.. .+..+.+-+.|
T Consensus         4 lKaaLWaighIgs-s~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T-~~G~~~L~~~g   70 (73)
T PF14668_consen    4 LKAALWAIGHIGS-SPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISST-EEGAEILDELG   70 (73)
T ss_pred             HHHHHHHHHhHhc-ChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCC-HHHHHHHHHcC
Confidence            4689999999988 4445555667799999999998776889999999999999875 55455444443

>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]

Probab=94.85  E-value=1.3  Score=43.18  Aligned_cols=158  Identities=11%  Similarity=0.118  Sum_probs=113.3

Q ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCC---hhHHHHHHHHHHHhcCCCch
Q 011328           31 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDF---PQLQFEAAWALTNIASGTSE  107 (488)
Q Consensus        31 ~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~---~~v~~~a~~~L~~l~~~~~~  107 (488)
                      ....+.+.+.+++...+..+...+..+.. + ......++...++..|.+++.+++.   .++...+++++..+....--
T Consensus        84 ~a~~i~e~l~~~~~~~~~~a~k~l~sls~-d-~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvv  161 (713)
T KOG2999|consen   84 YAKRIMEILTEGNNISKMEALKELDSLSL-D-PTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVV  161 (713)
T ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHhhccc-c-HHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhcee
Confidence            34578889999999999888888888543 3 5678899999999999999988762   45666667777666553221


Q ss_pred             hhHHHHhCCCHHHHHHhhC--CCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHH
Q 011328          108 NTRVVIDHGAVPIFVRLLS--SPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSN  185 (488)
Q Consensus       108 ~~~~~~~~g~i~~L~~~L~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~  185 (488)
                      ... .+...++.....+..  ..+..+-..|+..|-++...++..+..+.+.-.+..++..+ +..+..++..|...+..
T Consensus       162 sW~-~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hl-q~~n~~i~~~aial~na  239 (713)
T KOG2999|consen  162 SWE-SVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHL-QVSNQRIQTCAIALLNA  239 (713)
T ss_pred             eee-ecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHH-HhcchHHHHHHHHHHHH
Confidence            111 112233444444432  25667778889999999888877788888888899999999 77788888888888877


Q ss_pred             hhcCCCC
Q 011328          186 FCRGKPQ  192 (488)
Q Consensus       186 l~~~~~~  192 (488)
                      +....+.
T Consensus       240 l~~~a~~  246 (713)
T KOG2999|consen  240 LFRKAPD  246 (713)
T ss_pred             HHhhCCh
Confidence            7765533

>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []

Probab=94.79  E-value=0.77  Score=47.72  Aligned_cols=199  Identities=16%  Similarity=0.115  Sum_probs=108.8

Q ss_pred             CHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCC----CCHHHHHHHHHHHhhhhC----
Q 011328           74 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS----PTDDVREQAVWALGNVAG----  145 (488)
Q Consensus        74 ~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~----~~~~v~~~a~~~L~~l~~----  145 (488)
                      .+..+.+++.+.. .. -..|...+..+.......-.     ..+..+..+++.    .++.++..|+.+++.+..    
T Consensus       396 av~~i~~~I~~~~-~~-~~ea~~~l~~l~~~~~~Pt~-----e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~  468 (618)
T PF01347_consen  396 AVKFIKDLIKSKK-LT-DDEAAQLLASLPFHVRRPTE-----ELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCV  468 (618)
T ss_dssp             HHHHHHHHHHTT--S--HHHHHHHHHHHHHT-----H-----HHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCC-CC-HHHHHHHHHHHHhhcCCCCH-----HHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceee
Confidence            4555666666644 11 22344445444432212222     235566666654    567888888888888752    


Q ss_pred             CC-----chhHHHHHhcCChHHHHHHhc---ccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccC---Ch
Q 011328          146 DS-----PKCRDLVLSNGALMPLLAQFN---EHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSN---DD  214 (488)
Q Consensus       146 ~~-----~~~~~~~~~~~~l~~L~~ll~---~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~---~~  214 (488)
                      ..     ............++.+...+.   ...+..-+..++.+|+|+...          ..++.+..++...   ..
T Consensus       469 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~~----------~~i~~l~~~i~~~~~~~~  538 (618)
T PF01347_consen  469 NSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGHP----------ESIPVLLPYIEGKEEVPH  538 (618)
T ss_dssp             T-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-G----------GGHHHHHTTSTTSS-S-H
T ss_pred             cccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCCc----------hhhHHHHhHhhhccccch
Confidence            21     000011122235666666664   234557778899999998643          5778888888765   68


Q ss_pred             hHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCC--CCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHH
Q 011328          215 EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH--PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDL  292 (488)
Q Consensus       215 ~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~l  292 (488)
                      .+|..|++++..+....++..        .+.+++++.+  .++++|..|+..|...   +|..       ..+..+...
T Consensus       539 ~~R~~Ai~Alr~~~~~~~~~v--------~~~l~~I~~n~~e~~EvRiaA~~~lm~~---~P~~-------~~l~~i~~~  600 (618)
T PF01347_consen  539 FIRVAAIQALRRLAKHCPEKV--------REILLPIFMNTTEDPEVRIAAYLILMRC---NPSP-------SVLQRIAQS  600 (618)
T ss_dssp             HHHHHHHHTTTTGGGT-HHHH--------HHHHHHHHH-TTS-HHHHHHHHHHHHHT------H-------HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhcCcHHH--------HHHHHHHhcCCCCChhHHHHHHHHHHhc---CCCH-------HHHHHHHHH
Confidence            889999999998876655332        2566666654  4567888887766442   2322       235567777


Q ss_pred             hcccchhhHHHHHHH
Q 011328          293 LTQNYKKSIKKEACW  307 (488)
Q Consensus       293 L~~~~~~~v~~~a~~  307 (488)
                      +..+.+..|......
T Consensus       601 l~~E~~~QV~sfv~S  615 (618)
T PF01347_consen  601 LWNEPSNQVASFVYS  615 (618)
T ss_dssp             HTT-S-HHHHHHHHH
T ss_pred             HhhCchHHHHHHHHH
Confidence            766646666555443

Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=94.76  E-value=5.2  Score=41.77  Aligned_cols=175  Identities=15%  Similarity=0.189  Sum_probs=110.3

Q ss_pred             HHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCC--HHHHHHHHHcCChHHHHHHHhcCCh-
Q 011328          265 TVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGN--VNQIQAIIEAGIIGPLVNLLLNAEF-  341 (488)
Q Consensus       265 ~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~--~~~~~~l~~~~~l~~L~~ll~~~~~-  341 (488)
                      ++++++..++...+.+++.+++..+...++.-....++..+...+.|++...  .+......... ...+..++...+. 
T Consensus       494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~-~~~f~~~~~~w~~~  572 (699)
T KOG3665|consen  494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFID-FSVFKVLLNKWDSI  572 (699)
T ss_pred             HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHH-HHHHHHHHhhcchh
Confidence            8889999999999999999999999999986557789999999999999732  12111111111 1223333333333 


Q ss_pred             hHHHHHHHHHHHhccCCCH-------H-HHHHHHH--------------CCChHH-HHhhcCC-CCHHHHHHHHHHHHHH
Q 011328          342 EIKKEAAWAISNATSGGSN-------E-QIKFLVS--------------QGCIKP-LCDLLNC-PDPRIVTVCLEGLENI  397 (488)
Q Consensus       342 ~v~~~a~~aL~~l~~~~~~-------~-~~~~l~~--------------~~~i~~-L~~ll~~-~~~~v~~~al~~L~~l  397 (488)
                      +.-..|+..|+.+...++.       + ....+.+              ...+.. +.+++.. ..+..+..|++++.++
T Consensus       573 ersY~~~siLa~ll~~~~~~~~~~~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~~s~~~g~~lWal~ti~~~  652 (699)
T KOG3665|consen  573 ERSYNAASILALLLSDSEKTTECVFRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILRLSKSDGSQLWALWTIKNV  652 (699)
T ss_pred             hHHHHHHHHHHHHHhCCCcCccccchHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhcccCCCchHHHHHHHHHHH
Confidence            6777788888888775321       0 0111110              111222 4344442 3345667788888888


Q ss_pred             HHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhc-CCCHHHHHHHHHHHHHhc
Q 011328          398 LKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQS-HDNTEIYEKAVKILETYW  452 (488)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~-~~~~~v~~~a~~~l~~~~  452 (488)
                      +....+            +.....+.|++..+.++.. +...+++..+..++....
T Consensus       653 ~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  696 (699)
T KOG3665|consen  653 LEQNKE------------YCKLVRESNGFELIENIRVLSEVVDVKEEAVLVIESCE  696 (699)
T ss_pred             HHcChh------------hhhhhHhccchhhhhhcchhHHHHHHHHHHHHHhhccc
Confidence            766553            4677788888888888742 235667777777766543

>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing

Probab=94.74  E-value=1.7  Score=41.66  Aligned_cols=197  Identities=16%  Similarity=0.221  Sum_probs=119.5

Q ss_pred             HHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCCh
Q 011328          135 QAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDD  214 (488)
Q Consensus       135 ~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~  214 (488)
                      .|+++|-.+....+..-..+.+.+++..++..+...-+.....   .-...-....+.......   +.  ...+.-...
T Consensus         3 ~av~~ld~~~~~~~~a~~~f~~~~G~~~li~rl~~Ev~~~~~~---~~~~~~~~~~~~~~~~~~---~~--~~~i~~~r~   74 (379)
T PF06025_consen    3 RAVRFLDTFIDSSPDAFAAFRNLNGLDILIDRLQYEVDFALEE---NKNEEAGSGIPPEYKESS---VD--GYSISYQRQ   74 (379)
T ss_pred             HHHHHHHHHHhccHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc---ccccCCCCCCCCCccccc---cc--ccccCHHHH
Confidence            4666777777666556677788999999999983221111110   000000011010000000   00  000000112


Q ss_pred             hHHHHHHHHHHHhcc---CCchhHHHHHH-hCCHHHHHHhcCCC---CcchHhHHHHHHhHhhcCCchhhHHHhhCCChH
Q 011328          215 EVLTDACWALSYLSD---GTNDKIQAVIE-AGVCPRLVELLRHP---SPSVLIPALRTVGNIVTGDDMQTQCIINHQALP  287 (488)
Q Consensus       215 ~v~~~al~~L~~l~~---~~~~~~~~~~~-~~~l~~L~~lL~~~---~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~  287 (488)
                      ......++++..+..   ......+.+++ ..++..|..++.+.   .+.+-..|+.++..+....|.....+.+.|+.+
T Consensus        75 ~llK~lLk~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~  154 (379)
T PF06025_consen   75 QLLKSLLKFLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLID  154 (379)
T ss_pred             HHHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChH
Confidence            333344444444444   33345555666 56677777777774   367888999999999998898888889999999


Q ss_pred             HHHHHhc-cc--chhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCC
Q 011328          288 CLLDLLT-QN--YKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAE  340 (488)
Q Consensus       288 ~L~~lL~-~~--~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~  340 (488)
                      .+++.+. ..  .+.++-...-.+++.+|-+ ....+.+.+.+.++.+++++.+++
T Consensus       155 ~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN-~~Gl~~~~~~~~l~~~f~if~s~~  209 (379)
T PF06025_consen  155 AFLDAITAKGILPSSEVLTSLPNVLSAICLN-NRGLEKVKSSNPLDKLFEIFTSPD  209 (379)
T ss_pred             HHHHHHhccCCCCcHHHHHHHHHHHhHHhcC-HHHHHHHHhcChHHHHHHHhCCHH
Confidence            9999887 32  2455555556667777665 667788888899999999988764

This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.

>KOG1949 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.49  E-value=0.94  Score=45.50  Aligned_cols=232  Identities=14%  Similarity=0.073  Sum_probs=137.1

Q ss_pred             HhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCC---CCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccC-
Q 011328          155 LSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK---PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDG-  230 (488)
Q Consensus       155 ~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~---~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~-  230 (488)
                      ++.+.++.++..-..-+...+....-..|+.+....   .....+...-.-|.+.+-|+-.|..|+..|+..+.+.-.- 
T Consensus       126 iE~d~iq~~~~haiha~rsp~~sk~r~Vl~~F~hqkk~~qgVeeml~rL~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~  205 (1005)
T KOG1949|consen  126 IENDCIQDFMFHAIHAPRSPVHSKVREVLSYFHHQKKVRQGVEEMLYRLYKPILWRGLKARNSEVRSNAALLFVEAFPIR  205 (1005)
T ss_pred             HhhhHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHhhccCchhhhhhHHHHHHHhccCC
Confidence            355667766665433333334444444555555433   1111222233445666777888999999999999987732 


Q ss_pred             -Cc---hhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhC----CChHHHHHHhcccchhhHH
Q 011328          231 -TN---DKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINH----QALPCLLDLLTQNYKKSIK  302 (488)
Q Consensus       231 -~~---~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~----~~~~~L~~lL~~~~~~~v~  302 (488)
                       ++   +.++.+++ +-...+.++|.++-+.+|..|..-+..+.+..-    .++..    .++..+.+-+......+||
T Consensus       206 dpd~~~e~mD~i~~-kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fW----e~iP~~i~~~ll~kI~d~~a~dt~s~VR  280 (1005)
T KOG1949|consen  206 DPDLHAEEMDSIIQ-KQFEELYSLLEDPYPMVRSTAILGVCKITSKFW----EMIPPTILIDLLKKITDELAFDTSSDVR  280 (1005)
T ss_pred             CCCccHHHHHHHHH-HHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHH----HHcCHHHHHHHHHHHHHHhhhccchhee
Confidence             21   22333444 345778999999999999998877766654221    22222    2333444434333356888


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCC
Q 011328          303 KEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCP  382 (488)
Q Consensus       303 ~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~  382 (488)
                      ......|..+... +. .-.+++ .++|.+-..+.++...||..+...|..+-...    ...+..---.+.++.-|+.+
T Consensus       281 ~svf~gl~~~l~n-p~-sh~~le-~~Lpal~~~l~D~se~VRvA~vd~ll~ik~vr----a~~f~~I~~~d~~l~~L~~d  353 (1005)
T KOG1949|consen  281 CSVFKGLPMILDN-PL-SHPLLE-QLLPALRYSLHDNSEKVRVAFVDMLLKIKAVR----AAKFWKICPMDHILVRLETD  353 (1005)
T ss_pred             hhHhcCcHHHHcC-cc-chhHHH-HHHHhcchhhhccchhHHHHHHHHHHHHHhhh----hhhhhccccHHHHHHHHhcc
Confidence            8888888877764 22 112233 25677777888888999999998888874322    12222223456666666766


Q ss_pred             CHHHHHHHHHHHHHHH
Q 011328          383 DPRIVTVCLEGLENIL  398 (488)
Q Consensus       383 ~~~v~~~al~~L~~l~  398 (488)
                      +.++....+..+.+.+
T Consensus       354 ~~~v~rr~~~li~~s~  369 (1005)
T KOG1949|consen  354 SRPVSRRLVSLIFNSF  369 (1005)
T ss_pred             ccHHHHHHHHHHHHhh
Confidence            6666555555554443

>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]

Probab=94.39  E-value=5.2  Score=38.62  Aligned_cols=131  Identities=11%  Similarity=0.078  Sum_probs=93.0

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHhccCCCcc--HHHHHHcCCHHHHHHhhcCCC----Ch--hHHHHHHHHHHHhcCC
Q 011328           33 PAMVAGVWSDDRNIQLDATTQFRKLLSIERSPP--INEVIQSGVVPRFIEFLSRDD----FP--QLQFEAAWALTNIASG  104 (488)
Q Consensus        33 ~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~--~~~~~~~~~i~~L~~lL~~~~----~~--~v~~~a~~~L~~l~~~  104 (488)
                      ..+..+++.++.+.|+.|+-...++..+.+-..  .+.+.+.-+++.+-+++.+.+    .+  -.+.-++.+|+..|. 
T Consensus        14 ~~~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~-   92 (698)
T KOG2611|consen   14 DDCLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCR-   92 (698)
T ss_pred             hhHHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhC-
Confidence            346677777888889999999999887653332  344667778888888886543    22  345566777888887 


Q ss_pred             Cchhh--HHHHhCCCHHHHHHhhCC-CCH------HHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHh
Q 011328          105 TSENT--RVVIDHGAVPIFVRLLSS-PTD------DVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQF  167 (488)
Q Consensus       105 ~~~~~--~~~~~~g~i~~L~~~L~~-~~~------~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll  167 (488)
                      .|+..  ..++  +-||.|..+++. .++      .+.+.+..+|..++...+. ...++..|+++.+.+.-
T Consensus        93 ~pElAsh~~~v--~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G-~~~Lia~G~~~~~~Q~y  161 (698)
T KOG2611|consen   93 VPELASHEEMV--SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAG-LMTLIASGGLRVIAQMY  161 (698)
T ss_pred             ChhhccCHHHH--HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCch-hHHHHhcCchHHHHHHH
Confidence            55543  3344  458999998875 333      3788899999999988665 45666779998888665

>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]

Probab=94.04  E-value=3.2  Score=45.85  Aligned_cols=148  Identities=16%  Similarity=0.175  Sum_probs=91.6

Q ss_pred             CCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHH
Q 011328          242 GVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQ  321 (488)
Q Consensus       242 ~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~  321 (488)
                      +++|.|..-|.+++..+|..|...++.+......+.. --........+.-+.+. +..+|.+++....++...++....
T Consensus       259 ~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~-~~~~~~~~~fl~r~~D~-~~~vR~~~v~~~~~~l~~~~~~~~  336 (1266)
T KOG1525|consen  259 AVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLS-ETYDDLWSAFLGRFNDI-SVEVRMECVESIKQCLLNNPSIAK  336 (1266)
T ss_pred             HHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhc-ccchHHHHHHHHHhccC-ChhhhhhHHHHhHHHHhcCchhhh
Confidence            7888888889999999999999999999875443322 00123455566666677 888999999999888776555333


Q ss_pred             HHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHh
Q 011328          322 AIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKA  400 (488)
Q Consensus       322 ~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~  400 (488)
                      ...   ....+..  .+.|++++.....++....   -......+... .+..+.+.+.+....||..|+..|..+...
T Consensus       337 ~~~---~~~~l~~--~~~D~~~rir~~v~i~~~~---v~~~~l~~~~~-ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~  406 (1266)
T KOG1525|consen  337 AST---ILLALRE--RDLDEDVRVRTQVVIVACD---VMKFKLVYIPL-LLKLVAERLRDKKIKVRKQAMNGLAQLYKN  406 (1266)
T ss_pred             HHH---HHHHHHh--hcCChhhhheeeEEEEEee---hhHhhhhhhHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence            221   1222221  2234444433222221111   11222233333 566666677788899999999988888763

>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []

Probab=94.00  E-value=5.6  Score=37.53  Aligned_cols=157  Identities=18%  Similarity=0.164  Sum_probs=112.1

Q ss_pred             HHHHHHhcCCCCcchHhHHHHHHhHhhc-CCchhhHHHhhC-C-ChHHHHHHhcccc----h--------hhHHHHHHHH
Q 011328          244 CPRLVELLRHPSPSVLIPALRTVGNIVT-GDDMQTQCIINH-Q-ALPCLLDLLTQNY----K--------KSIKKEACWT  308 (488)
Q Consensus       244 l~~L~~lL~~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~-~-~~~~L~~lL~~~~----~--------~~v~~~a~~~  308 (488)
                      +..+...|....+.+...++..|..++. ......+.+... + -.+.+.+++....    .        +.+|...+..
T Consensus        58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F  137 (330)
T PF11707_consen   58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF  137 (330)
T ss_pred             HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence            7788888988888888999999999998 554566666532 1 2234455552220    1        2788888877


Q ss_pred             HHHHhc-CCHHHHHHHHH-cCChHHHHHHHhcCChhHHHHHHHHHHH-hccCC--CHHHHHHHHHCCChHHHHhhcCCCC
Q 011328          309 ISNITA-GNVNQIQAIIE-AGIIGPLVNLLLNAEFEIKKEAAWAISN-ATSGG--SNEQIKFLVSQGCIKPLCDLLNCPD  383 (488)
Q Consensus       309 L~nl~~-~~~~~~~~l~~-~~~l~~L~~ll~~~~~~v~~~a~~aL~~-l~~~~--~~~~~~~l~~~~~i~~L~~ll~~~~  383 (488)
                      +..+.. +++..+..+++ .+.+..+.+-+..+++++....+.+|.. +....  .+.....+.....+..|..+....+
T Consensus       138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~  217 (330)
T PF11707_consen  138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRDG  217 (330)
T ss_pred             HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcccC
Confidence            666665 66777777665 5678888888888888999999999985 44322  2344455566678899999888877


Q ss_pred             H----HHHHHHHHHHHHHHHh
Q 011328          384 P----RIVTVCLEGLENILKA  400 (488)
Q Consensus       384 ~----~v~~~al~~L~~l~~~  400 (488)
                      +    .+.+.+-+.|..++..
T Consensus       218 ~~~~~~~~~~vh~fL~~lcT~  238 (330)
T PF11707_consen  218 EDEKSSVADLVHEFLLALCTD  238 (330)
T ss_pred             CcccchHHHHHHHHHHHHhcC
Confidence            7    8888888888888753

The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=94.00  E-value=8  Score=39.34  Aligned_cols=205  Identities=17%  Similarity=0.198  Sum_probs=122.7

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh
Q 011328           30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT  109 (488)
Q Consensus        30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~  109 (488)
                      +.+..+++...+.+..+|.+++..|..+.. + ...++..+-.+....+..-+.+.. +.||.+|+.+|..+-.+..+- 
T Consensus        85 ~~f~hlLRg~Eskdk~VRfrvlqila~l~d-~-~~eidd~vfn~l~e~l~~Rl~Dre-p~VRiqAv~aLsrlQ~d~~de-  160 (892)
T KOG2025|consen   85 GTFYHLLRGTESKDKKVRFRVLQILALLSD-E-NAEIDDDVFNKLNEKLLIRLKDRE-PNVRIQAVLALSRLQGDPKDE-  160 (892)
T ss_pred             HHHHHHHhcccCcchhHHHHHHHHHHHHhc-c-ccccCHHHHHHHHHHHHHHHhccC-chHHHHHHHHHHHHhcCCCCC-
Confidence            567778888889999999999999999764 3 344555555667777777778888 899999999999998522111 


Q ss_pred             HHHHhCCCHHHHHHhhCC-CCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHH-HHHHHhh
Q 011328          110 RVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNAT-WTLSNFC  187 (488)
Q Consensus       110 ~~~~~~g~i~~L~~~L~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~-~~L~~l~  187 (488)
                          +..+...+..++++ +++++|..|+.   +++-++.          ..+.++... ++-+...++-+- .++-.+ 
T Consensus       161 ----e~~v~n~l~~liqnDpS~EVRRaaLs---nI~vdns----------Tlp~IveRa-rDV~~anRrlvY~r~lpki-  221 (892)
T KOG2025|consen  161 ----ECPVVNLLKDLIQNDPSDEVRRAALS---NISVDNS----------TLPCIVERA-RDVSGANRRLVYERCLPKI-  221 (892)
T ss_pred             ----cccHHHHHHHHHhcCCcHHHHHHHHH---hhccCcc----------cchhHHHHh-hhhhHHHHHHHHHHhhhhh-
Confidence                22456778888876 88999998655   4443322          234444444 333333333222 112111 


Q ss_pred             cCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCC-CCcchHhHHHHHH
Q 011328          188 RGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH-PSPSVLIPALRTV  266 (488)
Q Consensus       188 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-~~~~v~~~a~~~L  266 (488)
                          ..........+..+-..+.+.+..++..+...|..=.      .. ..+ |=+.-++.-++- .+.+++..++.++
T Consensus       222 ----d~r~lsi~krv~LlewgLnDRe~sVk~A~~d~il~~W------l~-~~d-gni~ElL~~ldvsnss~vavk~leal  289 (892)
T KOG2025|consen  222 ----DLRSLSIDKRVLLLEWGLNDREFSVKGALVDAILSGW------LR-FSD-GNILELLERLDVSNSSEVAVKALEAL  289 (892)
T ss_pred             ----hhhhhhHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH------hh-hcc-ccHHHHHHHhccccchHHHHHHHHHH
Confidence                1112222333444445555666777777766665411      11 112 333344444543 4457888888887


Q ss_pred             hHh
Q 011328          267 GNI  269 (488)
Q Consensus       267 ~~l  269 (488)
                      -..
T Consensus       290 f~~  292 (892)
T KOG2025|consen  290 FSG  292 (892)
T ss_pred             HHH
Confidence            664

>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=93.93  E-value=4.4  Score=38.73  Aligned_cols=147  Identities=14%  Similarity=0.086  Sum_probs=90.7

Q ss_pred             HHHhCCHHHHHHhcCC-CCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhc----c-cchhhHHHHHHHHHHH
Q 011328          238 VIEAGVCPRLVELLRH-PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLT----Q-NYKKSIKKEACWTISN  311 (488)
Q Consensus       238 ~~~~~~l~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~----~-~~~~~v~~~a~~~L~n  311 (488)
                      +.+.+-.+.+-.-+.. ....-|.+|+..+..++...+.....++    ...+..++.    + ..+++-|..|+..++.
T Consensus       206 lfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~----~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~a  281 (370)
T PF08506_consen  206 LFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSIL----MQYIQQLLQQYASNPSNNWRSKDGALYLIGA  281 (370)
T ss_dssp             HHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH-TTT-HHHHHHHHHHHHH
T ss_pred             HHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHhhCCcccHHHHHHHHHHHHH
Confidence            5555666666665654 3356778899999999875444333222    233444443    1 2266788899999999


Q ss_pred             HhcCCHH------------HHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhc
Q 011328          312 ITAGNVN------------QIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLL  379 (488)
Q Consensus       312 l~~~~~~------------~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll  379 (488)
                      ++.....            ....++...++|.|. --.+..+-++-.|++.+..+-..-+++....     +++.+++.|
T Consensus       282 la~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~~~l~~-----~~~~l~~~L  355 (370)
T PF08506_consen  282 LASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPKEQLLQ-----IFPLLVNHL  355 (370)
T ss_dssp             HHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-HHHHHH-----HHHHHHHHT
T ss_pred             HHhhhccccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCHHHHHH-----HHHHHHHHh
Confidence            9874211            344555666777765 1123366788899999999977665544333     799999999


Q ss_pred             CCCCHHHHHHHHHHH
Q 011328          380 NCPDPRIVTVCLEGL  394 (488)
Q Consensus       380 ~~~~~~v~~~al~~L  394 (488)
                      .+++.-+...|..++
T Consensus       356 ~~~~~vv~tyAA~~i  370 (370)
T PF08506_consen  356 QSSSYVVHTYAAIAI  370 (370)
T ss_dssp             TSS-HHHHHHHHHHH
T ss_pred             CCCCcchhhhhhhhC
Confidence            999988887776553

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.

>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]

Probab=93.91  E-value=1.8  Score=42.32  Aligned_cols=156  Identities=13%  Similarity=0.127  Sum_probs=114.8

Q ss_pred             HHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccc---cHhHHHHHHHHHHHhhcCCCCCC
Q 011328          118 VPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHA---KLSMLRNATWTLSNFCRGKPQPL  194 (488)
Q Consensus       118 i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~---~~~v~~~a~~~L~~l~~~~~~~~  194 (488)
                      ...+.+.+.+++..-+..++..+..++.+.. +...++...++..|.+++.+..   ...+....+.+++.+-...-...
T Consensus        85 a~~i~e~l~~~~~~~~~~a~k~l~sls~d~~-fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW  163 (713)
T KOG2999|consen   85 AKRIMEILTEGNNISKMEALKELDSLSLDPT-FAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSW  163 (713)
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHHhhccccHH-HHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeee
Confidence            3566677778888888778889999887654 6677788888999999885433   45677777788877776654333


Q ss_pred             hhhhhchHHHHHHhhc--cCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcC
Q 011328          195 FEQTRPALPALERLIH--SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTG  272 (488)
Q Consensus       195 ~~~~~~~~~~l~~ll~--~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~  272 (488)
                      ......++..+..+..  ..+..+...|+..+-++...++...+.+.+.--+..++..+...+..++..|+..+..+...
T Consensus       164 ~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~~~  243 (713)
T KOG2999|consen  164 ESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALFRK  243 (713)
T ss_pred             eecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHHhh
Confidence            3333445555555543  34677888999999999988877777788878899999999998888888888888777765


Q ss_pred             Cc
Q 011328          273 DD  274 (488)
Q Consensus       273 ~~  274 (488)
                      .+
T Consensus       244 a~  245 (713)
T KOG2999|consen  244 AP  245 (713)
T ss_pred             CC
Confidence            44

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=93.78  E-value=1.1  Score=38.29  Aligned_cols=111  Identities=10%  Similarity=0.130  Sum_probs=75.4

Q ss_pred             CCHHHHHHhhcCCCChhHHHHHHHHHHHhcC-CCchhhHHHHhCCCHHHHHHhhCC---------CCHHHHHHHHHHHhh
Q 011328           73 GVVPRFIEFLSRDDFPQLQFEAAWALTNIAS-GTSENTRVVIDHGAVPIFVRLLSS---------PTDDVREQAVWALGN  142 (488)
Q Consensus        73 ~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~g~i~~L~~~L~~---------~~~~v~~~a~~~L~~  142 (488)
                      .....+++.+.+.. ...  ..+..|..-.. ........+++.|++..|+.+|..         .+......++.++..
T Consensus        66 ~~p~~~i~~L~~~~-~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clka  142 (187)
T PF06371_consen   66 SSPEWYIKKLKSRP-STS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKA  142 (187)
T ss_dssp             HHHHHHHHHHTTT---HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHccC-ccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHH
Confidence            34556677776655 221  22333333222 234667778888999999998853         345788899999999


Q ss_pred             hhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhh
Q 011328          143 VAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFC  187 (488)
Q Consensus       143 l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~  187 (488)
                      +.....+....+...+.+..++..+ .+.+..++..++..|..+|
T Consensus       143 l~n~~~G~~~v~~~~~~v~~i~~~L-~s~~~~~r~~~leiL~~lc  186 (187)
T PF06371_consen  143 LMNTKYGLEAVLSHPDSVNLIALSL-DSPNIKTRKLALEILAALC  186 (187)
T ss_dssp             HTSSHHHHHHHHCSSSHHHHHHHT---TTSHHHHHHHHHHHHHHH
T ss_pred             HHccHHHHHHHHcCcHHHHHHHHHH-CCCCHHHHHHHHHHHHHHH
Confidence            9877766555666677888888888 7788999999999998876

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=93.77  E-value=5  Score=40.80  Aligned_cols=175  Identities=13%  Similarity=0.105  Sum_probs=106.4

Q ss_pred             hhhchHHHHHHhhccC-ChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCch
Q 011328          197 QTRPALPALERLIHSN-DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDM  275 (488)
Q Consensus       197 ~~~~~~~~l~~ll~~~-~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~  275 (488)
                      .....+|.|...++.. ...+..-.+.-+.-|.+.-+   ..-+...+++.|...+++.+..++..++..+..++..-+ 
T Consensus       346 ~~~~~~p~l~pi~~~~~~~~~~l~i~e~mdlL~~Kt~---~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD-  421 (700)
T KOG2137|consen  346 FGPKMLPALKPIYSASDPKQALLFILENMDLLKEKTP---PEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESID-  421 (700)
T ss_pred             hhhhhhHHHHHHhccCCcccchhhHHhhHHHHHhhCC---hHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc-
Confidence            3455667777777642 22222222222222222111   113334788889999999999999999999999887544 


Q ss_pred             hhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhc
Q 011328          276 QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNAT  355 (488)
Q Consensus       276 ~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~  355 (488)
                        -..++..+++.+..+.....+..++..++.++..++..    .+...-...+..+.+..+..++.+......+..++.
T Consensus       422 --~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~----lD~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~  495 (700)
T KOG2137|consen  422 --VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQR----LDKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALA  495 (700)
T ss_pred             --HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHH----HHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence              23445567888877654444888999999999988732    111111124556666777778888887777777776


Q ss_pred             cCCCHHHHHHHHHCCChHHHHhhcCCCC
Q 011328          356 SGGSNEQIKFLVSQGCIKPLCDLLNCPD  383 (488)
Q Consensus       356 ~~~~~~~~~~l~~~~~i~~L~~ll~~~~  383 (488)
                      ..... . ..+....+++.++-+...+.
T Consensus       496 ~~~~~-g-~ev~~~~VlPlli~ls~~~~  521 (700)
T KOG2137|consen  496 LIIYS-G-VEVMAENVLPLLIPLSVAPS  521 (700)
T ss_pred             hhccc-c-eeeehhhhhhhhhhhhhccc
Confidence            53321 1 22333466777777666544

>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []

Probab=93.75  E-value=4.1  Score=39.87  Aligned_cols=276  Identities=10%  Similarity=0.086  Sum_probs=127.9

Q ss_pred             CHHHHHHhhcC---CCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCC-CCHHHHHHHHHHHhhhhCCCch
Q 011328           74 VVPRFIEFLSR---DDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPK  149 (488)
Q Consensus        74 ~i~~L~~lL~~---~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~-~~~~v~~~a~~~L~~l~~~~~~  149 (488)
                      ++..|+.++..   ..++.+-....+++..+-..-......+++. .+..+....++ .+|..-.....+++.+.+....
T Consensus        27 ll~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p~~~~il~~-L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~  105 (435)
T PF03378_consen   27 LLQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDILPIAVEILQH-LTAILKEVSKNPSNPRFNHYLFESIGALIRFVCE  105 (435)
T ss_dssp             HHHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTGGGHHHHHHH-HHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-G
T ss_pred             HHHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccC
Confidence            44555555544   2335555555666655555434444444332 34444445555 5677777777777777543221


Q ss_pred             hHH---HHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCC-CCChhhhhchHHHHHHhhccCChhHHHHHHHHHH
Q 011328          150 CRD---LVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP-QPLFEQTRPALPALERLIHSNDDEVLTDACWALS  225 (488)
Q Consensus       150 ~~~---~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~  225 (488)
                      ...   .-.+...++.+...| +.+-.+..-++...++.+.+..+ ..........++.++.-.--....-.-...+.|.
T Consensus       106 ~~~~~v~~~E~~L~P~f~~IL-q~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~~gniPalvrLL~  184 (435)
T PF03378_consen  106 ADPEAVSQFEEALFPPFQEIL-QQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWERRGNIPALVRLLQ  184 (435)
T ss_dssp             GGHH---HHHHHHHHHHHHHH-HTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGSTTTHHHHHHHHH
T ss_pred             CChhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhccCCCcCcHHHHHH
Confidence            111   123444566677777 44444566677777777766543 1111222333443332211111111223333444


Q ss_pred             HhccCCchhHHHHHHh----CCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchh-hHHHhhCCChHHHHHHhcccchhh
Q 011328          226 YLSDGTNDKIQAVIEA----GVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQ-TQCIINHQALPCLLDLLTQNYKKS  300 (488)
Q Consensus       226 ~l~~~~~~~~~~~~~~----~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~-~~~~~~~~~~~~L~~lL~~~~~~~  300 (488)
                      ......+...   ...    +++..+-+++.+...  -..+...|..+...-+.. ....+. .++..++.-|++....+
T Consensus       185 a~i~k~~~~i---~~~~~l~~iLgvFQkLi~sk~~--D~~gF~LL~~iv~~~p~~~l~~yl~-~I~~lll~RLq~skT~k  258 (435)
T PF03378_consen  185 AYIKKDPSFI---VANNQLEPILGVFQKLIASKAN--DHYGFDLLESIVENLPPEALEPYLK-QIFTLLLTRLQSSKTEK  258 (435)
T ss_dssp             HHHHHHGGG-------S-CHHHHHHHHHHHT-TTC--HHHHHHHHHHHHHHS-HHHHGGGHH-HHHHHHHHHHHHC--HH
T ss_pred             HHHHhCchhh---cchhhHHHHHHHHHHHHCCCCc--chHHHHHHHHHHHHCCHHHHHHHHH-HHHHHHHHHHhhCCcHH
Confidence            3333322221   111    233444455555432  245677777777655532 222222 45666666666554666


Q ss_pred             HHHHHHHHHHHHhc-CCHHHHHHHHH---cCChHHHHHHH--h---c-CChhHHHHHHHHHHHhccC
Q 011328          301 IKKEACWTISNITA-GNVNQIQAIIE---AGIIGPLVNLL--L---N-AEFEIKKEAAWAISNATSG  357 (488)
Q Consensus       301 v~~~a~~~L~nl~~-~~~~~~~~l~~---~~~l~~L~~ll--~---~-~~~~v~~~a~~aL~~l~~~  357 (488)
                      .++..+..++.++. .+++..-..++   .|++..++.-+  .   . ....-|+.++-++.++...
T Consensus       259 f~~~fv~F~~~~~~~~g~~~li~~id~IQ~glF~~il~~v~lp~~~k~~~~~erKi~~vGltkLL~e  325 (435)
T PF03378_consen  259 FVKRFVVFLSLFAIKYGPDFLIQTIDSIQPGLFGMILEKVWLPDLQKVSGPIERKICAVGLTKLLCE  325 (435)
T ss_dssp             HHHHHHHHHHHHHHHH-HHHHHHHHHTTSTTHHHHHHHHTHHHHGGG--SHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHcCHHHHHHHHHHhcCCcHHHHHHHHhcCchhhcCCcchhhHHHHHHHHHHhc
Confidence            66666666666654 34554444443   44444444421  1   1 1233466677777776643

CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.

>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=93.73  E-value=9.8  Score=39.43  Aligned_cols=306  Identities=13%  Similarity=0.078  Sum_probs=140.0

Q ss_pred             HHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHH-hhCC--CCHHHHHHHHHHHhhhhCC
Q 011328           70 IQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVR-LLSS--PTDDVREQAVWALGNVAGD  146 (488)
Q Consensus        70 ~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~-~L~~--~~~~v~~~a~~~L~~l~~~  146 (488)
                      .+.+.+..+.+-|+.+|...-|..|+..+..++...+.....++.. .+..++. +..+  .+..-++.+...+..++..
T Consensus       358 FED~pleYiRRDlEGsDvdTRRR~a~dlvrgL~~~fe~~vt~v~~~-~v~~~l~~y~~nPS~nWk~kd~aiyL~talaik  436 (960)
T KOG1992|consen  358 FEDNPLEYIRRDLEGSDVDTRRRAAIDLVRGLCKNFEGQVTGVFSS-EVQRLLDQYSKNPSGNWKKKDRAIYLVTALAIK  436 (960)
T ss_pred             hccCHHHHHHHhcccCCcchhHHHHHHHHHHHHHHhcchhHHHHHH-HHHHHHHHhccCCCccccccchhhhhhHHHHhh
Confidence            3444555555666655533345666777777877443333333322 2333333 3333  4555666666666666643


Q ss_pred             CchhHHHHHhcC----ChH----HHHHHhcc---cccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChh
Q 011328          147 SPKCRDLVLSNG----ALM----PLLAQFNE---HAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDE  215 (488)
Q Consensus       147 ~~~~~~~~~~~~----~l~----~L~~ll~~---~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~  215 (488)
                      ....+.-+...+    .+.    .++..|..   ...+-++..++   ..+...............+|.++..+..+..-
T Consensus       437 ~~t~~~Gvtstn~lvdv~~Ff~~~ilp~L~s~~vn~~pilka~aI---Ky~~~FR~ql~~~~lm~~~p~li~~L~a~s~v  513 (960)
T KOG1992|consen  437 GQTAKHGVTSTNELVDVVDFFANQILPDLLSPNVNEFPILKADAI---KYIYTFRNQLGKEHLMALLPRLIRFLEAESRV  513 (960)
T ss_pred             cchhhcceeeccccccHHHHHHHHhhHHhccCccccccchhhccc---ceeeeecccCChHHHHHHHHHHHHhccCcchH
Confidence            221111111111    111    11111211   11222222222   22222222334455577899999999999999


Q ss_pred             HHHHHHHHHHHhccCCchhHHHHHHh-CC-------HHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhh---CC
Q 011328          216 VLTDACWALSYLSDGTNDKIQAVIEA-GV-------CPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIIN---HQ  284 (488)
Q Consensus       216 v~~~al~~L~~l~~~~~~~~~~~~~~-~~-------l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~---~~  284 (488)
                      +-.+|+.++-.+....++.-..+... .+       +..|++.++.+...--+...+++..+..-.+........   .+
T Consensus       514 vhsYAA~aiEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p~~~EneylmKaImRii~i~~~~i~p~~~~~l~~  593 (960)
T KOG1992|consen  514 VHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALSLPGKAENEYLMKAIMRIISILQSAIIPHAPELLRQ  593 (960)
T ss_pred             HHHHHHHHHHhccccccCccccccchhhcchHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHhCHHhhhhhhhHHHHH
Confidence            99999999987764333211112211 22       222333333332222233344444433323322211111   12


Q ss_pred             ChHHHHHHhcccchhhHHHH---HHHHHHHHhc-CCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCC-
Q 011328          285 ALPCLLDLLTQNYKKSIKKE---ACWTISNITA-GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGS-  359 (488)
Q Consensus       285 ~~~~L~~lL~~~~~~~v~~~---a~~~L~nl~~-~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~-  359 (488)
                      ..+.+...-+++.++..-..   +..++-+... .++.....+ +...+|.+...+..+-.+.--.+...++.+..... 
T Consensus       594 Lteiv~~v~KNPs~P~fnHYLFEsi~~li~~t~~~~~~~vs~~-e~aL~p~fq~Il~eDI~EfiPYvfQlla~lve~~~~  672 (960)
T KOG1992|consen  594 LTEIVEEVSKNPSNPQFNHYLFESIGLLIRKTCKANPSAVSSL-EEALFPVFQTILSEDIQEFIPYVFQLLAVLVEHSSG  672 (960)
T ss_pred             HHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHhccCchHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            22333333345544443333   3333333333 334433333 34577777777777655555566666666554321 


Q ss_pred             --HHHHHHHH----------HCCChHHHHhhcC
Q 011328          360 --NEQIKFLV----------SQGCIKPLCDLLN  380 (488)
Q Consensus       360 --~~~~~~l~----------~~~~i~~L~~ll~  380 (488)
                        ++....+.          ..|-++.+++++.
T Consensus       673 ~ip~~~~~l~~~lLsp~lW~r~gNipalvrLl~  705 (960)
T KOG1992|consen  673 TIPDSYSPLFPPLLSPNLWKRSGNIPALVRLLQ  705 (960)
T ss_pred             CCchhHHHHHHHhcCHHHHhhcCCcHHHHHHHH
Confidence              22222221          3577777777765

>PF10363 DUF2435: Protein of unknown function (DUF2435)

Probab=93.59  E-value=0.31  Score=35.90  Aligned_cols=85  Identities=15%  Similarity=0.234  Sum_probs=64.6

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh
Q 011328           30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT  109 (488)
Q Consensus        30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~  109 (488)
                      ..+...+..|.++.+.+|-.++..|++++...+   ....-...++..+...|++++ +-+-..|+.++..++...++  
T Consensus         3 ~~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~---~~~~~~~~il~l~l~~L~d~D-syVYL~aI~~L~~La~~~p~--   76 (92)
T PF10363_consen    3 ETLQEALSDLNDPLPPVRAHGLVLLRKLIESKS---EPVIDIPKILDLFLSQLKDED-SYVYLNAIKGLAALADRHPD--   76 (92)
T ss_pred             HHHHHHHHHccCCCcchHHHHHHHHHHHHHcCC---cchhhHHHHHHHHHHHcCCCC-chHHHHHHHHHHHHHHHChH--
Confidence            345678889999999999999999999998753   122223567888899999999 89999999999999984443  


Q ss_pred             HHHHhCCCHHHHHHhhC
Q 011328          110 RVVIDHGAVPIFVRLLS  126 (488)
Q Consensus       110 ~~~~~~g~i~~L~~~L~  126 (488)
                            .+++.|++...
T Consensus        77 ------~vl~~L~~~y~   87 (92)
T PF10363_consen   77 ------EVLPILLDEYA   87 (92)
T ss_pred             ------HHHHHHHHHHh
Confidence                  23555555443

>PF13251 DUF4042: Domain of unknown function (DUF4042)

Probab=93.51  E-value=1.3  Score=37.26  Aligned_cols=141  Identities=15%  Similarity=0.154  Sum_probs=89.3

Q ss_pred             HHHHHHHHHHHhccCCchh-HH----HHH------Hh-CCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhC
Q 011328          216 VLTDACWALSYLSDGTNDK-IQ----AVI------EA-GVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINH  283 (488)
Q Consensus       216 v~~~al~~L~~l~~~~~~~-~~----~~~------~~-~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~  283 (488)
                      +|..|+.+|..++...+.+ .-    .++      .. .-...+.-++.++++.+|..|+.++..+..+........-+.
T Consensus         2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~   81 (182)
T PF13251_consen    2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES   81 (182)
T ss_pred             hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence            5677777777777652211 11    011      01 122334445677899999999999999988654332222211


Q ss_pred             -------------------CChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHH--HHHHcCChHHHHHHHhcCChh
Q 011328          284 -------------------QALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQ--AIIEAGIIGPLVNLLLNAEFE  342 (488)
Q Consensus       284 -------------------~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~--~l~~~~~l~~L~~ll~~~~~~  342 (488)
                                         .+...|+..|+.+.+..+....+.++..+....|-.+-  .++ ..++..+..++.+.|.+
T Consensus        82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll-~~~v~~v~~~l~~~d~~  160 (182)
T PF13251_consen   82 KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLL-TEVVTQVRPLLRHRDPN  160 (182)
T ss_pred             CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHH-HHHHHHHHHHHhcCCCc
Confidence                               13455666667666778888999999999885443321  121 12556666677788999


Q ss_pred             HHHHHHHHHHHhccC
Q 011328          343 IKKEAAWAISNATSG  357 (488)
Q Consensus       343 v~~~a~~aL~~l~~~  357 (488)
                      ++..++.+++.+...
T Consensus       161 v~v~~l~~~~~l~s~  175 (182)
T PF13251_consen  161 VRVAALSCLGALLSV  175 (182)
T ss_pred             HHHHHHHHHHHHHcC
Confidence            999999999988764

>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function

Probab=93.48  E-value=0.75  Score=39.19  Aligned_cols=125  Identities=14%  Similarity=0.106  Sum_probs=78.8

Q ss_pred             cCChhHHHHHHHHHHHhccCCchhHHHHHH----------------hCCHHHHHHhcCC------CCcchHhHHHHHHhH
Q 011328          211 SNDDEVLTDACWALSYLSDGTNDKIQAVIE----------------AGVCPRLVELLRH------PSPSVLIPALRTVGN  268 (488)
Q Consensus       211 ~~~~~v~~~al~~L~~l~~~~~~~~~~~~~----------------~~~l~~L~~lL~~------~~~~v~~~a~~~L~~  268 (488)
                      +++......++..|+|++....... .+++                ...+..|+..+..      +...-......++.|
T Consensus         6 ~~~~~~adl~~MLLsNlT~~~~~~~-~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~N   84 (192)
T PF04063_consen    6 DPKSPLADLACMLLSNLTRSDSGCE-KLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLAN   84 (192)
T ss_pred             CCCcchHHHHHHHHHHhccchHHHH-HHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHH
Confidence            3445556667777777776544332 1221                1345666666544      234455677889999


Q ss_pred             hhcCCchhhHHHhhC--CC--hHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHH---cCChHHHHHHHhcC
Q 011328          269 IVTGDDMQTQCIINH--QA--LPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIE---AGIIGPLVNLLLNA  339 (488)
Q Consensus       269 l~~~~~~~~~~~~~~--~~--~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~---~~~l~~L~~ll~~~  339 (488)
                      ++. .+..++.+++.  +.  +..|+....+. +..-|..++.+|.|++.....+ ..++.   .+++|.|+--+..+
T Consensus        85 lS~-~~~gR~~~l~~~~~~~~l~kLl~ft~~~-s~iRR~Gva~~IrNccFd~~~H-~~LL~~~~~~iLp~LLlPLaGp  159 (192)
T PF04063_consen   85 LSQ-LPEGRQFFLDPQRYDGPLQKLLPFTEHK-SVIRRGGVAGTIRNCCFDTDSH-EWLLSDDEVDILPYLLLPLAGP  159 (192)
T ss_pred             hcC-CHHHHHHHhCchhhhhHHHHHHHHhccC-cHHHHHHHHHHHHHhhccHhHH-HHhcCchhhhhHHHHHhhccCC
Confidence            988 45566666643  33  77888888888 7777888999999999864443 33332   35666666655543

It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).

>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length

Probab=93.37  E-value=0.82  Score=37.84  Aligned_cols=35  Identities=26%  Similarity=0.327  Sum_probs=28.5

Q ss_pred             CChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHH
Q 011328          284 QALPCLLDLLTQNYKKSIKKEACWTISNITAGNVN  318 (488)
Q Consensus       284 ~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~  318 (488)
                      ..++.|+.+|+++.+..+|.+++++++.+..-+|.
T Consensus        10 ~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~   44 (160)
T PF11865_consen   10 ELLDILLNILKTEQSQSIRREALRVLGILGALDPY   44 (160)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcH
Confidence            46778888998887899999999999999874343

It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].

>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]

Probab=93.27  E-value=0.55  Score=40.11  Aligned_cols=147  Identities=10%  Similarity=0.185  Sum_probs=91.0

Q ss_pred             CCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCC----CChhHHHHHHHHHHHhcC-CCchhhHHHHhCC
Q 011328           42 DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRD----DFPQLQFEAAWALTNIAS-GTSENTRVVIDHG  116 (488)
Q Consensus        42 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~----~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~g  116 (488)
                      +...-|...+-.+.+++.++ ++....+++..+--.+...|...    ..+.+|..++.+++.+.. ++++....+....
T Consensus       111 ~~~snRvcnaL~lLQclaSh-Petk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTe  189 (315)
T COG5209         111 ERESNRVCNALNLLQCLASH-PETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTE  189 (315)
T ss_pred             chhhhHHHHHHHHHHHHhcC-cchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhh
Confidence            33444554444444444444 56555566655443444444322    225689999999999998 4456677788889


Q ss_pred             CHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhc-------CChHHHHHHhcccccHhHHHHHHHHHHHhhcC
Q 011328          117 AVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSN-------GALMPLLAQFNEHAKLSMLRNATWTLSNFCRG  189 (488)
Q Consensus       117 ~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-------~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~  189 (488)
                      ++|.+++.++.+++--+..|+.++..+..++...+......       ..+..++..+-......+...++.+-..++..
T Consensus       190 ivPLcLrIme~gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~  269 (315)
T COG5209         190 IVPLCLRIMELGSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDK  269 (315)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCC
Confidence            99999999999999999999999999887776543332211       12222333332334445556666666555554

>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length

Probab=92.79  E-value=6.7  Score=34.86  Aligned_cols=138  Identities=16%  Similarity=0.090  Sum_probs=89.7

Q ss_pred             HHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHH
Q 011328          161 MPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIE  240 (488)
Q Consensus       161 ~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~  240 (488)
                      +.++..+.+..++..+...+.+|..++..+   . .....++..+..+...++.....-+.+.+..+...++...     
T Consensus         3 ~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~---~-~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f-----   73 (234)
T PF12530_consen    3 PLLLYKLGKISDPELQLPLLEALPSLACHK---N-VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF-----   73 (234)
T ss_pred             HHHHHHhcCCCChHHHHHHHHHHHHHhccC---c-cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH-----
Confidence            445554667788999999999999999875   1 3345566777777777777766667777777776554222     


Q ss_pred             hCCHHHHHHh-----c---CC--CCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHh-cccchhhHHHHHHHHH
Q 011328          241 AGVCPRLVEL-----L---RH--PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLL-TQNYKKSIKKEACWTI  309 (488)
Q Consensus       241 ~~~l~~L~~l-----L---~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL-~~~~~~~v~~~a~~~L  309 (488)
                       +.+..++..     .   .+  ...+.......++..++...+....     .+++.+..++ ++. ++.++..++.++
T Consensus        74 -~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~g~-----~ll~~ls~~L~~~~-~~~~~alale~l  146 (234)
T PF12530_consen   74 -PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDHGV-----DLLPLLSGCLNQSC-DEVAQALALEAL  146 (234)
T ss_pred             -HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhhHH-----HHHHHHHHHHhccc-cHHHHHHHHHHH
Confidence             223322222     1   11  1233444445677777776665222     4677788888 666 788888899899


Q ss_pred             HHHhc
Q 011328          310 SNITA  314 (488)
Q Consensus       310 ~nl~~  314 (488)
                      ..++.
T Consensus       147 ~~Lc~  151 (234)
T PF12530_consen  147 APLCE  151 (234)
T ss_pred             HHHHH
Confidence            98884

>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []

Probab=92.72  E-value=8.4  Score=37.78  Aligned_cols=263  Identities=11%  Similarity=0.079  Sum_probs=122.9

Q ss_pred             CCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCC----CCCChhhhhchHH
Q 011328          128 PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK----PQPLFEQTRPALP  203 (488)
Q Consensus       128 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~----~~~~~~~~~~~~~  203 (488)
                      +++.+-...++++..+-..-......+.. ..+..+....++.+++..-.....+++.+.+..    +.........++|
T Consensus        42 ENeylMk~iMRvl~~~~e~~~p~~~~il~-~L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~~~~~v~~~E~~L~P  120 (435)
T PF03378_consen   42 ENEYLMKCIMRVLSVLQEDILPIAVEILQ-HLTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEADPEAVSQFEEALFP  120 (435)
T ss_dssp             C-HHHHHHHHHHHHHSTTTTGGGHHHHHH-HHHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GGGHH---HHHHHHHH
T ss_pred             cchHHHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCCChhHHHHHHHHHHH
Confidence            56667777777776665544333333332 122223233333446665556556666554432    3333356678889


Q ss_pred             HHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcc---hHhHHHHHHhHhhcCCchhhHHH
Q 011328          204 ALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPS---VLIPALRTVGNIVTGDDMQTQCI  280 (488)
Q Consensus       204 ~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~---v~~~a~~~L~~l~~~~~~~~~~~  280 (488)
                      .+...|+.+-.+..-++...++.+.+..+.  ..+- ......+-.++...-++   -.-...+.|..+....+...   
T Consensus       121 ~f~~ILq~dV~EF~PYvfQIla~Lle~~~~--~~~p-~~y~~L~~~Ll~p~lWe~~gniPalvrLL~a~i~k~~~~i---  194 (435)
T PF03378_consen  121 PFQEILQQDVQEFIPYVFQILAQLLELRPS--SPLP-DAYKQLFPPLLSPALWERRGNIPALVRLLQAYIKKDPSFI---  194 (435)
T ss_dssp             HHHHHHHTT-TTTHHHHHHHHHHHHHHSS----S---TTTGGGHHHHTSGGGGGSTTTHHHHHHHHHHHHHHHGGG----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--CCCc-HHHHHHHHHHcCcchhccCCCcCcHHHHHHHHHHhCchhh---
Confidence            999999988778888888888888755430  1011 11122222222221111   12233445555444333222   


Q ss_pred             hhC----CChHHHHHHhcccchhhHHHHHHHHHHHHhcCC-HHHHHHHHHcCChHHHHHHHhcC-ChhHHHHHHHHHHHh
Q 011328          281 INH----QALPCLLDLLTQNYKKSIKKEACWTISNITAGN-VNQIQAIIEAGIIGPLVNLLLNA-EFEIKKEAAWAISNA  354 (488)
Q Consensus       281 ~~~----~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~-~~~~~~l~~~~~l~~L~~ll~~~-~~~v~~~a~~aL~~l  354 (488)
                      ...    +++..+-+++.++.++   ..+...|..+...- .+..+..+. .++..++.-|++. .++.++.-+..++.+
T Consensus       195 ~~~~~l~~iLgvFQkLi~sk~~D---~~gF~LL~~iv~~~p~~~l~~yl~-~I~~lll~RLq~skT~kf~~~fv~F~~~~  270 (435)
T PF03378_consen  195 VANNQLEPILGVFQKLIASKAND---HYGFDLLESIVENLPPEALEPYLK-QIFTLLLTRLQSSKTEKFVKRFVVFLSLF  270 (435)
T ss_dssp             ---S-CHHHHHHHHHHHT-TTCH---HHHHHHHHHHHHHS-HHHHGGGHH-HHHHHHHHHHHHC--HHHHHHHHHHHHHH
T ss_pred             cchhhHHHHHHHHHHHHCCCCcc---hHHHHHHHHHHHHCCHHHHHHHHH-HHHHHHHHHHhhCCcHHHHHHHHHHHHHH
Confidence            222    3444455566665222   45667777776632 333333333 3566666666644 555555666666655


Q ss_pred             ccCCCHHHHHHHHH---CCChHHHHhhc------CCCCHHHHHHHHHHHHHHHHhh
Q 011328          355 TSGGSNEQIKFLVS---QGCIKPLCDLL------NCPDPRIVTVCLEGLENILKAG  401 (488)
Q Consensus       355 ~~~~~~~~~~~l~~---~~~i~~L~~ll------~~~~~~v~~~al~~L~~l~~~~  401 (488)
                      +...+++..-..++   .|....+..-+      +-..+.-++.+.-++.+++...
T Consensus       271 ~~~~g~~~li~~id~IQ~glF~~il~~v~lp~~~k~~~~~erKi~~vGltkLL~es  326 (435)
T PF03378_consen  271 AIKYGPDFLIQTIDSIQPGLFGMILEKVWLPDLQKVSGPIERKICAVGLTKLLCES  326 (435)
T ss_dssp             HHHH-HHHHHHHHHTTSTTHHHHHHHHTHHHHGGG--SHHHHHHHHHHHHHHHHSS
T ss_pred             HHHcCHHHHHHHHHHhcCCcHHHHHHHHhcCchhhcCCcchhhHHHHHHHHHHhcc
Confidence            54434444433333   23333333311      1122333555555666665443

CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.

>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus

Probab=92.66  E-value=4.9  Score=34.28  Aligned_cols=147  Identities=18%  Similarity=0.170  Sum_probs=92.8

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh
Q 011328           30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT  109 (488)
Q Consensus        30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~  109 (488)
                      .-++.+++...+++..++..|+..+..++...=-.+      ...+|.++.+..+++ +.++..|...+..+....+...
T Consensus         8 ryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP------~~cvp~lIAL~ts~~-~~ir~~A~~~l~~l~eK~~s~v   80 (187)
T PF12830_consen    8 RYLKNILELCLSSDDSVRLAALQVLELILRQGLVNP------KQCVPTLIALETSPN-PSIRSRAYQLLKELHEKHESLV   80 (187)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCCh------HHHHhHhhhhhCCCC-hHHHHHHHHHHHHHHHHhHHHH
Confidence            346788998899999999999999999887541111      137899999999988 9999999999999988555544


Q ss_pred             HHHHhCCCHHHHHHhhC---CCCH-HH---HHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccc-------cHhH
Q 011328          110 RVVIDHGAVPIFVRLLS---SPTD-DV---REQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHA-------KLSM  175 (488)
Q Consensus       110 ~~~~~~g~i~~L~~~L~---~~~~-~v---~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~-------~~~v  175 (488)
                      ..-...| +..-..+-.   .+.. ..   ....+..+..+...+...|..+     +..+++.+..+.       ...-
T Consensus        81 ~~~~~~g-i~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~F-----l~~l~k~f~~~~~~~~~~~~~~~  154 (187)
T PF12830_consen   81 ESRYSEG-IRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRKF-----LKSLLKQFDFDLTKLSSESSPSD  154 (187)
T ss_pred             HHHHHHH-HHHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHHHH-----HHHHHHHHHhhccccccccchhH
Confidence            4333333 333333222   1111 11   4555666677776555555554     456666663221       2333


Q ss_pred             HHHHHHHHHHhhcC
Q 011328          176 LRNATWTLSNFCRG  189 (488)
Q Consensus       176 ~~~a~~~L~~l~~~  189 (488)
                      .....++..||+.-
T Consensus       155 l~~~~Fla~nLA~l  168 (187)
T PF12830_consen  155 LDFLLFLAENLATL  168 (187)
T ss_pred             HHHHHHHHHHHhcC
Confidence            44555555565544

>PF08167 RIX1: rRNA processing/ribosome biogenesis

Probab=92.62  E-value=0.79  Score=38.20  Aligned_cols=115  Identities=19%  Similarity=0.148  Sum_probs=79.3

Q ss_pred             CCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhc---CCHH
Q 011328          242 GVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA---GNVN  318 (488)
Q Consensus       242 ~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~---~~~~  318 (488)
                      .....+..+|+++++.-|..++..+...+..++...-.---...+..++.+|+.++...+++.++.++..+..   +.++
T Consensus        25 ~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~  104 (165)
T PF08167_consen   25 KLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPT  104 (165)
T ss_pred             HHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCc
Confidence            4567788899998899999999999888876532111111235788899999888678889999999988875   4455


Q ss_pred             HHHHHHHc---CChHHHHHHHhcCChhHHHHHHHHHHHhccCC
Q 011328          319 QIQAIIEA---GIIGPLVNLLLNAEFEIKKEAAWAISNATSGG  358 (488)
Q Consensus       319 ~~~~l~~~---~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~  358 (488)
                      ..+.+...   ++++.++.+++.  ......++.+|..+....
T Consensus       105 l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~  145 (165)
T PF08167_consen  105 LTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHH  145 (165)
T ss_pred             hHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHC
Confidence            55555432   345555555554  466677888888877543

>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]

Probab=92.54  E-value=1.2  Score=38.06  Aligned_cols=98  Identities=15%  Similarity=0.078  Sum_probs=73.2

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC-----ChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhh
Q 011328          304 EACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA-----EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDL  378 (488)
Q Consensus       304 ~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~-----~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~l  378 (488)
                      .|+..+..++++ ++....+++..+--.+...+...     ...+|..++.+++.+..++++....++....+++.+.++
T Consensus       119 naL~lLQclaSh-Petk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLrI  197 (315)
T COG5209         119 NALNLLQCLASH-PETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLRI  197 (315)
T ss_pred             HHHHHHHHHhcC-cchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHHH
Confidence            444444455544 77777777766544455555432     456889999999999999999999999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHHHHHhhh
Q 011328          379 LNCPDPRIVTVCLEGLENILKAGE  402 (488)
Q Consensus       379 l~~~~~~v~~~al~~L~~l~~~~~  402 (488)
                      ++.+.+--+..++.++..++..+.
T Consensus       198 me~gSElSktvaifI~qkil~dDv  221 (315)
T COG5209         198 MELGSELSKTVAIFIFQKILGDDV  221 (315)
T ss_pred             HHhhhHHHHHHHHHHHHHHhccch
Confidence            998887777777777777765443

>smart00638 LPD_N Lipoprotein N-terminal Domain

Probab=92.54  E-value=4.1  Score=41.91  Aligned_cols=160  Identities=18%  Similarity=0.218  Sum_probs=95.9

Q ss_pred             CHHHHHHhhCC----CCHHHHHHHHHHHhhhhC----CCchhHHHHHhcCChHHHHHHhcc---cccHhHHHHHHHHHHH
Q 011328          117 AVPIFVRLLSS----PTDDVREQAVWALGNVAG----DSPKCRDLVLSNGALMPLLAQFNE---HAKLSMLRNATWTLSN  185 (488)
Q Consensus       117 ~i~~L~~~L~~----~~~~v~~~a~~~L~~l~~----~~~~~~~~~~~~~~l~~L~~ll~~---~~~~~v~~~a~~~L~~  185 (488)
                      .+..+..++++    ..+.++..|+.+++.+..    +.+.+... .....++.+...+..   ..+...+..++.+|+|
T Consensus       394 ~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~-~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN  472 (574)
T smart00638      394 ILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDF-VLEELLKYLHELLQQAVSKGDEEEIQLYLKALGN  472 (574)
T ss_pred             HHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChh-hHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhc
Confidence            35666677765    467788888888887752    22221111 112345566665532   2345556677888888


Q ss_pred             hhcCCCCCChhhhhchHHHHHHhhc-c--CChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCC--CCcchHh
Q 011328          186 FCRGKPQPLFEQTRPALPALERLIH-S--NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH--PSPSVLI  260 (488)
Q Consensus       186 l~~~~~~~~~~~~~~~~~~l~~ll~-~--~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~--~~~~v~~  260 (488)
                      +...          ..++.+..++. +  ....+|..|+++|..++...+...+        +.+++++.+  .++++|.
T Consensus       473 ~g~~----------~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v~--------~~l~~i~~n~~e~~EvRi  534 (574)
T smart00638      473 AGHP----------SSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKVQ--------EVLLPIYLNRAEPPEVRM  534 (574)
T ss_pred             cCCh----------hHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHHH--------HHHHHHHcCCCCChHHHH
Confidence            7654          35555666665 2  2568999999999988765543322        556666654  4678888


Q ss_pred             HHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHH
Q 011328          261 PALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEA  305 (488)
Q Consensus       261 ~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a  305 (488)
                      .|+..|...   +|..       ..+..+...+..+.+..|+...
T Consensus       535 aA~~~lm~t---~P~~-------~~l~~ia~~l~~E~~~QV~sfv  569 (574)
T smart00638      535 AAVLVLMET---KPSV-------ALLQRIAELLNKEPNLQVASFV  569 (574)
T ss_pred             HHHHHHHhc---CCCH-------HHHHHHHHHHhhcCcHHHHHHh
Confidence            887766442   2322       2355667777666456665543

>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function

Probab=92.51  E-value=1.7  Score=37.12  Aligned_cols=105  Identities=16%  Similarity=0.104  Sum_probs=71.8

Q ss_pred             CCCCcchHhHHHHHHhHhhcCCchhhHHHh----------------hCCChHHHHHHhccc-----chhhHHHHHHHHHH
Q 011328          252 RHPSPSVLIPALRTVGNIVTGDDMQTQCII----------------NHQALPCLLDLLTQN-----YKKSIKKEACWTIS  310 (488)
Q Consensus       252 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~----------------~~~~~~~L~~lL~~~-----~~~~v~~~a~~~L~  310 (488)
                      .+++......++..|+|++..... ...++                +...+..|++.+..+     ....--...+.++.
T Consensus         5 ~~~~~~~adl~~MLLsNlT~~~~~-~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~   83 (192)
T PF04063_consen    5 TDPKSPLADLACMLLSNLTRSDSG-CEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLA   83 (192)
T ss_pred             cCCCcchHHHHHHHHHHhccchHH-HHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHH
Confidence            345556777888888888874432 22222                123566677766541     12334567888999


Q ss_pred             HHhcCCHHHHHHHHHc--CC--hHHHHHHHhcCChhHHHHHHHHHHHhccCC
Q 011328          311 NITAGNVNQIQAIIEA--GI--IGPLVNLLLNAEFEIKKEAAWAISNATSGG  358 (488)
Q Consensus       311 nl~~~~~~~~~~l~~~--~~--l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~  358 (488)
                      |++.. ++.++.+++.  +.  +..|+..+.+.+..-|.-++.+|.|++...
T Consensus        84 NlS~~-~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~  134 (192)
T PF04063_consen   84 NLSQL-PEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDT  134 (192)
T ss_pred             HhcCC-HHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccH
Confidence            99886 7778888753  34  778888888887777788999999999754

It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).

>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length

Probab=92.51  E-value=10  Score=36.40  Aligned_cols=267  Identities=11%  Similarity=0.027  Sum_probs=131.9

Q ss_pred             CHHHHHHHHHHHhhhhCCCchhHHHHHhcC---ChHHHHHHhc-ccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHH
Q 011328          129 TDDVREQAVWALGNVAGDSPKCRDLVLSNG---ALMPLLAQFN-EHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPA  204 (488)
Q Consensus       129 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~---~l~~L~~ll~-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~  204 (488)
                      +.++..+|+++++.+..+.. ....+.+..   .+...+..+. .+.+..+...++|+|..=--............++..
T Consensus        59 ~~~L~~qALkll~~~l~~~~-i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~~~~~~~~~~~~l~~~  137 (372)
T PF12231_consen   59 DSRLVIQALKLLGFFLYHPE-IVSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFSPKIMTSDRVERLLAA  137 (372)
T ss_pred             chHHHHHHHHHHHHHHccHH-HHhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCcccchhhHHHHHHH
Confidence            67888999999999875532 222211111   2334444442 233445566666666532111111111111222222


Q ss_pred             HHHhhc-cCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCch---hh---
Q 011328          205 LERLIH-SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDM---QT---  277 (488)
Q Consensus       205 l~~ll~-~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~---~~---  277 (488)
                      +..+-+ -+...+....+.++.++....+..+..-.. ..++.++..+-+....++..|..++..+...-+.   ..   
T Consensus       138 l~~i~~~~~s~si~~erL~i~~~ll~q~p~~M~~~~~-~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~  216 (372)
T PF12231_consen  138 LHNIKNRFPSKSIISERLNIYKRLLSQFPQQMIKHAD-IWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSV  216 (372)
T ss_pred             HHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHH
Confidence            222222 346788899999999999877655332222 3567777777776777777766655554422111   11   


Q ss_pred             HHHhhC----C-----ChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHH-HHHHHHHcCChHHHHHHHhcCChhHHHHH
Q 011328          278 QCIINH----Q-----ALPCLLDLLTQNYKKSIKKEACWTISNITAGNVN-QIQAIIEAGIIGPLVNLLLNAEFEIKKEA  347 (488)
Q Consensus       278 ~~~~~~----~-----~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~-~~~~l~~~~~l~~L~~ll~~~~~~v~~~a  347 (488)
                      ....+.    +     +.+.+..++.++ +...-..-+|...-+..+++. .....+ +..+...-.+.+++++.+|..|
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~L~~mi~~~-~~~~~a~~iW~~~i~LL~~~~~~~w~~~-n~wL~v~e~cFn~~d~~~k~~A  294 (372)
T PF12231_consen  217 LEDLQRSLENGKLIQLYCERLKEMIKSK-DEYKLAMQIWSVVILLLGSSRLDSWEHL-NEWLKVPEKCFNSSDPQVKIQA  294 (372)
T ss_pred             HHHhccccccccHHHHHHHHHHHHHhCc-CCcchHHHHHHHHHHHhCCchhhccHhH-hHHHHHHHHHhcCCCHHHHHHH
Confidence            111111    2     233355666663 222222233333322222221 111111 2245555556778899999999


Q ss_pred             HHHHHHhccCC--CHHHHHHHHHCCChHHHHhhcCCC-CH----HHHHHHHHHHHHHHHh
Q 011328          348 AWAISNATSGG--SNEQIKFLVSQGCIKPLCDLLNCP-DP----RIVTVCLEGLENILKA  400 (488)
Q Consensus       348 ~~aL~~l~~~~--~~~~~~~l~~~~~i~~L~~ll~~~-~~----~v~~~al~~L~~l~~~  400 (488)
                      ..+-..+....  +.........- +..++...++.. ..    +++..++..+.+++-+
T Consensus       295 ~~aW~~liy~~~~~~~~~~k~l~l-L~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~~lly~  353 (372)
T PF12231_consen  295 FKAWRRLIYASNPNELTSPKRLKL-LCQPLSSQLRREKSSKTKEEVWWYLLYSLCNLLYY  353 (372)
T ss_pred             HHHHHHHHHHhcCCccccHHHHHH-HHHHHHHHhCccccccccHHHHHHHHHHHhchHHH
Confidence            98888876522  11111111110 233333334422 22    6777888888877744

Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.

>KOG2933 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.45  E-value=0.55  Score=42.32  Aligned_cols=144  Identities=13%  Similarity=0.189  Sum_probs=98.7

Q ss_pred             HHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHH
Q 011328          244 CPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAI  323 (488)
Q Consensus       244 l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l  323 (488)
                      +...+..|.+.++.....++..+..++...++.....+. .++-.+++-+++. ...|-+.|+.+++.+...-...+...
T Consensus        90 l~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~-~vii~vvkslKNl-RS~VsraA~~t~~difs~ln~~i~~~  167 (334)
T KOG2933|consen   90 LKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLH-EVIIAVVKSLKNL-RSAVSRAACMTLADIFSSLNNSIDQE  167 (334)
T ss_pred             HHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445667778888888889999999888866544443333 4566677777888 88899999999999987433333332


Q ss_pred             HHcCChHHHHHHHhcC---ChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHh
Q 011328          324 IEAGIIGPLVNLLLNA---EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKA  400 (488)
Q Consensus       324 ~~~~~l~~L~~ll~~~---~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~  400 (488)
                      .+    ..+..++...   +.-++..|-.+|..+..+..+..        ++..|...+.+.++.++..+..++.+....
T Consensus       168 ld----~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~~--------~L~~L~~~~~~~n~r~r~~a~~~~~~~v~r  235 (334)
T KOG2933|consen  168 LD----DLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQK--------LLRKLIPILQHSNPRVRAKAALCFSRCVIR  235 (334)
T ss_pred             HH----HHHHHHHhhhcccchHHHHHHHHHHHHHHhccChHH--------HHHHHHHHHhhhchhhhhhhhcccccccee
Confidence            22    1222333332   45689999999999988765532        466777778888888887777666666544


Q ss_pred             h
Q 011328          401 G  401 (488)
Q Consensus       401 ~  401 (488)
                      .
T Consensus       236 l  236 (334)
T KOG2933|consen  236 L  236 (334)
T ss_pred             c
Confidence            3

>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]

Probab=92.39  E-value=16  Score=38.69  Aligned_cols=127  Identities=13%  Similarity=0.135  Sum_probs=89.7

Q ss_pred             HHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhh
Q 011328          130 DDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLI  209 (488)
Q Consensus       130 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll  209 (488)
                      +.++..+.-+|+++|-.+....+     ..++.+++-|..++...++.+.+-+++-+|...    .......+|.+...|
T Consensus       945 ~~vra~~vvTlakmcLah~~LaK-----r~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~Y----Tam~d~YiP~I~~~L 1015 (1529)
T KOG0413|consen  945 DKVRAVGVVTLAKMCLAHDRLAK-----RLMPMLVKELEYNTAHAIRNNIVLAMGDICSSY----TAMTDRYIPMIAASL 1015 (1529)
T ss_pred             hHHHHHHHHHHHHHHhhhhHHHH-----HHHHHHHHHHHhhhHHHHhcceeeeehhhHHHH----HHHHHHhhHHHHHHh
Confidence            46788888999999865443322     357889999977888888888888887777543    223457889999999


Q ss_pred             ccCChhHHHHHHHHHHHhccCCchhHHHHHHh--CCHHHHHHhcCCCCcchHhHHHHHHhHhhc
Q 011328          210 HSNDDEVLTDACWALSYLSDGTNDKIQAVIEA--GVCPRLVELLRHPSPSVLIPALRTVGNIVT  271 (488)
Q Consensus       210 ~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~--~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~  271 (488)
                      .++++-|+..++..|.++....      +++-  .++-.++..+-+.+++++..|=.+++.+..
T Consensus      1016 ~Dp~~iVRrqt~ilL~rLLq~~------~vKw~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~ 1073 (1529)
T KOG0413|consen 1016 CDPSVIVRRQTIILLARLLQFG------IVKWNGELFIRFMLALLDANEDIRNDAKFYISEVLQ 1073 (1529)
T ss_pred             cCchHHHHHHHHHHHHHHHhhh------hhhcchhhHHHHHHHHcccCHHHHHHHHHHHHHHHh
Confidence            9999999999999999987543      2222  222333333445567788877777777654

>KOG2933 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.39  E-value=1.2  Score=40.19  Aligned_cols=145  Identities=17%  Similarity=0.183  Sum_probs=101.5

Q ss_pred             hchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhH
Q 011328          199 RPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQ  278 (488)
Q Consensus       199 ~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~  278 (488)
                      ...+...+..|.+.++......+..+..++...++.....+. .++-.+++-+++....|...|+.+++.+.........
T Consensus        87 ~~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~-~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~  165 (334)
T KOG2933|consen   87 EAALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLH-EVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSID  165 (334)
T ss_pred             HHHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345556677788889999999999999998766544444443 5667777888888889999999999999875544443


Q ss_pred             HHhhCCChHHHHHHh-ccc--chhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhc
Q 011328          279 CIINHQALPCLLDLL-TQN--YKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNAT  355 (488)
Q Consensus       279 ~~~~~~~~~~L~~lL-~~~--~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~  355 (488)
                      ..     ++.++..| ...  .+.-++..|-.+|..+..+-...       .+++.|+..+.+.++.++..++.+..+..
T Consensus       166 ~~-----ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~-------~~L~~L~~~~~~~n~r~r~~a~~~~~~~v  233 (334)
T KOG2933|consen  166 QE-----LDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQ-------KLLRKLIPILQHSNPRVRAKAALCFSRCV  233 (334)
T ss_pred             HH-----HHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChH-------HHHHHHHHHHhhhchhhhhhhhccccccc
Confidence            32     23333333 221  14568888999998887742221       25777888888888888888887777665


Q ss_pred             c
Q 011328          356 S  356 (488)
Q Consensus       356 ~  356 (488)
                      .
T Consensus       234 ~  234 (334)
T KOG2933|consen  234 I  234 (334)
T ss_pred             e
Confidence            4

>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional

Probab=92.37  E-value=15  Score=42.73  Aligned_cols=266  Identities=9%  Similarity=0.091  Sum_probs=146.2

Q ss_pred             CCCHHHHHHHHHHHhhhhCCCc---hhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHH
Q 011328          127 SPTDDVREQAVWALGNVAGDSP---KCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALP  203 (488)
Q Consensus       127 ~~~~~v~~~a~~~L~~l~~~~~---~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~  203 (488)
                      +.+..++..|+..|..++..--   +....-.....+.++...+.+..+.++++.++.++.++......    ....+.+
T Consensus      1148 ~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~----nIkSGWk 1223 (1780)
T PLN03076       1148 SENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVN----NVKSGWK 1223 (1780)
T ss_pred             CcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHh----hhhcCcH
Confidence            3467788888888877763211   11111112345678888776777889999999999988765421    1222444


Q ss_pred             HHHHhh----ccCChhHHHHHHHHHHHhccCCchhH-----HHHHHhCCHHHHHHhcCCC-CcchHhHHHHHHhHhhcCC
Q 011328          204 ALERLI----HSNDDEVLTDACWALSYLSDGTNDKI-----QAVIEAGVCPRLVELLRHP-SPSVLIPALRTVGNIVTGD  273 (488)
Q Consensus       204 ~l~~ll----~~~~~~v~~~al~~L~~l~~~~~~~~-----~~~~~~~~l~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~  273 (488)
                      .+..++    ...++.+...+..++..+....-...     ..+  ..++..+....... +.++-..|+..|+.++..-
T Consensus      1224 tIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F--~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~L 1301 (1780)
T PLN03076       1224 SMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTF--TDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKL 1301 (1780)
T ss_pred             HHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHH--HHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHH
Confidence            444444    35578888888888877664311100     011  13445555554433 3566677777777552210


Q ss_pred             c---------------------------hhhH-----HHhhCCChHHHHH---HhcccchhhHHHHHHHHHHHHhcC---
Q 011328          274 D---------------------------MQTQ-----CIINHQALPCLLD---LLTQNYKKSIKKEACWTISNITAG---  315 (488)
Q Consensus       274 ~---------------------------~~~~-----~~~~~~~~~~L~~---lL~~~~~~~v~~~a~~~L~nl~~~---  315 (488)
                      .                           ....     ......+++.|..   +..++ +.+||..|+.+|-.+...   
T Consensus      1302 a~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~-RlEVR~~ALqtLF~iL~~yG~ 1380 (1780)
T PLN03076       1302 AEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDP-RPEIRKSALQVLFDTLRNHGH 1380 (1780)
T ss_pred             HhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHHhhc
Confidence            0                           0000     0001123344333   34555 899999999998877651   


Q ss_pred             --CHHHHHHHHHcCChHHHHHHHhcC------------------C-hh----HHHHHHHHHHHhccCCC--HHHHHHHHH
Q 011328          316 --NVNQIQAIIEAGIIGPLVNLLLNA------------------E-FE----IKKEAAWAISNATSGGS--NEQIKFLVS  368 (488)
Q Consensus       316 --~~~~~~~l~~~~~l~~L~~ll~~~------------------~-~~----v~~~a~~aL~~l~~~~~--~~~~~~l~~  368 (488)
                        +++....++. +++-+++..++..                  + .+    +...+..+|..++.--.  -+....+..
T Consensus      1381 ~Fs~~~W~~if~-~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L~ 1459 (1780)
T PLN03076       1381 LFSLPLWERVFE-SVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKFYPTVNPLLK 1459 (1780)
T ss_pred             cCCHHHHHHHHH-HHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              3445555555 4555666555421                  0 00    23334444444432110  011222222


Q ss_pred             CCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhh
Q 011328          369 QGCIKPLCDLLNCPDPRIVTVCLEGLENILKAG  401 (488)
Q Consensus       369 ~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~  401 (488)
                       +++..|..++..++..+......+|.+++...
T Consensus      1460 -~~l~ll~~ci~q~n~~la~ig~~~l~~li~~n 1491 (1780)
T PLN03076       1460 -KVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNA 1491 (1780)
T ss_pred             -HHHHHHHHHHcCchHHHHHHHHHHHHHHHHHh
Confidence             56777777778888888888888888887543

>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]

Probab=92.35  E-value=2.3  Score=49.89  Aligned_cols=265  Identities=14%  Similarity=0.178  Sum_probs=149.7

Q ss_pred             hcCCCHHHHHHHHHHHHHHhccCCC--ccHHHHH--HcCCHHHHHHhh-cCCCChhHHHHHHHHHHHhcCCCchhhHHHH
Q 011328           39 VWSDDRNIQLDATTQFRKLLSIERS--PPINEVI--QSGVVPRFIEFL-SRDDFPQLQFEAAWALTNIASGTSENTRVVI  113 (488)
Q Consensus        39 L~s~~~~~~~~a~~~L~~l~~~~~~--~~~~~~~--~~~~i~~L~~lL-~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~  113 (488)
                      +..++++++..+...+..++.....  +......  ...++..+..+- .+++ +.++......+.      ...-....
T Consensus       490 ~~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~vl~~ll~~aia~~~-~~i~~~v~~~l~------~~~~~~la  562 (2341)
T KOG0891|consen  490 LEADDSEIRKNAALTCCELLKYDIICSQTSPHALQVVKEVLSALLTVAIADTD-PDIRIRVLSSLN------ERFDAQLA  562 (2341)
T ss_pred             HhcccHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHHHhccCCC-cchhhhHHhhhc------cchhhhhc
Confidence            3457888888887777776654311  0000001  112233333332 2344 666655444433      22223344


Q ss_pred             hCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhc---ccccHhHHHHHHHHHHHhhcCC
Q 011328          114 DHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN---EHAKLSMLRNATWTLSNFCRGK  190 (488)
Q Consensus       114 ~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~---~~~~~~v~~~a~~~L~~l~~~~  190 (488)
                      +.+.+..+...++.+.-.++..+...+++++..+|...-..+.    ...+..+.   .+.-..+......-+..+....
T Consensus       563 Q~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr----~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~~~  638 (2341)
T KOG0891|consen  563 QPDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLR----KTLLELLTELEFSGMARTKEESAKLLCELIISS  638 (2341)
T ss_pred             CchhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHH----HHHHHHhchhhhcchHHhHHHHHHHhhHHHHHH
Confidence            5566666777778888899999999999998866632111111    11111111   1111111111111111111111


Q ss_pred             CCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCC-CCcchHhHHHHHHhHh
Q 011328          191 PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH-PSPSVLIPALRTVGNI  269 (488)
Q Consensus       191 ~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-~~~~v~~~a~~~L~~l  269 (488)
                      +.-........+..++..+.+.+..+...++.+++.++...........+ ..++.+.+.+.. .+..-+..++++++++
T Consensus       639 ~~~i~~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~-~~~~~~~~~l~~~s~~~rr~aslk~l~~l  717 (2341)
T KOG0891|consen  639 PVLISPYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVD-ELFSLIIKMLQDQSSLGKRLAALKALGQL  717 (2341)
T ss_pred             HHHHHhhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccc-hHHHHHHHHHHHhhhhhchhHHHHHhhhh
Confidence            12222333455667777788888899999999999999776655554555 566666666644 4566778899999999


Q ss_pred             hcCCchhhHHHh-hCCChHHHHHHhcccchhhHHHHHHHHHHHHhcC
Q 011328          270 VTGDDMQTQCII-NHQALPCLLDLLTQNYKKSIKKEACWTISNITAG  315 (488)
Q Consensus       270 ~~~~~~~~~~~~-~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~  315 (488)
                      ............ ...++..+...+.......+|.++...++++...
T Consensus       718 ~s~~~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~g~~  764 (2341)
T KOG0891|consen  718 ESSTGYVVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGLLGAL  764 (2341)
T ss_pred             hcccceEecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhhccc
Confidence            875543322222 2245666777777776778888999888877653

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=92.28  E-value=3.9  Score=41.53  Aligned_cols=171  Identities=16%  Similarity=0.125  Sum_probs=106.4

Q ss_pred             ccHHHHHHHhc-CCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchh
Q 011328           30 ESLPAMVAGVW-SDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN  108 (488)
Q Consensus        30 ~~i~~l~~~L~-s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~  108 (488)
                      ..+|.|...++ +...++.+.-+..+--+..+.    -..-+.+.++|.|..-+++.+ ..+|..++..+..++..-+  
T Consensus       349 ~~~p~l~pi~~~~~~~~~~l~i~e~mdlL~~Kt----~~e~~~~~IlplL~~S~~~~~-~~iQ~~~L~~lptv~e~iD--  421 (700)
T KOG2137|consen  349 KMLPALKPIYSASDPKQALLFILENMDLLKEKT----PPEEVKEKILPLLYRSLEDSD-VQIQELALQILPTVAESID--  421 (700)
T ss_pred             hhhHHHHHHhccCCcccchhhHHhhHHHHHhhC----ChHHHHHHHHHHHHHHhcCcc-hhhHHHHHHhhhHHHHhcc--
Confidence            44556666665 333333333333332333222    233345678899999999999 8999999999999987222  


Q ss_pred             hHHHHhCCCHHHHHHh-hCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhh
Q 011328          109 TRVVIDHGAVPIFVRL-LSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFC  187 (488)
Q Consensus       109 ~~~~~~~g~i~~L~~~-L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~  187 (488)
                       ...++..++|.+-.+ +.+.+..++.+++.+++.+...-    +...-...+.++.+.. +..++.+....+.+..++.
T Consensus       422 -~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~l----D~~~v~d~~lpi~~~~-~~~dp~iv~~~~~i~~~l~  495 (700)
T KOG2137|consen  422 -VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRL----DKAAVLDELLPILKCI-KTRDPAIVMGFLRIYEALA  495 (700)
T ss_pred             -HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHH----HHHHhHHHHHHHHHHh-cCCCcHHHHHHHHHHHHHH
Confidence             344555667887775 34578999999999999997221    1111112344444444 5567777777777777766


Q ss_pred             cCCCCCChhhhhchHHHHHHhhccCC
Q 011328          188 RGKPQPLFEQTRPALPALERLIHSND  213 (488)
Q Consensus       188 ~~~~~~~~~~~~~~~~~l~~ll~~~~  213 (488)
                      ...+.........++|.++.+...+.
T Consensus       496 ~~~~~g~ev~~~~VlPlli~ls~~~~  521 (700)
T KOG2137|consen  496 LIIYSGVEVMAENVLPLLIPLSVAPS  521 (700)
T ss_pred             hhcccceeeehhhhhhhhhhhhhccc
Confidence            65533344555778888887766554

>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins

Probab=92.24  E-value=0.7  Score=37.04  Aligned_cols=73  Identities=10%  Similarity=-0.001  Sum_probs=61.4

Q ss_pred             ChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCC------CCHHHHHHHHHHHHHHHHh
Q 011328          328 IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNC------PDPRIVTVCLEGLENILKA  400 (488)
Q Consensus       328 ~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~------~~~~v~~~al~~L~~l~~~  400 (488)
                      ++..+.+-+.++++.++..|+..|-.++.++.......+...+++..|++++..      .++.|+..++..+..-...
T Consensus        39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~  117 (139)
T cd03567          39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLE  117 (139)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence            566677788899999999999999999999988888888888999999999963      5678999988887765443

The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.

>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes

Probab=92.08  E-value=2.3  Score=38.76  Aligned_cols=157  Identities=18%  Similarity=0.182  Sum_probs=97.2

Q ss_pred             HHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCC--CHHHHHHhhCC----CCHHHHHHHHHHHhhhhCCCc
Q 011328           75 VPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHG--AVPIFVRLLSS----PTDDVREQAVWALGNVAGDSP  148 (488)
Q Consensus        75 i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g--~i~~L~~~L~~----~~~~v~~~a~~~L~~l~~~~~  148 (488)
                      ...+.+.+.+-. ++-+.-++..+.-++. .+.....+...+  +...+..++..    ..+..+..++++++|+..+..
T Consensus        65 ~~~~~~~~~~Wp-~~~~fP~lDLlRl~~l-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~  142 (268)
T PF08324_consen   65 LILLLKILLSWP-PESRFPALDLLRLAAL-HPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPP  142 (268)
T ss_dssp             HHHHHHHHCCS--CCC-HHHHHHHHHHCC-CHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCC
T ss_pred             HHHHHHHHHhCC-CccchhHHhHHHHHHh-CccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCc
Confidence            455556665554 4567778888877777 666655554443  24445544433    578889999999999987766


Q ss_pred             hhHHHHHhc-C-ChHHHHHHhcccc---cHhHHHHHHHHHHHhhcCC--CCCChhhhhchHHHHHHhhc-c-CChhHHHH
Q 011328          149 KCRDLVLSN-G-ALMPLLAQFNEHA---KLSMLRNATWTLSNFCRGK--PQPLFEQTRPALPALERLIH-S-NDDEVLTD  219 (488)
Q Consensus       149 ~~~~~~~~~-~-~l~~L~~ll~~~~---~~~v~~~a~~~L~~l~~~~--~~~~~~~~~~~~~~l~~ll~-~-~~~~v~~~  219 (488)
                      . +..+... + .+...+..+..+.   +..++..++..+.|++-..  ...........+..+.+.+. . .+++....
T Consensus       143 ~-~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R  221 (268)
T PF08324_consen  143 G-RQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYR  221 (268)
T ss_dssp             C-HHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHH
T ss_pred             c-HHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHH
Confidence            4 4544442 2 2333333332222   6778888888888887543  11122233446666777443 2 58999999


Q ss_pred             HHHHHHHhccCCchh
Q 011328          220 ACWALSYLSDGTNDK  234 (488)
Q Consensus       220 al~~L~~l~~~~~~~  234 (488)
                      ++-+++++...++..
T Consensus       222 ~LvAlGtL~~~~~~~  236 (268)
T PF08324_consen  222 LLVALGTLLSSSDSA  236 (268)
T ss_dssp             HHHHHHHHHCCSHHH
T ss_pred             HHHHHHHHhccChhH
Confidence            999999999666443

It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.

>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain

Probab=92.04  E-value=2.7  Score=32.71  Aligned_cols=95  Identities=14%  Similarity=0.203  Sum_probs=66.1

Q ss_pred             HHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHH-h
Q 011328          344 KKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAID-D  422 (488)
Q Consensus       344 ~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~-~  422 (488)
                      -.....=|.+++.. ++.....     +++.|.+-|++.++.|+..+|.+|..++..+...           |...++ .
T Consensus        18 pgy~~~Eia~~t~~-s~~~~~e-----i~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~-----------f~~~~~~~   80 (122)
T cd03572          18 PGYLYEEIAKLTRK-SVGSCQE-----LLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSD-----------FKRELQRN   80 (122)
T ss_pred             chHHHHHHHHHHHc-CHHHHHH-----HHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHH-----------HHHHHHHh
Confidence            34444555566554 2233332     5788889899889999999999999999887643           444443 4


Q ss_pred             hccHHHHHHhhcC--------CCHHHHHHHHHHHHHhcCCC
Q 011328          423 AEGLEKIENLQSH--------DNTEIYEKAVKILETYWVEE  455 (488)
Q Consensus       423 ~g~~~~L~~l~~~--------~~~~v~~~a~~~l~~~~~~~  455 (488)
                      ...++.+.++...        .+..|+..|..+++-+|+.+
T Consensus        81 ~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~if~~~  121 (122)
T cd03572          81 SAQIRECANYKGPPDPLKGDSLNEKVREEAQELIKAIFSYS  121 (122)
T ss_pred             HHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHHHhccC
Confidence            4456667776552        35679999999999999875

The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t

>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional

Probab=92.04  E-value=4.7  Score=46.49  Aligned_cols=267  Identities=12%  Similarity=0.109  Sum_probs=141.4

Q ss_pred             CCCChhHHHHHHHHHHHhcCCC---chhhHHHHhCCCHHHHHHhhCC-CCHHHHHHHHHHHhhhhCCCchhHHHHHhcCC
Q 011328           84 RDDFPQLQFEAAWALTNIASGT---SENTRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSNGA  159 (488)
Q Consensus        84 ~~~~~~v~~~a~~~L~~l~~~~---~~~~~~~~~~g~i~~L~~~L~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~  159 (488)
                      +.+ ..++..|+..|..++..-   ++....-.+..++.++..++.+ .+.++++..+.++.++.....   ..+ .. +
T Consensus      1148 ~~n-~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~---~nI-kS-G 1221 (1780)
T PLN03076       1148 SEN-LSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRV---NNV-KS-G 1221 (1780)
T ss_pred             Ccc-hhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHH---hhh-hc-C
Confidence            334 678888888887877522   2211122234566777776654 778999999999998864321   122 21 4


Q ss_pred             hHHHHHHhc---ccccHhHHHHHHHHHHHhhcCC-CCCC---hhhhhchHHHHHHhhccC-ChhHHHHHHHHHHHhcc--
Q 011328          160 LMPLLAQFN---EHAKLSMLRNATWTLSNFCRGK-PQPL---FEQTRPALPALERLIHSN-DDEVLTDACWALSYLSD--  229 (488)
Q Consensus       160 l~~L~~ll~---~~~~~~v~~~a~~~L~~l~~~~-~~~~---~~~~~~~~~~l~~ll~~~-~~~v~~~al~~L~~l~~--  229 (488)
                      ...++..+.   .+.++.+...|..++..+..+. +...   ......++..+.++.... +.++-..|+..|++++.  
T Consensus      1222 WktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~L 1301 (1780)
T PLN03076       1222 WKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKL 1301 (1780)
T ss_pred             cHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHH
Confidence            444554442   3456677777777777766543 1111   223345555555555433 35555555555554311  


Q ss_pred             --CCc-----------------------hh------HHH--HHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchh
Q 011328          230 --GTN-----------------------DK------IQA--VIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQ  276 (488)
Q Consensus       230 --~~~-----------------------~~------~~~--~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~  276 (488)
                        ..-                       ..      ...  -.-..++..|..+..++.++||..|+.+|-.+.......
T Consensus      1302 a~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~ 1381 (1780)
T PLN03076       1302 AEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHL 1381 (1780)
T ss_pred             HhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhcc
Confidence              000                       00      000  001123333444456788899999999887766432211


Q ss_pred             h-----HHHhhCCChHHHHHHhccc------------------c----hhhHHH---HHHHHHHHHhcCCHHHHHHHHHc
Q 011328          277 T-----QCIINHQALPCLLDLLTQN------------------Y----KKSIKK---EACWTISNITAGNVNQIQAIIEA  326 (488)
Q Consensus       277 ~-----~~~~~~~~~~~L~~lL~~~------------------~----~~~v~~---~a~~~L~nl~~~~~~~~~~l~~~  326 (488)
                      .     ..++. +++-.++..+++.                  .    +..+..   .|+..+.++....-+....++. 
T Consensus      1382 Fs~~~W~~if~-~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L~- 1459 (1780)
T PLN03076       1382 FSLPLWERVFE-SVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKFYPTVNPLLK- 1459 (1780)
T ss_pred             CCHHHHHHHHH-HHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence            1     11222 3344444444211                  0    001222   3333333333332333333333 


Q ss_pred             CChHHHHHHHhcCChhHHHHHHHHHHHhccCC
Q 011328          327 GIIGPLVNLLLNAEFEIKKEAAWAISNATSGG  358 (488)
Q Consensus       327 ~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~  358 (488)
                      +++..|..++..++..+...+..+|.++....
T Consensus      1460 ~~l~ll~~ci~q~n~~la~ig~~~l~~li~~n 1491 (1780)
T PLN03076       1460 KVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNA 1491 (1780)
T ss_pred             HHHHHHHHHHcCchHHHHHHHHHHHHHHHHHh
Confidence            46777777777788889999999999988644

>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=91.87  E-value=12  Score=35.77  Aligned_cols=132  Identities=14%  Similarity=0.122  Sum_probs=75.0

Q ss_pred             hhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh---cCChhHHHHHHHHHHHhccCCCH------H-----HHH
Q 011328          299 KSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLL---NAEFEIKKEAAWAISNATSGGSN------E-----QIK  364 (488)
Q Consensus       299 ~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~---~~~~~v~~~a~~aL~~l~~~~~~------~-----~~~  364 (488)
                      ..-|..|+..+..++....+....++. +.+..++.-..   +.++.-+..|+..++.++..+..      +     ...
T Consensus       225 ~TrR~AA~dfl~~L~~~~~~~v~~i~~-~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~  303 (370)
T PF08506_consen  225 DTRRRAACDFLRSLCKKFEKQVTSILM-QYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVV  303 (370)
T ss_dssp             -SHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HH
T ss_pred             CCcHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHH
Confidence            445678888888888653333333322 12222222111   23678888999999999876621      0     234


Q ss_pred             HHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHH
Q 011328          365 FLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKA  444 (488)
Q Consensus       365 ~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~~~~~v~~~a  444 (488)
                      .+....+++.|. --.+..+-++..|++.+..+-..-+              .+.+.  +.++.+...+.+++.-|+..|
T Consensus       304 ~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~--------------~~~l~--~~~~~l~~~L~~~~~vv~tyA  366 (370)
T PF08506_consen  304 DFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLP--------------KEQLL--QIFPLLVNHLQSSSYVVHTYA  366 (370)
T ss_dssp             HHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS---------------HHHHH--HHHHHHHHHTTSS-HHHHHHH
T ss_pred             HHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCC--------------HHHHH--HHHHHHHHHhCCCCcchhhhh
Confidence            445556666666 2123456677777777765543322              23332  357889999999999898887


Q ss_pred             HHHH
Q 011328          445 VKIL  448 (488)
Q Consensus       445 ~~~l  448 (488)
                      +..+
T Consensus       367 A~~i  370 (370)
T PF08506_consen  367 AIAI  370 (370)
T ss_dssp             HHHH
T ss_pred             hhhC
Confidence            7653

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.

>PF10363 DUF2435: Protein of unknown function (DUF2435)

Probab=91.74  E-value=0.72  Score=33.95  Aligned_cols=77  Identities=10%  Similarity=0.086  Sum_probs=57.8

Q ss_pred             hHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHH
Q 011328          286 LPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKF  365 (488)
Q Consensus       286 ~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~  365 (488)
                      +...+.-+.++ ...+|..++..|..+.....  ....-..+++..+...++++|+-|-.+|..+|..++..........
T Consensus         5 ~~~al~~L~dp-~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~vl~~   81 (92)
T PF10363_consen    5 LQEALSDLNDP-LPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDEVLPI   81 (92)
T ss_pred             HHHHHHHccCC-CcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHHHHHH
Confidence            45567777888 78899999999999998544  1111224578888889999999999999999999997654333333

>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning

Probab=91.74  E-value=1.5  Score=32.56  Aligned_cols=70  Identities=20%  Similarity=0.237  Sum_probs=57.9

Q ss_pred             HCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHH
Q 011328          368 SQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKI  447 (488)
Q Consensus       368 ~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~~~~~v~~~a~~~  447 (488)
                      +...+..|++.+..++......++..+..+++...             ....+.+.|+.+.|.++....+++.+.....+
T Consensus        28 ~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~-------------a~~~l~~iG~~~fL~klr~~~~~~~~~~id~i   94 (98)
T PF14726_consen   28 ERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPY-------------AAQILRDIGAVRFLSKLRPNVEPNLQAEIDEI   94 (98)
T ss_pred             HHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcH-------------HHHHHHHccHHHHHHHHHhcCCHHHHHHHHHH
Confidence            34568888888888888888999999999887765             36778899999999999988889988888877


Q ss_pred             HHH
Q 011328          448 LET  450 (488)
Q Consensus       448 l~~  450 (488)
                      ++.
T Consensus        95 l~~   97 (98)
T PF14726_consen   95 LDQ   97 (98)
T ss_pred             Hhc
Confidence            765

>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting)

Probab=91.66  E-value=0.7  Score=37.29  Aligned_cols=74  Identities=12%  Similarity=0.080  Sum_probs=61.9

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcC
Q 011328           30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIAS  103 (488)
Q Consensus        30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~  103 (488)
                      +.+..|.+.|++.++.+++.|+..|-.++.+-.......+...+++..|++++.....+.|+..++..+...+.
T Consensus        41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~  114 (142)
T cd03569          41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL  114 (142)
T ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence            66778899999999999999999999988765455667777889999999999865448999999998887765

The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.

>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal

Probab=91.59  E-value=10  Score=34.27  Aligned_cols=175  Identities=17%  Similarity=0.156  Sum_probs=99.0

Q ss_pred             CHHHHHHhhcCCCChhHHHHHHHHHHHhcCC-------CchhhHHHHhCCCHHHHHHhhCCCC----HHHHHHHHHHHhh
Q 011328           74 VVPRFIEFLSRDDFPQLQFEAAWALTNIASG-------TSENTRVVIDHGAVPIFVRLLSSPT----DDVREQAVWALGN  142 (488)
Q Consensus        74 ~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~-------~~~~~~~~~~~g~i~~L~~~L~~~~----~~v~~~a~~~L~~  142 (488)
                      +-+.+.+-+.++.   ....++..+..++..       ..+.|-.+.-.+.+|.++.-+++++    ......++..|+.
T Consensus        65 lq~Ll~KGL~Ss~---t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~  141 (262)
T PF14225_consen   65 LQPLLLKGLRSSS---TYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQ  141 (262)
T ss_pred             HHHHHhCccCCCC---cHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHH
Confidence            3334444455544   345566666666541       1223333333345677777777655    2344556678888


Q ss_pred             hhCCCchhHHHHHhcCChHHHHHHhcccc---cHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHH
Q 011328          143 VAGDSPKCRDLVLSNGALMPLLAQFNEHA---KLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTD  219 (488)
Q Consensus       143 l~~~~~~~~~~~~~~~~l~~L~~ll~~~~---~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~  219 (488)
                      +|....        ...+..++....+..   ..+....++..|..-..  |    ......+-.++.++.++-+.++..
T Consensus       142 ~a~~~~--------~~~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~--P----~~~~~~l~~Ll~lL~n~~~w~~~~  207 (262)
T PF14225_consen  142 VAEAQG--------LPNLARILSSYAKGRFRDKDDFLSQVVSYLREAFF--P----DHEFQILTFLLGLLENGPPWLRRK  207 (262)
T ss_pred             HHHhCC--------CccHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhC--c----hhHHHHHHHHHHHHhCCcHHHHHH
Confidence            874322        123444444443322   23334444444443211  1    123456777889999998999999


Q ss_pred             HHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhh
Q 011328          220 ACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIV  270 (488)
Q Consensus       220 al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~  270 (488)
                      ++.+|..+....+-...  ...+++..+.++++.+.   -..|+.+|-...
T Consensus       208 ~L~iL~~ll~~~d~~~~--~~~dlispllrlL~t~~---~~eAL~VLd~~v  253 (262)
T PF14225_consen  208 TLQILKVLLPHVDMRSP--HGADLISPLLRLLQTDL---WMEALEVLDEIV  253 (262)
T ss_pred             HHHHHHHHhccccCCCC--cchHHHHHHHHHhCCcc---HHHHHHHHHHHH
Confidence            99999998876543322  44468888888887754   444555554443

>KOG1822 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.30  E-value=32  Score=39.50  Aligned_cols=236  Identities=16%  Similarity=0.083  Sum_probs=123.8

Q ss_pred             HHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCC-CCHHHHHHHHHHHhhhhCCCc
Q 011328           70 IQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSP  148 (488)
Q Consensus        70 ~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~-~~~~v~~~a~~~L~~l~~~~~  148 (488)
                      +..-.+..++..|..++ +..+-.+..+++.++...++. ..+  .+..+.+++-+.+ .++..|..-..+++.+-.+..
T Consensus       873 v~~~~~~l~~~sl~~~~-p~~rc~~~ea~arLaq~v~~~-~f~--a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvg  948 (2067)
T KOG1822|consen  873 VRSSALTLIVNSLINPN-PKLRCAAAEALARLAQVVGSA-PFV--ASLAQNSFDKLASARDPITRTGHSLALGCLHKYVG  948 (2067)
T ss_pred             HHHHHHHHHhhhhccCC-hHHHHHHHHHHHHHHHhcccc-chH--HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhcc
Confidence            33344556666777777 888888888888888722211 111  1234455555544 666677666667776654332


Q ss_pred             hhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCC---hhHHHHH-----
Q 011328          149 KCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSND---DEVLTDA-----  220 (488)
Q Consensus       149 ~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~---~~v~~~a-----  220 (488)
                      .....-.....+..+..+..++.++.|+..++.++..+...............+..+..++.+..   .++...-     
T Consensus       949 s~~s~qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls~p~~~~ev~q~~~R~~~ 1028 (2067)
T KOG1822|consen  949 SIGSGQHLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLSVPTSHVEVHQCYNRCFN 1028 (2067)
T ss_pred             CCCCchhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCCCCcchhhhhhhhccccc
Confidence            22111112234666777775666779999999999988877644445555556666666665322   1222111     


Q ss_pred             --------HHHHHHhccCCch--hHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHH
Q 011328          221 --------CWALSYLSDGTND--KIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLL  290 (488)
Q Consensus       221 --------l~~L~~l~~~~~~--~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~  290 (488)
                              ..+++.=...+..  ... ..+...+-...-++.++++-++..+..++-++-...+...   --.-++..+.
T Consensus      1029 ~~~~~~alittlgpeL~~N~~~d~t~-~~rts~la~~allls~~d~lnqa~ai~clqqlhlFapr~~---n~~~lV~~L~ 1104 (2067)
T KOG1822|consen 1029 GDDDEDALITTLGPELGPNGDKDSTS-TLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPRHV---NLDSLVLQLC 1104 (2067)
T ss_pred             cchhHHHHHHhcccccCCCCcccchh-HHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcchhc---cHHHHHHHHH
Confidence                    1111111111110  111 1111222222333455566777777777777665444211   1113455566


Q ss_pred             HHhcccchhhHHHHHHHHHHHHhc
Q 011328          291 DLLTQNYKKSIKKEACWTISNITA  314 (488)
Q Consensus       291 ~lL~~~~~~~v~~~a~~~L~nl~~  314 (488)
                      .++.+. ..-.|.....++..+..
T Consensus      1105 ~~l~s~-~~i~r~~~~~clrql~~ 1127 (2067)
T KOG1822|consen 1105 SLLSSS-YLILRRASFSCLRQLVQ 1127 (2067)
T ss_pred             HHhcch-hhhhhhhHHhhhhHHhH
Confidence            666665 44455555555555544

>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein)

Probab=91.29  E-value=1.1  Score=36.30  Aligned_cols=76  Identities=18%  Similarity=0.286  Sum_probs=62.9

Q ss_pred             ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcC-CCHHHHHHHHHHHH
Q 011328          371 CIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSH-DNTEIYEKAVKILE  449 (488)
Q Consensus       371 ~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~-~~~~v~~~a~~~l~  449 (488)
                      ++..|..-+.+.++.++..++..|..+++.+...           |...+.+.+.++.|..+... .+++|+.+...++.
T Consensus        38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~-----------fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~  106 (144)
T cd03568          38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKR-----------FHQEVASRDFTQELKKLINDRVHPTVKEKLREVVK  106 (144)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHH-----------HHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHH
Confidence            5667777788899999999999999999877643           67777778888889998777 78999999999999


Q ss_pred             HhcCCCCC
Q 011328          450 TYWVEEDE  457 (488)
Q Consensus       450 ~~~~~~~~  457 (488)
                      ........
T Consensus       107 ~W~~~f~~  114 (144)
T cd03568         107 QWADEFKN  114 (144)
T ss_pred             HHHHHhCC
Confidence            87766654

Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.

>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein)

Probab=91.01  E-value=1.5  Score=35.41  Aligned_cols=72  Identities=11%  Similarity=0.094  Sum_probs=62.2

Q ss_pred             ChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCC-CCHHHHHHHHHHHHHHHH
Q 011328          328 IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNC-PDPRIVTVCLEGLENILK  399 (488)
Q Consensus       328 ~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~-~~~~v~~~al~~L~~l~~  399 (488)
                      ++..|..-+.++++.++..|+..|-.++.+++......+....++..|..++.. .++.|+..++..+.....
T Consensus        38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~  110 (144)
T cd03568          38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWAD  110 (144)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence            566677778888999999999999999999998888888999999999999987 778888888887776543

Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.

>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []

Probab=91.00  E-value=2.8  Score=43.64  Aligned_cols=172  Identities=17%  Similarity=0.160  Sum_probs=89.7

Q ss_pred             chHHHHHHhhccCChhH--HHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCC----CCcchHhHHHHHHhHhhcCC
Q 011328          200 PALPALERLIHSNDDEV--LTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH----PSPSVLIPALRTVGNIVTGD  273 (488)
Q Consensus       200 ~~~~~l~~ll~~~~~~v--~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~----~~~~v~~~a~~~L~~l~~~~  273 (488)
                      ..+..+.+++.+.+..-  ....+..+......+.   .     ..+..+..+++.    .++.++..|+-+++.+....
T Consensus       395 ~av~~i~~~I~~~~~~~~ea~~~l~~l~~~~~~Pt---~-----e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~  466 (618)
T PF01347_consen  395 PAVKFIKDLIKSKKLTDDEAAQLLASLPFHVRRPT---E-----ELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKY  466 (618)
T ss_dssp             HHHHHHHHHHHTT-S-HHHHHHHHHHHHHT--------H-----HHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHhhcCCCC---H-----HHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCce
Confidence            45666777776643222  2222222222222221   1     334555555554    34567788888887776532


Q ss_pred             chh---------hHHHhhCCChHHHHHHhcc---cchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC--
Q 011328          274 DMQ---------TQCIINHQALPCLLDLLTQ---NYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA--  339 (488)
Q Consensus       274 ~~~---------~~~~~~~~~~~~L~~lL~~---~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~--  339 (488)
                      ...         ........+++.+...+..   ..+..-+..++.+|+|+...  .         .++.+..++...  
T Consensus       467 c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~~--~---------~i~~l~~~i~~~~~  535 (618)
T PF01347_consen  467 CVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGHP--E---------SIPVLLPYIEGKEE  535 (618)
T ss_dssp             HTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-G--G---------GHHHHHTTSTTSS-
T ss_pred             eecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCCc--h---------hhHHHHhHhhhccc
Confidence            111         0112233566677776652   22557788899999999542  2         566666666655  


Q ss_pred             -ChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCC--CCHHHHHHHHHHHHHHHHhhh
Q 011328          340 -EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNC--PDPRIVTVCLEGLENILKAGE  402 (488)
Q Consensus       340 -~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~--~~~~v~~~al~~L~~l~~~~~  402 (488)
                       ...+|..|++||..++... ++.        +.+.|..++.+  .+.++|..|...   ++...+
T Consensus       536 ~~~~~R~~Ai~Alr~~~~~~-~~~--------v~~~l~~I~~n~~e~~EvRiaA~~~---lm~~~P  589 (618)
T PF01347_consen  536 VPHFIRVAAIQALRRLAKHC-PEK--------VREILLPIFMNTTEDPEVRIAAYLI---LMRCNP  589 (618)
T ss_dssp             S-HHHHHHHHHTTTTGGGT--HHH--------HHHHHHHHHH-TTS-HHHHHHHHHH---HHHT--
T ss_pred             cchHHHHHHHHHHHHHhhcC-cHH--------HHHHHHHHhcCCCCChhHHHHHHHH---HHhcCC
Confidence             6789999999999997654 322        23444455543  457788776533   444434

Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.

>KOG1788 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.74  E-value=27  Score=37.60  Aligned_cols=65  Identities=12%  Similarity=0.107  Sum_probs=42.4

Q ss_pred             HHHHHH-hhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHH
Q 011328          118 VPIFVR-LLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTL  183 (488)
Q Consensus       118 i~~L~~-~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L  183 (488)
                      +..|-. +|+.++.+++...+..+..+...+++.-..+-+...++.++..+ ......++...+..|
T Consensus       468 vqmLqdiFLkaenkdlqaeVlnrmfkIftshpeNYricqelytvpllvlnm-egfPsslqvkiLkil  533 (2799)
T KOG1788|consen  468 VQMLQDIFLKAENKDLQAEVLNRMFKIFTSHPENYRICQELYTVPLLVLNM-EGFPSSLQVKILKIL  533 (2799)
T ss_pred             HHHHHHHHHHhcCcchhhHHHHHHHHHhccChHHhhHHhhccccchhhhhh-cCCChHHHHHHHHHH
Confidence            334443 46678888888888888888877777666666666777777777 333334444444443

>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting)

Probab=90.74  E-value=1.4  Score=35.53  Aligned_cols=77  Identities=17%  Similarity=0.302  Sum_probs=62.2

Q ss_pred             ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhc-CCCHHHHHHHHHHHH
Q 011328          371 CIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQS-HDNTEIYEKAVKILE  449 (488)
Q Consensus       371 ~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~-~~~~~v~~~a~~~l~  449 (488)
                      ++..|.+-+.++++.++..|+..|..+++.+...           |...+.+.+.++.|..+.. ..+++|++++..++.
T Consensus        42 a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~-----------fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~  110 (142)
T cd03569          42 AMRALKKRLLSKNPNVQLYALLLLESCVKNCGTH-----------FHDEVASREFMDELKDLIKTTKNEEVRQKILELIQ  110 (142)
T ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHH-----------HHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHH
Confidence            5777778888899999999999999999875432           5677777888888888865 678899999999998


Q ss_pred             HhcCCCCCC
Q 011328          450 TYWVEEDED  458 (488)
Q Consensus       450 ~~~~~~~~~  458 (488)
                      ........+
T Consensus       111 ~W~~~f~~~  119 (142)
T cd03569         111 AWALAFRNK  119 (142)
T ss_pred             HHHHHhCCC
Confidence            877666553

The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.

>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=90.65  E-value=24  Score=36.82  Aligned_cols=400  Identities=13%  Similarity=0.147  Sum_probs=199.0

Q ss_pred             HHHHHHhcCC--CHHHHHHHHHHHHHHhccC---CCccHHHHHH---cCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCC
Q 011328           33 PAMVAGVWSD--DRNIQLDATTQFRKLLSIE---RSPPINEVIQ---SGVVPRFIEFLSRDDFPQLQFEAAWALTNIASG  104 (488)
Q Consensus        33 ~~l~~~L~s~--~~~~~~~a~~~L~~l~~~~---~~~~~~~~~~---~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~  104 (488)
                      -.++.++.++  ++++|..|+..+.+.+..+   .++....+.+   .-+-..++.++-+.. ..+|.+--.++.-++..
T Consensus        40 l~lL~Lv~~~~~d~~~r~aaav~fKN~iKr~W~~~~~~~~~i~~~~~e~ikslIv~lMl~s~-~~iQ~qlseal~~Ig~~  118 (960)
T KOG1992|consen   40 LLLLNLVANGQQDPQIRVAAAVYFKNYIKRNWIPAEDSPIKIIEEDREQIKSLIVTLMLSSP-FNIQKQLSEALSLIGKR  118 (960)
T ss_pred             HHHHHHHhccCcChhHHHHHHHHHHHHHHhccCcCCCCccccchhHHHHHHHHHHHHHhcCc-HHHHHHHHHHHHHHhcc
Confidence            4566777653  6889999999999988742   1111112221   122334456666665 68999989999999873


Q ss_pred             C-chhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhC-CCchhHH--HHHh----cC-ChHHHHHHhcc------
Q 011328          105 T-SENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAG-DSPKCRD--LVLS----NG-ALMPLLAQFNE------  169 (488)
Q Consensus       105 ~-~~~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~-~~~~~~~--~~~~----~~-~l~~L~~ll~~------  169 (488)
                      + |+....+     ++.|+.-+++.+-.+-...+.+-..+.. ..+++|.  ...+    .+ .-.++..++.+      
T Consensus       119 DFP~kWptL-----l~dL~~~ls~~D~~~~~gVL~tahsiFkr~R~efrSdaL~~EIK~vLd~f~~Plt~Lf~~t~~l~~  193 (960)
T KOG1992|consen  119 DFPDKWPTL-----LPDLVARLSSGDFNVINGVLVTAHSIFKRYRPEFRSDALWLEIKLVLDRFAEPLTDLFRKTMELIQ  193 (960)
T ss_pred             ccchhhHHH-----HHHHHhhccccchHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHHHHhhHhHHHHHHHHHHHHHh
Confidence            3 5554443     5777777777666555555544443431 1111111  1111    01 11233333311      


Q ss_pred             --cccHhHH-------HHHHHHHHHhhcCC-CCCChhhhhchHHHHHHhhccCC-------------hhHHHHHHHHHHH
Q 011328          170 --HAKLSML-------RNATWTLSNFCRGK-PQPLFEQTRPALPALERLIHSND-------------DEVLTDACWALSY  226 (488)
Q Consensus       170 --~~~~~v~-------~~a~~~L~~l~~~~-~~~~~~~~~~~~~~l~~ll~~~~-------------~~v~~~al~~L~~  226 (488)
                        .++....       .-.+.....|...+ |.--.......++...++++.++             ..++...|..+.-
T Consensus       194 ~~~~~~~~l~~lf~vlll~~klfysLn~QDiPEFFEdnm~~wM~~F~k~l~~~~p~le~~~ee~~~l~~lka~ICEi~~L  273 (960)
T KOG1992|consen  194 RHANDAAALNILFGVLLLICKLFYSLNFQDIPEFFEDNMKTWMGAFHKLLTYDNPLLESDEEEATVLDKLKAQICEIFNL  273 (960)
T ss_pred             hcccchhHHHHHHHHHHHHHHHHHhhhcccchHHHHhhHHHHHHHHHHHHhccCcccccCcccccHHHHHHHHHHHHHHH
Confidence              1122211       12222233333322 22222233556667777776222             3456667777766


Q ss_pred             hccCCchhHHHHHHhCCHHHHHHhcCCCC-----cchHhHHHHHHhHhhcCCc--------------------------h
Q 011328          227 LSDGTNDKIQAVIEAGVCPRLVELLRHPS-----PSVLIPALRTVGNIVTGDD--------------------------M  275 (488)
Q Consensus       227 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~-----~~v~~~a~~~L~~l~~~~~--------------------------~  275 (488)
                      .+...++..+.++. +++...-.+|.+-.     +.+...|+..|.+++....                          .
T Consensus       274 Y~~kYeEef~~fl~-~fv~~~W~LL~~~s~~~kyD~Lvs~Al~FLt~V~~r~~y~~~F~~~~vl~~i~e~VvlpN~~lR~  352 (960)
T KOG1992|consen  274 YATKYEEEFQPFLP-DFVTATWNLLVSTSPDTKYDYLVSKALQFLTSVSRRPHYAELFEGENVLAQICEKVVLPNLILRE  352 (960)
T ss_pred             HHHhhHHHHHhhHH-HHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHhhhhhHhhhcchHHHHHHHHhhcccccccch
Confidence            66666555554443 34444445554422     2344456666666664211                          1


Q ss_pred             hhHHHhhCCChHHHHHHhcccchhhH-HHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHH-h--cCChhHHHHHHHHH
Q 011328          276 QTQCIINHQALPCLLDLLTQNYKKSI-KKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLL-L--NAEFEIKKEAAWAI  351 (488)
Q Consensus       276 ~~~~~~~~~~~~~L~~lL~~~~~~~v-~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll-~--~~~~~v~~~a~~aL  351 (488)
                      .-..+.+.+-++.+-+-|... +.+. |+.|+..+..|+...+.....++.. .+..++.-. .  +.++.-+..+....
T Consensus       353 eDeElFED~pleYiRRDlEGs-DvdTRRR~a~dlvrgL~~~fe~~vt~v~~~-~v~~~l~~y~~nPS~nWk~kd~aiyL~  430 (960)
T KOG1992|consen  353 EDEELFEDNPLEYIRRDLEGS-DVDTRRRAAIDLVRGLCKNFEGQVTGVFSS-EVQRLLDQYSKNPSGNWKKKDRAIYLV  430 (960)
T ss_pred             hhHHHhccCHHHHHHHhcccC-CcchhHHHHHHHHHHHHHHhcchhHHHHHH-HHHHHHHHhccCCCccccccchhhhhh
Confidence            112233445566666666666 4444 4567777778877544433333322 222232222 2  23666677777777


Q ss_pred             HHhccCCCHHHHHHHHH---CCChHHHH-----hhcC---CCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHH
Q 011328          352 SNATSGGSNEQIKFLVS---QGCIKPLC-----DLLN---CPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAI  420 (488)
Q Consensus       352 ~~l~~~~~~~~~~~l~~---~~~i~~L~-----~ll~---~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l  420 (488)
                      ..++..+.......-..   -++++.+.     ++..   .+.|-++..+++-+.   ..-...           ....+
T Consensus       431 talaik~~t~~~Gvtstn~lvdv~~Ff~~~ilp~L~s~~vn~~pilka~aIKy~~---~FR~ql-----------~~~~l  496 (960)
T KOG1992|consen  431 TALAIKGQTAKHGVTSTNELVDVVDFFANQILPDLLSPNVNEFPILKADAIKYIY---TFRNQL-----------GKEHL  496 (960)
T ss_pred             HHHHhhcchhhcceeeccccccHHHHHHHHhhHHhccCccccccchhhcccceee---eecccC-----------ChHHH
Confidence            77776542110000000   01111111     1122   122333333332221   111100           12222


Q ss_pred             HhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCC
Q 011328          421 DDAEGLEKIENLQSHDNTEIYEKAVKILETYWVEEDE  457 (488)
Q Consensus       421 ~~~g~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~~~  457 (488)
                      ..  .+..+.+.+..++.-|...|+..+++++.-.++
T Consensus       497 m~--~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~  531 (960)
T KOG1992|consen  497 MA--LLPRLIRFLEAESRVVHSYAAIAIEKLLTVREN  531 (960)
T ss_pred             HH--HHHHHHHhccCcchHHHHHHHHHHHhccccccC
Confidence            22  367788888888899999999999999988776

>smart00288 VHS Domain present in VPS-27, Hrs and STAM

Probab=90.54  E-value=1.1  Score=35.84  Aligned_cols=74  Identities=9%  Similarity=0.021  Sum_probs=60.3

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChh-HHHHHHHHHHHhcC
Q 011328           30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQ-LQFEAAWALTNIAS  103 (488)
Q Consensus        30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~-v~~~a~~~L~~l~~  103 (488)
                      ..+..|.+.|++.++.+++.|+..|-.++.+-.......+...+++..|++++.+..... ++..++..+...+.
T Consensus        37 ~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~  111 (133)
T smart00288       37 DAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD  111 (133)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence            567788899999999999999999999888754555677778889999999998765434 88888888877665

Unpublished observations. Domain of unknown function.

>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=90.40  E-value=2.8  Score=41.46  Aligned_cols=103  Identities=14%  Similarity=0.076  Sum_probs=73.3

Q ss_pred             cCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhH
Q 011328           72 SGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR  151 (488)
Q Consensus        72 ~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~  151 (488)
                      .|.+..+++.+.+++ ..+|..++.+|+.+.. .-.-.+..+-+|.+..|.+-+-+..+.+|..|+.+|+.+-+....-.
T Consensus        90 ~~~~~h~lRg~eskd-k~VR~r~lqila~~~d-~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~nee  167 (885)
T COG5218          90 AGTFYHLLRGTESKD-KKVRKRSLQILALLSD-VVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEE  167 (885)
T ss_pred             HHHHHHHHhcccCcc-hhHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChH
Confidence            467788888888888 8999999999999987 33333344455777777776767789999999999998864433211


Q ss_pred             HHHHhcCChHHHHHHhcccccHhHHHHHHH
Q 011328          152 DLVLSNGALMPLLAQFNEHAKLSMLRNATW  181 (488)
Q Consensus       152 ~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~  181 (488)
                      ..     ....+...+..+++.++++.|+.
T Consensus       168 n~-----~~n~l~~~vqnDPS~EVRr~all  192 (885)
T COG5218         168 NR-----IVNLLKDIVQNDPSDEVRRLALL  192 (885)
T ss_pred             HH-----HHHHHHHHHhcCcHHHHHHHHHH
Confidence            12     23356667767777788876654

>smart00638 LPD_N Lipoprotein N-terminal Domain

Probab=90.34  E-value=16  Score=37.67  Aligned_cols=136  Identities=19%  Similarity=0.180  Sum_probs=82.6

Q ss_pred             hchHHHHHHhhccC----ChhHHHHHHHHHHHhcc----CCchhHHHHHHhCCHHHHHHhc----CCCCcchHhHHHHHH
Q 011328          199 RPALPALERLIHSN----DDEVLTDACWALSYLSD----GTNDKIQAVIEAGVCPRLVELL----RHPSPSVLIPALRTV  266 (488)
Q Consensus       199 ~~~~~~l~~ll~~~----~~~v~~~al~~L~~l~~----~~~~~~~~~~~~~~l~~L~~lL----~~~~~~v~~~a~~~L  266 (488)
                      ...+..+..++.++    +..++..++-+++.+..    ..+..-. .+-..+++.+...|    ...+...+...+.+|
T Consensus       392 ~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaL  470 (574)
T smart00638      392 EEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPD-FVLEELLKYLHELLQQAVSKGDEEEIQLYLKAL  470 (574)
T ss_pred             HHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCCh-hhHHHHHHHHHHHHHHHHhcCCchheeeHHHhh
Confidence            34566677777643    45677777777776663    1211101 11123455555544    334556677889999


Q ss_pred             hHhhcCCchhhHHHhhCCChHHHHHHhc--ccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC--Chh
Q 011328          267 GNIVTGDDMQTQCIINHQALPCLLDLLT--QNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA--EFE  342 (488)
Q Consensus       267 ~~l~~~~~~~~~~~~~~~~~~~L~~lL~--~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~--~~~  342 (488)
                      +|+....           .+..+...+.  ......+|..|+++|..++...+..        +-+.++.++.+.  +++
T Consensus       471 GN~g~~~-----------~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~--------v~~~l~~i~~n~~e~~E  531 (574)
T smart00638      471 GNAGHPS-----------SIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRK--------VQEVLLPIYLNRAEPPE  531 (574)
T ss_pred             hccCChh-----------HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchH--------HHHHHHHHHcCCCCChH
Confidence            9986522           2344444443  2225689999999999998644443        344556666654  778


Q ss_pred             HHHHHHHHHHHh
Q 011328          343 IKKEAAWAISNA  354 (488)
Q Consensus       343 v~~~a~~aL~~l  354 (488)
                      +|..|..+|...
T Consensus       532 vRiaA~~~lm~t  543 (574)
T smart00638      532 VRMAAVLVLMET  543 (574)
T ss_pred             HHHHHHHHHHhc
Confidence            998888777655

>PF08167 RIX1: rRNA processing/ribosome biogenesis

Probab=89.97  E-value=7.1  Score=32.50  Aligned_cols=113  Identities=16%  Similarity=0.191  Sum_probs=71.5

Q ss_pred             CCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhC--CCHHHHHHhhCC-CCHHHHHHHHHHHhhhh---CC
Q 011328           73 GVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDH--GAVPIFVRLLSS-PTDDVREQAVWALGNVA---GD  146 (488)
Q Consensus        73 ~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~--g~i~~L~~~L~~-~~~~v~~~a~~~L~~l~---~~  146 (488)
                      ..+..+..+|++++ ++-|-.++..+..++..++  .+.+.+.  ..+..++..|+. +.+.+.+.++.++..+.   .+
T Consensus        25 ~l~~ri~~LL~s~~-~~~rw~G~~Ll~~~~~~~~--~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~  101 (165)
T PF08167_consen   25 KLVTRINSLLQSKS-AYSRWAGLCLLKVTVEQCS--WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRG  101 (165)
T ss_pred             HHHHHHHHHhCCCC-hhhHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            45667888999988 7888888888888887432  2333333  357788888887 56778888888888876   34


Q ss_pred             CchhHHHHHhcC---ChHHHHHHhcccccHhHHHHHHHHHHHhhcCCC
Q 011328          147 SPKCRDLVLSNG---ALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP  191 (488)
Q Consensus       147 ~~~~~~~~~~~~---~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~  191 (488)
                      .++..+.+....   +++.++.++.   +......++.+|..+....+
T Consensus       102 ~p~l~Rei~tp~l~~~i~~ll~l~~---~~~~~~~~l~~L~~ll~~~p  146 (165)
T PF08167_consen  102 KPTLTREIATPNLPKFIQSLLQLLQ---DSSCPETALDALATLLPHHP  146 (165)
T ss_pred             CCchHHHHhhccHHHHHHHHHHHHh---ccccHHHHHHHHHHHHHHCC
Confidence            444433333222   2334444441   14556677777777665543

>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule)

Probab=89.89  E-value=1.9  Score=34.48  Aligned_cols=74  Identities=15%  Similarity=0.095  Sum_probs=59.6

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCC--CChhHHHHHHHHHHHhcC
Q 011328           30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRD--DFPQLQFEAAWALTNIAS  103 (488)
Q Consensus        30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~--~~~~v~~~a~~~L~~l~~  103 (488)
                      ..+..|.+.|+++++.+++.|+..|-.+..+-.......+....++..|++++...  ..+.++..++..+...+.
T Consensus        37 ~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~  112 (133)
T cd03561          37 EAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSE  112 (133)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence            56778889999999999999999999988776444556666668888899999763  337899999998888765

It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me

>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3

Probab=89.68  E-value=24  Score=35.49  Aligned_cols=161  Identities=14%  Similarity=0.014  Sum_probs=93.6

Q ss_pred             ChHHHHHHhccc-chhhHHHHHHHHH---HHHhcC-CHHHH---HHHHHcCChHHHHH----HHhcCChhHHHHHHHHHH
Q 011328          285 ALPCLLDLLTQN-YKKSIKKEACWTI---SNITAG-NVNQI---QAIIEAGIIGPLVN----LLLNAEFEIKKEAAWAIS  352 (488)
Q Consensus       285 ~~~~L~~lL~~~-~~~~v~~~a~~~L---~nl~~~-~~~~~---~~l~~~~~l~~L~~----ll~~~~~~v~~~a~~aL~  352 (488)
                      ++..+..-+.+. .+.++|..++..+   .....+ .+...   ...+..++.+.+-.    --...+...|..+..+|+
T Consensus       320 ~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~lG  399 (501)
T PF13001_consen  320 ILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETLG  399 (501)
T ss_pred             HHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHHHHHH
Confidence            334444444333 1456666666666   444442 23332   33444566665510    011236789999999999


Q ss_pred             HhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHh
Q 011328          353 NATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENL  432 (488)
Q Consensus       353 ~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l  432 (488)
                      .++.....-..   .+-+++..|.+-++.++++++..+-++|..+..........         ...-........+...
T Consensus       400 ~L~~~~p~l~~---~d~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~~~~~---------~~~~~~~~~~~l~~~~  467 (501)
T PF13001_consen  400 LLAKRAPSLFS---KDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKDLPDD---------EDEQKRLLLELLLLSY  467 (501)
T ss_pred             HHHccCccccc---ccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhccccc---------hhHHHHHHHHHHHHhh
Confidence            99986532211   12357888888888899999999999999887654432210         0000000001122233


Q ss_pred             hcCCCHHHHHHHHHHHHHhcCCCCC
Q 011328          433 QSHDNTEIYEKAVKILETYWVEEDE  457 (488)
Q Consensus       433 ~~~~~~~v~~~a~~~l~~~~~~~~~  457 (488)
                      ..+....++..|.+..+++|+.++-
T Consensus       468 ~~~~~~~~R~~avk~an~~fpf~d~  492 (501)
T PF13001_consen  468 IQSEVRSCRYAAVKYANACFPFSDV  492 (501)
T ss_pred             ccchhHHHHHHHHHHHHHhCCccch
Confidence            3455667899999999999988753

4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].

>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor

Probab=89.22  E-value=10  Score=39.57  Aligned_cols=158  Identities=15%  Similarity=0.187  Sum_probs=109.6

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh
Q 011328           30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT  109 (488)
Q Consensus        30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~  109 (488)
                      ..|..|+..|.|.+..+...+-..+...+... .+.       -++..|+...-+..+    ..++.+|..+-  .|..+
T Consensus         4 ~~~~~l~~~l~s~~~~~~~~~~~~~~~~~~~~-~~~-------~l~~~l~~y~~~t~s----~~~~~il~~~~--~P~~K   69 (668)
T PF04388_consen    4 ASITELLSLLESNDLSVLEEIKALLQELLNSD-REP-------WLVNGLVDYYLSTNS----QRALEILVGVQ--EPHDK   69 (668)
T ss_pred             ccHHHHHHHhcCCchhhHHHHHHHHHHHhhcc-chH-------HHHHHHHHHHhhcCc----HHHHHHHHhcC--CccHH
Confidence            35677999999999888888888888876654 221       135566665444332    34455565442  23212


Q ss_pred             HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcC
Q 011328          110 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG  189 (488)
Q Consensus       110 ~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~  189 (488)
                            .++..|-.++..  +..|-.++..|+.+....+..-..+.+...+..|++.|..+.+..+...|+.+|..|.-.
T Consensus        70 ------~~~~~l~~~~~~--~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~  141 (668)
T PF04388_consen   70 ------HLFDKLNDYFVK--PSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPH  141 (668)
T ss_pred             ------HHHHHHHHHHcC--chhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhcc
Confidence                  234556666654  567888999999999887777778888899999999998888999999999999988876


Q ss_pred             CCCCChhhhhchHHHHHHhh
Q 011328          190 KPQPLFEQTRPALPALERLI  209 (488)
Q Consensus       190 ~~~~~~~~~~~~~~~l~~ll  209 (488)
                      .+.........++.....++
T Consensus       142 ip~~l~~~L~~Lf~If~Rl~  161 (668)
T PF04388_consen  142 IPSSLGPHLPDLFNIFGRLL  161 (668)
T ss_pred             ccchhhHHHHHHHHHHHHHH
Confidence            65554445555565555555

The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].

>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins

Probab=88.96  E-value=1.8  Score=34.78  Aligned_cols=74  Identities=12%  Similarity=0.023  Sum_probs=60.1

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcC-----CCChhHHHHHHHHHHHhcC
Q 011328           30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSR-----DDFPQLQFEAAWALTNIAS  103 (488)
Q Consensus        30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~-----~~~~~v~~~a~~~L~~l~~  103 (488)
                      ..+..|.+.|++.++.+++.|+..|-.+..+-.......+...+++..|++++..     ...+.|+...+..+...+.
T Consensus        38 ~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~  116 (139)
T cd03567          38 LAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL  116 (139)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence            5577889999999999999999999998876655566777788999999999963     1237899998888877664

The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.

>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []

Probab=88.94  E-value=35  Score=36.31  Aligned_cols=116  Identities=14%  Similarity=0.148  Sum_probs=72.9

Q ss_pred             ChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhcc
Q 011328          328 IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNM  407 (488)
Q Consensus       328 ~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~  407 (488)
                      +...+...+..++..+....+.++.++..-......+   ...-.+.-..-.+..-..+......+|.++....+..   
T Consensus       442 lW~~l~~~~~~~~~~la~~lL~~~~~l~~l~~~~~~~---~~~~~~~~~~~~N~~~~~~~~~~~~il~rls~~~~~~---  515 (727)
T PF12726_consen  442 LWKALLKSLDSDNPDLAKALLKSLSPLIGLEKFPPKK---EKDELDPAKTQFNKSLGQITDLISQILERLSDFDPSH---  515 (727)
T ss_pred             HHHHHHHhhcCCChHHHHHHHHHHHHhccccccCCcc---cccCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH---
Confidence            4556666777777778888888888886433111000   0011111111111111234455556666665554433   


Q ss_pred             CCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCC
Q 011328          408 GNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVEEDE  457 (488)
Q Consensus       408 ~~~~~~~~~~~~l~~~g~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~~~  457 (488)
                              ....+.+.+....+-.+.=|+++++++.|..++...|+.+.-
T Consensus       516 --------L~~l~~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d~~~R  557 (727)
T PF12726_consen  516 --------LKELLSDPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFDVDGR  557 (727)
T ss_pred             --------HHHHHcCcchhhHHHhheeCCChHHHHHHHHHHHHHhcCCcH
Confidence                    578888889999999999999999999999999999975443

The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.

>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule)

Probab=88.88  E-value=3.8  Score=32.69  Aligned_cols=75  Identities=8%  Similarity=-0.025  Sum_probs=62.0

Q ss_pred             ChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCC---CCHHHHHHHHHHHHHHHHhhh
Q 011328          328 IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNC---PDPRIVTVCLEGLENILKAGE  402 (488)
Q Consensus       328 ~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~---~~~~v~~~al~~L~~l~~~~~  402 (488)
                      ++..|..-++++++.++..|+..|-.++.++.......+.....+..|..++..   .++.++..++..+........
T Consensus        38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~  115 (133)
T cd03561          38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESFG  115 (133)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence            566677788889999999999999999999988888888887888889999875   467899998888877655433

It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me

>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain

Probab=88.51  E-value=4.6  Score=31.43  Aligned_cols=87  Identities=17%  Similarity=0.213  Sum_probs=57.6

Q ss_pred             HHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHC-CChHHHHhhcCCCC---
Q 011328          308 TISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQ-GCIKPLCDLLNCPD---  383 (488)
Q Consensus       308 ~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~-~~i~~L~~ll~~~~---  383 (488)
                      =|.+++..++.....     ++..|.+-|+++++.|+.+++.+|..++..+.+++...+... ..+..+.+.-..+|   
T Consensus        24 Eia~~t~~s~~~~~e-----i~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~   98 (122)
T cd03572          24 EIAKLTRKSVGSCQE-----LLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLK   98 (122)
T ss_pred             HHHHHHHcCHHHHHH-----HHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCccc
Confidence            344555544443332     566788888989999999999999999999988877776553 23344333322222   


Q ss_pred             -----HHHHHHHHHHHHHHHH
Q 011328          384 -----PRIVTVCLEGLENILK  399 (488)
Q Consensus       384 -----~~v~~~al~~L~~l~~  399 (488)
                           ..||..|-+++..++.
T Consensus        99 Gd~~~~~VR~~A~El~~~if~  119 (122)
T cd03572          99 GDSLNEKVREEAQELIKAIFS  119 (122)
T ss_pred             CcchhHHHHHHHHHHHHHHhc
Confidence                 3577777777776654

The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t

>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length

Probab=88.26  E-value=25  Score=33.81  Aligned_cols=220  Identities=15%  Similarity=0.154  Sum_probs=123.4

Q ss_pred             cHhHHHHHHHHHHHhhcCCCCC---ChhhhhchHHHHHHhhccC--ChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHH
Q 011328          172 KLSMLRNATWTLSNFCRGKPQP---LFEQTRPALPALERLIHSN--DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPR  246 (488)
Q Consensus       172 ~~~v~~~a~~~L~~l~~~~~~~---~~~~~~~~~~~l~~ll~~~--~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~  246 (488)
                      +..+..+|+.+++.+..+..-.   ......-++...+..+.++  +..+....+++|..---..     .++....+..
T Consensus        59 ~~~L~~qALkll~~~l~~~~i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~~-----~~~~~~~~~~  133 (372)
T PF12231_consen   59 DSRLVIQALKLLGFFLYHPEIVSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFSP-----KIMTSDRVER  133 (372)
T ss_pred             chHHHHHHHHHHHHHHccHHHHhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCC-----cccchhhHHH
Confidence            6678889999999888765211   1112223555566666543  4567777777776532221     1223333444


Q ss_pred             HHHhc---C--CCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhc--C-CHH
Q 011328          247 LVELL---R--HPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA--G-NVN  318 (488)
Q Consensus       247 L~~lL---~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~--~-~~~  318 (488)
                      ++..+   .  -++..+....+.++.++....+.....-. ...++.++..+-+. ...+|..|...+..+..  + +..
T Consensus       134 l~~~l~~i~~~~~s~si~~erL~i~~~ll~q~p~~M~~~~-~~W~~~l~~~l~~~-~k~ir~~a~~l~~~~~~~l~~~~~  211 (372)
T PF12231_consen  134 LLAALHNIKNRFPSKSIISERLNIYKRLLSQFPQQMIKHA-DIWFPILFPDLLSS-AKDIRTKAISLLLEAKKCLGPNKE  211 (372)
T ss_pred             HHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhc-chHHHHHHHHHHHHHHHHhChhHH
Confidence            44443   2  24567888889999998876654422221 13677787777676 66777776655555543  2 122


Q ss_pred             HHHH---HHHc----C-----ChHHHHHHHhcCChhHHHHHHHHHHHhccCCC-HHHHHHHHHCCChHHHHhhcCCCCHH
Q 011328          319 QIQA---IIEA----G-----IIGPLVNLLLNAEFEIKKEAAWAISNATSGGS-NEQIKFLVSQGCIKPLCDLLNCPDPR  385 (488)
Q Consensus       319 ~~~~---l~~~----~-----~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~-~~~~~~l~~~~~i~~L~~ll~~~~~~  385 (488)
                      ..+.   ..+.    +     +.+.|..++.+++....-.-+|...-+..... .+....+  +..+.....+++++++.
T Consensus       212 ~s~~~~~~~~~~~~~~~~~~~~~~~L~~mi~~~~~~~~a~~iW~~~i~LL~~~~~~~w~~~--n~wL~v~e~cFn~~d~~  289 (372)
T PF12231_consen  212 LSKSVLEDLQRSLENGKLIQLYCERLKEMIKSKDEYKLAMQIWSVVILLLGSSRLDSWEHL--NEWLKVPEKCFNSSDPQ  289 (372)
T ss_pred             HHHHHHHHhccccccccHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHhCCchhhccHhH--hHHHHHHHHHhcCCCHH
Confidence            1111   2221    2     23346666666333222222333333332222 1222222  23567777789999999


Q ss_pred             HHHHHHHHHHHHHHh
Q 011328          386 IVTVCLEGLENILKA  400 (488)
Q Consensus       386 v~~~al~~L~~l~~~  400 (488)
                      ++..|..+-..++..
T Consensus       290 ~k~~A~~aW~~liy~  304 (372)
T PF12231_consen  290 VKIQAFKAWRRLIYA  304 (372)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999888763

Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.

>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p []

Probab=87.78  E-value=6.4  Score=36.17  Aligned_cols=139  Identities=12%  Similarity=0.158  Sum_probs=80.9

Q ss_pred             CCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh-HHHHhCCCHHHHHH----hhC--------CCCHHHHHHHHHH
Q 011328           73 GVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT-RVVIDHGAVPIFVR----LLS--------SPTDDVREQAVWA  139 (488)
Q Consensus        73 ~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~-~~~~~~g~i~~L~~----~L~--------~~~~~v~~~a~~~  139 (488)
                      =++|.++.++.+.+ +.+|..++.++..+....+... ..+...|..+.+..    ++.        .++..+...+..+
T Consensus       119 liiP~iL~llDD~~-~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~  197 (282)
T PF10521_consen  119 LIIPPILNLLDDYS-PEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPA  197 (282)
T ss_pred             HHHhhHHHHhcCCC-HHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHH
Confidence            47899999999998 9999999999999998444333 23556665554444    333        2456677778888


Q ss_pred             HhhhhCC---C-chhHHHHHhcCChHHHHHHhcccc---cHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccC
Q 011328          140 LGNVAGD---S-PKCRDLVLSNGALMPLLAQFNEHA---KLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSN  212 (488)
Q Consensus       140 L~~l~~~---~-~~~~~~~~~~~~l~~L~~ll~~~~---~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~  212 (488)
                      +..++..   . ...+......-.-+.++..+....   .+.++...+..+..+...-..........+++.+.+.+.++
T Consensus       198 L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~~l~~~l~np  277 (282)
T PF10521_consen  198 LLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQRIIPVLSQILENP  277 (282)
T ss_pred             HHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCC
Confidence            8877431   1 111111111111112333332222   36666666666666655433444445566666666666554

>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=87.66  E-value=35  Score=34.80  Aligned_cols=270  Identities=11%  Similarity=0.102  Sum_probs=137.3

Q ss_pred             ccHHHHHHHhc-CCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchh
Q 011328           30 ESLPAMVAGVW-SDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN  108 (488)
Q Consensus        30 ~~i~~l~~~L~-s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~  108 (488)
                      -.++.+.+.|- +.|+..|.+|=.+|..+..+  ++         .+..-.-++..++.+.-+.-|..+|..+..+... 
T Consensus         5 aqLe~lCk~LY~s~D~~~R~~AE~~L~e~s~s--pe---------clskCqlll~~gs~pYs~mlAst~L~Klvs~~t~-   72 (1082)
T KOG1410|consen    5 AQLESLCKDLYESTDPTARHRAEKALAELSES--PE---------CLSKCQLLLERGSYPYSQMLASTCLMKLVSRKTP-   72 (1082)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHccC--HH---------HHHHHHHHHHcCCCchHHHHHHHHHHHHHcCCCC-
Confidence            34566777775 68999999999999996543  22         2333344566666578888888999888774321 


Q ss_pred             hHHHHhCCCHHHHHHhhCCCC----HHHHHHHHHHHhhhhCCCc--hhHHHHHhcCChHHHHHHhcccccHhHHHHHHHH
Q 011328          109 TRVVIDHGAVPIFVRLLSSPT----DDVREQAVWALGNVAGDSP--KCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWT  182 (488)
Q Consensus       109 ~~~~~~~g~i~~L~~~L~~~~----~~v~~~a~~~L~~l~~~~~--~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~  182 (488)
                      .......++-..++..+....    +-+....+..++.+..-..  ..++...=.+.+..+.+.+ +..+.+--.-++..
T Consensus        73 lpl~qrldir~Yilnylat~~Pk~~~fvi~sLiQl~arlTK~gW~d~~k~~y~FRd~v~~~~kfl-~~~~ve~~~igv~i  151 (1082)
T KOG1410|consen   73 LPLEQRLDIRNYILNYLATGAPKLAPFVIQSLIQLFARLTKLGWFDQQKDEYVFRDPVDDVTKFL-QMDNVEHCIIGVQI  151 (1082)
T ss_pred             CcHHHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHhccccccccccchhhhhHHHHHHHh-ccCchHHHHHHHHH
Confidence            111111233456666776643    3344445555555543210  0011112223556666777 33333333444555


Q ss_pred             HHHhhcCC-------CCCChh---------hhhchHHHHHHhhccC------C---hhHHHHHHHHHHHhc------cC-
Q 011328          183 LSNFCRGK-------PQPLFE---------QTRPALPALERLIHSN------D---DEVLTDACWALSYLS------DG-  230 (488)
Q Consensus       183 L~~l~~~~-------~~~~~~---------~~~~~~~~l~~ll~~~------~---~~v~~~al~~L~~l~------~~-  230 (488)
                      |..+...-       |.....         ....++..-..+++..      |   ..+...++..-.+..      .. 
T Consensus       152 LsqLvqemN~~~~~~p~tkHRkias~FRD~sL~~vf~laln~L~~~~~~nlnd~~q~~L~~~vL~L~l~Cl~FDfiGss~  231 (1082)
T KOG1410|consen  152 LSQLVQEMNQADGMDPSTKHRKIASSFRDDSLFDVFSLALNLLKDNVDLNLNDRAQLGLLMQVLKLNLNCLNFDFIGSST  231 (1082)
T ss_pred             HHHHHHHhhCCCCCCcchHHHHHHhhhhhhHHHHHHHHHHHHHHHhcccCcccHhHhhHHHHHHHHHhhhcccccccccc
Confidence            55554321       110000         0112222223333311      1   122222222221111      11 


Q ss_pred             ------------CchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcC-----CchhhHHHhhCCChHHHHHHh
Q 011328          231 ------------TNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTG-----DDMQTQCIINHQALPCLLDLL  293 (488)
Q Consensus       231 ------------~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~-----~~~~~~~~~~~~~~~~L~~lL  293 (488)
                                  +......+.+...++.+.++..+-.+.....++.||..+++-     +...+...+. ..++-..+++
T Consensus       232 DEssed~ctVQIPTsWRs~f~d~stlqlfFdly~slp~~~S~~alsclvqlASvRRsLFN~aeRa~yl~-~Lv~Gvk~il  310 (1082)
T KOG1410|consen  232 DESSEDLCTVQIPTSWRSSFLDSSTLQLFFDLYHSLPPELSELALSCLVQLASVRRSLFNGAERAKYLQ-HLVEGVKRIL  310 (1082)
T ss_pred             ccccccccceecCcHHHHHhcCchHHHHHHHHhccCCchhhHHHHHHHHHHHHHHHHHhCCHHHHHHHH-HHHHHHHHHH
Confidence                        111233456667888899999888888999999999999862     2222222221 3444455566


Q ss_pred             cccc---hhhHHHHHHHHHHHHh
Q 011328          294 TQNY---KKSIKKEACWTISNIT  313 (488)
Q Consensus       294 ~~~~---~~~v~~~a~~~L~nl~  313 (488)
                      .++.   ++.--.+-|+.++.+-
T Consensus       311 ~np~~LsD~~nyHeFCRllaRlk  333 (1082)
T KOG1410|consen  311 ENPQGLSDPANYHEFCRLLARLK  333 (1082)
T ss_pred             hCCcCCCCcchHHHHHHHHHHHH
Confidence            5442   3444455666666553

>smart00288 VHS Domain present in VPS-27, Hrs and STAM

Probab=87.28  E-value=2.7  Score=33.50  Aligned_cols=80  Identities=16%  Similarity=0.256  Sum_probs=61.5

Q ss_pred             ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCC-C-HHHHHHHHHHH
Q 011328          371 CIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHD-N-TEIYEKAVKIL  448 (488)
Q Consensus       371 ~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~~-~-~~v~~~a~~~l  448 (488)
                      ++..|..-+.++++.++..++..|..+++.+...           |...+.+.+.++.|..+...+ + +.|++++..++
T Consensus        38 a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~-----------f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li  106 (133)
T smart00288       38 AVRLLKKRLNNKNPHVALLALTLLDACVKNCGSK-----------FHLEVASKEFLNELVKLIKPKYPLPLVKKRILELI  106 (133)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHH-----------HHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence            4667778888899999999999999999875432           677778888888899886553 3 44999999999


Q ss_pred             HHhcCCCCCCCCC
Q 011328          449 ETYWVEEDEDEPL  461 (488)
Q Consensus       449 ~~~~~~~~~~~~~  461 (488)
                      ........++...
T Consensus       107 ~~W~~~f~~~~~~  119 (133)
T smart00288      107 QEWADAFKNDPDL  119 (133)
T ss_pred             HHHHHHHcCCCCc
Confidence            8877766553333

Unpublished observations. Domain of unknown function.

>PF12463 DUF3689: Protein of unknown function (DUF3689) ; InterPro: IPR022162 This family of proteins is found in eukaryotes

Probab=87.24  E-value=24  Score=32.59  Aligned_cols=105  Identities=11%  Similarity=0.200  Sum_probs=76.1

Q ss_pred             hHHHHHHHHHHHHhcCCHHHHH---------------------HHHHcCChHHHHHHHhcC--ChhHHHHHHHHHHHhcc
Q 011328          300 SIKKEACWTISNITAGNVNQIQ---------------------AIIEAGIIGPLVNLLLNA--EFEIKKEAAWAISNATS  356 (488)
Q Consensus       300 ~v~~~a~~~L~nl~~~~~~~~~---------------------~l~~~~~l~~L~~ll~~~--~~~v~~~a~~aL~~l~~  356 (488)
                      .+|..-++.+.+++.+......                     .--+.|++..+++.+...  +...|-.-+.|+-.+..
T Consensus        47 ~lKiQfLRlvh~f~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gLl~kIi~~l~~e~~~s~~RfwLa~cVESfLR  126 (303)
T PF12463_consen   47 ILKIQFLRLVHSFCDHDSNNSAIISELLIPSVESELNSNKLAECKEKKGLLSKIIHVLKKEPIDSSYRFWLARCVESFLR  126 (303)
T ss_pred             HHHHHHHHHHHHHhccccchhHHHHHhcCccccccccccccccccccccHHHHHHHHHHhCCCchhHHHHHHHHHHHHHc
Confidence            4677777888888763211110                     001356788888887765  66788889999999999


Q ss_pred             CCCH-HHHHHHHHCCChHHHHhhcCCC---CHHHHHHHHHHHHHHHHhhhhh
Q 011328          357 GGSN-EQIKFLVSQGCIKPLCDLLNCP---DPRIVTVCLEGLENILKAGEAE  404 (488)
Q Consensus       357 ~~~~-~~~~~l~~~~~i~~L~~ll~~~---~~~v~~~al~~L~~l~~~~~~~  404 (488)
                      +.+. ....++.+.|+++.++..+-++   +..+.+.+...|+.+++.....
T Consensus       127 g~t~~~~Q~fl~~~GLLe~lv~eil~~~~~~~~v~Q~~FDLLGELiK~n~~~  178 (303)
T PF12463_consen  127 GATSYADQAFLAERGLLEHLVSEILSDGCMSQEVLQSNFDLLGELIKFNRDA  178 (303)
T ss_pred             CCCcHHHHHHHHhcchHHHHHHHHhcCccchHHHHHHHHHHHHHHHCCCHHH
Confidence            8877 5566889999999999966644   3468888999999998876543

Proteins in this family are typically between 399 and 797 amino acids in length.

>KOG1988 consensus Uncharacterized conserved protein [Function unknown]

Probab=86.70  E-value=45  Score=35.07  Aligned_cols=277  Identities=12%  Similarity=0.102  Sum_probs=159.4

Q ss_pred             CcchhhhHHHHhhcCCCCChhhHHHHhhhccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHH
Q 011328            1 MLWCWIDCFVCFSLLKPMDPMFFIIQLQLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIE   80 (488)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~   80 (488)
                      |..|.+.-++...+..+-+.-..+      ....+=+.|+++....+-.+...+.++-...+ ..  .++++ .+=.|..
T Consensus         1 ~~~~~~~~~~~~~~~~~~e~s~~a------~~~~ldkGlr~~~t~eqpeavvr~~RLFek~P-fp--ifiNs-~llrLaD   70 (970)
T KOG1988|consen    1 SAACAMESSIKLEKSLESENSVNA------VLMELDKGLRSGKTSEQPEAVVRFPRLFEKYP-FP--IFINS-QLLRLAD   70 (970)
T ss_pred             CCcchhhhHHhhhhccccccchhH------HHHHHhhcccccccccchHHHHHHHHHHhhCC-ch--hhhhH-HHHHHHH
Confidence            456777777776665554443232      23345567777777777778888887665442 21  33332 3345566


Q ss_pred             hhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHh-CCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCC
Q 011328           81 FLSRDDFPQLQFEAAWALTNIASGTSENTRVVID-HGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGA  159 (488)
Q Consensus        81 lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~  159 (488)
                      ....++ ..+|...+++...    +....+.+.. ...+..+....++.|+.-|..++.+++.+..--|+       .+.
T Consensus        71 aF~~Gn-~llRf~V~rv~~q----~g~hln~v~n~aE~lrri~~V~hsnDp~aRAllL~ilg~~s~lipE-------fn~  138 (970)
T KOG1988|consen   71 AFPVGN-NLLRFAVLRVDQQ----SGKHLNKVLNGAEFLRRIFYVDHSNDPVARALLLRILGQLSALIPE-------FNQ  138 (970)
T ss_pred             HhccCc-HHHHHHHHHHHhh----ccccchhhhhhhhhhheeEEeecCCCHHHHHHHHHHHHHhhhhccc-------ccc
Confidence            677777 6788777776652    2222333322 12333334455678999999999999998654443       344


Q ss_pred             hHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccC--ChhHHHHHHHHHHHhccCCchhHHH
Q 011328          160 LMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSN--DDEVLTDACWALSYLSDGTNDKIQA  237 (488)
Q Consensus       160 l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~--~~~v~~~al~~L~~l~~~~~~~~~~  237 (488)
                      ...++..-..+.++--.+.++.+..+++....    ....++...+-.++...  .......++.++..+..+...    
T Consensus       139 ~hhlIr~sl~S~helE~eaa~~Aaa~Faa~sk----~FA~si~gkis~mIef~d~~~~mkL~li~Vfs~M~c~at~----  210 (970)
T KOG1988|consen  139 VHHLIRISLDSHHELEVEAAEFAAACFAAQSK----DFACSICGKISDMIEFLDLPVPMKLSLIPVFSHMHCHATG----  210 (970)
T ss_pred             hhHHHHHHhcCccchhhHHHHHHHhhhhhhhh----hhHHHHHHHHHHHhhcccCCCCcchhHhHHHHHhcchhhh----
Confidence            55566554344444445667777777665431    11123333344444433  344556667777777644321    


Q ss_pred             HHHhCCHHHHHHhcCC-CCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhc
Q 011328          238 VIEAGVCPRLVELLRH-PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA  314 (488)
Q Consensus       238 ~~~~~~l~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~  314 (488)
                        -.......+.++.. +..+....-+.++++++...-.     .-.+-.+.+.+.++.+....++..+.|.+.+++.
T Consensus       211 --A~ra~~l~m~lv~~tps~d~~v~fL~stT~Lasrs~~-----ai~eq~d~l~q~~ked~~kivr~~vl~kl~~La~  281 (970)
T KOG1988|consen  211 --ASRAFGLCMSLVSGTPSIDRVVAFLYSTTNLASRSLV-----AISEQSDVLLQFLKEDERKIVRLKVLRKLDFLAK  281 (970)
T ss_pred             --hHHHHHHHHHHhcCCCcccceeeehhhhHHHHHHHHH-----HhHHHHHHHHHhhcCCchhHHHHHHHHHHHHHhh
Confidence              11333455555543 4444455667777777753221     1235567788888865477778888888887764

>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus

Probab=86.45  E-value=19  Score=30.62  Aligned_cols=72  Identities=19%  Similarity=0.252  Sum_probs=56.9

Q ss_pred             CCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchh
Q 011328           73 GVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC  150 (488)
Q Consensus        73 ~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~  150 (488)
                      ..++.++++..+++ ..++..|+.++..+....--+-.     ..+|.++.+..++++.++..|...+..+.+..+..
T Consensus         8 ryl~~Il~~~~~~~-~~vr~~Al~~l~~il~qGLvnP~-----~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~   79 (187)
T PF12830_consen    8 RYLKNILELCLSSD-DSVRLAALQVLELILRQGLVNPK-----QCVPTLIALETSPNPSIRSRAYQLLKELHEKHESL   79 (187)
T ss_pred             HHHHHHHHHHhCCC-HHHHHHHHHHHHHHHhcCCCChH-----HHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHH
Confidence            35677888888888 89999999999988873322211     24799999999999999999999999998765543

>KOG1848 consensus Uncharacterized conserved protein [Function unknown]

Probab=86.17  E-value=56  Score=36.46  Aligned_cols=269  Identities=13%  Similarity=0.115  Sum_probs=118.8

Q ss_pred             cHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccC---ChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHH
Q 011328          172 KLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSN---DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLV  248 (488)
Q Consensus       172 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~---~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~  248 (488)
                      ..+++.....++.++...........-..+++.+-......   ..++...+..++.-++.+.-.....-.-.++++.+.
T Consensus       855 ~~evr~~sl~~l~silet~ge~ll~~w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci~~lidtl~  934 (1610)
T KOG1848|consen  855 GVEVRISSLEALVSILETVGEHLLHGWQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCILDLIDTLL  934 (1610)
T ss_pred             cceeeHHHHHHHHHHHhccchhhccccHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHHHHHHHHHH
Confidence            44566667777777766542111111122222222222212   345566666666665543211111111114455555


Q ss_pred             HhcCC-CCcchHhHHHHHHhHhhcCCchhhHHHh----hCCChHHHHHHhcccchhhHHHHHHHHHH--HHhcCCHHHHH
Q 011328          249 ELLRH-PSPSVLIPALRTVGNIVTGDDMQTQCII----NHQALPCLLDLLTQNYKKSIKKEACWTIS--NITAGNVNQIQ  321 (488)
Q Consensus       249 ~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~----~~~~~~~L~~lL~~~~~~~v~~~a~~~L~--nl~~~~~~~~~  321 (488)
                      ..-+. .+-.+...|+..++++...-.......-    ....++.+..  ..+ ...+-.+++|.+.  +++....+. +
T Consensus       935 ~fs~QktdlNISltAi~lfWtvsDfl~~km~S~sed~~~~~~~e~~~s--s~~-~~~~l~e~lwi~ll~~L~~~~~ds-r 1010 (1610)
T KOG1848|consen  935 VFSRQKTDLNISLTAIGLFWTVSDFLKNKMFSTSEDSCAYNSVEDLYS--SMK-SKEILPEVLWIMLLVHLADLCEDS-R 1010 (1610)
T ss_pred             HHHhhhccccccHHHHHHHHHHHHHHHhhhhccchhhhhhcchhhhcc--ccc-chhhhhhHHHHHHHHHHHHHhccc-h
Confidence            55433 4566777787777777642111011111    1223333333  222 3345556665532  333211111 1


Q ss_pred             HHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHH----hhcCCCCHHHHHHHHHHHHHH
Q 011328          322 AIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLC----DLLNCPDPRIVTVCLEGLENI  397 (488)
Q Consensus       322 ~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~----~ll~~~~~~v~~~al~~L~~l  397 (488)
                      .-+.+|.+..+++++.++...+.. ++|..+-.-      ....+.+..-...--    +.++....+.....+.++.++
T Consensus      1011 ~eVRngAvqtlfri~~Shg~~l~~-~aW~s~~w~------vi~pLLd~~~~q~~~ewngkeiqkqwtet~~ltisgIakl 1083 (1610)
T KOG1848|consen 1011 AEVRNGAVQTLFRIFNSHGSKLGT-NAWASCCWL------VIMPLLDSQPIQNVSEWNGKEIQKQWTETSCLTISGIAKL 1083 (1610)
T ss_pred             HHHhhhHHHHHHHHHhhhcccCCh-hHHHHHHHH------HHHHHhccccccchhhhcchhHhhhhhhhhhhhHHHHHHH
Confidence            223456677777777665444332 222222110      001111100000000    001122234555666666666


Q ss_pred             HHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCC
Q 011328          398 LKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVEEDED  458 (488)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~~~~  458 (488)
                      +...-+.-.     ..|.+....++.  ++.+.++..+.++++...|.+.+..+.-.--+.
T Consensus      1084 f~e~fk~ll-----nln~f~~vwe~l--l~flkrl~s~~s~e~slsai~~~qell~sii~~ 1137 (1610)
T KOG1848|consen 1084 FSENFKLLL-----NLNGFLDVWEEL--LQFLKRLHSDISPEISLSAIKALQELLFSIIEF 1137 (1610)
T ss_pred             HHHHHHHHH-----hcccHHHHHHHH--HHHHHHHHhcCChHhHHHHHHHHHHHHHHHhhh
Confidence            543221110     122244444433  677788888899999999998887765543333

>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised

Probab=86.04  E-value=6.1  Score=37.46  Aligned_cols=217  Identities=19%  Similarity=0.141  Sum_probs=109.7

Q ss_pred             HHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCC-chhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCc
Q 011328           70 IQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGT-SENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSP  148 (488)
Q Consensus        70 ~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~  148 (488)
                      +...++..+..++..+.++......+.++..-...- .+     +...++..+.+-+.+..+.+|..-+..++.......
T Consensus        19 ~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~~~-----~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~   93 (339)
T PF12074_consen   19 LSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFLSSE-----LPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESP   93 (339)
T ss_pred             hHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCcC-----CCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhcc
Confidence            334566777777776655777777777776655411 11     122346777777777777799998888888875111


Q ss_pred             hhHHHHHhcCChHHHHHHhccc---ccHhHH---HHHHHHHHHhhcCC-CCCCh-------hhhhchHHHH--HHhhcc-
Q 011328          149 KCRDLVLSNGALMPLLAQFNEH---AKLSML---RNATWTLSNFCRGK-PQPLF-------EQTRPALPAL--ERLIHS-  211 (488)
Q Consensus       149 ~~~~~~~~~~~l~~L~~ll~~~---~~~~v~---~~a~~~L~~l~~~~-~~~~~-------~~~~~~~~~l--~~ll~~-  211 (488)
                      .....-.-...++.+++.+.+-   +.+..+   ..++.++..+.... +....       .....=-+.+  -+++.. 
T Consensus        94 ~~~~~~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~kps~ll~~kvyskl  173 (339)
T PF12074_consen   94 NSDSLKFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLALSSWKLDKIDSKNISFWSLALDPKPSFLLSEKVYSKL  173 (339)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHhccccchhhhhhhhhhhhhccCCCcchhcCHHHHhcc
Confidence            1011111123566676666321   111111   11222222211111 00000       0000000000  022222 


Q ss_pred             CChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCC--CcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHH
Q 011328          212 NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP--SPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCL  289 (488)
Q Consensus       212 ~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L  289 (488)
                      .+++-....++++..+..........-.....-..++.++-+.  .+.+|..|+.++..+...++..    +...++..+
T Consensus       174 ~~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~----l~~~li~~l  249 (339)
T PF12074_consen  174 ASEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPEL----LSKSLISGL  249 (339)
T ss_pred             CCHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHH----HHHHHHHHH
Confidence            3445555666666666644332211111224456777787776  7899999999999988877653    222345555


Q ss_pred             HHHhcc
Q 011328          290 LDLLTQ  295 (488)
Q Consensus       290 ~~lL~~  295 (488)
                      .+.+..
T Consensus       250 ~~~l~~  255 (339)
T PF12074_consen  250 WKWLSS  255 (339)
T ss_pred             HHHHHh
Confidence            555543

This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=85.89  E-value=19  Score=37.80  Aligned_cols=309  Identities=15%  Similarity=0.110  Sum_probs=152.4

Q ss_pred             CCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHH------HhC
Q 011328           42 DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVV------IDH  115 (488)
Q Consensus        42 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~------~~~  115 (488)
                      +|..+...+++.++.++..  +.....+++.+++..|+..=.-+   +.-...-.||..+.. ....-+.+      +-.
T Consensus       365 ~d~~l~~~~~k~~~~l~~h--~kfa~~fv~~~gi~kll~vpr~s---~~~~g~s~cly~~~~-~q~~mervc~~p~~v~~  438 (1516)
T KOG1832|consen  365 DDSPLLPDVMKLICALAAH--RKFAAMFVERRGILKLLAVPRVS---ETFYGLSSCLYTIGS-LQGIMERVCALPLVVIH  438 (1516)
T ss_pred             ccccccHHHHHHHHHHHHh--hHHHHHHHHhhhhHHHhcCCCch---hhhhhHHHHHHHHhh-hhhHHHHHhhccHHHHH
Confidence            4556667788888887765  46677788888887776552221   222333345555554 22222222      122


Q ss_pred             CCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcc-------c-----------ccHhHHH
Q 011328          116 GAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE-------H-----------AKLSMLR  177 (488)
Q Consensus       116 g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~-------~-----------~~~~v~~  177 (488)
                      .++..-+.++.-....-+.++...++... .-...-+.+-....+..|+.++..       +           .+.+...
T Consensus       439 ~vv~~~~~l~~cs~~~~~~~~~~ff~~~f-~frail~~fd~~d~l~~l~~~~~~~~~~~~~n~d~~l~e~~i~ss~Q~~~  517 (1516)
T KOG1832|consen  439 QVVKLAIELLDCSQDQARKNSALFFAAAF-VFRAILDAFDAQDSLQKLLAILKDAASVTGANTDRSLPEVMISSSKQMAF  517 (1516)
T ss_pred             HHHHHHHHHHhcchhhccchHHHHHHHHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHhccCcCccccHHHhhhhhhhhh
Confidence            34455555665543333333332222111 000112233334456666666521       1           1123334


Q ss_pred             HHHHHHHHhhcCC-----CC-CChhhhhchHHHHHHhhccCC------hhHHHHHHHHHHHhccCCc-------hhHHHH
Q 011328          178 NATWTLSNFCRGK-----PQ-PLFEQTRPALPALERLIHSND------DEVLTDACWALSYLSDGTN-------DKIQAV  238 (488)
Q Consensus       178 ~a~~~L~~l~~~~-----~~-~~~~~~~~~~~~l~~ll~~~~------~~v~~~al~~L~~l~~~~~-------~~~~~~  238 (488)
                      ..|.+|....+..     +. .......+..+..++-+..+.      ....+..++-+-.+....+       ...+.+
T Consensus       518 htC~alR~Yf~AHl~Ikve~~~k~~~~r~~~g~~~~~i~~~~~P~~~s~~~~e~I~~q~e~~~~~gp~f~~~~w~~aenf  597 (1516)
T KOG1832|consen  518 HTCFALRQYFRAHLLIKVESIRKSRISRGGVGSSMKNIRAAYKPLDISNEAVEAIFLQLEKDRRLGPTFVKAQWPAAENF  597 (1516)
T ss_pred             hhHHHHHHHHHHHHHHHHHhhhhhhcccCCCCccccccccCCCcchhhhhHHHHHHHHHHHHHHhChhhhhhcchHHHHH
Confidence            5555555433221     00 011111122222222222111      1223333333333322222       223456


Q ss_pred             HHhCCHHHHHHhcCCC--------CcchHhHHHHHHhHhhcCCchhhHHHhh--------CCChHHHHHHhcc---cchh
Q 011328          239 IEAGVCPRLVELLRHP--------SPSVLIPALRTVGNIVTGDDMQTQCIIN--------HQALPCLLDLLTQ---NYKK  299 (488)
Q Consensus       239 ~~~~~l~~L~~lL~~~--------~~~v~~~a~~~L~~l~~~~~~~~~~~~~--------~~~~~~L~~lL~~---~~~~  299 (488)
                      .+.+++..++.+...+        ..+....|+.+|.-+..- +.....+..        ..++..++..-..   ..++
T Consensus       598 lkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~i-P~iq~~La~~~~~n~~aydGiaIiL~~a~g~~~i~Dp  676 (1516)
T KOG1832|consen  598 LKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSI-PDIQKALAHATLSNNRAYDGIAIILDAANGSNSIVDP  676 (1516)
T ss_pred             HHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEec-chHHHHHHHHHhhcccccCceEEEeecccccccccCH
Confidence            6777888887776432        234556677777666553 333333321        1233444333221   1268


Q ss_pred             hHHHHHHHHHHHHhcCCHHHH-----------------------------------HHHHHcCChHHHHHHHhcCC----
Q 011328          300 SIKKEACWTISNITAGNVNQI-----------------------------------QAIIEAGIIGPLVNLLLNAE----  340 (488)
Q Consensus       300 ~v~~~a~~~L~nl~~~~~~~~-----------------------------------~~l~~~~~l~~L~~ll~~~~----  340 (488)
                      +++..|+.+|.|+....++.+                                   ..+..++++..|+++++...    
T Consensus       677 ei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~mw~~Vr~ndGIkiLl~Ll~~k~P~t~  756 (1516)
T KOG1832|consen  677 EIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQMWEAVRGNDGIKILLKLLQYKNPPTT  756 (1516)
T ss_pred             HHHHHHHhhhheeecCCCCcchhhhhhccccCCCccccccCCCchHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCc
Confidence            899999999999876432211                                   11223578999999998763    


Q ss_pred             -hhHHHHHHHHHHHhccCC
Q 011328          341 -FEIKKEAAWAISNATSGG  358 (488)
Q Consensus       341 -~~v~~~a~~aL~~l~~~~  358 (488)
                       ..+|.-|+.+|.-++...
T Consensus       757 aD~IRalAc~~L~GLaR~~  775 (1516)
T KOG1832|consen  757 ADCIRALACRVLLGLARDD  775 (1516)
T ss_pred             HHHHHHHHHHHHhccccCc
Confidence             358899999999999865

>KOG1822 consensus Uncharacterized conserved protein [Function unknown]

Probab=85.80  E-value=76  Score=36.80  Aligned_cols=273  Identities=15%  Similarity=0.138  Sum_probs=145.0

Q ss_pred             HHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCC-CCCChh
Q 011328          118 VPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPLFE  196 (488)
Q Consensus       118 i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~-~~~~~~  196 (488)
                      +..+...+...++..+-.+..+++.++...+.. ..+  ....+..+..+....|+-.|.--..++..+-++. ......
T Consensus       878 ~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~-~f~--a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~q  954 (2067)
T KOG1822|consen  878 LTLIVNSLINPNPKLRCAAAEALARLAQVVGSA-PFV--ASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQ  954 (2067)
T ss_pred             HHHHhhhhccCChHHHHHHHHHHHHHHHhcccc-chH--HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCch
Confidence            444555566678888888888888887544321 111  1245667777756666666666667777777665 344445


Q ss_pred             hhhchHHHHHHhhccC-ChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCc---chHhHHHH--------
Q 011328          197 QTRPALPALERLIHSN-DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSP---SVLIPALR--------  264 (488)
Q Consensus       197 ~~~~~~~~l~~ll~~~-~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~---~v~~~a~~--------  264 (488)
                      .....+..+..+.+++ .+.|+..++.++..+...........++ ..+..+..++.+..+   ++...--+        
T Consensus       955 hl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve-~tlsl~~~lLls~p~~~~ev~q~~~R~~~~~~~~ 1033 (2067)
T KOG1822|consen  955 HLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVE-PTLSLCLKLLLSVPTSHVEVHQCYNRCFNGDDDE 1033 (2067)
T ss_pred             hcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHH-HHHHHHHHHcCCCCcchhhhhhhhccccccchhH
Confidence            5566677788887766 5699999999999988665544443333 334444455443211   12211111        


Q ss_pred             -----HHhHhhcCCch-hhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhc
Q 011328          265 -----TVGNIVTGDDM-QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN  338 (488)
Q Consensus       265 -----~L~~l~~~~~~-~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~  338 (488)
                           +++.=...+.. .....+....+-...-++.++ ++.++.++..++.++-.-.+....   -.-+++.++.++.+
T Consensus      1034 ~alittlgpeL~~N~~~d~t~~~rts~la~~allls~~-d~lnqa~ai~clqqlhlFapr~~n---~~~lV~~L~~~l~s 1109 (2067)
T KOG1822|consen 1034 DALITTLGPELGPNGDKDSTSTLRTSCLAACALLLSHS-DPLNQAAAIKCLQQLHLFAPRHVN---LDSLVLQLCSLLSS 1109 (2067)
T ss_pred             HHHHHhcccccCCCCcccchhHHHHHHHHHHHHhcCCC-ccchHHHHHHHHHHHHhhcchhcc---HHHHHHHHHHHhcc
Confidence                 11111111111 000011111222222233444 778888888888877653222111   11256667777766


Q ss_pred             CChhHHHHHHHHHHHhccCCCHH---HHHHHH---------------HCCChHHHHhhcC-CCCHHHHHHHHHHHHHHH
Q 011328          339 AEFEIKKEAAWAISNATSGGSNE---QIKFLV---------------SQGCIKPLCDLLN-CPDPRIVTVCLEGLENIL  398 (488)
Q Consensus       339 ~~~~v~~~a~~aL~~l~~~~~~~---~~~~l~---------------~~~~i~~L~~ll~-~~~~~v~~~al~~L~~l~  398 (488)
                      ...-.|.....++..+......+   ....+.               +.|+--.+..+++ ..|.+..+.....+.+++
T Consensus      1110 ~~~i~r~~~~~clrql~~Re~sev~e~a~~L~~~~~~e~~~d~~~~pe~gLeg~l~~mld~e~d~~l~~~I~~tl~~~~ 1188 (2067)
T KOG1822|consen 1110 SYLILRRASFSCLRQLVQREASEVCEYAQLLAKTLAVETSPDANIRPEAGLEGALFIMLDTETDNKLLKNILETLSRML 1188 (2067)
T ss_pred             hhhhhhhhHHhhhhHHhHHHHHHHHHHHHHhhhhhhhhhChhhhcCccccchHHHHHHcCCchHHHHHHHHHHHHHHHH
Confidence            65445555555555554322111   111111               3444555555665 345667777777777743

>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []

Probab=85.79  E-value=27  Score=32.50  Aligned_cols=172  Identities=10%  Similarity=0.065  Sum_probs=94.7

Q ss_pred             CcchHhHHHHHHhHhhcCCchhhHHHhhC-----------CChHHHHHHhc------ccchhhHHHHHHHHHHHHhcCCH
Q 011328          255 SPSVLIPALRTVGNIVTGDDMQTQCIINH-----------QALPCLLDLLT------QNYKKSIKKEACWTISNITAGNV  317 (488)
Q Consensus       255 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-----------~~~~~L~~lL~------~~~~~~v~~~a~~~L~nl~~~~~  317 (488)
                      .-.+|.+|+.++.....++++....+++.           .....++..|-      +. ++---..|+.++..+..+++
T Consensus        51 ~f~lR~AA~~c~kay~~~N~~~q~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~~~~~~~~-dpy~~wfAa~il~hll~dn~  129 (312)
T PF04869_consen   51 PFDLRCAALYCFKAYFYNNEEGQTAFLSTLIPSYASGNSDDPIANLLTALLDYDSDLSL-DPYRCWFAAVILMHLLRDNP  129 (312)
T ss_dssp             -HHHHHHHHHHHHHHHTT-HHHHHHHHHTTSSTT--SS--SSSS-HHHHHT------SS--HHHHHHHHHHHHHHHTT-H
T ss_pred             chHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCcccchhhHHHHHHHHhhccccC-CHHHHHHHHHHHHHHHhcCH
Confidence            35789999999999999888776665521           11223444443      22 33334578888888888777


Q ss_pred             HHHHHHHHc------------CChHHHHHHHhc-----CChhHHHHHHHHHHHhccCCCHHHHHHHHHC-CChHHHHhhc
Q 011328          318 NQIQAIIEA------------GIIGPLVNLLLN-----AEFEIKKEAAWAISNATSGGSNEQIKFLVSQ-GCIKPLCDLL  379 (488)
Q Consensus       318 ~~~~~l~~~------------~~l~~L~~ll~~-----~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~-~~i~~L~~ll  379 (488)
                      +.+.....-            ..+..+..+|..     .++.++..-+..|...... ++.....+... ..+..|++..
T Consensus       130 ~~Ke~al~V~~~~~~~ge~~vtliq~v~~lL~~~l~~~~d~ri~igyL~LL~~WL~e-~p~AV~~FL~~~s~l~~Li~~~  208 (312)
T PF04869_consen  130 EAKEQALRVTEGDESSGEEPVTLIQTVSELLIASLRRNSDPRIQIGYLMLLIVWLFE-CPDAVNDFLSEGSNLQSLIEFS  208 (312)
T ss_dssp             HHHHHHTT--EE--STTS--EEHHHHHHHHTTT----T--HHHHHHHHHHHHHHHTT--HHHHHHHHCSTTHHHHHHHHH
T ss_pred             HHHHHHHcccCCCCCCCCCcccHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHhC-CHHHHHHHHcCcchHHHHHHHh
Confidence            766555421            135555555544     2666777777777777665 45666666554 5788888864


Q ss_pred             CC---CCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHH-HhhccHHHHHHh
Q 011328          380 NC---PDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAI-DDAEGLEKIENL  432 (488)
Q Consensus       380 ~~---~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l-~~~g~~~~L~~l  432 (488)
                      ..   .+.-++-.+.-.|+-......+....    ....+...+ .+.|.-..+.++
T Consensus       209 ~~~~~~~~~VqGL~A~LLGicyef~~~~s~~----~R~~l~~ll~~riG~d~y~~kl  261 (312)
T PF04869_consen  209 NQSSSEDVLVQGLCAFLLGICYEFSTKDSPI----PRATLHPLLTKRIGRDNYFSKL  261 (312)
T ss_dssp             S--TCCCHHHHHHHHHHHHHHHHT-S-SCCC-----HHHHHHHHHHHT-HHHHHHHH
T ss_pred             hcCCCCcchHHHHHHHHHHHHHHhcCCCCCc----CHHHHHHHHHHhcCHHHHHHHH
Confidence            42   33445555666666666655333211    112244445 456654444444

p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.

>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised

Probab=85.63  E-value=2.8  Score=36.60  Aligned_cols=85  Identities=20%  Similarity=0.238  Sum_probs=62.3

Q ss_pred             chHhHHHHHHhHhhcCCchhhHHHhh-------CCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHH-HHcCC
Q 011328          257 SVLIPALRTVGNIVTGDDMQTQCIIN-------HQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAI-IEAGI  328 (488)
Q Consensus       257 ~v~~~a~~~L~~l~~~~~~~~~~~~~-------~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l-~~~~~  328 (488)
                      .-+..|+.+|+.++... .+...++.       ..++..|.+++....+...|+.|+..|.+++.++......+ .+.+.
T Consensus       139 SPqrlaLEaLcKLsV~e-~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~  217 (257)
T PF12031_consen  139 SPQRLALEALCKLSVIE-NNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPC  217 (257)
T ss_pred             CHHHHHHHHHHHhheec-cCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhch
Confidence            46788999999998632 23232222       24567788888777688999999999999999766655444 35788


Q ss_pred             hHHHHHHHhcCChh
Q 011328          329 IGPLVNLLLNAEFE  342 (488)
Q Consensus       329 l~~L~~ll~~~~~~  342 (488)
                      +..|+.++.+.+..
T Consensus       218 i~~Li~FiE~a~~~  231 (257)
T PF12031_consen  218 ISHLIAFIEDAEQN  231 (257)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999886443

This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.

>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning

Probab=85.31  E-value=10  Score=28.25  Aligned_cols=93  Identities=13%  Similarity=0.165  Sum_probs=62.8

Q ss_pred             HHHHHHHHHHHHHhccCCCccHHHHH-HcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHH
Q 011328           45 NIQLDATTQFRKLLSIERSPPINEVI-QSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVR  123 (488)
Q Consensus        45 ~~~~~a~~~L~~l~~~~~~~~~~~~~-~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~  123 (488)
                      ++|.+|+..+..=+... --....+. ....+..|++.+..+. ...+..++..+..++. ++.....+.+-|....|.+
T Consensus         2 EIR~RAL~~I~~Kl~~~-Li~~~dl~~~~~Ll~~LleWFnf~~-~~~~~~VL~Ll~~L~~-~~~a~~~l~~iG~~~fL~k   78 (98)
T PF14726_consen    2 EIRVRALESIEFKLEHG-LISEEDLVKERLLLKQLLEWFNFPP-VPMKEEVLALLLRLLK-SPYAAQILRDIGAVRFLSK   78 (98)
T ss_pred             hHHHHHHHHHHHHHHhc-cccHHHHccHHHHHHHHHHHhCCCC-CccHHHHHHHHHHHHh-CcHHHHHHHHccHHHHHHH
Confidence            46666665544333322 22223333 5567888888888888 5688899999999998 7888888888898888777


Q ss_pred             hhCCCCHHHHHHHHHHH
Q 011328          124 LLSSPTDDVREQAVWAL  140 (488)
Q Consensus       124 ~L~~~~~~v~~~a~~~L  140 (488)
                      +-..-++..+...-.++
T Consensus        79 lr~~~~~~~~~~id~il   95 (98)
T PF14726_consen   79 LRPNVEPNLQAEIDEIL   95 (98)
T ss_pred             HHhcCCHHHHHHHHHHH
Confidence            66666666665544443

>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]

Probab=85.13  E-value=10  Score=35.63  Aligned_cols=72  Identities=8%  Similarity=0.067  Sum_probs=60.2

Q ss_pred             ChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcC-CCCHHHHHHHHHHHHHHHH
Q 011328          328 IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLN-CPDPRIVTVCLEGLENILK  399 (488)
Q Consensus       328 ~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~v~~~al~~L~~l~~  399 (488)
                      ++..+.+-+...++.|...|+..+..++.++....+..+...++...|..++. ..++.+++..-..+....+
T Consensus        46 ~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWse  118 (462)
T KOG2199|consen   46 CLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSE  118 (462)
T ss_pred             HHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHH
Confidence            56778888999999999999999999999998888899999999999999999 6677777666555555444

>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]

Probab=84.83  E-value=10  Score=41.23  Aligned_cols=236  Identities=19%  Similarity=0.210  Sum_probs=131.7

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHh--------hcCCCChhHHHHHHHHHHHh
Q 011328           30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEF--------LSRDDFPQLQFEAAWALTNI  101 (488)
Q Consensus        30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~l--------L~~~~~~~v~~~a~~~L~~l  101 (488)
                      +.+..|++.+.++...+|.-++.+++.++............+..++..+.-+        ..++--..+++.++++|+.+
T Consensus        77 s~~e~L~~~~~~~~we~rhg~~i~lrei~~~h~~~~~~~~led~~~rll~v~~Ldrf~dfisd~vvapVre~caq~L~~~  156 (1549)
T KOG0392|consen   77 SFLEELVNDLFEPQWEIRHGAAIALREILKTHGDSLSYELLEDLLIRLLCVLALDRFGDFISDNVVAPVREACAQALGAY  156 (1549)
T ss_pred             HHHHHHHHHhcCchhhhhcCcchhhhhHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHH
Confidence            4566788889999999999999999999876532222222222222222111        11111146899999999988


Q ss_pred             cCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHh---cCChHHHHHHhcccccHhHHHH
Q 011328          102 ASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLS---NGALMPLLAQFNEHAKLSMLRN  178 (488)
Q Consensus       102 ~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~---~~~l~~L~~ll~~~~~~~v~~~  178 (488)
                      .....+...    ...++.+.+++..+..+++...+..+.....    .+.....   ..++...+..+ .+++..++..
T Consensus       157 l~~~~~s~~----~~~~~il~q~~~q~~w~ir~Ggll~iky~~a----ir~d~l~~~~~~vl~~~i~~L-~ds~ddv~~~  227 (1549)
T KOG0392|consen  157 LKHMDESLI----KETLDILLQMLRQPNWEIRHGGLLGIKYNVA----IRQDLLFQLLNLVLDFVIEGL-EDSDDDVRSV  227 (1549)
T ss_pred             HHhhhhHhh----HHHHHHHHHHHcCcchhheechHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhh-hhcchHHHHH
Confidence            873222111    1236777788887777777666655544322    1111111   12344555666 6677788888


Q ss_pred             HHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCCh--hHHHHHHHHHHHhccCCc--hh-HHHHHHhCCHHHHHHhcCC
Q 011328          179 ATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDD--EVLTDACWALSYLSDGTN--DK-IQAVIEAGVCPRLVELLRH  253 (488)
Q Consensus       179 a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~--~v~~~al~~L~~l~~~~~--~~-~~~~~~~~~l~~L~~lL~~  253 (488)
                      |+..+.-............+..++..+...+..-+.  .-.......+..++....  +. .+.-.+.++++.+...+.+
T Consensus       228 aa~~l~~~~s~~v~l~~~~i~~lv~~l~~~l~~lddl~~s~~si~~ll~~l~~~~evl~l~~~~n~~~~Lvp~~~p~l~~  307 (1549)
T KOG0392|consen  228 AAQFLVPAPSIQVKLMVQKIAKLVHTLWSFLLELDDLSSSTASIMHLLDELCIENEVLDLFEQQNLEVGLVPRLWPFLRH  307 (1549)
T ss_pred             HHHHhhhhhHHHHhhhHhHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhhHHHHHHHHHhhhhhccchhhHHHHHH
Confidence            888877766554333333334444444444332221  011111112222222220  00 1111224788888888888


Q ss_pred             CCcchHhHHHHHHhHhhcCCc
Q 011328          254 PSPSVLIPALRTVGNIVTGDD  274 (488)
Q Consensus       254 ~~~~v~~~a~~~L~~l~~~~~  274 (488)
                      .-..++..++..+..+....+
T Consensus       308 ~i~sv~~a~l~~l~~lle~~~  328 (1549)
T KOG0392|consen  308 TISSVRRAALETLAMLLEADD  328 (1549)
T ss_pred             HHHHHHHHHHHHHHHHHhcCC
Confidence            877889999999888877543

>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein

Probab=84.68  E-value=19  Score=28.99  Aligned_cols=99  Identities=17%  Similarity=0.231  Sum_probs=66.3

Q ss_pred             CChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcC-CCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHH
Q 011328          339 AEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLN-CPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFA  417 (488)
Q Consensus       339 ~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~  417 (488)
                      +|+..-...+..+.. -..+..         .++..|..-+. +.++.++..++..|..+++.+...           |.
T Consensus        17 ~dw~~ileicD~In~-~~~~~k---------~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~-----------fh   75 (141)
T cd03565          17 EDWGLNMEICDIINE-TEDGPK---------DAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHR-----------FH   75 (141)
T ss_pred             cCHHHHHHHHHHHhC-CCCcHH---------HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHH-----------HH
Confidence            355655555655543 222211         24555556555 468888899999999998876543           56


Q ss_pred             HHHHhhccHHH-HHHhhcC---CCHHHHHHHHHHHHHhcCCCCCC
Q 011328          418 QAIDDAEGLEK-IENLQSH---DNTEIYEKAVKILETYWVEEDED  458 (488)
Q Consensus       418 ~~l~~~g~~~~-L~~l~~~---~~~~v~~~a~~~l~~~~~~~~~~  458 (488)
                      ..+...+.++. |.++...   .+.+|+.+...++......-.++
T Consensus        76 ~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~f~~~  120 (141)
T cd03565          76 VLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWADAFRGS  120 (141)
T ss_pred             HHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHHHhCCC
Confidence            66777777876 7887653   35689999999998887666553

The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.

>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3

Probab=84.67  E-value=18  Score=36.45  Aligned_cols=172  Identities=13%  Similarity=0.021  Sum_probs=102.7

Q ss_pred             ccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhc--c---------CChhHHHHHHHHHHHhccCCchhHHHHH
Q 011328          171 AKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH--S---------NDDEVLTDACWALSYLSDGTNDKIQAVI  239 (488)
Q Consensus       171 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~--~---------~~~~v~~~al~~L~~l~~~~~~~~~~~~  239 (488)
                      ++.++...|-..|..+...      .....++..|..+..  .         .++.++...+..|..-....      -.
T Consensus       249 ~~~~V~~~ae~~LKr~~~~------~ed~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~~Aa------~~  316 (501)
T PF13001_consen  249 SNSSVSDRAEDLLKRLSVS------LEDPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSVIAA------TS  316 (501)
T ss_pred             CcchHHHHHHHHHhhcCCC------CCCHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhHHHH------hC
Confidence            4456666677777666554      233456666666655  2         35677777776666421100      01


Q ss_pred             HhCCHHHHHHhcCCC--CcchHhHHHHHH---hHhhcCCchhhHHHhhCCChHHHHHHhc-------ccchhhHHHHHHH
Q 011328          240 EAGVCPRLVELLRHP--SPSVLIPALRTV---GNIVTGDDMQTQCIINHQALPCLLDLLT-------QNYKKSIKKEACW  307 (488)
Q Consensus       240 ~~~~l~~L~~lL~~~--~~~v~~~a~~~L---~~l~~~~~~~~~~~~~~~~~~~L~~lL~-------~~~~~~v~~~a~~  307 (488)
                      ....+..+...+.+.  +..++..++..+   .....+.....-..+...+...+.+.++       ...+...|..+..
T Consensus       317 ~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe  396 (501)
T PF13001_consen  317 FPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYE  396 (501)
T ss_pred             CccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHHH
Confidence            113444455556555  567777777777   5555444333222222223333333332       1226788999999


Q ss_pred             HHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhcc
Q 011328          308 TISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS  356 (488)
Q Consensus       308 ~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~  356 (488)
                      +|+.++...+.....  +.+++..|++-|..++++++...-.||..++.
T Consensus       397 ~lG~L~~~~p~l~~~--d~~li~~LF~sL~~~~~evr~sIqeALssl~~  443 (501)
T PF13001_consen  397 TLGLLAKRAPSLFSK--DLSLIEFLFDSLEDESPEVRVSIQEALSSLAP  443 (501)
T ss_pred             HHHHHHccCcccccc--cHHHHHHHHHHhhCcchHHHHHHHHHHHHHHH
Confidence            999999876654311  23478888888888889999888888888874

4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].

>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal

Probab=84.23  E-value=32  Score=31.14  Aligned_cols=165  Identities=19%  Similarity=0.173  Sum_probs=93.1

Q ss_pred             HHHHHHHHHHHhhhhCCC-------chhHHHHHhcCChHHHHHHhcccc---cHhHHHHHHHHHHHhhcCCCCCChhhhh
Q 011328          130 DDVREQAVWALGNVAGDS-------PKCRDLVLSNGALMPLLAQFNEHA---KLSMLRNATWTLSNFCRGKPQPLFEQTR  199 (488)
Q Consensus       130 ~~v~~~a~~~L~~l~~~~-------~~~~~~~~~~~~l~~L~~ll~~~~---~~~v~~~a~~~L~~l~~~~~~~~~~~~~  199 (488)
                      +...+.++..|..++...       .+.|-.+.-...++.++..+.+..   .......++..|..+|......      
T Consensus        76 s~t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~~~~------  149 (262)
T PF14225_consen   76 SSTYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQGLP------  149 (262)
T ss_pred             CCcHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhCCCc------
Confidence            445556677777776432       111222222234566666663322   0234456778888888543211      


Q ss_pred             chHHHHHHhhc----cCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCch
Q 011328          200 PALPALERLIH----SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDM  275 (488)
Q Consensus       200 ~~~~~l~~ll~----~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~  275 (488)
                       -+..++....    .+..+....++..|+.-..  ++.     +...+..++.+|.++-+.++..++.+|..+....+.
T Consensus       150 -~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~--P~~-----~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~  221 (262)
T PF14225_consen  150 -NLARILSSYAKGRFRDKDDFLSQVVSYLREAFF--PDH-----EFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDM  221 (262)
T ss_pred             -cHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhC--chh-----HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccC
Confidence             1222222222    1233444445544443211  111     225567788999988889999999999999876554


Q ss_pred             hhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhc
Q 011328          276 QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA  314 (488)
Q Consensus       276 ~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~  314 (488)
                      ...  ...+++..+.++++++    ...+|+.++-+...
T Consensus       222 ~~~--~~~dlispllrlL~t~----~~~eAL~VLd~~v~  254 (262)
T PF14225_consen  222 RSP--HGADLISPLLRLLQTD----LWMEALEVLDEIVT  254 (262)
T ss_pred             CCC--cchHHHHHHHHHhCCc----cHHHHHHHHHHHHh
Confidence            322  5557889999999877    34567766666554

>KOG1788 consensus Uncharacterized conserved protein [Function unknown]

Probab=83.53  E-value=72  Score=34.66  Aligned_cols=403  Identities=15%  Similarity=0.125  Sum_probs=206.3

Q ss_pred             hcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcC--CCchhhHHHHhCC
Q 011328           39 VWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIAS--GTSENTRVVIDHG  116 (488)
Q Consensus        39 L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~--~~~~~~~~~~~~g  116 (488)
                      |++++.+.+...+..+.++-+.. .++....-+.-.+|.++.-+..-. ..+|...+.++.--..  ..-..++      
T Consensus       476 LkaenkdlqaeVlnrmfkIftsh-peNYricqelytvpllvlnmegfP-sslqvkiLkilEyAVtvvncvPeqE------  547 (2799)
T KOG1788|consen  476 LKAENKDLQAEVLNRMFKIFTSH-PENYRICQELYTVPLLVLNMEGFP-SSLQVKILKILEYAVTVVNCVPEQE------  547 (2799)
T ss_pred             HHhcCcchhhHHHHHHHHHhccC-hHHhhHHhhccccchhhhhhcCCC-hHHHHHHHHHHHHHHhhhccCcHHH------
Confidence            35778888888888888887665 555555556677888887777655 4666665554432211  0111111      


Q ss_pred             CHHHHHHhhCCC-CHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccc---cHhHHHHHHHHHHHhhcCCCC
Q 011328          117 AVPIFVRLLSSP-TDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHA---KLSMLRNATWTLSNFCRGKPQ  192 (488)
Q Consensus       117 ~i~~L~~~L~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~---~~~v~~~a~~~L~~l~~~~~~  192 (488)
                       +-.|+-+|+.+ +..+....+.....+...+...++.+.+-|.++.|-..++++.   .++ +..   .........+.
T Consensus       548 -LlSLCvLLqqpIssalkhtIlsffvKLIsfDqqyKkvlREVGvLevLqddlkqhkll~gpd-qys---gvsehydrnps  622 (2799)
T KOG1788|consen  548 -LLSLCVLLQQPISSALKHTILSFFVKLISFDQQYKKVLREVGVLEVLQDDLKQHKLLRGPD-QYS---GVSEHYDRNPS  622 (2799)
T ss_pred             -HHHHHHHhcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHhhhccCcc-hhh---hHHHHhhcCCC
Confidence             23445566653 4555666666666666666777888888888888877774321   000 000   01111111110


Q ss_pred             C-Ch---hhhhchHHHHHHhhccCC--hhH------HHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHh
Q 011328          193 P-LF---EQTRPALPALERLIHSND--DEV------LTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLI  260 (488)
Q Consensus       193 ~-~~---~~~~~~~~~l~~ll~~~~--~~v------~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~  260 (488)
                      . .+   .-....+-.--++++++.  ..+      ....-.+|..+..++.++...+.+..++..++.++-  +++.|.
T Consensus       623 s~sf~~~ld~~daiisspklmeSgsgklplfevlltitvgwDcLisllKnnteNqklFreanGvklilpfli--ndehRS  700 (2799)
T KOG1788|consen  623 SPSFKQHLDSQDAIISSPKLMESGSGKLPLFEVLLTITVGWDCLISLLKNNTENQKLFREANGVKLILPFLI--NDEHRS  700 (2799)
T ss_pred             CchhhhccccccceeecchhhcccCCccchhhhhhhhhchHHHHHHHHhccchhhHHHHhhcCceEEEEeee--chHHHH
Confidence            0 00   000011100112222211  111      111234566666666666677777788888888874  455788


Q ss_pred             HHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccc-----------hhhHHHHHHHHHHHHhcCCHHHHHHHHHcCCh
Q 011328          261 PALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNY-----------KKSIKKEACWTISNITAGNVNQIQAIIEAGII  329 (488)
Q Consensus       261 ~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~-----------~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l  329 (488)
                      ..++++..+....+.+..    ..-+..+++.|+++.           ....+...+.+++.+..-+...+..+-+.+.+
T Consensus       701 slLrivscLitvdpkqvh----hqelmalVdtLksgmvt~IsgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGF  776 (2799)
T KOG1788|consen  701 SLLRIVSCLITVDPKQVH----HQELMALVDTLKSGMVTRISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGF  776 (2799)
T ss_pred             HHHHHHHHHhccCccccc----HHHHHHHHHHHHhcceeccchhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccH
Confidence            888888888776554322    123445666665521           23345566677777765445555566677777


Q ss_pred             HHHHHHHhcC----------ChhHHHHHHHHHH---HhccCCCHHHH-------------HHHHHCCC---------hHH
Q 011328          330 GPLVNLLLNA----------EFEIKKEAAWAIS---NATSGGSNEQI-------------KFLVSQGC---------IKP  374 (488)
Q Consensus       330 ~~L~~ll~~~----------~~~v~~~a~~aL~---~l~~~~~~~~~-------------~~l~~~~~---------i~~  374 (488)
                      ..|...|..-          |.-+-.+-...|-   .++...++.++             ..+.+.|+         +..
T Consensus       777 slLlttLhtfqgftelhdesDlcvyiklfkilFrlfTlavcenasNrmklhtvITsqtftsLLresgllcvnler~viql  856 (2799)
T KOG1788|consen  777 SLLLTTLHTFQGFTELHDESDLCVYIKLFKILFRLFTLAVCENASNRMKLHTVITSQTFTSLLRESGLLCVNLERHVIQL  856 (2799)
T ss_pred             HHHHHHHHHhccchhcCCchhhhhHHHHHHHHHHHHHHHHhhcchhhhheeeeeeHHHHHHHHHHhccceecchHHHHHH
Confidence            7777766421          1111111111211   11111112222             22223331         111


Q ss_pred             HHhh-cCCCCHHHHHHHHHHHHHHHHhhhhhh-ccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 011328          375 LCDL-LNCPDPRIVTVCLEGLENILKAGEAEK-NMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYW  452 (488)
Q Consensus       375 L~~l-l~~~~~~v~~~al~~L~~l~~~~~~~~-~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~~~~~v~~~a~~~l~~~~  452 (488)
                      |.++ ++.-.+.....-..+...+++.++... ..-..+..|+..+.+=.+|..+.|.+..-...++++..-.++++...
T Consensus       857 llElalevlvppfLtSEsaAcaeVfelednifavntPsGqfnpdk~~iynagavRvlirslLlnypK~qlefl~lleSla  936 (2799)
T KOG1788|consen  857 LLELALEVLVPPFLTSESAACAEVFELEDNIFAVNTPSGQFNPDKQKIYNAGAVRVLIRSLLLNYPKLQLEFLNLLESLA  936 (2799)
T ss_pred             HHHHHHHhhCCchhhhhHHHHHHHhhcccceeeeccCCCCcCchHhhhcccchhHHHHHHHHhhChHHHHHHHHHHHHHh
Confidence            1110 000000001111122333333332211 11123455666777777899999988877777898888888888887


Q ss_pred             CCCCCCCC
Q 011328          453 VEEDEDEP  460 (488)
Q Consensus       453 ~~~~~~~~  460 (488)
                      +....-.|
T Consensus       937 Raspfnae  944 (2799)
T KOG1788|consen  937 RASPFNAE  944 (2799)
T ss_pred             hcCCCchh
Confidence            76655444

>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []

Probab=83.47  E-value=29  Score=36.92  Aligned_cols=143  Identities=10%  Similarity=0.134  Sum_probs=84.7

Q ss_pred             HHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHH
Q 011328          245 PRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAII  324 (488)
Q Consensus       245 ~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~  324 (488)
                      ..+...+.++++......+.++.+++.-..-..+.  ...-.+.-..-.... -..+......+|..++.-+++....++
T Consensus       444 ~~l~~~~~~~~~~la~~lL~~~~~l~~l~~~~~~~--~~~~~~~~~~~~N~~-~~~~~~~~~~il~rls~~~~~~L~~l~  520 (727)
T PF12726_consen  444 KALLKSLDSDNPDLAKALLKSLSPLIGLEKFPPKK--EKDELDPAKTQFNKS-LGQITDLISQILERLSDFDPSHLKELL  520 (727)
T ss_pred             HHHHHhhcCCChHHHHHHHHHHHHhccccccCCcc--cccCcchHHHHHHHH-HHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence            33444444455555555566665555421111110  111222222233333 345667788889999887788887777


Q ss_pred             H-cCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhh
Q 011328          325 E-AGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAG  401 (488)
Q Consensus       325 ~-~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~  401 (488)
                      . .+....++.++-+++.++.+.|...|.......+           -.+.+..+++..-.........++.++.+..
T Consensus       521 ~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d~~~-----------R~e~i~~ll~~~~~~tL~ai~~~l~~~~~~~  587 (727)
T PF12726_consen  521 SDPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFDVDG-----------RLEAIQALLQSNFSPTLSAINWSLRQLTKLK  587 (727)
T ss_pred             cCcchhhHHHhheeCCChHHHHHHHHHHHHHhcCCc-----------HHHHHHHHHHHhHHHHHHHHHHHHHHHHhhh
Confidence            4 6789999999999999999999999999875432           2344445555444444455555666655443

The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.

>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised

Probab=83.28  E-value=4.5  Score=35.40  Aligned_cols=79  Identities=24%  Similarity=0.263  Sum_probs=58.9

Q ss_pred             hHHHHHHHHHHHhcCCCchhhHHHHhCCCH-------HHHHHhhCC-CCHHHHHHHHHHHhhhhCCCchh-HHHHHhcCC
Q 011328           89 QLQFEAAWALTNIASGTSENTRVVIDHGAV-------PIFVRLLSS-PTDDVREQAVWALGNVAGDSPKC-RDLVLSNGA  159 (488)
Q Consensus        89 ~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i-------~~L~~~L~~-~~~~v~~~a~~~L~~l~~~~~~~-~~~~~~~~~  159 (488)
                      .=|..|+.+|++++- .+.+.+.+...+-.       ..|.+++.. +++-.|+.|+..|.+++..+... +....+.+.
T Consensus       139 SPqrlaLEaLcKLsV-~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~  217 (257)
T PF12031_consen  139 SPQRLALEALCKLSV-IENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPC  217 (257)
T ss_pred             CHHHHHHHHHHHhhe-eccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhch
Confidence            358889999999997 55666666555433       444455543 78999999999999999877554 455567788


Q ss_pred             hHHHHHHhc
Q 011328          160 LMPLLAQFN  168 (488)
Q Consensus       160 l~~L~~ll~  168 (488)
                      +..|+.++.
T Consensus       218 i~~Li~FiE  226 (257)
T PF12031_consen  218 ISHLIAFIE  226 (257)
T ss_pred             HHHHHHHHH
Confidence            999999993

This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.

>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter

Probab=83.21  E-value=27  Score=29.48  Aligned_cols=74  Identities=9%  Similarity=0.074  Sum_probs=54.9

Q ss_pred             CCHHHHHHhcCCCCcchHhHHHHHHhHhhcC-CchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCH
Q 011328          242 GVCPRLVELLRHPSPSVLIPALRTVGNIVTG-DDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNV  317 (488)
Q Consensus       242 ~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~  317 (488)
                      -.++.+++-|...+...+..|...+..+... ..+..-.++. .++..+...|.+. ++++...++.+|..++..++
T Consensus        38 ~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlP-qLI~plk~AL~tr-~~~V~~~~L~~Lq~Lv~~~~  112 (183)
T PF10274_consen   38 HYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLP-QLIIPLKRALNTR-DPEVFCATLKALQQLVTSSD  112 (183)
T ss_pred             hHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHH-HHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHhhh
Confidence            4677788888887777777777777777665 3433333333 6778888888999 99999999999999965433

The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.

>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM

Probab=82.70  E-value=1.6  Score=35.18  Aligned_cols=74  Identities=16%  Similarity=0.114  Sum_probs=57.7

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChh---HHHHHHHHHHHhcC
Q 011328           30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQ---LQFEAAWALTNIAS  103 (488)
Q Consensus        30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~---v~~~a~~~L~~l~~  103 (488)
                      ..+..|.+.|++.++.++..|+..|-.+..+-+......+....++..|.+++.+.....   |+..++..+...+.
T Consensus        42 ea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~  118 (140)
T PF00790_consen   42 EAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAE  118 (140)
T ss_dssp             HHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHH
Confidence            567788899999999999999999999887654445566667778999999887654344   88888887776654

Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....

>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM

Probab=82.48  E-value=4.4  Score=32.64  Aligned_cols=76  Identities=17%  Similarity=0.284  Sum_probs=57.8

Q ss_pred             ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhc-CCCHH---HHHHHHH
Q 011328          371 CIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQS-HDNTE---IYEKAVK  446 (488)
Q Consensus       371 ~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~-~~~~~---v~~~a~~  446 (488)
                      ++..|..-|.++++.++..|+..|..+++.+...           |...+.....++.|..+.. +....   |++++..
T Consensus        43 a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~-----------f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~  111 (140)
T PF00790_consen   43 AARALRKRLKHGNPNVQLLALTLLDALVKNCGPR-----------FHREVASKEFLDELVKLIKSKKTDPETPVKEKILE  111 (140)
T ss_dssp             HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHH-----------HHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHH
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHH-----------HHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHH
Confidence            4677778888899999999999999999876432           6677777778888888753 44444   8999999


Q ss_pred             HHHHhcCCCCC
Q 011328          447 ILETYWVEEDE  457 (488)
Q Consensus       447 ~l~~~~~~~~~  457 (488)
                      ++...-.....
T Consensus       112 ll~~W~~~f~~  122 (140)
T PF00790_consen  112 LLQEWAEAFKS  122 (140)
T ss_dssp             HHHHHHHHTTT
T ss_pred             HHHHHHHHHCC
Confidence            88766555533

Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....

>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=82.32  E-value=73  Score=39.39  Aligned_cols=318  Identities=13%  Similarity=0.077  Sum_probs=150.0

Q ss_pred             CCHHHHHHhhcCCCChhHHHHHHHHHHHhcCC------Cc--hhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhh
Q 011328           73 GVVPRFIEFLSRDDFPQLQFEAAWALTNIASG------TS--ENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVA  144 (488)
Q Consensus        73 ~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~------~~--~~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~  144 (488)
                      -.++.|+..+...+ ..+...+..++..+...      ++  ..+..+ -.++++.+.++..++...-+...+..|..+.
T Consensus       984 i~ldal~~~l~~~~-~~~~~~g~~~l~~i~~~~~~~l~~~~~~~~lpi-~~~l~~k~~~lCy~~~wy~k~gG~~gI~~l~ 1061 (3550)
T KOG0889|consen  984 TFLDALVESLSHEN-SEMRPAGVRALKVIFSTSTLILGSPERAFKLPM-FEYLLEKLCHLCYDSTWYAKDGGVNGIKCLI 1061 (3550)
T ss_pred             HHHHHHHHHHhccc-hhhhhhHHHHHHHHHHHHHHhhcCcchhhccch-HHHHHHHHHHHhccHhHHHHcCCCceeeeeh
Confidence            35677777777776 67776666666555320      11  111111 1234555555555555555555555555555


Q ss_pred             CCCchhHHHHH--hcCChHHHHHHhcccc------cHhHHHHHHHHHHHhhcCC---CCCChhhhhchHHHHHHhhccCC
Q 011328          145 GDSPKCRDLVL--SNGALMPLLAQFNEHA------KLSMLRNATWTLSNFCRGK---PQPLFEQTRPALPALERLIHSND  213 (488)
Q Consensus       145 ~~~~~~~~~~~--~~~~l~~L~~ll~~~~------~~~v~~~a~~~L~~l~~~~---~~~~~~~~~~~~~~l~~ll~~~~  213 (488)
                      .+.+.  ..+.  ....+..++..+.+..      ........+.-+...+...   +........+++..++.-+.+++
T Consensus      1062 ~~~~~--~~l~d~~~d~~~~l~fvl~d~~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~lv~eL~npN 1139 (3550)
T KOG0889|consen 1062 ESMPS--LWLLDFQVDILKALFFVLKDTESEVSSLPLDEAKDILMDILRVIFIDELAEEERAKSAMNVFSPLVLELFNPN 1139 (3550)
T ss_pred             hhchH--HHHHHHHHHHhhhHHHhhcCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHcCCc
Confidence            54441  1111  1223444554442211      1112222222222222112   23333445678888888888999


Q ss_pred             hhHHHHHHHHHHHhccCCchhHHHHHHh--CC--HHHHHHhcCCCCcchHhHHHHHHhHhhcCCchh-------hHHHh-
Q 011328          214 DEVLTDACWALSYLSDGTNDKIQAVIEA--GV--CPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQ-------TQCII-  281 (488)
Q Consensus       214 ~~v~~~al~~L~~l~~~~~~~~~~~~~~--~~--l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~-------~~~~~-  281 (488)
                      ..|++.+..+|.+++.........+.+.  +.  ++.+..-+....-..+...+.++..++.-.+..       ..... 
T Consensus      1140 ~~VR~~~~~~L~~i~~~s~~~v~~L~~p~K~~ll~p~f~k~lr~~p~~~qig~vd~~~fC~~l~p~~f~~~~~l~~l~~~ 1219 (3550)
T KOG0889|consen 1140 SDVREFSQKLLRLISELSGKSVVKLLEPFKDVLLSPIFKKPLRALPFTIQIGHLDAITFCLSLGPCLFDFTEELYRLKRF 1219 (3550)
T ss_pred             hHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhccccccccccCCHHHHhhhHHHHHHHHHcCCcccCchHHHHHHHHH
Confidence            9999999999999986553222212211  11  111111112222223333333333333222211       10000 


Q ss_pred             --------hCCChHHHHHHhcccc---hhhHHHHHHHHHHHHhcCCHHHH--HHHHHcCChHHHHHHHhcCChhHHHHHH
Q 011328          282 --------NHQALPCLLDLLTQNY---KKSIKKEACWTISNITAGNVNQI--QAIIEAGIIGPLVNLLLNAEFEIKKEAA  348 (488)
Q Consensus       282 --------~~~~~~~L~~lL~~~~---~~~v~~~a~~~L~nl~~~~~~~~--~~l~~~~~l~~L~~ll~~~~~~v~~~a~  348 (488)
                              +..... +.+....+.   ....|..+..+++......+-..  ..-...+++..++..+....+++...+.
T Consensus      1220 ~~~La~~~~~~~~~-i~k~~~~k~~~~l~~Lr~~ci~ll~~~~~~~d~~~~~~~~~r~kii~v~fk~l~~~~~Ei~~~~~ 1298 (3550)
T KOG0889|consen 1220 LIALADAEEDELAT-IQKTSDYKNSSSLVRLRVACIKLLAACMKLSDFRTPQHAELREKIIAVFFKSLYKRSSELIEVAL 1298 (3550)
T ss_pred             HHHhhhhhhhhhhh-hhcccccccccccccchhHHHHHHHHHHhcccccchhhhhhhhHHHHHHHHHHcCChHHHHHHHH
Confidence                    001111 222221110   12235566666665554222111  1112345788888888888999999999


Q ss_pred             HHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHH
Q 011328          349 WAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENIL  398 (488)
Q Consensus       349 ~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~  398 (488)
                      .++.+.... +...-..+++.+.-+.|.++-+..+  .....+..++.+.
T Consensus      1299 ~~l~~v~~~-~~~~~ke~lq~~lrplL~~l~d~~~--lsv~~l~~ls~l~ 1345 (3550)
T KOG0889|consen 1299 EGLRKVLAQ-DVKLPKELLQSHLRPLLMNLSDHNN--LSVPGLEGLSRLL 1345 (3550)
T ss_pred             HHHHhhhhc-cccccHHHHHhhHHHHHHhhhHhhh--hhHHHHHHHHHHH
Confidence            999888654 2333444555455566666555443  2334444444443

>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]

Probab=82.27  E-value=48  Score=31.70  Aligned_cols=154  Identities=16%  Similarity=0.056  Sum_probs=91.9

Q ss_pred             HHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhc----------cCChhHHHHHHHHHHHhccCC
Q 011328          162 PLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH----------SNDDEVLTDACWALSYLSDGT  231 (488)
Q Consensus       162 ~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~----------~~~~~v~~~al~~L~~l~~~~  231 (488)
                      .++..+.+..-...+...+.++.-|+++............++.++.+-+          ..+..+...++.||+|+..++
T Consensus        49 ~i~~Vle~~~p~t~~v~~LetvrILSRdk~~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNlvf~S  128 (532)
T KOG4464|consen   49 RIFEVLENGEPLTHRVVCLETVRILSRDKDGLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNLVFHS  128 (532)
T ss_pred             HHHHHHhcCCCchhhhhHHHHHHHHhccccccccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHHHhcc
Confidence            4555553443345556677777777776644444444455555555532          234688999999999999888


Q ss_pred             chhHHHHHHhCCHHHHHHhcCC----CC-cchHhHHHHHHhHhhcCCch-hhHHHhhCCChHHHHHHhccc---------
Q 011328          232 NDKIQAVIEAGVCPRLVELLRH----PS-PSVLIPALRTVGNIVTGDDM-QTQCIINHQALPCLLDLLTQN---------  296 (488)
Q Consensus       232 ~~~~~~~~~~~~l~~L~~lL~~----~~-~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~~~~~L~~lL~~~---------  296 (488)
                      +...+...+......+.+.+..    +. ..+...-++.|.-+..-... ..+.+.+.++++.+.+++.++         
T Consensus       129 q~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~led~lgidse~n~  208 (532)
T KOG4464|consen  129 QRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTNWLEDKLGIDSEINV  208 (532)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhhccccCCCCcCC
Confidence            8777777777666666665532    11 12222333333333332223 334445778888888888542         


Q ss_pred             -----chhhHHHHHHHHHHHHhcC
Q 011328          297 -----YKKSIKKEACWTISNITAG  315 (488)
Q Consensus       297 -----~~~~v~~~a~~~L~nl~~~  315 (488)
                           ++...-.+++.++.|+..+
T Consensus       209 ~~l~pqe~n~a~EaLK~~FNvt~~  232 (532)
T KOG4464|consen  209 PPLNPQETNRACEALKVFFNVTCD  232 (532)
T ss_pred             CCCCHHHHHHHHHHHHHHhheeec
Confidence                 1223456778888888763

>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p []

Probab=81.86  E-value=14  Score=33.85  Aligned_cols=74  Identities=22%  Similarity=0.228  Sum_probs=55.9

Q ss_pred             ChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcC------------CCCHHHHHHHHHHHH
Q 011328          328 IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLN------------CPDPRIVTVCLEGLE  395 (488)
Q Consensus       328 ~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~------------~~~~~v~~~al~~L~  395 (488)
                      ++|.++.++.+.++.+|..++.+|..+........-..+.+.|..+.+.+.+.            .+...+...+..++.
T Consensus       120 iiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L~  199 (282)
T PF10521_consen  120 IIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPALL  199 (282)
T ss_pred             HHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHH
Confidence            79999999999999999999999999998664443334667777666666443            234567788888888


Q ss_pred             HHHHhh
Q 011328          396 NILKAG  401 (488)
Q Consensus       396 ~l~~~~  401 (488)
                      .++...
T Consensus       200 ~L~~~~  205 (282)
T PF10521_consen  200 SLLKTQ  205 (282)
T ss_pred             HHHHhh
Confidence            887653

>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter

Probab=80.46  E-value=34  Score=28.86  Aligned_cols=71  Identities=18%  Similarity=0.198  Sum_probs=53.5

Q ss_pred             CChHHHHHHhcccchhhHHHHHHHHHHHHhcC-CHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhcc
Q 011328          284 QALPCLLDLLTQNYKKSIKKEACWTISNITAG-NVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS  356 (488)
Q Consensus       284 ~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~  356 (488)
                      ..++.+.+-|... +...+--|...+..+... ..+.+-.++. .++..+-+.|.+.++++...++.+|..++.
T Consensus        38 ~~Lpif~dGL~Et-~~Py~flA~~g~~dll~~~~~~kilPvlP-qLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~  109 (183)
T PF10274_consen   38 HYLPIFFDGLRET-EHPYRFLARQGIKDLLERGGGEKILPVLP-QLIIPLKRALNTRDPEVFCATLKALQQLVT  109 (183)
T ss_pred             hHHHHHHhhhhcc-CccHHHHHHHHHHHHHHhcchhHHHHHHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence            4567777777766 555677777777777664 4554444444 488888999999999999999999999944

The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	488
4b8j_A	528	Rimp_alpha1a Length = 528		0.0
2yns_A	490	Rimp_alpha_b54nls Length = 490		0.0
3tj3_A	447	Structure Of Importin A5 Bound To The N-Terminus Of		1e-127
2jdq_A	450	C-Terminal Domain Of Influenza A Virus Polymerase P		1e-127
1wa5_B	530	Crystal Structure Of The Exportin Cse1p Complexed W		1e-125
1bk5_A	422	Karyopherin Alpha From Saccharomyces Cerevisiae Len		1e-124
1bk6_A	422	Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls Leng		1e-123
1ee5_A	424	Yeast Karyopherin (Importin) Alpha In A Complex Wit		1e-123
1ee4_A	423	Crystal Structure Of Yeast Karyopherin (Importin) A		1e-123
1un0_A	443	Crystal Structure Of Yeast Karyopherin (Importin) A		1e-123
2c1t_A	454	Structure Of The Kap60p:nup2 Complex Length = 454		1e-123
3rz9_A	510	Mouse Importin Alpha-Ku80 Nls Peptide Complex Lengt		1e-108
1q1s_C	466	Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptid		1e-108
3ukw_B	510	Mouse Importin Alpha: Bimax1 Peptide Complex Length		1e-108
4ba3_A	496	Mimp_alphadibb_a89nls Length = 496		1e-108
1ejl_I	460	Mouse Importin Alpha-Sv40 Large T Antigen Nls Pepti		1e-108
4htv_A	509	Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex		1e-107
3tpo_A	529	Crystal Structure Of D192aE396A MUTANT OF MOUSE IMP		1e-106
3fex_C	467	Crystal Structure Of The Cbc-Importin Alpha Complex		1e-106
3l3q_A	427	Mouse Importin Alpha-Peptm Nls Peptide Complex Leng		1e-106
3ve6_A	426	Crystal Structure Analysis Of Venezuelan Equine Enc		1e-106
1y2a_C	428	Structure Of Mammalian Importin Bound To The Non-Cl		1e-106
3btr_C	427	Ar-Nls:importin-Alpha Complex Length = 427		1e-106
2ynr_A	461	Mimp_alphadibb_b54nls Length = 461		1e-106
2c1m_A	424	Nup50:importin-Alpha Complex Length = 424		1e-106
3tpm_A	422	Crystal Structure Of Mal Rpel Domain In Complex Wit		1e-106
1ial_A	453	Importin Alpha, Mouse Length = 453		1e-106
4db8_A	252	Designed Armadillo-Repeat Protein Length = 252		1e-35
4db8_A	252	Designed Armadillo-Repeat Protein Length = 252		1e-33
4db6_A	210	Designed Armadillo Repeat Protein (Yiiim3aii) Lengt		8e-26
4dba_A	210	Designed Armadillo Repeat Protein (Yiim3aii) Length		1e-25
4dba_A	210	Designed Armadillo Repeat Protein (Yiim3aii) Length		7e-23
4dba_A	210	Designed Armadillo Repeat Protein (Yiim3aii) Length		4e-22
4db9_A	210	Designed Armadillo Repeat Protein (Yiiim3aiii) Leng		1e-22
4db9_A	210	Designed Armadillo Repeat Protein (Yiiim3aiii) Leng		7e-22
4hxt_A	252	Crystal Structure Of Engineered Protein. Northeast		8e-20

>pdb|4B8J|A Chain A, Rimp_alpha1a Length = 528

Iteration: 1
 Score =  739 bits (1908), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/455 (79%), Positives = 392/455 (86%), Gaps = 3/455 (0%)
Query: 25  IQLQLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSR 84
           +  +LESLPAM+ GV+SDD N+QL+ATTQFRKLLSIERSPPI EVIQSGVVPRF++FL+R
Sbjct: 69  VDKKLESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTR 128
Query: 85  DDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVA 144
           +DFPQLQFEAAWALTNIASGTSENT+VVIDHGAVPIFV+LL S +DDVREQAVWALGNVA
Sbjct: 129 EDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVA 188
Query: 145 GDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPA 204
           GDSPKCRDLVL+NGAL+PLLAQ NEH KLSMLRNATWTLSNFCRGKPQP FEQTRPALPA
Sbjct: 189 GDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPA 248
Query: 205 LERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALR 264
           L RLIHSND+EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL HPSPSVLIPALR
Sbjct: 249 LARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALR 308
Query: 265 TVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXX 324
           TVGNIVTGDD QTQCII+HQALPCLL LLTQN KKSIKKEACWTISNITAGN +      
Sbjct: 309 TVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVI 368
Query: 325 XXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDP 384
                 PLVNLL  AEF+IKKEAAWAISNATSGGS++QIK+LVS+GCIKPLCDLL CPD 
Sbjct: 369 NAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDI 428
Query: 385 RIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKA 444
           RIVTVCLEGLENILK GE +K +   G VN+F+Q ID+AEGLEKIENLQSHDN EIYEKA
Sbjct: 429 RIVTVCLEGLENILKVGETDKTLA-AGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKA 487
Query: 445 VKILETYWVXXXXXXXXXXXXATQAG--FGFAGNG 477
           VKILE YW+            A   G  F F   G
Sbjct: 488 VKILEAYWMDEEDDTMGATTVAAPQGATFDFGQGG 522

>pdb|2YNS|A Chain A, Rimp_alpha_b54nls Length = 490

Iteration: 1
 Score =  733 bits (1893), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/449 (80%), Positives = 388/449 (86%), Gaps = 3/449 (0%)
Query: 31  SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQL 90
           SLPAM+ GV+SDD N+QL+ATTQFRKLLSIERSPPI EVIQSGVVPRF++FL+R+DFPQL
Sbjct: 37  SLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQL 96
Query: 91  QFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 150
           QFEAAWALTNIASGTSENT+VVIDHGAVPIFV+LL S +DDVREQAVWALGNVAGDSPKC
Sbjct: 97  QFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKC 156
Query: 151 RDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH 210
           RDLVL+NGAL+PLLAQ NEH KLSMLRNATWTLSNFCRGKPQP FEQTRPALPAL RLIH
Sbjct: 157 RDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIH 216
Query: 211 SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIV 270
           SND+EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL HPSPSVLIPALRTVGNIV
Sbjct: 217 SNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIV 276
Query: 271 TGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXXXXXXX 330
           TGDD QTQCII+HQALPCLL LLTQN KKSIKKEACWTISNITAGN +            
Sbjct: 277 TGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIG 336
Query: 331 PLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVC 390
           PLVNLL  AEF+IKKEAAWAISNATSGGS++QIK+LVS+GCIKPLCDLL CPD RIVTVC
Sbjct: 337 PLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVC 396
Query: 391 LEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILET 450
           LEGLENILK GE +K +   G VN+F+Q ID+AEGLEKIENLQSHDN EIYEKAVKILE 
Sbjct: 397 LEGLENILKVGETDKTLA-AGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEA 455
Query: 451 YWVXXXXXXXXXXXXATQAG--FGFAGNG 477
           YW+            A   G  F F   G
Sbjct: 456 YWMDEEDDTMGATTVAAPQGATFDFGQGG 484

>pdb|3TJ3|A Chain A, Structure Of Importin A5 Bound To The N-Terminus Of Nup50 Length = 447

Iteration: 1
 Score =  451 bits (1159), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 247/420 (58%), Positives = 294/420 (70%), Gaps = 4/420 (0%)
Query: 35  MVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQS-GVVPRFIEFLSRDDFPQLQFE 93
           M+  ++S     QL AT +FRKLLS E +PPI+EVI + GVV RF+EFL R +   LQFE
Sbjct: 22  MIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFE 81
Query: 94  AAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDL 153
           +AW LTNIASG S  TR+VI  GAVPIF+ LLSS  +DV+EQAVWALGN+AGDS  CRD 
Sbjct: 82  SAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDY 141
Query: 154 VLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIHSN 212
           VL    L PLL  F++  +L+M RNA W LSN CRGK P P F +  P L  L  L+  +
Sbjct: 142 VLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVS 201
Query: 213 DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTG 272
           D +VL DACWALSYLSDG NDKIQAVI+AGVC RLVELL H    V+ PALR VGNIVTG
Sbjct: 202 DTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTG 261
Query: 273 DDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXXXXXXXPL 332
           DD+QTQ I+N  AL   L  L  + K+SIKKEACWTISNITAGN               L
Sbjct: 262 DDIQTQVILNCSALQ-SLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPAL 320
Query: 333 VNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLE 392
           +++L  AEF  +KEAAWAI+NATSGGS EQIK+LV  GCIKPLCDLL   D +IV V L 
Sbjct: 321 ISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALN 380
Query: 393 GLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYW 452
           GLENIL+ GE E     T G+N +   I++A GL+KIE LQSH+N EIY+KA  ++E Y+
Sbjct: 381 GLENILRLGEQEAKRNGT-GINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYF 439

>pdb|2JDQ|A Chain A, C-Terminal Domain Of Influenza A Virus Polymerase Pb2 Subunit In Complex With Human Importin Alpha5 Length = 450

Iteration: 1
 Score =  451 bits (1159), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 247/420 (58%), Positives = 294/420 (70%), Gaps = 4/420 (0%)
Query: 35  MVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQS-GVVPRFIEFLSRDDFPQLQFE 93
           M+  ++S     QL AT +FRKLLS E +PPI+EVI + GVV RF+EFL R +   LQFE
Sbjct: 25  MIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFE 84
Query: 94  AAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDL 153
           +AW LTNIASG S  TR+VI  GAVPIF+ LLSS  +DV+EQAVWALGN+AGDS  CRD 
Sbjct: 85  SAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDY 144
Query: 154 VLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIHSN 212
           VL    L PLL  F++  +L+M RNA W LSN CRGK P P F +  P L  L  L+  +
Sbjct: 145 VLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVS 204
Query: 213 DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTG 272
           D +VL DACWALSYLSDG NDKIQAVI+AGVC RLVELL H    V+ PALR VGNIVTG
Sbjct: 205 DTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTG 264
Query: 273 DDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXXXXXXXPL 332
           DD+QTQ I+N  AL   L  L  + K+SIKKEACWTISNITAGN               L
Sbjct: 265 DDIQTQVILNCSALQ-SLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPAL 323
Query: 333 VNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLE 392
           +++L  AEF  +KEAAWAI+NATSGGS EQIK+LV  GCIKPLCDLL   D +IV V L 
Sbjct: 324 ISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALN 383
Query: 393 GLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYW 452
           GLENIL+ GE E     T G+N +   I++A GL+KIE LQSH+N EIY+KA  ++E Y+
Sbjct: 384 GLENILRLGEQEAKRNGT-GINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYF 442

>pdb|1WA5|B Chain B, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 530

Iteration: 1
 Score =  444 bits (1142), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 244/433 (56%), Positives = 298/433 (68%), Gaps = 7/433 (1%)
Query: 23  FIIQLQLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFL 82
           F  QLQ E LP M   + SDD   QL AT +FR++LS E  PPI+ VIQ+GVVPR +EF+
Sbjct: 81  FYSQLQQE-LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFM 139
Query: 83  SRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGN 142
             +    LQ EAAWALTNIASGTS  T+VV+D  AVP+F++LL + + +V+EQA+WALGN
Sbjct: 140 RENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGN 199
Query: 143 VAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG-KPQPLFEQTRPA 201
           VAGDS   RD VL   A+ P+L  FN + K S++R ATWTLSN CRG KPQP +     A
Sbjct: 200 VAGDSTDYRDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQA 258
Query: 202 LPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIP 261
           LP L +LI+S D E L DACWA+SYLSDG  + IQAVI+  +  RLVELL H S  V  P
Sbjct: 259 LPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTP 318
Query: 262 ALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXX 321
           ALR VGNIVTG+D+QTQ +IN   LP L  LL  + K++IKKEACWTISNITAGN     
Sbjct: 319 ALRAVGNIVTGNDLQTQVVINAGVLPALR-LLLSSPKENIKKEACWTISNITAGNTEQIQ 377
Query: 322 XXXXXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSN--EQIKFLVSQGCIKPLCDLL 379
                    PLV LL  AE++ KKEA WAISNA+SGG    + I++LVSQGCIKPLCDLL
Sbjct: 378 AVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLL 437
Query: 380 NCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTE 439
              D RI+ V L+ LENILK GEA+K       +N  A  I+ A G+EKI N Q ++N +
Sbjct: 438 EIADNRIIEVTLDALENILKMGEADKEARGL-NINENADFIEKAGGMEKIFNCQQNENDK 496
Query: 440 IYEKAVKILETYW 452
           IYEKA KI+ETY+
Sbjct: 497 IYEKAYKIIETYF 509

>pdb|1BK5|A Chain A, Karyopherin Alpha From Saccharomyces Cerevisiae Length = 422

Iteration: 1
 Score =  440 bits (1132), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 239/424 (56%), Positives = 293/424 (69%), Gaps = 6/424 (1%)
Query: 32  LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQ 91
           LP M   + SDD   QL AT +FR++LS E  PPI+ VIQ+GVVPR +EF+  +    LQ
Sbjct: 1   LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQ 60
Query: 92  FEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR 151
            EAAWALTNIASGTS  T+VV+D  AVP+F++LL + + +V+EQA+WALGNVAGDS   R
Sbjct: 61  LEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYR 120
Query: 152 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG-KPQPLFEQTRPALPALERLIH 210
           D VL   A+ P+L  FN + K S++R ATWTLSN CRG KPQP +     ALP L +LI+
Sbjct: 121 DYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIY 179
Query: 211 SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIV 270
           S D E L DACWA+SYLSDG  + IQAVI+  +  RLVELL H S  V  PALR VGNIV
Sbjct: 180 SMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIV 239
Query: 271 TGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXXXXXXX 330
           TG+D+QTQ +IN   LP  L LL  + K++IKKEACWTISNITAGN              
Sbjct: 240 TGNDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIP 298
Query: 331 PLVNLLLNAEFEIKKEAAWAISNATSGGSN--EQIKFLVSQGCIKPLCDLLNCPDPRIVT 388
           PLV LL  AE++ KKEA WAISNA+SGG    + I++LVSQGCIKPLCDLL   D RI+ 
Sbjct: 299 PLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIE 358
Query: 389 VCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKIL 448
           V L+ LENILK GEA+K       +N  A  I+ A G+EKI N Q ++N +IYEKA KI+
Sbjct: 359 VTLDALENILKMGEADKEARGL-NINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKII 417
Query: 449 ETYW 452
           ETY+
Sbjct: 418 ETYF 421

>pdb|1BK6|A Chain A, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls Length = 422

Iteration: 1
 Score =  439 bits (1130), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 238/424 (56%), Positives = 293/424 (69%), Gaps = 6/424 (1%)
Query: 32  LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQ 91
           LP M   + SDD   QL AT +FR++LS E  PPI+ VIQ+GVVPR +EF+  +    LQ
Sbjct: 1   LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQ 60
Query: 92  FEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR 151
            EAAWALTNIASGTS  T+VV+D  AVP+F++LL + + +V+EQA+WALGNVAGDS   R
Sbjct: 61  LEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYR 120
Query: 152 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG-KPQPLFEQTRPALPALERLIH 210
           D VL   A+ P+L  FN + K S++R ATWTLSN CRG KPQP +     ALP L +LI+
Sbjct: 121 DYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIY 179
Query: 211 SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIV 270
           S D E L DACWA+SYLSDG  + IQAVI+  +  RLVELL H S  V  PALR VGNIV
Sbjct: 180 SMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIV 239
Query: 271 TGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXXXXXXX 330
           TG+D+QTQ +IN   LP  L LL  + K++IKKEACWTISNITAGN              
Sbjct: 240 TGNDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIP 298
Query: 331 PLVNLLLNAEFEIKKEAAWAISNATSGGSN--EQIKFLVSQGCIKPLCDLLNCPDPRIVT 388
           PLV LL  AE++ KKEA WAISNA+SGG    + I++LVSQGCIKPLCDLL   D RI+ 
Sbjct: 299 PLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIE 358
Query: 389 VCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKIL 448
           V L+ LENI+K GEA+K       +N  A  I+ A G+EKI N Q ++N +IYEKA KI+
Sbjct: 359 VTLDALENIIKMGEADKEARGL-NINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKII 417
Query: 449 ETYW 452
           ETY+
Sbjct: 418 ETYF 421

>pdb|1EE5|A Chain A, Yeast Karyopherin (Importin) Alpha In A Complex With A Nucleoplasmin Nls Peptide Length = 424

Iteration: 1
 Score =  438 bits (1127), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 239/426 (56%), Positives = 293/426 (68%), Gaps = 6/426 (1%)
Query: 30  ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQ 89
           + LP M   + SDD   QL AT +FR++LS E  PPI+ VIQ+GVVPR +EF+  +    
Sbjct: 1   QELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEM 60
Query: 90  LQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK 149
           LQ EAAWALTNIASGTS  T+VV+D  AVP+F++LL + + +V+EQA+WALGNVAGDS  
Sbjct: 61  LQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTD 120
Query: 150 CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG-KPQPLFEQTRPALPALERL 208
            RD VL   A+ P+L  FN + K S++R ATWTLSN CRG KPQP +     ALP L +L
Sbjct: 121 YRDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKL 179
Query: 209 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN 268
           I+S D E L DACWA+SYLSDG  + IQAVI+  +  RLVELL H S  V  PALR VGN
Sbjct: 180 IYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGN 239
Query: 269 IVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXXXXX 328
           IVTG+D+QTQ +IN   LP  L LL  + K++IKKEACWTISNITAGN            
Sbjct: 240 IVTGNDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANL 298
Query: 329 XXPLVNLLLNAEFEIKKEAAWAISNATSGGSN--EQIKFLVSQGCIKPLCDLLNCPDPRI 386
             PLV LL  AE + KKEA WAISNA+SGG    + I++LVSQGCIKPLCDLL   D RI
Sbjct: 299 IPPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRI 358
Query: 387 VTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVK 446
           + V L+ LENILK GEA+K       +N  A  I+ A G+EKI N Q ++N +IYEKA K
Sbjct: 359 IEVTLDALENILKMGEADKEARGL-NINENADFIEKAGGMEKIFNCQQNENDKIYEKAYK 417
Query: 447 ILETYW 452
           I+ETY+
Sbjct: 418 IIETYF 423

>pdb|1EE4|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In A Complex With A C-Myc Nls Peptide Length = 423

Iteration: 1
 Score =  438 bits (1126), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 239/426 (56%), Positives = 293/426 (68%), Gaps = 6/426 (1%)
Query: 30  ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQ 89
           + LP M   + SDD   QL AT +FR++LS E  PPI+ VIQ+GVVPR +EF+  +    
Sbjct: 1   QELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEM 60
Query: 90  LQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK 149
           LQ EAAWALTNIASGTS  T+VV+D  AVP+F++LL + + +V+EQA+WALGNVAGDS  
Sbjct: 61  LQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTD 120
Query: 150 CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG-KPQPLFEQTRPALPALERL 208
            RD VL   A+ P+L  FN + K S++R ATWTLSN CRG KPQP +     ALP L +L
Sbjct: 121 YRDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKL 179
Query: 209 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN 268
           I+S D E L DACWA+SYLSDG  + IQAVI+  +  RLVELL H S  V  PALR VGN
Sbjct: 180 IYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGN 239
Query: 269 IVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXXXXX 328
           IVTG+D+QTQ +IN   LP  L LL  + K++IKKEACWTISNITAGN            
Sbjct: 240 IVTGNDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANL 298
Query: 329 XXPLVNLLLNAEFEIKKEAAWAISNATSGGSN--EQIKFLVSQGCIKPLCDLLNCPDPRI 386
             PLV LL  AE + KKEA WAISNA+SGG    + I++LVSQGCIKPLCDLL   D RI
Sbjct: 299 IPPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRI 358
Query: 387 VTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVK 446
           + V L+ LENILK GEA+K       +N  A  I+ A G+EKI N Q ++N +IYEKA K
Sbjct: 359 IEVTLDALENILKMGEADKEARGL-NINENADFIEKAGGMEKIFNCQQNENDKIYEKAYK 417
Query: 447 ILETYW 452
           I+ETY+
Sbjct: 418 IIETYF 423

>pdb|1UN0|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In Complex With A Nup2p N-Terminal Fragment Length = 443

Iteration: 1
 Score =  437 bits (1124), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 239/424 (56%), Positives = 292/424 (68%), Gaps = 6/424 (1%)
Query: 32  LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQ 91
           LP M   + SDD   QL AT +FR++LS E  PPI+ VIQ+GVVPR +EF+  +    LQ
Sbjct: 2   LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQ 61
Query: 92  FEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR 151
            EAAWALTNIASGTS  T+VV+D  AVP+F++LL + + +V+EQA+WALGNVAGDS   R
Sbjct: 62  LEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYR 121
Query: 152 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG-KPQPLFEQTRPALPALERLIH 210
           D VL   A+ P+L  FN + K S++R ATWTLSN CRG KPQP +     ALP L +LI+
Sbjct: 122 DYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIY 180
Query: 211 SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIV 270
           S D E L DACWA+SYLSDG  + IQAVI+  +  RLVELL H S  V  PALR VGNIV
Sbjct: 181 SMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIV 240
Query: 271 TGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXXXXXXX 330
           TG+D+QTQ +IN   LP  L LL  + K++IKKEACWTISNITAGN              
Sbjct: 241 TGNDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIP 299
Query: 331 PLVNLLLNAEFEIKKEAAWAISNATSGGSN--EQIKFLVSQGCIKPLCDLLNCPDPRIVT 388
           PLV LL  AE + KKEA WAISNA+SGG    + I++LVSQGCIKPLCDLL   D RI+ 
Sbjct: 300 PLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIE 359
Query: 389 VCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKIL 448
           V L+ LENILK GEA+K       +N  A  I+ A G+EKI N Q ++N +IYEKA KI+
Sbjct: 360 VTLDALENILKMGEADKEARGL-NINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKII 418
Query: 449 ETYW 452
           ETY+
Sbjct: 419 ETYF 422

>pdb|2C1T|A Chain A, Structure Of The Kap60p:nup2 Complex Length = 454

Iteration: 1
 Score =  437 bits (1123), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 239/424 (56%), Positives = 292/424 (68%), Gaps = 6/424 (1%)
Query: 32  LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQ 91
           LP M   + SDD   QL AT +FR++LS E  PPI+ VIQ+GVVPR +EF+  +    LQ
Sbjct: 2   LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQ 61
Query: 92  FEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR 151
            EAAWALTNIASGTS  T+VV+D  AVP+F++LL + + +V+EQA+WALGNVAGDS   R
Sbjct: 62  LEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYR 121
Query: 152 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG-KPQPLFEQTRPALPALERLIH 210
           D VL   A+ P+L  FN + K S++R ATWTLSN CRG KPQP +     ALP L +LI+
Sbjct: 122 DYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIY 180
Query: 211 SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIV 270
           S D E L DACWA+SYLSDG  + IQAVI+  +  RLVELL H S  V  PALR VGNIV
Sbjct: 181 SMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIV 240
Query: 271 TGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXXXXXXX 330
           TG+D+QTQ +IN   LP  L LL  + K++IKKEACWTISNITAGN              
Sbjct: 241 TGNDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIP 299
Query: 331 PLVNLLLNAEFEIKKEAAWAISNATSGGSN--EQIKFLVSQGCIKPLCDLLNCPDPRIVT 388
           PLV LL  AE + KKEA WAISNA+SGG    + I++LVSQGCIKPLCDLL   D RI+ 
Sbjct: 300 PLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIE 359
Query: 389 VCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKIL 448
           V L+ LENILK GEA+K       +N  A  I+ A G+EKI N Q ++N +IYEKA KI+
Sbjct: 360 VTLDALENILKMGEADKEARGL-NINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKII 418
Query: 449 ETYW 452
           ETY+
Sbjct: 419 ETYF 422

>pdb|3RZ9|A Chain A, Mouse Importin Alpha-Ku80 Nls Peptide Complex Length = 510

Iteration: 1
 Score =  389 bits (998), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 212/463 (45%), Positives = 291/463 (62%), Gaps = 16/463 (3%)
Query: 31  SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQL 90
           S+  +V G+ S++   QL AT   RKLLS E+ PPI+ +I++G++P+F+ FL + D   +
Sbjct: 58  SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 117
Query: 91  QFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 150
           QFE+AWALTNIASGTSE T+ V+D GA+P F+ LL+SP   + EQAVWALGN+AGD    
Sbjct: 118 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 177
Query: 151 RDLVLSNGALMPLLAQFN----EHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPAL 205
           RDLV+ +GA+ PLLA              LRN TWTLSN CR K P P  +     LP L
Sbjct: 178 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 237
Query: 206 ERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT 265
            RL+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL      ++ PALR 
Sbjct: 238 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 297
Query: 266 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXX 325
           +GNIVTG D QTQ +I+  AL     LLT N K +I+KEA WT+SNITAG  +       
Sbjct: 298 IGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVN 356
Query: 326 XXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPR 385
                 LV +L  A+F+ +KEAAWAI+N TSGG+ EQI +LV  G I+PL +LL+  D +
Sbjct: 357 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTK 416
Query: 386 IVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAV 445
           I+ V L+ + NI +A E    +G T  +++    I++  GL+KIE LQ H+N  +Y+ ++
Sbjct: 417 IIQVILDAISNIFQAAE---KLGETEKLSIM---IEECGGLDKIEALQRHENESVYKASL 470
Query: 446 KILETYWVXXXXXXXXXXXXATQAGFGF-AGNGLPVPSGGFNF 487
            ++E Y+              T  GF F   +G P   G FNF
Sbjct: 471 NLIEKYFSVEEEEDQNVVPETTSEGFAFQVQDGAP---GTFNF 510

>pdb|1Q1S|C Chain C, Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptide Complex Length = 466

Iteration: 1
 Score =  389 bits (998), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 212/463 (45%), Positives = 291/463 (62%), Gaps = 16/463 (3%)
Query: 31  SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQL 90
           S+  +V G+ S++   QL AT   RKLLS E+ PPI+ +I++G++P+F+ FL + D   +
Sbjct: 14  SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 73
Query: 91  QFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 150
           QFE+AWALTNIASGTSE T+ V+D GA+P F+ LL+SP   + EQAVWALGN+AGD    
Sbjct: 74  QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 133
Query: 151 RDLVLSNGALMPLLAQFN----EHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPAL 205
           RDLV+ +GA+ PLLA              LRN TWTLSN CR K P P  +     LP L
Sbjct: 134 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 193
Query: 206 ERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT 265
            RL+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL      ++ PALR 
Sbjct: 194 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 253
Query: 266 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXX 325
           +GNIVTG D QTQ +I+  AL     LLT N K +I+KEA WT+SNITAG  +       
Sbjct: 254 IGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVN 312
Query: 326 XXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPR 385
                 LV +L  A+F+ +KEAAWAI+N TSGG+ EQI +LV  G I+PL +LL+  D +
Sbjct: 313 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTK 372
Query: 386 IVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAV 445
           I+ V L+ + NI +A E    +G T  +++    I++  GL+KIE LQ H+N  +Y+ ++
Sbjct: 373 IIQVILDAISNIFQAAE---KLGETEKLSIM---IEECGGLDKIEALQRHENESVYKASL 426
Query: 446 KILETYWVXXXXXXXXXXXXATQAGFGF-AGNGLPVPSGGFNF 487
            ++E Y+              T  GF F   +G P   G FNF
Sbjct: 427 NLIEKYFSVEEEEDQNVVPETTSEGFAFQVQDGAP---GTFNF 466

>pdb|3UKW|B Chain B, Mouse Importin Alpha: Bimax1 Peptide Complex Length = 510

Iteration: 1
 Score =  389 bits (998), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 212/463 (45%), Positives = 291/463 (62%), Gaps = 16/463 (3%)
Query: 31  SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQL 90
           S+  +V G+ S++   QL AT   RKLLS E+ PPI+ +I++G++P+F+ FL + D   +
Sbjct: 58  SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 117
Query: 91  QFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 150
           QFE+AWALTNIASGTSE T+ V+D GA+P F+ LL+SP   + EQAVWALGN+AGD    
Sbjct: 118 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 177
Query: 151 RDLVLSNGALMPLLAQFN----EHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPAL 205
           RDLV+ +GA+ PLLA              LRN TWTLSN CR K P P  +     LP L
Sbjct: 178 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 237
Query: 206 ERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT 265
            RL+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL      ++ PALR 
Sbjct: 238 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 297
Query: 266 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXX 325
           +GNIVTG D QTQ +I+  AL     LLT N K +I+KEA WT+SNITAG  +       
Sbjct: 298 IGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVN 356
Query: 326 XXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPR 385
                 LV +L  A+F+ +KEAAWAI+N TSGG+ EQI +LV  G I+PL +LL+  D +
Sbjct: 357 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTK 416
Query: 386 IVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAV 445
           I+ V L+ + NI +A E    +G T  +++    I++  GL+KIE LQ H+N  +Y+ ++
Sbjct: 417 IIQVILDAISNIFQAAE---KLGETEKLSIM---IEECGGLDKIEALQRHENESVYKASL 470
Query: 446 KILETYWVXXXXXXXXXXXXATQAGFGF-AGNGLPVPSGGFNF 487
            ++E Y+              T  GF F   +G P   G FNF
Sbjct: 471 NLIEKYFSVEEEEDQNVVPETTSEGFAFQVQDGAP---GTFNF 510

>pdb|4BA3|A Chain A, Mimp_alphadibb_a89nls Length = 496

Iteration: 1
 Score =  388 bits (997), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 212/463 (45%), Positives = 291/463 (62%), Gaps = 16/463 (3%)
Query: 31  SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQL 90
           S+  +V G+ S++   QL AT   RKLLS E+ PPI+ +I++G++P+F+ FL + D   +
Sbjct: 44  SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 103
Query: 91  QFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 150
           QFE+AWALTNIASGTSE T+ V+D GA+P F+ LL+SP   + EQAVWALGN+AGD    
Sbjct: 104 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 163
Query: 151 RDLVLSNGALMPLLAQFN----EHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPAL 205
           RDLV+ +GA+ PLLA              LRN TWTLSN CR K P P  +     LP L
Sbjct: 164 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 223
Query: 206 ERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT 265
            RL+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL      ++ PALR 
Sbjct: 224 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 283
Query: 266 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXX 325
           +GNIVTG D QTQ +I+  AL     LLT N K +I+KEA WT+SNITAG  +       
Sbjct: 284 IGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVN 342
Query: 326 XXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPR 385
                 LV +L  A+F+ +KEAAWAI+N TSGG+ EQI +LV  G I+PL +LL+  D +
Sbjct: 343 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTK 402
Query: 386 IVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAV 445
           I+ V L+ + NI +A E    +G T  +++    I++  GL+KIE LQ H+N  +Y+ ++
Sbjct: 403 IIQVILDAISNIFQAAE---KLGETEKLSIM---IEECGGLDKIEALQRHENESVYKASL 456
Query: 446 KILETYWVXXXXXXXXXXXXATQAGFGF-AGNGLPVPSGGFNF 487
            ++E Y+              T  GF F   +G P   G FNF
Sbjct: 457 NLIEKYFSVEEEEDQNVVPETTSEGFAFQVQDGAP---GTFNF 496

>pdb|1EJL|I Chain I, Mouse Importin Alpha-Sv40 Large T Antigen Nls Peptide Complex Length = 460

Iteration: 1
 Score =  388 bits (996), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 212/463 (45%), Positives = 291/463 (62%), Gaps = 16/463 (3%)
Query: 31  SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQL 90
           S+  +V G+ S++   QL AT   RKLLS E+ PPI+ +I++G++P+F+ FL + D   +
Sbjct: 8   SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 67
Query: 91  QFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 150
           QFE+AWALTNIASGTSE T+ V+D GA+P F+ LL+SP   + EQAVWALGN+AGD    
Sbjct: 68  QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 127
Query: 151 RDLVLSNGALMPLLAQFN----EHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPAL 205
           RDLV+ +GA+ PLLA              LRN TWTLSN CR K P P  +     LP L
Sbjct: 128 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 187
Query: 206 ERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT 265
            RL+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL      ++ PALR 
Sbjct: 188 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 247
Query: 266 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXX 325
           +GNIVTG D QTQ +I+  AL     LLT N K +I+KEA WT+SNITAG  +       
Sbjct: 248 IGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVN 306
Query: 326 XXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPR 385
                 LV +L  A+F+ +KEAAWAI+N TSGG+ EQI +LV  G I+PL +LL+  D +
Sbjct: 307 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTK 366
Query: 386 IVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAV 445
           I+ V L+ + NI +A E    +G T  +++    I++  GL+KIE LQ H+N  +Y+ ++
Sbjct: 367 IIQVILDAISNIFQAAE---KLGETEKLSIM---IEECGGLDKIEALQRHENESVYKASL 420
Query: 446 KILETYWVXXXXXXXXXXXXATQAGFGF-AGNGLPVPSGGFNF 487
            ++E Y+              T  GF F   +G P   G FNF
Sbjct: 421 NLIEKYFSVEEEEDQNVVPETTSEGFAFQVQDGAP---GTFNF 460

>pdb|4HTV|A Chain A, Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex Length = 509

Iteration: 1
 Score =  386 bits (991), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 211/462 (45%), Positives = 290/462 (62%), Gaps = 16/462 (3%)
Query: 31  SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQL 90
           S+  +V G+ S++   QL AT   RKLLS E+ PPI+ +I++G++P+F+ FL + D   +
Sbjct: 58  SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 117
Query: 91  QFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 150
           QFE+AWALTNIASGTSE T+ V+D GA+P F+ LL+SP   + EQAVWALGN+AGD    
Sbjct: 118 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 177
Query: 151 RDLVLSNGALMPLLAQFN----EHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPAL 205
           RDLV+ +GA+ PLLA              LRN TWTLSN CR K P P  +     LP L
Sbjct: 178 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 237
Query: 206 ERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT 265
            RL+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL      ++ PALR 
Sbjct: 238 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 297
Query: 266 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXX 325
           +GNIVTG D QTQ +I+  AL     LLT N K +I+KEA WT+SNITAG  +       
Sbjct: 298 IGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVN 356
Query: 326 XXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPR 385
                 LV +L  A+F+ +KEAAWAI+N TSGG+ EQI +LV  G I+PL +LL+  D +
Sbjct: 357 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTK 416
Query: 386 IVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAV 445
           I+ V L+ + NI +A E    +G T  +++    I++  GL+KIE LQ H+N  +Y+ ++
Sbjct: 417 IIQVILDAISNIFQAAE---KLGETEKLSIM---IEECGGLDKIEALQRHENESVYKASL 470
Query: 446 KILETYWVXXXXXXXXXXXXATQAGFGF-AGNGLPVPSGGFN 486
            ++E Y+              T  GF F   +G P   G FN
Sbjct: 471 NLIEKYFSVEEEEDQNVVPETTSEGFAFQVQDGAP---GTFN 509

>pdb|3TPO|A Chain A, Crystal Structure Of D192aE396A MUTANT OF MOUSE IMPORTIN ALPHA2 Length = 529

Iteration: 1
 Score =  383 bits (983), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 210/463 (45%), Positives = 289/463 (62%), Gaps = 16/463 (3%)
Query: 31  SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQL 90
           S+  +V G+ S++   QL AT   RKLLS E+ PPI+ +I++G++P+F+ FL + D   +
Sbjct: 77  SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 136
Query: 91  QFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 150
           QFE+AWALTNIASGTSE T+ V+D GA+P F+ LL+SP   + EQAVWALGN+AG     
Sbjct: 137 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAF 196
Query: 151 RDLVLSNGALMPLLAQFN----EHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPAL 205
           RDLV+ +GA+ PLLA              LRN TWTLSN CR K P P  +     LP L
Sbjct: 197 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 256
Query: 206 ERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT 265
            RL+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL      ++ PALR 
Sbjct: 257 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 316
Query: 266 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXX 325
           +GNIVTG D QTQ +I+  AL     LLT N K +I+KEA WT+SNITAG  +       
Sbjct: 317 IGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVN 375
Query: 326 XXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPR 385
                 LV +L  A+F+ +K AAWAI+N TSGG+ EQI +LV  G I+PL +LL+  D +
Sbjct: 376 HGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTK 435
Query: 386 IVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAV 445
           I+ V L+ + NI +A E    +G T  +++    I++  GL+KIE LQ H+N  +Y+ ++
Sbjct: 436 IIQVILDAISNIFQAAE---KLGETEKLSIM---IEECGGLDKIEALQRHENESVYKASL 489
Query: 446 KILETYWVXXXXXXXXXXXXATQAGFGF-AGNGLPVPSGGFNF 487
            ++E Y+              T  GF F   +G P   G FNF
Sbjct: 490 NLIEKYFSVEEEEDQNVVPETTSEGFAFQVQDGAP---GTFNF 529

>pdb|3FEX|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex. Length = 467

Iteration: 1
 Score =  382 bits (980), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 210/463 (45%), Positives = 289/463 (62%), Gaps = 16/463 (3%)
Query: 31  SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQL 90
           S+  +V G+ S +   QL AT   RKLLS E+ PPI+ +I++G++P+F+ FL R D   +
Sbjct: 9   SVDDIVKGINSSNVENQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGRTDCSPI 68
Query: 91  QFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 150
           QFE+AWALTNIASGTSE T+ V+D GA+P F+ LL+SP   + EQAVWALGN+AGD    
Sbjct: 69  QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSVF 128
Query: 151 RDLVLSNGALMPLLAQFNEHAKLSM----LRNATWTLSNFCRGK-PQPLFEQTRPALPAL 205
           RDLV+  GA+ PLLA        S+    LRN TWTLSN CR K P P  +     LP L
Sbjct: 129 RDLVIKYGAVDPLLALLAVPDMSSLACGYLRNLTWTLSNLCRNKNPAPPIDAVEQILPTL 188
Query: 206 ERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT 265
            RL+H +D EVL D CWA+SYL+DG N++I  V++ GV P+LV+LL      ++ PALR 
Sbjct: 189 VRLLHHDDPEVLADTCWAISYLTDGPNERIGMVVKTGVVPQLVKLLGASELPIVTPALRA 248
Query: 266 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXX 325
           +GNIVTG D QTQ +I+  AL     LLT N K +I+KEA WT+SNITAG  +       
Sbjct: 249 IGNIVTGTDEQTQVVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVN 307
Query: 326 XXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPR 385
                 LV++L  A+F+ +KEA WA++N TSGG+ EQI +LV  G I+PL +LL   D +
Sbjct: 308 HGLVPFLVSVLSKADFKTQKEAVWAVTNYTSGGTVEQIVYLVHCGIIEPLMNLLTAKDTK 367
Query: 386 IVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAV 445
           I+ V L+ + NI +A E    +G T  +++    I++  GL+KIE LQ+H+N  +Y+ ++
Sbjct: 368 IILVILDAISNIFQAAE---KLGETEKLSIM---IEECGGLDKIEALQNHENESVYKASL 421
Query: 446 KILETYWVXXXXXXXXXXXXATQAGFGF-AGNGLPVPSGGFNF 487
            ++E Y+              T  G+ F   +G P   G FNF
Sbjct: 422 SLIEKYFSVEEEEDQNVVPETTSEGYTFQVQDGAP---GTFNF 461

>pdb|3L3Q|A Chain A, Mouse Importin Alpha-Peptm Nls Peptide Complex Length = 427

Iteration: 1
 Score =  382 bits (980), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 202/427 (47%), Positives = 280/427 (65%), Gaps = 12/427 (2%)
Query: 31  SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQL 90
           S+  +V G+ S++   QL AT   RKLLS E+ PPI+ +I++G++P+F+ FL + D   +
Sbjct: 7   SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 66
Query: 91  QFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 150
           QFE+AWALTNIASGTSE T+ V+D GA+P F+ LL+SP   + EQAVWALGN+AGD    
Sbjct: 67  QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 126
Query: 151 RDLVLSNGALMPLLAQFN----EHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPAL 205
           RDLV+ +GA+ PLLA              LRN TWTLSN CR K P P  +     LP L
Sbjct: 127 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 186
Query: 206 ERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT 265
            RL+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL      ++ PALR 
Sbjct: 187 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 246
Query: 266 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXX 325
           +GNIVTG D QTQ +I+  AL     LLT N K +I+KEA WT+SNITAG  +       
Sbjct: 247 IGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVN 305
Query: 326 XXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPR 385
                 LV +L  A+F+ +KEAAWAI+N TSGG+ EQI +LV  G I+PL +LL+  D +
Sbjct: 306 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTK 365
Query: 386 IVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAV 445
           I+ V L+ + NI +A E    +G T  +++    I++  GL+KIE LQ H+N  +Y+ ++
Sbjct: 366 IIQVILDAISNIFQAAE---KLGETEKLSIM---IEECGGLDKIEALQRHENESVYKASL 419
Query: 446 KILETYW 452
            ++E Y+
Sbjct: 420 NLIEKYF 426

>pdb|3VE6|A Chain A, Crystal Structure Analysis Of Venezuelan Equine Encephalitis Virus Capsid Protein Nls And Importin Alpha Length = 426

Iteration: 1
 Score =  382 bits (980), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 202/427 (47%), Positives = 280/427 (65%), Gaps = 12/427 (2%)
Query: 31  SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQL 90
           S+  +V G+ S++   QL AT   RKLLS E+ PPI+ +I++G++P+F+ FL + D   +
Sbjct: 7   SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 66
Query: 91  QFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 150
           QFE+AWALTNIASGTSE T+ V+D GA+P F+ LL+SP   + EQAVWALGN+AGD    
Sbjct: 67  QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 126
Query: 151 RDLVLSNGALMPLLAQFN----EHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPAL 205
           RDLV+ +GA+ PLLA              LRN TWTLSN CR K P P  +     LP L
Sbjct: 127 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 186
Query: 206 ERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT 265
            RL+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL      ++ PALR 
Sbjct: 187 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 246
Query: 266 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXX 325
           +GNIVTG D QTQ +I+  AL     LLT N K +I+KEA WT+SNITAG  +       
Sbjct: 247 IGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVN 305
Query: 326 XXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPR 385
                 LV +L  A+F+ +KEAAWAI+N TSGG+ EQI +LV  G I+PL +LL+  D +
Sbjct: 306 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTK 365
Query: 386 IVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAV 445
           I+ V L+ + NI +A E    +G T  +++    I++  GL+KIE LQ H+N  +Y+ ++
Sbjct: 366 IIQVILDAISNIFQAAE---KLGETEKLSIM---IEECGGLDKIEALQRHENESVYKASL 419
Query: 446 KILETYW 452
            ++E Y+
Sbjct: 420 NLIEKYF 426

>pdb|1Y2A|C Chain C, Structure Of Mammalian Importin Bound To The Non-Classical Plscr1-Nls Length = 428

Iteration: 1
 Score =  382 bits (980), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 202/427 (47%), Positives = 280/427 (65%), Gaps = 12/427 (2%)
Query: 31  SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQL 90
           S+  +V G+ S++   QL AT   RKLLS E+ PPI+ +I++G++P+F+ FL + D   +
Sbjct: 8   SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 67
Query: 91  QFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 150
           QFE+AWALTNIASGTSE T+ V+D GA+P F+ LL+SP   + EQAVWALGN+AGD    
Sbjct: 68  QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 127
Query: 151 RDLVLSNGALMPLLAQFN----EHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPAL 205
           RDLV+ +GA+ PLLA              LRN TWTLSN CR K P P  +     LP L
Sbjct: 128 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 187
Query: 206 ERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT 265
            RL+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL      ++ PALR 
Sbjct: 188 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 247
Query: 266 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXX 325
           +GNIVTG D QTQ +I+  AL     LLT N K +I+KEA WT+SNITAG  +       
Sbjct: 248 IGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVN 306
Query: 326 XXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPR 385
                 LV +L  A+F+ +KEAAWAI+N TSGG+ EQI +LV  G I+PL +LL+  D +
Sbjct: 307 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTK 366
Query: 386 IVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAV 445
           I+ V L+ + NI +A E    +G T  +++    I++  GL+KIE LQ H+N  +Y+ ++
Sbjct: 367 IIQVILDAISNIFQAAE---KLGETEKLSIM---IEECGGLDKIEALQRHENESVYKASL 420
Query: 446 KILETYW 452
            ++E Y+
Sbjct: 421 NLIEKYF 427

>pdb|3BTR|C Chain C, Ar-Nls:importin-Alpha Complex Length = 427

Iteration: 1
 Score =  382 bits (980), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 202/427 (47%), Positives = 280/427 (65%), Gaps = 12/427 (2%)
Query: 31  SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQL 90
           S+  +V G+ S++   QL AT   RKLLS E+ PPI+ +I++G++P+F+ FL + D   +
Sbjct: 8   SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 67
Query: 91  QFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 150
           QFE+AWALTNIASGTSE T+ V+D GA+P F+ LL+SP   + EQAVWALGN+AGD    
Sbjct: 68  QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 127
Query: 151 RDLVLSNGALMPLLAQFN----EHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPAL 205
           RDLV+ +GA+ PLLA              LRN TWTLSN CR K P P  +     LP L
Sbjct: 128 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 187
Query: 206 ERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT 265
            RL+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL      ++ PALR 
Sbjct: 188 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 247
Query: 266 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXX 325
           +GNIVTG D QTQ +I+  AL     LLT N K +I+KEA WT+SNITAG  +       
Sbjct: 248 IGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVN 306
Query: 326 XXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPR 385
                 LV +L  A+F+ +KEAAWAI+N TSGG+ EQI +LV  G I+PL +LL+  D +
Sbjct: 307 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTK 366
Query: 386 IVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAV 445
           I+ V L+ + NI +A E    +G T  +++    I++  GL+KIE LQ H+N  +Y+ ++
Sbjct: 367 IIQVILDAISNIFQAAE---KLGETEKLSIM---IEECGGLDKIEALQRHENESVYKASL 420
Query: 446 KILETYW 452
            ++E Y+
Sbjct: 421 NLIEKYF 427

>pdb|2YNR|A Chain A, Mimp_alphadibb_b54nls Length = 461

Iteration: 1
 Score =  381 bits (979), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 202/427 (47%), Positives = 280/427 (65%), Gaps = 12/427 (2%)
Query: 31  SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQL 90
           S+  +V G+ S++   QL AT   RKLLS E+ PPI+ +I++G++P+F+ FL + D   +
Sbjct: 42  SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 101
Query: 91  QFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 150
           QFE+AWALTNIASGTSE T+ V+D GA+P F+ LL+SP   + EQAVWALGN+AGD    
Sbjct: 102 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 161
Query: 151 RDLVLSNGALMPLLAQFN----EHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPAL 205
           RDLV+ +GA+ PLLA              LRN TWTLSN CR K P P  +     LP L
Sbjct: 162 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 221
Query: 206 ERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT 265
            RL+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL      ++ PALR 
Sbjct: 222 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 281
Query: 266 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXX 325
           +GNIVTG D QTQ +I+  AL     LLT N K +I+KEA WT+SNITAG  +       
Sbjct: 282 IGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVN 340
Query: 326 XXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPR 385
                 LV +L  A+F+ +KEAAWAI+N TSGG+ EQI +LV  G I+PL +LL+  D +
Sbjct: 341 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTK 400
Query: 386 IVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAV 445
           I+ V L+ + NI +A E    +G T  +++    I++  GL+KIE LQ H+N  +Y+ ++
Sbjct: 401 IIQVILDAISNIFQAAE---KLGETEKLSIM---IEECGGLDKIEALQRHENESVYKASL 454
Query: 446 KILETYW 452
            ++E Y+
Sbjct: 455 NLIEKYF 461

>pdb|2C1M|A Chain A, Nup50:importin-Alpha Complex Length = 424

Iteration: 1
 Score =  381 bits (979), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 202/427 (47%), Positives = 280/427 (65%), Gaps = 12/427 (2%)
Query: 31  SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQL 90
           S+  +V G+ S++   QL AT   RKLLS E+ PPI+ +I++G++P+F+ FL + D   +
Sbjct: 3   SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 62
Query: 91  QFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 150
           QFE+AWALTNIASGTSE T+ V+D GA+P F+ LL+SP   + EQAVWALGN+AGD    
Sbjct: 63  QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 122
Query: 151 RDLVLSNGALMPLLAQFN----EHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPAL 205
           RDLV+ +GA+ PLLA              LRN TWTLSN CR K P P  +     LP L
Sbjct: 123 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 182
Query: 206 ERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT 265
            RL+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL      ++ PALR 
Sbjct: 183 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 242
Query: 266 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXX 325
           +GNIVTG D QTQ +I+  AL     LLT N K +I+KEA WT+SNITAG  +       
Sbjct: 243 IGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVN 301
Query: 326 XXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPR 385
                 LV +L  A+F+ +KEAAWAI+N TSGG+ EQI +LV  G I+PL +LL+  D +
Sbjct: 302 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTK 361
Query: 386 IVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAV 445
           I+ V L+ + NI +A E    +G T  +++    I++  GL+KIE LQ H+N  +Y+ ++
Sbjct: 362 IIQVILDAISNIFQAAE---KLGETEKLSIM---IEECGGLDKIEALQRHENESVYKASL 415
Query: 446 KILETYW 452
            ++E Y+
Sbjct: 416 NLIEKYF 422

>pdb|3TPM|A Chain A, Crystal Structure Of Mal Rpel Domain In Complex With Importin-Alpha Length = 422

Iteration: 1
 Score =  381 bits (979), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 202/427 (47%), Positives = 280/427 (65%), Gaps = 12/427 (2%)
Query: 31  SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQL 90
           S+  +V G+ S++   QL AT   RKLLS E+ PPI+ +I++G++P+F+ FL + D   +
Sbjct: 3   SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 62
Query: 91  QFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 150
           QFE+AWALTNIASGTSE T+ V+D GA+P F+ LL+SP   + EQAVWALGN+AGD    
Sbjct: 63  QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 122
Query: 151 RDLVLSNGALMPLLAQFN----EHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPAL 205
           RDLV+ +GA+ PLLA              LRN TWTLSN CR K P P  +     LP L
Sbjct: 123 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 182
Query: 206 ERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT 265
            RL+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL      ++ PALR 
Sbjct: 183 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 242
Query: 266 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXX 325
           +GNIVTG D QTQ +I+  AL     LLT N K +I+KEA WT+SNITAG  +       
Sbjct: 243 IGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVN 301
Query: 326 XXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPR 385
                 LV +L  A+F+ +KEAAWAI+N TSGG+ EQI +LV  G I+PL +LL+  D +
Sbjct: 302 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTK 361
Query: 386 IVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAV 445
           I+ V L+ + NI +A E    +G T  +++    I++  GL+KIE LQ H+N  +Y+ ++
Sbjct: 362 IIQVILDAISNIFQAAE---KLGETEKLSIM---IEECGGLDKIEALQRHENESVYKASL 415
Query: 446 KILETYW 452
            ++E Y+
Sbjct: 416 NLIEKYF 422

>pdb|1IAL|A Chain A, Importin Alpha, Mouse Length = 453

Iteration: 1
 Score =  381 bits (978), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 202/427 (47%), Positives = 280/427 (65%), Gaps = 12/427 (2%)
Query: 31  SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQL 90
           S+  +V G+ S++   QL AT   RKLLS E+ PPI+ +I++G++P+F+ FL + D   +
Sbjct: 34  SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 93
Query: 91  QFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 150
           QFE+AWALTNIASGTSE T+ V+D GA+P F+ LL+SP   + EQAVWALGN+AGD    
Sbjct: 94  QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 153
Query: 151 RDLVLSNGALMPLLAQFN----EHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPAL 205
           RDLV+ +GA+ PLLA              LRN TWTLSN CR K P P  +     LP L
Sbjct: 154 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 213
Query: 206 ERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT 265
            RL+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL      ++ PALR 
Sbjct: 214 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 273
Query: 266 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXXX 325
           +GNIVTG D QTQ +I+  AL     LLT N K +I+KEA WT+SNITAG  +       
Sbjct: 274 IGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVN 332
Query: 326 XXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPR 385
                 LV +L  A+F+ +KEAAWAI+N TSGG+ EQI +LV  G I+PL +LL+  D +
Sbjct: 333 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTK 392
Query: 386 IVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAV 445
           I+ V L+ + NI +A E    +G T  +++    I++  GL+KIE LQ H+N  +Y+ ++
Sbjct: 393 IIQVILDAISNIFQAAE---KLGETEKLSIM---IEECGGLDKIEALQRHENESVYKASL 446
Query: 446 KILETYW 452
            ++E Y+
Sbjct: 447 NLIEKYF 453

>pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein Length = 252

Iteration: 1
 Score =  147 bits (371), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 91/232 (39%), Positives = 133/232 (57%), Gaps = 12/232 (5%)
Query: 32  LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQ 91
           LP M   + SDD   QL AT +F ++LS + +  I  VI +G +P  ++ LS  +   LQ
Sbjct: 14  LPQMTQQLNSDDMQEQLSATRKFSQILS-DGNEQIQAVIDAGALPALVQLLSSPNEQILQ 72
Query: 92  FEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR 151
            EA WAL+NIASG +E  + VID GA+P  V+LLSSP + + ++A+WAL N+A    +  
Sbjct: 73  -EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 131
Query: 152 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRP-----ALPALE 206
             V+  GAL P L Q        +L+ A W LSN   G      EQ +      ALPAL 
Sbjct: 132 QAVIDAGAL-PALVQLLSSPNEQILQEALWALSNIASGG----NEQIQAVIDAGALPALV 186
Query: 207 RLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSV 258
           +L+ S ++++L +A WALS ++ G N++ QAV EAG   +L +L  H +  +
Sbjct: 187 QLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKI 238

>pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein Length = 252

Iteration: 1
 Score =  141 bits (355), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 93/249 (37%), Positives = 138/249 (55%), Gaps = 16/249 (6%)
Query: 202 LPALERLIHSNDDEVLTDACWALSY-LSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLI 260
           LP + + ++S+D +    A    S  LSDG N++IQAVI+AG  P LV+LL  P+  +L 
Sbjct: 14  LPQMTQQLNSDDMQEQLSATRKFSQILSDG-NEQIQAVIDAGALPALVQLLSSPNEQILQ 72
Query: 261 PALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXX 320
            AL  + NI +G + Q Q +I+  ALP L+ LL+ +  + I +EA W +SNI +G     
Sbjct: 73  EALWALSNIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQI 131
Query: 321 XXXXXXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLN 380
                      LV LL +   +I +EA WA+SN  SGG NEQI+ ++  G +  L  LL+
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQIQAVIDAGALPALVQLLS 190
Query: 381 CPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEI 440
            P+ +I+   L  L NI   G  +K            QA+ +A  LEK+E LQSH+N +I
Sbjct: 191 SPNEQILQEALWALSNIASGGNEQK------------QAVKEAGALEKLEQLQSHENEKI 238
Query: 441 YEKAVKILE 449
            ++A + LE
Sbjct: 239 QKEAQEALE 247

>pdb|4DB6|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aii) Length = 210

Iteration: 1
 Score =  115 bits (287), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 73/208 (35%), Positives = 109/208 (52%), Gaps = 14/208 (6%)
Query: 244 CPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKK 303
            P++V+ L  P    L  ALR +  I +G + Q Q +I+  ALP L+ LL+ +  + I +
Sbjct: 14  LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQ 72
Query: 304 EACWTISNITAGNVNXXXXXXXXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQI 363
           EA W +SNI +G                LV LL +   +I +EA WA+SN  SGG NEQI
Sbjct: 73  EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQI 131
Query: 364 KFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDA 423
           + ++  G +  L  LL+ P+ +I+   L  L NI   G  +K            QA+ +A
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQK------------QAVKEA 179
Query: 424 EGLEKIENLQSHDNTEIYEKAVKILETY 451
             LEK+E LQSH+N +I ++A + LE  
Sbjct: 180 GALEKLEQLQSHENEKIQKEAQEALEKL 207

>pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii) Length = 210

Iteration: 1
 Score =  114 bits (286), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 75/197 (38%), Positives = 108/197 (54%), Gaps = 4/197 (2%)
Query: 32  LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQ 91
           LP M   + SDD   QL AT +F ++LS + +  I  VI +G +P  ++ LS  +   LQ
Sbjct: 14  LPQMTQQLNSDDMQEQLSATRKFSQILS-DGNEQIQAVIDAGALPALVQLLSSPNEQILQ 72
Query: 92  FEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR 151
            EA WAL+NIASG +E  + VID GA+P  V+LLSSP + + ++A+WAL N+A    +  
Sbjct: 73  -EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 131
Query: 152 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR-GKPQPLFEQTRPALPALERLIH 210
             V+  GAL P L Q        +L+ A W LSN    G  Q    +   AL  LE+L  
Sbjct: 132 QAVIDAGAL-PALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQS 190
Query: 211 SNDDEVLTDACWALSYL 227
             ++++  +A  AL  L
Sbjct: 191 HENEKIQKEAQEALEKL 207

>pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii) Length = 210

Iteration: 1
 Score =  105 bits (261), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 71/197 (36%), Positives = 107/197 (54%), Gaps = 4/197 (2%)
Query: 202 LPALERLIHSNDDEVLTDACWALSY-LSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLI 260
           LP + + ++S+D +    A    S  LSDG N++IQAVI+AG  P LV+LL  P+  +L 
Sbjct: 14  LPQMTQQLNSDDMQEQLSATRKFSQILSDG-NEQIQAVIDAGALPALVQLLSSPNEQILQ 72
Query: 261 PALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXX 320
            AL  + NI +G + Q Q +I+  ALP L+ LL+ +  + I +EA W +SNI +G     
Sbjct: 73  EALWALSNIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQI 131
Query: 321 XXXXXXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLN 380
                      LV LL +   +I +EA WA+SN  SGG NEQ + +   G ++ L  L +
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQKQAVKEAGALEKLEQLQS 190
Query: 381 CPDPRIVTVCLEGLENI 397
             + +I     E LE +
Sbjct: 191 HENEKIQKEAQEALEKL 207

>pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii) Length = 210

Iteration: 1
 Score =  102 bits (255), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 68/206 (33%), Positives = 105/206 (50%), Gaps = 14/206 (6%)
Query: 244 CPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKK 303
            P++ + L        + A R    I++  + Q Q +I+  ALP L+ LL+ +  + I +
Sbjct: 14  LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLS-SPNEQILQ 72
Query: 304 EACWTISNITAGNVNXXXXXXXXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQI 363
           EA W +SNI +G                LV LL +   +I +EA WA+SN  SGG NEQI
Sbjct: 73  EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQI 131
Query: 364 KFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDA 423
           + ++  G +  L  LL+ P+ +I+   L  L NI   G  +K            QA+ +A
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQK------------QAVKEA 179
Query: 424 EGLEKIENLQSHDNTEIYEKAVKILE 449
             LEK+E LQSH+N +I ++A + LE
Sbjct: 180 GALEKLEQLQSHENEKIQKEAQEALE 205

>pdb|4DB9|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aiii) Length = 210

Iteration: 1
 Score =  104 bits (260), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 74/199 (37%), Positives = 106/199 (53%), Gaps = 8/199 (4%)
Query: 32  LPAMVAGVWSDDRNIQLDATTQFRKLLSIER--SPPINEVIQSGVVPRFIEFLSRDDFPQ 89
           LP MV  + S D   Q +  +  RKL  I    +  I  VI +G +P  ++ LS  +   
Sbjct: 14  LPQMVQQLNSPD---QQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQI 70
Query: 90  LQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK 149
           LQ EA WAL+NIASG +E  + VID GA+P  V+LLSSP + + ++A+WAL N+A    +
Sbjct: 71  LQ-EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 129
Query: 150 CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR-GKPQPLFEQTRPALPALERL 208
               V+  GAL P L Q        +L+ A W LSN    G  Q    +   A PALE+L
Sbjct: 130 QIQAVIDAGAL-PALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGAEPALEQL 188
Query: 209 IHSNDDEVLTDACWALSYL 227
             S ++++  +A  AL  +
Sbjct: 189 QSSPNEKIQKEAQEALEKI 207

>pdb|4DB9|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aiii) Length = 210

Iteration: 1
 Score =  102 bits (253), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 69/206 (33%), Positives = 104/206 (50%), Gaps = 14/206 (6%)
Query: 244 CPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKK 303
            P++V+ L  P    L  ALR +  I +G + Q Q +I+  ALP L+ LL+ +  + I +
Sbjct: 14  LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQ 72
Query: 304 EACWTISNITAGNVNXXXXXXXXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQI 363
           EA W +SNI +G                LV LL +   +I +EA WA+SN  SGG NEQI
Sbjct: 73  EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQI 131
Query: 364 KFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDA 423
           + ++  G +  L  LL+ P+ +I+   L  L NI   G  +K            QA+ +A
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQK------------QAVKEA 179
Query: 424 EGLEKIENLQSHDNTEIYEKAVKILE 449
                +E LQS  N +I ++A + LE
Sbjct: 180 GAEPALEQLQSSPNEKIQKEAQEALE 205

>pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or329 Length = 252

Iteration: 1
 Score = 95.1 bits (235), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 72/245 (29%), Positives = 119/245 (48%), Gaps = 14/245 (5%)
Query: 205 LERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALR 264
           L +L+ S D E   +A   L+ ++ G    I+A+++AG    LV+LL      V   A R
Sbjct: 7   LVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAAR 66
Query: 265 TVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNXXXXXX 324
            + NI +G D   + I++   +  L+ LLT +    ++KEA   ++NI +G         
Sbjct: 67  ALANIASGPDEAIKAIVDAGGVEVLVKLLT-STDSEVQKEAARALANIASGPDEAIKAIV 125
Query: 325 XXXXXXPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDP 384
                  LV LL + + E++KEAA A++N  S G +E IK +V  G ++ L  LL   D 
Sbjct: 126 DAGGVEVLVKLLTSTDSEVQKEAARALANIAS-GPDEAIKAIVDAGGVEVLVKLLTSTDS 184
Query: 385 RIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKA 444
            +       L NI          G T  +    +AI DA G+E ++ L +  ++E+ ++A
Sbjct: 185 EVQKEAARALANIAS--------GPTSAI----KAIVDAGGVEVLQKLLTSTDSEVQKEA 232
Query: 445 VKILE 449
            + LE
Sbjct: 233 QRALE 237

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	488
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	0.0
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	9e-53
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	0.0
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	2e-15
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	8e-06
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	0.0
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	3e-52
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	1e-117
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	1e-73
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	1e-69
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	3e-65
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	8e-57
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	2e-27
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	1e-115
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	2e-84
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	2e-79
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	2e-71
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	4e-57
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	4e-29
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	4e-12
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	1e-97
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	2e-90
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	1e-58
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	1e-88
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	2e-53
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	1e-80
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	1e-77
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	7e-66
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	1e-72
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	1e-62
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	3e-27
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	2e-14
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	5e-68
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	3e-29
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	8e-23
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	6e-18
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	3e-61
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	4e-26
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	2e-25
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	5e-22
3nmz_A	458	APC variant protein; protein-protein complex, arma	6e-61
3nmz_A	458	APC variant protein; protein-protein complex, arma	1e-57
3nmz_A	458	APC variant protein; protein-protein complex, arma	2e-53
3nmz_A	458	APC variant protein; protein-protein complex, arma	2e-29
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	4e-50
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	5e-41
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	6e-21
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	7e-45
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	2e-39
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	2e-17
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	8e-39
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	1e-24
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	2e-09
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	8e-05
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	4e-22
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	2e-16
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	7e-16
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	4e-09
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	1e-08
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	1e-13
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	2e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-13
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-10
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	7e-11
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	7e-07
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	6e-04
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	2e-10
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	5e-06
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	2e-10
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	2e-09
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	2e-09
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	9e-08
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	3e-09
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	2e-06
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	1e-08
3grl_A	651	General vesicular transport factor P115; vesicle t	3e-08
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	1e-07
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	1e-07
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	8e-07
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	2e-06
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	4e-06
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	3e-07
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	4e-04
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	4e-06
1qgr_A	876	Protein (importin beta subunit); transport recepto	2e-04

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score =  553 bits (1427), Expect = 0.0
 Identities = 258/431 (59%), Positives = 307/431 (71%), Gaps = 4/431 (0%)

Query: 31  SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQS-GVVPRFIEFLSRDDFPQ 89
               M+  ++S     QL AT +FRKLLS E +PPI+EVI + GVV RF+EFL R +   
Sbjct: 21  ITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCT 80

Query: 90  LQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK 149
           LQFE+AW LTNIASG S  TR+VI  GAVPIF+ LLSS  +DV+EQAVWALGN+AGDS  
Sbjct: 81  LQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTM 140

Query: 150 CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERL 208
           CRD VL    L PLL  F++  +L+M RNA W LSN CRGK P P F +  P L  L  L
Sbjct: 141 CRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWL 200

Query: 209 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN 268
           +  +D +VL DACWALSYLSDG NDKIQAVI+AGVC RLVELL H    V+ PALR VGN
Sbjct: 201 LFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGN 260

Query: 269 IVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGI 328
           IVTGDD+QTQ I+N  AL  LL LL  + K+SIKKEACWTISNITAGN  QIQ +I+A I
Sbjct: 261 IVTGDDIQTQVILNCSALQSLLHLL-SSPKESIKKEACWTISNITAGNRAQIQTVIDANI 319

Query: 329 IGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVT 388
              L+++L  AEF  +KEAAWAI+NATSGGS EQIK+LV  GCIKPLCDLL   D +IV 
Sbjct: 320 FPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQ 379

Query: 389 VCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKIL 448
           V L GLENIL+ GE E       G+N +   I++A GL+KIE LQSH+N EIY+KA  ++
Sbjct: 380 VALNGLENILRLGEQEAKRNG-TGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLI 438

Query: 449 ETYWVEEDEDE 459
           E Y+  EDED 
Sbjct: 439 EHYFGTEDEDS 449

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score =  183 bits (466), Expect = 9e-53
 Identities = 60/351 (17%), Positives = 130/351 (37%), Gaps = 56/351 (15%)

Query: 100 NIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVA--GDSPKCRDLVLSN 157
                   N  +          + ++ S + + +  A      +     +P   +++ + 
Sbjct: 4   GFHEAQINNMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTP 63

Query: 158 GALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVL 217
           G +                                            +E L    +  + 
Sbjct: 64  GVVARF-----------------------------------------VEFLKRKENCTLQ 82

Query: 218 TDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQT 277
            ++ W L+ ++ G + + + VI+AG  P  +ELL      V   A+  +GNI     M  
Sbjct: 83  FESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCR 142

Query: 278 QCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLL 337
             +++   LP LL L ++  + ++ + A W +SN+  G     +    +  +  L  LL 
Sbjct: 143 DYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLF 202

Query: 338 NAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENI 397
            ++ ++  +A WA+S  +  G N++I+ ++  G  + L +LL   D ++V+  L  + NI
Sbjct: 203 VSDTDVLADACWALSYLSD-GPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNI 261

Query: 398 LKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKIL 448
           +   +               Q I +   L+ + +L S     I ++A   +
Sbjct: 262 VTGDDI------------QTQVILNCSALQSLLHLLSSPKESIKKEACWTI 300

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score =  544 bits (1402), Expect = 0.0
 Identities = 215/467 (46%), Positives = 298/467 (63%), Gaps = 14/467 (2%)

Query: 26  QLQLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRD 85
                S+  +V G+ S++   QL AT   RKLLS E+ PPI+ +I++G++P+F+ FL + 
Sbjct: 53  GTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKT 112

Query: 86  DFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAG 145
           D   +QFE+AWALTNIASGTSE T+ V+D GA+P F+ LL+SP   + EQAVWALGN+AG
Sbjct: 113 DCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAG 172

Query: 146 DSPKCRDLVLSNGALMPLLAQFNEH----AKLSMLRNATWTLSNFCRGK-PQPLFEQTRP 200
           D    RDLV+ +GA+ PLLA              LRN TWTLSN CR K P P  +    
Sbjct: 173 DGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQ 232

Query: 201 ALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLI 260
            LP L RL+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL      ++ 
Sbjct: 233 ILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVT 292

Query: 261 PALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQI 320
           PALR +GNIVTG D QTQ +I+  AL     LLT N K +I+KEA WT+SNITAG  +QI
Sbjct: 293 PALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQI 351

Query: 321 QAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLN 380
           Q ++  G++  LV +L  A+F+ +KEAAWAI+N TSGG+ EQI +LV  G I+PL +LL+
Sbjct: 352 QQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLS 411

Query: 381 CPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEI 440
             D +I+ V L+ + NI +A E        G     +  I++  GL+KIE LQ H+N  +
Sbjct: 412 AKDTKIIQVILDAISNIFQAAE------KLGETEKLSIMIEECGGLDKIEALQRHENESV 465

Query: 441 YEKAVKILETYWVEEDEDEPLPPGDATQAGFGFAGNGLPVPSGGFNF 487
           Y+ ++ ++E Y+  E+E++     + T  GF F         G FNF
Sbjct: 466 YKASLNLIEKYFSVEEEEDQNVVPETTSEGFAFQVQ--DGAPGTFNF 510

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 78.1 bits (192), Expect = 2e-15
 Identities = 39/196 (19%), Positives = 73/196 (37%), Gaps = 16/196 (8%)

Query: 260 IPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQ 319
            P L T  +     D+ +     + ++  ++  +  N  +  + +A      + +     
Sbjct: 33  SPDLGTDDDDKAMADIGSNQGTVNWSVEDIVKGINSNNLE-SQLQATQAARKLLSREKQP 91

Query: 320 -IQAIIEAGIIGPLVNLLLNAEF-EIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCD 377
            I  II AG+I   V+ L   +   I+ E+AWA++N  S G++EQ K +V  G I     
Sbjct: 92  PIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIAS-GTSEQTKAVVDGGAIPAFIS 150

Query: 378 LLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDN 437
           LL  P   I    +  L NI  AG+                 +     ++ +  L +  +
Sbjct: 151 LLASPHAHISEQAVWALGNI--AGDGSAF----------RDLVIKHGAIDPLLALLAVPD 198

Query: 438 TEIYEKAVKILETYWV 453
                       T+ +
Sbjct: 199 LSTLACGYLRNLTWTL 214

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 47.3 bits (112), Expect = 8e-06
 Identities = 26/148 (17%), Positives = 42/148 (28%), Gaps = 13/148 (8%)

Query: 302 KKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNE 361
                 T  +  A              +  +V  + +   E + +A  A     S     
Sbjct: 32  DSPDLGTDDDDKAMADIGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQP 91

Query: 362 QIKFLVSQGCIKPLCDLLNCPD-PRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAI 420
            I  ++  G I      L   D   I       L NI     A      T       +A+
Sbjct: 92  PIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNI-----ASGTSEQT-------KAV 139

Query: 421 DDAEGLEKIENLQSHDNTEIYEKAVKIL 448
            D   +    +L +  +  I E+AV  L
Sbjct: 140 VDGGAIPAFISLLASPHAHISEQAVWAL 167

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score =  540 bits (1393), Expect = 0.0
 Identities = 254/450 (56%), Positives = 316/450 (70%), Gaps = 11/450 (2%)

Query: 30  ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQ 89
           + LP M   + SDD   QL AT +FR++LS E  PPI+ VIQ+GVVPR +EF+  +    
Sbjct: 87  QELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEM 146

Query: 90  LQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK 149
           LQ EAAWALTNIASGTS  T+VV+D  AVP+F++LL + + +V+EQA+WALGNVAGDS  
Sbjct: 147 LQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTD 206

Query: 150 CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERL 208
            RD VL   A+ P+L  FN + K S++R ATWTLSN CRGK PQP +     ALP L +L
Sbjct: 207 YRDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKL 265

Query: 209 IHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN 268
           I+S D E L DACWA+SYLSDG  + IQAVI+  +  RLVELL H S  V  PALR VGN
Sbjct: 266 IYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGN 325

Query: 269 IVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGI 328
           IVTG+D+QTQ +IN   LP L  LL  + K++IKKEACWTISNITAGN  QIQA+I+A +
Sbjct: 326 IVTGNDLQTQVVINAGVLPALRLLL-SSPKENIKKEACWTISNITAGNTEQIQAVIDANL 384

Query: 329 IGPLVNLLLNAEFEIKKEAAWAISNATSGGSN--EQIKFLVSQGCIKPLCDLLNCPDPRI 386
           I PLV LL  AE++ KKEA WAISNA+SGG    + I++LVSQGCIKPLCDLL   D RI
Sbjct: 385 IPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRI 444

Query: 387 VTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVK 446
           + V L+ LENILK GEA+K       +N  A  I+ A G+EKI N Q ++N +IYEKA K
Sbjct: 445 IEVTLDALENILKMGEADKEARGL-NINENADFIEKAGGMEKIFNCQQNENDKIYEKAYK 503

Query: 447 ILETYWVEEDE--DEPLPPGDATQAGFGFA 474
           I+ETY+ EE++  DE + P +   AG  F 
Sbjct: 504 IIETYFGEEEDAVDETMAPQN---AGNTFG 530

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score =  184 bits (467), Expect = 3e-52
 Identities = 81/370 (21%), Positives = 145/370 (39%), Gaps = 16/370 (4%)

Query: 81  FLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWAL 140
              R +F      A     + +S +++          +P   + L+S     +  A    
Sbjct: 52  LAKRRNFIPPTDGADSDEEDESSVSADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKF 111

Query: 141 GNVAGDSPKCR-DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP-QPLFEQT 198
             +     +   D+V+  G +  L+    E+    +   A W L+N   G   Q      
Sbjct: 112 RQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVD 171

Query: 199 RPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSV 258
             A+P   +L+++   EV   A WAL  ++  + D    V++      ++ L     PS+
Sbjct: 172 ADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSL 231

Query: 259 LIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVN 318
           +  A  T+ N+  G   Q    +  QALP L  L+     +    +ACW IS ++ G   
Sbjct: 232 IRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTE-TLVDACWAISYLSDGPQE 290

Query: 319 QIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDL 378
            IQA+I+  I   LV LL +    ++  A  A+ N  + G++ Q + +++ G +  L  L
Sbjct: 291 AIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVT-GNDLQTQVVINAGVLPALRLL 349

Query: 379 LNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNT 438
           L+ P   I       + NI  AG  E             QA+ DA  +  +  L      
Sbjct: 350 LSSPKENIKKEACWTISNIT-AGNTE-----------QIQAVIDANLIPPLVKLLEVAEY 397

Query: 439 EIYEKAVKIL 448
           +  ++A   +
Sbjct: 398 KTKKEACWAI 407

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  356 bits (914), Expect = e-117
 Identities = 64/445 (14%), Positives = 130/445 (29%), Gaps = 19/445 (4%)

Query: 25  IQLQLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSR 84
           I    + + A+V  + + +       T      LS  R   +  + +SG +P  ++ L  
Sbjct: 51  IMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLL-AIFKSGGIPALVKMLGS 109

Query: 85  DDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVA 144
                + F A   L N+          V   G +   V LL+             L  +A
Sbjct: 110 PV-DSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILA 168

Query: 145 GDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPA 204
             + + + ++L++G    L+     +    +L   +  L                  + A
Sbjct: 169 YGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQA 228

Query: 205 LERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALR 264
           L   +      ++ +  W L  LSD    +       G+   LV+LL     +V+  A  
Sbjct: 229 LGLHLTDPSQRLVQNCLWTLRNLSDAATKQEG---MEGLLGTLVQLLGSDDINVVTCAAG 285

Query: 265 TVGNIVTGDDMQTQCIINHQALPCLLDLLTQ-NYKKSIKKEACWTISNITAGNVN---QI 320
            + N+   +      +     +  L+  + +   ++ I + A   + ++T+ +       
Sbjct: 286 ILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQ 345

Query: 321 QAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLN 380
            A+     +  +V LL         +A   +    +         L  QG I  L  LL 
Sbjct: 346 NAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLA-LCPANHAPLREQGAIPRLVQLLV 404

Query: 381 CPDPRIVTVCLEGLENILKAGE---------AEKNMGNTGGVNLFAQAIDDAEGLEKIEN 431
                       G                      +            I     +     
Sbjct: 405 RAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQ 464

Query: 432 LQSHDNTEIYEKAVKILETYWVEED 456
           L       I   A  +L     +++
Sbjct: 465 LLYSPIENIQRVAAGVLCELAQDKE 489

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  243 bits (622), Expect = 1e-73
 Identities = 80/419 (19%), Positives = 143/419 (34%), Gaps = 26/419 (6%)

Query: 32  LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQ 91
           +P +   +  +D+ +   A     +L   E S     +    +V   +  +   +  +  
Sbjct: 16  IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASR-HAIMRSPQMVSAIVRTMQNTNDVETA 74

Query: 92  FEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR 151
              A  L N+ S   E    +   G +P  V++L SP D V   A+  L N+       +
Sbjct: 75  RCTAGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK 133

Query: 152 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQ-PLFEQTRPALPALERLIH 210
             V   G L   +        +  L   T  L     G  +  L         AL  ++ 
Sbjct: 134 MAVRLAGGL-QKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMR 192

Query: 211 SNDDEVLT-DACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNI 269
           +   E L       L  LS  +++K  A++EAG    L   L  PS  ++   L T+ N+
Sbjct: 193 TYTYEKLLWTTSRVLKVLSVCSSNK-PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL 251

Query: 270 VTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGII 329
               D  T+       L  L+ LL  +   ++   A   +SN+T  N      + + G I
Sbjct: 252 ---SDAATKQEGMEGLLGTLVQLL-GSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGI 307

Query: 330 GPLVNLLLNA--EFEIKKEAAWAISNATSGGSN--EQIKFLVSQGCIKPLCDLLNCPDPR 385
             LV  +L A    +I + A  A+ + TS           +     +  +  LL+ P   
Sbjct: 308 EALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHW 367

Query: 386 IVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKA 444
            +     GL   L    A                + +   + ++  L    + +   + 
Sbjct: 368 PLIKATVGLIRNLALCPANH------------APLREQGAIPRLVQLLVRAHQDTQRRT 414

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  233 bits (595), Expect = 1e-69
 Identities = 61/384 (15%), Positives = 136/384 (35%), Gaps = 21/384 (5%)

Query: 66  INEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLL 125
            +  + +  +P   + L+ +D   +  +AA  +  ++   +    ++     V   VR +
Sbjct: 7   DDAELATRAIPELTKLLNDED-QVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTM 65

Query: 126 SSPTD-DVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLS 184
            +  D +        L N++    +    +  +G + P L +       S+L  A  TL 
Sbjct: 66  QNTNDVETARCTAGTLHNLS-HHREGLLAIFKSGGI-PALVKMLGSPVDSVLFYAITTLH 123

Query: 185 NFCRGKPQ-PLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGV 243
           N    +    +  +    L  +  L++  + + L      L  L+ G  +    ++ +G 
Sbjct: 124 NLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGG 183

Query: 244 CPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKK 303
              LV ++R  +   L+     V  +++        I+    +  L   L  +  + + +
Sbjct: 184 PQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHL-TDPSQRLVQ 242

Query: 304 EACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQI 363
              WT+ N++     Q       G++G LV LL + +  +   AA  +SN T   + +  
Sbjct: 243 NCLWTLRNLSDAATKQEG---MEGLLGTLVQLLGSDDINVVTCAAGILSNLTC-NNYKNK 298

Query: 364 KFLVSQGCIKPLCDLL--NCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAID 421
             +   G I+ L   +        I    +  L ++    +  +         +   A+ 
Sbjct: 299 MMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAE---------MAQNAVR 349

Query: 422 DAEGLEKIENLQSHDNTEIYEKAV 445
              GL  +  L    +     KA 
Sbjct: 350 LHYGLPVVVKLLHPPSHWPLIKAT 373

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  221 bits (565), Expect = 3e-65
 Identities = 60/344 (17%), Positives = 117/344 (34%), Gaps = 19/344 (5%)

Query: 107 ENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQ 166
                 +   A+P   +LL+     V  +A   +  ++        ++ S   +  ++  
Sbjct: 5   YQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRT 64

Query: 167 FNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSY 226
                 +   R    TL N    +   L       +PAL +++ S  D VL  A   L  
Sbjct: 65  MQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHN 124

Query: 227 LSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQAL 286
           L         AV  AG   ++V LL   +   L      +  +  G+      I+     
Sbjct: 125 LLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGP 184

Query: 287 PCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKE 346
             L++++     + +       +  ++  + N+  AI+EAG +  L   L +    + + 
Sbjct: 185 QALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK-PAIVEAGGMQALGLHLTDPSQRLVQN 243

Query: 347 AAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKN 406
             W + N +   + +       +G +  L  LL   D  +VT     L N+       K 
Sbjct: 244 CLWTLRNLSDAATKQ----EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNK- 298

Query: 407 MGNTGGVNLFAQAIDDAEGLEKIENL--QSHDNTEIYEKAVKIL 448
                        +    G+E +     ++ D  +I E A+  L
Sbjct: 299 -----------MMVCQVGGIEALVRTVLRAGDREDITEPAICAL 331

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  198 bits (505), Expect = 8e-57
 Identities = 79/473 (16%), Positives = 145/473 (30%), Gaps = 50/473 (10%)

Query: 32  LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQ 91
             A+V  + +      L  T++  K+LS+  S     ++++G +      L+     +L 
Sbjct: 184 PQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKP-AIVEAGGMQALGLHLTDPS-QRLV 241

Query: 92  FEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR 151
               W L N++      T+     G +   V+LL S   +V   A   L N+  ++ K +
Sbjct: 242 QNCLWTLRNLSD---AATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNK 298

Query: 152 DLVLSNGALMPLL-AQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRP----ALPALE 206
            +V   G +  L+        +  +   A   L +      +    Q        LP + 
Sbjct: 299 MMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVV 358

Query: 207 RLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTV 266
           +L+H      L  A   L             + E G  PRLV+LL               
Sbjct: 359 KLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGG 418

Query: 267 GNIVTGDDMQT---------------------QCIINHQALPCLLDLLTQNYKKSIKKEA 305
                 + ++                        I     +P  + LL  +  ++I++ A
Sbjct: 419 TQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLL-YSPIENIQRVA 477

Query: 306 CWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKF 365
              +  + A +    +AI   G   PL  LL +    +   AA  +   +     +  K 
Sbjct: 478 AGVLCEL-AQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKR 536

Query: 366 LVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEK-------NMGNTGGVNLFAQ 418
           L S      L             + L+        G  +        + G  G   L   
Sbjct: 537 L-SVELTSSLFRTEPMAWNETADLGLDIGAQGEPLGYRQDDPSYRSFHSGGYGQDALGMD 595

Query: 419 AIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVEEDEDEPLPPGDATQAGF 471
            + + E            +                 +D  + LPPGD+ Q  +
Sbjct: 596 PMMEHEMGGHHPGADYPVDGLPDLGHA---------QDLMDGLPPGDSNQLAW 639

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  114 bits (287), Expect = 2e-27
 Identities = 31/218 (14%), Positives = 79/218 (36%), Gaps = 15/218 (6%)

Query: 232 NDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLD 291
           N +  A +     P L +LL      V+  A   V  +   +  +   + + Q +  ++ 
Sbjct: 4   NYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVR 63

Query: 292 LLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAI 351
            +         +    T+ N++        AI ++G I  LV +L +    +   A   +
Sbjct: 64  TMQNTNDVETARCTAGTLHNLSHHREGL-LAIFKSGGIPALVKMLGSPVDSVLFYAITTL 122

Query: 352 SNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTG 411
            N        ++  +   G ++ +  LLN  + + + +  + L+ +     A  N  +  
Sbjct: 123 HNLLLHQEGAKMA-VRLAGGLQKMVALLNKTNVKFLAITTDCLQIL-----AYGNQES-- 174

Query: 412 GVNLFAQAIDDAEGLEK-IENLQSHDNTEIYEKAVKIL 448
                   I  + G +  +  ++++   ++     ++L
Sbjct: 175 -----KLIILASGGPQALVNIMRTYTYEKLLWTTSRVL 207

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  349 bits (896), Expect = e-115
 Identities = 65/437 (14%), Positives = 127/437 (29%), Gaps = 19/437 (4%)

Query: 25  IQLQLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSR 84
           I    + + A+V  + + +       T      LS  R   +  + +SG +P  ++ L  
Sbjct: 54  IMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLL-AIFKSGGIPALVKMLGS 112

Query: 85  DDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVA 144
                + F A   L N+          V   G +   V LL+             L  +A
Sbjct: 113 PV-DSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILA 171

Query: 145 GDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPA 204
             + + + ++L++G    L+     +    +L   +  L                  + A
Sbjct: 172 YGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQA 231

Query: 205 LERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALR 264
           L   +      ++ +  W L  LSD    +       G+   LV+LL     +V+  A  
Sbjct: 232 LGLHLTDPSQRLVQNCLWTLRNLSDAATKQEG---MEGLLGTLVQLLGSDDINVVTCAAG 288

Query: 265 TVGNIVTGDDMQTQCIINHQALPCLLDLLTQ-NYKKSIKKEACWTISNITAGNVN---QI 320
            + N+   +      +     +  L+  + +   ++ I + A   + ++T+ +       
Sbjct: 289 ILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQ 348

Query: 321 QAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLN 380
            A+     +  +V LL         +A   +    +         L  QG I  L  LL 
Sbjct: 349 NAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCP-ANHAPLREQGAIPRLVQLLV 407

Query: 381 CPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFA---------QAIDDAEGLEKIEN 431
                       G                 G                 I     +     
Sbjct: 408 RAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQ 467

Query: 432 LQSHDNTEIYEKAVKIL 448
           L       I   A  +L
Sbjct: 468 LLYSPIENIQRVAAGVL 484

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  268 bits (688), Expect = 2e-84
 Identities = 76/418 (18%), Positives = 138/418 (33%), Gaps = 24/418 (5%)

Query: 32  LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQ 91
           +P +   +  +D+ +   A     +L   E S     +    +V   +  +   +  +  
Sbjct: 19  IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASR-HAIMRSPQMVSAIVRTMQNTNDVETA 77

Query: 92  FEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR 151
              A  L N+ S   E    +   G +P  V++L SP D V   A+  L N+       +
Sbjct: 78  RCTAGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK 136

Query: 152 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP-QPLFEQTRPALPALERLIH 210
             V   G L   +        +  L   T  L     G     L         AL  ++ 
Sbjct: 137 MAVRLAGGL-QKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMR 195

Query: 211 SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIV 270
           +   E L      +  +    +    A++EAG    L   L  PS  ++   L T+ N+ 
Sbjct: 196 TYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL- 254

Query: 271 TGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIG 330
              D  T+       L  L+ LL  +   ++   A   +SN+T  N      + + G I 
Sbjct: 255 --SDAATKQEGMEGLLGTLVQLLGSD-DINVVTCAAGILSNLTCNNYKNKMMVCQVGGIE 311

Query: 331 PLVNLLLNA--EFEIKKEAAWAISNATSGGSN--EQIKFLVSQGCIKPLCDLLNCPDPRI 386
            LV  +L A    +I + A  A+ + TS           +     +  +  LL+ P    
Sbjct: 312 ALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWP 371

Query: 387 VTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKA 444
           +     GL   L    A                + +   + ++  L    + +   + 
Sbjct: 372 LIKATVGLIRNLALCPANH------------APLREQGAIPRLVQLLVRAHQDTQRRT 417

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  255 bits (654), Expect = 2e-79
 Identities = 75/443 (16%), Positives = 141/443 (31%), Gaps = 46/443 (10%)

Query: 32  LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQ 91
           +PA+V  + S   ++   A T    L  + +      V  +G + + +  L++ +  +  
Sbjct: 103 IPALVKMLGSPVDSVLFYAITTLHNL-LLHQEGAKMAVRLAGGLQKMVALLNKTN-VKFL 160

Query: 92  FEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTD-DVREQAVWALGNVAGDSPKC 150
                 L  +A G  E+  +++  G     V ++ + T   +       L  ++      
Sbjct: 161 AITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSN 219

Query: 151 RDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH 210
           +  ++  G +   L          +++N  WTL N      +         L  L +L+ 
Sbjct: 220 KPAIVEAGGM-QALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE--GMEGLLGTLVQLLG 276

Query: 211 SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLI--PALRTVGN 268
           S+D  V+T A   LS L+         V + G    LV  +        I  PA+  + +
Sbjct: 277 SDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRH 336

Query: 269 IVTGDD---MQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIE 325
           + +      M    +  H  LP ++ LL          +A   +    A        + E
Sbjct: 337 LTSRHQEAEMAQNAVRLHYGLPVVVKLL-HPPSHWPLIKATVGLIRNLALCPANHAPLRE 395

Query: 326 AGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG--------------------SNEQIKF 365
            G I  LV LL+ A  + ++  +   +                                 
Sbjct: 396 QGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIV 455

Query: 366 LVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEG 425
           +     I     LL  P   I  V    L  + +  EA             A+AI+    
Sbjct: 456 IRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEA-------------AEAIEAEGA 502

Query: 426 LEKIENLQSHDNTEIYEKAVKIL 448
              +  L    N  +   A  +L
Sbjct: 503 TAPLTELLHSRNEGVATYAAAVL 525

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  235 bits (600), Expect = 2e-71
 Identities = 61/354 (17%), Positives = 120/354 (33%), Gaps = 22/354 (6%)

Query: 97  ALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLS 156
           A+ N+ +         +   A+P   +LL+     V  +A   +  ++        ++ S
Sbjct: 1   AVVNLIN---YQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRS 57

Query: 157 NGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEV 216
              +  ++        +   R    TL N    +   L       +PAL +++ S  D V
Sbjct: 58  PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSV 117

Query: 217 LTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQ 276
           L  A   L  L         AV  AG   ++V LL   +   L      +  +  G+   
Sbjct: 118 LFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQES 177

Query: 277 TQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLL 336
              I+       L++++     + +       +  + +   +   AI+EAG +  L   L
Sbjct: 178 KLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVL-SVCSSNKPAIVEAGGMQALGLHL 236

Query: 337 LNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLEN 396
            +    + +   W + N +   + +       +G +  L  LL   D  +VT     L N
Sbjct: 237 TDPSQRLVQNCLWTLRNLSDAATKQ----EGMEGLLGTLVQLLGSDDINVVTCAAGILSN 292

Query: 397 ILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENL--QSHDNTEIYEKAVKIL 448
           +       K              +    G+E +     ++ D  +I E A+  L
Sbjct: 293 LTCNNYKNK------------MMVCQVGGIEALVRTVLRAGDREDITEPAICAL 334

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  196 bits (501), Expect = 4e-57
 Identities = 67/371 (18%), Positives = 125/371 (33%), Gaps = 34/371 (9%)

Query: 32  LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQ 91
             A+V  + +      L  T++  K+LS+  S     ++++G +      L+     +L 
Sbjct: 187 PQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHLTDPS-QRLV 244

Query: 92  FEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR 151
               W L N++      T+     G +   V+LL S   +V   A   L N+  ++ K +
Sbjct: 245 QNCLWTLRNLSD---AATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNK 301

Query: 152 DLVLSNGALMPLLAQ-FNEHAKLSMLRNATWTLSNFCRGKPQP----LFEQTRPALPALE 206
            +V   G +  L+        +  +   A   L +      +        +    LP + 
Sbjct: 302 MMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVV 361

Query: 207 RLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTV 266
           +L+H      L  A   L             + E G  PRLV+LL               
Sbjct: 362 KLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGG 421

Query: 267 GNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEA 326
                 + ++ + I+                      E C    +I A +V+    I   
Sbjct: 422 TQQQFVEGVRMEEIV----------------------EGCTGALHILARDVHNRIVIRGL 459

Query: 327 GIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRI 386
             I   V LL +    I++ AA  +         E  + + ++G   PL +LL+  +  +
Sbjct: 460 NTIPLFVQLLYSPIENIQRVAAGVLCELAQ--DKEAAEAIEAEGATAPLTELLHSRNEGV 517

Query: 387 VTVCLEGLENI 397
            T     L  +
Sbjct: 518 ATYAAAVLFRM 528

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  119 bits (300), Expect = 4e-29
 Identities = 51/286 (17%), Positives = 93/286 (32%), Gaps = 28/286 (9%)

Query: 32  LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFL-SRDDFPQL 90
           L  +V  + SDD N+   A      L +         V Q G +   +  +    D   +
Sbjct: 268 LGTLVQLLGSDDINVVTCAAGILSNL-TCNNYKNKMMVCQVGGIEALVRTVLRAGDREDI 326

Query: 91  QFEAAWALTNIASGTSENTRV---VIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDS 147
              A  AL ++ S   E       V  H  +P+ V+LL  P+     +A   L       
Sbjct: 327 TEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC 386

Query: 148 PKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALER 207
           P     +   GA+ P L Q    A     R  +   +     +                 
Sbjct: 387 PANHAPLREQGAI-PRLVQLLVRAHQDTQRRTSMGGTQQQFVEGV--------------- 430

Query: 208 LIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVG 267
                 +E++     AL  L+   +++I  +      P  V+LL  P  ++   A   + 
Sbjct: 431 ----RMEEIVEGCTGALHILARDVHNRI-VIRGLNTIPLFVQLLYSPIENIQRVAAGVLC 485

Query: 268 NIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNIT 313
            +    +   + I    A   L +LL  +  + +   A   +  ++
Sbjct: 486 ELAQDKEAA-EAIEAEGATAPLTELL-HSRNEGVATYAAAVLFRMS 529

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 67.1 bits (164), Expect = 4e-12
 Identities = 22/131 (16%), Positives = 34/131 (25%), Gaps = 6/131 (4%)

Query: 14  LLKPMDPMFFIIQLQLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSG 73
           LL          +                   I    T     L     +     +    
Sbjct: 405 LLVRAHQD--TQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHN--RIVIRGLN 460

Query: 74  VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVR 133
            +P F++ L       +Q  AA  L  +A    E    +   GA      LL S  + V 
Sbjct: 461 TIPLFVQLLYSPI-ENIQRVAAGVLCELAQ-DKEAAEAIEAEGATAPLTELLHSRNEGVA 518

Query: 134 EQAVWALGNVA 144
             A   L  ++
Sbjct: 519 TYAAAVLFRMS 529

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score =  293 bits (753), Expect = 1e-97
 Identities = 95/249 (38%), Positives = 143/249 (57%), Gaps = 14/249 (5%)

Query: 201 ALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLI 260
            LP + + ++S+D +    A    S +    N++IQAVI+AG  P LV+LL  P+  +L 
Sbjct: 13  ELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQ 72

Query: 261 PALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQI 320
            AL  + NI +G + Q Q +I+  ALP L+ LL  +  + I +EA W +SNI +G   QI
Sbjct: 73  EALWALSNIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQI 131

Query: 321 QAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLN 380
           QA+I+AG +  LV LL +   +I +EA WA+SN  S G NEQI+ ++  G +  L  LL+
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS-GGNEQIQAVIDAGALPALVQLLS 190

Query: 381 CPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEI 440
            P+ +I+   L  L NI   G  +K            QA+ +A  LEK+E LQSH+N +I
Sbjct: 191 SPNEQILQEALWALSNIASGGNEQK------------QAVKEAGALEKLEQLQSHENEKI 238

Query: 441 YEKAVKILE 449
            ++A + LE
Sbjct: 239 QKEAQEALE 247

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score =  275 bits (705), Expect = 2e-90
 Identities = 90/245 (36%), Positives = 135/245 (55%), Gaps = 4/245 (1%)

Query: 28  QLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDF 87
               LP M   + SDD   QL AT +F ++LS + +  I  VI +G +P  ++ LS  + 
Sbjct: 10  HGSELPQMTQQLNSDDMQEQLSATRKFSQILS-DGNEQIQAVIDAGALPALVQLLSSPN- 67

Query: 88  PQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDS 147
            Q+  EA WAL+NIASG +E  + VID GA+P  V+LLSSP + + ++A+WAL N+A   
Sbjct: 68  EQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG 127

Query: 148 PKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP-QPLFEQTRPALPALE 206
            +    V+  GAL P L Q        +L+ A W LSN   G   Q        ALPAL 
Sbjct: 128 NEQIQAVIDAGAL-PALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALV 186

Query: 207 RLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTV 266
           +L+ S ++++L +A WALS ++ G N++ QAV EAG   +L +L  H +  +   A   +
Sbjct: 187 QLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEAL 246

Query: 267 GNIVT 271
             + +
Sbjct: 247 EKLQS 251

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score =  193 bits (492), Expect = 1e-58
 Identities = 88/282 (31%), Positives = 136/282 (48%), Gaps = 44/282 (15%)

Query: 116 GAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSM 175
             +P   + L+S     +  A      +  D  +    V+  GAL               
Sbjct: 12  SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGAL--------------- 56

Query: 176 LRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKI 235
                                      PAL +L+ S ++++L +A WALS ++ G N++I
Sbjct: 57  ---------------------------PALVQLLSSPNEQILQEALWALSNIASGGNEQI 89

Query: 236 QAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQ 295
           QAVI+AG  P LV+LL  P+  +L  AL  + NI +G + Q Q +I+  ALP L+ LL  
Sbjct: 90  QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL-S 148

Query: 296 NYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNAT 355
           +  + I +EA W +SNI +G   QIQA+I+AG +  LV LL +   +I +EA WA+SN  
Sbjct: 149 SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA 208

Query: 356 SGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENI 397
           SG  NEQ + +   G ++ L  L +  + +I     E LE +
Sbjct: 209 SG-GNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKL 249

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score =  269 bits (689), Expect = 1e-88
 Identities = 77/197 (39%), Positives = 116/197 (58%), Gaps = 2/197 (1%)

Query: 201 ALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLI 260
            LP + + ++S D + L  A   LS ++ G N++IQAVI+AG  P LV+LL  P+  +L 
Sbjct: 13  ELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQ 72

Query: 261 PALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQI 320
            AL  + NI +G + Q Q +I+  ALP L+ LL  +  + I +EA W +SNI +G   QI
Sbjct: 73  EALWALSNIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQI 131

Query: 321 QAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLN 380
           QA+I+AG +  LV LL +   +I +EA WA+SN  SGG NEQ + +   G ++ L  L +
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQKQAVKEAGALEKLEQLQS 190

Query: 381 CPDPRIVTVCLEGLENI 397
             + +I     E LE +
Sbjct: 191 HENEKIQKEAQEALEKL 207

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score =  177 bits (452), Expect = 2e-53
 Identities = 68/209 (32%), Positives = 108/209 (51%), Gaps = 11/209 (5%)

Query: 68  EVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS 127
                  +P+ ++ L+  D  Q    A   L+ IASG +E  + VID GA+P  V+LLSS
Sbjct: 7   HHHHGSELPQMVQQLNSPD-QQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSS 65

Query: 128 PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFC 187
           P + + ++A+WAL N+A    +    V+  GAL  L+          +L+ A W LSN  
Sbjct: 66  PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIA 124

Query: 188 RGKPQPLFEQTRP-----ALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAG 242
            G      EQ +      ALPAL +L+ S ++++L +A WALS ++ G N++ QAV EAG
Sbjct: 125 SGGN----EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAG 180

Query: 243 VCPRLVELLRHPSPSVLIPALRTVGNIVT 271
              +L +L  H +  +   A   +  + +
Sbjct: 181 ALEKLEQLQSHENEKIQKEAQEALEKLQS 209

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  265 bits (678), Expect = 1e-80
 Identities = 71/423 (16%), Positives = 136/423 (32%), Gaps = 26/423 (6%)

Query: 30  ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFL-SRDDFP 88
           +            D + Q   T   R      R+    E +  G+     +F  +     
Sbjct: 67  QGFNQSFNQEQVADIDGQYAMTRAQR-----VRAAMFPETLDEGMQIPSTQFDSAHPTNV 121

Query: 89  QLQFEAAWALTNIASG-TSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDS 147
           Q   E +  L +      +      +   A+P   +LL+     V  +A   +  ++   
Sbjct: 122 QRLAEPSQMLKHAVVNLINYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKE 181

Query: 148 PKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALER 207
                ++ S   +  ++        +   R  + TL N    +   L       +PAL  
Sbjct: 182 ASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVN 241

Query: 208 LIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVG 267
           ++ S  D VL  A   L  L         AV  AG   ++V LL   +   L      + 
Sbjct: 242 MLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQ 301

Query: 268 NIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAG 327
            +  G+      I+       L++++ + Y           +  + +   +   AI+EAG
Sbjct: 302 ILAYGNQESKLIILASGGPQALVNIM-RTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAG 360

Query: 328 IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIV 387
            +  L   L +    + +   W + N +   + +       +G +  L  LL   D  +V
Sbjct: 361 GMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ----EGMEGLLGTLVQLLGSDDINVV 416

Query: 388 TVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENL--QSHDNTEIYEKAV 445
           T     L N+       K              +    G+E +     ++ D  +I E A+
Sbjct: 417 TCAAGILSNLTCNNYKNK------------MMVCQVGGIEALVRTVLRAGDREDITEPAI 464

Query: 446 KIL 448
             L
Sbjct: 465 CAL 467

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  257 bits (658), Expect = 1e-77
 Identities = 75/453 (16%), Positives = 146/453 (32%), Gaps = 46/453 (10%)

Query: 32  LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQ 91
           +PA+V  + S   ++   A T    L  + +      V  +G + + +  L++ +  +  
Sbjct: 236 IPALVNMLGSPVDSVLFHAITTLHNL-LLHQEGAKMAVRLAGGLQKMVALLNKTN-VKFL 293

Query: 92  FEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDD-VREQAVWALGNVAGDSPKC 150
                 L  +A G  E+  +++  G     V ++ + T + +       L  ++      
Sbjct: 294 AITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSN 352

Query: 151 RDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH 210
           +  ++  G +   L          +++N  WTL N      +         L  L +L+ 
Sbjct: 353 KPAIVEAGGM-QALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE--GMEGLLGTLVQLLG 409

Query: 211 SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR--HPSPSVLIPALRTVGN 268
           S+D  V+T A   LS L+         V + G    LV  +        +  PA+  + +
Sbjct: 410 SDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRH 469

Query: 269 IVTGDD---MQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIE 325
           + +      M    +  H  LP ++ LL          +A   +    A        + E
Sbjct: 470 LTSRHQDAEMAQNAVRLHYGLPVVVKLL-HPPSHWPLIKATVGLIRNLALCPANHAPLRE 528

Query: 326 AGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG--------------------SNEQIKF 365
            G I  LV LL+ A  + ++  +   +                                 
Sbjct: 529 QGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIV 588

Query: 366 LVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEG 425
           +     I     LL  P   I  V    L  + +  EA             A+AI+    
Sbjct: 589 IRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEA-------------AEAIEAEGA 635

Query: 426 LEKIENLQSHDNTEIYEKAVKILETYWVEEDED 458
              +  L    N  +   A  +L     ++ +D
Sbjct: 636 TAPLTELLHSRNEGVATYAAAVLFRMSEDKPQD 668

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  225 bits (575), Expect = 7e-66
 Identities = 74/431 (17%), Positives = 142/431 (32%), Gaps = 43/431 (9%)

Query: 32  LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQ 91
             A+V  + +      L  T++  K+LS+  S     ++++G +      L  D   +L 
Sbjct: 320 PQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHL-TDPSQRLV 377

Query: 92  FEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR 151
               W L N++      T+     G +   V+LL S   +V   A   L N+  ++ K +
Sbjct: 378 QNCLWTLRNLSDA---ATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNK 434

Query: 152 DLVLSNGALMPLLAQ-FNEHAKLSMLRNATWTLSNFCRG----KPQPLFEQTRPALPALE 206
            +V   G +  L+        +  +   A   L +        +      +    LP + 
Sbjct: 435 MMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVV 494

Query: 207 RLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTV 266
           +L+H      L  A   L             + E G  PRLV+LL               
Sbjct: 495 KLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGG 554

Query: 267 GNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEA 326
                 + ++ + I+                      EAC    +I A +++    I   
Sbjct: 555 TQQQFVEGVRMEEIV----------------------EACTGALHILARDIHNRIVIRGL 592

Query: 327 GIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRI 386
             I   V LL +    I++ AA  +         E  + + ++G   PL +LL+  +  +
Sbjct: 593 NTIPLFVQLLYSPIENIQRVAAGVLCELAQ--DKEAAEAIEAEGATAPLTELLHSRNEGV 650

Query: 387 VTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVK 446
            T     L  + +    +        V L          L + E +  ++  ++      
Sbjct: 651 ATYAAAVLFRMSEDKPQDYKKR--LSVELT-------SSLFRTEPMTWNETGDLGLDIGA 701

Query: 447 ILETYWVEEDE 457
             E     +D+
Sbjct: 702 QGEPLGYRQDD 712

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score =  233 bits (595), Expect = 1e-72
 Identities = 59/343 (17%), Positives = 111/343 (32%), Gaps = 34/343 (9%)

Query: 47  QLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTS 106
           Q+ A  +          P +++                         A   L  + S   
Sbjct: 15  QIRAYCETCWEWQEAHEPGMDQDKN----------PMPAPVEHQICPAVCVLMKL-SFDE 63

Query: 107 ENTRVVIDHGAVPIFVRLLSSPTD-----------DVREQAVWALGNVAGDSPKCRDLVL 155
           E+   + + G +     LL    +            +R  A  AL N+       +  + 
Sbjct: 64  EHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLC 123

Query: 156 SNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTR--PALPALERL-IHSN 212
           S    M  L    +     + +     L N          +  R   ++ AL    +   
Sbjct: 124 SMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVK 183

Query: 213 DDEVLTDACWALSYLS-DGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIP-------ALR 264
            +  L     AL  LS   T +K       G    LV  L + S +  +         LR
Sbjct: 184 KESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILR 243

Query: 265 TVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAII 324
            V +++  ++   Q +  +  L  LL  L +++  +I   AC T+ N++A N    +A+ 
Sbjct: 244 NVSSLIATNEDHRQILRENNCLQTLLQHL-KSHSLTIVSNACGTLWNLSARNPKDQEALW 302

Query: 325 EAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLV 367
           + G +  L NL+ +    I   +A A+ N  +    +     +
Sbjct: 303 DMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAKYKDANI 345

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score =  207 bits (528), Expect = 1e-62
 Identities = 55/325 (16%), Positives = 108/325 (33%), Gaps = 23/325 (7%)

Query: 106 SENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLA 165
           +           +      + +P +     AV  L  ++ D  + R  +   G L  +  
Sbjct: 22  TCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAE 80

Query: 166 ----------QFNEHAKLSMLRNATWTLSNFCRGKPQ--PLFEQTRPALPALERLIHSND 213
                       N+H  +++ R A   L+N   G           +  + AL   + S  
Sbjct: 81  LLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSES 140

Query: 214 DEVLTDACWALSYLSDGTNDKIQAVI-EAGVCPRLVELLRHPS-PSVLIPALRTVGNI-V 270
           +++       L  LS   +   +  + E G    L+E        S L   L  + N+  
Sbjct: 141 EDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSA 200

Query: 271 TGDDMQTQCIINHQALPCLLDLLT---QNYKKSIKKEACWTISNIT---AGNVNQIQAII 324
              + +        AL  L+  LT   Q    +I +     + N++   A N +  Q + 
Sbjct: 201 HCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILR 260

Query: 325 EAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDP 384
           E   +  L+  L +    I   A   + N ++  + +  + L   G +  L +L++    
Sbjct: 261 ENNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR-NPKDQEALWDMGAVSMLKNLIHSKHK 319

Query: 385 RIVTVCLEGLENILKAGEAEKNMGN 409
            I       L N++    A+    N
Sbjct: 320 MIAMGSAAALRNLMANRPAKYKDAN 344

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score =  111 bits (279), Expect = 3e-27
 Identities = 48/225 (21%), Positives = 80/225 (35%), Gaps = 14/225 (6%)

Query: 32  LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQ 91
           + A+VA + S+  ++Q    +  R L           + + G V   +E           
Sbjct: 129 MRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTL 188

Query: 92  FEAAWALTNIASGTSEN-TRVVIDHGAVPIFVRLLSSP----TDDVREQAVWALGNVAG- 145
                AL N+++  +EN   +    GA+   V  L+      T  + E     L NV+  
Sbjct: 189 KSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSL 248

Query: 146 --DSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP--QPLFEQTRPA 201
              +   R ++  N  L   L Q  +   L+++ NA  TL N     P  Q        A
Sbjct: 249 IATNEDHRQILRENNCL-QTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMG-A 306

Query: 202 LPALERLIHSNDDEVLTDACWALSYLSDG--TNDKIQAVIEAGVC 244
           +  L+ LIHS    +   +  AL  L        K   ++  G  
Sbjct: 307 VSMLKNLIHSKHKMIAMGSAAALRNLMANRPAKYKDANIMSPGSS 351

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score = 73.7 bits (181), Expect = 2e-14
 Identities = 20/148 (13%), Positives = 47/148 (31%), Gaps = 14/148 (9%)

Query: 262 ALRTVGNIVT-GDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQI 320
            L  +  I    +        +   +    + +     +     A   +  ++    ++ 
Sbjct: 9   MLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPM-PAPVEHQICPAVCVLMKLSFDEEHR- 66

Query: 321 QAIIEAGIIGPLVNLL-----------LNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQ 369
            A+ E G +  +  LL            +    +++ A  A++N T G    +      +
Sbjct: 67  HAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMK 126

Query: 370 GCIKPLCDLLNCPDPRIVTVCLEGLENI 397
           GC++ L   L      +  V    L N+
Sbjct: 127 GCMRALVAQLKSESEDLQQVIASVLRNL 154

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score =  224 bits (571), Expect = 5e-68
 Identities = 67/451 (14%), Positives = 134/451 (29%), Gaps = 71/451 (15%)

Query: 75  VPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVRE 134
           +P+ +++LS  D  + Q   A+ + +         + V   G +   V LL SP  +V++
Sbjct: 4   IPKAVQYLSSQD-EKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQ 62

Query: 135 QAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPL 194
            A  AL N+   S   +        +   ++         + +  T  L N         
Sbjct: 63  AAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKE 122

Query: 195 FEQTRPALPALERLI----------------HSNDDEVLTDACWALSYLSDGTNDKIQAV 238
            E    ALP L   +                   D EV  +A   L  LS     +    
Sbjct: 123 -ELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMR 181

Query: 239 IEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYK 298
             +G+   L+  +++   +           +    ++  +           L+   +N  
Sbjct: 182 NYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAY 241

Query: 299 KSIKKEACWTISNITAGNVNQIQAI-------------IEAGIIGPLVNLLLNAEFEIKK 345
                  C++  +    N N    +               +  I   +NL+  ++ +   
Sbjct: 242 TEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATL 301

Query: 346 EAA-WAISNATSGGSN----EQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKA 400
           EA   A+ N T+              + +  +  +  LL   +  +V      L N+ + 
Sbjct: 302 EACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH 361

Query: 401 GEAEKNMGNTGGVNL----------------------------------FAQAIDDAEGL 426
               + MGN     +                                   A+    +  L
Sbjct: 362 PLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSML 421

Query: 427 EKIENL-QSHDNTEIYEKAVKILETYWVEED 456
             I NL +S  + +  E A  +L   W  ++
Sbjct: 422 NNIINLCRSSASPKAAEAARLLLSDMWSSKE 452

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score =  119 bits (298), Expect = 3e-29
 Identities = 45/308 (14%), Positives = 92/308 (29%), Gaps = 28/308 (9%)

Query: 72  SGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDD 131
           SG              P++ F A   L N++S  +    +    G +   +  + +    
Sbjct: 141 SGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAA 200

Query: 132 VR------EQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHA--------KLSMLR 177
            R      E  +  L N++                    A   + +           M  
Sbjct: 201 SRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNN 260

Query: 178 NATWTLSNFCRG-KPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDK-- 234
           N    L       K       +      L  +  S  D  L     AL  L+        
Sbjct: 261 NYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSS 320

Query: 235 ---IQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLD 291
                  ++    P++  LL+  +  V+      + N+          ++ +Q  P +  
Sbjct: 321 GMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSR--HPLLHRVMGNQVFPEVTR 378

Query: 292 LLTQNYKKSIKKE-----ACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFE-IKK 345
           LLT +   +   E     AC+T+ N+ A      +    + ++  ++NL  ++      +
Sbjct: 379 LLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAE 438

Query: 346 EAAWAISN 353
            A   +S+
Sbjct: 439 AARLLLSD 446

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score =   99 bits (248), Expect = 8e-23
 Identities = 37/230 (16%), Positives = 79/230 (34%), Gaps = 25/230 (10%)

Query: 200 PALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVL 259
             +P   + + S D++      + + +         Q V + G   +LV+LLR P+ +V 
Sbjct: 2   LTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQ 61

Query: 260 IPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQ 319
             A   + N+V               +   + LL +     I+K+    + N+++ +   
Sbjct: 62  QAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDEL- 120

Query: 320 IQAIIEAGIIGPLVNLLL----------------NAEFEIKKEAAWAISNATSGGSNEQI 363
            +  + A  +  L + ++                  + E+   A   + N +S  +  + 
Sbjct: 121 -KEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAG-RQ 178

Query: 364 KFLVSQGCIKPLCDLLNC------PDPRIVTVCLEGLENILKAGEAEKNM 407
                 G I  L   +         D + V  C+  L N+    +AE   
Sbjct: 179 TMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPT 228

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 85.3 bits (210), Expect = 6e-18
 Identities = 34/309 (11%), Positives = 85/309 (27%), Gaps = 25/309 (8%)

Query: 158 GALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP---QPLFEQTRPALPALERLIHSNDD 214
           G  +P   Q+             + + + C       Q +++     +  L  L+ S + 
Sbjct: 1   GLTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQL--GGICKLVDLLRSPNQ 58

Query: 215 EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH-PSPSVLIPALRTVGNIVTGD 273
            V   A  AL  L   +                V LLR   +  +       + N+ + D
Sbjct: 59  NVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTD 118

Query: 274 DMQTQCIINHQALPCLLDLL---------------TQNYKKSIKKEACWTISNITAGNVN 318
           +++ +  +   ALP L D +                +     +   A   + N+++ +  
Sbjct: 119 ELKEE--LIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAG 176

Query: 319 QIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDL 378
           +      +G+I  L+  + N     + +     +      +             + L   
Sbjct: 177 RQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYN 236

Query: 379 LNCPDPRI-VTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEK-IENLQSHD 436
                     T C     + +     +  +         +  +  ++ +   +  +    
Sbjct: 237 ARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSK 296

Query: 437 NTEIYEKAV 445
                E   
Sbjct: 297 KDATLEACA 305

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score =  209 bits (532), Expect = 3e-61
 Identities = 73/457 (15%), Positives = 147/457 (32%), Gaps = 66/457 (14%)

Query: 57  LLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHG 116
           L S+ +  P     +   +P  I  L       ++  AA  L ++     +    V    
Sbjct: 32  LDSLRKGGPPPPNWRQPELPEVIAMLGFRL-DAVKSNAAAYLQHLCYRNDKVKTDVRKLK 90

Query: 117 AVPIFVRLLSSPTDDVREQAVWALGNVA-GDSPKCRDLVLSNGALMPLLAQFNEHAKLSM 175
            +P+ V LL  P  +V   A  AL N++ G     +  + +   +  L+    +   + +
Sbjct: 91  GIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDL 150

Query: 176 LRNATWTLSNFCRGKPQPLFEQTRPALPALERLI------------------HSNDDEVL 217
               T TL N          E    AL AL   +                  H   + VL
Sbjct: 151 TEVITGTLWN-LSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVL 209

Query: 218 TDACWALSYLSDGTNDKIQAVIEA-GVCPRLVELLRH----------------------- 253
           T+    L  +S   ++  + + E  G+   L+ +++                        
Sbjct: 210 TNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLS 269

Query: 254 --------PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEA 305
                    +      A     N  T      + +   + +   + LL ++   +I + +
Sbjct: 270 YQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEAS 329

Query: 306 CWTISNITAGNVNQI----QAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNE 361
              I N+ AG          A+ +   +  + +LL N    + K A+ A+ N      + 
Sbjct: 330 AGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLA---VDA 386

Query: 362 QIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAID 421
           + K L+ +  I  L   L            E  + ++        +         A+ + 
Sbjct: 387 RNKELIGKHAIPNLVKNLPGGQQNSSWNFSE--DTVISILNTINEV--IAENLEAAKKLR 442

Query: 422 DAEGLEKIENLQSHDNTE--IYEKAVKILETYWVEED 456
           + +G+EK+  +    N        A  +L+T W  ++
Sbjct: 443 ETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKE 479

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score =  110 bits (276), Expect = 4e-26
 Identities = 55/315 (17%), Positives = 107/315 (33%), Gaps = 42/315 (13%)

Query: 173 LSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTN 232
               R +  +L +  +G P P   + +P LP +  ++    D V ++A   L +L    +
Sbjct: 22  AQHERGSLASLDSLRKGGPPPPNWR-QPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRND 80

Query: 233 DKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQC-IINHQALPCLLD 291
                V +    P LV LL HP   V + A   + NI  G D   +  I N   +P L+ 
Sbjct: 81  KVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVR 140

Query: 292 LLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA------------ 339
           LL +     + +    T+ N+++ +  +++ +  A  +  L + ++              
Sbjct: 141 LLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHA--LHALTDEVIIPHSGWEREPNEDC 198

Query: 340 ------EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLL------NCPDPRIV 387
                    +    A  + N +S  S  + K     G +  L  ++         D ++V
Sbjct: 199 KPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLV 258

Query: 388 TVCLEGLENILKAGEAEKNMGN-------------TGGVNLFAQAIDDAEGLEK-IENLQ 433
             C+  L N+      E                          + +   E +   I  L+
Sbjct: 259 ENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLK 318

Query: 434 SHDNTEIYEKAVKIL 448
                 I E +   +
Sbjct: 319 ESKTPAILEASAGAI 333

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score =  108 bits (271), Expect = 2e-25
 Identities = 57/387 (14%), Positives = 113/387 (29%), Gaps = 70/387 (18%)

Query: 32  LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPI-NEVIQSGVVPRFIEFLSRDDFPQL 90
           +P +V  +    + + L A    +  +S  R       +     VP  +  L +     L
Sbjct: 92  IPVLVGLLDHPKKEVHLGACGALK-NISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDL 150

Query: 91  QFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSP------------------TDDV 132
                  L N++S   ++ ++ I   A+      +  P                   + V
Sbjct: 151 TEVITGTLWNLSS--HDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESV 208

Query: 133 REQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLS------MLRNATWTLSNF 186
                  L NV+ +  + R  +     L+  L    +           ++ N    L N 
Sbjct: 209 LTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNL 268

Query: 187 CR---------------------------GKPQPLFEQTRPALPALERLIHSNDDEVLTD 219
                                         +   L  Q       +  L  S    +L  
Sbjct: 269 SYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEA 328

Query: 220 ACWALSYLSDGT----NDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDM 275
           +  A+  L  G          A+ +      + +LL +    V+  A   + N+      
Sbjct: 329 SAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDA-- 386

Query: 276 QTQCIINHQALPCLLDLLT-------QNYKKSIKKEACWTISNITAGNVNQIQAIIEAGI 328
           + + +I   A+P L+  L         N+ +        TI+ + A N+   + + E   
Sbjct: 387 RNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQG 446

Query: 329 IGPLVNLLLNAEFEIK--KEAAWAISN 353
           I  LV +  +     K  + AA  +  
Sbjct: 447 IEKLVLINKSGNRSEKEVRAAALVLQT 473

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 98.5 bits (244), Expect = 5e-22
 Identities = 58/379 (15%), Positives = 116/379 (30%), Gaps = 35/379 (9%)

Query: 88  PQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDS 147
           P  Q E     +  +               +P  + +L    D V+  A   L ++   +
Sbjct: 20  PLAQHERGSLASLDSLRKGGPPPPNWRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRN 79

Query: 148 PKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQP--LFEQTRPALPAL 205
            K +  V     +  L+   +   K  +   A   L N   G+ Q   +  +    +PAL
Sbjct: 80  DKVKTDVRKLKGIPVLVGLLDHPKK-EVHLGACGALKNISFGRDQDNKIAIKNCDGVPAL 138

Query: 206 ERLI-HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALR 264
            RL+  + D ++       L  LS   + K++ V  A     L + +  P          
Sbjct: 139 VRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHAL--HALTDEVIIPHSGWEREPNE 196

Query: 265 TVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEAC--------WTISNITAGN 316
                           +      CL ++ ++  +   K   C        + +       
Sbjct: 197 DCKPRHIEW-----ESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQK 251

Query: 317 VNQIQAIIEAGIIGPLVNLLLNAEFEI-----KKEAAWAISNATSGGSNEQIKFLVSQGC 371
            +  + +     +  L NL      EI      +EAA  ++N T        + L     
Sbjct: 252 DSDSKLVENC--VCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEV 309

Query: 372 IKPLCDLLN-CPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIE 430
           ++    LL     P I+      ++N+                     A+   + L  I 
Sbjct: 310 VRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRY--------IRSALRQEKALSAIA 361

Query: 431 NLQSHDNTEIYEKAVKILE 449
           +L ++++  + + A   L 
Sbjct: 362 DLLTNEHERVVKAASGALR 380

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score =  205 bits (523), Expect = 6e-61
 Identities = 61/319 (19%), Positives = 110/319 (34%), Gaps = 27/319 (8%)

Query: 67  NEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLS 126
            +      + +    +           A   L  + S   E+   + + G +     LL 
Sbjct: 142 WQEAHEPGMDQDKNPMPAPV-EHQICPAVCVLMKL-SFDEEHRHAMNELGGLQAIAELLQ 199

Query: 127 -----------SPTDDVREQAVWALGNVA-GDSPKCRDLVLSNGALMPLLAQFNEHAKLS 174
                        +  +R  A  AL N+  GD      L    G +  L+AQ        
Sbjct: 200 VDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLK-SESED 258

Query: 175 MLRNATWTLSNFCRGKPQPLFEQTR--PALPAL-ERLIHSNDDEVLTDACWALSYLS-DG 230
           + +     L N          +  R   ++ AL E  +    +  L     AL  LS   
Sbjct: 259 LQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHC 318

Query: 231 TNDKIQAVIEAGVCPRLVELLRHPSPSVLIP-------ALRTVGNIVTGDDMQTQCIINH 283
           T +K       G    LV  L + S +  +         LR V +++  ++   Q +  +
Sbjct: 319 TENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILREN 378

Query: 284 QALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEI 343
             L  LL  L +++  +I   AC T+ N++A N    +A+ + G +  L NL+ +    I
Sbjct: 379 NCLQTLLQHL-KSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMI 437

Query: 344 KKEAAWAISNATSGGSNEQ 362
              +A A+ N  +    + 
Sbjct: 438 AMGSAAALRNLMANRPAKY 456

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score =  196 bits (500), Expect = 1e-57
 Identities = 73/427 (17%), Positives = 147/427 (34%), Gaps = 65/427 (15%)

Query: 28  QLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVI-QSGVVPRFIEFLSRDD 86
           ++E + ++++ + + D   + D +   R LL++  S      + QSG +P  I+ L  +D
Sbjct: 30  KVEMVYSLLSMLGTHD---KDDMS---RTLLAMSSSQDSCISMRQSGCLPLLIQLLHGND 83

Query: 87  FPQ-----------LQFEAAWALTNIASGTSENTRVVIDHGAVPI--------------- 120
                          +  A+ AL NI     ++ R   +   + +               
Sbjct: 84  KDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQ 143

Query: 121 ---------FVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLL------- 164
                        + +P +     AV  L  ++ D  + R  +   G L  +        
Sbjct: 144 EAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDC 202

Query: 165 ---AQFNEHAKLSMLRNATWTLSNFCRGKP--QPLFEQTRPALPALERLIHSNDDEVLTD 219
                 N+H  +++ R A   L+N   G    +      +  + AL   + S  +++   
Sbjct: 203 EMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQV 262

Query: 220 ACWALSYLSDGTNDKIQAVI-EAGVCPRLVELLRHPS-PSVLIPALRTVGNI-VTGDDMQ 276
               L  LS   +   +  + E G    L+E        S L   L  + N+     + +
Sbjct: 263 IASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENK 322

Query: 277 TQCIINHQALPCLLDLLT---QNYKKSIKKEACWTISNIT---AGNVNQIQAIIEAGIIG 330
                   AL  L+  LT   Q    +I +     + N++   A N +  Q + E   + 
Sbjct: 323 ADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQ 382

Query: 331 PLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVC 390
            L+  L +    I   A   + N ++  + +  + L   G +  L +L++     I    
Sbjct: 383 TLLQHLKSHSLTIVSNACGTLWNLSAR-NPKDQEALWDMGAVSMLKNLIHSKHKMIAMGS 441

Query: 391 LEGLENI 397
              L N+
Sbjct: 442 AAALRNL 448

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score =  185 bits (471), Expect = 2e-53
 Identities = 55/319 (17%), Positives = 109/319 (34%), Gaps = 26/319 (8%)

Query: 25  IQLQLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSR 84
            +     +      + +   +    A     KL   E       + + G +    E L  
Sbjct: 143 QEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRH--AMNELGGLQAIAELLQV 200

Query: 85  D----------DFPQLQFEAAWALTNIASGTSENTRVVI-DHGAVPIFVRLLSSPTDDVR 133
           D              L+  A  ALTN+  G   N   +    G +   V  L S ++D++
Sbjct: 201 DCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQ 260

Query: 134 EQAVWALGNVAGD-SPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNAT---WTLSNFCRG 189
           +     L N++       +  +   G++  L+    E  K S L++     W LS  C  
Sbjct: 261 QVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTE 320

Query: 190 KPQPLFEQTRPALPALERLI----HSNDDEVLTDACWALSYLSD---GTNDKIQAVIEAG 242
               +      AL  L   +     +N   ++      L  +S       D  Q + E  
Sbjct: 321 NKADICAVD-GALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENN 379

Query: 243 VCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIK 302
               L++ L+  S +++  A  T+ N+   +    + + +  A+  L +L+  +  K I 
Sbjct: 380 CLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLI-HSKHKMIA 438

Query: 303 KEACWTISNITAGNVNQIQ 321
             +   + N+ A    + +
Sbjct: 439 MGSAAALRNLMANRPAKYK 457

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score =  119 bits (299), Expect = 2e-29
 Identities = 52/329 (15%), Positives = 100/329 (30%), Gaps = 66/329 (20%)

Query: 91  QFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDD------------VREQAVW 138
           + + +  L  + S + ++   +   G +P+ ++LL     D             R +A  
Sbjct: 46  KDDMSRTLLAM-SSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASA 104

Query: 139 ALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQT 198
           AL N+    P  +        L  LL Q   +                C        E  
Sbjct: 105 ALHNIIHSQPDDKRGRREIRVL-HLLEQIRAY-------------CETCWE----WQEAH 146

Query: 199 RPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSV 258
            P +   +  + +  +  +  A   L  LS     +  A+ E G    + ELL+      
Sbjct: 147 EPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHR-HAMNELGGLQAIAELLQVDCEM- 204

Query: 259 LIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVN 318
                                            L   +Y  ++++ A   ++N+T G+V 
Sbjct: 205 -------------------------------YGLTNDHYSITLRRYAGMALTNLTFGDVA 233

Query: 319 QIQAII-EAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCD 377
               +    G +  LV  L +   ++++  A  + N +        K L   G +K L +
Sbjct: 234 NKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALME 293

Query: 378 LL-NCPDPRIVTVCLEGLENILKAGEAEK 405
                     +   L  L N+       K
Sbjct: 294 CALEVKKESTLKSVLSALWNLSAHCTENK 322

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score =  172 bits (436), Expect = 4e-50
 Identities = 41/240 (17%), Positives = 82/240 (34%), Gaps = 7/240 (2%)

Query: 70  IQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDH-GAVPIFVRLLSSP 128
           + S  +P       +    Q +  A   L ++     +N        G   +  R L + 
Sbjct: 36  VLSQPMPPTAGEAEQAADQQEREGALELLADLCENM-DNAADFCQLSGMHLLVGRYLEAG 94

Query: 129 TDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR 188
              +R +A   +G  + +    ++ VL  GAL  LL   +  A  ++   A + +S   R
Sbjct: 95  AAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVR 154

Query: 189 GKP--QPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPR 246
            +      F +       L R +     ++   + + L  L  G  +    +   G+  +
Sbjct: 155 EQEAGLLQFLRL-DGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQ 213

Query: 247 LVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEAC 306
           LV L+R          L  + ++VT      +     +    L +LL    +   + E  
Sbjct: 214 LVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECR--EPELGLEELLRHRCQLLQQHEEY 271

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score =  147 bits (373), Expect = 5e-41
 Identities = 42/263 (15%), Positives = 94/263 (35%), Gaps = 8/263 (3%)

Query: 198 TRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPS 257
           ++P  P       + D +    A   L+ L +  ++       +G+   +   L   +  
Sbjct: 38  SQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAG 97

Query: 258 VLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNV 317
           +   A + +G          + ++   AL  LL LL ++   +++ +A + IS +     
Sbjct: 98  LRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQE 157

Query: 318 NQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCD 377
             +   +       L+  +     ++K ++A+ + N    G  E    L S G ++ L  
Sbjct: 158 AGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLV-GHPEHKGTLCSMGMVQQLVA 216

Query: 378 LLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHD- 436
           L+           L  L +++              + L  + +       + + LQ H+ 
Sbjct: 217 LVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGL-EELLR-----HRCQLLQQHEE 270

Query: 437 NTEIYEKAVKILETYWVEEDEDE 459
             E  E   K+L+T +    +D 
Sbjct: 271 YQEELEFCEKLLQTCFSSPADDS 293

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score = 92.0 bits (228), Expect = 6e-21
 Identities = 25/182 (13%), Positives = 58/182 (31%), Gaps = 4/182 (2%)

Query: 41  SDDRNIQLDATTQFRKLLSIERSPPI-NEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALT 99
           +    ++  A               I  +V+  G + + +  L RD    ++ +A +A++
Sbjct: 93  AGAAGLRWRAAQLIGTCSQ--NVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAIS 150

Query: 100 NIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGA 159
            +           +      + +R +      ++ ++ + L N+    P+ +  + S G 
Sbjct: 151 CLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGM 210

Query: 160 LMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTD 219
           +   L             +    L +     PQ + E   P L   E L H        +
Sbjct: 211 V-QQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHE 269

Query: 220 AC 221
             
Sbjct: 270 EY 271

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score =  167 bits (423), Expect = 7e-45
 Identities = 61/447 (13%), Positives = 133/447 (29%), Gaps = 61/447 (13%)

Query: 45  NIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASG 104
           +    A+    ++                 +  +I+        + +     A+T + +G
Sbjct: 219 SSSTIASVCLARIYENMYYDEAKARFTD-QIDEYIKDKLLAPDMESKVRVTVAITALLNG 277

Query: 105 TSE-NTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPL 163
             +   +VV   G + + + + ++  +  +  A   L   +         +   G  + +
Sbjct: 278 PLDVGNQVVAREGILQMILAMATTDDELQQRVACECLIAASSKK-DKAKALCEQG--VDI 334

Query: 164 LAQFNEHAKLSMLRNATWTLSNFC-----RGKPQPLFEQTRPALPALER---LIHSNDDE 215
           L +        +   A   L             +P  +     L    R   +    D +
Sbjct: 335 LKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKD 394

Query: 216 VLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDM 275
           +   A   L+YL+     K + + +      L++L R  + S L   + T  N+    + 
Sbjct: 395 IRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEK 454

Query: 276 QT--------------------------------QCIINHQALPCLLDLLTQNYKKSIKK 303
           Q                                   + N      L  L       + ++
Sbjct: 455 QEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTES-HNSQE 513

Query: 304 EACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNE-Q 362
                ++ +  G       +++ G +  L+ + L    + K+ A  A++      + E  
Sbjct: 514 LIARVLNAV-CGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVS 572

Query: 363 IKFLVSQGCIKPLCDLLNCP-DPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAID 421
                S   I+PL +LL            L  L N+    E+ +            Q I 
Sbjct: 573 FSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVR------------QRII 620

Query: 422 DAEGLEKIENLQSHDNTEIYEKAVKIL 448
             +G+ KIE     D+  +   A + L
Sbjct: 621 KEQGVSKIEYYLMEDHLYLTRAAAQCL 647

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score =  151 bits (381), Expect = 2e-39
 Identities = 65/474 (13%), Positives = 133/474 (28%), Gaps = 91/474 (19%)

Query: 27  LQLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDD 86
           L+L             D++I+  A       L+++       +     +   ++     +
Sbjct: 376 LKLAEACRRFLIKPGKDKDIRRWAADGLA-YLTLDAECKEKLIEDKASIHALMDLARGGN 434

Query: 87  FPQLQFEAAWALTNIASGT--------------------------------SENTRVVID 114
                +       N+ +                                  ++   V+ +
Sbjct: 435 -QSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLAN 493

Query: 115 HGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLS 174
            G       L  + + + +E     L  V G   + R  V+  G +  LL    E  +  
Sbjct: 494 EGITTALCALAKTESHNSQELIARVLNAVCGL-KELRGKVVQEGGVKALLRMALEGTEKG 552

Query: 175 MLRNATWTLSNFCRGK-PQPLFEQTRP--ALPALERLIHSNDDEVLT-DACWALSYLSDG 230
             R+AT  L+       P+  F   R    +  L  L+  +   +   ++  AL+ L+  
Sbjct: 553 K-RHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASM 611

Query: 231 TNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLL 290
                Q +I+     ++   L      +                                
Sbjct: 612 NESVRQRIIKEQGVSKIEYYLMEDHLYL-------------------------------- 639

Query: 291 DLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWA 350
                       + A   + N+                +  L  L  + + E     A A
Sbjct: 640 -----------TRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGA 688

Query: 351 ISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAG-EAEKNMGN 409
           ++  TS       K L     +  L  L+  P P +    +  + N++ AG E  K +  
Sbjct: 689 LAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAGEEIAKKLFE 748

Query: 410 TGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVEEDEDEPLPP 463
           T  + L +       GL ++ +       E+  + +   E Y + E  D    P
Sbjct: 749 TDIMELLS-------GLGQLPDDTRAKAREVATQCLAAAERYRIIERSDNAEIP 795

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score = 84.9 bits (209), Expect = 2e-17
 Identities = 30/210 (14%), Positives = 61/210 (29%), Gaps = 3/210 (1%)

Query: 41  SDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTN 100
                   ++      L S+  S     +I+   V +   +L  +D   L   AA  L N
Sbjct: 592 DCTALENFESLMALTNLASMNESV-RQRIIKEQGVSKIEYYLM-EDHLYLTRAAAQCLCN 649

Query: 101 IASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGAL 160
           +            ++  V     L     ++       AL  +   S KC + +L+  + 
Sbjct: 650 LVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASW 709

Query: 161 MPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRP-ALPALERLIHSNDDEVLTD 219
           + +L     +   ++       + N      +   +      +  L  L    DD     
Sbjct: 710 LDILHTLIANPSPAVQHRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKA 769

Query: 220 ACWALSYLSDGTNDKIQAVIEAGVCPRLVE 249
              A   L+     +I    +    P +  
Sbjct: 770 REVATQCLAAAERYRIIERSDNAEIPDVFA 799

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score =  140 bits (353), Expect = 8e-39
 Identities = 38/214 (17%), Positives = 63/214 (29%), Gaps = 20/214 (9%)

Query: 75  VPRFIEFLSRDD-FPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVR 133
           + R +  L  D   P     AA  + +     SE  + V     +   ++LL    +DV+
Sbjct: 10  LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQ 69

Query: 134 EQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQP 193
                AL N+  +    +  V     +  LL    +   L   +  T  L N        
Sbjct: 70  RAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLK 129

Query: 194 LFEQTRPALPALERLI----------------HSNDDEVLTDACWALSYLSDGTNDKIQA 237
                  AL  L   I                   D ++  +    L  +S    D  +A
Sbjct: 130 N-LMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGADGRKA 188

Query: 238 VIEA-GVCPRLVELLRHPSPSVLIPALRTVGNIV 270
           +    G+   LV  +R           +   N V
Sbjct: 189 MRRCDGLIDSLVHYVRGTIADYQPDD-KATENCV 221

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score =  100 bits (251), Expect = 1e-24
 Identities = 30/204 (14%), Positives = 71/204 (34%), Gaps = 20/204 (9%)

Query: 200 PALPALERLIHSND--DEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPS 257
             L     ++ ++      ++ A   + +     ++  + V +     +L++LL+  +  
Sbjct: 8   MTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNED 67

Query: 258 VLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNV 317
           V       + N+V  D+     +     +P LL +L Q      KK+    + N+++ + 
Sbjct: 68  VQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDK 127

Query: 318 NQIQAIIEAGIIGPLVNLLL----------------NAEFEIKKEAAWAISNATSGGSNE 361
            +   I EA  +  L   ++                  +F+I       + N +S G++ 
Sbjct: 128 LKNLMITEA--LLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGADG 185

Query: 362 QIKFLVSQGCIKPLCDLLNCPDPR 385
           +       G I  L   +      
Sbjct: 186 RKAMRRCDGLIDSLVHYVRGTIAD 209

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 56.9 bits (137), Expect = 2e-09
 Identities = 29/210 (13%), Positives = 60/210 (28%), Gaps = 41/210 (19%)

Query: 28  QLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDF 87
           QL  +  ++  +   + ++Q       R  L  E +    EV +   VPR ++ L +   
Sbjct: 50  QLRGILKLLQLLKVQNEDVQRAVCGALR-NLVFEDNDNKLEVAELNGVPRLLQVLKQTRD 108

Query: 88  PQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDS 147
            + + +    L N++S   +  + ++   A+      +  P                   
Sbjct: 109 LETKKQITGLLWNLSSN--DKLKNLMITEALLTLTENIIIP------------------- 147

Query: 148 PKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQ--PLFEQTRPALPAL 205
                    +G       + N      +  N T  L N             +    + +L
Sbjct: 148 --------FSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSL 199

Query: 206 ERLIHSNDDEVLTDA-------C--WALSY 226
              +     +   D        C    LSY
Sbjct: 200 VHYVRGTIADYQPDDKATENCVCILHNLSY 229

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 43.0 bits (101), Expect = 8e-05
 Identities = 20/137 (14%), Positives = 46/137 (33%), Gaps = 21/137 (15%)

Query: 315 GNVNQIQAIIEAGIIGPLVNLLL--NAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCI 372
           G+   ++  +E       V++L   +        AA  I +      +E  K +     I
Sbjct: 1   GSNADMEMTLE-----RAVSMLEADHMLPSRISAAATFIQHECFQ-KSEARKRVNQLRGI 54

Query: 373 KPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEK-IEN 431
             L  LL   +  +       L N+       ++  N          + +  G+ + ++ 
Sbjct: 55  LKLLQLLKVQNEDVQRAVCGALRNL-----VFEDNDNK-------LEVAELNGVPRLLQV 102

Query: 432 LQSHDNTEIYEKAVKIL 448
           L+   + E  ++   +L
Sbjct: 103 LKQTRDLETKKQITGLL 119

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253

 Score = 94.8 bits (235), Expect = 4e-22
 Identities = 40/253 (15%), Positives = 88/253 (34%), Gaps = 27/253 (10%)

Query: 18  MDPMFFIIQLQLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPR 77
           ++ +  + +     L  ++  +  D   +  +A +    +          E +   ++ +
Sbjct: 20  LEKILIMAKYDESVLKKLIELLDDDLWTVVKNAISIIMVIAKT------REDLYEPMLKK 73

Query: 78  FIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAV 137
               L + +   L  E A A   +A    E  + +I     P+         +  +    
Sbjct: 74  LFSLLKKSEAIPLTQEIAKAFGQMAKEKPELVKSMI-----PVLFANYRIGDEKTKINVS 128

Query: 138 WALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQ 197
           +AL  +A  +P     ++ +   M +L+  N   KL+ L      +        + +   
Sbjct: 129 YALEEIAKANPMLMASIVRD--FMSMLSSKNREDKLTAL----NFIEAMGENSFKYV--- 179

Query: 198 TRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPS 257
             P LP +  L+H  D+ V   A  AL +L+   +   + VI      + +E L   S  
Sbjct: 180 -NPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVVI------KRLEELNDTSSL 232

Query: 258 VLIPALRTVGNIV 270
           V       +  ++
Sbjct: 233 VNKTVKEGISRLL 245

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253

 Score = 77.8 bits (191), Expect = 2e-16
 Identities = 32/201 (15%), Positives = 70/201 (34%), Gaps = 20/201 (9%)

Query: 74  VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVR 133
           V+ + IE L  DD   +   A   +  IA    +    ++      +F  L  S    + 
Sbjct: 33  VLKKLIELLD-DDLWTVVKNAISIIMVIAKTREDLYEPMLK----KLFSLLKKSEAIPLT 87

Query: 134 EQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQP 193
           ++   A G +A + P+         +++P+L             N ++ L    +  P  
Sbjct: 88  QEIAKAFGQMAKEKPELVK------SMIPVLFANYRIGDEKTKINVSYALEEIAKANP-- 139

Query: 194 LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH 253
                   +     ++ S + E    A   +  + + +   +   +     PR++ LL  
Sbjct: 140 --MLMASIVRDFMSMLSSKNREDKLTALNFIEAMGENSFKYVNPFL-----PRIINLLHD 192

Query: 254 PSPSVLIPALRTVGNIVTGDD 274
               V   A+  + ++ T +D
Sbjct: 193 GDEIVRASAVEALVHLATLND 213

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280

 Score = 76.8 bits (189), Expect = 7e-16
 Identities = 45/323 (13%), Positives = 87/323 (26%), Gaps = 69/323 (21%)

Query: 74  VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVR 133
                   L  D     +  +A  L                  AV + +   S      R
Sbjct: 24  NDDELFRLL-DDHNSLKRISSARVLQLRG-----------GQDAVRLAIEFCSDKNYIRR 71

Query: 134 EQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQP 193
           +   + LG +     KC D V +      L           +   A  + +  C+  P  
Sbjct: 72  DIGAFILGQI-KICKKCEDNVFN-----ILNNMALNDKSACVRATAIESTAQRCKKNPIY 125

Query: 194 LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH 253
             +     +   +         V     +A+S ++D               P L+ LL+ 
Sbjct: 126 SPK----IVEQSQITAFDKSTNVRRATAFAISVIND-----------KATIPLLINLLKD 170

Query: 254 PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNIT 313
           P+  V   A   +      +              C +++L     + ++ EA   +S   
Sbjct: 171 PNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDKN-EEVRIEAIIGLSYRK 220

Query: 314 AGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIK 373
              V           +  L + L      +  +   A               L  +  + 
Sbjct: 221 DKRV-----------LSVLCDELKKN--TVYDDIIEAAGE------------LGDKTLLP 255

Query: 374 PLCDLL-NCPDPRIVTVCLEGLE 395
            L  +L    D  I+T  ++ L+
Sbjct: 256 VLDTMLYKFDDNEIITSAIDKLK 278

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280

 Score = 56.7 bits (137), Expect = 4e-09
 Identities = 36/342 (10%), Positives = 89/342 (26%), Gaps = 81/342 (23%)

Query: 125 LSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLS 184
           +S+     + +A    G          D       L  LL   + ++      ++   L 
Sbjct: 1   MSNT--YQKRKASKEYGLYNQCKKLNDD------ELFRLLD--DHNSLKR--ISSARVLQ 48

Query: 185 NFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVC 244
                         + A+          +        + L  +        +   +    
Sbjct: 49  LR----------GGQDAVRLAIEFCSDKNYIRRDIGAFILGQIKIC-----KKCEDNVFN 93

Query: 245 PRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKE 304
                 L   S  V   A+ +       + + +      + +             ++++ 
Sbjct: 94  ILNNMALNDKSACVRATAIESTAQRCKKNPIYSP-----KIVEQSQITAFDKS-TNVRRA 147

Query: 305 ACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIK 364
             + IS I            +   I  L+NLL +   +++  AA+AI+            
Sbjct: 148 TAFAISVIN-----------DKATIPLLINLLKDPNGDVRNWAAFAININKYD------- 189

Query: 365 FLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDD-- 422
              +        ++L   +  +    + GL              +   +++    +    
Sbjct: 190 ---NSDIRDCFVEMLQDKNEEVRIEAIIGLSYR----------KDKRVLSVLCDELKKNT 236

Query: 423 -----AEGLEKIEN----------LQSHDNTEIYEKAVKILE 449
                 E   ++ +          L   D+ EI   A+  L+
Sbjct: 237 VYDDIIEAAGELGDKTLLPVLDTMLYKFDDNEIITSAIDKLK 278

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280

 Score = 55.6 bits (134), Expect = 1e-08
 Identities = 37/212 (17%), Positives = 66/212 (31%), Gaps = 46/212 (21%)

Query: 57  LLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHG 116
           + S  +    N +    +V +       D    ++   A+A++ I            D  
Sbjct: 112 IESTAQRCKKNPIYSPKIVEQSQITA-FDKSTNVRRATAFAISVIN-----------DKA 159

Query: 117 AVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSML 176
            +P+ + LL  P  DVR  A +A+     D+   RD        + +L   NE  +    
Sbjct: 160 TIPLLINLLKDPNGDVRNWAAFAININKYDNSDIRD------CFVEMLQDKNEEVR---- 209

Query: 177 RNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQ 236
             A   LS            + +  L  L   +    + V  D   A   L D       
Sbjct: 210 IEAIIGLSYR----------KDKRVLSVLCDEL--KKNTVYDDIIEAAGELGD------- 250

Query: 237 AVIEAGVCPRLVELLRH-PSPSVLIPALRTVG 267
                 + P L  +L       ++  A+  + 
Sbjct: 251 ----KTLLPVLDTMLYKFDDNEIITSAIDKLK 278

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 68.9 bits (169), Expect = 1e-13
 Identities = 45/245 (18%), Positives = 78/245 (31%), Gaps = 57/245 (23%)

Query: 75  VPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVRE 134
           V  +I+ L  D    ++  AA+AL  I            D  AV   ++ L      VR 
Sbjct: 21  VEMYIKNLQDDS-YYVRRAAAYALGKIG-----------DERAVEPLIKALKDEDAWVRR 68

Query: 135 QAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPL 194
            A  ALG +  +            A+ PL+    +     + ++A   L           
Sbjct: 69  AAADALGQIGDER-----------AVEPLIKAL-KDEDGWVRQSAAVALGQI-------- 108

Query: 195 FEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP 254
                 A+  L + +   D  V   A +AL  + D      +AV        L++ L+  
Sbjct: 109 --GDERAVEPLIKALKDEDWFVRIAAAFALGEIGD-----ERAV------EPLIKALKDE 155

Query: 255 SPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA 314
              V   A   +G I  G +         +    +  L  +      +K A   +    +
Sbjct: 156 DGWVRQSAADALGEI--GGE---------RVRAAMEKLA-ETGTGFARKVAVNYLETHKS 203

Query: 315 GNVNQ 319
            N + 
Sbjct: 204 FNHHH 208

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 65.1 bits (159), Expect = 2e-12
 Identities = 41/249 (16%), Positives = 78/249 (31%), Gaps = 56/249 (22%)

Query: 114 DHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKL 173
           D   V ++++ L   +  VR  A +ALG +     +  +       L+  L    +    
Sbjct: 17  DPEKVEMYIKNLQDDSYYVRRAAAYALGKIG--DERAVE------PLIKAL----KDEDA 64

Query: 174 SMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTND 233
            + R A   L                 A+  L + +   D  V   A  AL  + D    
Sbjct: 65  WVRRAAADALGQI----------GDERAVEPLIKALKDEDGWVRQSAAVALGQIGD---- 110

Query: 234 KIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLL 293
             +  +E      L++ L+     V I A   +G I  GD+         +A+  L+  L
Sbjct: 111 --ERAVEP-----LIKALKDEDWFVRIAAAFALGEI--GDE---------RAVEPLIKAL 152

Query: 294 TQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISN 353
            ++    +++ A   +  I               +   +  L        +K A   +  
Sbjct: 153 -KDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLET 200

Query: 354 ATSGGSNEQ 362
             S   +  
Sbjct: 201 HKSFNHHHH 209

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 72.6 bits (177), Expect = 1e-13
 Identities = 65/475 (13%), Positives = 142/475 (29%), Gaps = 136/475 (28%)

Query: 23  FIIQLQLESLPAMVAGVWS----DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRF 78
           F+     + +  M   + S    D   +  DA +   +L     S          +V +F
Sbjct: 29  FVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEE------MVQKF 82

Query: 79  IEFLSRDDFPQLQFEAAWALTNIAS---GTSENTRVVID-----HGAVPIFVRLLSSPTD 130
           +E + R ++        + ++ I +     S  TR+ I+     +    +F         
Sbjct: 83  VEEVLRINYK-------FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF------AKY 129

Query: 131 DV-REQAVWALGNVA-GDSPKCRDLVLSNGALMP------LLAQ--FNEHAKLSMLRNAT 180
           +V R Q    L        P  +++++ +G  +       +      +   +  M     
Sbjct: 130 NVSRLQPYLKLRQALLELRPA-KNVLI-DG--VLGSGKTWVALDVCLSYKVQCKMDFKIF 185

Query: 181 W-TLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVI 239
           W  L N C   P+ + E        L++L++  D           +  SD +   I+  I
Sbjct: 186 WLNLKN-CN-SPETVLEM-------LQKLLYQIDPN--------WTSRSDHS-SNIKLRI 227

Query: 240 EAGVCPRLVELLRHPS-PSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYK 298
            + +   L  LL+     + L+        ++   ++Q     N   L C + L T+   
Sbjct: 228 HS-IQAELRRLLKSKPYENCLL--------VL--LNVQNAKAWNAFNLSCKILLTTRF-- 274

Query: 299 KSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG 358
           K +          ++A     I           L +  +        E    +       
Sbjct: 275 KQV-------TDFLSAATTTHI----------SLDHHSMT--LT-PDEVKSLLLKYL--- 311

Query: 359 SNEQIKFLVSQGC-IKPL-CDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNT------ 410
            + + + L  +     P    ++                      E+ ++   T      
Sbjct: 312 -DCRPQDLPREVLTTNPRRLSII---------------------AESIRDGLATWDNWKH 349

Query: 411 GGVNLFAQAIDDA-EGLEKIENLQSHDNTEIYEKAVKI----LETYWVEEDEDEP 460
              +     I+ +   LE  E  +  D   ++  +  I    L   W +  + + 
Sbjct: 350 VNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDV 404

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 61.0 bits (147), Expect = 6e-10
 Identities = 91/576 (15%), Positives = 170/576 (29%), Gaps = 181/576 (31%)

Query: 1   MLWCW-------IDCFVCFSLLKPMDPMFFIIQLQLESL-PAMVAGVWSDDRNIQLDATT 52
           + W         +  FV   +L+  +  F +  ++ E   P+M+  ++ + R+   +   
Sbjct: 67  LFWTLLSKQEEMVQKFVE-EVLRI-NYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ 124

Query: 53  QFRKLLSIERSPPIN------------------------------EVIQSGVVPRFIEF- 81
            F K  ++ R  P                                +V  S  V   ++F 
Sbjct: 125 VFAKY-NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFK 183

Query: 82  -----LSRDDFPQLQFEAAWALTNIASG-------TSENTRVVIDHGAVPIFVRLLSSPT 129
                L   + P+   E    L              S N ++ I H       RLL S  
Sbjct: 184 IFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI-HSIQAELRRLLKSKP 242

Query: 130 --------DDVREQAVWALGNVAGDSPKCRDLVLSNGA---------------LMPLLAQ 166
                    +V+    W   N+      C+ L+ +                  L      
Sbjct: 243 YENCLLVLLNVQNAKAWNAFNL-----SCKILLTTRFKQVTDFLSAATTTHISLDHHSMT 297

Query: 167 FNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLI-HSNDDEVLTDACWALS 225
                  S+L             +PQ L  +     P    +I  S  D + T   W   
Sbjct: 298 LTPDEVKSLLLKYLDC-------RPQDLPREVLTTNPRRLSIIAESIRDGLAT---W--D 345

Query: 226 YLSDGTNDKIQAVIEAGV---CPRLVELLRH--------PSPSVLIPA--LRTV-GNIVT 271
                  DK+  +IE+ +    P      R         P PS  IP   L  +  +++ 
Sbjct: 346 NWKHVNCDKLTTIIESSLNVLEP---AEYRKMFDRLSVFP-PSAHIPTILLSLIWFDVIK 401

Query: 272 GDDMQTQCIINHQALPCLLD-----------LLTQNYKKSIKKEA--------------C 306
            D M    ++N      L++            +    K  ++ E                
Sbjct: 402 SDVMV---VVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKT 458

Query: 307 WTISNITAGNVNQ---------IQAIIEAGIIGPLVNLLLNAEF-EIKKEAAWAISNATS 356
           +   ++    ++Q         ++ I     +     + L+  F E K        NA+ 
Sbjct: 459 FDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASG 518

Query: 357 GGSN--EQIKFLVSQGCIKPLCDLLNCPDP-RIVTVCLEGLENILKAGEAEKNMGNTGGV 413
              N  +Q+KF         +CD  N P   R+V      + + L   + E+N+  +   
Sbjct: 519 SILNTLQQLKFYKPY-----ICD--NDPKYERLV----NAILDFLP--KIEENLICSKYT 565

Query: 414 NLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILE 449
           +L   A+               ++  I+E+A K ++
Sbjct: 566 DLLRIAL-------------MAEDEAIFEEAHKQVQ 588

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score = 63.5 bits (154), Expect = 7e-11
 Identities = 58/339 (17%), Positives = 117/339 (34%), Gaps = 24/339 (7%)

Query: 64  PPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVR 123
           P ++  +++ +   F   L  DD P ++  AA  L   A     +    +    +P+F  
Sbjct: 155 PRVSSAVKAELRQYFRN-LCSDDTPMVRRAAASKLGEFAKVLELDN---VKSEIIPMFSN 210

Query: 124 LLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTL 183
           L S   D VR  AV A  N+A    +          +MP L Q  E     +        
Sbjct: 211 LASDEQDSVRLLAVEACVNIA----QLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKF 266

Query: 184 SNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDG-TNDKIQAVIEAG 242
           +   +     + +     +PA + L+   + EV   A   +    +  + D  + VI + 
Sbjct: 267 TELQKAVGPEITKTD--LVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQ 324

Query: 243 VCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIK 302
           + P + EL+   +  V       +  +          +     +  LL L     K    
Sbjct: 325 ILPCIKELVSDANQHVKSALASVIMGLS-------PILGKDNTIEHLLPLFLAQLKDECP 377

Query: 303 KEACWTISNITA-GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNE 361
           +     ISN+     V  I+ + ++ ++  +V L  +A++ ++      +         E
Sbjct: 378 EVRLNIISNLDCVNEVIGIRQLSQS-LLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVE 436

Query: 362 QIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKA 400
                ++  C+  L D        I       L+ +++ 
Sbjct: 437 FFDEKLNSLCMAWLVD----HVYAIREAATSNLKKLVEK 471

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score = 50.8 bits (121), Expect = 7e-07
 Identities = 42/287 (14%), Positives = 84/287 (29%), Gaps = 22/287 (7%)

Query: 118 VPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLR 177
           + + +  L +    +R  ++  L  +A        +  +   L+P L          +L 
Sbjct: 12  IAVLIDELRNEDVQLRLNSIKKLSTIA----LALGVERTRSELLPFLTDTIYDED-EVLL 66

Query: 178 NATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQA 237
                L  F      P +      LP LE L    +  V   A  +L  +S   +     
Sbjct: 67  ALAEQLGTFTTLVGGPEYVH--CLLPPLESLATVEETVVRDKAVESLRAISHEHSPSD-- 122

Query: 238 VIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNY 297
            +EA   P +  L      +    A               +  +         +L   + 
Sbjct: 123 -LEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAEL----RQYFRNLC-SDD 176

Query: 298 KKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSG 357
              +++ A   +              +++ II    NL  + +  ++  A  A  N    
Sbjct: 177 TPMVRRAAASKLGEFAKVLELD---NVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQL 233

Query: 358 GSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAE 404
              E ++ LV    +  L         R+  +  +    + KA   E
Sbjct: 234 LPQEDLEALV----MPTLRQAAEDKSWRVRYMVADKFTELQKAVGPE 276

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score = 41.5 bits (97), Expect = 6e-04
 Identities = 30/200 (15%), Positives = 60/200 (30%), Gaps = 16/200 (8%)

Query: 32  LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQ 91
           LPA+V         ++L        L         +E +        + +L  D    ++
Sbjct: 404 LPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKL----NSLCMAWLV-DHVYAIR 458

Query: 92  FEAAWALTNIASGTS-ENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 150
             A   L  +      E     I    +P  + +   P    R   ++ +  ++    + 
Sbjct: 459 EAATSNLKKLVEKFGKEWAHATI----IPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQD 514

Query: 151 RDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH 210
                    ++P + +       ++  N   +L            +      P LE+L  
Sbjct: 515 ITTKH----MLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSE--VKPILEKLTQ 568

Query: 211 SNDDEVLTDACWALSYLSDG 230
             D +V   A  AL+ LS  
Sbjct: 569 DQDVDVKYFAQEALTVLSLA 588

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230

 Score = 62.4 bits (150), Expect = 2e-10
 Identities = 40/324 (12%), Positives = 106/324 (32%), Gaps = 14/324 (4%)

Query: 29  LESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERS-PPINEVIQSGVVPRFIEFLSRDDF 87
           +++L   +       R+I           L    S   +   +   +  R    +++ + 
Sbjct: 88  VDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQED 147

Query: 88  PQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDS 147
             +Q EA   + ++ S       V      +   +  L+SP   VR++ + ALG++    
Sbjct: 148 VSVQLEALDIMADMLS-RQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLV--- 203

Query: 148 PKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALER 207
             C ++V  +  +  LL++ +++  +S  R     ++   R     + E     +P + +
Sbjct: 204 MSCGNIVFVD-LIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVK 262

Query: 208 LIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVG 267
             + +DDE+      A          ++   +   +    ++ L +       P      
Sbjct: 263 FCNVDDDELREYCIQAFESFVRRCPKEVYPHVST-IINICLKYLTYD------PNYNYDD 315

Query: 268 NIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAG 327
                + M      +             +    +++ A   +  +     +++       
Sbjct: 316 EDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAV-VSTRHEMLPEFYKT 374

Query: 328 IIGPLVNLLLNAEFEIKKEAAWAI 351
           +   L++     E  +K +   A 
Sbjct: 375 VSPALISRFKEREENVKADVFHAY 398

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230

 Score = 48.2 bits (113), Expect = 5e-06
 Identities = 34/247 (13%), Positives = 80/247 (32%), Gaps = 25/247 (10%)

Query: 67   NEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLS 126
             +   + V     +  +      ++  A  +L  +      + ++ +      + +   S
Sbjct: 811  PKEGPAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHHIDLSGQLELKS----VILEAFS 866

Query: 127  SPTDDVREQAVWALGNVA-GDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSN 185
            SP+++V+  A +ALG+++ G+ P+    VL      P       H+   ++ +A+     
Sbjct: 867  SPSEEVKSAASYALGSISVGNLPEYLPFVLQEITSQPKRQYLLLHSLKEIISSAS----- 921

Query: 186  FCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCP 245
                    L          L +     ++         L         K+  +    + P
Sbjct: 922  -----VVGLKPYVENIWALLLKHCECAEEGTRNVVAECLG--------KLTLIDPETLLP 968

Query: 246  RLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEA 305
            RL   L   S       +  V   ++ D  Q    +    +   L  L      ++++ A
Sbjct: 969  RLKGYLISGSSYARSSVVTAVKFTIS-DHPQPIDPLLKNCIGDFLKTLEDP-DLNVRRVA 1026

Query: 306  CWTISNI 312
              T ++ 
Sbjct: 1027 LVTFNSA 1033

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 58.9 bits (143), Expect = 2e-10
 Identities = 32/219 (14%), Positives = 61/219 (27%), Gaps = 53/219 (24%)

Query: 30  ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSG---------------- 73
           E +   +  +  D   ++  A     K+       P+ + ++                  
Sbjct: 14  EKVEMYIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIG 73

Query: 74  ---VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTD 130
               V   I+ L +D+   ++  AA AL  I            D  AV   ++ L     
Sbjct: 74  DERAVEPLIKAL-KDEDGWVRQSAAVALGQIG-----------DERAVEPLIKALKDEDW 121

Query: 131 DVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK 190
            VR  A +ALG             + +   +  L +  +     + ++A   L       
Sbjct: 122 FVRIAAAFALGE------------IGDERAVEPLIKALKDEDGWVRQSAADALGEI---- 165

Query: 191 PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSD 229
                        A+E+L  +        A   L     
Sbjct: 166 ------GGERVRAAMEKLAETGTGFARKVAVNYLETHKS 198

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 56.6 bits (137), Expect = 2e-09
 Identities = 35/263 (13%), Positives = 72/263 (27%), Gaps = 68/263 (25%)

Query: 135 QAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPL 194
           +      +                 +   +    +     + R A + L           
Sbjct: 2   RGSHHHHHHTDPE-----------KVEMYIKNL-QDDSYYVRRAAAYALGKI-------- 41

Query: 195 FEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP 254
                 A+  L + +   D  V   A  AL  + D      +  +E      L++ L+  
Sbjct: 42  --GDERAVEPLIKALKDEDAWVRRAAADALGQIGD------ERAVEP-----LIKALKDE 88

Query: 255 SPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA 314
              V   A   +G I  GD+         +A+  L+  L       ++  A + +  I  
Sbjct: 89  DGWVRQSAAVALGQI--GDE---------RAVEPLIKALKDED-WFVRIAAAFALGEIGD 136

Query: 315 GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKP 374
                         + PL+  L + +  +++ AA A+              +  +     
Sbjct: 137 -----------ERAVEPLIKALKDEDGWVRQSAADALGE------------IGGERVRAA 173

Query: 375 LCDLLNCPDPRIVTVCLEGLENI 397
           +  L          V +  LE  
Sbjct: 174 MEKLAETGTGFARKVAVNYLETH 196

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778

 Score = 59.0 bits (142), Expect = 2e-09
 Identities = 59/424 (13%), Positives = 139/424 (32%), Gaps = 50/424 (11%)

Query: 6   IDCFVCFSLLKPMDPMFFIIQLQLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPP 65
                  S L P            + L  +      +++++Q       ++LL +  S  
Sbjct: 230 SIIVKTLSELYPSLTTLCSEIFLTKGLSKLFKKRVFEEQDLQFT-----KELLRLLSSAC 284

Query: 66  INEVIQSGVVPRFIEFLSRD-DFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRL 124
           I+E +++ +   +++ L R  +   +Q  +A  L    S T      +       IF+  
Sbjct: 285 IDETMRTYITENYLQLLERSLNVEDVQIYSALVLVKTWSFTKLTCINLKQL--SEIFINA 342

Query: 125 LSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLR-NATWTL 183
           +S       E +V AL  ++      + ++ SN +   +L    +  K++         +
Sbjct: 343 ISRRIVPKVEMSVEALAYLSLK-ASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIM 401

Query: 184 SNFCRGKPQPLFEQTRPALPALERLI-----HSNDDEVLTDACWALSYLSDGTNDKIQAV 238
           +N      +                           E             D      + +
Sbjct: 402 ANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKE--------DILLFNEKYI 453

Query: 239 IEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLT--QN 296
           +   +   L   + + SP+     +R + NI    +   Q +    A+  +L+ L   Q+
Sbjct: 454 LRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQ-LAQQGAVKIILEYLANKQD 512

Query: 297 YKKSIKKEACWTISNITA----GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKK------- 345
             + I+   C  ++ +      G + +  + + A  I  L  LL  +             
Sbjct: 513 IGEPIRILGCRALTRMLIFTNPGLIFKKYSALNA--IPFLFELLPRSTPVDDNPLHNDEQ 570

Query: 346 -------EAAWAISNATSGGSNEQIK----FLVSQGCIKPLCDLLNCPDPRIVTVCLEGL 394
                  EA  A++N  S  +++  +     + ++     + +L+   +  +    LE +
Sbjct: 571 IKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELI 630

Query: 395 ENIL 398
            N++
Sbjct: 631 SNMM 634

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778

 Score = 53.6 bits (128), Expect = 9e-08
 Identities = 58/360 (16%), Positives = 103/360 (28%), Gaps = 77/360 (21%)

Query: 105 TSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLL 164
              N + ++    +    R + + + + ++Q V  + N+          +   GA+  +L
Sbjct: 446 LLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRS-KNFIPQLAQQGAVKIIL 504

Query: 165 AQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWAL 224
                      L N                         AL R++   +  ++       
Sbjct: 505 ---------EYLANKQDIGE-----------PIRILGCRALTRMLIFTNPGLIF------ 538

Query: 225 SYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQ 284
                     + A+      P L ELL   +P    P           +D Q +   N++
Sbjct: 539 -----KKYSALNAI------PFLFELLPRSTPVDDNPLH---------NDEQIKLTDNYE 578

Query: 285 ALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIK 344
           AL  L +L +     S  +E C  I             +        + NL+L+    ++
Sbjct: 579 ALLALTNLASSE--TSDGEEVCKHI-------------VSTKVYWSTIENLMLDENVPLQ 623

Query: 345 KEAAWAISNATSGGSNEQIKFL-----VSQGCIKPLCDLLNCPDPRIVTVCLEGLENILK 399
           +     ISN  S       KF       S      L  LL   D            NI  
Sbjct: 624 RSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIAT 683

Query: 400 AGE--AEKNMGNTGGVN----LFAQAIDDAE----GLEKIENLQSHDNTEIYEKAVKILE 449
                A++ +     +     +FA  IDD E     L     L          +   +L+
Sbjct: 684 TIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEVIPDNGTNEVYPLLQ 743

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852

 Score = 58.3 bits (140), Expect = 3e-09
 Identities = 49/343 (14%), Positives = 94/343 (27%), Gaps = 31/343 (9%)

Query: 66  INEVIQSGVVPRFIEFLSR---DDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFV 122
           +  V +  ++P  +  L          ++      L  IA G  +     +    +P  +
Sbjct: 348 LANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPE-LIPHLI 406

Query: 123 RLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWT 182
           + LS     VR    W L   A               +  LL +  +  K  +   A   
Sbjct: 407 QCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNK-RVQEAACSA 465

Query: 183 LSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAG 242
            +         L       L  L         + L     A+  L         +V    
Sbjct: 466 FATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTL-------ADSVGHHL 518

Query: 243 VCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIK 302
             P  ++        +L+P L    N++  +D           L C L  +    +    
Sbjct: 519 NKPEYIQ--------MLMPPLIQKWNMLKDEDKD-----LFPLLEC-LSSVATALQSGFL 564

Query: 303 KEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQ 362
                         VN +Q  +   ++         A  +     A  + +  + G    
Sbjct: 565 PYCEPVYQRC----VNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGN 620

Query: 363 IKFLVSQGCIKP-LCDLLNCPDPRIVTVCLEGLENILKAGEAE 404
           I+ LV++  I   +   +    P +       L ++ KA    
Sbjct: 621 IEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQH 663

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852

 Score = 49.4 bits (117), Expect = 2e-06
 Identities = 57/464 (12%), Positives = 130/464 (28%), Gaps = 62/464 (13%)

Query: 6   IDCFVCFSLLKPMDPMFFIIQLQLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPP 65
            +      +L  +     +  +    +  M+      D N+ L+A   +  L        
Sbjct: 233 KNVCRALVMLLEVRMDRLLPHMH-NIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKD 291

Query: 66  INEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLL 125
           +       ++P  +  +   D   +               + +                 
Sbjct: 292 VLVRHLPKLIPVLVNGMKYSDI-DIILLKGDVEGGSGGDDTISD---------------- 334

Query: 126 SSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSN 185
                ++R+ +  AL  +A      RD +L    ++PLL +   H +  +  +    L  
Sbjct: 335 ----WNLRKCSAAALDVLAN---VYRDELLP--HILPLLKELLFHHEWVVKESGILVLGA 385

Query: 186 FCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCP 245
              G  Q +       +P L + +      V +  CW LS  +     +        +  
Sbjct: 386 IAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMT 445

Query: 246 RLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINH--QALPCLLDLLTQNYKKSIKK 303
            L++ +   +  V   A      +    +     ++ +    L  L+      Y+     
Sbjct: 446 ELLKRILDSNKRVQEAACSAFATLE---EEACTELVPYLAYILDTLVFAF-SKYQHKNLL 501

Query: 304 EACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQI 363
                I  +     + +       ++ P +    N   +  K+    +   +S  +  Q 
Sbjct: 502 ILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQS 561

Query: 364 KFL-----VSQGCIKPLCDLLN-------------CPDPRIVTVCLEGLENILKAGEAEK 405
            FL     V Q C+  +   L               PD   + V L+ L  + +      
Sbjct: 562 GFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGN- 620

Query: 406 NMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILE 449
                       Q +  +  L  +         E+ + +  +L 
Sbjct: 621 ----------IEQLVARSNILTLMYQCMQDKMPEVRQSSFALLG 654

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} Length = 963

 Score = 56.4 bits (135), Expect = 1e-08
 Identities = 34/179 (18%), Positives = 61/179 (34%), Gaps = 29/179 (16%)

Query: 75  VPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVRE 134
               I  +   D   L++  A+ +    +GT  N+ V        +    +S   DDVR 
Sbjct: 543 ADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVK------RLLHVAVSDSNDDVRR 596

Query: 135 QAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPL 194
            AV ALG V                +  ++   ++     +     + L   C GK    
Sbjct: 597 AAVIALGFVLLRDYT---------TVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQ- 646

Query: 195 FEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH 253
                 A+  L+ L     D V   A  ALS +     +K        + P++ ++ ++
Sbjct: 647 -----SAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEK--------LNPQVADINKN 692

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Length = 651

 Score = 55.1 bits (132), Expect = 3e-08
 Identities = 50/349 (14%), Positives = 103/349 (29%), Gaps = 42/349 (12%)

Query: 54  FRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVI 113
              L+ + ++   +  I    +      +S D+  +++  +     ++ S   + T + I
Sbjct: 62  MEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGS---QFTEIFI 118

Query: 114 -DHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSP-KCRDLVLSNGALMPLLAQFNEHA 171
                V + + LL      VR   V  L ++      + + ++L +   +  L      +
Sbjct: 119 KQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADS 178

Query: 172 KLSMLRNATWTLSNFCRGKP--QPL--FEQTRPALPALERLIH----SNDDEVLTDACWA 223
           +  +  +    L    R     Q +  FE    A   L  +I     S+   V+ D    
Sbjct: 179 REVIRNDGVLLLQALTRSNGAIQKIVAFEN---AFERLLDIITEEGNSDGGIVVEDCLIL 235

Query: 224 LSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSV---------------LIPALRTVGN 268
           L  L    N       E     R+         +                L+  L +  N
Sbjct: 236 LQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNN 295

Query: 269 IVTGDDMQTQCIINHQALPCLLDL-LTQNYKKSIKKEACWTISNITAGN-VNQIQ-AIIE 325
                    + +     L  L  + +       I  E   T+S +  G  VNQ   A + 
Sbjct: 296 PPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVN 355

Query: 326 AGIIGPLVNLLLN--------AEFEIKKEAAWAISNATSGGSNEQIKFL 366
           A    P   +++           F ++    +            Q + +
Sbjct: 356 APSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKNQKGQGEIV 404

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 49.6 bits (119), Expect = 1e-07
 Identities = 20/150 (13%), Positives = 41/150 (27%), Gaps = 35/150 (23%)

Query: 75  VPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVRE 134
           +      +  D+   ++ + + AL+ +               A    +  LS+    +R 
Sbjct: 14  LVPRGSHM-ADENKWVRRDVSTALSRMGDE------------AFEPLLESLSNEDWRIRG 60

Query: 135 QAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPL 194
            A W +GN              +   +  L +  E     +   A  +L           
Sbjct: 61  AAAWIIGN------------FQDERAVEPLIKLLEDDSGFVRSGAARSLEQI-------- 100

Query: 195 FEQTRPALPALERLIHSNDDEVLTDACWAL 224
                    A+E+L  +        A   L
Sbjct: 101 --GGERVRAAMEKLAETGTGFARKVAVNYL 128

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 49.6 bits (119), Expect = 1e-07
 Identities = 22/142 (15%), Positives = 41/142 (28%), Gaps = 34/142 (23%)

Query: 117 AVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSML 176
            +      ++     VR     AL              + + A  PLL     +    + 
Sbjct: 13  GLVPRGSHMADENKWVRRDVSTALSR------------MGDEAFEPLLESL-SNEDWRIR 59

Query: 177 RNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQ 236
             A W + NF          Q   A+  L +L+  +   V + A  +L  +        +
Sbjct: 60  GAAAWIIGNF----------QDERAVEPLIKLLEDDSGFVRSGAARSLEQIGG------E 103

Query: 237 AVIEAGVCPRLVELLRHPSPSV 258
            V  A     + +L    +   
Sbjct: 104 RVRAA-----MEKLAETGTGFA 120

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 47.3 bits (113), Expect = 8e-07
 Identities = 16/78 (20%), Positives = 30/78 (38%), Gaps = 12/78 (15%)

Query: 70  IQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPT 129
           +        +E L  ++  +++  AAW + N             D  AV   ++LL   +
Sbjct: 39  MGDEAFEPLLESL-SNEDWRIRGAAAWIIGNFQ-----------DERAVEPLIKLLEDDS 86

Query: 130 DDVREQAVWALGNVAGDS 147
             VR  A  +L  + G+ 
Sbjct: 87  GFVRSGAARSLEQIGGER 104

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 45.8 bits (109), Expect = 2e-06
 Identities = 15/68 (22%), Positives = 22/68 (32%), Gaps = 12/68 (17%)

Query: 74  VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVR 133
            V   I+ L  DD   ++  AA +L  I                     +L  + T   R
Sbjct: 74  AVEPLIKLL-EDDSGFVRSGAARSLEQIG-----------GERVRAAMEKLAETGTGFAR 121

Query: 134 EQAVWALG 141
           + AV  L 
Sbjct: 122 KVAVNYLE 129

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 45.0 bits (107), Expect = 4e-06
 Identities = 25/153 (16%), Positives = 47/153 (30%), Gaps = 35/153 (22%)

Query: 199 RPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSV 258
              L      +   +  V  D   ALS + D      +A         L+E L +    +
Sbjct: 11  SSGLVPRGSHMADENKWVRRDVSTALSRMGD------EAF------EPLLESLSNEDWRI 58

Query: 259 LIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVN 318
              A   +GN    D+         +A+  L+ LL ++    ++  A  ++  I  G   
Sbjct: 59  RGAAAWIIGNF--QDE---------RAVEPLIKLL-EDDSGFVRSGAARSLEQI--GG-- 102

Query: 319 QIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAI 351
                    +   +  L        +K A   +
Sbjct: 103 -------ERVRAAMEKLAETGTGFARKVAVNYL 128

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861

 Score = 52.5 bits (125), Expect = 3e-07
 Identities = 55/350 (15%), Positives = 122/350 (34%), Gaps = 45/350 (12%)

Query: 66  INEVIQSGVVPRFIEFLS---RDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFV 122
             +   + ++   +EF+      D  + +  A  A  +I  G  +  R    H A+P  +
Sbjct: 358 FAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSIL 417

Query: 123 RLLSSPTDDVREQAVWALGNVAGD-SPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATW 181
            L++  +  V+E   W +G +A   +          G +   L    +H K++   N +W
Sbjct: 418 NLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDHPKVA--TNCSW 475

Query: 182 TLSNFCRGKPQPLFEQTRPALPA-LERLIHS-----NDDEVLTDACWALSYLSDGTNDKI 235
           T+ N      +          PA ++ LI +     N+      A  AL+ + +   D +
Sbjct: 476 TIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTV 535

Query: 236 QAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQ 295
                + +   +++         L   +    N +T +D Q+   +    L  L      
Sbjct: 536 AETSAS-ISTFVMD--------KLGQTMSVDENQLTLEDAQSLQELQSNILTVL------ 580

Query: 296 NYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAW-AISNA 354
                         + +   + + ++ + +  ++G    LL   +    ++  + AIS  
Sbjct: 581 --------------AAVIRKSPSSVEPVADM-LMGLFFRLLEKKDSAFIEDDVFYAISAL 625

Query: 355 TSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAE 404
            +       K+L  +     L   LN  D  +    +  + +I  + E +
Sbjct: 626 AASLGKGFEKYL--ETFSPYLLKALNQVDSPVSITAVGFIADISNSLEED 673

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861

 Score = 42.1 bits (98), Expect = 4e-04
 Identities = 50/343 (14%), Positives = 107/343 (31%), Gaps = 24/343 (6%)

Query: 79  IEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGA---VPIFVRLLSSPTD-DVRE 134
           ++    +    ++  +  AL  +       ++ ++       + I     S+ T   VR 
Sbjct: 140 VDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRL 199

Query: 135 QAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPL 194
            A+ AL +         +       LM ++ +  +   + +   A   L          +
Sbjct: 200 AALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFM 259

Query: 195 FEQTRPALPALE-RLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH 253
                 AL AL    + S +D+V +      S + +   D    + +    P        
Sbjct: 260 KPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFAL 319

Query: 254 PSPSVLIPALR---TVGNIVTGDDMQTQCIINHQAL------------PCLLDLLTQNYK 298
            S   ++P L    T  N    DD     +     L              +L+ + QN  
Sbjct: 320 SSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNIT 379

Query: 299 KS---IKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNAT 355
                 ++ A     +I  G     +       +  ++NL+ +   ++K+  AW I    
Sbjct: 380 ADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIA 439

Query: 356 SGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENIL 398
              +          G ++     L    P++ T C   + N++
Sbjct: 440 DSVAESIDPQQHLPGVVQACLIGLQ-DHPKVATNCSWTIINLV 481

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} Length = 265

 Score = 47.1 bits (111), Expect = 4e-06
 Identities = 35/229 (15%), Positives = 73/229 (31%), Gaps = 25/229 (10%)

Query: 193 PLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR 252
            L  + + AL  +  L   +D+     A  AL  +    +  ++ ++        +  L 
Sbjct: 26  SLALEDKRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALS 85

Query: 253 HPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCL---------------LDLLTQNY 297
             +  V I ALR +G +V    M ++  +  +A   L               +D+L++  
Sbjct: 86  QENEKVTIKALRALGYLVKDVPMGSKTFL--KAAKTLVSLLESPDDMMRIETIDVLSKLQ 143

Query: 298 KKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSG 357
                K     I+ +        +    AG    L  L  +A+          I +    
Sbjct: 144 PLEDSKLVRTYINELVVSPDLYTKV---AGFCLFLNMLNSSADSGHLTLILDEIPSLLQN 200

Query: 358 GSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKN 406
            +       + +  +  L   L+ P    V + L  +  I+      + 
Sbjct: 201 DN-----EFIVELALDVLEKALSFPLLENVKIELLKISRIVDGLVYREG 244

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876

 Score = 43.3 bits (101), Expect = 2e-04
 Identities = 36/250 (14%), Positives = 83/250 (33%), Gaps = 14/250 (5%)

Query: 66  INEVIQSGVVPRFIEFLS---RDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFV 122
           +    +  +VP  + F+    ++   + +  A  A   I  G   +    +   A+P  +
Sbjct: 355 LATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLI 414

Query: 123 RLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEH--AKLSMLRNAT 180
            L+  P+  VR+ A W +G +        +  +++  L PLL    E   A+  +  N  
Sbjct: 415 ELMKDPSVVVRDTAAWTVGRICEL---LPEAAINDVYLAPLLQCLIEGLSAEPRVASNVC 471

Query: 181 WTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIE 240
           W  S+      +   +            + S+ + ++              N+   +  E
Sbjct: 472 WAFSSLAEAAYEA-ADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYE 530

Query: 241 A-----GVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQ 295
           +         +        +  V++  L+ V  + +     +  I  +     L   L  
Sbjct: 531 SLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQN 590

Query: 296 NYKKSIKKEA 305
             +K   ++A
Sbjct: 591 VLRKVQHQDA 600

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	488
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	100.0
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	100.0
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	100.0
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	100.0
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	100.0
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	100.0
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	100.0
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	100.0
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	100.0
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	100.0
3nmz_A	458	APC variant protein; protein-protein complex, arma	100.0
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	100.0
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	100.0
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	100.0
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	100.0
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	100.0
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	100.0
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	100.0
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	100.0
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	100.0
3nmz_A	458	APC variant protein; protein-protein complex, arma	100.0
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	100.0
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	100.0
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	100.0
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	99.97
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	99.96
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.95
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.95
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.95
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.94
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.93
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.92
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.91
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.9
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.9
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.88
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.83
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.82
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	99.81
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	99.8
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	99.79
3grl_A	651	General vesicular transport factor P115; vesicle t	99.78
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	99.78
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	99.76
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	99.71
3grl_A	651	General vesicular transport factor P115; vesicle t	99.7
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.68
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	99.67
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.66
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	99.66
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	99.65
1qgr_A	876	Protein (importin beta subunit); transport recepto	99.64
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	99.63
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	99.61
1qgr_A	876	Protein (importin beta subunit); transport recepto	99.61
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	99.6
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	99.58
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	99.56
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.45
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	99.44
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	99.43
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.43
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	99.39
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	99.34
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	99.13
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	99.12
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	99.11
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	99.03
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	99.0
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	98.96
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	98.9
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	98.88
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	98.88
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	98.87
1ho8_A	480	Vacuolar ATP synthase subunit H; heat repeat, hydr	98.87
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	98.84
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	98.77
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	98.73
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	98.73
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	98.61
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	98.59
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	98.55
2x1g_F	971	Cadmus; transport protein, developmental protein,	98.53
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	98.5
1ho8_A	480	Vacuolar ATP synthase subunit H; heat repeat, hydr	98.5
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	98.43
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	98.35
2x19_B	963	Importin-13; nuclear transport, protein transport;	98.26
2x1g_F	971	Cadmus; transport protein, developmental protein,	98.22
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	98.22
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	98.19
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	98.17
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	98.13
2x19_B	963	Importin-13; nuclear transport, protein transport;	98.07
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	98.04
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	97.98
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	97.91
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	97.79
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	97.71
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	97.49
3gjx_A	1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	97.47
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	97.41
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	97.39
1upk_A	341	MO25 protein; transferase, armadillo; HET: MSE; 1.	97.34
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	97.34
1upk_A	341	MO25 protein; transferase, armadillo; HET: MSE; 1.	97.29
3gjx_A	1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	97.27
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	97.25
2fv2_A	268	RCD1 required for cell differentiation1 homolog; a	97.2
3c2g_A	619	SYS-1 protein; beta-catenin, phylogeny, SYS-1, dev	96.97
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	96.93
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	96.92
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	96.87
2fv2_A	268	RCD1 required for cell differentiation1 homolog; a	96.85
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	96.78
3l9t_A	240	Putative uncharacterized protein SMU.31; hypotheti	96.34
2f31_A	233	Diaphanous protein homolog 1; formin,MDIA1, protei	96.24
3l9t_A	240	Putative uncharacterized protein SMU.31; hypotheti	96.22
3a6p_A	1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	96.07
3c2g_A	619	SYS-1 protein; beta-catenin, phylogeny, SYS-1, dev	95.96
2f31_A	233	Diaphanous protein homolog 1; formin,MDIA1, protei	95.6
3a6p_A	1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	95.43
3eg5_B	383	Protein diaphanous homolog 1; protein-protein comp	95.42
1lsh_A	1056	Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro	95.38
3ebb_A	304	Phospholipase A2-activating protein; armadillo rep	95.33
3ebb_A	304	Phospholipase A2-activating protein; armadillo rep	95.2
3eg5_B	383	Protein diaphanous homolog 1; protein-protein comp	95.19
1lsh_A	1056	Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro	94.39
2bnx_A	386	Diaphanous protein homolog 1; autoinhibition, acti	94.23
2bnx_A	386	Diaphanous protein homolog 1; autoinhibition, acti	93.7
3o2t_A	386	Symplekin; heat repeat, scaffold, protein binding;	93.35
1vdy_A	140	Hypothetical protein (RAFL09-17-B18); structural g	92.88
3o2t_A	386	Symplekin; heat repeat, scaffold, protein binding;	92.24
1x5b_A	163	Signal transducing adaptor molecule 2; VHS domain,	91.93
3qml_C	315	Protein SLS1, nucleotide exchange factor SIL1; arm	91.47
3qml_C	315	Protein SLS1, nucleotide exchange factor SIL1; arm	91.42
3gs3_A	257	Symplekin, LD45768P; helix-turn-helix heat repeat	91.28
3fga_B	403	Serine/threonine-protein phosphatase 2A 56 kDa RE	89.38
3ldz_A	140	STAM-1, signal transducing adapter molecule 1; ubi	88.4
3g2s_A	149	C-terminal fragment of sortilin-related receptor;	87.77
1x5b_A	163	Signal transducing adaptor molecule 2; VHS domain,	86.45
1mhq_A	148	ADP-ribosylation factor binding protein GGA2; supe	86.26
3ldz_A	140	STAM-1, signal transducing adapter molecule 1; ubi	85.33
1mhq_A	148	ADP-ribosylation factor binding protein GGA2; supe	84.95
1juq_A	171	ADP-ribosylation factor binding protein GGA3; prot	84.83
2npp_B	449	PP2A, B subunit, serine/threonine-protein phosphat	84.28
3g2s_A	149	C-terminal fragment of sortilin-related receptor;	83.71
1juq_A	171	ADP-ribosylation factor binding protein GGA3; prot	82.23
2npp_B	449	PP2A, B subunit, serine/threonine-protein phosphat	81.63
3zyq_A	226	Hepatocyte growth factor-regulated tyrosine kinas	81.18
1vsy_5	997	Proteasome activator BLM10; 20S proteasome BLM10,	80.52

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=100.00  E-value=5.5e-58  Score=457.45  Aligned_cols=446  Identities=48%  Similarity=0.825  Sum_probs=388.3

Q ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhH
Q 011328           31 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR  110 (488)
Q Consensus        31 ~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~  110 (488)
                      .++.+++.++|+|++.|+.|+..++++++.+++++++.+++.|++|.|+++|++++++.+|..|+|+|+|++.++++.+.
T Consensus        58 ~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~  137 (510)
T 3ul1_B           58 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTK  137 (510)
T ss_dssp             CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred             hHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence            48899999999999999999999999999988888999999999999999998776689999999999999998999999


Q ss_pred             HHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccc----cHhHHHHHHHHHHHh
Q 011328          111 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHA----KLSMLRNATWTLSNF  186 (488)
Q Consensus       111 ~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~----~~~v~~~a~~~L~~l  186 (488)
                      .+++.|++|.|+++|+++++++++.|+|+|+||+.+++.++..+.+.|++++++.++....    ...+++.++|+++++
T Consensus       138 ~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl  217 (510)
T 3ul1_B          138 AVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNL  217 (510)
T ss_dssp             HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999995322    245788999999999


Q ss_pred             hcCC-CCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHH
Q 011328          187 CRGK-PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT  265 (488)
Q Consensus       187 ~~~~-~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~  265 (488)
                      +.+. +........+++|.|++++.+++++++..++++|.+++....+..+.+.+.|+++.|+.++.++++.++..++++
T Consensus       218 ~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~a  297 (510)
T 3ul1_B          218 CRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA  297 (510)
T ss_dssp             HCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHH
T ss_pred             hhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHH
Confidence            9987 555666678999999999999999999999999999999888888888899999999999999999999999999


Q ss_pred             HhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHH
Q 011328          266 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKK  345 (488)
Q Consensus       266 L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~  345 (488)
                      |++++.+++.....+++.|+++.|+.+|.++ +..+++.|+|+|+|++.++++.++.+.+.|+++.|+.++.+++.+++.
T Consensus       298 L~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~-~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~  376 (510)
T 3ul1_B          298 IGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQK  376 (510)
T ss_dssp             HHHHTTSCHHHHHHHHHTTGGGGCC-CTTCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHH
T ss_pred             HHHhhcCCHHHHHHHhhccchHHHHHHhcCC-CHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHH
Confidence            9999999988888999999999999999998 899999999999999999899999999999999999999999999999


Q ss_pred             HHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhcc
Q 011328          346 EAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEG  425 (488)
Q Consensus       346 ~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~  425 (488)
                      .|+|+|.|++..++.++..++.+.|+++.|+++|+.+|++++..++++|.+++..+++..      ..+.+...++++||
T Consensus       377 ~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~------~~~~~~~~iee~gg  450 (510)
T 3ul1_B          377 EAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLG------ETEKLSIMIEECGG  450 (510)
T ss_dssp             HHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTT------CHHHHHHHHHHTTH
T ss_pred             HHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhcc------chHHHHHHHHHcCc
Confidence            999999999998889999999999999999999999999999999999999998876432      34568899999999


Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCCCC--CCCCCCCCCccccCCCCCCCCCCCCcC
Q 011328          426 LEKIENLQSHDNTEIYEKAVKILETYWVEEDEDEP--LPPGDATQAGFGFAGNGLPVPSGGFNF  487 (488)
Q Consensus       426 ~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  487 (488)
                      +++|+.|++++|++|+++|..++++||+.|+|+|+  .|+..  +.+|.|+.+.  .|||+|||
T Consensus       451 l~~ie~Lq~~~n~~i~~~A~~iie~yf~~~~~~~~~~~~~~~--~~~~~~~~~~--~~~~~~~~  510 (510)
T 3ul1_B          451 LDKIEALQRHENESVYKASLNLIEKYFSVEEEEDQNVVPETT--SEGFAFQVQD--GAPGTFNF  510 (510)
T ss_dssp             HHHHHHGGGCSSHHHHHHHHHHHHHHCC------------------------------------
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHCCCccccccccCCCCC--ccccccCCCC--CCCCCCCC
Confidence            99999999999999999999999999998776665  56543  4568887553  38899998

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=100.00  E-value=8.5e-57  Score=451.53  Aligned_cols=447  Identities=47%  Similarity=0.813  Sum_probs=388.5

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh
Q 011328           30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT  109 (488)
Q Consensus        30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~  109 (488)
                      ..++.+++.+.|+|++.+..|+..++++++.+++++.+.+++.|++|.|+++|+.++++.++..|+|+|++++.++++.+
T Consensus        76 ~~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~  155 (529)
T 3tpo_A           76 WSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT  155 (529)
T ss_dssp             CCHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence            46899999999999999999999999999988788899999999999999999877668999999999999999899999


Q ss_pred             HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccc----cHhHHHHHHHHHHH
Q 011328          110 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHA----KLSMLRNATWTLSN  185 (488)
Q Consensus       110 ~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~----~~~v~~~a~~~L~~  185 (488)
                      ..+++.|+++.|+.+|.++++++++.|+|+|+||+.+++.++..+.+.|++++++.++....    ...+++.++|++++
T Consensus       156 ~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~n  235 (529)
T 3tpo_A          156 KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSN  235 (529)
T ss_dssp             HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999995322    24578899999999


Q ss_pred             hhcCC-CCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHH
Q 011328          186 FCRGK-PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALR  264 (488)
Q Consensus       186 l~~~~-~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~  264 (488)
                      ++.+. +........+++|.|+.++.++++.++..++++|.+++....+..+.+.+.|+++.|+.+|.++++.++..++.
T Consensus       236 l~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~  315 (529)
T 3tpo_A          236 LCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALR  315 (529)
T ss_dssp             HHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHH
T ss_pred             HHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHH
Confidence            99987 55566677899999999999999999999999999999988888888889999999999999999999999999


Q ss_pred             HHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHH
Q 011328          265 TVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIK  344 (488)
Q Consensus       265 ~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~  344 (488)
                      +|++++.+++.....+++.|+++.|+.+|.++ +..+++.|+|+|+|++.+++.....+++.|+++.|+.++.+++.+++
T Consensus       316 aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~-~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~  394 (529)
T 3tpo_A          316 AIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQ  394 (529)
T ss_dssp             HHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCS-SHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHH
T ss_pred             HHHHHHccchHHHHHHhhcccHHHHHHHHcCC-CHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHH
Confidence            99999999988888999999999999999998 89999999999999999989999999999999999999999999999


Q ss_pred             HHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhc
Q 011328          345 KEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAE  424 (488)
Q Consensus       345 ~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g  424 (488)
                      ..|+|+|+|++..+++++..++.+.|+++.|+++|+.+|++++..++++|.+++..++...      ..+.+...++++|
T Consensus       395 ~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~------~~~~~~~~iee~g  468 (529)
T 3tpo_A          395 KAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLG------ETEKLSIMIEECG  468 (529)
T ss_dssp             HHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTT------CHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhcc------ChHHHHHHHHHCC
Confidence            9999999999998889999999999999999999999999999999999999998876432      3455888999999


Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCCCC--CCCCCCCCCccccCCCCCCCCCCCCcC
Q 011328          425 GLEKIENLQSHDNTEIYEKAVKILETYWVEEDEDEP--LPPGDATQAGFGFAGNGLPVPSGGFNF  487 (488)
Q Consensus       425 ~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  487 (488)
                      |+++|+.|++|+|++|+++|..++++||+.|+++|+  +|+..  +.+|.|+++.  .+||||||
T Consensus       469 gl~~ie~Lq~~~n~~i~~~A~~iie~yf~~~~~~~~~~~~~~~--~~~~~~~~~~--~~~~~f~f  529 (529)
T 3tpo_A          469 GLDKIEALQRHENESVYKASLNLIEKYFSVEEEEDQNVVPETT--SEGFAFQVQD--GAPGTFNF  529 (529)
T ss_dssp             CHHHHTGGGGCSSHHHHHHHHHHHHHHC-------------------------------------
T ss_pred             cHHHHHHHHcCCCHHHHHHHHHHHHHHCCCccccccccCCCCC--CcccccCCCC--CCCCCCCC
Confidence            999999999999999999999999999998766655  56544  4468888653  37899998

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=100.00  E-value=8.9e-49  Score=394.82  Aligned_cols=443  Identities=84%  Similarity=1.294  Sum_probs=391.2

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh
Q 011328           30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT  109 (488)
Q Consensus        30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~  109 (488)
                      ..+|.+++.|.++++.++..|++.|.++++....+....++..|+++.|+++|.+++++.++..|+++|++++.++++.+
T Consensus        74 ~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~  153 (528)
T 4b8j_A           74 ESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENT  153 (528)
T ss_dssp             -CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence            56999999999999999999999999998877557788999999999999999987658999999999999999889999


Q ss_pred             HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcC
Q 011328          110 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG  189 (488)
Q Consensus       110 ~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~  189 (488)
                      ..+++.|+++.|+.+|.++++.++..|+++|++++.+.+.++..+.+.|+++.|+.++..+.+..++..++|+|.+++..
T Consensus       154 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~  233 (528)
T 4b8j_A          154 KVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRG  233 (528)
T ss_dssp             HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCS
T ss_pred             HHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC
Confidence            99999999999999999999999999999999999998888999999999999999997778899999999999999998


Q ss_pred             CCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHh
Q 011328          190 KPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNI  269 (488)
Q Consensus       190 ~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l  269 (488)
                      .+........++++.++.++.++++.++..++++|++++...+...+.+++.|+++.|+.+|.++++.++..|+++|+++
T Consensus       234 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl  313 (528)
T 4b8j_A          234 KPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNI  313 (528)
T ss_dssp             SSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHH
Confidence            76777777899999999999999999999999999999988887778889999999999999999999999999999999


Q ss_pred             hcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHH
Q 011328          270 VTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAW  349 (488)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~  349 (488)
                      +.+++.....+++.++++.|+.+|.++.++.++..|+|+|+|++.++++....+++.|+++.|+.++.++++.++..|++
T Consensus       314 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~  393 (528)
T 4b8j_A          314 VTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAW  393 (528)
T ss_dssp             TTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHH
Confidence            99888888888999999999999987757899999999999999988888999999999999999999999999999999


Q ss_pred             HHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHH
Q 011328          350 AISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKI  429 (488)
Q Consensus       350 aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L  429 (488)
                      +|++++..++++...++.+.|+++.|+.++..++++++..++++|.+++...+....... ...+.+...+.+.|+++.|
T Consensus       394 aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~l  472 (528)
T 4b8j_A          394 AISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAA-GDVNVFSQMIDEAEGLEKI  472 (528)
T ss_dssp             HHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHT-CSCCHHHHHHHHTTHHHHH
T ss_pred             HHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhccc-ccccHHHHHHHHCCcHHHH
Confidence            999999887789999999999999999999999999999999999999988765332111 1345689999999999999


Q ss_pred             HHhhcCCCHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcccc
Q 011328          430 ENLQSHDNTEIYEKAVKILETYWVEEDEDEPLPPGDATQAGFGF  473 (488)
Q Consensus       430 ~~l~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  473 (488)
                      ..++++++++++++|..++++||+.++++|-.|.++..+.+|.|
T Consensus       473 ~~L~~~~~~~v~~~a~~il~~~~~~e~~~~~~~~~~~~~~~~~~  516 (528)
T 4b8j_A          473 ENLQSHDNNEIYEKAVKILEAYWMDEEDDTMGATTVAAPQGATF  516 (528)
T ss_dssp             HHGGGCSSHHHHHHHHHHHHHHCC--------------------
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHCCCcccccccccCCCcccccee
Confidence            99999999999999999999999987776655555555555544

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=100.00  E-value=5e-46  Score=374.67  Aligned_cols=426  Identities=58%  Similarity=0.894  Sum_probs=387.4

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh
Q 011328           30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT  109 (488)
Q Consensus        30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~  109 (488)
                      +.++.+++.|+++++.++..|++.|.++++..+.+....+++.|+++.|+++|.+++++.++..|+++|++++.++++.+
T Consensus        87 ~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~  166 (530)
T 1wa5_B           87 QELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQT  166 (530)
T ss_dssp             CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence            67999999999999999999999999998876456678888999999999999997338999999999999999888899


Q ss_pred             HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcC
Q 011328          110 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG  189 (488)
Q Consensus       110 ~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~  189 (488)
                      ..+++.|+++.|+.+|.++++.++..|+++|++++.+.+..+..+...|+++.|+.++ .+.+..++..++|+|.+++.+
T Consensus       167 ~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll-~~~~~~v~~~a~~~L~~L~~~  245 (530)
T 1wa5_B          167 KVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLF-NSNKPSLIRTATWTLSNLCRG  245 (530)
T ss_dssp             HHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGG-GSCCHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHh-ccCCHHHHHHHHHHHHHHhCC
Confidence            9999999999999999999999999999999999999888889999999999999999 558889999999999999988


Q ss_pred             C-CCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhH
Q 011328          190 K-PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN  268 (488)
Q Consensus       190 ~-~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~  268 (488)
                      . +........++++.++.++.++++.++..++++|.+++...++..+.+++.++++.|+.++.++++.++..|+++|++
T Consensus       246 ~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~  325 (530)
T 1wa5_B          246 KKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGN  325 (530)
T ss_dssp             SSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred             CCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHH
Confidence            7 666677778999999999999999999999999999998877777888888999999999999999999999999999


Q ss_pred             hhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHH
Q 011328          269 IVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAA  348 (488)
Q Consensus       269 l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~  348 (488)
                      ++.+++...+.+++.++++.|+.+|.++ ++.++..|+|+|+|++.++++..+.+++.|+++.|+.++.++++.++..|+
T Consensus       326 l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~  404 (530)
T 1wa5_B          326 IVTGNDLQTQVVINAGVLPALRLLLSSP-KENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEAC  404 (530)
T ss_dssp             HTTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHcchHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHH
Confidence            9998888888888899999999999999 899999999999999998888888999999999999999999999999999


Q ss_pred             HHHHHhccCCCH--HHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccH
Q 011328          349 WAISNATSGGSN--EQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGL  426 (488)
Q Consensus       349 ~aL~~l~~~~~~--~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~  426 (488)
                      ++|++++..+++  +....+.+.|+++.|+.++++++++++..++++|.+++...+..... .....+.+...+.+.|++
T Consensus       405 ~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~-~~~~~~~~~~~l~~~g~~  483 (530)
T 1wa5_B          405 WAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEA-RGLNINENADFIEKAGGM  483 (530)
T ss_dssp             HHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHH-HTCSSCHHHHHHHHTTHH
T ss_pred             HHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhc-ccccccHHHHHHHHcCcH
Confidence            999999987666  78888999999999999999999999999999999999877653210 001235588999999999


Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCC
Q 011328          427 EKIENLQSHDNTEIYEKAVKILETYWVEEDED  458 (488)
Q Consensus       427 ~~L~~l~~~~~~~v~~~a~~~l~~~~~~~~~~  458 (488)
                      +.|..++++++++++++|..++++||+.++++
T Consensus       484 ~~L~~L~~~~~~~v~~~a~~il~~~~~~~~~~  515 (530)
T 1wa5_B          484 EKIFNCQQNENDKIYEKAYKIIETYFGEEEDA  515 (530)
T ss_dssp             HHHHGGGGCSCHHHHHHHHHHHHHHSSSCC--
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHCCccccc
Confidence            99999999999999999999999999987764

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=100.00  E-value=1.8e-44  Score=356.61  Aligned_cols=426  Identities=61%  Similarity=0.959  Sum_probs=380.5

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHc-CCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhH
Q 011328           32 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQS-GVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR  110 (488)
Q Consensus        32 i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~-~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~  110 (488)
                      ++.+++.|+++++.++..|+..|.++++....+..+.++.. |+++.|+++|++++++.++..|+++|.+++..+++...
T Consensus        22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~  101 (450)
T 2jdq_A           22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTR  101 (450)
T ss_dssp             CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence            78899999999999999999999998874434556777777 99999999999983399999999999999998888888


Q ss_pred             HHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCC
Q 011328          111 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK  190 (488)
Q Consensus       111 ~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~  190 (488)
                      .+++.|+++.|+++++++++.++..|+++|++++.+.+..+..+.+.|+++.++.++..+.+..++..++|+|.+++...
T Consensus       102 ~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~  181 (450)
T 2jdq_A          102 IVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGK  181 (450)
T ss_dssp             HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCS
T ss_pred             HHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCC
Confidence            88899999999999999999999999999999999988888889999999999999954578999999999999999876


Q ss_pred             -CCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHh
Q 011328          191 -PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNI  269 (488)
Q Consensus       191 -~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l  269 (488)
                       +........+++|.++.++.++++.++..++++|.+++...++....+.+.++++.|+.++.++++.++..|+++|+++
T Consensus       182 ~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l  261 (450)
T 2jdq_A          182 SPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNI  261 (450)
T ss_dssp             SSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHH
Confidence             5555555689999999999999999999999999999988777777788889999999999999999999999999999


Q ss_pred             hcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHH
Q 011328          270 VTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAW  349 (488)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~  349 (488)
                      +.+.+...+.+++.++++.++.++.++ ++.+|..|+++|+|++.++++..+.+++.|+++.|+.++.+++++++..|++
T Consensus       262 ~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~  340 (450)
T 2jdq_A          262 VTGDDIQTQVILNCSALQSLLHLLSSP-KESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAW  340 (450)
T ss_dssp             TTSCHHHHHHHHTTTHHHHHHHHTTCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHH
T ss_pred             hhCChHHHHHHHHCccHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHH
Confidence            998887777788889999999999998 8999999999999999988888888999999999999999999999999999


Q ss_pred             HHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHH
Q 011328          350 AISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKI  429 (488)
Q Consensus       350 aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L  429 (488)
                      +|++++...+++....+.+.|+++.|++++++++++++..++++|.+++...+..... +....+++...+.+.|+++.|
T Consensus       341 ~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~-~~~~~~~~~~~l~~~g~~~~l  419 (450)
T 2jdq_A          341 AITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKR-NGTGINPYCALIEEAYGLDKI  419 (450)
T ss_dssp             HHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHH-SCSCCCHHHHHHHHHHCHHHH
T ss_pred             HHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhc-cccchhHHHHHHHHcCcHHHH
Confidence            9999998767788888889999999999999999999999999999999876643221 011235689999999999999


Q ss_pred             HHhhcCCCHHHHHHHHHHHHHhcCCCCCCC
Q 011328          430 ENLQSHDNTEIYEKAVKILETYWVEEDEDE  459 (488)
Q Consensus       430 ~~l~~~~~~~v~~~a~~~l~~~~~~~~~~~  459 (488)
                      ..++++++.++++.|..++++||+.|+++|
T Consensus       420 ~~l~~~~~~~v~~~a~~~l~~~~~~~~~~~  449 (450)
T 2jdq_A          420 EFLQSHENQEIYQKAFDLIEHYFGTEDEDS  449 (450)
T ss_dssp             HHHHCHHHHHHHHHHHHHHHHHHCCC----
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHCCcccccC
Confidence            999999999999999999999998877654

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=100.00  E-value=4.7e-40  Score=328.06  Aligned_cols=378  Identities=26%  Similarity=0.404  Sum_probs=335.0

Q ss_pred             CCCCChhhHHHHhhhccHHHHHHHhcC-CCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHH
Q 011328           15 LKPMDPMFFIIQLQLESLPAMVAGVWS-DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFE   93 (488)
Q Consensus        15 ~~~~~~~~~~~~~~~~~i~~l~~~L~s-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~   93 (488)
                      ..|++.+++.     |.+|.|+++|++ +++.+|..|+++|.+++++. .+..+.+++.|++|.|+++|++++ ++++..
T Consensus        90 ~ppi~~ii~~-----G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~-~e~~~~vv~~GaIp~Lv~lL~s~~-~~v~e~  162 (510)
T 3ul1_B           90 QPPIDNIIRA-----GLIPKFVSFLGKTDCSPIQFESAWALTNIASGT-SEQTKAVVDGGAIPAFISLLASPH-AHISEQ  162 (510)
T ss_dssp             CCCHHHHHHT-----THHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHH
T ss_pred             CchHHHHHHC-----CCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCC-HHHHHHHHHCCCHHHHHHHHcCCC-HHHHHH
Confidence            4567778888     999999999985 66899999999999998876 677888999999999999999999 999999


Q ss_pred             HHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCC-----HHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhc
Q 011328           94 AAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPT-----DDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN  168 (488)
Q Consensus        94 a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~-----~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~  168 (488)
                      |+++|++++.++++.|..+.+.|+++.|+.++...+     ..+...+++++.+++.+...........++++.|+.++ 
T Consensus       163 A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL-  241 (510)
T 3ul1_B          163 AVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL-  241 (510)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHT-
T ss_pred             HHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHH-
Confidence            999999999988999999999999999999998743     45788999999999987655445555567889999999 


Q ss_pred             ccccHhHHHHHHHHHHHhhcCCCC-CChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHH
Q 011328          169 EHAKLSMLRNATWTLSNFCRGKPQ-PLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRL  247 (488)
Q Consensus       169 ~~~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L  247 (488)
                      .+.++.++..++|+|.+++..... .......++++.|+.++.+++..++..++++|++++..++.....+++.|+++.|
T Consensus       242 ~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L  321 (510)
T 3ul1_B          242 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVF  321 (510)
T ss_dssp             TCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGC
T ss_pred             hcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHH
Confidence            788899999999999999987632 2334557899999999999999999999999999999888888889999999999


Q ss_pred             HHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhc-CCHHHHHHHHHc
Q 011328          248 VELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA-GNVNQIQAIIEA  326 (488)
Q Consensus       248 ~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~  326 (488)
                      +.+|.++++.++..|+++|+|++.+++.....+.+.|+++.|+.++.++ +..+|++|+|+|+|++. ++.+.+..+++.
T Consensus       322 ~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~  400 (510)
T 3ul1_B          322 PSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA-DFKTQKEAAWAITNYTSGGTVEQIVYLVHC  400 (510)
T ss_dssp             C-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHCCHHHHHHHHHT
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHccCCHHHHHHHHHC
Confidence            9999999999999999999999999998899999999999999999999 99999999999999998 678888999999


Q ss_pred             CChHHHHHHHhcCChhHHHHHHHHHHHhccC-----CCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhh
Q 011328          327 GIIGPLVNLLLNAEFEIKKEAAWAISNATSG-----GSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAG  401 (488)
Q Consensus       327 ~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~-----~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~  401 (488)
                      |+++.|+++|.+++++++..++++|.|+...     ........+.+.|+++.|..+..+++.++.+.|...|.+.+..+
T Consensus       401 g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~~~  480 (510)
T 3ul1_B          401 GIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSVE  480 (510)
T ss_dssp             TCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC--
T ss_pred             CCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc
Confidence            9999999999999999999999999999742     22344556778899999999999999999999999998887543

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=100.00  E-value=2.3e-39  Score=324.98  Aligned_cols=377  Identities=26%  Similarity=0.404  Sum_probs=333.7

Q ss_pred             CCCChhhHHHHhhhccHHHHHHHhcC-CCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHH
Q 011328           16 KPMDPMFFIIQLQLESLPAMVAGVWS-DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEA   94 (488)
Q Consensus        16 ~~~~~~~~~~~~~~~~i~~l~~~L~s-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a   94 (488)
                      .|++.+++.     |.+|.|+++|++ +++.++..|+++|.+++++. .+....+++.|++|.|+.+|.+++ ++++..|
T Consensus       110 ~~i~~ii~~-----G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~-~~~~~~vv~~Gaip~Lv~LL~s~~-~~v~e~A  182 (529)
T 3tpo_A          110 PPIDNIIRA-----GLIPKFVSFLGKTDCSPIQFESAWALTNIASGT-SEQTKAVVDGGAIPAFISLLASPH-AHISEQA  182 (529)
T ss_dssp             CCHHHHHHT-----THHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHH
T ss_pred             chHHHHHHC-----CCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHH
Confidence            455667777     999999999974 66999999999999998875 667788999999999999999999 9999999


Q ss_pred             HHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCC-----HHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcc
Q 011328           95 AWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPT-----DDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE  169 (488)
Q Consensus        95 ~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~-----~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~  169 (488)
                      +++|++++.++++.+..+++.|+++.|+.++..++     ..+...++|++.+++.+...........++++.|+.++ .
T Consensus       183 ~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL-~  261 (529)
T 3tpo_A          183 VWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL-H  261 (529)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHT-T
T ss_pred             HHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHh-c
Confidence            99999999988999999999999999999998643     45788999999999987655445555567889999999 7


Q ss_pred             cccHhHHHHHHHHHHHhhcCCCC-CChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHH
Q 011328          170 HAKLSMLRNATWTLSNFCRGKPQ-PLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLV  248 (488)
Q Consensus       170 ~~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~  248 (488)
                      +.++.++..++|+|.+++..... .......++++.|+.++.+++..++..++++|++++..++.....+++.|+++.|+
T Consensus       262 ~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~  341 (529)
T 3tpo_A          262 HNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFP  341 (529)
T ss_dssp             SSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHH
T ss_pred             CCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHH
Confidence            88999999999999999987632 33345579999999999999999999999999999998888888899999999999


Q ss_pred             HhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhc-CCHHHHHHHHHcC
Q 011328          249 ELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA-GNVNQIQAIIEAG  327 (488)
Q Consensus       249 ~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~  327 (488)
                      .++.++++.++..|+++|++++.+++.....+++.|+++.++.++.++ +.+++..|+|+|+|++. ++++.+..+++.|
T Consensus       342 ~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g  420 (529)
T 3tpo_A          342 SLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA-DFKTQKAAAWAITNYTSGGTVEQIVYLVHCG  420 (529)
T ss_dssp             HHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHTT
T ss_pred             HHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCC-CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCc
Confidence            999999999999999999999999998888999999999999999999 99999999999999997 5788889999999


Q ss_pred             ChHHHHHHHhcCChhHHHHHHHHHHHhccC-----CCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhh
Q 011328          328 IIGPLVNLLLNAEFEIKKEAAWAISNATSG-----GSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAG  401 (488)
Q Consensus       328 ~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~-----~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~  401 (488)
                      +++.|+++|.++|++++..++++|.++...     ........+.+.|+++.|..+..+++.++...|..+|.+.+..+
T Consensus       421 ~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~~~  499 (529)
T 3tpo_A          421 IIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSVE  499 (529)
T ss_dssp             CHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGGGCSSHHHHHHHHHHHHHHC---
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc
Confidence            999999999999999999999999999742     22344556778899999999999999999999999998887543

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=100.00  E-value=2.3e-36  Score=304.72  Aligned_cols=401  Identities=18%  Similarity=0.218  Sum_probs=342.3

Q ss_pred             hccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchh
Q 011328           29 LESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN  108 (488)
Q Consensus        29 ~~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~  108 (488)
                      .|.+|.|++.|+++++.++..|+++|.+++... ......+.+.|+++.|++++++++ ++++..++.+|.+++.++++.
T Consensus       100 ~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~~~~i~~~g~i~~L~~ll~~~~-~~~~~~~~~~L~~la~~~~~~  177 (529)
T 1jdh_A          100 SGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQES  177 (529)
T ss_dssp             TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHC-TTHHHHHHHHTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred             cCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC-cchHHHHHHcCCHHHHHHHHhcCC-HHHHHHHHHHHHHHHhCCHHH
Confidence            389999999999999999999999999998765 455777778999999999999988 899999999999999988999


Q ss_pred             hHHHHhCCCHHHHHHhhCCC-CHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhh
Q 011328          109 TRVVIDHGAVPIFVRLLSSP-TDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFC  187 (488)
Q Consensus       109 ~~~~~~~g~i~~L~~~L~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~  187 (488)
                      +..+.+.|+++.|+.++++. ....+..++.+|.+++.. +..+..+.+.|+++.++.++ .+.++.++..++|+|.+++
T Consensus       178 ~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~~~~L~~ll-~~~~~~~~~~a~~~L~~l~  255 (529)
T 1jdh_A          178 KLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNLS  255 (529)
T ss_dssp             HHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-TTHHHHHHHTTHHHHHHTTT-TSSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcC-cccHHHHHHCCCHHHHHHHH-hCCChHHHHHHHHHHHHHh
Confidence            99999999999999999874 566777889999999975 45688888999999999999 6668899999999999999


Q ss_pred             cCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCC--CCcchHhHHHHH
Q 011328          188 RGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH--PSPSVLIPALRT  265 (488)
Q Consensus       188 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~--~~~~v~~~a~~~  265 (488)
                      ...+..  ....+++|.+++++.++++.++..++++|++++..+++..+.+.+.|+++.|++++.+  .++.++..|+++
T Consensus       256 ~~~~~~--~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~  333 (529)
T 1jdh_A          256 DAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICA  333 (529)
T ss_dssp             TTCTTC--SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             cCChhh--HHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHH
Confidence            876332  2346899999999999999999999999999998877778889999999999999975  347899999999


Q ss_pred             HhHhhcCCch---hhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChh
Q 011328          266 VGNIVTGDDM---QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFE  342 (488)
Q Consensus       266 L~~l~~~~~~---~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~  342 (488)
                      |++++..++.   .+..+.+.++++.|+++|.++.++.++..++|+++|++.+ ++....+.+.|+++.|+.++.+++++
T Consensus       334 L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~-~~~~~~~~~~~~i~~L~~ll~~~~~~  412 (529)
T 1jdh_A          334 LRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC-PANHAPLREQGAIPRLVQLLVRAHQD  412 (529)
T ss_dssp             HHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTS-GGGHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcC-hhhhHHHHHcCCHHHHHHHHHHHhHH
Confidence            9999986543   3556778899999999999884469999999999999986 44457888999999999999988888


Q ss_pred             HHHHHHHHHHH----------------------hccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHh
Q 011328          343 IKKEAAWAISN----------------------ATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKA  400 (488)
Q Consensus       343 v~~~a~~aL~~----------------------l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~  400 (488)
                      +|..|+|++.|                      ++.  .++.+..+.+.|+++.|+.++.+++++++..+.++|.++...
T Consensus       413 v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~--~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~  490 (529)
T 1jdh_A          413 TQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILAR--DVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD  490 (529)
T ss_dssp             HC-----------CBTTBCHHHHHHHHHHHHHHHTT--SHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHhcccCchhhhccccHHHHHHHHHHHHHHHhc--CchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhcC
Confidence            88877766665                      443  345667788999999999999999999999999999998743


Q ss_pred             hhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 011328          401 GEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETY  451 (488)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~~~~~v~~~a~~~l~~~  451 (488)
                      .+             ++..+.+.|+++.|.+++++++++|+..|.+++.++
T Consensus       491 ~~-------------~~~~i~~~~~~~~L~~l~~~~~~~v~~~a~~aL~~l  528 (529)
T 1jdh_A          491 KE-------------AAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM  528 (529)
T ss_dssp             HH-------------HHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred             HH-------------HHHHHHHcCChHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence            22             578899999999999999999999999999999876

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=100.00  E-value=2.4e-37  Score=314.52  Aligned_cols=367  Identities=15%  Similarity=0.141  Sum_probs=317.0

Q ss_pred             ccHHHHHHHhcCC--CHHHHHHHHHHHHHHhccCCCccHHHHH-HcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCc
Q 011328           30 ESLPAMVAGVWSD--DRNIQLDATTQFRKLLSIERSPPINEVI-QSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTS  106 (488)
Q Consensus        30 ~~i~~l~~~L~s~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~  106 (488)
                      ..++.++++|.++  +++++..|++.|..+...  .+....++ +.|++|.|+++|++++ +.++..|+++|+|++.+++
T Consensus       377 ~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~--~~vk~~lv~d~g~Ip~LV~LL~s~d-~~i~~~al~~L~NLt~~~d  453 (810)
T 3now_A          377 KLAEACRRFLIKPGKDKDIRRWAADGLAYLTLD--AECKEKLIEDKASIHALMDLARGGN-QSCLYGVVTTFVNLCNAYE  453 (810)
T ss_dssp             HHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTS--HHHHHHHHHCHHHHHHHHHHHHTTC-GGGHHHHHHHHHHHTTCSC
T ss_pred             HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCC--cHHHHHHHHccchHHHHHHHhCCCC-hHHHHHHHHHHHHHcCCch
Confidence            3467788888887  899999999999997543  34455555 5799999999999988 8999999999999998542


Q ss_pred             h-----------------------------hh---HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHH
Q 011328          107 E-----------------------------NT---RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLV  154 (488)
Q Consensus       107 ~-----------------------------~~---~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~  154 (488)
                      +                             .+   ..+++.|+++.|+.+++++++.+++.|+|+|+|++.+ ++++..+
T Consensus       454 ~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d-~~~r~~V  532 (810)
T 3now_A          454 KQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGL-KELRGKV  532 (810)
T ss_dssp             CCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTS-HHHHHHH
T ss_pred             hhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHH
Confidence            1                             12   6788999999999999999999999999999999975 5589999


Q ss_pred             HhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCCh---hhhhchHHHHHHhhccC-ChhHHHHHHHHHHHhccC
Q 011328          155 LSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLF---EQTRPALPALERLIHSN-DDEVLTDACWALSYLSDG  230 (488)
Q Consensus       155 ~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~---~~~~~~~~~l~~ll~~~-~~~v~~~al~~L~~l~~~  230 (488)
                      .+.|++++|+.++ .+.++..++.|+|+|.+++.+......   ....+++|.|+.+|.++ +...+..++++|.|++..
T Consensus       533 v~~Gaip~Lv~LL-~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~  611 (810)
T 3now_A          533 VQEGGVKALLRMA-LEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASM  611 (810)
T ss_dssp             HHTTHHHHHHHHH-HSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTS
T ss_pred             HHCCCHHHHHHHH-ccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcC
Confidence            9999999999999 667788999999999999875422111   12356899999999865 344567899999999998


Q ss_pred             CchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhh-CCChHHHHHHhcccchhhHHHHHHHHH
Q 011328          231 TNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIIN-HQALPCLLDLLTQNYKKSIKKEACWTI  309 (488)
Q Consensus       231 ~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~~~~L~~lL~~~~~~~v~~~a~~~L  309 (488)
                      +++..+.+++.|+++.|+.++.++++.++..|+++|+|++.+.+ ....+.+ .+.++.|+.++.++ +..+|+.|+|+|
T Consensus       612 ~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~-~~~~~v~~~g~l~~Lv~LL~s~-d~~vq~~Aa~AL  689 (810)
T 3now_A          612 NESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSED-VIKMFEGNNDRVKFLALLCEDE-DEETATACAGAL  689 (810)
T ss_dssp             CHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHH-HHHHHHSSSSHHHHHHHGGGCS-SHHHHHHHHHHH
T ss_pred             CHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChH-HHHHHHhccCcHHHHHHHhcCC-CHHHHHHHHHHH
Confidence            87778889999999999999999999999999999999998655 4445554 78999999999998 899999999999


Q ss_pred             HHHhcCCHHHHHHHHH-cCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCC---CHH
Q 011328          310 SNITAGNVNQIQAIIE-AGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCP---DPR  385 (488)
Q Consensus       310 ~nl~~~~~~~~~~l~~-~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~---~~~  385 (488)
                      +|++.+++..++.+++ .|+++.|++++.+++.+++..|+|+|.|++.. +.+....+.+.|+++.|.++++.+   +.+
T Consensus       690 anLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~-s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~  768 (810)
T 3now_A          690 AIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINA-GEEIAKKLFETDIMELLSGLGQLPDDTRAK  768 (810)
T ss_dssp             HHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTT-CHHHHHHHHTSTHHHHHTTSCCCTTSTTHH
T ss_pred             HHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhC-CHHHHHHHHHCCCHHHHHHHHhCcccCcHH
Confidence            9999977888999998 89999999999999999999999999999984 578899999999999999999765   689


Q ss_pred             HHHHHHHHHHHHHHhhhhh
Q 011328          386 IVTVCLEGLENILKAGEAE  404 (488)
Q Consensus       386 v~~~al~~L~~l~~~~~~~  404 (488)
                      +++.++++|.++++.+.-.
T Consensus       769 i~e~Al~aL~~ll~~g~~~  787 (810)
T 3now_A          769 AREVATQCLAAAERYRIIE  787 (810)
T ss_dssp             HHHHHHHHHHHHHHHHTC-
T ss_pred             HHHHHHHHHHHHHhCCCcc
Confidence            9999999999999887643

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=100.00  E-value=6.4e-37  Score=300.70  Aligned_cols=365  Identities=18%  Similarity=0.209  Sum_probs=308.7

Q ss_pred             CHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHH
Q 011328           74 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDL  153 (488)
Q Consensus        74 ~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~  153 (488)
                      .+|.|+++|++++ ++++..|+++|.+++..++..+..+.+.|+++.|+++|+++++.++..|+++|.||+.++++.+..
T Consensus         3 ~l~~lv~~L~s~~-~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~   81 (457)
T 1xm9_A            3 TIPKAVQYLSSQD-EKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLE   81 (457)
T ss_dssp             CHHHHHHHHHSSC-THHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred             CHHHHHHHHCCCC-HHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence            5899999999998 899999999999999877888889999999999999999999999999999999999987888999


Q ss_pred             HHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhc--------c--------CChhHH
Q 011328          154 VLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH--------S--------NDDEVL  217 (488)
Q Consensus       154 ~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~--------~--------~~~~v~  217 (488)
                      +.+.|+++.|+++|..+.++.+++.++|+|++++........... |++|.|++++.        +        .+..+.
T Consensus        82 i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~  160 (457)
T 1xm9_A           82 TRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVF  160 (457)
T ss_dssp             HHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHH
T ss_pred             HHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHH
Confidence            999999999999995477899999999999999998544443455 99999999993        2        245677


Q ss_pred             HHHHHHHHHhccCCchhHHHHHHh-CCHHHHHHhcCC------CCcchHhHHHHHHhHhhcC------------------
Q 011328          218 TDACWALSYLSDGTNDKIQAVIEA-GVCPRLVELLRH------PSPSVLIPALRTVGNIVTG------------------  272 (488)
Q Consensus       218 ~~al~~L~~l~~~~~~~~~~~~~~-~~l~~L~~lL~~------~~~~v~~~a~~~L~~l~~~------------------  272 (488)
                      ..++++|.|++.. ++..+.+.+. |+++.|+.++.+      .+..+.+.++.+|.+++..                  
T Consensus       161 ~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~  239 (457)
T 1xm9_A          161 FNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARN  239 (457)
T ss_dssp             HHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC--
T ss_pred             HHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccccc
Confidence            7999999999987 6677778887 999999999975      4567888899999988731                  


Q ss_pred             --------------------------------CchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHH--
Q 011328          273 --------------------------------DDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVN--  318 (488)
Q Consensus       273 --------------------------------~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~--  318 (488)
                                                      .+...+.+++.++++.++.+|.+..++.++..|+|+|+|++.++..  
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~  319 (457)
T 1xm9_A          240 AYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMS  319 (457)
T ss_dssp             --------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHH
T ss_pred             ccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcch
Confidence                                            1123344556778899999998776789999999999999985432  


Q ss_pred             -HH-HHHH-HcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCC------HHHHHH
Q 011328          319 -QI-QAII-EAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPD------PRIVTV  389 (488)
Q Consensus       319 -~~-~~l~-~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~------~~v~~~  389 (488)
                       .. +..+ +.|++|.|+++|.+++.+++..|+|+|.|++.+.  + ...++..++++.|+++|...+      +++...
T Consensus       320 ~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~--~-~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~  396 (457)
T 1xm9_A          320 SGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHP--L-LHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSS  396 (457)
T ss_dssp             HHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSG--G-GHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHH
T ss_pred             HHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCH--H-HHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHH
Confidence             22 3444 5899999999999999999999999999998743  3 344556689999999999764      368889


Q ss_pred             HHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCC-CHHHHHHHHHHHHHhcCCCC
Q 011328          390 CLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHD-NTEIYEKAVKILETYWVEED  456 (488)
Q Consensus       390 al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~~-~~~v~~~a~~~l~~~~~~~~  456 (488)
                      ++.+|.+++..+..            +...+.+.|+++.|.+++.++ ++++++.|.++|++||..++
T Consensus       397 ~l~~l~ni~~~~~~------------~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~~~  452 (457)
T 1xm9_A          397 ACYTVRNLMASQPQ------------LAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKE  452 (457)
T ss_dssp             HHHHHHHHHTTCTH------------HHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTT
T ss_pred             HHHHHHHHHhcCHH------------HHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcchh
Confidence            99999999865442            477888999999999999999 99999999999999997654

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=100.00  E-value=9e-37  Score=294.31  Aligned_cols=371  Identities=18%  Similarity=0.190  Sum_probs=295.7

Q ss_pred             HHhhhccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCC-----------hhHHHH
Q 011328           25 IQLQLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDF-----------PQLQFE   93 (488)
Q Consensus        25 ~~~~~~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~-----------~~v~~~   93 (488)
                      +..+++.++.++..+.+.|+.   ...+.|..+...  .+....+++.|++|.|+++|+..+.           ++++..
T Consensus        27 ~~~~~~~~~~l~~~~~~~~~~---~~~~~ll~~~~~--~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~  101 (458)
T 3nmz_A           27 LGTKVEMVYSLLSMLGTHDKD---DMSRTLLAMSSS--QDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARAR  101 (458)
T ss_dssp             ------------------CCH---HHHHHHHHHHSS--TTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHH
T ss_pred             cCchHHHHHHHHHHhcCCCHH---HHHHHHHHHHcC--CcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHH
Confidence            355678889999999987776   255666665432  4555888999999999999997542           699999


Q ss_pred             HHHHHHHhcCCCchhhHHHHhCCCH----------HHHHHhhCCC--CHH-----HHH-------HHHHHHhhhhCCCch
Q 011328           94 AAWALTNIASGTSENTRVVIDHGAV----------PIFVRLLSSP--TDD-----VRE-------QAVWALGNVAGDSPK  149 (488)
Q Consensus        94 a~~~L~~l~~~~~~~~~~~~~~g~i----------~~L~~~L~~~--~~~-----v~~-------~a~~~L~~l~~~~~~  149 (488)
                      |+|+|.||+.+.++......+.+++          +.+++++.+.  +.+     +++       .|+|+|+|++.+ ++
T Consensus       102 a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~-~e  180 (458)
T 3nmz_A          102 ASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFD-EE  180 (458)
T ss_dssp             HHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTS-HH
T ss_pred             HHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcCC-HH
Confidence            9999999999888888887777777          6667777653  222     555       899999999766 77


Q ss_pred             hHHHHHhcCChHHHHHHhcc----------cccHhHHHHHHHHHHHhhcCCCCCChhh--hhchHHHHHHhhccCChhHH
Q 011328          150 CRDLVLSNGALMPLLAQFNE----------HAKLSMLRNATWTLSNFCRGKPQPLFEQ--TRPALPALERLIHSNDDEVL  217 (488)
Q Consensus       150 ~~~~~~~~~~l~~L~~ll~~----------~~~~~v~~~a~~~L~~l~~~~~~~~~~~--~~~~~~~l~~ll~~~~~~v~  217 (488)
                      +|+.+.+.|++++|+.++..          +.++.++..|+|+|.+|+.+.+......  ..|++|.|+.+|++++++++
T Consensus       181 ~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~  260 (458)
T 3nmz_A          181 HRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQ  260 (458)
T ss_dssp             HHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHH
Confidence            89999999999999999942          2457789999999999998864233222  46779999999999999999


Q ss_pred             HHHHHHHHHhccC-CchhHHHHHHhCCHHHHHHhc-CCCCcchHhHHHHHHhHhhcCCchhhHHHh-hCCChHHHHHHhc
Q 011328          218 TDACWALSYLSDG-TNDKIQAVIEAGVCPRLVELL-RHPSPSVLIPALRTVGNIVTGDDMQTQCII-NHQALPCLLDLLT  294 (488)
Q Consensus       218 ~~al~~L~~l~~~-~~~~~~~~~~~~~l~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~~~~L~~lL~  294 (488)
                      ..++++|++++.. ++.....+.+.|+++.|+++| .+.++.+++.|+.+|++++.+++.....+. ..|+++.|+.+|.
T Consensus       261 ~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~  340 (458)
T 3nmz_A          261 QVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLT  340 (458)
T ss_dssp             HHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTT
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhc
Confidence            9999999999975 456667788999999999975 557789999999999999985555555565 7899999999998


Q ss_pred             ccchh---hHHHHHHHHHHHHhc---CCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHH
Q 011328          295 QNYKK---SIKKEACWTISNITA---GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVS  368 (488)
Q Consensus       295 ~~~~~---~v~~~a~~~L~nl~~---~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~  368 (488)
                      +..+.   .++..|+|+|.|++.   ++++.++.+.+.|+++.|+.+|.+++..++++|+++|.|++.. ++++...+.+
T Consensus       341 ~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~-~~~~~~~i~~  419 (458)
T 3nmz_A          341 YRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR-NPKDQEALWD  419 (458)
T ss_dssp             CCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSS-CHHHHHHHHH
T ss_pred             CCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcC-CHHHHHHHHH
Confidence            77232   599999999999997   6789999999999999999999999999999999999999864 5788999999


Q ss_pred             CCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhh
Q 011328          369 QGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGE  402 (488)
Q Consensus       369 ~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~~  402 (488)
                      .|+++.|+++++++++++++.|+++|.+|+...+
T Consensus       420 ~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~p  453 (458)
T 3nmz_A          420 MGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRP  453 (458)
T ss_dssp             HTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCCS
T ss_pred             CCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCH
Confidence            9999999999999999999999999999987643

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=100.00  E-value=1.2e-35  Score=305.57  Aligned_cols=405  Identities=19%  Similarity=0.224  Sum_probs=347.5

Q ss_pred             hccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchh
Q 011328           29 LESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN  108 (488)
Q Consensus        29 ~~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~  108 (488)
                      .+.++.|++.|+++++.++..|+++|.+++... ......+.+.|+++.|+++|++++ ++++..++.+|.+++..+++.
T Consensus        97 ~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~-~~~~~~v~~~g~i~~Lv~lL~~~~-~~~~~~a~~~L~~La~~~~~~  174 (644)
T 2z6h_A           97 SGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQES  174 (644)
T ss_dssp             TTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHS-TTHHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred             cCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCc-chhHHHHHHCCChHHHHHHHCcCC-HHHHHHHHHHHHHHHhcCcHH
Confidence            389999999999999999999999999998875 566777788999999999999998 899999999999999878999


Q ss_pred             hHHHHhCCCHHHHHHhhCCC-CHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhh
Q 011328          109 TRVVIDHGAVPIFVRLLSSP-TDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFC  187 (488)
Q Consensus       109 ~~~~~~~g~i~~L~~~L~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~  187 (488)
                      +..+.+.|+++.|++++++. ...++..++.+|.+++.. +..+..+.+.|+++.++.++ .+.+..++..++++|.+++
T Consensus       175 ~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~-~~~~~~l~~~g~l~~L~~ll-~~~~~~~~~~a~~~L~nL~  252 (644)
T 2z6h_A          175 KLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNLS  252 (644)
T ss_dssp             HHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTC-TTHHHHHHHTTHHHHHHTTT-TCSCHHHHHHHHHHHHHHG
T ss_pred             HHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcC-cccHHHHHHCCCHHHHHHHH-hcCCHHHHHHHHHHHHHHh
Confidence            99999999999999999874 477889999999999965 45688899999999999999 6668999999999999999


Q ss_pred             cCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCC--CcchHhHHHHH
Q 011328          188 RGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP--SPSVLIPALRT  265 (488)
Q Consensus       188 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~--~~~v~~~a~~~  265 (488)
                      ...+..  ....++++.+++++++.++.++..++++|.+++..++...+.+.+.|+++.|+.++.+.  .+.++..|+++
T Consensus       253 ~~~~~~--~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~a  330 (644)
T 2z6h_A          253 DAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICA  330 (644)
T ss_dssp             GGCTTC--CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             hcchhh--hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHH
Confidence            875332  33468999999999999999999999999999998777778889999999999999763  36899999999


Q ss_pred             HhHhhcCCch---hhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCC--
Q 011328          266 VGNIVTGDDM---QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAE--  340 (488)
Q Consensus       266 L~~l~~~~~~---~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~--  340 (488)
                      |++++...+.   ....+.+.++++.|+++|.++.++.+++.++|+|+|++.+.. ....+.+.|+++.|++++.+++  
T Consensus       331 L~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~-~~~~i~~~~~i~~Lv~lL~~~~~~  409 (644)
T 2z6h_A          331 LRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA-NHAPLREQGAIPRLVQLLVRAHQD  409 (644)
T ss_dssp             HHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGG-GHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHH-HHHHHHHcCCHHHHHHHHhccchh
Confidence            9999975442   234467889999999999987447999999999999998644 4478889999999999998754  


Q ss_pred             --------------------hhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHh
Q 011328          341 --------------------FEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKA  400 (488)
Q Consensus       341 --------------------~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~  400 (488)
                                          .+++..++.+|.+++..  ......+.+.|+++.|++++.+++++++..++.+|.++...
T Consensus       410 vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~--~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~  487 (644)
T 2z6h_A          410 TQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARD--VHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD  487 (644)
T ss_dssp             HTTC----------CCSSCHHHHHHHHHHHHHHHTTS--HHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS
T ss_pred             hhhHhhhccccchhcccccHHHHHHHHHHHHHHHhcC--HHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence                                34566777777777753  36667888999999999999999999999999999998754


Q ss_pred             hhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHH--------------------HHHHHHHhcCCC
Q 011328          401 GEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEK--------------------AVKILETYWVEE  455 (488)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~~~~~v~~~--------------------a~~~l~~~~~~~  455 (488)
                      .+             ++..+.+.|+++.|.+++.+++++++..                    +..++.+||..+
T Consensus       488 ~~-------------~~~~i~~~g~l~~L~~ll~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~il~~~~~~~  549 (644)
T 2z6h_A          488 KE-------------AAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSVELTSSLFRTE  549 (644)
T ss_dssp             HH-------------HHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHSCCS
T ss_pred             HH-------------HHHHHHHcCChhHHHHHHcCCCHHHHHHHHHHHHHHhccCcHhhhcccchHHHHHHHhCC
Confidence            22             5788999999999999999999999554                    455677777665

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=100.00  E-value=2.4e-36  Score=307.12  Aligned_cols=408  Identities=16%  Similarity=0.146  Sum_probs=336.7

Q ss_pred             hhccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCc-
Q 011328           28 QLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTS-  106 (488)
Q Consensus        28 ~~~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~-  106 (488)
                      .-|.++.++.++.|+++.++..|++++.+.+++  ...++.+++.|+ +.|+.++++++ +.+|..|+.+|++++.... 
T Consensus       288 ~~G~v~~li~Ll~s~~~~~q~~A~~al~~aa~~--~~~R~~I~~~gv-~~L~~Ll~s~~-~~vr~~Al~~L~kl~s~~~~  363 (810)
T 3now_A          288 REGILQMILAMATTDDELQQRVACECLIAASSK--KDKAKALCEQGV-DILKRLYHSKN-DGIRVRALVGLCKLGSYGGQ  363 (810)
T ss_dssp             TTTHHHHHHHHHHSSCHHHHHHHHHHHHHHTTS--HHHHHTTHHHHH-HHHHHHTTCSC-HHHHHHHHHHHHHHHTTTTT
T ss_pred             ccchHHHHHHHhCCCCHHHHHHHHHHHHHHcCC--cHHHHHHHHcCc-HHHHHHHcCCC-HHHHHHHHHHHHHhcccccc
Confidence            349999999999999999999999999996554  567777778775 99999999888 8999999999999985222 


Q ss_pred             hhhHHHHhCCC----HHHHHHhhCCC--CHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHH
Q 011328          107 ENTRVVIDHGA----VPIFVRLLSSP--TDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNAT  180 (488)
Q Consensus       107 ~~~~~~~~~g~----i~~L~~~L~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~  180 (488)
                      +.....++.|.    ++.+.++|.++  ++++++.|+|+|++++.+.+.......+.|+++.|+.++ ++.++.++..++
T Consensus       364 d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL-~s~d~~i~~~al  442 (810)
T 3now_A          364 DAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLA-RGGNQSCLYGVV  442 (810)
T ss_dssp             TTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHH-HTTCGGGHHHHH
T ss_pred             CccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHh-CCCChHHHHHHH
Confidence            22223333343    56778888887  899999999999999987665444555679999999999 678899999999


Q ss_pred             HHHHHhhcCCCCC---------------------------------ChhhhhchHHHHHHhhccCChhHHHHHHHHHHHh
Q 011328          181 WTLSNFCRGKPQP---------------------------------LFEQTRPALPALERLIHSNDDEVLTDACWALSYL  227 (488)
Q Consensus       181 ~~L~~l~~~~~~~---------------------------------~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l  227 (488)
                      ++|.|++.+.+..                                 ......|++|.++.+++++++.+++.++|+|+|+
T Consensus       443 ~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NL  522 (810)
T 3now_A          443 TTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAV  522 (810)
T ss_dssp             HHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence            9999999864211                                 1233468999999999999999999999999999


Q ss_pred             ccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHH--HhhCCChHHHHHHhcccchhhHHHHH
Q 011328          228 SDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQC--IINHQALPCLLDLLTQNYKKSIKKEA  305 (488)
Q Consensus       228 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~--~~~~~~~~~L~~lL~~~~~~~v~~~a  305 (488)
                      +.. ++....+++.|+++.|+.+|.++++..++.|+++|++++.+.......  ....++++.|+.+|.++.+...+..|
T Consensus       523 A~d-~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eA  601 (810)
T 3now_A          523 CGL-KELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFES  601 (810)
T ss_dssp             HTS-HHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHH
T ss_pred             cCC-HHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHH
Confidence            965 457788999999999999999999999999999999998754322110  01135899999999865334456789


Q ss_pred             HHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHH-CCChHHHHhhcCCCCH
Q 011328          306 CWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVS-QGCIKPLCDLLNCPDP  384 (488)
Q Consensus       306 ~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~-~~~i~~L~~ll~~~~~  384 (488)
                      +++|.|++..+++.++.+++.|+++.|+.++.++++.++..|+++|+|++.+  ++....+.+ .|.++.|+.++++++.
T Consensus       602 l~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~--~~~~~~~v~~~g~l~~Lv~LL~s~d~  679 (810)
T 3now_A          602 LMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMS--EDVIKMFEGNNDRVKFLALLCEDEDE  679 (810)
T ss_dssp             HHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTS--HHHHHHHHSSSSHHHHHHHGGGCSSH
T ss_pred             HHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCC--hHHHHHHHhccCcHHHHHHHhcCCCH
Confidence            9999999998888899999999999999999999999999999999999974  356666665 6899999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCC
Q 011328          385 RIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVE  454 (488)
Q Consensus       385 ~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~  454 (488)
                      .++..|+++|.++....+..           ....+...|+++.|.+++.+++.++++.|.+.+.++...
T Consensus       680 ~vq~~Aa~ALanLt~~s~~~-----------~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~  738 (810)
T 3now_A          680 ETATACAGALAIITSVSVKC-----------CEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINA  738 (810)
T ss_dssp             HHHHHHHHHHHHHHHHCHHH-----------HHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhCCCHHH-----------HHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhC
Confidence            99999999999998743321           133444389999999999999999999999999999774

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=100.00  E-value=7.4e-36  Score=300.51  Aligned_cols=369  Identities=25%  Similarity=0.357  Sum_probs=327.7

Q ss_pred             ccHHHHHHHhcCC-CHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchh
Q 011328           30 ESLPAMVAGVWSD-DRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN  108 (488)
Q Consensus        30 ~~i~~l~~~L~s~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~  108 (488)
                      +.+|.|++.|.++ ++.++..|+++|.+++... .+....++..|+++.|+++|++++ +.++..|+++|++++..+++.
T Consensus       130 g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~-~~~~~~~~~~g~i~~Lv~lL~~~~-~~vr~~A~~aL~~l~~~~~~~  207 (530)
T 1wa5_B          130 GVVPRLVEFMRENQPEMLQLEAAWALTNIASGT-SAQTKVVVDADAVPLFIQLLYTGS-VEVKEQAIWALGNVAGDSTDY  207 (530)
T ss_dssp             TCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTCHHHHHHHHHHCC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred             CCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCC-HHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhCCCccc
Confidence            9999999999987 8999999999999988754 456777888999999999999988 999999999999999977899


Q ss_pred             hHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhc
Q 011328          109 TRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR  188 (488)
Q Consensus       109 ~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~  188 (488)
                      +..+...|+++.|+.++.+.++.++..++++|++++.+...........++++.|+.++ .+.++.++..++++|.+++.
T Consensus       208 ~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL-~~~d~~v~~~a~~~L~~L~~  286 (530)
T 1wa5_B          208 RDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI-YSMDTETLVDACWAISYLSD  286 (530)
T ss_dssp             HHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHT-TCCCHHHHHHHHHHHHHHHS
T ss_pred             hHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHH-cCCCHHHHHHHHHHHHHHhC
Confidence            99999999999999999999999999999999999977622234455678999999999 67789999999999999998


Q ss_pred             CCCC-CChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHh
Q 011328          189 GKPQ-PLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVG  267 (488)
Q Consensus       189 ~~~~-~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~  267 (488)
                      ..+. .......++++.++.++.++++.++..++++|++++...+...+.+++.|+++.|+.+|.++++.++..|+++|+
T Consensus       287 ~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~  366 (530)
T 1wa5_B          287 GPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTIS  366 (530)
T ss_dssp             SCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            6522 223334689999999999999999999999999999888777788888999999999999999999999999999


Q ss_pred             HhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcC-CH--HHHHHHHHcCChHHHHHHHhcCChhHH
Q 011328          268 NIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG-NV--NQIQAIIEAGIIGPLVNLLLNAEFEIK  344 (488)
Q Consensus       268 ~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~--~~~~~l~~~~~l~~L~~ll~~~~~~v~  344 (488)
                      +++.+++...+.+++.++++.|+.+|.++ ++.++..|+|+|+|++.. .+  +....+++.|+++.|+.++.++++.++
T Consensus       367 ~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~  445 (530)
T 1wa5_B          367 NITAGNTEQIQAVIDANLIPPLVKLLEVA-EYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRII  445 (530)
T ss_dssp             HHTTSCHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHH
T ss_pred             HHHcCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHH
Confidence            99998887888888899999999999988 899999999999999983 45  778888999999999999999999999


Q ss_pred             HHHHHHHHHhccCCCH----------HHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhh
Q 011328          345 KEAAWAISNATSGGSN----------EQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGE  402 (488)
Q Consensus       345 ~~a~~aL~~l~~~~~~----------~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~~  402 (488)
                      ..++++|.+++.....          .....+.+.|+++.|..++.+++++++..+..+|.+++...+
T Consensus       446 ~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~~~~~~~~  513 (530)
T 1wa5_B          446 EVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFGEEE  513 (530)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHHSSSCC
T ss_pred             HHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCccc
Confidence            9999999999864321          245678889999999999999999999999999999886544

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=100.00  E-value=5.7e-36  Score=301.44  Aligned_cols=375  Identities=24%  Similarity=0.356  Sum_probs=332.1

Q ss_pred             CChhhHHHHhhhccHHHHHHHhcCCC-HHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHH
Q 011328           18 MDPMFFIIQLQLESLPAMVAGVWSDD-RNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAW   96 (488)
Q Consensus        18 ~~~~~~~~~~~~~~i~~l~~~L~s~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~   96 (488)
                      ...++..     |.+|.|++.|.+++ +.++..|+++|.++++.. .+....+++.|+++.|+.+|.+++ +.++..|++
T Consensus       110 ~~~~~~~-----g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~-~~~~~~~~~~g~i~~L~~lL~~~~-~~v~~~a~~  182 (528)
T 4b8j_A          110 IEEVIQS-----GVVPRFVQFLTREDFPQLQFEAAWALTNIASGT-SENTKVVIDHGAVPIFVKLLGSSS-DDVREQAVW  182 (528)
T ss_dssp             HHHHHHT-----TCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHH
T ss_pred             HHHHHHC-----CCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCC-HHHHHHHHhCCcHHHHHHHhcCCC-HHHHHHHHH
Confidence            4445555     99999999999876 999999999999998764 567788889999999999999988 999999999


Q ss_pred             HHHHhcCCCchhhHHHHhCCCHHHHHHhh-CCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhH
Q 011328           97 ALTNIASGTSENTRVVIDHGAVPIFVRLL-SSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSM  175 (488)
Q Consensus        97 ~L~~l~~~~~~~~~~~~~~g~i~~L~~~L-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v  175 (488)
                      +|++++..++..+..+.+.|+++.|+.++ .+.++.++..++|+|++++...+.. ......++++.|+.++ .+.++.+
T Consensus       183 aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~-~~~~~~~~l~~L~~lL-~~~~~~v  260 (528)
T 4b8j_A          183 ALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQP-SFEQTRPALPALARLI-HSNDEEV  260 (528)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCC-CHHHHTTHHHHHHHHT-TCCCHHH
T ss_pred             HHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCC-cHHHHHHHHHHHHHHH-CCCCHHH
Confidence            99999997888999999999999999999 5688999999999999999876433 3344578999999999 7788999


Q ss_pred             HHHHHHHHHHhhcCCCCC-ChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCC
Q 011328          176 LRNATWTLSNFCRGKPQP-LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP  254 (488)
Q Consensus       176 ~~~a~~~L~~l~~~~~~~-~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~  254 (488)
                      +..++++|.+++...+.. ......++++.++.++.++++.++..++++|++++...+...+.+++.|+++.|+.+|.++
T Consensus       261 ~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~  340 (528)
T 4b8j_A          261 LTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQN  340 (528)
T ss_dssp             HHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCC
Confidence            999999999999775322 3344568999999999999999999999999999998888888888999999999999998


Q ss_pred             -CcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcC-CHHHHHHHHHcCChHHH
Q 011328          255 -SPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG-NVNQIQAIIEAGIIGPL  332 (488)
Q Consensus       255 -~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~l~~L  332 (488)
                       ++.++..|+++|++++.+++.....+++.++++.|+.+|.++ +..++..|+++|+|++.+ +++....+++.|+++.|
T Consensus       341 ~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L  419 (528)
T 4b8j_A          341 LKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTA-EFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPL  419 (528)
T ss_dssp             CCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHH
T ss_pred             CcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHH
Confidence             899999999999999998888888888999999999999998 999999999999999984 78889999999999999


Q ss_pred             HHHHhcCChhHHHHHHHHHHHhccCCCH----------HHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhh
Q 011328          333 VNLLLNAEFEIKKEAAWAISNATSGGSN----------EQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGE  402 (488)
Q Consensus       333 ~~ll~~~~~~v~~~a~~aL~~l~~~~~~----------~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~~  402 (488)
                      +.++..++++++..++++|.+++.....          .....+.+.|+++.+..+.++++++++..+..++.+++...+
T Consensus       420 ~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~~~~~~e~  499 (528)
T 4b8j_A          420 CDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYWMDEE  499 (528)
T ss_dssp             HHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC---
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCcc
Confidence            9999999999999999999999864422          356778889999999999999999999999999999876543

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=100.00  E-value=1e-35  Score=293.82  Aligned_cols=368  Identities=25%  Similarity=0.345  Sum_probs=324.0

Q ss_pred             ccHHHHHHHhcCC-CHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchh
Q 011328           30 ESLPAMVAGVWSD-DRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN  108 (488)
Q Consensus        30 ~~i~~l~~~L~s~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~  108 (488)
                      +.+|.|++.|+++ ++.++..|+++|.+++... .+....+++.|+++.|+++|++++ +++|..|+++|++++..+++.
T Consensus        64 ~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~L~~lL~~~~-~~vr~~a~~~L~~l~~~~~~~  141 (450)
T 2jdq_A           64 GVVARFVEFLKRKENCTLQFESAWVLTNIASGN-SLQTRIVIQAGAVPIFIELLSSEF-EDVQEQAVWALGNIAGDSTMC  141 (450)
T ss_dssp             THHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred             CcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCC-HHHHHHHHhCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHccCCHHH
Confidence            7899999999988 8999999999999998764 456677788999999999999988 999999999999999988889


Q ss_pred             hHHHHhCCCHHHHHHhhCC-CCHHHHHHHHHHHhhhhCCC-chhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHh
Q 011328          109 TRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDS-PKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNF  186 (488)
Q Consensus       109 ~~~~~~~g~i~~L~~~L~~-~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l  186 (488)
                      +..+++.|+++.|+.++.+ .+..++..++++|++++.+. +....... .++++.++.++ .+.++.++..++|+|.++
T Consensus       142 ~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~~l-~~~~~~v~~~a~~~L~~l  219 (450)
T 2jdq_A          142 RDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKV-SPCLNVLSWLL-FVSDTDVLADACWALSYL  219 (450)
T ss_dssp             HHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGT-GGGHHHHHHHT-TCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHH-HHHHHHHHHHH-ccCCHHHHHHHHHHHHHH
Confidence            9999999999999999996 78999999999999999765 33222222 67899999999 677899999999999999


Q ss_pred             hcCC-CCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHH
Q 011328          187 CRGK-PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT  265 (488)
Q Consensus       187 ~~~~-~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~  265 (488)
                      +... +........++++.++.++.++++.++..++++|++++...+...+.+.+.|+++.|+.++.++++.++..|+++
T Consensus       220 ~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~  299 (450)
T 2jdq_A          220 SDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWT  299 (450)
T ss_dssp             TSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred             HCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHH
Confidence            9865 222333446899999999999999999999999999999887777778888999999999999999999999999


Q ss_pred             HhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcC-CHHHHHHHHHcCChHHHHHHHhcCChhHH
Q 011328          266 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG-NVNQIQAIIEAGIIGPLVNLLLNAEFEIK  344 (488)
Q Consensus       266 L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~l~~L~~ll~~~~~~v~  344 (488)
                      |++++.+++...+.+++.++++.++.++.++ ++.+|..|+|+|+|++.+ +++..+.+++.|+++.|+.++.+++++++
T Consensus       300 L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~  378 (450)
T 2jdq_A          300 ISNITAGNRAQIQTVIDANIFPALISILQTA-EFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIV  378 (450)
T ss_dssp             HHHHTTSCHHHHHHHHHTTHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHH
T ss_pred             HHHHHcCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHH
Confidence            9999998888888888889999999999998 899999999999999984 67888888899999999999999999999


Q ss_pred             HHHHHHHHHhccCCCH----------HHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhh
Q 011328          345 KEAAWAISNATSGGSN----------EQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGE  402 (488)
Q Consensus       345 ~~a~~aL~~l~~~~~~----------~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~~  402 (488)
                      ..|+++|.+++..+..          .....+.+.|+++.|..++++++++++..+..+|.+++...+
T Consensus       379 ~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~  446 (450)
T 2jdq_A          379 QVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFGTED  446 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHHHHHCCC-
T ss_pred             HHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCccc
Confidence            9999999999874422          234677788999999999999999999999999999985443

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=100.00  E-value=5.8e-34  Score=297.24  Aligned_cols=402  Identities=20%  Similarity=0.219  Sum_probs=343.2

Q ss_pred             hccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchh
Q 011328           29 LESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN  108 (488)
Q Consensus        29 ~~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~  108 (488)
                      .|.++.|++.|+++++.++..|+++|.+++... ......+.+.|+++.|+++|++++ .+++..++.+|.+++..+++.
T Consensus       233 ~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~-~~~~~~v~~~g~v~~Lv~lL~~~~-~~v~~~a~~aL~~La~~~~e~  310 (780)
T 2z6g_A          233 SGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQES  310 (780)
T ss_dssp             TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHS-TTHHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred             cCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCC-hhhHHHHHHcCCHHHHHHHHhcCC-HHHHHHHHHHHHHHhcCChHH
Confidence            389999999999999999999999999998765 456677778999999999999988 899999999999999878999


Q ss_pred             hHHHHhCCCHHHHHHhhCCCC-HHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhh
Q 011328          109 TRVVIDHGAVPIFVRLLSSPT-DDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFC  187 (488)
Q Consensus       109 ~~~~~~~g~i~~L~~~L~~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~  187 (488)
                      +..+.+.|+++.|+.++++.+ ...+..++.+|.+++... ..+..+.+.|+++.|+.++ .+.+..++..++++|.+++
T Consensus       311 ~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~-~~~~~i~~~g~l~~Ll~lL-~~~~~~~~~~a~~~L~~L~  388 (780)
T 2z6g_A          311 KLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCS-SNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNLS  388 (780)
T ss_dssp             HHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTST-THHHHHHHTTHHHHHGGGT-TCSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCh-HHHHHHHHhchHHHHHHHH-cCCchHHHHHHHHHHHHHh
Confidence            999999999999999999754 566778899999999754 4678888999999999999 6678889999999999999


Q ss_pred             cCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCC-CC-cchHhHHHHH
Q 011328          188 RGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH-PS-PSVLIPALRT  265 (488)
Q Consensus       188 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-~~-~~v~~~a~~~  265 (488)
                      .....  .....++++.++.++++.++.++..++++|++++..++.....+.+.++++.|+.+|.+ ++ +.++..|+++
T Consensus       389 ~~~~~--~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~a  466 (780)
T 2z6g_A          389 DAATK--QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICA  466 (780)
T ss_dssp             TTCTT--CSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             ccchh--hhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHH
Confidence            87633  22346899999999999999999999999999999887777888889999999999976 33 3899999999


Q ss_pred             HhHhhcCCchh---hHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCC--
Q 011328          266 VGNIVTGDDMQ---TQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAE--  340 (488)
Q Consensus       266 L~~l~~~~~~~---~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~--  340 (488)
                      |++++...+..   ...+...++++.|+.+|.++..+.++..|+|+|+|++.+ +.....+.+.|+++.|++++.+++  
T Consensus       467 L~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~  545 (780)
T 2z6g_A          467 LRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC-PANHAPLREQGAIPRLVQLLVRAHQD  545 (780)
T ss_dssp             HHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSS-HHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcC-HHHHHHHHHCCCHHHHHHHHHhcchh
Confidence            99998755432   346678899999999999884459999999999999986 555678889999999999998654  


Q ss_pred             --------------------hhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHh
Q 011328          341 --------------------FEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKA  400 (488)
Q Consensus       341 --------------------~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~  400 (488)
                                          .+++..++.+|.+++.  +++....+.+.|+++.|++++.++++.++..++.+|.++...
T Consensus       546 ~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~--~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~  623 (780)
T 2z6g_A          546 TQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILAR--DIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD  623 (780)
T ss_dssp             HHHTTC------CCSTTCCHHHHHHHHHHHHHHHTT--SHHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHhhccccchhhcccChHHHHHHHHHHHHHHhc--ChhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcC
Confidence                                3466678888888875  457777788999999999999999999999999999999743


Q ss_pred             hhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 011328          401 GEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYW  452 (488)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~~~~~v~~~a~~~l~~~~  452 (488)
                      .+             ++..+.+.|+++.|.+++++++++|+..|...|.++.
T Consensus       624 ~~-------------~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~  662 (780)
T 2z6g_A          624 KE-------------AAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS  662 (780)
T ss_dssp             HH-------------HHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred             HH-------------HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence            22             5888999999999999999999999766544444333

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=100.00  E-value=5.1e-36  Score=294.28  Aligned_cols=364  Identities=16%  Similarity=0.191  Sum_probs=303.2

Q ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhH
Q 011328           31 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR  110 (488)
Q Consensus        31 ~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~  110 (488)
                      .+|.+++.|+++++.++..|+++|.+++... ......+.+.|++|.|+++|++++ ++++..|+++|.+++.++++++.
T Consensus         3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~-~~~~~~i~~~g~i~~Lv~lL~s~~-~~~~~~A~~aL~nLa~~~~~~k~   80 (457)
T 1xm9_A            3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQD-ESAKQQVYQLGGICKLVDLLRSPN-QNVQQAAAGALRNLVFRSTTNKL   80 (457)
T ss_dssp             CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSC-SSHHHHHHHTTHHHHHHHHTTSSC-HHHHHHHHHHHHHHHSSCHHHHH
T ss_pred             CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCHHHHH
Confidence            5889999999999999999999999987543 445668889999999999999988 99999999999999997799999


Q ss_pred             HHHhCCCHHHHHHhhC-CCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcc--------c-------ccHh
Q 011328          111 VVIDHGAVPIFVRLLS-SPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE--------H-------AKLS  174 (488)
Q Consensus       111 ~~~~~g~i~~L~~~L~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~--------~-------~~~~  174 (488)
                      .+++.|+++.|+++|+ ++++++++.++|+|+|++.+ +..+..+.+ |+++.|+.++..        .       .++.
T Consensus        81 ~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~  158 (457)
T 1xm9_A           81 ETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPE  158 (457)
T ss_dssp             HHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHH
T ss_pred             HHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHH
Confidence            9999999999999999 78999999999999999988 557888888 999999999931        1       3567


Q ss_pred             HHHHHHHHHHHhhcCCCCCChhhhh-chHHHHHHhhcc------CChhHHHHHHHHHHHhccCC----------------
Q 011328          175 MLRNATWTLSNFCRGKPQPLFEQTR-PALPALERLIHS------NDDEVLTDACWALSYLSDGT----------------  231 (488)
Q Consensus       175 v~~~a~~~L~~l~~~~~~~~~~~~~-~~~~~l~~ll~~------~~~~v~~~al~~L~~l~~~~----------------  231 (488)
                      +++.|+|+|.+|+.+.+....+... |+++.|+.++++      .+..+++.++.+|.+++...                
T Consensus       159 v~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~  238 (457)
T 1xm9_A          159 VFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNAR  238 (457)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC-
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccc
Confidence            8889999999999873333333334 999999999986      46778889999999886310                


Q ss_pred             ----------------------------------chhHHHHHHhCCHHHHHHhcCC-CCcchHhHHHHHHhHhhcCCchh
Q 011328          232 ----------------------------------NDKIQAVIEAGVCPRLVELLRH-PSPSVLIPALRTVGNIVTGDDMQ  276 (488)
Q Consensus       232 ----------------------------------~~~~~~~~~~~~l~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~  276 (488)
                                                        +...+.+++.++++.++.+|.+ +++.+++.|+++|+|++.++...
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~  318 (457)
T 1xm9_A          239 NAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLM  318 (457)
T ss_dssp             ---------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSH
T ss_pred             cccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcc
Confidence                                              1122334455678888888865 46889999999999999876542


Q ss_pred             h----HHHh-hCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCh------hHHH
Q 011328          277 T----QCII-NHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEF------EIKK  345 (488)
Q Consensus       277 ~----~~~~-~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~------~v~~  345 (488)
                      .    +.++ +.++++.|+++|.++ +.++++.|+|+|.|++.+ ++ .+.++..++++.|+++|..+++      ++..
T Consensus       319 ~~~~~~~~v~~~~~l~~Lv~LL~~~-~~~v~~~A~~aL~nls~~-~~-~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~  395 (457)
T 1xm9_A          319 SSGMSQLIGLKEKGLPQIARLLQSG-NSDVVRSGASLLSNMSRH-PL-LHRVMGNQVFPEVTRLLTSHTGNTSNSEDILS  395 (457)
T ss_dssp             HHHHHHHHHTTSCCHHHHHHHTTCS-CHHHHHHHHHHHHHHHTS-GG-GHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHH
T ss_pred             hHHHHHHHHHHcCCchHHHHHHhCC-CHhHHHHHHHHHHHHhcC-HH-HHHHHHHhhhHHHHHhccCCCCCCCCcHHHHH
Confidence            1    3333 689999999999999 899999999999999885 33 3455566899999999998743      6888


Q ss_pred             HHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCC-CHHHHHHHHHHHHHHHHhhh
Q 011328          346 EAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCP-DPRIVTVCLEGLENILKAGE  402 (488)
Q Consensus       346 ~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~al~~L~~l~~~~~  402 (488)
                      .++++|.++.... ++....+.+.|+++.|.+++.++ +++++..|.+.|.+++...+
T Consensus       396 ~~l~~l~ni~~~~-~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~~~  452 (457)
T 1xm9_A          396 SACYTVRNLMASQ-PQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKE  452 (457)
T ss_dssp             HHHHHHHHHHTTC-THHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTT
T ss_pred             HHHHHHHHHHhcC-HHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcchh
Confidence            9999999998754 57888888999999999999999 89999999999999885543

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=100.00  E-value=2.8e-35  Score=289.89  Aligned_cols=373  Identities=19%  Similarity=0.210  Sum_probs=306.5

Q ss_pred             CCChhhHHHHhhhccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHH
Q 011328           17 PMDPMFFIIQLQLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAW   96 (488)
Q Consensus        17 ~~~~~~~~~~~~~~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~   96 (488)
                      |-+.-++.     +.+|.+++.|.++++.++..|+++|.+++... .+....+++.|++|.|+++|++++ ++++..|++
T Consensus        40 ~~~~~~~~-----~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~-~~~k~~V~~~G~Ip~LV~LL~s~~-~~vq~~Aa~  112 (584)
T 3l6x_A           40 PPPPNWRQ-----PELPEVIAMLGFRLDAVKSNAAAYLQHLCYRN-DKVKTDVRKLKGIPVLVGLLDHPK-KEVHLGACG  112 (584)
T ss_dssp             CCCCCCCC-----CCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC-HHHHHHHHHTTHHHHHHHGGGCSS-HHHHHHHHH
T ss_pred             CCCCCccc-----ccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHcCCcHHHHHHHCCCC-HHHHHHHHH
Confidence            33444555     88999999999999999999999999987654 677888899999999999999998 999999999


Q ss_pred             HHHHhcCC-CchhhHHHHhCCCHHHHHHhhCC-CCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhc------
Q 011328           97 ALTNIASG-TSENTRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN------  168 (488)
Q Consensus        97 ~L~~l~~~-~~~~~~~~~~~g~i~~L~~~L~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~------  168 (488)
                      +|.||+.+ +++++..+++.|+|+.|+++|++ .+.++++.++++|++|+.. +..+..+.+ ++++.|++++.      
T Consensus       113 AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~-~~~k~~I~~-~alp~Lv~LL~~p~sg~  190 (584)
T 3l6x_A          113 ALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSH-DSIKMEIVD-HALHALTDEVIIPHSGW  190 (584)
T ss_dssp             HHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTS-GGGHHHHHH-HTHHHHHHHTHHHHHCC
T ss_pred             HHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC-chhhHHHHh-ccHHHHHHHHhcccccc
Confidence            99999985 68999999999999999999997 6889999999999999985 456777775 57999999872      


Q ss_pred             -----------ccccHhHHHHHHHHHHHhhcCCCC-CChhh-hhchHHHHHHhhcc------CChhHHHHHHHHHHHhcc
Q 011328          169 -----------EHAKLSMLRNATWTLSNFCRGKPQ-PLFEQ-TRPALPALERLIHS------NDDEVLTDACWALSYLSD  229 (488)
Q Consensus       169 -----------~~~~~~v~~~a~~~L~~l~~~~~~-~~~~~-~~~~~~~l~~ll~~------~~~~v~~~al~~L~~l~~  229 (488)
                                 ...++.++.+|+++|.||+...+. ...+. ..|+++.|+.++++      .+...++.++++|.|++.
T Consensus       191 ~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~  270 (584)
T 3l6x_A          191 EREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSY  270 (584)
T ss_dssp             C----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHT
T ss_pred             cccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhc
Confidence                       123578999999999999987633 33333 36778899999874      467899999999999986


Q ss_pred             CCch-------------------------hHHHHHHhCCHHHHHHhcC-CCCcchHhHHHHHHhHhhcCCch----hhHH
Q 011328          230 GTND-------------------------KIQAVIEAGVCPRLVELLR-HPSPSVLIPALRTVGNIVTGDDM----QTQC  279 (488)
Q Consensus       230 ~~~~-------------------------~~~~~~~~~~l~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~----~~~~  279 (488)
                      ....                         ..+.+.+.++++.++.+|. +.++.+++.|+++|.|++.+...    ....
T Consensus       271 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~  350 (584)
T 3l6x_A          271 QVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSA  350 (584)
T ss_dssp             THHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHH
T ss_pred             cccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHH
Confidence            5210                         1111223345677788885 46789999999999999986532    2223


Q ss_pred             HhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC--------ChhHHHHHHHHH
Q 011328          280 IINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA--------EFEIKKEAAWAI  351 (488)
Q Consensus       280 ~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~--------~~~v~~~a~~aL  351 (488)
                      +.+.++++.|+.+|.++ +..+++.|+|+|+|++.+.. .. ..+..|+++.|+++|.++        +.+++..|+++|
T Consensus       351 v~~~~glp~Lv~LL~s~-~~~v~~~A~~aL~nLs~~~~-~~-~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL  427 (584)
T 3l6x_A          351 LRQEKALSAIADLLTNE-HERVVKAASGALRNLAVDAR-NK-ELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTI  427 (584)
T ss_dssp             HTSHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHTTCS-CH-HHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHH
T ss_pred             HHHcCcHHHHHHHHcCC-CHHHHHHHHHHHHHHhCChh-HH-HHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHH
Confidence            44578899999999999 88999999999999998632 22 345788999999999886        357889999999


Q ss_pred             HHhccCCCHHHHHHHHHCCChHHHHhhcCCC--CHHHHHHHHHHHHHHHHhhh
Q 011328          352 SNATSGGSNEQIKFLVSQGCIKPLCDLLNCP--DPRIVTVCLEGLENILKAGE  402 (488)
Q Consensus       352 ~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~al~~L~~l~~~~~  402 (488)
                      .|++.. ++++.+.+.+.|+++.|++++++.  .+.+++.|..+|.+++...+
T Consensus       428 ~NL~a~-~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~~e  479 (584)
T 3l6x_A          428 NEVIAE-NLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKE  479 (584)
T ss_dssp             HHHHTT-CHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTSHH
T ss_pred             HHHhcC-CHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcCHH
Confidence            999864 578899999999999999999986  78999999999999987655

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=100.00  E-value=1.4e-34  Score=284.81  Aligned_cols=367  Identities=18%  Similarity=0.216  Sum_probs=304.0

Q ss_pred             HcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCC-Cch
Q 011328           71 QSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGD-SPK  149 (488)
Q Consensus        71 ~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~-~~~  149 (488)
                      ..+.++.|+++|.+++ ++++..|+++|.+++..+++++..+++.|+|+.|+++|+++++++++.|+++|.||+.+ +++
T Consensus        46 ~~~~i~~LV~~L~s~~-~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~  124 (584)
T 3l6x_A           46 RQPELPEVIAMLGFRL-DAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQD  124 (584)
T ss_dssp             CCCCHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHH
T ss_pred             ccccHHHHHHHHCCCC-HHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHH
Confidence            4678999999999998 99999999999999988999999999999999999999999999999999999999985 577


Q ss_pred             hHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhc------------------c
Q 011328          150 CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH------------------S  211 (488)
Q Consensus       150 ~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~------------------~  211 (488)
                      .+..+.+.|++++|+.+|....+..+++.++++|++|+.....+.... .+++|.|++++.                  .
T Consensus       125 nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~-~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~  203 (584)
T 3l6x_A          125 NKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIV-DHALHALTDEVIIPHSGWEREPNEDCKPRHI  203 (584)
T ss_dssp             HHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHH-HHTHHHHHHHTHHHHHCCC----------CC
T ss_pred             HHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHH-hccHHHHHHHHhccccccccccccccccccc
Confidence            899999999999999999555678899999999999998654333333 678999999872                  2


Q ss_pred             CChhHHHHHHHHHHHhccCCchhHHHHHHh-CCHHHHHHhcCC------CCcchHhHHHHHHhHhhcCCch---------
Q 011328          212 NDDEVLTDACWALSYLSDGTNDKIQAVIEA-GVCPRLVELLRH------PSPSVLIPALRTVGNIVTGDDM---------  275 (488)
Q Consensus       212 ~~~~v~~~al~~L~~l~~~~~~~~~~~~~~-~~l~~L~~lL~~------~~~~v~~~a~~~L~~l~~~~~~---------  275 (488)
                      .+..++..+.++|.|++..+++..+.+.+. |+++.|+.++++      .+...++.|+++|.||+.....         
T Consensus       204 ~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~  283 (584)
T 3l6x_A          204 EWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQ  283 (584)
T ss_dssp             CCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--
T ss_pred             ccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhh
Confidence            357999999999999999887766777775 566799998864      4567889999999999975211         


Q ss_pred             ----------------hhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCH---HHHH-HHHHcCChHHHHHH
Q 011328          276 ----------------QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNV---NQIQ-AIIEAGIIGPLVNL  335 (488)
Q Consensus       276 ----------------~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~---~~~~-~l~~~~~l~~L~~l  335 (488)
                                      ....+.+.++++.++.+|.+..++.+++.|+++|.||+.+..   ...+ .+.+.++++.|+.+
T Consensus       284 ~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~L  363 (584)
T 3l6x_A          284 EAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADL  363 (584)
T ss_dssp             ------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHG
T ss_pred             hhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHH
Confidence                            112223445577889999755488999999999999988642   2223 33456789999999


Q ss_pred             HhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCC--------CHHHHHHHHHHHHHHHHhhhhhhcc
Q 011328          336 LLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCP--------DPRIVTVCLEGLENILKAGEAEKNM  407 (488)
Q Consensus       336 l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~--------~~~v~~~al~~L~~l~~~~~~~~~~  407 (488)
                      |.+++..++..|+++|.||+....  ... .+..|+++.|+++|.++        ..+++..++++|.|++...+.    
T Consensus       364 L~s~~~~v~~~A~~aL~nLs~~~~--~~~-~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~----  436 (584)
T 3l6x_A          364 LTNEHERVVKAASGALRNLAVDAR--NKE-LIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLE----  436 (584)
T ss_dssp             GGCSCHHHHHHHHHHHHHHHTTCS--CHH-HHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHH----
T ss_pred             HcCCCHHHHHHHHHHHHHHhCChh--HHH-HHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHH----
Confidence            999999999999999999998653  223 34679999999999976        357889999999999866543    


Q ss_pred             CCCCccchHHHHHHhhccHHHHHHhhcCC--CHHHHHHHHHHHHHhcCC
Q 011328          408 GNTGGVNLFAQAIDDAEGLEKIENLQSHD--NTEIYEKAVKILETYWVE  454 (488)
Q Consensus       408 ~~~~~~~~~~~~l~~~g~~~~L~~l~~~~--~~~v~~~a~~~l~~~~~~  454 (488)
                              ....+.+.|+++.|.+++.+.  ++++++.|..+|.++|..
T Consensus       437 --------~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~  477 (584)
T 3l6x_A          437 --------AAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGY  477 (584)
T ss_dssp             --------HHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTS
T ss_pred             --------HHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcC
Confidence                    366788999999999998775  899999999999999864

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=100.00  E-value=9.7e-35  Score=280.17  Aligned_cols=338  Identities=17%  Similarity=0.175  Sum_probs=282.5

Q ss_pred             hhcCCCC-ChhhHHHHhhhccHHHHHHHhcCC------------CHHHHHHHHHHHHHHhccCCCccHHHHHHcCCH---
Q 011328           12 FSLLKPM-DPMFFIIQLQLESLPAMVAGVWSD------------DRNIQLDATTQFRKLLSIERSPPINEVIQSGVV---   75 (488)
Q Consensus        12 ~~~~~~~-~~~~~~~~~~~~~i~~l~~~L~s~------------~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i---   75 (488)
                      ++-..|+ ..+++.     |.+|.|+++|+..            +++++.+|+++|.+++++. ++..+...+.+++   
T Consensus        56 ~~~~~~~~~~~~~~-----g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~-~~~~~~~~~~~~~~~l  129 (458)
T 3nmz_A           56 MSSSQDSCISMRQS-----GCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQ-PDDKRGRREIRVLHLL  129 (458)
T ss_dssp             HHSSTTHHHHHHHH-----TCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHS-CSCHHHHHHHHHHHHH
T ss_pred             HHcCCcHHHHHHHC-----CCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccC-cchhHHHHHHHHHHHH
Confidence            3334444 345666     9999999999963            3799999999999999987 6777777777777   


Q ss_pred             -------HHHHHhhcCCC-Chh-----HHH-------HHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCC--------
Q 011328           76 -------PRFIEFLSRDD-FPQ-----LQF-------EAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS--------  127 (488)
Q Consensus        76 -------~~L~~lL~~~~-~~~-----v~~-------~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~--------  127 (488)
                             +.+++++.+.. +.+     +++       +|+++|.|++. ++++|+.+++.|+++.|+.+|..        
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~-~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~  208 (458)
T 3nmz_A          130 EQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSF-DEEHRHAMNELGGLQAIAELLQVDCEMYGLT  208 (458)
T ss_dssp             HHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHHHHHHHHHSTTC
T ss_pred             HHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcC-CHHHHHHHHHCCCHHHHHHHHhhhhcccccc
Confidence                   66777776642 122     444       99999999987 69999999999999999999942        


Q ss_pred             ---CCHHHHHHHHHHHhhhhCCCchhHHHHHh-cCChHHHHHHhcccccHhHHHHHHHHHHHhhcCC--CCCChhhhhch
Q 011328          128 ---PTDDVREQAVWALGNVAGDSPKCRDLVLS-NGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK--PQPLFEQTRPA  201 (488)
Q Consensus       128 ---~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~--~~~~~~~~~~~  201 (488)
                         .++.++..|+|+|.||+.+++..+..+.. .|.++.|+.+| .+.++.++..++|+|.+|+...  ..+......|+
T Consensus       209 ~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL-~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~Ga  287 (458)
T 3nmz_A          209 NDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQL-KSESEDLQQVIASVLRNLSWRADVNSKKTLREVGS  287 (458)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGG-GCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTH
T ss_pred             cCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHH-hCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCC
Confidence               34779999999999999888766666654 45699999999 6788999999999999999852  23344556799


Q ss_pred             HHHHHHhh-ccCChhHHHHHHHHHHHhccCCchhHHHHH-HhCCHHHHHHhcCCCCc----chHhHHHHHHhHhhc---C
Q 011328          202 LPALERLI-HSNDDEVLTDACWALSYLSDGTNDKIQAVI-EAGVCPRLVELLRHPSP----SVLIPALRTVGNIVT---G  272 (488)
Q Consensus       202 ~~~l~~ll-~~~~~~v~~~al~~L~~l~~~~~~~~~~~~-~~~~l~~L~~lL~~~~~----~v~~~a~~~L~~l~~---~  272 (488)
                      +|.|+++| ++.+..++..++.+|+|++...++....+. ..|+++.|+.+|.+.++    +++..|+++|.+++.   .
T Consensus       288 I~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~  367 (458)
T 3nmz_A          288 VKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIAT  367 (458)
T ss_dssp             HHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccC
Confidence            99999975 557899999999999999984434444455 68999999999988655    389999999999996   6


Q ss_pred             CchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHH
Q 011328          273 DDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAIS  352 (488)
Q Consensus       273 ~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~  352 (488)
                      ++..++.+.+.|+++.|+.+|.++ +..+++.|+|+|+|++.++++.+..+++.|+++.|+.++.+++..+++.|+++|.
T Consensus       368 ~~~~~~~i~~~G~i~~Lv~LL~~~-~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~  446 (458)
T 3nmz_A          368 NEDHRQILRENNCLQTLLQHLKSH-SLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALR  446 (458)
T ss_dssp             CHHHHHHHHHTTHHHHHHHHSSCS-CHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHcccHHHHHHHHcCC-ChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHH
Confidence            788888899999999999999998 8899999999999999888999999999999999999999999999999999999


Q ss_pred             HhccCC
Q 011328          353 NATSGG  358 (488)
Q Consensus       353 ~l~~~~  358 (488)
                      |++.+.
T Consensus       447 nL~~~~  452 (458)
T 3nmz_A          447 NLMANR  452 (458)
T ss_dssp             HHHTCC
T ss_pred             HHHcCC
Confidence            999764

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=100.00  E-value=8.4e-34  Score=286.04  Aligned_cols=403  Identities=16%  Similarity=0.136  Sum_probs=339.9

Q ss_pred             ccHHHHHHHhcC-CCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchh
Q 011328           30 ESLPAMVAGVWS-DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN  108 (488)
Q Consensus        30 ~~i~~l~~~L~s-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~  108 (488)
                      +.++.+++.|.+ +++.++..|+.+|.++...  .+....+.+.|+++.|+++|++++ +.++..|+++|.+++..+++.
T Consensus        59 ~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~--~~~~~~i~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~  135 (529)
T 1jdh_A           59 QMVSAIVRTMQNTNDVETARCTAGTLHNLSHH--REGLLAIFKSGGIPALVKMLGSPV-DSVLFYAITTLHNLLLHQEGA  135 (529)
T ss_dssp             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS--HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHCTTH
T ss_pred             chHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC--chhHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCcch
Confidence            789999999975 5899999999999997553  457788889999999999999998 999999999999999976788


Q ss_pred             hHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhc
Q 011328          109 TRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR  188 (488)
Q Consensus       109 ~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~  188 (488)
                      +..+.+.|+++.|++++.+++++++..++.+|.+++..+++.+..+.+.|+++.++.++....+...+..++.+|.+++.
T Consensus       136 ~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~  215 (529)
T 1jdh_A          136 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV  215 (529)
T ss_dssp             HHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhc
Confidence            88888999999999999999999999999999999998888888999999999999999666667788889999999998


Q ss_pred             CCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhH
Q 011328          189 GKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN  268 (488)
Q Consensus       189 ~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~  268 (488)
                      ...........++++.++.++.++++.++..++++|.+++...+...   ...++++.|++++.+++++++..++++|++
T Consensus       216 ~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~---~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~  292 (529)
T 1jdh_A          216 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE---GMEGLLGTLVQLLGSDDINVVTCAAGILSN  292 (529)
T ss_dssp             STTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCS---CCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             CcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhH---HHHhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            66555555567999999999999999999999999999997654321   123788999999999999999999999999


Q ss_pred             hhcCCchhhHHHhhCCChHHHHHHhcccc-hhhHHHHHHHHHHHHhcCCHH---HHHHHHHcCChHHHHHHHhcCC-hhH
Q 011328          269 IVTGDDMQTQCIINHQALPCLLDLLTQNY-KKSIKKEACWTISNITAGNVN---QIQAIIEAGIIGPLVNLLLNAE-FEI  343 (488)
Q Consensus       269 l~~~~~~~~~~~~~~~~~~~L~~lL~~~~-~~~v~~~a~~~L~nl~~~~~~---~~~~l~~~~~l~~L~~ll~~~~-~~v  343 (488)
                      ++..++.....+.+.++++.+++++.+.. ++.++..|+++|+|++.++++   .+..+.+.|+++.|++++.+++ +.+
T Consensus       293 L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v  372 (529)
T 1jdh_A          293 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPL  372 (529)
T ss_dssp             HTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHH
T ss_pred             HhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHH
Confidence            99987778888899999999999998642 378999999999999885332   4567888999999999999886 599


Q ss_pred             HHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHH----------------------HHHhh
Q 011328          344 KKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLEN----------------------ILKAG  401 (488)
Q Consensus       344 ~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~----------------------l~~~~  401 (488)
                      +..++++|.|++...  +....+.+.|+++.|++++++++++++..+.+++.+                      +....
T Consensus       373 ~~~a~~~l~nl~~~~--~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~~~  450 (529)
T 1jdh_A          373 IKATVGLIRNLALCP--ANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDV  450 (529)
T ss_dssp             HHHHHHHHHHHTTSG--GGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTTSH
T ss_pred             HHHHHHHHHHHhcCh--hhhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhccccHHHHHHHHHHHHHHHhcCc
Confidence            999999999999754  445788899999999999987777776655555444                      43221


Q ss_pred             hhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 011328          402 EAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWV  453 (488)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~~~~~v~~~a~~~l~~~~~  453 (488)
                      +             .+..+.+.|+++.|..+..+++++++..|...+.++..
T Consensus       451 ~-------------~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~  489 (529)
T 1jdh_A          451 H-------------NRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ  489 (529)
T ss_dssp             H-------------HHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTT
T ss_pred             h-------------HHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhc
Confidence            1             35678889999999999999999999999999998864

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=100.00  E-value=6.1e-33  Score=285.36  Aligned_cols=403  Identities=16%  Similarity=0.152  Sum_probs=345.7

Q ss_pred             ccHHHHHHHhcCC-CHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchh
Q 011328           30 ESLPAMVAGVWSD-DRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN  108 (488)
Q Consensus        30 ~~i~~l~~~L~s~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~  108 (488)
                      +.++.|++.|.++ +++++..|+.+|.++...  .+....+.+.|+++.|+++|++++ +.++..|+++|.+++...+..
T Consensus        56 ~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~--~~~~~~i~~~g~i~~Lv~lL~~~~-~~v~~~A~~aL~nL~~~~~~~  132 (644)
T 2z6h_A           56 QMVSAIVRTMQNTNDVETARCTAGTLHNLSHH--REGLLAIFKSGGIPALVKMLGSPV-DSVLFYAITTLHNLLLHQEGA  132 (644)
T ss_dssp             HHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTS--HHHHHHHHTTTHHHHHHHHTTCSS-HHHHHHHHHHHHHHHHHSTTH
T ss_pred             ChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC--hhhHHHHHHcCCHHHHHHHHhCCC-HHHHHHHHHHHHHHHhCcchh
Confidence            6799999999864 899999999999986554  357788888999999999999998 999999999999999866778


Q ss_pred             hHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhc
Q 011328          109 TRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR  188 (488)
Q Consensus       109 ~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~  188 (488)
                      +..+.+.|+++.|+++|+++++.++..++.+|.+++...++.+..+.+.|+++.|+.++.......++..++.+|.+++.
T Consensus       133 ~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~  212 (644)
T 2z6h_A          133 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV  212 (644)
T ss_dssp             HHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhc
Confidence            88888999999999999999999999999999999987788888999999999999999666667888999999999998


Q ss_pred             CCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhH
Q 011328          189 GKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN  268 (488)
Q Consensus       189 ~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~  268 (488)
                      ...........++++.++.++.+.+..++..++++|.+++...+.. .  ...++++.|+.++.++++.++..|+++|++
T Consensus       213 ~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~-~--~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~  289 (644)
T 2z6h_A          213 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ-E--GMEGLLGTLVQLLGSDDINVVTCAAGILSN  289 (644)
T ss_dssp             CTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTC-C--SCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             CcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhh-h--hhhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            7655556666799999999999999999999999999999764332 1  112678999999999999999999999999


Q ss_pred             hhcCCchhhHHHhhCCChHHHHHHhcccch-hhHHHHHHHHHHHHhcCCH---HHHHHHHHcCChHHHHHHHhcCC-hhH
Q 011328          269 IVTGDDMQTQCIINHQALPCLLDLLTQNYK-KSIKKEACWTISNITAGNV---NQIQAIIEAGIIGPLVNLLLNAE-FEI  343 (488)
Q Consensus       269 l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~-~~v~~~a~~~L~nl~~~~~---~~~~~l~~~~~l~~L~~ll~~~~-~~v  343 (488)
                      ++..++..+..+.+.++++.|+.++.+..+ +.++..|+++|+|++..++   .....+.+.|+++.|+++|.+++ +.+
T Consensus       290 L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v  369 (644)
T 2z6h_A          290 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPL  369 (644)
T ss_dssp             HHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHH
T ss_pred             HHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHH
Confidence            999877788888899999999999987523 7999999999999997433   23344778899999999999874 699


Q ss_pred             HHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCC----------------------HHHHHHHHHHHHHHHHhh
Q 011328          344 KKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPD----------------------PRIVTVCLEGLENILKAG  401 (488)
Q Consensus       344 ~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~----------------------~~v~~~al~~L~~l~~~~  401 (488)
                      +..|+++|.|++...  +....+.+.|+++.|++++.+.+                      .+++..++.+|.++....
T Consensus       370 ~~~a~~~L~nLa~~~--~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~~  447 (644)
T 2z6h_A          370 IKATVGLIRNLALCP--ANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDV  447 (644)
T ss_dssp             HHHHHHHHHHHTTSG--GGHHHHHHTTHHHHHHHHHHHHHHHHTTC----------CCSSCHHHHHHHHHHHHHHHTTSH
T ss_pred             HHHHHHHHHHHccCH--HHHHHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhcCH
Confidence            999999999999754  34478889999999999987633                      456677788888777543


Q ss_pred             hhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 011328          402 EAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWV  453 (488)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~~~~~v~~~a~~~l~~~~~  453 (488)
                      .             .+..+.+.|+++.|.+++.+.+++++..|...+.++..
T Consensus       448 ~-------------~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~  486 (644)
T 2z6h_A          448 H-------------NRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ  486 (644)
T ss_dssp             H-------------HHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred             H-------------HHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence            2             36778889999999999999999999999999888764

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=100.00  E-value=2.1e-32  Score=285.54  Aligned_cols=402  Identities=16%  Similarity=0.158  Sum_probs=342.6

Q ss_pred             ccHHHHHHHhcC-CCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchh
Q 011328           30 ESLPAMVAGVWS-DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN  108 (488)
Q Consensus        30 ~~i~~l~~~L~s-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~  108 (488)
                      +.++.|++.|++ +++.++..|+.+|.++...  .+....+.+.|+++.|+++|++++ +.++..|+++|.+++...++.
T Consensus       192 ~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~--~~~~~~i~~~g~I~~Lv~lL~~~~-~~v~~~A~~aL~nLa~~~~~~  268 (780)
T 2z6g_A          192 QMVSAIVRTMQNTNDVETARCTSGTLHNLSHH--REGLLAIFKSGGIPALVNMLGSPV-DSVLFHAITTLHNLLLHQEGA  268 (780)
T ss_dssp             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS--HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHSTTH
T ss_pred             ChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC--chhHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhCCChhh
Confidence            679999999985 4899999999999996654  355777888999999999999998 999999999999999977788


Q ss_pred             hHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhc
Q 011328          109 TRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR  188 (488)
Q Consensus       109 ~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~  188 (488)
                      +..+.+.|+++.|+.++.+++..++..++.+|.+++..+++.+..+.+.++++.|+.++........+..++.+|.+++.
T Consensus       269 ~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~  348 (780)
T 2z6g_A          269 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV  348 (780)
T ss_dssp             HHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhc
Confidence            88888999999999999999999999999999999988788888888999999999999666566677889999999997


Q ss_pred             CCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhH
Q 011328          189 GKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN  268 (488)
Q Consensus       189 ~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~  268 (488)
                      ...........++++.|+.++.+.+..++..++++|.+++......   ....++++.|+.++.+.++.++..|+++|++
T Consensus       349 ~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~---~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~  425 (780)
T 2z6g_A          349 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSN  425 (780)
T ss_dssp             STTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC---SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            6555455556789999999999999999999999999999765432   1123678999999999999999999999999


Q ss_pred             hhcCCchhhHHHhhCCChHHHHHHhcccch-hhHHHHHHHHHHHHhcCCHH---HHHHHHHcCChHHHHHHHhcCCh-hH
Q 011328          269 IVTGDDMQTQCIINHQALPCLLDLLTQNYK-KSIKKEACWTISNITAGNVN---QIQAIIEAGIIGPLVNLLLNAEF-EI  343 (488)
Q Consensus       269 l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~-~~v~~~a~~~L~nl~~~~~~---~~~~l~~~~~l~~L~~ll~~~~~-~v  343 (488)
                      ++..++..+..+.+.++++.|+.+|.+..+ ..++..|+++|+|++..+++   ....+...++++.|++++.+++. .+
T Consensus       426 L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v  505 (780)
T 2z6g_A          426 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPL  505 (780)
T ss_dssp             HTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHH
T ss_pred             HHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHH
Confidence            999888888888899999999999987423 38999999999999874333   34567788999999999998864 99


Q ss_pred             HHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCC----------------------HHHHHHHHHHHHHHHHhh
Q 011328          344 KKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPD----------------------PRIVTVCLEGLENILKAG  401 (488)
Q Consensus       344 ~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~----------------------~~v~~~al~~L~~l~~~~  401 (488)
                      +..|+++|+|++..  ++....+.+.|+++.|++++.+.+                      ++++..++.+|.++....
T Consensus       506 ~~~A~~aL~nLa~~--~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~  583 (780)
T 2z6g_A          506 IKATVGLIRNLALC--PANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDI  583 (780)
T ss_dssp             HHHHHHHHHHHHSS--HHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTSH
T ss_pred             HHHHHHHHHHHhcC--HHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcCh
Confidence            99999999999974  455678889999999999987543                      346677888888876432


Q ss_pred             hhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 011328          402 EAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYW  452 (488)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~~~~~v~~~a~~~l~~~~  452 (488)
                      .             .+..+.+.|+++.|..++.+++++++..|...+.++.
T Consensus       584 ~-------------~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~  621 (780)
T 2z6g_A          584 H-------------NRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELA  621 (780)
T ss_dssp             H-------------HHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred             h-------------hHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence            1             3667888999999999999999999999999888775

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=99.97  E-value=1.5e-29  Score=237.13  Aligned_cols=269  Identities=19%  Similarity=0.193  Sum_probs=234.1

Q ss_pred             hhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCC-----------CCHHHHHHHHHHHhhhhCCCchhHHHHHh
Q 011328           88 PQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSS-----------PTDDVREQAVWALGNVAGDSPKCRDLVLS  156 (488)
Q Consensus        88 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~-----------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~  156 (488)
                      ...+..|+++|.+++. ++++|..+++.|+++.|+.+|..           .++.++..|+|+|.|++.+++..+..+..
T Consensus        46 ~~~~~~A~~aL~nls~-d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~  124 (354)
T 3nmw_A           46 EHQICPAVCVLMKLSF-DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCS  124 (354)
T ss_dssp             GGTHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcC-CHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            4566689999999999 68999999999999999999942           34789999999999999888766776654


Q ss_pred             -cCChHHHHHHhcccccHhHHHHHHHHHHHhhcCC--CCCChhhhhchHHHHHHhh-ccCChhHHHHHHHHHHHhccCCc
Q 011328          157 -NGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK--PQPLFEQTRPALPALERLI-HSNDDEVLTDACWALSYLSDGTN  232 (488)
Q Consensus       157 -~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~--~~~~~~~~~~~~~~l~~ll-~~~~~~v~~~al~~L~~l~~~~~  232 (488)
                       .|+++.|+.+| ++.++.++..++|+|.+|+...  ..+......|++|.|+++| ++.+..+++.++.+|++++...+
T Consensus       125 ~~GaIp~LV~LL-~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~  203 (354)
T 3nmw_A          125 MKGCMRALVAQL-KSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCT  203 (354)
T ss_dssp             CHHHHHHHHHGG-GCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCH
T ss_pred             cCCcHHHHHHHH-CCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccCh
Confidence             45699999999 7788999999999999999852  2344455679999999975 56789999999999999998554


Q ss_pred             hhHHHHH-HhCCHHHHHHhcCCCCc----chHhHHHHHHhHhhc---CCchhhHHHhhCCChHHHHHHhcccchhhHHHH
Q 011328          233 DKIQAVI-EAGVCPRLVELLRHPSP----SVLIPALRTVGNIVT---GDDMQTQCIINHQALPCLLDLLTQNYKKSIKKE  304 (488)
Q Consensus       233 ~~~~~~~-~~~~l~~L~~lL~~~~~----~v~~~a~~~L~~l~~---~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~  304 (488)
                      +....+. ..|+++.|+.+|.++++    ++++.|+++|.+++.   .++..++.+.+.|+++.|+.+|.++ +..+++.
T Consensus       204 ~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~v~~~  282 (354)
T 3nmw_A          204 ENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSH-SLTIVSN  282 (354)
T ss_dssp             HHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCS-CHHHHHH
T ss_pred             hhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCC-ChHHHHH
Confidence            4445565 68999999999988654    489999999999997   5778888899999999999999998 8899999


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCC
Q 011328          305 ACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGS  359 (488)
Q Consensus       305 a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~  359 (488)
                      |+|+|+|++.++++.++.+.+.|+++.|++++.+++..+++.|+++|.|++....
T Consensus       283 A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~  337 (354)
T 3nmw_A          283 ACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRP  337 (354)
T ss_dssp             HHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCH
Confidence            9999999998889999999999999999999999999999999999999998754

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=99.96  E-value=1.9e-28  Score=229.67  Aligned_cols=274  Identities=19%  Similarity=0.183  Sum_probs=236.3

Q ss_pred             CCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcc----------cccHhHHHHHHHHHHHhhcCCC-CCChh
Q 011328          128 PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE----------HAKLSMLRNATWTLSNFCRGKP-QPLFE  196 (488)
Q Consensus       128 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~----------~~~~~v~~~a~~~L~~l~~~~~-~~~~~  196 (488)
                      +.......|+++|.+++.+ +++|+.+.+.|++++|+.+|..          ..++.++..|+|+|.+++.+.+ .+...
T Consensus        44 ~~~~~~~~A~~aL~nls~d-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i  122 (354)
T 3nmw_A           44 PVEHQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATL  122 (354)
T ss_dssp             GGGGTHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            4456667899999999988 6789999999999999999942          2357799999999999998764 32223


Q ss_pred             h-hhchHHHHHHhhccCChhHHHHHHHHHHHhccC-CchhHHHHHHhCCHHHHHHhc-CCCCcchHhHHHHHHhHhhcCC
Q 011328          197 Q-TRPALPALERLIHSNDDEVLTDACWALSYLSDG-TNDKIQAVIEAGVCPRLVELL-RHPSPSVLIPALRTVGNIVTGD  273 (488)
Q Consensus       197 ~-~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~-~~~~~~~~~~~~~l~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~  273 (488)
                      . ..|++|.|+.+|++++++++..++++|.+++.. ++.....+.+.|+++.|+++| .+.++.+++.|+.+|++++..+
T Consensus       123 ~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~  202 (354)
T 3nmw_A          123 CSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHC  202 (354)
T ss_dssp             HHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTC
T ss_pred             HHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccC
Confidence            2 456799999999999999999999999999975 455667788999999999975 6678899999999999999866


Q ss_pred             chhhHHHh-hCCChHHHHHHhcccchh---hHHHHHHHHHHHHhc---CCHHHHHHHHHcCChHHHHHHHhcCChhHHHH
Q 011328          274 DMQTQCII-NHQALPCLLDLLTQNYKK---SIKKEACWTISNITA---GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKE  346 (488)
Q Consensus       274 ~~~~~~~~-~~~~~~~L~~lL~~~~~~---~v~~~a~~~L~nl~~---~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~  346 (488)
                      +.....+. ..|+++.|+.+|.++.+.   .+++.|+++|.|++.   .+++.++.+.+.|+++.|+.+|.+++..+++.
T Consensus       203 ~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~  282 (354)
T 3nmw_A          203 TENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSN  282 (354)
T ss_dssp             HHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHH
T ss_pred             hhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHH
Confidence            55555565 789999999999876222   599999999999997   67899999999999999999999999999999


Q ss_pred             HHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhh
Q 011328          347 AAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEA  403 (488)
Q Consensus       347 a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~  403 (488)
                      |+++|.|++.. +++....+.+.|+++.|+++++++++++++.++++|.+++...+.
T Consensus       283 A~~aL~nLa~~-~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~  338 (354)
T 3nmw_A          283 ACGTLWNLSAR-NPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPA  338 (354)
T ss_dssp             HHHHHHHHTSS-CHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCG
T ss_pred             HHHHHHHHhCC-CHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHH
Confidence            99999999864 578889999999999999999999999999999999999976543

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.95  E-value=2.7e-26  Score=207.82  Aligned_cols=244  Identities=27%  Similarity=0.406  Sum_probs=223.7

Q ss_pred             hccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchh
Q 011328           29 LESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN  108 (488)
Q Consensus        29 ~~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~  108 (488)
                      ++.++.|++.|++++++++..|+++|.+++... .+....+++.|+++.|+++|++++ ++++..|+++|.+++..+++.
T Consensus         1 ~~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~g~i~~L~~ll~~~~-~~v~~~a~~~L~~l~~~~~~~   78 (252)
T 4hxt_A            1 MNDVEKLVKLLTSTDSETQKEAARDLAEIASGP-ASAIKAIVDAGGVEVLVKLLTSTD-SEVQKEAARALANIASGPDEA   78 (252)
T ss_dssp             CCHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHTTSCHHH
T ss_pred             CCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC-cHHHHHHHHCCCHHHHHHHHhCCC-HHHHHHHHHHHHHHHcCChHH
Confidence            367999999999999999999999999998765 467888889999999999999999 999999999999999977999


Q ss_pred             hHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhc
Q 011328          109 TRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR  188 (488)
Q Consensus       109 ~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~  188 (488)
                      +..+.+.|+++.|+.++++++++++..++++|++++...+..+..+.+.|+++.+++++ ++.++.++..++++|.+++.
T Consensus        79 ~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l-~~~~~~~~~~a~~~L~~l~~  157 (252)
T 4hxt_A           79 IKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLL-TSTDSEVQKEAARALANIAS  157 (252)
T ss_dssp             HHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHT-TCSCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHH-cCCCHHHHHHHHHHHHHHHc
Confidence            99999999999999999999999999999999999988888889999999999999999 77889999999999999998


Q ss_pred             CCCCC-ChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHh
Q 011328          189 GKPQP-LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVG  267 (488)
Q Consensus       189 ~~~~~-~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~  267 (488)
                      ..+.. ......++++.++.++.++++.++..++++|.+++..++...+.+.+.|+++.|+.++.++++.++..|+++|+
T Consensus       158 ~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~  237 (252)
T 4hxt_A          158 GPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALE  237 (252)
T ss_dssp             SCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHH
Confidence            75322 44555899999999999999999999999999999888888888999999999999999999999999999999


Q ss_pred             HhhcCCch
Q 011328          268 NIVTGDDM  275 (488)
Q Consensus       268 ~l~~~~~~  275 (488)
                      +++...+.
T Consensus       238 ~l~~~~~~  245 (252)
T 4hxt_A          238 NIKSGGWL  245 (252)
T ss_dssp             HHHHTCBC
T ss_pred             HHHcCCCc
Confidence            99986543

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.95  E-value=2.7e-26  Score=207.80  Aligned_cols=240  Identities=28%  Similarity=0.433  Sum_probs=222.3

Q ss_pred             CCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHH
Q 011328           73 GVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRD  152 (488)
Q Consensus        73 ~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~  152 (488)
                      |.++.|+++|++++ ++++..|+++|.+++...++.+..+.+.|+++.|++++++++++++..++++|++++.+++..+.
T Consensus         2 ~~i~~L~~~L~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~   80 (252)
T 4hxt_A            2 NDVEKLVKLLTSTD-SETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIK   80 (252)
T ss_dssp             CHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             CcHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHH
Confidence            57899999999999 99999999999999997888999999999999999999999999999999999999998888899


Q ss_pred             HHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCC-CCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCC
Q 011328          153 LVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGT  231 (488)
Q Consensus       153 ~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~  231 (488)
                      .+.+.|+++.++.++ +++++.++..++++|.+++... .........++++.++++++++++.++..++++|++++...
T Consensus        81 ~~~~~~~i~~l~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~  159 (252)
T 4hxt_A           81 AIVDAGGVEVLVKLL-TSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP  159 (252)
T ss_dssp             HHHHTTHHHHHHHHT-TCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHCCCHHHHHHHH-cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence            999999999999999 6788999999999999999654 33444555789999999999999999999999999999988


Q ss_pred             chhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHH
Q 011328          232 NDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISN  311 (488)
Q Consensus       232 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~n  311 (488)
                      +...+.+.+.|+++.|+.++.++++.++..|+++|++++..++.....+.+.|+++.++.+++++ ++.++..|+++|+|
T Consensus       160 ~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~  238 (252)
T 4hxt_A          160 DEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTST-DSEVQKEAQRALEN  238 (252)
T ss_dssp             HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCC-cHHHHHHHHHHHHH
Confidence            77778889999999999999999999999999999999998888888889999999999999998 89999999999999


Q ss_pred             HhcC
Q 011328          312 ITAG  315 (488)
Q Consensus       312 l~~~  315 (488)
                      ++..
T Consensus       239 l~~~  242 (252)
T 4hxt_A          239 IKSG  242 (252)
T ss_dssp             HHHT
T ss_pred             HHcC
Confidence            9974

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.95  E-value=3e-26  Score=207.58  Aligned_cols=239  Identities=37%  Similarity=0.575  Sum_probs=217.7

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh
Q 011328           30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT  109 (488)
Q Consensus        30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~  109 (488)
                      ..++.+++.|++++++++..|++.|.++++.. .+....+++.|+++.|+++|++++ ++++..|+++|.+++.++++.+
T Consensus        12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~-~~~~~~~~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~~   89 (252)
T 4db8_A           12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDG-NEQIQAVIDAGALPALVQLLSSPN-EQILQEALWALSNIASGGNEQI   89 (252)
T ss_dssp             CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHH-HHHHHHHHHTTHHHHHHHGGGCSC-HHHHHHHHHHHHHHTTSCHHHH
T ss_pred             chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC-CchHHHHHHcCcHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCHHHH
Confidence            56788999999999999999999999988863 677888899999999999999999 9999999999999999889999


Q ss_pred             HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcC
Q 011328          110 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG  189 (488)
Q Consensus       110 ~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~  189 (488)
                      ..+.+.|+++.|+.+++++++.++..|+++|++++.+.+.....+.+.|+++.++.++ ++.++.++..++++|.+++..
T Consensus        90 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~  168 (252)
T 4db8_A           90 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASG  168 (252)
T ss_dssp             HHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGG-GCSCHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHHHcC
Confidence            9999999999999999999999999999999999988775447888999999999999 777899999999999999986


Q ss_pred             CC-CCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhH
Q 011328          190 KP-QPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN  268 (488)
Q Consensus       190 ~~-~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~  268 (488)
                      .+ ........++++.++.++.++++.++..++++|++++..+++....+.+.|+++.|+.++.++++.++..|+++|++
T Consensus       169 ~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~  248 (252)
T 4db8_A          169 GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEK  248 (252)
T ss_dssp             CHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHT
T ss_pred             ChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            52 23334457999999999999999999999999999998888888888999999999999999999999999999999


Q ss_pred             hhc
Q 011328          269 IVT  271 (488)
Q Consensus       269 l~~  271 (488)
                      ++.
T Consensus       249 l~~  251 (252)
T 4db8_A          249 LQS  251 (252)
T ss_dssp             TC-
T ss_pred             Hhc
Confidence            975

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.94  E-value=2.3e-26  Score=208.33  Aligned_cols=239  Identities=35%  Similarity=0.556  Sum_probs=220.0

Q ss_pred             CCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHH
Q 011328           73 GVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRD  152 (488)
Q Consensus        73 ~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~  152 (488)
                      ..++.++++|++++ ++++..|+++|.++...+++.+..+++.|+++.|+++|+++++.++..|+++|++++.+++..+.
T Consensus        12 ~~~~~~~~~L~s~~-~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~   90 (252)
T 4db8_A           12 SELPQMTQQLNSDD-MQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ   90 (252)
T ss_dssp             CSHHHHHHHHHSSC-SSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             chHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence            56889999999999 89999999999887665778888999999999999999999999999999999999998888899


Q ss_pred             HHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCC-ChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCC
Q 011328          153 LVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQP-LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGT  231 (488)
Q Consensus       153 ~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~-~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~  231 (488)
                      .+.+.|+++.++.++ +++++.++..++++|.+++.+.+.. ......++++.++++++++++.++..++++|++++...
T Consensus        91 ~i~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~  169 (252)
T 4db8_A           91 AVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG  169 (252)
T ss_dssp             HHHHTTHHHHHHHGG-GCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHcCCHHHHHHHH-cCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence            999999999999999 6678999999999999999887544 55666899999999999999999999999999999888


Q ss_pred             chhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHH
Q 011328          232 NDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISN  311 (488)
Q Consensus       232 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~n  311 (488)
                      +.....+.+.|+++.|+.++.++++.++..|+++|++++..++.....+.+.|+++.++.++.++ ++.++..|+++|+|
T Consensus       170 ~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~A~~~L~~  248 (252)
T 4db8_A          170 NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHE-NEKIQKEAQEALEK  248 (252)
T ss_dssp             HHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCS-SSHHHHTHHHHHHT
T ss_pred             hHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence            77878888999999999999999999999999999999988888888889999999999999998 99999999999999


Q ss_pred             Hhc
Q 011328          312 ITA  314 (488)
Q Consensus       312 l~~  314 (488)
                      ++.
T Consensus       249 l~~  251 (252)
T 4db8_A          249 LQS  251 (252)
T ss_dssp             TC-
T ss_pred             Hhc
Confidence            974

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.93  E-value=2.3e-24  Score=196.57  Aligned_cols=236  Identities=16%  Similarity=0.159  Sum_probs=197.5

Q ss_pred             hhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHH-hcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHH
Q 011328          214 DEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVE-LLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDL  292 (488)
Q Consensus       214 ~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~-lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~l  292 (488)
                      .+-+..|+..|.+++...+ ....+.+.|+++.|+. +|.++++.++..|+++|++++.+++..+..+++.|+++.|+.+
T Consensus        54 ~e~k~~Al~~L~~lv~~~d-na~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~L  132 (296)
T 1xqr_A           54 QQEREGALELLADLCENMD-NAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL  132 (296)
T ss_dssp             HHHHHHHHHHHHHHHTSHH-HHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhChh-hHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence            3567788999999988654 4566888899999999 9999999999999999999999999888899999999999999


Q ss_pred             hcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCCh
Q 011328          293 LTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCI  372 (488)
Q Consensus       293 L~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i  372 (488)
                      |+++.+..++..|+|+|+|++.+++...+.+.+.|+++.|+.++.+++..++..|+|+|.+++.. +++.+..+.+.|++
T Consensus       133 L~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~-~~~~~~~vv~~g~i  211 (296)
T 1xqr_A          133 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVG-HPEHKGTLCSMGMV  211 (296)
T ss_dssp             HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHTTHH
T ss_pred             HccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC-ChHHHHHHHHcCCH
Confidence            98643788999999999999998888888899999999999999999999999999999999976 56788999999999


Q ss_pred             HHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCC-CHHHHHHHHHHHHHh
Q 011328          373 KPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHD-NTEIYEKAVKILETY  451 (488)
Q Consensus       373 ~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~~-~~~v~~~a~~~l~~~  451 (488)
                      +.|+.+|.+++++++..++.+|.+++...+....... ...+.+...+++     .+..++.++ +.++++++..++++|
T Consensus       212 ~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~-~~~~~l~~lL~~-----~~~~lq~~e~~~e~~~~~~~il~~~  285 (296)
T 1xqr_A          212 QQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECR-EPELGLEELLRH-----RCQLLQQHEEYQEELEFCEKLLQTC  285 (296)
T ss_dssp             HHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHH-CGGGCHHHHHHH-----HHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHh-ccHHHHHHHHHH-----HHHHccchHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999977443211000 011234555554     356667565 799999999999999


Q ss_pred             cCCCCC
Q 011328          452 WVEEDE  457 (488)
Q Consensus       452 ~~~~~~  457 (488)
                      |..+++
T Consensus       286 f~~~~~  291 (296)
T 1xqr_A          286 FSSPAD  291 (296)
T ss_dssp             CC----
T ss_pred             cCCCCC
Confidence            976544

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.92  E-value=2.6e-23  Score=207.48  Aligned_cols=399  Identities=15%  Similarity=0.135  Sum_probs=300.2

Q ss_pred             ccHHHHHHHhcCCC-HHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchh
Q 011328           30 ESLPAMVAGVWSDD-RNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN  108 (488)
Q Consensus        30 ~~i~~l~~~L~s~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~  108 (488)
                      |..+.+.+.+.+.. ..+.. ++..+.+.++.+  +..+..+..+.++.|.+++++   +.+|..|+-+|..+.......
T Consensus       255 ~~~~~l~~~~~~~~~~~~~~-a~L~lLsaACi~--~~cR~~I~~~~~~~L~~~l~~---~~ir~lAavvL~KL~~~~~~~  328 (778)
T 3opb_A          255 GLSKLFKKRVFEEQDLQFTK-ELLRLLSSACID--ETMRTYITENYLQLLERSLNV---EDVQIYSALVLVKTWSFTKLT  328 (778)
T ss_dssp             THHHHHHHHHHSSCCHHHHH-HHHHHHHHHCCS--HHHHHHHHHHHHHHHHHHTTS---GGGHHHHHHHHHHHTGGGTCT
T ss_pred             cHHHHHHHHHhcccchHHHH-HHHHHHHHHhCC--cHHHHHHHHhHHHHHHHHhcc---HHHHHHHHHHHHHHhcCCCCC
Confidence            55677777776544 44444 444444446654  455777778899999999965   588999999999988733221


Q ss_pred             hHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHh-cCChHHHHHHhcccccHhHHHHHHHHHHHhh
Q 011328          109 TRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLS-NGALMPLLAQFNEHAKLSMLRNATWTLSNFC  187 (488)
Q Consensus       109 ~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~  187 (488)
                      ...+.  ...+.+.++|.+++.+-+..|++.|+.++.+.. .++.+.+ .+++..|++++....+.++...++.+|.|++
T Consensus       329 ~~si~--~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~~~-VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt  405 (778)
T 3opb_A          329 CINLK--QLSEIFINAISRRIVPKVEMSVEALAYLSLKAS-VKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLS  405 (778)
T ss_dssp             TCCHH--HHHHHHHHHTTTCCHHHHHHHHHHHHHHTTSSH-HHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTT
T ss_pred             cCcHH--HHHHHHHHHHhcCCccHHHHHHHHHHHHhCCHH-HHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhc
Confidence            11111  246777778887776679999999999987655 5555544 4569999999954577889999999999999


Q ss_pred             cCCCCCC---------------------------------------hhhhhchHHHHHHhhccCChhHHHHHHHHHHHhc
Q 011328          188 RGKPQPL---------------------------------------FEQTRPALPALERLIHSNDDEVLTDACWALSYLS  228 (488)
Q Consensus       188 ~~~~~~~---------------------------------------~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~  228 (488)
                      .+.+...                                       .....|++|.|+.++.++++.++..++++|.+++
T Consensus       406 ~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS  485 (778)
T 3opb_A          406 TLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNIT  485 (778)
T ss_dssp             CCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHH
T ss_pred             CCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence            8653210                                       1123789999999999999999999999999999


Q ss_pred             cCCchhHHHHHHhCCHHHHHHhcCCCCcc---hHhHHHHHHhHhhcCCchhhHHHhh----CCChHHHHHHhcc-cchh-
Q 011328          229 DGTNDKIQAVIEAGVCPRLVELLRHPSPS---VLIPALRTVGNIVTGDDMQTQCIIN----HQALPCLLDLLTQ-NYKK-  299 (488)
Q Consensus       229 ~~~~~~~~~~~~~~~l~~L~~lL~~~~~~---v~~~a~~~L~~l~~~~~~~~~~~~~----~~~~~~L~~lL~~-~~~~-  299 (488)
                      ... +.+..+++.|+++.|+.++.+..+.   .+..|+.+|++++...+...  ++.    .++++.|+.+|.. +... 
T Consensus       486 ~d~-~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~--~f~~~~~~~aI~pLv~LL~~~~~~~~  562 (778)
T 3opb_A          486 RSK-NFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGL--IFKKYSALNAIPFLFELLPRSTPVDD  562 (778)
T ss_dssp             TSG-GGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHH--HSSSSCSTTHHHHHHHTSCCSSSCSS
T ss_pred             CCH-HHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHH--HcCCCccccchHHHHHHcCCCCCccc
Confidence            764 5557788999999999999886543   79999999999985443221  221    3889999999983 2111 


Q ss_pred             -----------hHHHHHHHHHHHHhcCC----HHHHHHHHHc-CChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHH
Q 011328          300 -----------SIKKEACWTISNITAGN----VNQIQAIIEA-GIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQI  363 (488)
Q Consensus       300 -----------~v~~~a~~~L~nl~~~~----~~~~~~l~~~-~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~  363 (488)
                                 .-+.+|+.+|.|++..+    .+.++.++.. |+++.|..++.+++..+|+.|+++++|++...  +.+
T Consensus       563 ~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~--e~i  640 (778)
T 3opb_A          563 NPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHP--LTI  640 (778)
T ss_dssp             CC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSG--GGT
T ss_pred             ccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCc--HHH
Confidence                       12779999999999964    3456778884 89999999999999999999999999999743  332


Q ss_pred             -HHHHHC------CChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcC-
Q 011328          364 -KFLVSQ------GCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSH-  435 (488)
Q Consensus       364 -~~l~~~------~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~-  435 (488)
                       ..+...      +.++.|+.+++.++.+++..|.++|.++....+..           ....++..++++.+..+..+ 
T Consensus       641 ~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~i-----------a~~ll~~~~gi~~Ll~lL~~~  709 (778)
T 3opb_A          641 AAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLI-----------AKELLTKKELIENAIQVFADQ  709 (778)
T ss_dssp             GGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHH-----------HHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHH-----------HHHHHHccccHHHHHHHHhcc
Confidence             222211      23778999999999999999999999996544432           14445555899999999877 


Q ss_pred             -CCHHHHHHHHHHHHHhcC
Q 011328          436 -DNTEIYEKAVKILETYWV  453 (488)
Q Consensus       436 -~~~~v~~~a~~~l~~~~~  453 (488)
                       ++++++.++..++.++++
T Consensus       710 ~~~~~l~~R~~~~l~NL~~  728 (778)
T 3opb_A          710 IDDIELRQRLLMLFFGLFE  728 (778)
T ss_dssp             TTCHHHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHHHH
Confidence             899999999999999997

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.91  E-value=2.1e-23  Score=208.21  Aligned_cols=322  Identities=10%  Similarity=0.105  Sum_probs=257.1

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHH-HcCCHHHHHHhhcC-CCChhHHHHHHHHHHHhcCCCch
Q 011328           30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVI-QSGVVPRFIEFLSR-DDFPQLQFEAAWALTNIASGTSE  107 (488)
Q Consensus        30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~~~~i~~L~~lL~~-~~~~~v~~~a~~~L~~l~~~~~~  107 (488)
                      +..+.+.+.|.+++.+.+..|+..|..+...  .+....+. +.++++.|++++++ .+ ..+.+.++.+|.|++...+.
T Consensus       334 ~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~--~~VKe~L~~d~~~L~~Lv~llk~~~d-~s~~Ygal~IL~NLt~~~~~  410 (778)
T 3opb_A          334 QLSEIFINAISRRIVPKVEMSVEALAYLSLK--ASVKIMIRSNESFTEILLTMIKSQKM-THCLYGLLVIMANLSTLPEE  410 (778)
T ss_dssp             HHHHHHHHHTTTCCHHHHHHHHHHHHHHTTS--SHHHHHHHHCHHHHHHHHHHHTTTCC-TTHHHHHHHHHHHTTCCCCC
T ss_pred             HHHHHHHHHHhcCCccHHHHHHHHHHHHhCC--HHHHHHHHhCHHHHHHHHHHHhCCCC-chHHHHHHHHHHHhcCCCcc
Confidence            3566788888887777799999999996443  45555555 45779999999996 55 78999999999999974331


Q ss_pred             --------------------------------------hhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCch
Q 011328          108 --------------------------------------NTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK  149 (488)
Q Consensus       108 --------------------------------------~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~  149 (488)
                                                            .+..+.+.|+++.|+.++.++++.+++.++++|.+++.+ +.
T Consensus       411 ~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d-~~  489 (778)
T 3opb_A          411 XXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRS-KN  489 (778)
T ss_dssp             CCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTS-GG
T ss_pred             cchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HH
Confidence                                                  356678999999999999999999999999999999977 66


Q ss_pred             hHHHHHhcCChHHHHHHhcccccH--hHHHHHHHHHHHhhcCCCCCChh---hhhchHHHHHHhhcc-CCh---------
Q 011328          150 CRDLVLSNGALMPLLAQFNEHAKL--SMLRNATWTLSNFCRGKPQPLFE---QTRPALPALERLIHS-NDD---------  214 (488)
Q Consensus       150 ~~~~~~~~~~l~~L~~ll~~~~~~--~v~~~a~~~L~~l~~~~~~~~~~---~~~~~~~~l~~ll~~-~~~---------  214 (488)
                      .|..+.+.|+++.|+.++...++.  ..+..|+.+|.+++.........   ...++++.|+.+|.. +..         
T Consensus       490 ~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~  569 (778)
T 3opb_A          490 FIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDE  569 (778)
T ss_dssp             GHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CC
T ss_pred             HHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccc
Confidence            899999999999999999554433  27899999999998543211110   113899999999983 221         


Q ss_pred             ----hHHHHHHHHHHHhccCCc----hhHHHHHHh-CCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCC-
Q 011328          215 ----EVLTDACWALSYLSDGTN----DKIQAVIEA-GVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQ-  284 (488)
Q Consensus       215 ----~v~~~al~~L~~l~~~~~----~~~~~~~~~-~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~-  284 (488)
                          .-+..|+.+|.|++..++    +....+++. |+++.|..+|.++++.+++.|+++++|++.......+.+...+ 
T Consensus       570 ~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~  649 (778)
T 3opb_A          570 QIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLEN  649 (778)
T ss_dssp             CCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSS
T ss_pred             cccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcC
Confidence                127789999999998763    334667774 8999999999999999999999999999984432223443322 


Q ss_pred             -----ChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHc-CChHHHHHHHhc--CChhHHHHHHHHHHHhcc
Q 011328          285 -----ALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEA-GIIGPLVNLLLN--AEFEIKKEAAWAISNATS  356 (488)
Q Consensus       285 -----~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~-~~l~~L~~ll~~--~~~~v~~~a~~aL~~l~~  356 (488)
                           .++.|+.+++++ +.++|+.|+|+|+|++..++...+.+++. ++++.++.++.+  ++++++..++.++.||+.
T Consensus       650 ~~~~~rL~lLV~Ll~s~-D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~  728 (778)
T 3opb_A          650 PQSLRNFNILVKLLQLS-DVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFE  728 (778)
T ss_dssp             HHHHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred             chhhccHHHHHHHHcCC-CHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence                 377899999888 99999999999999987778888888876 799999999999  899999999999999996

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.90  E-value=3.6e-22  Score=175.32  Aligned_cols=199  Identities=38%  Similarity=0.586  Sum_probs=184.9

Q ss_pred             hhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhh
Q 011328          198 TRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQT  277 (488)
Q Consensus       198 ~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~  277 (488)
                      ..+..+.+..+++++++.++..++++|.+++..+++....+.+.|+++.|+.+|.++++.++..|+++|++++.+++...
T Consensus        10 ~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~   89 (210)
T 4db6_A           10 HGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI   89 (210)
T ss_dssp             ---CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred             ccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHH
Confidence            35788899999999999999999999999998887888889999999999999999999999999999999998888888


Q ss_pred             HHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccC
Q 011328          278 QCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSG  357 (488)
Q Consensus       278 ~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~  357 (488)
                      ..+.+.|+++.++.+|+++ ++.++..|+++|+|++.++++....+.+.|+++.|++++.++++.++..|+++|.+++..
T Consensus        90 ~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~  168 (210)
T 4db6_A           90 QAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG  168 (210)
T ss_dssp             HHHHHTTCHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHCCCHHHHHHHHcCC-cHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence            8899999999999999999 999999999999999998888888999999999999999999999999999999999985


Q ss_pred             CCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHH
Q 011328          358 GSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENIL  398 (488)
Q Consensus       358 ~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~  398 (488)
                       +++....+.+.|+++.|.+++++++++++..++++|.++.
T Consensus       169 -~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~  208 (210)
T 4db6_A          169 -GNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ  208 (210)
T ss_dssp             -CHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred             -CcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence             4677888899999999999999999999999999999875

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.90  E-value=2.7e-22  Score=176.05  Aligned_cols=199  Identities=34%  Similarity=0.523  Sum_probs=181.3

Q ss_pred             HcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchh
Q 011328           71 QSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC  150 (488)
Q Consensus        71 ~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~  150 (488)
                      ..+..+.|+.+|++++ ++++..|+++|.+++..+++.+..+.+.|+++.|+++|+++++.++..|+++|++++.+++..
T Consensus        10 ~~~~~~~l~~LL~s~~-~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~   88 (210)
T 4db6_A           10 HGSELPQMVQQLNSPD-QQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ   88 (210)
T ss_dssp             ---CHHHHHHHTTCSC-HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred             ccchhHHHHHHhcCCC-HHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHH
Confidence            4688999999999999 999999999999999878999999999999999999999999999999999999999888888


Q ss_pred             HHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCC-CCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhcc
Q 011328          151 RDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP-QPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSD  229 (488)
Q Consensus       151 ~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~  229 (488)
                      +..+.+.|+++.++.++ ++.++.++..++++|.+++...+ ........++++.+++++++++..++..++++|.+++.
T Consensus        89 ~~~i~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  167 (210)
T 4db6_A           89 IQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS  167 (210)
T ss_dssp             HHHHHHTTCHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHCCCHHHHHHHH-cCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence            89999999999999999 77789999999999999997653 22344567899999999999999999999999999999


Q ss_pred             CCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhc
Q 011328          230 GTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVT  271 (488)
Q Consensus       230 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~  271 (488)
                      .+++....+.+.|+++.|+.++.++++.++..|+++|.+++.
T Consensus       168 ~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  209 (210)
T 4db6_A          168 GGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS  209 (210)
T ss_dssp             SCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred             CCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence            877777888899999999999999999999999999999975

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.88  E-value=3.6e-21  Score=175.48  Aligned_cols=226  Identities=17%  Similarity=0.144  Sum_probs=185.2

Q ss_pred             hhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHH-hhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHH
Q 011328           88 PQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVR-LLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQ  166 (488)
Q Consensus        88 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~-~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~l  166 (488)
                      .+-+..|+..|.+++. +.++...+.+.|+++.|+. +|.++++.++..|+|+|++++.+++.+++.+++.|++++|+.+
T Consensus        54 ~e~k~~Al~~L~~lv~-~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~L  132 (296)
T 1xqr_A           54 QQEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL  132 (296)
T ss_dssp             HHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHh-ChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence            4678899999999999 6778888999999999999 9999999999999999999999999999999999999999999


Q ss_pred             hcccccHhHHHHHHHHHHHhhcCCCC-CChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHH
Q 011328          167 FNEHAKLSMLRNATWTLSNFCRGKPQ-PLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCP  245 (488)
Q Consensus       167 l~~~~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~  245 (488)
                      |..+++..+++.|+|+|++++.+.+. .......++++.|+.++++++..++..++|+|++++..+++..+.+++.|+++
T Consensus       133 L~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~  212 (296)
T 1xqr_A          133 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQ  212 (296)
T ss_dssp             HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHH
T ss_pred             HccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHH
Confidence            95455789999999999999987633 33444578999999999999999999999999999988888888999999999


Q ss_pred             HHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhh--CCC---hHHHHHHhcccc-hhhHHHHHHHHHHHHhc
Q 011328          246 RLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIIN--HQA---LPCLLDLLTQNY-KKSIKKEACWTISNITA  314 (488)
Q Consensus       246 ~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~--~~~---~~~L~~lL~~~~-~~~v~~~a~~~L~nl~~  314 (488)
                      .|+.+|.++++.++..++.+|++++...+......-.  ..+   ++.-.+-+++.+ ..++...+..++.++..
T Consensus       213 ~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~il~~~f~  287 (296)
T 1xqr_A          213 QLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTCFS  287 (296)
T ss_dssp             HHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHcC
Confidence            9999999999999999999999999875443332221  111   111223333221 34555666666666653

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.83  E-value=3.2e-20  Score=161.63  Aligned_cols=197  Identities=19%  Similarity=0.152  Sum_probs=169.9

Q ss_pred             CHHHHHHhhcCCCCh--hHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhH
Q 011328           74 VVPRFIEFLSRDDFP--QLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR  151 (488)
Q Consensus        74 ~i~~L~~lL~~~~~~--~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~  151 (488)
                      .++.++++|++++ +  +++..|++++.+++..+++.+..+.+.|+||.|+++|+++++++++.|+++|.||+.++++.+
T Consensus         9 ~i~~lV~lL~s~~-~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk   87 (233)
T 3tt9_A            9 TLERAVSMLEADH-MLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNK   87 (233)
T ss_dssp             CHHHHHHTCCSSC-CCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             cHHHHHHHhCCCC-chHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence            5899999999988 6  889999999999998789999999999999999999999999999999999999999888889


Q ss_pred             HHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhc----------------cCChh
Q 011328          152 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH----------------SNDDE  215 (488)
Q Consensus       152 ~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~----------------~~~~~  215 (488)
                      ..+.+.|++++|+++|..+.+..+++.++.+|++|+.....+.. ...+++|.|+.++.                ..+..
T Consensus        88 ~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~-i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~  166 (233)
T 3tt9_A           88 LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNL-MITEALLTLTENIIIPFSGWPEGDYPKANGLLDFD  166 (233)
T ss_dssp             HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHH-HHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHH
T ss_pred             HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHH-HHhccHHHHHHHHhccccCCcccccccccccchHH
Confidence            99999999999999995457889999999999999987544333 33567888887653                12668


Q ss_pred             HHHHHHHHHHHhccCCchhHHHHHHh-CCHHHHHHhcCC------CCcchHhHHHHHHhHhhcC
Q 011328          216 VLTDACWALSYLSDGTNDKIQAVIEA-GVCPRLVELLRH------PSPSVLIPALRTVGNIVTG  272 (488)
Q Consensus       216 v~~~al~~L~~l~~~~~~~~~~~~~~-~~l~~L~~lL~~------~~~~v~~~a~~~L~~l~~~  272 (488)
                      ++..+..+|.|++..+++..+.+.+. |+++.|+.+++.      .+...++.|+.+|.||++.
T Consensus       167 v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~  230 (233)
T 3tt9_A          167 IFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ  230 (233)
T ss_dssp             HHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence            99999999999998776666777765 678999999864      2567889999999999874

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.82  E-value=5.9e-20  Score=159.97  Aligned_cols=197  Identities=18%  Similarity=0.180  Sum_probs=166.6

Q ss_pred             ccHHHHHHHhcCCCH--HHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCch
Q 011328           30 ESLPAMVAGVWSDDR--NIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSE  107 (488)
Q Consensus        30 ~~i~~l~~~L~s~~~--~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~  107 (488)
                      -.+|.+++.|+++++  +++..|++.+.+++... .+....+++.|++|.|+++|++++ +++|..|+++|.+++.++++
T Consensus         8 ~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~-~~~r~~I~~~G~Ip~LV~lL~s~~-~~vq~~Aa~aL~nLa~~~~~   85 (233)
T 3tt9_A            8 MTLERAVSMLEADHMLPSRISAAATFIQHECFQK-SEARKRVNQLRGILKLLQLLKVQN-EDVQRAVCGALRNLVFEDND   85 (233)
T ss_dssp             CCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHC-HHHHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHH
T ss_pred             ccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCC-cHHHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHHhCCHH
Confidence            358899999999888  89999999999987654 567888889999999999999988 99999999999999998899


Q ss_pred             hhHHHHhCCCHHHHHHhhC-CCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhc---------------ccc
Q 011328          108 NTRVVIDHGAVPIFVRLLS-SPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN---------------EHA  171 (488)
Q Consensus       108 ~~~~~~~~g~i~~L~~~L~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~---------------~~~  171 (488)
                      ++..+.+.|+++.|+++|+ +++.++++.++.+|++|+.... .+..+.+ +++++|+.++.               ...
T Consensus        86 nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~-~k~~i~~-~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~  163 (233)
T 3tt9_A           86 NKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDK-LKNLMIT-EALLTLTENIIIPFSGWPEGDYPKANGLL  163 (233)
T ss_dssp             HHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGG-GHHHHHH-HHHHHHCCCCCHHHHCCCGGGCCCCCTTC
T ss_pred             HHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChh-hHHHHHh-ccHHHHHHHHhccccCCcccccccccccc
Confidence            9999999999999999998 5799999999999999997654 5666665 46888887652               013


Q ss_pred             cHhHHHHHHHHHHHhhcCC-CCCChhhh-hchHHHHHHhhcc------CChhHHHHHHHHHHHhccC
Q 011328          172 KLSMLRNATWTLSNFCRGK-PQPLFEQT-RPALPALERLIHS------NDDEVLTDACWALSYLSDG  230 (488)
Q Consensus       172 ~~~v~~~a~~~L~~l~~~~-~~~~~~~~-~~~~~~l~~ll~~------~~~~v~~~al~~L~~l~~~  230 (488)
                      ++.++.++..+|.||+... .....+.. .|+++.|+.+++.      .+.+.++.++.+|.||+..
T Consensus       164 ~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~  230 (233)
T 3tt9_A          164 DFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ  230 (233)
T ss_dssp             CHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred             hHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence            6789999999999999865 44444433 5789999999974      2678999999999999864

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=99.81  E-value=2.6e-18  Score=175.14  Aligned_cols=383  Identities=11%  Similarity=0.117  Sum_probs=286.2

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh
Q 011328           30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT  109 (488)
Q Consensus        30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~  109 (488)
                      ..+|.+.+.+.++++.+|..|+..|..++.....    ......++|.+..++++++ +.+|..|+.++..++...+.. 
T Consensus       164 ~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~----~~~~~~l~~~l~~~~~d~~-~~vr~~a~~~l~~l~~~~~~~-  237 (588)
T 1b3u_A          164 ELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLEL----DNVKSEIIPMFSNLASDEQ-DSVRLLAVEACVNIAQLLPQE-  237 (588)
T ss_dssp             HHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCH----HHHHHTHHHHHHHHHTCSC-HHHHTTHHHHHHHHHHHSCHH-
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcH----HhHHHHHHHHHHHHhcCCc-HHHHHHHHHHHHHHHHhCCHH-
Confidence            4567777888889999999999999998765421    1234578899999999988 899999999999988633221 


Q ss_pred             HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcC
Q 011328          110 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG  189 (488)
Q Consensus       110 ~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~  189 (488)
                        .....+++.+..+++++++.+|..++.+|+.++.....   .......++.++.++ +++++.++..+++++..++..
T Consensus       238 --~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~~~~~  311 (588)
T 1b3u_A          238 --DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP---EITKTDLVPAFQNLM-KDCEAEVRAAASHKVKEFCEN  311 (588)
T ss_dssp             --HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH---HHHHHTHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHT
T ss_pred             --HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc---ccchhHHHHHHHHHh-CCCcHHHHHHHHHHHHHHHHH
Confidence              12234688888899999999999999999999753211   122334677888888 678899999999999999886


Q ss_pred             CCCCCh--hhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHh
Q 011328          190 KPQPLF--EQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVG  267 (488)
Q Consensus       190 ~~~~~~--~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~  267 (488)
                      .+....  .....++|.+..+++++++.++..+++++..++..-...   .....+++.+..+++++++.+|..++.+++
T Consensus       312 ~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~---~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~  388 (588)
T 1b3u_A          312 LSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKD---NTIEHLLPLFLAQLKDECPEVRLNIISNLD  388 (588)
T ss_dssp             SCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHH---HHHHHTHHHHHHHHTCSCHHHHHHHHTTCH
T ss_pred             hChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHh---HHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence            533221  345678899999999999999999999999987543221   122357888999999988999999999988


Q ss_pred             HhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcC-CHHHHHHHHHcCChHHHHHHHhcCChhHHHH
Q 011328          268 NIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG-NVNQIQAIIEAGIIGPLVNLLLNAEFEIKKE  346 (488)
Q Consensus       268 ~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~  346 (488)
                      .+.......   .....+++.+..++.++ ++.+|..++.++..++.. ..+    .....+++.+...+.+++..||..
T Consensus       389 ~l~~~~~~~---~~~~~~lp~l~~~~~d~-~~~vr~~~~~~l~~l~~~~~~~----~~~~~l~~~l~~~l~d~~~~Vr~~  460 (588)
T 1b3u_A          389 CVNEVIGIR---QLSQSLLPAIVELAEDA-KWRVRLAIIEYMPLLAGQLGVE----FFDEKLNSLCMAWLVDHVYAIREA  460 (588)
T ss_dssp             HHHHHSCHH---HHHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHHCGG----GCCHHHHHHHHHGGGCSSHHHHHH
T ss_pred             HHHHhcCHH---HHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHHHHcCHH----HHHHHHHHHHHHHhcCCcHHHHHH
Confidence            887643211   11235678888888887 899999999999988752 111    111236788888888889999999


Q ss_pred             HHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccH
Q 011328          347 AAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGL  426 (488)
Q Consensus       347 a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~  426 (488)
                      |+.+++.++...+++..    ...+++.|..+++++++.++..++.++..+.......             . + ....+
T Consensus       461 a~~~l~~l~~~~~~~~~----~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~-------------~-~-~~~~~  521 (588)
T 1b3u_A          461 ATSNLKKLVEKFGKEWA----HATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQD-------------I-T-TKHML  521 (588)
T ss_dssp             HHHHHHHHHHHHCHHHH----HHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHH-------------H-H-HHHTH
T ss_pred             HHHHHHHHHHHhCchhH----HHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHH-------------H-H-HHHHH
Confidence            99999999865443321    2357888888888889999999999999887653321             1 1 12346


Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHhcCC
Q 011328          427 EKIENLQSHDNTEIYEKAVKILETYWVE  454 (488)
Q Consensus       427 ~~L~~l~~~~~~~v~~~a~~~l~~~~~~  454 (488)
                      +.+..+..+++++|+..+.+.+..++..
T Consensus       522 ~~l~~~l~d~~~~Vr~~a~~~l~~l~~~  549 (588)
T 1b3u_A          522 PTVLRMAGDPVANVRFNVAKSLQKIGPI  549 (588)
T ss_dssp             HHHHHGGGCSCHHHHHHHHHHHHHHGGG
T ss_pred             HHHHhhCCCCCchHHHHHHHHHHHHHHH
Confidence            7777888888889998888888887753

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=99.80  E-value=3.2e-18  Score=174.45  Aligned_cols=382  Identities=12%  Similarity=0.141  Sum_probs=285.6

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh
Q 011328           30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT  109 (488)
Q Consensus        30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~  109 (488)
                      ..+|.+...++++++.+|..|+.+|..++...+.    ......++|.+.+++++++ ..+|..++.+++.++.....  
T Consensus       203 ~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~~~~~l~~~~~d~~-~~vR~~a~~~l~~l~~~~~~--  275 (588)
T 1b3u_A          203 EIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQ----EDLEALVMPTLRQAAEDKS-WRVRYMVADKFTELQKAVGP--  275 (588)
T ss_dssp             THHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCH----HHHHHHTHHHHHHHHTCSS-HHHHHHHHHTHHHHHHHHCH--
T ss_pred             HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCH----HHHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHHHHHhCc--
Confidence            4577888888899999999999999998765421    1233458889999998888 89999999999999862111  


Q ss_pred             HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCch-hHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhc
Q 011328          110 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK-CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR  188 (488)
Q Consensus       110 ~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~  188 (488)
                       ......+++.+..+++++++.+|..++++|+.++...+. .+........++.+..++ ++.++.++..++++|..++.
T Consensus       276 -~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l-~d~~~~vR~~a~~~l~~l~~  353 (588)
T 1b3u_A          276 -EITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELV-SDANQHVKSALASVIMGLSP  353 (588)
T ss_dssp             -HHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHH-TCSCHHHHHHHHTTGGGGHH
T ss_pred             -ccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHH
Confidence             122335689999999999999999999999999864332 111122234566777777 77889999999999999875


Q ss_pred             CCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhH
Q 011328          189 GKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN  268 (488)
Q Consensus       189 ~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~  268 (488)
                      ....  ......++|.+..+++++++.++..++.++..+.......   .....+++.+..++.+.++.+|..++.+++.
T Consensus       354 ~~~~--~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~---~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~  428 (588)
T 1b3u_A          354 ILGK--DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIR---QLSQSLLPAIVELAEDAKWRVRLAIIEYMPL  428 (588)
T ss_dssp             HHCH--HHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHH---HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred             HhhH--hHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHH---HHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Confidence            4211  1223567889999999999999999999998887543211   1223577888888998999999999999999


Q ss_pred             hhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcC-CHHHHHHHHHcCChHHHHHHHhcCChhHHHHH
Q 011328          269 IVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG-NVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEA  347 (488)
Q Consensus       269 l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a  347 (488)
                      ++......   .....+++.+...+.++ +..+|..|+.+++.++.. .++    .....++|.+..++.++++.+|..+
T Consensus       429 l~~~~~~~---~~~~~l~~~l~~~l~d~-~~~Vr~~a~~~l~~l~~~~~~~----~~~~~llp~l~~~~~~~~~~~R~~a  500 (588)
T 1b3u_A          429 LAGQLGVE---FFDEKLNSLCMAWLVDH-VYAIREAATSNLKKLVEKFGKE----WAHATIIPKVLAMSGDPNYLHRMTT  500 (588)
T ss_dssp             HHHHHCGG---GCCHHHHHHHHHGGGCS-SHHHHHHHHHHHHHHHHHHCHH----HHHHHTHHHHHHTTTCSCHHHHHHH
T ss_pred             HHHHcCHH---HHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHHhCch----hHHHHHHHHHHHHhhCCCHHHHHHH
Confidence            87532211   12234678888899888 899999999999999873 222    1223588888888888899999999


Q ss_pred             HHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHH
Q 011328          348 AWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLE  427 (488)
Q Consensus       348 ~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~  427 (488)
                      +++++.++...+.+    .....+++.|.+.++++++.++..+++++..+.......           +   + ....++
T Consensus       501 ~~~l~~l~~~~~~~----~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~-----------~---~-~~~~~p  561 (588)
T 1b3u_A          501 LFCINVLSEVCGQD----ITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNS-----------T---L-QSEVKP  561 (588)
T ss_dssp             HHHHHHHHHHHHHH----HHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHH-----------H---H-HHHHHH
T ss_pred             HHHHHHHHHhcCHH----HHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhchh-----------h---h-HHHHHH
Confidence            99999998643222    122358999999999999999999999999998653211           1   1 133456


Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHHhc
Q 011328          428 KIENLQSHDNTEIYEKAVKILETYW  452 (488)
Q Consensus       428 ~L~~l~~~~~~~v~~~a~~~l~~~~  452 (488)
                      .|..+.++++++|+..|...+..+-
T Consensus       562 ~l~~l~~d~d~~vr~~a~~al~~l~  586 (588)
T 1b3u_A          562 ILEKLTQDQDVDVKYFAQEALTVLS  586 (588)
T ss_dssp             HHHHHTTCSSHHHHHHHHHHHHHTT
T ss_pred             HHHHHcCCCchhHHHHHHHHHHHhh
Confidence            7788889999999999999998764

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=99.79  E-value=3.3e-18  Score=181.77  Aligned_cols=355  Identities=13%  Similarity=0.148  Sum_probs=260.1

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh
Q 011328           30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT  109 (488)
Q Consensus        30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~  109 (488)
                      ..-+.+++.|.++++.+|..++.++..++..+....     ..+.++.|++.+.+++ +.++..++.+|+.++...++..
T Consensus        90 ~ik~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~~~~-----wp~ll~~L~~~l~~~~-~~~r~~al~~L~~i~~~~~~~~  163 (852)
T 4fdd_A           90 FIKSECLNNIGDSSPLIRATVGILITTIASKGELQN-----WPDLLPKLCSLLDSED-YNTCEGAFGALQKICEDSAEIL  163 (852)
T ss_dssp             HHHHHHHTTTTCSSHHHHHHHHHHHHHHHHHTTTTT-----CTTHHHHHHHHHSCSS-HHHHHHHHHHHHHHHHHHTTHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCccc-----cHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHhHHHh
Confidence            344568888888999999999999999987652211     2468899999999988 8999999999999987433321


Q ss_pred             HHHH----hCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHH
Q 011328          110 RVVI----DHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSN  185 (488)
Q Consensus       110 ~~~~----~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~  185 (488)
                      ..-.    -..+++.+++.+.++++.+|..|++++..+....+..... .-...++.++..+ .++++.++..++++|..
T Consensus       164 ~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~-~~~~~l~~l~~~~-~d~~~~vr~~a~~~L~~  241 (852)
T 4fdd_A          164 DSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALML-HIDSFIENLFALA-GDEEPEVRKNVCRALVM  241 (852)
T ss_dssp             HHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHT-SHHHHHHHHHHHH-TCCCHHHHHHHHHHHHH
T ss_pred             chhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHH-HHHHHHHHHHHHc-CCCCHHHHHHHHHHHHH
Confidence            1100    1235677778888899999999999999988654421100 0113566677766 67788999999999999


Q ss_pred             hhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHh---CCHHHHHHhc-----------
Q 011328          186 FCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA---GVCPRLVELL-----------  251 (488)
Q Consensus       186 l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~---~~l~~L~~lL-----------  251 (488)
                      ++...+..-.....++++.+...+.+.++.++..++.++..++.....  ......   .+++.++..+           
T Consensus       242 l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~--~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~  319 (852)
T 4fdd_A          242 LLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPIC--KDVLVRHLPKLIPVLVNGMKYSDIDIILLK  319 (852)
T ss_dssp             HHHHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTH--HHHHTTTHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred             HHHhCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhH--HHHHHHHHHHHHHHHHHHcCCcHhHHHHhc
Confidence            998654332334567888899999999999999999999999865421  112221   4456666666           


Q ss_pred             CC-----------CCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHH
Q 011328          252 RH-----------PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQI  320 (488)
Q Consensus       252 ~~-----------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~  320 (488)
                      .+           .+..+|..|..++..++...+..   ++. .+++.+...+.++ ++.+|..|++++++++.+..+..
T Consensus       320 ~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~---~~~-~l~~~l~~~l~~~-~~~~R~aa~~alg~i~~~~~~~~  394 (852)
T 4fdd_A          320 GDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDE---LLP-HILPLLKELLFHH-EWVVKESGILVLGAIAEGCMQGM  394 (852)
T ss_dssp             C------------CCCCHHHHHHHHHHHHHHHHGGG---GHH-HHHHHHHHHHTCS-SHHHHHHHHHHHHHTTTTTHHHH
T ss_pred             CCcccccccccccccchHHHHHHHHHHHHHHhccHH---HHH-HHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhcchHHH
Confidence            23           23467889999999998754322   222 4678888888888 89999999999999999766654


Q ss_pred             HHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHH-HHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHH
Q 011328          321 QAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNE-QIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILK  399 (488)
Q Consensus       321 ~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~-~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~  399 (488)
                      .... .++++.++..+.++++.||..|++++++++...... ...++  .++++.|.+.++++++.++..++++|.+++.
T Consensus       395 ~~~l-~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~--~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~  471 (852)
T 4fdd_A          395 IPYL-PELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYL--KPLMTELLKRILDSNKRVQEAACSAFATLEE  471 (852)
T ss_dssp             GGGH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTH--HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred             HHHH-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHH--HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence            4433 358999999999999999999999999998532110 00111  1467888888888899999999999999987


Q ss_pred             hhh
Q 011328          400 AGE  402 (488)
Q Consensus       400 ~~~  402 (488)
                      ...
T Consensus       472 ~~~  474 (852)
T 4fdd_A          472 EAC  474 (852)
T ss_dssp             HHG
T ss_pred             Hhh
Confidence            654

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=99.78  E-value=9e-16  Score=149.46  Aligned_cols=429  Identities=14%  Similarity=0.138  Sum_probs=304.7

Q ss_pred             hhcCCCCChhhHHHHhhhccHHHHHHHhcC--CCHHHHHHHHHHHHHHhccCCCc----------------cHHHHH-Hc
Q 011328           12 FSLLKPMDPMFFIIQLQLESLPAMVAGVWS--DDRNIQLDATTQFRKLLSIERSP----------------PINEVI-QS   72 (488)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~i~~l~~~L~s--~~~~~~~~a~~~L~~l~~~~~~~----------------~~~~~~-~~   72 (488)
                      .++.+.....+-.     ++++.++..|+.  +|.++...++..|.++.+....+                ..+.++ +.
T Consensus        47 k~~sk~y~~~Vg~-----~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~  121 (651)
T 3grl_A           47 KSLSKKYRLEVGI-----QAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQ  121 (651)
T ss_dssp             HHTTTTTTTHHHH-----HTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHST
T ss_pred             HHHHHHhHHHhhh-----hhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCC
Confidence            3455666666666     889999999985  57888888999999887754221                112333 56


Q ss_pred             CCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCch-hhHHHH-hCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchh
Q 011328           73 GVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSE-NTRVVI-DHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC  150 (488)
Q Consensus        73 ~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~-~~~~~~-~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~  150 (488)
                      +.++.|+.+|++.+ ..+|..++.+|..++...++ .++.+. ..++++.|+.+|++..+.+|..++..|..++.++++.
T Consensus       122 ~~i~~Ll~lL~~~d-f~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~i  200 (651)
T 3grl_A          122 ENVTLLLSLLEEFD-FHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAI  200 (651)
T ss_dssp             HHHHHHHHHTTCCC-HHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHH
T ss_pred             ccHHHHHHHhcCcc-HHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHH
Confidence            88999999999998 89999999999999987776 677777 4499999999999999999999999999999999999


Q ss_pred             HHHHHhcCChHHHHHHhcccc---cHhHHHHHHHHHHHhhcCC-CCCChhhhhchHHHHHHhhccCCh------hHHH--
Q 011328          151 RDLVLSNGALMPLLAQFNEHA---KLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIHSNDD------EVLT--  218 (488)
Q Consensus       151 ~~~~~~~~~l~~L~~ll~~~~---~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~~~l~~ll~~~~~------~v~~--  218 (488)
                      ++.+.-.|+++.|+.++....   ...+...++.++.+|.+.+ .+.......++++.+..++..++.      ....  
T Consensus       201 QklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~  280 (651)
T 3grl_A          201 QKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNL  280 (651)
T ss_dssp             HHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHH
Confidence            999999999999999995332   2367889999999999987 355666668999999999975432      1223  


Q ss_pred             -HHHHHHHHhccCCc------hhHHHHHHhCCHHHHHHhcCCC--CcchHhHHHHHHhHhhcCCchhhHHHhhCC-----
Q 011328          219 -DACWALSYLSDGTN------DKIQAVIEAGVCPRLVELLRHP--SPSVLIPALRTVGNIVTGDDMQTQCIINHQ-----  284 (488)
Q Consensus       219 -~al~~L~~l~~~~~------~~~~~~~~~~~l~~L~~lL~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~-----  284 (488)
                       .++.++.-++..+.      .....+.+.|+++.+++++...  ...++..|+.+++.+.++++.....+.+..     
T Consensus       281 ~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~  360 (651)
T 3grl_A          281 HLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNP  360 (651)
T ss_dssp             HHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSS
T ss_pred             HHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCC
Confidence             36666776665422      3345678889999999998765  467889999999999998887666554322     


Q ss_pred             ----ChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHc----------CC---hHHHHHHHhcCChhHHHHH
Q 011328          285 ----ALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEA----------GI---IGPLVNLLLNAEFEIKKEA  347 (488)
Q Consensus       285 ----~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~----------~~---l~~L~~ll~~~~~~v~~~a  347 (488)
                          ++..++.++.+.....+|.+|+.++..+..++++....+...          +.   -..+..-+.+.|+--.-.|
T Consensus       361 ~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~N~~~Q~~i~~~llp~~~~~~~~~~s~g~ll~~~l~s~d~~~~wfA  440 (651)
T 3grl_A          361 PRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKNQKGQGEIVSTLLPSTIDATGNTVSAGQLLCGGLFSTDSLSNWCA  440 (651)
T ss_dssp             CEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTSSCCCCCTTSSSCHHHHHHHHHTSSCHHHHHHH
T ss_pred             CcChHHHHHHHHhcccccHHHHHHHHHHHHHHHhCCHHHHHHHHHhcCCcccccCCCCCCcchhhhhhhccCchHHHHHH
Confidence                344455556666578899999999999999887766555542          01   1134455555666555668


Q ss_pred             HHHHHHhccCCCHHHHHHHHH--------CCC---hHHHHhhcCC-CCHHHHHHHHHHHHHHHHhhhhhhccCCCCccch
Q 011328          348 AWAISNATSGGSNEQIKFLVS--------QGC---IKPLCDLLNC-PDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNL  415 (488)
Q Consensus       348 ~~aL~~l~~~~~~~~~~~l~~--------~~~---i~~L~~ll~~-~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~  415 (488)
                      +.+|.++... +++.+..+..        ...   +..+...+.. .++.++..-+..|..-+.-++..           
T Consensus       441 avil~hll~~-n~~~K~~~l~v~l~~~~ge~~vtliq~~~~~L~~~~~~ri~vgyL~LL~~WL~e~p~A-----------  508 (651)
T 3grl_A          441 AVALAHALQE-NATQKEQLLRVQLATSIGNPPVSLLQQCTNILSQGSKIQTRVGLLMLLCTWLSNCPIA-----------  508 (651)
T ss_dssp             HHHHHHHHTT-CHHHHHHHTTCBCCCCTTCCCCBHHHHHHHHTTTTCCHHHHHHHHHHHHHHHTTCHHH-----------
T ss_pred             HHHHHHHHcC-CHHHHHHHHhCcccccCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHHHHhCChHH-----------
Confidence            8888888875 3455444433        111   3344555543 34554443333333322222221           


Q ss_pred             HHHHHHhhccHHHHHHhhcC--C--CHHHHHHHHHHHHHhcCCCCCC
Q 011328          416 FAQAIDDAEGLEKIENLQSH--D--NTEIYEKAVKILETYWVEEDED  458 (488)
Q Consensus       416 ~~~~l~~~g~~~~L~~l~~~--~--~~~v~~~a~~~l~~~~~~~~~~  458 (488)
                      ..+.+.+...++.|.+...+  .  +.-|+-.+.-+|.-+|+..+++
T Consensus       509 V~dFL~~~s~l~~L~~~i~~~~~~~~~lvqGL~a~LLGi~yef~~~~  555 (651)
T 3grl_A          509 VTHFLHNSANVPFLTGQIAENLGEEEQLVQGLCALLLGISIYFNDNS  555 (651)
T ss_dssp             HHHHHHSTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHTCCSC
T ss_pred             HHHHHcCCchHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccCCC
Confidence            46666666668888876533  2  2347889999998888776654

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=99.78  E-value=5.4e-18  Score=180.14  Aligned_cols=387  Identities=15%  Similarity=0.151  Sum_probs=274.0

Q ss_pred             cCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHH
Q 011328           40 WSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVP  119 (488)
Q Consensus        40 ~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~  119 (488)
                      .+.++.+|..|+..|.+.+... ......-....+-+.+++.|.+++ +.+|..++.+++.++......    .-.+.++
T Consensus        58 ~~~~~~vR~~a~~~Lkn~i~~~-w~~~~~~~~~~ik~~ll~~l~~~~-~~vr~~~a~~i~~ia~~~~~~----~wp~ll~  131 (852)
T 4fdd_A           58 KSEDEPTRSLSGLILKNNVKAH-FQNFPNGVTDFIKSECLNNIGDSS-PLIRATVGILITTIASKGELQ----NWPDLLP  131 (852)
T ss_dssp             TTSCHHHHHHHHHHHHHHTTTS-GGGCCHHHHHHHHHHHHTTTTCSS-HHHHHHHHHHHHHHHHHTTTT----TCTTHHH
T ss_pred             CCCChHHHHHHHHHHHHHHHHc-cCCCCHHHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHhcCcc----ccHHHHH
Confidence            4678899999999999987643 222222223345567778888887 899999999999998733110    1135789


Q ss_pred             HHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHH----hcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCCh
Q 011328          120 IFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVL----SNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLF  195 (488)
Q Consensus       120 ~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~----~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~  195 (488)
                      .|+..+.++++.+++.++.+|+.++.+.+.....-.    -...++.+++.+ .++++.++..|++++..+....+....
T Consensus       132 ~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l-~~~~~~vR~~A~~aL~~~~~~~~~~~~  210 (852)
T 4fdd_A          132 KLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFF-KHSSPKIRSHAVACVNQFIISRTQALM  210 (852)
T ss_dssp             HHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTT-TCSSHHHHHHHHHHHHTTTTTTCHHHH
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHhcccHHHH
Confidence            999999999999999999999999865433211000    012355556666 577889999999999988765432222


Q ss_pred             hhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCch
Q 011328          196 EQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDM  275 (488)
Q Consensus       196 ~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~  275 (488)
                      .....+++.+..++.++++.++..+++++..++...++.....++ ++++.+...+.+.++.++..|+.++..++.... 
T Consensus       211 ~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~-~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~-  288 (852)
T 4fdd_A          211 LHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMH-NIVEYMLQRTQDQDENVALEACEFWLTLAEQPI-  288 (852)
T ss_dssp             TSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHH-HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTT-
T ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHH-HHHHHHHHHccCCcHHHHHHHHHHHHHHhcchh-
Confidence            234578888999999999999999999999999766544333333 577888888898899999999999999886431 


Q ss_pred             hhHHHhhC---CChHHHHHHh-----------cc--c--------chhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHH
Q 011328          276 QTQCIINH---QALPCLLDLL-----------TQ--N--------YKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGP  331 (488)
Q Consensus       276 ~~~~~~~~---~~~~~L~~lL-----------~~--~--------~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~  331 (488)
                      . ...+..   .+++.++..+           .+  .        .+..+|+.|..++..++...++   .++. .+++.
T Consensus       289 ~-~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~---~~~~-~l~~~  363 (852)
T 4fdd_A          289 C-KDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRD---ELLP-HILPL  363 (852)
T ss_dssp             H-HHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGG---GGHH-HHHHH
T ss_pred             H-HHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccH---HHHH-HHHHH
Confidence            1 112221   3456666665           22  0        1345789999999998863222   1122 36778


Q ss_pred             HHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCC
Q 011328          332 LVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTG  411 (488)
Q Consensus       332 L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~  411 (488)
                      +...+.++++.+|..|+++|++++..........+  .++++.+...++++++.++..+++++.++.........     
T Consensus       364 l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l--~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~-----  436 (852)
T 4fdd_A          364 LKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYL--PELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPP-----  436 (852)
T ss_dssp             HHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGH--HHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCT-----
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHH--HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchH-----
Confidence            88888888999999999999999986643222222  25789999999999999999999999999875432110     


Q ss_pred             ccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCC
Q 011328          412 GVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVE  454 (488)
Q Consensus       412 ~~~~~~~~l~~~g~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~  454 (488)
                           ...+  .+.++.|...+.+++++++..|.+.+.++.+.
T Consensus       437 -----~~~~--~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~  472 (852)
T 4fdd_A          437 -----DTYL--KPLMTELLKRILDSNKRVQEAACSAFATLEEE  472 (852)
T ss_dssp             -----TTTH--HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred             -----HHHH--HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence                 1111  12356677777788999999999999888754

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=99.76  E-value=2.1e-15  Score=152.90  Aligned_cols=376  Identities=15%  Similarity=0.178  Sum_probs=263.5

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh
Q 011328           30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT  109 (488)
Q Consensus        30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~  109 (488)
                      ..++.+++++++++..++..+..++..++... ++.   .  .-+++.+.+-|++++ +.+|..|+++++++.  .++..
T Consensus        49 ~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~-~e~---~--~l~~n~l~kdL~~~n-~~ir~~AL~~L~~i~--~~~~~  119 (591)
T 2vgl_B           49 SLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQ-PDM---A--IMAVNSFVKDCEDPN-PLIRALAVRTMGCIR--VDKIT  119 (591)
T ss_dssp             GGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHS-HHH---H--HTTHHHHGGGSSSSS-HHHHHHHHHHHHTCC--SGGGH
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHcccC-chH---H--HHHHHHHHHHcCCCC-HHHHHHHHHHHHcCC--hHHHH
Confidence            44567888888999999888888888766532 111   1  235678888899988 999999999999986  35544


Q ss_pred             HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcC
Q 011328          110 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG  189 (488)
Q Consensus       110 ~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~  189 (488)
                      ..+     ++.+.+++.++++.+|..|+.++..++...++.   +.+.+.++.+..+| .+.++.++..|+.+|..++..
T Consensus       120 ~~l-----~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~---~~~~~~~~~l~~lL-~d~d~~V~~~A~~aL~~i~~~  190 (591)
T 2vgl_B          120 EYL-----CEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQM---VEDQGFLDSLRDLI-ADSNPMVVANAVAALSEISES  190 (591)
T ss_dssp             HHH-----HHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCC---HHHHHHHHHHHHTT-SCSCHHHHHHHHHHHHHHTTS
T ss_pred             HHH-----HHHHHHHcCCCChHHHHHHHHHHHHHHhhChhh---cccccHHHHHHHHh-CCCChhHHHHHHHHHHHHHhh
Confidence            433     578999999999999999999999998766542   22235677888888 788999999999999999987


Q ss_pred             CCCC-ChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhH
Q 011328          190 KPQP-LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN  268 (488)
Q Consensus       190 ~~~~-~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~  268 (488)
                      .+.. ......+.++.++..+.+.++..+...+.++..++..++....     .+++.+..++++.++.++..|++++..
T Consensus       191 ~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~~-----~~l~~l~~~l~~~~~~V~~ea~~~i~~  265 (591)
T 2vgl_B          191 HPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQ-----SICERVTPRLSHANSAVVLSAVKVLMK  265 (591)
T ss_dssp             CCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHHH-----HHHHHHTTCSCSSTTHHHHHHHHHHHH
T ss_pred             CCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHHH-----HHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence            6433 2334456778888888888999999999999988865543322     567888888999999999999999999


Q ss_pred             hhcC---CchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHH------------------HHH----HH
Q 011328          269 IVTG---DDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVN------------------QIQ----AI  323 (488)
Q Consensus       269 l~~~---~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~------------------~~~----~l  323 (488)
                      +...   +++..+.+. ..+.+.++.++. + ++.+|..|+.++..+....++                  .+.    .+
T Consensus       266 l~~~~~~~~~~~~~~~-~~~~~~L~~L~~-~-d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L  342 (591)
T 2vgl_B          266 FLELLPKDSDYYNMLL-KKLAPPLVTLLS-G-EPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIM  342 (591)
T ss_dssp             SCCSCCBTTBSHHHHH-HHTHHHHHHHTT-S-CHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHH
T ss_pred             HhhccCCCHHHHHHHH-HHHHHHHHHHhc-C-CccHHHHHHHHHHHHHHhChHHHHHHHHhheeccCChHHHHHHHHHHH
Confidence            8742   233333222 244566665554 4 677888888888777641111                  011    11


Q ss_pred             H---Hc----CChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHH
Q 011328          324 I---EA----GIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLEN  396 (488)
Q Consensus       324 ~---~~----~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~  396 (488)
                      .   +.    .+++.|..++.+.+.+++..++++++.++.... ....     .+++.|.+++......++..++.++..
T Consensus       343 ~~l~~~~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~-~~~~-----~~v~~Ll~ll~~~~~~v~~e~i~~l~~  416 (591)
T 2vgl_B          343 IRLASQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVE-QSAE-----RCVSTLLDLIQTKVNYVVQEAIVVIRD  416 (591)
T ss_dssp             HHTCCSSTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCH-HHHH-----HHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred             HHHCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCh-hHHH-----HHHHHHHHHHcccchHHHHHHHHHHHH
Confidence            1   11    245566667777788999999999999987652 2222     357888888888888888888888888


Q ss_pred             HHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhh-cCCCHHHHHHHHHHHHHhcCC
Q 011328          397 ILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQ-SHDNTEIYEKAVKILETYWVE  454 (488)
Q Consensus       397 l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~-~~~~~~v~~~a~~~l~~~~~~  454 (488)
                      ++...+...                 ..++..|.+.. ....++++..+.+++.+|-+.
T Consensus       417 ii~~~p~~~-----------------~~~v~~L~~~l~~~~~~~~~~~~~wilGey~~~  458 (591)
T 2vgl_B          417 IFRKYPNKY-----------------ESIIATLCENLDSLDEPDARAAMIWIVGEYAER  458 (591)
T ss_dssp             HHHHSCSSC-----------------CTTHHHHHHTTTTCCSHHHHHHHHHHHHTTCTT
T ss_pred             HHHHCcchH-----------------HHHHHHHHHHHHhccCHHHHHHHHHHHHccccc
Confidence            876544221                 12233343333 234566667777777766443

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=99.71  E-value=8.1e-16  Score=155.86  Aligned_cols=301  Identities=17%  Similarity=0.150  Sum_probs=210.4

Q ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhH
Q 011328           31 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR  110 (488)
Q Consensus        31 ~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~  110 (488)
                      .++.+.+.|+++++.+|..|++++.++..   .+...     .+++.+.+++.+++ +.+|..|+.++.++...+++...
T Consensus        87 ~~n~l~kdL~~~n~~ir~~AL~~L~~i~~---~~~~~-----~l~~~l~~~L~d~~-~~VRk~A~~al~~i~~~~p~~~~  157 (591)
T 2vgl_B           87 AVNSFVKDCEDPNPLIRALAVRTMGCIRV---DKITE-----YLCEPLRKCLKDED-PYVRKTAAVCVAKLHDINAQMVE  157 (591)
T ss_dssp             THHHHGGGSSSSSHHHHHHHHHHHHTCCS---GGGHH-----HHHHHHHHHSSCSC-HHHHHHHHHHHHHHHHSSCCCHH
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHcCCh---HHHHH-----HHHHHHHHHcCCCC-hHHHHHHHHHHHHHHhhChhhcc
Confidence            45677778889999999999998888642   23222     34678899999988 99999999999999886665432


Q ss_pred             HHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCC
Q 011328          111 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK  190 (488)
Q Consensus       111 ~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~  190 (488)
                         +.++++.+..+|.++++.++..|+.+|..++...+.........+.+..+++.+ .+.++-.+...+.++..++...
T Consensus       158 ---~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l-~~~~~~~q~~il~~l~~l~~~~  233 (591)
T 2vgl_B          158 ---DQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTAL-NECTEWGQIFILDCLSNYNPKD  233 (591)
T ss_dssp             ---HHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHTSCCCS
T ss_pred             ---cccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcC-CCCCchHHHHHHHHHHHhCCCC
Confidence               246789999999999999999999999999987653210001112356677776 5567777888888887776332


Q ss_pred             CCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccC---CchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHh
Q 011328          191 PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDG---TNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVG  267 (488)
Q Consensus       191 ~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~---~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~  267 (488)
                          ......+++.+..++++.++.|+..|++++..+...   +++..+.+. ..+.+.|+.++. +++.+|..|+.+++
T Consensus       234 ----~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~-~~~~~~L~~L~~-~d~~vr~~aL~~l~  307 (591)
T 2vgl_B          234 ----DREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLL-KKLAPPLVTLLS-GEPEVQYVALRNIN  307 (591)
T ss_dssp             ----HHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHH-HHTHHHHHHHTT-SCHHHHHHHHHHHH
T ss_pred             ----hHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHH-HHHHHHHHHHhc-CCccHHHHHHHHHH
Confidence                233467888888889999999999999999998742   233333333 245566666554 67788888888888


Q ss_pred             HhhcCCchhh------------------HHHh-------hC----CChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHH
Q 011328          268 NIVTGDDMQT------------------QCII-------NH----QALPCLLDLLTQNYKKSIKKEACWTISNITAGNVN  318 (488)
Q Consensus       268 ~l~~~~~~~~------------------~~~~-------~~----~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~  318 (488)
                      .++...+...                  ...+       +.    .+++.|...+.+. +.++|..+++++++++...+.
T Consensus       308 ~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~~l~~~~nv~~iv~~L~~~l~~~-d~~~r~~~v~aI~~la~~~~~  386 (591)
T 2vgl_B          308 LIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQVLAELKEYATEV-DVDFVRKAVRAIGRCAIKVEQ  386 (591)
T ss_dssp             HHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHHHTCCSSTHHHHHHHHHHHTTSS-CHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHhChHHHHHHHHhheeccCChHHHHHHHHHHHHHHCChhhHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHhChh
Confidence            8875322111                  0000       11    2345556666677 889999999999999986554


Q ss_pred             HHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhcc
Q 011328          319 QIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS  356 (488)
Q Consensus       319 ~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~  356 (488)
                      ...     .+++.|++++......++..+..++.++..
T Consensus       387 ~~~-----~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~  419 (591)
T 2vgl_B          387 SAE-----RCVSTLLDLIQTKVNYVVQEAIVVIRDIFR  419 (591)
T ss_dssp             HHH-----HHHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred             HHH-----HHHHHHHHHHcccchHHHHHHHHHHHHHHH
Confidence            322     245666777766666666666666666643

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=99.70  E-value=2.4e-14  Score=139.52  Aligned_cols=373  Identities=10%  Similarity=0.091  Sum_probs=265.4

Q ss_pred             hhhccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHH-HcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCC
Q 011328           27 LQLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVI-QSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGT  105 (488)
Q Consensus        27 ~~~~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~  105 (488)
                      +.-+.++.|+.+|.+++..+|..++..|..++........+.+. ..++++.|+.+|+++. +.+|..++..|.+++.++
T Consensus       119 ~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~r-E~iRneallLL~~Lt~~n  197 (651)
T 3grl_A          119 KQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSR-EVIRNDGVLLLQALTRSN  197 (651)
T ss_dssp             HSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSS-HHHHHHHHHHHHHHHTTC
T ss_pred             cCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCch-HHHHHHHHHHHHHHhcCC
Confidence            34588999999999999999999999999998876333555566 4599999999999998 899999999999999999


Q ss_pred             chhhHHHHhCCCHHHHHHhhCCCC----HHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhccccc-----HhHH
Q 011328          106 SENTRVVIDHGAVPIFVRLLSSPT----DDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAK-----LSML  176 (488)
Q Consensus       106 ~~~~~~~~~~g~i~~L~~~L~~~~----~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~-----~~v~  176 (488)
                      ++.++.+.-.|+++.|+.+++.+.    ..+.+-|+.++.+|.+.++..+..+.+.+.++.|..++....+     ....
T Consensus       198 ~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~  277 (651)
T 3grl_A          198 GAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKV  277 (651)
T ss_dssp             HHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHH
T ss_pred             HHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHH
Confidence            999999999999999999998743    4888999999999999999899999999999999999842221     1122


Q ss_pred             HH---HHHHHHHhhcCCCC-------CChhhhhchHHHHHHhhccC--ChhHHHHHHHHHHHhccCCchhHHHHHHhC--
Q 011328          177 RN---ATWTLSNFCRGKPQ-------PLFEQTRPALPALERLIHSN--DDEVLTDACWALSYLSDGTNDKIQAVIEAG--  242 (488)
Q Consensus       177 ~~---a~~~L~~l~~~~~~-------~~~~~~~~~~~~l~~ll~~~--~~~v~~~al~~L~~l~~~~~~~~~~~~~~~--  242 (488)
                      .+   ++.++.-++.....       .......|+++.+++++...  ...++..++.+++.+..+++...+.+.+..  
T Consensus       278 ~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp  357 (651)
T 3grl_A          278 TNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAP  357 (651)
T ss_dssp             HHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEES
T ss_pred             HHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCC
Confidence            33   55555666554321       12334578899999998865  678999999999999998877666665532  


Q ss_pred             -------CHHHHHHhcCC-CCcchHhHHHHHHhHhhcCCchhhHHHhhC----------C---ChHHHHHHhcccchhhH
Q 011328          243 -------VCPRLVELLRH-PSPSVLIPALRTVGNIVTGDDMQTQCIINH----------Q---ALPCLLDLLTQNYKKSI  301 (488)
Q Consensus       243 -------~l~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~----------~---~~~~L~~lL~~~~~~~v  301 (488)
                             ++..|+.++.+ ....+|.+|+.++..+..+++.....+...          .   .-..+..-+-+. ++--
T Consensus       358 ~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~N~~~Q~~i~~~llp~~~~~~~~~~s~g~ll~~~l~s~-d~~~  436 (651)
T 3grl_A          358 SNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKNQKGQGEIVSTLLPSTIDATGNTVSAGQLLCGGLFST-DSLS  436 (651)
T ss_dssp             SSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTSSCCCCCTTSSSCHHHHHHHHHTSS-CHHH
T ss_pred             CCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHhCCHHHHHHHHHhcCCcccccCCCCCCcchhhhhhhccC-chHH
Confidence                   33334444544 456889999999999999887544444321          0   112334444444 4433


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHc-----------CChHHHHHHHhcC-ChhHHHHHHHHHHHhccCCCHHHHHHHHHC
Q 011328          302 KKEACWTISNITAGNVNQIQAIIEA-----------GIIGPLVNLLLNA-EFEIKKEAAWAISNATSGGSNEQIKFLVSQ  369 (488)
Q Consensus       302 ~~~a~~~L~nl~~~~~~~~~~l~~~-----------~~l~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~  369 (488)
                      -..|+.++..+...+++....+..-           ..++.+...|..+ ++.++.--+..|+.... +++.....+...
T Consensus       437 ~wfAavil~hll~~n~~~K~~~l~v~l~~~~ge~~vtliq~~~~~L~~~~~~ri~vgyL~LL~~WL~-e~p~AV~dFL~~  515 (651)
T 3grl_A          437 NWCAAVALAHALQENATQKEQLLRVQLATSIGNPPVSLLQQCTNILSQGSKIQTRVGLLMLLCTWLS-NCPIAVTHFLHN  515 (651)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHTTCBCCCCTTCCCCBHHHHHHHHTTTTCCHHHHHHHHHHHHHHHT-TCHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhCcccccCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHHHHh-CChHHHHHHHcC
Confidence            4568888888888877776655431           1255556666543 55565555666666655 456766666665


Q ss_pred             C-ChHHHHhhcCC--CCHH--HHHHHHHHHHHHHHhhh
Q 011328          370 G-CIKPLCDLLNC--PDPR--IVTVCLEGLENILKAGE  402 (488)
Q Consensus       370 ~-~i~~L~~ll~~--~~~~--v~~~al~~L~~l~~~~~  402 (488)
                      + .+..|+..+.+  ++.+  ++-.+.-.|+-......
T Consensus       516 ~s~l~~L~~~i~~~~~~~~~lvqGL~a~LLGi~yef~~  553 (651)
T 3grl_A          516 SANVPFLTGQIAENLGEEEQLVQGLCALLLGISIYFND  553 (651)
T ss_dssp             TTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHTCC
T ss_pred             CchHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccC
Confidence            5 58999987743  2222  33334444554445443

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.68  E-value=3.4e-15  Score=136.82  Aligned_cols=259  Identities=15%  Similarity=0.162  Sum_probs=202.1

Q ss_pred             HHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCc
Q 011328           69 VIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSP  148 (488)
Q Consensus        69 ~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~  148 (488)
                      ......++.|++.|.+++ +.+|..|+++|+++..  +         +.++.|+.++.++++.+|..++++|+.+.....
T Consensus        19 ~~~~~~i~~L~~~L~~~~-~~vr~~A~~~L~~~~~--~---------~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~   86 (280)
T 1oyz_A           19 QCKKLNDDELFRLLDDHN-SLKRISSARVLQLRGG--Q---------DAVRLAIEFCSDKNYIRRDIGAFILGQIKICKK   86 (280)
T ss_dssp             HHHTSCHHHHHHHTTCSS-HHHHHHHHHHHHHHCC--H---------HHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTT
T ss_pred             HHHHhhHHHHHHHHHcCC-HHHHHHHHHHHHccCC--c---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhccccc
Confidence            345678999999999988 9999999999999873  1         357889999999999999999999999864332


Q ss_pred             hhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhc
Q 011328          149 KCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLS  228 (488)
Q Consensus       149 ~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~  228 (488)
                      ....      .++.+...+..++++.++..++++|..+....+    .....+++.+..++.++++.++..++++|+.+.
T Consensus        87 ~~~~------l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~----~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~  156 (280)
T 1oyz_A           87 CEDN------VFNILNNMALNDKSACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFDKSTNVRRATAFAISVIN  156 (280)
T ss_dssp             THHH------HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-
T ss_pred             cchH------HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCC----cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcC
Confidence            2111      223333333367889999999999999975321    123467899999999999999999999999875


Q ss_pred             cCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHH
Q 011328          229 DGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWT  308 (488)
Q Consensus       229 ~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~  308 (488)
                      .           .+.++.|..++.++++.+|..++++|+.+....+         ..++.+...++++ ++.+|..|+++
T Consensus       157 ~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~---------~~~~~L~~~l~d~-~~~vR~~A~~a  215 (280)
T 1oyz_A          157 D-----------KATIPLLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDK-NEEVRIEAIIG  215 (280)
T ss_dssp             -------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCS-CHHHHHHHHHH
T ss_pred             C-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH---------HHHHHHHHHhcCC-CHHHHHHHHHH
Confidence            3           2578999999999999999999999999853222         3567889999988 89999999999


Q ss_pred             HHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCC-CCHHHH
Q 011328          309 ISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNC-PDPRIV  387 (488)
Q Consensus       309 L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~-~~~~v~  387 (488)
                      |+++..           ...++.|+..+.+++  ++..++.+|+.+..   +         ..++.|.+++.+ ++++++
T Consensus       216 L~~~~~-----------~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~---~---------~~~~~L~~~l~~~~~~~~~  270 (280)
T 1oyz_A          216 LSYRKD-----------KRVLSVLCDELKKNT--VYDDIIEAAGELGD---K---------TLLPVLDTMLYKFDDNEII  270 (280)
T ss_dssp             HHHTTC-----------GGGHHHHHHHHTSSS--CCHHHHHHHHHHCC---G---------GGHHHHHHHHTTSSCCHHH
T ss_pred             HHHhCC-----------HhhHHHHHHHhcCcc--HHHHHHHHHHhcCc---h---------hhhHHHHHHHhcCCCcHHH
Confidence            999852           247888888888754  89999999999853   1         367788888864 566777


Q ss_pred             HHHHHHHH
Q 011328          388 TVCLEGLE  395 (488)
Q Consensus       388 ~~al~~L~  395 (488)
                      ..++..+.
T Consensus       271 ~~~~~~l~  278 (280)
T 1oyz_A          271 TSAIDKLK  278 (280)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHhh
Confidence            77776664

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=99.67  E-value=8.2e-15  Score=156.16  Aligned_cols=403  Identities=12%  Similarity=0.132  Sum_probs=269.3

Q ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh-
Q 011328           31 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT-  109 (488)
Q Consensus        31 ~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~-  109 (488)
                      .++.+.+.+.+.++..+..|+.++..++............ ..+++.+++.+.+++ +.+|..++++++.++....... 
T Consensus       370 l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l-~~il~~l~~~l~d~~-~~vr~~a~~~l~~l~~~~~~~~~  447 (861)
T 2bpt_A          370 VLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYV-HQALPSILNLMNDQS-LQVKETTAWCIGRIADSVAESID  447 (861)
T ss_dssp             HHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHGGGCSC-HHHHHHHHHHHHHHHHHHGGGSC
T ss_pred             HHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHcCCCc-HHHHHHHHHHHHHHHHHhhhhcC
Confidence            3455566667888999999999999988653212222222 257889999999988 9999999999999986211100 


Q ss_pred             HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCC-----chhHHHHHhcCChHHHHHHhcc-cccHhHHHHHHHHH
Q 011328          110 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDS-----PKCRDLVLSNGALMPLLAQFNE-HAKLSMLRNATWTL  183 (488)
Q Consensus       110 ~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~-----~~~~~~~~~~~~l~~L~~ll~~-~~~~~v~~~a~~~L  183 (488)
                      ..-.-..+++.++..++++ +.++..+++++.+++...     ......+  ...++.++..+.. +.++.++..++.++
T Consensus       448 ~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~--~~il~~L~~~l~~~d~~~~vr~~a~~al  524 (861)
T 2bpt_A          448 PQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFY--PALVDGLIGAANRIDNEFNARASAFSAL  524 (861)
T ss_dssp             TTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGH--HHHHHHHHHHHTCSCCGGGHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHH--HHHHHHHHHHHhCcCcchHHHHHHHHHH
Confidence            0000113577888888775 999999999999987531     1121222  1245667777742 33478999999999


Q ss_pred             HHhhcCCCCCChhhhhchHHHHHHhhccC---------------ChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHH
Q 011328          184 SNFCRGKPQPLFEQTRPALPALERLIHSN---------------DDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLV  248 (488)
Q Consensus       184 ~~l~~~~~~~~~~~~~~~~~~l~~ll~~~---------------~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~  248 (488)
                      ..++...+.........++|.++..+...               ...++..++.++..++...+........ .+++.+.
T Consensus       525 ~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~l~~~l~  603 (861)
T 2bpt_A          525 TTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVAD-MLMGLFF  603 (861)
T ss_dssp             HHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHH-HHHHHHH
T ss_pred             HHHHHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH-HHHHHHH
Confidence            99988765444444566777777776531               3457788999999888654432222222 5677788


Q ss_pred             HhcCCCCc-chHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcC
Q 011328          249 ELLRHPSP-SVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAG  327 (488)
Q Consensus       249 ~lL~~~~~-~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~  327 (488)
                      ..+.+.++ .++..++.+++.++..........+. .+++.+...+.++ ++.+|..++.+++.++....+...... ..
T Consensus       604 ~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~-~i~~~l~~~l~~~-~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~  680 (861)
T 2bpt_A          604 RLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLE-TFSPYLLKALNQV-DSPVSITAVGFIADISNSLEEDFRRYS-DA  680 (861)
T ss_dssp             HHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHH-HHHHHHHHHHHCT-TSHHHHHHHHHHHHHHHHTGGGGHHHH-HH
T ss_pred             HHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHH-HHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHhchhccchH-HH
Confidence            88877766 89999999999998754443333333 4788888888776 888999999999999874333333333 24


Q ss_pred             ChHHHHHHHhcCC--hhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCC-----------HHHHHHHHHHH
Q 011328          328 IIGPLVNLLLNAE--FEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPD-----------PRIVTVCLEGL  394 (488)
Q Consensus       328 ~l~~L~~ll~~~~--~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~-----------~~v~~~al~~L  394 (488)
                      +++.++..+.+++  .++|..++.+++.++.........++-  .+++.+.+.++...           ..++..++.++
T Consensus       681 l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~--~~l~~l~~~~~~~~~~~d~d~~~~~~~vr~~~l~~~  758 (861)
T 2bpt_A          681 MMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLN--DIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAY  758 (861)
T ss_dssp             HHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHH--HHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhhhHHHHHH--HHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHH
Confidence            7888888888764  889999999999998754434444443  36777777776431           35778888888


Q ss_pred             HHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCC----CHHHHHHHHHHHHHhcCC
Q 011328          395 ENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHD----NTEIYEKAVKILETYWVE  454 (488)
Q Consensus       395 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~~----~~~v~~~a~~~l~~~~~~  454 (488)
                      ..++.......        ..+...+.+  .++.+.....+.    +..++..|..++..+...
T Consensus       759 ~~i~~~l~~~~--------~~~~~~~~~--i~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~~~  812 (861)
T 2bpt_A          759 VGIVAGLHDKP--------EALFPYVGT--IFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAM  812 (861)
T ss_dssp             HHHHHHTTTCH--------HHHGGGHHH--HHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHccCH--------HHHHHHHHH--HHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHHH
Confidence            88875432100        001222221  245555555442    789999999999888653

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.66  E-value=9.1e-15  Score=134.00  Aligned_cols=255  Identities=15%  Similarity=0.115  Sum_probs=200.0

Q ss_pred             hccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchh
Q 011328           29 LESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN  108 (488)
Q Consensus        29 ~~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~  108 (488)
                      ...++.|++.|.++++.++..|++.|.++..            .+.++.|++++++++ +.+|..|+++|+.+... +..
T Consensus        22 ~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~------------~~~~~~L~~~l~d~~-~~vR~~A~~aL~~l~~~-~~~   87 (280)
T 1oyz_A           22 KLNDDELFRLLDDHNSLKRISSARVLQLRGG------------QDAVRLAIEFCSDKN-YIRRDIGAFILGQIKIC-KKC   87 (280)
T ss_dssp             TSCHHHHHHHTTCSSHHHHHHHHHHHHHHCC------------HHHHHHHHHHHTCSS-HHHHHHHHHHHHHSCCC-TTT
T ss_pred             HhhHHHHHHHHHcCCHHHHHHHHHHHHccCC------------chHHHHHHHHHcCCC-HHHHHHHHHHHHHhccc-ccc
Confidence            3679999999999999999999999999642            236788999999998 89999999999998752 221


Q ss_pred             hHHHHhCCCHHHHH-HhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhh
Q 011328          109 TRVVIDHGAVPIFV-RLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFC  187 (488)
Q Consensus       109 ~~~~~~~g~i~~L~-~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~  187 (488)
                      ..     .+++.|. .+++++++.+|..++++|+.+....+....     ..++.++..+ .+.++.++..++++|..+.
T Consensus        88 ~~-----~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~~~-----~~~~~L~~~l-~d~~~~vR~~a~~aL~~~~  156 (280)
T 1oyz_A           88 ED-----NVFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSP-----KIVEQSQITA-FDKSTNVRRATAFAISVIN  156 (280)
T ss_dssp             HH-----HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHHT-TCSCHHHHHHHHHHHHTC-
T ss_pred             ch-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcccH-----HHHHHHHHHh-hCCCHHHHHHHHHHHHhcC
Confidence            11     1234444 246778999999999999999744332212     2467788888 7889999999999999875


Q ss_pred             cCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHh
Q 011328          188 RGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVG  267 (488)
Q Consensus       188 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~  267 (488)
                      ..          ..++.++.++.++++.++..++++|+.+....+         ..++.|..++.++++.+|..|+.+|+
T Consensus       157 ~~----------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~---------~~~~~L~~~l~d~~~~vR~~A~~aL~  217 (280)
T 1oyz_A          157 DK----------ATIPLLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDKNEEVRIEAIIGLS  217 (280)
T ss_dssp             ------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred             CH----------HHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH---------HHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence            42          478999999999999999999999999853332         34678889999999999999999999


Q ss_pred             HhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC-ChhHHHH
Q 011328          268 NIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA-EFEIKKE  346 (488)
Q Consensus       268 ~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~-~~~v~~~  346 (488)
                      .+..           ...++.|...++++ +  +|..++++|+.+..  +         ..++.|..++.+. ++++...
T Consensus       218 ~~~~-----------~~~~~~L~~~l~d~-~--vr~~a~~aL~~i~~--~---------~~~~~L~~~l~~~~~~~~~~~  272 (280)
T 1oyz_A          218 YRKD-----------KRVLSVLCDELKKN-T--VYDDIIEAAGELGD--K---------TLLPVLDTMLYKFDDNEIITS  272 (280)
T ss_dssp             HTTC-----------GGGHHHHHHHHTSS-S--CCHHHHHHHHHHCC--G---------GGHHHHHHHHTTSSCCHHHHH
T ss_pred             HhCC-----------HhhHHHHHHHhcCc-c--HHHHHHHHHHhcCc--h---------hhhHHHHHHHhcCCCcHHHHH
Confidence            9862           24678899999776 3  88999999998853  2         4788899999764 6778877


Q ss_pred             HHHHHH
Q 011328          347 AAWAIS  352 (488)
Q Consensus       347 a~~aL~  352 (488)
                      +..+|.
T Consensus       273 ~~~~l~  278 (280)
T 1oyz_A          273 AIDKLK  278 (280)
T ss_dssp             HHHHHT
T ss_pred             HHHHhh
Confidence            777764

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=99.66  E-value=1.3e-14  Score=154.68  Aligned_cols=397  Identities=14%  Similarity=0.175  Sum_probs=265.9

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCC----------------CccHHHHHHcCCHHHHHHhhcCC------CC
Q 011328           30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIER----------------SPPINEVIQSGVVPRFIEFLSRD------DF   87 (488)
Q Consensus        30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~----------------~~~~~~~~~~~~i~~L~~lL~~~------~~   87 (488)
                      ..++.+...+.+.++.++..|+..+..++....                ........ ..+++.++..+...      +.
T Consensus       266 ~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~il~~ll~~l~~~~~d~~d~~  344 (861)
T 2bpt_A          266 ALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSI-KDVVPNLLNLLTRQNEDPEDDD  344 (861)
T ss_dssp             THHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHH-HHHHHHHHHHTTCCCCC-CCCC
T ss_pred             HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHH-HHHHHHHHHHHHhccccccccc
Confidence            345556677788899999999999988765420                01111122 45788888888652      12


Q ss_pred             hhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCc-hhHHHHHhcCChHHHHHH
Q 011328           88 PQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSP-KCRDLVLSNGALMPLLAQ  166 (488)
Q Consensus        88 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~l~~L~~l  166 (488)
                      ..++..+..+|..++...++.   ++ ..+++.+...+.+.++..|+.++++++.++.... ..-..... ..++.++..
T Consensus       345 ~~~r~~a~~~L~~l~~~~~~~---~~-~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~-~il~~l~~~  419 (861)
T 2bpt_A          345 WNVSMSAGACLQLFAQNCGNH---IL-EPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVH-QALPSILNL  419 (861)
T ss_dssp             CHHHHHHHHHHHHHHHHHGGG---GH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHH-HHHHHHHHG
T ss_pred             CcHHHHHHHHHHHHHHHccHh---HH-HHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHH-HHHHHHHHH
Confidence            478999999999988622211   11 1346777778888899999999999999997643 21111111 356677777


Q ss_pred             hcccccHhHHHHHHHHHHHhhcCCCC--CChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCc----hhHHHHHH
Q 011328          167 FNEHAKLSMLRNATWTLSNFCRGKPQ--PLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTN----DKIQAVIE  240 (488)
Q Consensus       167 l~~~~~~~v~~~a~~~L~~l~~~~~~--~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~----~~~~~~~~  240 (488)
                      + .+.++.++..++|++..++.....  ........+++.++..+.++ +.++..+++++.+++....    ....... 
T Consensus       420 l-~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~-  496 (861)
T 2bpt_A          420 M-NDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFY-  496 (861)
T ss_dssp             G-GCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGH-
T ss_pred             c-CCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHH-
Confidence            7 667899999999999999865321  12345678889999998775 8999999999999885421    1122222 


Q ss_pred             hCCHHHHHHhcCCCC--cchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcc--------------cchhhHHHH
Q 011328          241 AGVCPRLVELLRHPS--PSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQ--------------NYKKSIKKE  304 (488)
Q Consensus       241 ~~~l~~L~~lL~~~~--~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~--------------~~~~~v~~~  304 (488)
                      ..+++.++..+.+.+  +.+|..++.+++.++...+......+. .+++.+++.+..              .....++..
T Consensus       497 ~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~  575 (861)
T 2bpt_A          497 PALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSA-SISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSN  575 (861)
T ss_dssp             HHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHH-HHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHH-HHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHH
Confidence            256788888887543  789999999999998765544333332 355666666542              114567889


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCh-hHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCC
Q 011328          305 ACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEF-EIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPD  383 (488)
Q Consensus       305 a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~-~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~  383 (488)
                      ++.++.+++............ .+++.++..+...+. .++..++.+++.++.....+...++-.  +++.|.+.+++++
T Consensus       576 ~~~~l~~l~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~--i~~~l~~~l~~~~  652 (861)
T 2bpt_A          576 ILTVLAAVIRKSPSSVEPVAD-MLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLET--FSPYLLKALNQVD  652 (861)
T ss_dssp             HHHHHHHHHHHCGGGTGGGHH-HHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHH--HHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHhhhhhHHHHH-HHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHHH--HHHHHHHHhcccc
Confidence            999999998743332222222 477888888888776 899999999999986543344444433  7888888888888


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCC--HHHHHHHHHHHHHhc
Q 011328          384 PRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDN--TEIYEKAVKILETYW  452 (488)
Q Consensus       384 ~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~~~--~~v~~~a~~~l~~~~  452 (488)
                      ++++..++.++..++......           +...+.  ..++.+.+.+.+++  ++++..+...+..+.
T Consensus       653 ~~vr~~a~~~l~~l~~~~~~~-----------~~~~~~--~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~  710 (861)
T 2bpt_A          653 SPVSITAVGFIADISNSLEED-----------FRRYSD--AMMNVLAQMISNPNARRELKPAVLSVFGDIA  710 (861)
T ss_dssp             SHHHHHHHHHHHHHHHHTGGG-----------GHHHHH--HHHHHHHHHHHCTTCCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhchh-----------ccchHH--HHHHHHHHHhCCccccHhhhHHHHHHHHHHH
Confidence            899999999999988765421           222221  22444555554443  677777766665443

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=99.65  E-value=1e-14  Score=148.35  Aligned_cols=362  Identities=14%  Similarity=0.095  Sum_probs=260.3

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh
Q 011328           30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT  109 (488)
Q Consensus        30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~  109 (488)
                      -.++.+.+.|+++++.++..|+++|.++...   +    +. ..+++.+.++|.+++ +.+|..|+.++.++...+++..
T Consensus       107 l~in~l~kDL~~~n~~vr~lAL~~L~~i~~~---~----~~-~~l~~~l~~~L~~~~-~~VRk~A~~al~~l~~~~p~~v  177 (618)
T 1w63_A          107 LMTNCIKNDLNHSTQFVQGLALCTLGCMGSS---E----MC-RDLAGEVEKLLKTSN-SYLRKKAALCAVHVIRKVPELM  177 (618)
T ss_dssp             HHHHHHHHHHSCSSSHHHHHHHHHHHHHCCH---H----HH-HHHHHHHHHHHHSCC-HHHHHHHHHHHHHHHHHCGGGG
T ss_pred             HHHHHHHHhcCCCCHhHHHHHHHHHHhcCCH---H----HH-HHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHChHHH
Confidence            3567788899999999999999999997531   1    22 356888999999998 9999999999999998666543


Q ss_pred             HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcc--------------cccHhH
Q 011328          110 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE--------------HAKLSM  175 (488)
Q Consensus       110 ~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~--------------~~~~~v  175 (488)
                      .     ++++.+..++.+.++.++..|+.+|..++..+++....+  ...++.++..|.+              ..++-.
T Consensus       178 ~-----~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~  250 (618)
T 1w63_A          178 E-----MFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHF--RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFL  250 (618)
T ss_dssp             G-----GGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHH--HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHH
T ss_pred             H-----HHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHH--HHHHHHHHHHHHHHHcCCCCccccccCCCCChH
Confidence            2     567888889999999999999999999987765432222  2467778877743              246778


Q ss_pred             HHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhc------cCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHH
Q 011328          176 LRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH------SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVE  249 (488)
Q Consensus       176 ~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~------~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~  249 (488)
                      +..++.+|..++...+    .......+.+..++.      +.+..+...+++++..+.... .    +.. .+++.|..
T Consensus       251 q~~il~~L~~l~~~~~----~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~~-~----l~~-~a~~~L~~  320 (618)
T 1w63_A          251 QVRILRLLRILGRNDD----DSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSES-G----LRV-LAINILGR  320 (618)
T ss_dssp             HHHHHHHHHHHTTTCH----HHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCCH-H----HHH-HHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCH----HHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCCH-H----HHH-HHHHHHHH
Confidence            8889999999887542    112344555555543      234678889999998875421 1    111 45678888


Q ss_pred             hcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCCh
Q 011328          250 LLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGII  329 (488)
Q Consensus       250 lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l  329 (488)
                      ++.++++.+|..|+.+|+.++...+....     .....++..+.++ +..+|..|+.++..++....  ...     ++
T Consensus       321 ~L~~~d~~vr~~aL~~L~~i~~~~p~~~~-----~~~~~i~~~l~d~-d~~Ir~~alelL~~l~~~~n--v~~-----iv  387 (618)
T 1w63_A          321 FLLNNDKNIRYVALTSLLKTVQTDHNAVQ-----RHRSTIVDCLKDL-DVSIKRRAMELSFALVNGNN--IRG-----MM  387 (618)
T ss_dssp             HHTCSSTTTHHHHHHHHHHHHHHHHHHHG-----GGHHHHHHGGGSS-CHHHHHHHHHHHHHHCCSSS--THH-----HH
T ss_pred             HHhCCCCchHHHHHHHHHHHHhhCHHHHH-----HHHHHHHHHccCC-ChhHHHHHHHHHHHHccccc--HHH-----HH
Confidence            89999999999999999999975543222     3566788899988 89999999999999987421  111     45


Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCC
Q 011328          330 GPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGN  409 (488)
Q Consensus       330 ~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~  409 (488)
                      +.|...+.+.+.++|..++.+++.++....+....      +++.|+++++.....+...++..+..++...+..     
T Consensus       388 ~eL~~~l~~~d~e~r~~~v~~I~~la~k~~~~~~~------~v~~ll~lL~~~~~~v~~~~~~~l~~ii~~~p~l-----  456 (618)
T 1w63_A          388 KELLYFLDSCEPEFKADCASGIFLAAEKYAPSKRW------HIDTIMRVLTTAGSYVRDDAVPNLIQLITNSVEM-----  456 (618)
T ss_dssp             HHHHHHHHHCCHHHHHHHHHHHHHHHHSSCCCHHH------HHHHHHHHHHHTGGGSCSSHHHHHHHHHHHSCST-----
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHHHhCccHHH------HHHHHHHHHHhccchhHHHHHHHHHHHHhcChhH-----
Confidence            67888888889999999999999999754322222      3677778887766666666777777777654432     


Q ss_pred             CCccchHHHHHHhhccHHHHHHhhcC--CCHHHHHHHHHHHHHhcC
Q 011328          410 TGGVNLFAQAIDDAEGLEKIENLQSH--DNTEIYEKAVKILETYWV  453 (488)
Q Consensus       410 ~~~~~~~~~~l~~~g~~~~L~~l~~~--~~~~v~~~a~~~l~~~~~  453 (488)
                             +..     ++..|.++..+  ..+.+...+.|++..|-+
T Consensus       457 -------~~~-----~v~~L~~~l~~~~~~~~~~~~~~wilGEy~~  490 (618)
T 1w63_A          457 -------HAY-----TVQRLYKAILGDYSQQPLVQVAAWCIGEYGD  490 (618)
T ss_dssp             -------HHH-----HHHHHHHHHHHCCSCSHHHHHHHHHHHHHHH
T ss_pred             -------HHH-----HHHHHHHHHhcccccHHHHHHHHHHHhhhHH
Confidence                   111     12333333322  334555679999998864

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=99.64  E-value=2.4e-14  Score=152.81  Aligned_cols=399  Identities=16%  Similarity=0.178  Sum_probs=253.6

Q ss_pred             ccHHHHHHHhcCC--CHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCch
Q 011328           30 ESLPAMVAGVWSD--DRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSE  107 (488)
Q Consensus        30 ~~i~~l~~~L~s~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~  107 (488)
                      ..++.+.+.+.++  ++.+|..|+.++..++..-............+++.+.+.+.+.+ +++|..++.+|..++...++
T Consensus       172 ~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~-~~vr~~a~~~l~~l~~~~~~  250 (876)
T 1qgr_A          172 EILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPD-TRVRVAALQNLVKIMSLYYQ  250 (876)
T ss_dssp             HHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHHHHSGG
T ss_pred             HHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHHhHH
Confidence            4466677778776  68999999999999875421000001111236777788887777 89999999999999975555


Q ss_pred             hhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCch------------------hHHHH--HhcCChHHHHHHh
Q 011328          108 NTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK------------------CRDLV--LSNGALMPLLAQF  167 (488)
Q Consensus       108 ~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~------------------~~~~~--~~~~~l~~L~~ll  167 (488)
                      .....+...+++.++..+.+.++.++..++..+..++.....                  .....  .-...++.++..+
T Consensus       251 ~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l  330 (876)
T 1qgr_A          251 YMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTL  330 (876)
T ss_dssp             GCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHh
Confidence            444444557889988888888999999999999888743110                  00000  0012455666666


Q ss_pred             cc------cccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCc-hhHHHHHH
Q 011328          168 NE------HAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTN-DKIQAVIE  240 (488)
Q Consensus       168 ~~------~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~-~~~~~~~~  240 (488)
                      .+      +.+..++..+..++..++...+.   .....+++.+...+.++++.++..++++++.++.... +...... 
T Consensus       331 ~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~---~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-  406 (876)
T 1qgr_A          331 TKQDENDDDDDWNPCKAAGVCLMLLATCCED---DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-  406 (876)
T ss_dssp             TCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG---GGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-
T ss_pred             hcccccccccccHHHHHHHHHHHHHHHHCcH---hhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-
Confidence            32      23457888999999888865431   2345778888888888999999999999999997654 3333333 


Q ss_pred             hCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhh--HHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCH-
Q 011328          241 AGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQT--QCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNV-  317 (488)
Q Consensus       241 ~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~--~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~-  317 (488)
                      ..+++.++..+.++++.+|..|++++++++...+...  ...+ ..+++.++..+.+.  +.++..+++++.+++.... 
T Consensus       407 ~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l-~~~l~~l~~~l~~~--~~v~~~a~~al~~l~~~~~~  483 (876)
T 1qgr_A          407 IQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYL-APLLQCLIEGLSAE--PRVASNVCWAFSSLAEAAYE  483 (876)
T ss_dssp             HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTH-HHHHHHHHHHTTSC--HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHH-HHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHHhhh
Confidence            3578999999999999999999999999997544321  1111 24667778888663  7789999999999885311 


Q ss_pred             -------------HHHHHHHHcCChHHHHHHHhcC---ChhHHHHHH---------------------------------
Q 011328          318 -------------NQIQAIIEAGIIGPLVNLLLNA---EFEIKKEAA---------------------------------  348 (488)
Q Consensus       318 -------------~~~~~l~~~~~l~~L~~ll~~~---~~~v~~~a~---------------------------------  348 (488)
                                   +.....+ ..+++.|+..+...   +..++..+.                                 
T Consensus       484 ~~~~~~~~~~~~~~~l~~~~-~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~  562 (876)
T 1qgr_A          484 AADVADDQEEPATYCLSSSF-ELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVL  562 (876)
T ss_dssp             TTSCTTSCCCCCCCSSTTTH-HHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccchhhhHhH-HHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHH
Confidence                         0011111 12445555554432   223444444                                 


Q ss_pred             -----------------------HHHHHhccCCC-HHHHHHHHHCCChHHHHhhcCCCC--HHHHHHHHHHHHHHHHhhh
Q 011328          349 -----------------------WAISNATSGGS-NEQIKFLVSQGCIKPLCDLLNCPD--PRIVTVCLEGLENILKAGE  402 (488)
Q Consensus       349 -----------------------~aL~~l~~~~~-~~~~~~l~~~~~i~~L~~ll~~~~--~~v~~~al~~L~~l~~~~~  402 (488)
                                             .++..++...+ .....++  ..+++.+..+++...  +.++..++.++..++....
T Consensus       563 ~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~--~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~  640 (876)
T 1qgr_A          563 QMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQIS--DVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLG  640 (876)
T ss_dssp             TTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTH--HHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHG
T ss_pred             HHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHH--HHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHH
Confidence                                   44444443333 2222221  125667777777654  4788899999999986533


Q ss_pred             hhhccCCCCccchHHHHHHhhccHHHHHHhhcCC-CHHHHHHHHHHHHHhc
Q 011328          403 AEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHD-NTEIYEKAVKILETYW  452 (488)
Q Consensus       403 ~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~~-~~~v~~~a~~~l~~~~  452 (488)
                      ..-        .++...     .++.+...+.+. +++++..|...+..+.
T Consensus       641 ~~~--------~~~~~~-----~~~~l~~~l~~~~~~~vr~~a~~~l~~l~  678 (876)
T 1qgr_A          641 GEF--------LKYMEA-----FKPFLGIGLKNYAEYQVCLAAVGLVGDLC  678 (876)
T ss_dssp             GGG--------GGGHHH-----HHHHHHHHHHHCTTHHHHHHHHHHHHHHH
T ss_pred             hhH--------HHHHHH-----HHHHHHHHHcCcchHHHHHHHHHHHHHHH
Confidence            211        112222     245555555544 7888888777766554

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=99.63  E-value=9.7e-15  Score=144.00  Aligned_cols=391  Identities=12%  Similarity=0.108  Sum_probs=267.9

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCC-ChhHHHHHHHHHHHhcCCCchhhH
Q 011328           32 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDD-FPQLQFEAAWALTNIASGTSENTR  110 (488)
Q Consensus        32 i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~-~~~v~~~a~~~L~~l~~~~~~~~~  110 (488)
                      +..++..+.++|..+|..|-..|.++....         ..+++..|..++.+++ ++.+|..|+..|.++.........
T Consensus         3 l~~~L~~~~s~d~~~r~~Ae~~L~~~~~~~---------~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~   73 (462)
T 1ibr_B            3 LITILEKTVSPDRLELEAAQKFLERAAVEN---------LPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIK   73 (462)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHhhC---------hHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHH
Confidence            445777778899999999999998854311         1246677778877652 489999999999998763311110


Q ss_pred             H--------H---HhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccc--cHhHHH
Q 011328          111 V--------V---IDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHA--KLSMLR  177 (488)
Q Consensus       111 ~--------~---~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~--~~~v~~  177 (488)
                      .        +   ....+-..++..+.++++.+ ..++.+++.++...... ..  -.+.++.++..+ .+.  ++.++.
T Consensus        74 ~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~-~~--w~~ll~~L~~~l-~~~~~~~~~r~  148 (462)
T 1ibr_B           74 AQYQQRWLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPV-NQ--WPELIPQLVANV-TNPNSTEHMKE  148 (462)
T ss_dssp             HHHHHHHHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGG-TC--CTTHHHHHHHHH-HCTTCCHHHHH
T ss_pred             HHHHhhhhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhccc-cc--cHHHHHHHHHHh-ccCCCCHHHHH
Confidence            0        0   01123456777788777778 88899999887532110 00  124677788888 555  888999


Q ss_pred             HHHHHHHHhhcCC-CCCChhhhhchHHHHHHhhccC--ChhHHHHHHHHHHHhccCCchhHH-HHHHhCCHHHHHHhcCC
Q 011328          178 NATWTLSNFCRGK-PQPLFEQTRPALPALERLIHSN--DDEVLTDACWALSYLSDGTNDKIQ-AVIEAGVCPRLVELLRH  253 (488)
Q Consensus       178 ~a~~~L~~l~~~~-~~~~~~~~~~~~~~l~~ll~~~--~~~v~~~al~~L~~l~~~~~~~~~-~~~~~~~l~~L~~lL~~  253 (488)
                      .++.+|..++... +.........+++.+...+.++  +..++..+++++.++...-.+... .....-+++.+...+.+
T Consensus       149 ~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~  228 (462)
T 1ibr_B          149 STLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQC  228 (462)
T ss_dssp             HHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCC
Confidence            9999999999753 2222334466888899999887  789999999999987643221110 01111246667777788


Q ss_pred             CCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHH---------------
Q 011328          254 PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVN---------------  318 (488)
Q Consensus       254 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~---------------  318 (488)
                      +++.++..++.++..++...+......+...+++.++..+++. ++.++..++..+..++.....               
T Consensus       229 ~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~  307 (462)
T 1ibr_B          229 PDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSD-IDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPP  307 (462)
T ss_dssp             SSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCS-SHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCS
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-chHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCc
Confidence            8899999999999999876554333333326777888888877 889999999999888753110               


Q ss_pred             ------HHHHHHHcCChHHHHHHHhcC-------ChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHH
Q 011328          319 ------QIQAIIEAGIIGPLVNLLLNA-------EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPR  385 (488)
Q Consensus       319 ------~~~~l~~~~~l~~L~~ll~~~-------~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~  385 (488)
                            ...... ..++|.++..+...       ++.+|..|+.+|..++.........     .+++.+...+.++++.
T Consensus       308 ~~~~~~~~~~~~-~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~~~~-----~~~~~l~~~l~~~~~~  381 (462)
T 1ibr_B          308 EHTSKFYAKGAL-QYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVP-----HVLPFIKEHIKNPDWR  381 (462)
T ss_dssp             SCCCCCHHHHHH-HHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHH-----HHHHHHHHHTTCSSHH
T ss_pred             cchhHHHHHHHh-hhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccHHHHH-----HHHHHHHHHhcCCChH
Confidence                  111111 23567777777532       4579999999999998654322222     3577888889999999


Q ss_pred             HHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCCC
Q 011328          386 IVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVEE  455 (488)
Q Consensus       386 v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~  455 (488)
                      ++..++.+++.+........          +...+  ...++.+..++.++++.|+..|.+.+.++...-
T Consensus       382 ~r~aal~~l~~l~~~~~~~~----------~~~~l--~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~  439 (462)
T 1ibr_B          382 YRDAAVMAFGCILEGPEPSQ----------LKPLV--IQAMPTLIELMKDPSVVVRDTAAWTVGRICELL  439 (462)
T ss_dssp             HHHHHHHHHHHTSSSSCTTT----------TCTTT--TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHG
T ss_pred             HHHHHHHHHHHHhcCCcHHH----------HHHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence            99999999999885322110          01111  345788888899999999999999999988654

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=99.61  E-value=8.3e-14  Score=153.77  Aligned_cols=407  Identities=12%  Similarity=0.139  Sum_probs=271.7

Q ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhH
Q 011328           31 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR  110 (488)
Q Consensus        31 ~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~  110 (488)
                      .++.+++.+.+.|+++|..|...|.+.+..... ..+.-....+++.+++.|.+++ +++|..|+.+|+.++...++.  
T Consensus         7 ~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~-~~~~~~~~~il~~Ll~~L~d~~-~~vR~~A~~~L~~l~~~~~~~--   82 (1230)
T 1u6g_C            7 HISNLLEKMTSSDKDFRFMATNDLMTELQKDSI-KLDDDSERKVVKMILKLLEDKN-GEVQNLAVKCLGPLVSKVKEY--   82 (1230)
T ss_dssp             HHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCC-SCCTTHHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHHTTSCHH--
T ss_pred             HHHHHHHhcCCCCHhHHHHHHHHHHHHHccccc-CCChhHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHhCCHH--
Confidence            467899999999999999999999987654311 1111112346788889998887 899999999999999754431  


Q ss_pred             HHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhH-----HHHHhcCChHHHHHHhcccccHhHHHHHHHHHHH
Q 011328          111 VVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR-----DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSN  185 (488)
Q Consensus       111 ~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~-----~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~  185 (488)
                      .+  ..+++.++..+.++++.+|..++.+|+.++.......     ..-.-...++.++..+.++.+..++..++.++..
T Consensus        83 ~~--~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~  160 (1230)
T 1u6g_C           83 QV--ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMAD  160 (1230)
T ss_dssp             HH--HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHH
T ss_pred             HH--HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHH
Confidence            11  1357888888888888999999999999875433210     0011123677888888435778999999999999


Q ss_pred             hhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCC-CcchHhHHHH
Q 011328          186 FCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP-SPSVLIPALR  264 (488)
Q Consensus       186 l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~v~~~a~~  264 (488)
                      ++...+..-......+++.+...+.+++..++..++.+++.++...++.   ++ ..+++.++..+.+. ++.++..++.
T Consensus       161 ~~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~---~~-~~~l~~l~~~L~~~~~~~~r~~a~~  236 (1230)
T 1u6g_C          161 MLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI---VF-VDLIEHLLSELSKNDSMSTTRTYIQ  236 (1230)
T ss_dssp             HHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-------C-TTHHHHHHHHHHHTCSSCSCTTHHH
T ss_pred             HHHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHH---HH-HHHHHHHHHHhccCCchhHHHHHHH
Confidence            9864322222345778888889999999999999999999999765432   11 24577777777543 3578888999


Q ss_pred             HHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh-------
Q 011328          265 TVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLL-------  337 (488)
Q Consensus       265 ~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~-------  337 (488)
                      +++.++...+......+ ..+++.++..+.+. ++.+|..++.++..++...++.....+. .+++.++..+.       
T Consensus       237 ~l~~l~~~~~~~~~~~l-~~l~~~ll~~l~d~-~~~vR~~a~~~l~~l~~~~~~~~~~~l~-~li~~ll~~l~~d~~~~~  313 (1230)
T 1u6g_C          237 CIAAISRQAGHRIGEYL-EKIIPLVVKFCNVD-DDELREYCIQAFESFVRRCPKEVYPHVS-TIINICLKYLTYDPNYNY  313 (1230)
T ss_dssp             HHHHHHHHSSGGGTTSC-TTHHHHHHHHHSSC-CTTTHHHHHHHHHHHHHCTTCCCHHHHH-HHHHHHTTCCCCC-----
T ss_pred             HHHHHHHHhHHHHHHHH-HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHChHHHHHhHH-HHHHHHHHHhCCCCCCCC
Confidence            99999875443322222 36889999999887 8899999999999988742221111111 13333333221       


Q ss_pred             ------------------------------cCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHH
Q 011328          338 ------------------------------NAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIV  387 (488)
Q Consensus       338 ------------------------------~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~  387 (488)
                                                    +..+.+|..|+.++..++.........++  ..+++.+...+.+.++.++
T Consensus       314 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~--~~l~~~l~~~l~d~~~~Vr  391 (1230)
T 1u6g_C          314 DDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFY--KTVSPALISRFKEREENVK  391 (1230)
T ss_dssp             -------------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHH--TTTHHHHHSTTSCSSSHHH
T ss_pred             cccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHH--HHHHHHHHHHcCCCchHHH
Confidence                                          11246799999999999874432122222  3578889899988899999


Q ss_pred             HHHHHHHHHHHHhhhhhhccCC-------CCcc-chHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCC
Q 011328          388 TVCLEGLENILKAGEAEKNMGN-------TGGV-NLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVE  454 (488)
Q Consensus       388 ~~al~~L~~l~~~~~~~~~~~~-------~~~~-~~~~~~l~~~g~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~  454 (488)
                      ..++.++..++...........       .++. ..+...+  ...++.+.+.+.++++.++..+...+..+...
T Consensus       392 ~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~  464 (1230)
T 1u6g_C          392 ADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQV--PNIVKALHKQMKEKSVKTRQCCFNMLTELVNV  464 (1230)
T ss_dssp             HHHHHHHHHHHHHHCCC------------CCCHHHHHHHHT--THHHHHHHHHTTCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHh--hHHHHHHHHHhccCCHHHHHHHHHHHHHHHHH
Confidence            9999999888764321000000       0000 0001111  12355566667888899998888888877654

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=99.61  E-value=4.9e-14  Score=150.45  Aligned_cols=408  Identities=14%  Similarity=0.150  Sum_probs=263.1

Q ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh-
Q 011328           31 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT-  109 (488)
Q Consensus        31 ~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~-  109 (488)
                      .++.+...+.++++.+|..|+.++..++.....+...... ..+++.++..+++++ +.+|..|++++++++...+... 
T Consensus       367 ~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-~~~l~~l~~~l~d~~-~~vr~~a~~~l~~~~~~~~~~~~  444 (876)
T 1qgr_A          367 VLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDPS-VVVRDTAAWTVGRICELLPEAAI  444 (876)
T ss_dssp             HHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHHHTCSS-HHHHHHHHHHHHHHHHHCGGGTS
T ss_pred             HHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHhCchhcc
Confidence            4555667777899999999999999987654212222222 458899999999988 9999999999999987433210 


Q ss_pred             -HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCc---------------hhHHHHHhcCChHHHHHHhccc--c
Q 011328          110 -RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSP---------------KCRDLVLSNGALMPLLAQFNEH--A  171 (488)
Q Consensus       110 -~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~---------------~~~~~~~~~~~l~~L~~ll~~~--~  171 (488)
                       ... -..+++.++..+.++ +.++..++++|.+++....               .....+  ...++.++..+...  .
T Consensus       445 ~~~~-l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~--~~il~~L~~~l~~~~~~  520 (876)
T 1qgr_A          445 NDVY-LAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSF--ELIVQKLLETTDRPDGH  520 (876)
T ss_dssp             STTT-HHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTH--HHHHHHHHHHTTSCSSC
T ss_pred             cHHH-HHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhH--HHHHHHHHHHHhCcCcc
Confidence             011 114577888888774 8999999999999974311               011111  12455666666432  1


Q ss_pred             cHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcc----------C-C----hhHHHHHHHHHHHhccCCc-hhH
Q 011328          172 KLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHS----------N-D----DEVLTDACWALSYLSDGTN-DKI  235 (488)
Q Consensus       172 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~----------~-~----~~v~~~al~~L~~l~~~~~-~~~  235 (488)
                      +..++..+..++..++...+..........++.++..+..          . +    +.++..++.++..++...+ ...
T Consensus       521 ~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~  600 (876)
T 1qgr_A          521 QNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDA  600 (876)
T ss_dssp             STTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhh
Confidence            4578888999999998876544445556777777766652          1 2    4567888999999987655 333


Q ss_pred             HHHHHhCCHHHHHHhcCCCC--cchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHh
Q 011328          236 QAVIEAGVCPRLVELLRHPS--PSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNIT  313 (488)
Q Consensus       236 ~~~~~~~~l~~L~~lL~~~~--~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~  313 (488)
                      .... ..+++.++.++.+..  +.++..++.+++.++..........++ .+++.+...+.+..++.+|..++++++.++
T Consensus       601 ~~~~-~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~  678 (876)
T 1qgr_A          601 LQIS-DVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYME-AFKPFLGIGLKNYAEYQVCLAAVGLVGDLC  678 (876)
T ss_dssp             HTTH-HHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHH-HHHHHHHHHHHHCTTHHHHHHHHHHHHHHH
T ss_pred             hHHH-HHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHH-HHHHHHHHHHcCcchHHHHHHHHHHHHHHH
Confidence            3222 257788888888764  478999999999998754333333333 367888888876546789999999999998


Q ss_pred             cCCHHHHHHHHHcCChHHHHHHHhc--CChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCC--------
Q 011328          314 AGNVNQIQAIIEAGIIGPLVNLLLN--AEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPD--------  383 (488)
Q Consensus       314 ~~~~~~~~~l~~~~~l~~L~~ll~~--~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~--------  383 (488)
                      ....+....... .+++.++..+.+  .+.+++..+++++++++.....+...++-  .+++.|.+.++.+.        
T Consensus       679 ~~~~~~~~~~~~-~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~l~--~~~~~l~~~~~~~~~~~d~~~~  755 (876)
T 1qgr_A          679 RALQSNIIPFCD-EVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYLE--VVLNTLQQASQAQVDKSDYDMV  755 (876)
T ss_dssp             HHHGGGGHHHHH-HHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGGGGGHH--HHHHHHHHHHTCCCCTTCHHHH
T ss_pred             HHHHHhhhhhHH-HHHHHHHHHhCCccccHHhhHHHHHHHHHHHHHhchhHHHHHH--HHHHHHHHHHhccCCCCChHHH
Confidence            732222333332 478888888887  36789999999999998633333323321  35666666665432        


Q ss_pred             ---HHHHHHHHHHHHHHHHhhhhhhc--cCCCCccchHHHHHHhhccHHHHHHhhcCC--CHHHHHHHHHHHHHhcCC
Q 011328          384 ---PRIVTVCLEGLENILKAGEAEKN--MGNTGGVNLFAQAIDDAEGLEKIENLQSHD--NTEIYEKAVKILETYWVE  454 (488)
Q Consensus       384 ---~~v~~~al~~L~~l~~~~~~~~~--~~~~~~~~~~~~~l~~~g~~~~L~~l~~~~--~~~v~~~a~~~l~~~~~~  454 (488)
                         ..++..++.++..++........  ..+.....+|...+     +..+..+..++  +..++..|..++..+...
T Consensus       756 ~~~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i-----~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~  828 (876)
T 1qgr_A          756 DYLNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFI-----LSFIDHIAGDEDHTDGVVACAAGLIGDLCTA  828 (876)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHH-----HHHHHHHHTCSCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHccCcccccchHHHHHHHHHHH-----HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence               26778888888888765321100  00000011122222     34455554555  789999999998877644

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=99.60  E-value=1.4e-13  Score=139.93  Aligned_cols=383  Identities=13%  Similarity=0.113  Sum_probs=257.8

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh
Q 011328           30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT  109 (488)
Q Consensus        30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~  109 (488)
                      ..++.+.++|.+.++.+|..|+.++.++.... ++..     .++++.+..+|.+.+ +.++..|+.+|..++..+++..
T Consensus       142 ~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~-p~~v-----~~~~~~l~~lL~D~d-~~V~~~Al~~L~~i~~~~~~~~  214 (618)
T 1w63_A          142 DLAGEVEKLLKTSNSYLRKKAALCAVHVIRKV-PELM-----EMFLPATKNLLNEKN-HGVLHTSVVLLTEMCERSPDML  214 (618)
T ss_dssp             HHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHC-GGGG-----GGGGGGTTTSTTCCC-HHHHHHHHHHHHHHCCSHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHC-hHHH-----HHHHHHHHHHhCCCC-HhHHHHHHHHHHHHHHhChHHH
Confidence            44788899999999999999999999998764 3322     267888899999988 9999999999999998655543


Q ss_pred             HHHHhCCCHHHHHHhhCC---------------CCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhc-----c
Q 011328          110 RVVIDHGAVPIFVRLLSS---------------PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN-----E  169 (488)
Q Consensus       110 ~~~~~~g~i~~L~~~L~~---------------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~-----~  169 (488)
                      ..+.  ..++.++..|.+               .++-.+...+.+|+.++..++...+     ...+.|..++.     +
T Consensus       215 ~~~~--~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~-----~~~~~L~~l~~~~~~~~  287 (618)
T 1w63_A          215 AHFR--KLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSE-----AMNDILAQVATNTETSK  287 (618)
T ss_dssp             HHHH--TTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHH-----TTHHHHHHHHHTSCCSS
T ss_pred             HHHH--HHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHH-----HHHHHHHHHHhcccccc
Confidence            3332  567777776642               4788889999999999877654322     23334444431     2


Q ss_pred             cccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHH
Q 011328          170 HAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVE  249 (488)
Q Consensus       170 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~  249 (488)
                      +.+..+...+++++..+...     ......+++.+..++.+.++.++..++.+|..++...+...    . .....++.
T Consensus       288 ~~~~aV~~ea~~~i~~l~~~-----~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~~----~-~~~~~i~~  357 (618)
T 1w63_A          288 NVGNAILYETVLTIMDIKSE-----SGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNAV----Q-RHRSTIVD  357 (618)
T ss_dssp             THHHHHHHHHHHHHHHSCCC-----HHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHHH----G-GGHHHHHH
T ss_pred             chHHHHHHHHHHHHHhcCCC-----HHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHHHH----H-HHHHHHHH
Confidence            34567888888888886432     12234678888889998899999999999999987654322    2 45678888


Q ss_pred             hcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCC---H-HHHHHHH-
Q 011328          250 LLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGN---V-NQIQAII-  324 (488)
Q Consensus       250 lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~---~-~~~~~l~-  324 (488)
                      ++.+++..+|..|+.++..++....  ...     +++.+...+.+. +.++|..++.+++.++...   . .....++ 
T Consensus       358 ~l~d~d~~Ir~~alelL~~l~~~~n--v~~-----iv~eL~~~l~~~-d~e~r~~~v~~I~~la~k~~~~~~~~v~~ll~  429 (618)
T 1w63_A          358 CLKDLDVSIKRRAMELSFALVNGNN--IRG-----MMKELLYFLDSC-EPEFKADCASGIFLAAEKYAPSKRWHIDTIMR  429 (618)
T ss_dssp             GGGSSCHHHHHHHHHHHHHHCCSSS--THH-----HHHHHHHHHHHC-CHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHH
T ss_pred             HccCCChhHHHHHHHHHHHHccccc--HHH-----HHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHhCccHHHHHHHHHH
Confidence            8998889999999999999986432  332     346677777777 7889999999998888631   1 1111111 


Q ss_pred             --H-c------------------------CChHHHHHHHhcC--ChhHHHHHHHHHHHhccCC-------------CHHH
Q 011328          325 --E-A------------------------GIIGPLVNLLLNA--EFEIKKEAAWAISNATSGG-------------SNEQ  362 (488)
Q Consensus       325 --~-~------------------------~~l~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~-------------~~~~  362 (488)
                        . .                        .++..|+..+.+.  ...+...++|+|+..+...             .+. 
T Consensus       430 lL~~~~~~v~~~~~~~l~~ii~~~p~l~~~~v~~L~~~l~~~~~~~~~~~~~~wilGEy~~~i~~~~~~~~~~~~~~~~-  508 (618)
T 1w63_A          430 VLTTAGSYVRDDAVPNLIQLITNSVEMHAYTVQRLYKAILGDYSQQPLVQVAAWCIGEYGDLLVSGQCEEEEPIQVTED-  508 (618)
T ss_dssp             HHHHTGGGSCSSHHHHHHHHHHHSCSTHHHHHHHHHHHHHHCCSCSHHHHHHHHHHHHHHHHHTTCCCSSSCCCCCCHH-
T ss_pred             HHHhccchhHHHHHHHHHHHHhcChhHHHHHHHHHHHHHhcccccHHHHHHHHHHHhhhHHHhcccccccccccCCCHH-
Confidence              1 0                        1344455555542  2344455777777665210             111 


Q ss_pred             HHHHHHCCChHHHHhhcC--CCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHH
Q 011328          363 IKFLVSQGCIKPLCDLLN--CPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEI  440 (488)
Q Consensus       363 ~~~l~~~~~i~~L~~ll~--~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~~~~~v  440 (488)
                             .+++.|..+++  ..++.++..++.++.++....+..            ...+.     ..|..+..+.+.+|
T Consensus       509 -------~~~~~l~~~l~~~~~~~~vr~~~lta~~Kl~~~~~~~------------~~~l~-----~~L~~~~~~~d~ev  564 (618)
T 1w63_A          509 -------EVLDILESVLISNMSTSVTRGYALTAIMKLSTRFTCT------------VNRIK-----KVVSIYGSSIDVEL  564 (618)
T ss_dssp             -------HHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHTTCSSC------------HHHHH-----HHHHHHTTCSCHHH
T ss_pred             -------HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhCcch------------HHHHH-----HHHHHhcCCCCHHH
Confidence                   13445555554  467889999999999887665421            22232     34666778899999


Q ss_pred             HHHHHHHHHHhcCCCC----CCCCCCCCCCCCC
Q 011328          441 YEKAVKILETYWVEED----EDEPLPPGDATQA  469 (488)
Q Consensus       441 ~~~a~~~l~~~~~~~~----~~~~~~~~~~~~~  469 (488)
                      |++|...+.-+....+    --+++|++.+.+.
T Consensus       565 rdRA~~y~~ll~~~~~~~~~vl~~~P~~~~~~~  597 (618)
T 1w63_A          565 QQRAVEYNALFKKYDHMRSALLERMPVMEKVTT  597 (618)
T ss_dssp             HHHHHHHHHHHHTTTTHHHHHHSCCCCCCC---
T ss_pred             HHHHHHHHHHHcCcHHHHHHHhhcCCCCCcccc
Confidence            9999988776544211    1134777665433

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=99.58  E-value=1.2e-14  Score=143.41  Aligned_cols=360  Identities=14%  Similarity=0.120  Sum_probs=242.7

Q ss_pred             cHHHHHHHhcCC--CHHHHHHHHHHHHHHhccCCCcc----------HHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHH
Q 011328           31 SLPAMVAGVWSD--DRNIQLDATTQFRKLLSIERSPP----------INEVIQSGVVPRFIEFLSRDDFPQLQFEAAWAL   98 (488)
Q Consensus        31 ~i~~l~~~L~s~--~~~~~~~a~~~L~~l~~~~~~~~----------~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L   98 (488)
                      .+..|+..+.++  ++.+|..|+..|.+++.......          ...-....+-..++..|.+++ +.+ ..++.++
T Consensus        36 ~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~-~~v-~~~~~~i  113 (462)
T 1ibr_B           36 FLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTET-YRP-SSASQCV  113 (462)
T ss_dssp             HHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCC-SSS-CSHHHHH
T ss_pred             HHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhhhhcCCHHHHHHHHHHHHHHhCCCC-chh-hHHHHHH
Confidence            344566666654  68999999999999876431000          000112234456777888877 678 8899999


Q ss_pred             HHhcCCC-chhhHHHHhCCCHHHHHHhhCCC--CHHHHHHHHHHHhhhhCCC-chhHHHHHhcCChHHHHHHhcccc-cH
Q 011328           99 TNIASGT-SENTRVVIDHGAVPIFVRLLSSP--TDDVREQAVWALGNVAGDS-PKCRDLVLSNGALMPLLAQFNEHA-KL  173 (488)
Q Consensus        99 ~~l~~~~-~~~~~~~~~~g~i~~L~~~L~~~--~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~l~~L~~ll~~~~-~~  173 (488)
                      +.++... ++.    .-.++++.|+..+.++  ++.++..++.+|..++... +....... ...++.++..+.+.. +.
T Consensus       114 ~~ia~~~~~~~----~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~-~~ll~~l~~~l~~~~~~~  188 (462)
T 1ibr_B          114 AGIACAEIPVN----QWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS-NEILTAIIQGMRKEEPSN  188 (462)
T ss_dssp             HHHHHHHGGGT----CCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH-HHHHHHHHHHHSTTCCCH
T ss_pred             HHHHHHhcccc----ccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHH-HHHHHHHHHHhCCCCCCH
Confidence            9998732 210    1136789999999887  8999999999999998643 21111111 125667777774332 78


Q ss_pred             hHHHHHHHHHHHhhcCCC--CCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhc
Q 011328          174 SMLRNATWTLSNFCRGKP--QPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL  251 (488)
Q Consensus       174 ~v~~~a~~~L~~l~~~~~--~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL  251 (488)
                      .++..+++++.++.....  .........+++.+...+.+++..++..++.++..++...+......+..++++.++..+
T Consensus       189 ~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~  268 (462)
T 1ibr_B          189 NVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAM  268 (462)
T ss_dssp             HHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999998764321  001111122466777777788999999999999999865544322222225667777778


Q ss_pred             CCCCcchHhHHHHHHhHhhcCCch-----------------hhHHHhh---CCChHHHHHHhccc------chhhHHHHH
Q 011328          252 RHPSPSVLIPALRTVGNIVTGDDM-----------------QTQCIIN---HQALPCLLDLLTQN------YKKSIKKEA  305 (488)
Q Consensus       252 ~~~~~~v~~~a~~~L~~l~~~~~~-----------------~~~~~~~---~~~~~~L~~lL~~~------~~~~v~~~a  305 (488)
                      .+.++.++..++..+..++.....                 ....+.+   ..+++.++..+...      .++.+|..|
T Consensus       269 ~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a  348 (462)
T 1ibr_B          269 KSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAA  348 (462)
T ss_dssp             HCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHH
T ss_pred             cCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHH
Confidence            888899999999999888763200                 0000111   23556666666432      145789999


Q ss_pred             HHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHH
Q 011328          306 CWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPR  385 (488)
Q Consensus       306 ~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~  385 (488)
                      +.++..++...++   .++ ..+++.+...+.++++.+|..|+.+++.++.+..++...... ..+++.+...++++++.
T Consensus       349 ~~~L~~l~~~~~~---~~~-~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l-~~~~~~l~~~l~d~~~~  423 (462)
T 1ibr_B          349 GVCLMLLATCCED---DIV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDPSVV  423 (462)
T ss_dssp             HHHHHHHHHHTTT---THH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTT-TTHHHHHHHGGGCSCHH
T ss_pred             HHHHHHHHHhccH---HHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHH-HHHHHHHHHHhcCCCHH
Confidence            9999999873222   122 236777888888889999999999999999765422111111 35788999999999999


Q ss_pred             HHHHHHHHHHHHHHhhh
Q 011328          386 IVTVCLEGLENILKAGE  402 (488)
Q Consensus       386 v~~~al~~L~~l~~~~~  402 (488)
                      ++..|+++|.++.....
T Consensus       424 Vr~~a~~~l~~~~~~~~  440 (462)
T 1ibr_B          424 VRDTAAWTVGRICELLP  440 (462)
T ss_dssp             HHHHHHHHHHHHHHHGG
T ss_pred             HHHHHHHHHHHHHHhcc
Confidence            99999999999987654

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=99.56  E-value=1.5e-13  Score=151.73  Aligned_cols=399  Identities=12%  Similarity=0.142  Sum_probs=264.2

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCcc----HHHHHHcCCHHHHHHhhcC-CCChhHHHHHHHHHHHhcCC
Q 011328           30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPP----INEVIQSGVVPRFIEFLSR-DDFPQLQFEAAWALTNIASG  104 (488)
Q Consensus        30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~----~~~~~~~~~i~~L~~lL~~-~~~~~v~~~a~~~L~~l~~~  104 (488)
                      ..++.++..+.++++.+|..|+.+|..++.......    ...-....++|.|++.+.+ ++ ..++..|+.++..++..
T Consensus        86 ~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~-~~~~~~al~~l~~~~~~  164 (1230)
T 1u6g_C           86 TIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQED-VSVQLEALDIMADMLSR  164 (1230)
T ss_dssp             HHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSC-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCc-hHHHHHHHHHHHHHHHH
Confidence            345667777777777888888888888775542210    0111234578999999984 66 89999999999999852


Q ss_pred             CchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHH
Q 011328          105 TSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLS  184 (488)
Q Consensus       105 ~~~~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~  184 (488)
                      .++..... -..+++.+...+.++++.+|..|+.+++.++...+.   .+ -...++.++..+....+..++..++.++.
T Consensus       165 ~~~~l~~~-~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~---~~-~~~~l~~l~~~L~~~~~~~~r~~a~~~l~  239 (1230)
T 1u6g_C          165 QGGLLVNF-HPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN---IV-FVDLIEHLLSELSKNDSMSTTRTYIQCIA  239 (1230)
T ss_dssp             TCSSCTTT-HHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHHTCSSCSCTTHHHHHH
T ss_pred             hHhHHHHH-HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCH---HH-HHHHHHHHHHHhccCCchhHHHHHHHHHH
Confidence            22111001 123567778888888999999999999999875442   11 12357778887754444567778888888


Q ss_pred             HhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCC-----------
Q 011328          185 NFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH-----------  253 (488)
Q Consensus       185 ~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-----------  253 (488)
                      .++...+..-......+++.+...+.+.++.++..++.++..++...+........ .+++.++..+..           
T Consensus       240 ~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l~-~li~~ll~~l~~d~~~~~~~d~~  318 (1230)
T 1u6g_C          240 AISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVS-TIINICLKYLTYDPNYNYDDEDE  318 (1230)
T ss_dssp             HHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHH-HHHHHHTTCCCCC----------
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhHH-HHHHHHHHHhCCCCCCCCccccc
Confidence            88875433222345789999999999889999999999999988654433222222 344555544431           


Q ss_pred             --------------------------CCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHH
Q 011328          254 --------------------------PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACW  307 (488)
Q Consensus       254 --------------------------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~  307 (488)
                                                ..+.+|..|+.++..++...+......+ ..+++.++..+.+. +..+|..++.
T Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~-~~l~~~l~~~l~d~-~~~Vr~~a~~  396 (1230)
T 1u6g_C          319 DENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFY-KTVSPALISRFKER-EENVKADVFH  396 (1230)
T ss_dssp             --------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHH-TTTHHHHHSTTSCS-SSHHHHHHHH
T ss_pred             ccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHH-HHHHHHHHHHcCCC-chHHHHHHHH
Confidence                                      1235688899999998875443333333 35778888888777 8899999999


Q ss_pred             HHHHHhcC--C-----------------HHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHH
Q 011328          308 TISNITAG--N-----------------VNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVS  368 (488)
Q Consensus       308 ~L~nl~~~--~-----------------~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~  368 (488)
                      ++..+...  .                 .......+ ..+++.+...+.++++.+|..++.+|+.++.........++  
T Consensus       397 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l--  473 (1230)
T 1u6g_C          397 AYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQV-PNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHI--  473 (1230)
T ss_dssp             HHHHHHHHHCCC------------CCCHHHHHHHHT-THHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGH--
T ss_pred             HHHHHHHHhccccccccCccccccccchHHHHHHHh-hHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHHHH--
Confidence            88877641  1                 11112222 23667777778888999999999999998864321111121  


Q ss_pred             CCChHHHHhhcCCCCH--HHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHH
Q 011328          369 QGCIKPLCDLLNCPDP--RIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVK  446 (488)
Q Consensus       369 ~~~i~~L~~ll~~~~~--~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~~~~~v~~~a~~  446 (488)
                      ..+++.+...++++.+  .++..++..+..++.......          +...+.  ..++.|.....+++..++..|..
T Consensus       474 ~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~----------~~~~l~--~llp~L~~~l~d~~~~v~~~al~  541 (1230)
T 1u6g_C          474 PVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQV----------FHPHVQ--ALVPPVVACVGDPFYKITSEALL  541 (1230)
T ss_dssp             HHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGG----------GHHHHT--TTHHHHHHHHTCSSHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHH----------HHhHHH--HHHHHHHHHHcccchHHHHHHHH
Confidence            1357888888887654  888888888888875322110          233332  34667777777788888777777


Q ss_pred             HHHHhc
Q 011328          447 ILETYW  452 (488)
Q Consensus       447 ~l~~~~  452 (488)
                      .+..+.
T Consensus       542 ~l~~l~  547 (1230)
T 1u6g_C          542 VTQQLV  547 (1230)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            776655

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.45  E-value=4.9e-12  Score=110.44  Aligned_cols=188  Identities=20%  Similarity=0.200  Sum_probs=157.7

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh
Q 011328           30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT  109 (488)
Q Consensus        30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~  109 (488)
                      +.++.|++.|.++++.++..|+..|..+..            .+.++.|+++|.+++ +.+|..|+++|+.+..      
T Consensus        19 ~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~------------~~~~~~L~~~l~~~~-~~vr~~a~~aL~~~~~------   79 (211)
T 3ltm_A           19 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD------------ERAVEPLIKALKDED-AWVRRAAADALGQIGD------   79 (211)
T ss_dssp             GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC------------GGGHHHHHHHTTCSC-HHHHHHHHHHHHHHCC------
T ss_pred             hHHHHHHHHHcCCCHHHHHHHHHHHHHhCC------------ccHHHHHHHHHcCCC-HHHHHHHHHHHHhhCC------
Confidence            778999999999999999999999998632            257899999999988 9999999999999864      


Q ss_pred             HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcC
Q 011328          110 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG  189 (488)
Q Consensus       110 ~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~  189 (488)
                           .+.++.|+..+.++++.+|..++++|+.+..           ...++.|+..+ .++++.++..++++|..+.. 
T Consensus        80 -----~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~-  141 (211)
T 3ltm_A           80 -----ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKAL-KDEDWFVRIAAAFALGEIGD-  141 (211)
T ss_dssp             -----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC-
T ss_pred             -----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHH-hCCCHHHHHHHHHHHHHcCC-
Confidence                 2468999999999999999999999999853           13577888888 78899999999999999853 


Q ss_pred             CCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHh
Q 011328          190 KPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNI  269 (488)
Q Consensus       190 ~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l  269 (488)
                               ...++.+..++.++++.++..++.+|+.+..           ...++.|..++.++++.+|..|..+|..+
T Consensus       142 ---------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~  201 (211)
T 3ltm_A          142 ---------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLETH  201 (211)
T ss_dssp             ---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHCCHHHHHHHHHHHHC-
T ss_pred             ---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence                     3578999999999999999999999999843           14567788888889999999999999998


Q ss_pred             hcCCc
Q 011328          270 VTGDD  274 (488)
Q Consensus       270 ~~~~~  274 (488)
                      .....
T Consensus       202 ~~~~~  206 (211)
T 3ltm_A          202 KSFNH  206 (211)
T ss_dssp             -----
T ss_pred             CCCCC
Confidence            76443

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=99.44  E-value=4.7e-12  Score=109.61  Aligned_cols=184  Identities=20%  Similarity=0.204  Sum_probs=157.3

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh
Q 011328           30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT  109 (488)
Q Consensus        30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~  109 (488)
                      +..+.+++.|.++++.++..|+..|..+..            .+.++.|+++|.+++ +.+|..|+++|+.+..      
T Consensus        14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~------------~~~~~~L~~~l~~~~-~~vr~~a~~~L~~~~~------   74 (201)
T 3ltj_A           14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD------------ERAVEPLIKALKDED-AWVRRAAADALGQIGD------   74 (201)
T ss_dssp             HHHHHHHHHTTCSCHHHHHHHHHHHHHHCC------------GGGHHHHHHHTTCSS-HHHHHHHHHHHHHHCC------
T ss_pred             cchHHHHHHhcCCCHHHHHHHHHHHHhcCC------------hhHHHHHHHHHcCCC-HHHHHHHHHHHHhhCC------
Confidence            667899999999999999999999998542            246889999999888 9999999999999864      


Q ss_pred             HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcC
Q 011328          110 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG  189 (488)
Q Consensus       110 ~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~  189 (488)
                           ...++.|+..+.++++.+|..++++|+.+..  +         ..++.++..+ .+.++.++..++++|..+.. 
T Consensus        75 -----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--~---------~~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~-  136 (201)
T 3ltj_A           75 -----ERAVEPLIKALKDEDGWVRQSAAVALGQIGD--E---------RAVEPLIKAL-KDEDWFVRIAAAFALGEIGD-  136 (201)
T ss_dssp             -----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--G---------GGHHHHHHHT-TCSSHHHHHHHHHHHHHHTC-
T ss_pred             -----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--H---------HHHHHHHHHH-cCCCHHHHHHHHHHHHHhCC-
Confidence                 2468999999999999999999999999843  1         2577888888 77899999999999999853 


Q ss_pred             CCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHh
Q 011328          190 KPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNI  269 (488)
Q Consensus       190 ~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l  269 (488)
                               ...++.+..++.++++.++..++.+|+.+..           ...++.|..++.++++.+|..|..+|..+
T Consensus       137 ---------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l  196 (201)
T 3ltj_A          137 ---------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLETH  196 (201)
T ss_dssp             ---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHCCHHHHHHHHHHHHHC
T ss_pred             ---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence                     3688999999999999999999999999832           13567788888888999999999999886


Q ss_pred             h
Q 011328          270 V  270 (488)
Q Consensus       270 ~  270 (488)
                      .
T Consensus       197 ~  197 (201)
T 3ltj_A          197 K  197 (201)
T ss_dssp             C
T ss_pred             H
Confidence            4

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=99.43  E-value=1.5e-11  Score=106.46  Aligned_cols=184  Identities=20%  Similarity=0.238  Sum_probs=157.4

Q ss_pred             CCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCCh
Q 011328          116 GAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLF  195 (488)
Q Consensus       116 g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~  195 (488)
                      +..+.+++.|+++++.+|..|++.|+.+..           ...++.++..+ .+.++.++..++++|..+..       
T Consensus        14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l-~~~~~~vr~~a~~~L~~~~~-------   74 (201)
T 3ltj_A           14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKAL-KDEDAWVRRAAADALGQIGD-------   74 (201)
T ss_dssp             HHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC-------
T ss_pred             cchHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHH-cCCCHHHHHHHHHHHHhhCC-------
Confidence            457899999999999999999999998753           13578889999 77899999999999998753       


Q ss_pred             hhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCch
Q 011328          196 EQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDM  275 (488)
Q Consensus       196 ~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~  275 (488)
                         ...++.+..++.++++.++..++++|+.+..           .+.++.|..++.++++.+|..|+++|+.+..    
T Consensus        75 ---~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----  136 (201)
T 3ltj_A           75 ---ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD----  136 (201)
T ss_dssp             ---GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC----
T ss_pred             ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----
Confidence               2678999999999999999999999998753           1467888999999999999999999999853    


Q ss_pred             hhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhc
Q 011328          276 QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNAT  355 (488)
Q Consensus       276 ~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~  355 (488)
                             ...++.|..++.++ ++.+|..|+++|+.+.  .++         .++.|..++.++++.||..|..+|.++-
T Consensus       137 -------~~~~~~L~~~l~d~-~~~vr~~A~~aL~~~~--~~~---------~~~~L~~~l~d~~~~vr~~A~~aL~~l~  197 (201)
T 3ltj_A          137 -------ERAVEPLIKALKDE-DGWVRQSAADALGEIG--GER---------VRAAMEKLAETGTGFARKVAVNYLETHK  197 (201)
T ss_dssp             -------GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHC--SHH---------HHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred             -------HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhC--chh---------HHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence                   24678899999988 9999999999999993  233         5777888899999999999999999875

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.43  E-value=8.7e-12  Score=108.81  Aligned_cols=187  Identities=21%  Similarity=0.216  Sum_probs=157.8

Q ss_pred             cCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhH
Q 011328           72 SGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCR  151 (488)
Q Consensus        72 ~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~  151 (488)
                      .+.++.|+++|++++ +.+|..|+..|+.+..           .+.++.|+.++.++++.+|..++++|+.+..      
T Consensus        18 ~~~~~~L~~~L~~~~-~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~------   79 (211)
T 3ltm_A           18 PEKVEMYIKNLQDDS-YYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------   79 (211)
T ss_dssp             GGGHHHHHHHTTCSS-HHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC------
T ss_pred             HhHHHHHHHHHcCCC-HHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC------
Confidence            467899999999988 9999999999998864           2568999999999999999999999999852      


Q ss_pred             HHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCC
Q 011328          152 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGT  231 (488)
Q Consensus       152 ~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~  231 (488)
                           .+.++.++..+ .+.++.++..++++|..+..          ...++.+..++.++++.++..++.+|+.+..  
T Consensus        80 -----~~~~~~L~~~l-~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--  141 (211)
T 3ltm_A           80 -----ERAVEPLIKAL-KDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--  141 (211)
T ss_dssp             -----GGGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--
T ss_pred             -----HHHHHHHHHHH-cCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--
Confidence                 13577888888 77889999999999998854          3578999999999999999999999999843  


Q ss_pred             chhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHH
Q 011328          232 NDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISN  311 (488)
Q Consensus       232 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~n  311 (488)
                               ...++.|..++.++++.++..++.+|+.+..           ...++.|..+++++ ++.+|..|..+|.+
T Consensus       142 ---------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~-~~~vr~~A~~aL~~  200 (211)
T 3ltm_A          142 ---------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETG-TGFARKVAVNYLET  200 (211)
T ss_dssp             ---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHC-CHHHHHHHHHHHHC
T ss_pred             ---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCC-CHHHHHHHHHHHHh
Confidence                     1467889999999999999999999999853           13567788899888 89999999999999


Q ss_pred             HhcC
Q 011328          312 ITAG  315 (488)
Q Consensus       312 l~~~  315 (488)
                      +...
T Consensus       201 ~~~~  204 (211)
T 3ltm_A          201 HKSF  204 (211)
T ss_dssp             ----
T ss_pred             cCCC
Confidence            8764

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=99.39  E-value=2.7e-11  Score=122.73  Aligned_cols=367  Identities=11%  Similarity=0.094  Sum_probs=243.7

Q ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhh--cCCCChhHHHHHHHHHHHhcCCCchh
Q 011328           31 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFL--SRDDFPQLQFEAAWALTNIASGTSEN  108 (488)
Q Consensus        31 ~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL--~~~~~~~v~~~a~~~L~~l~~~~~~~  108 (488)
                      .++.+.+.|+++++.++-.|++++.++..   .+    +. ..+++.+.+++  .+.+ +.+|..|+.++.++...+|+.
T Consensus       112 ~iN~l~kDl~~~n~~ir~lALr~L~~i~~---~e----~~-~~l~~~v~~~l~~~d~~-~~VRK~A~~al~kl~~~~p~~  182 (621)
T 2vgl_A          112 INNAIKNDLASRNPTFMGLALHCIANVGS---RE----MA-EAFAGEIPKILVAGDTM-DSVKQSAALCLLRLYRTSPDL  182 (621)
T ss_dssp             HHHHHHHHHHSCCHHHHHHHHHHHHHHCC---HH----HH-HHHTTHHHHHHHCSSSC-HHHHHHHHHHHHHHHHHCGGG
T ss_pred             HHHHHHHhcCCCCHHHHHHHHHHhhccCC---HH----HH-HHHHHHHHHHHhCCCCC-HHHHHHHHHHHHHHHHhChhh
Confidence            46678888899999999999999999743   12    22 24678888999  7788 999999999999999855543


Q ss_pred             hHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhc----c--c----------cc
Q 011328          109 TRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN----E--H----------AK  172 (488)
Q Consensus       109 ~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~----~--~----------~~  172 (488)
                      ..   ..+.++.+.++|.+.++.++..|+.++..++..++..   +  ...++.++..|.    .  .          .+
T Consensus       183 ~~---~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~---~--~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~  254 (621)
T 2vgl_A          183 VP---MGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEE---F--KTSVSLAVSRLSRIVTSASTDLQDYTYYFVPA  254 (621)
T ss_dssp             CC---CCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHH---H--TTHHHHHHHHHHHHHHCCSSSCSTTEETTEES
T ss_pred             cC---chhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHH---H--HHHHHHHHHHHHHHHhCCCCCccchhhcCCCC
Confidence            32   2478999999999999999999999999998765431   1  123344443331    1  1          15


Q ss_pred             HhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhh---------ccCC--hhHHHHHHHHHHHhccCCchhHHHHHHh
Q 011328          173 LSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLI---------HSND--DEVLTDACWALSYLSDGTNDKIQAVIEA  241 (488)
Q Consensus       173 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll---------~~~~--~~v~~~al~~L~~l~~~~~~~~~~~~~~  241 (488)
                      +-.+...+..+..++...+..........+..++..+         ++.+  ..|...+..++..+.. .++    +.. 
T Consensus       255 ~w~qi~il~ll~~~~~~~d~~~~~~l~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~-~~~----~~~-  328 (621)
T 2vgl_A          255 PWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDS-EPN----LLV-  328 (621)
T ss_dssp             HHHHHHHHHHGGGSSSCSSHHHHHHHHHHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCC-CHH----HHH-
T ss_pred             chHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCC-cHH----HHH-
Confidence            6677777777777764321111111222333333322         1122  3788888888888853 222    222 


Q ss_pred             CCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhc-ccchhhHHHHHHHHHHHHhcCCHHHH
Q 011328          242 GVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLT-QNYKKSIKKEACWTISNITAGNVNQI  320 (488)
Q Consensus       242 ~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~-~~~~~~v~~~a~~~L~nl~~~~~~~~  320 (488)
                      .++..|..++.++++.+|..++..|..++...+. . ..+. .....++..+. ++ +..+|..++.++..++.  +.+.
T Consensus       329 ~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~-~-~~~~-~~~~~i~~~L~~d~-d~~Ir~~aL~lL~~l~~--~~Nv  402 (621)
T 2vgl_A          329 RACNQLGQFLQHRETNLRYLALESMCTLASSEFS-H-EAVK-THIETVINALKTER-DVSVRQRAVDLLYAMCD--RSNA  402 (621)
T ss_dssp             HHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTT-H-HHHH-TTHHHHHHHHTTCC-CHHHHHHHHHHHHHHCC--HHHH
T ss_pred             HHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCc-H-HHHH-HHHHHHHHHhccCC-CHhHHHHHHHHHHHHcC--hhhH
Confidence            4567788889888999999999999999876542 1 1222 45677888888 77 89999999999999974  4444


Q ss_pred             HHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHh
Q 011328          321 QAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKA  400 (488)
Q Consensus       321 ~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~  400 (488)
                      ..     ++..|...+...+.+++..++.+++.++..-.+...      -+++.|.+++......+...+...+..++..
T Consensus       403 ~~-----Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k~~~~~~------~~v~~Ll~ll~~~~~~v~~ev~~~l~~ii~~  471 (621)
T 2vgl_A          403 QQ-----IVAEMLSYLETADYSIREEIVLKVAILAEKYAVDYT------WYVDTILNLIRIAGDYVSEEVWYRVIQIVIN  471 (621)
T ss_dssp             HH-----HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCSSTH------HHHHHHHHHHHHHGGGSCSHHHHHHHHHHGG
T ss_pred             HH-----HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHH------HHHHHHHHHHHhhcccchHHHHHHHHHHHhC
Confidence            43     455688888888999999999999998743211111      1366777777755544555556666666654


Q ss_pred             hhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCC--CHHHHHHHHHHHHHhcCC
Q 011328          401 GEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHD--NTEIYEKAVKILETYWVE  454 (488)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~~--~~~v~~~a~~~l~~~~~~  454 (488)
                      .+..            +...     +..+.+...++  ...+...+.|++..|-+.
T Consensus       472 ~~~~------------~~~~-----~~~l~~~l~~~~~~~~li~~~~wilGEy~~~  510 (621)
T 2vgl_A          472 RDDV------------QGYA-----AKTVFEALQAPACHENLVKVGGYILGEFGNL  510 (621)
T ss_dssp             GCSC------------HHHH-----HHHHHHHHTSSSCCHHHHHHHHHHHHHHTHH
T ss_pred             ChhH------------HHHH-----HHHHHHHHcCccchHHHHHHHHHHhcchHHH
Confidence            4322            1111     22233333332  345667888999988654

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=99.34  E-value=6.9e-10  Score=112.45  Aligned_cols=332  Identities=13%  Similarity=0.109  Sum_probs=233.6

Q ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhH
Q 011328           31 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR  110 (488)
Q Consensus        31 ~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~  110 (488)
                      +.+.+++++.+++...+..+--++..++... ++..   .  =++..+.+-|++++ +.++..|+++++++..  ++...
T Consensus        75 ~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~-~e~~---~--L~iN~l~kDl~~~n-~~ir~lALr~L~~i~~--~e~~~  145 (621)
T 2vgl_A           75 GHMEAVNLLSSNRYTEKQIGYLFISVLVNSN-SELI---R--LINNAIKNDLASRN-PTFMGLALHCIANVGS--REMAE  145 (621)
T ss_dssp             CHHHHHHGGGCSCHHHHHHHHHHHHHSCCCC-HHHH---H--HHHHHHHHHHHSCC-HHHHHHHHHHHHHHCC--HHHHH
T ss_pred             hHHHHHHHhcCCCHHHHHHHHHHHHHHccCC-cHHH---H--HHHHHHHHhcCCCC-HHHHHHHHHHhhccCC--HHHHH
Confidence            4556888999999999988888888866543 2211   1  14567777888888 9999999999999964  55444


Q ss_pred             HHHhCCCHHHHHHhh--CCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhc
Q 011328          111 VVIDHGAVPIFVRLL--SSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR  188 (488)
Q Consensus       111 ~~~~~g~i~~L~~~L--~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~  188 (488)
                           .+++.+.+.+  .+.++.+|..|+.++..+....|+.   +...+.++.+.++| .+.++.++..|+.++..++.
T Consensus       146 -----~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~---~~~~~~~~~l~~lL-~d~d~~V~~~a~~~l~~i~~  216 (621)
T 2vgl_A          146 -----AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDL---VPMGDWTSRVVHLL-NDQHLGVVTAATSLITTLAQ  216 (621)
T ss_dssp             -----HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGG---CCCCSCHHHHHHHT-TCSCHHHHHHHHHHHHHHHH
T ss_pred             -----HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhh---cCchhHHHHHHHHh-CCCCccHHHHHHHHHHHHHH
Confidence                 3468888999  8899999999999999998765542   22236788888888 78899999999999999987


Q ss_pred             CCCCCChhhhhchHHHHHHhhccC-------------ChhHHHHHHHHHHHhccCC-chhHHHHHHhCCHHHHHHhcC--
Q 011328          189 GKPQPLFEQTRPALPALERLIHSN-------------DDEVLTDACWALSYLSDGT-NDKIQAVIEAGVCPRLVELLR--  252 (488)
Q Consensus       189 ~~~~~~~~~~~~~~~~l~~ll~~~-------------~~~v~~~al~~L~~l~~~~-~~~~~~~~~~~~l~~L~~lL~--  252 (488)
                      ..+..-.......+..+.+++..+             ++..+...+..+..++... ++....+.  +.+..++..+.  
T Consensus       217 ~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~--~~L~~il~~~~~~  294 (621)
T 2vgl_A          217 KNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLT--ECLETILNKAQEP  294 (621)
T ss_dssp             HCHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHH--HHHHHHHHHHHSC
T ss_pred             hChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHH--HHHHHHHHhhccC
Confidence            653211111223333444444322             5788999999999988643 23323222  23344443321  


Q ss_pred             -------CCC--cchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHH
Q 011328          253 -------HPS--PSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAI  323 (488)
Q Consensus       253 -------~~~--~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l  323 (488)
                             +.+  ..+...+..++..+.. .+....     .++..|..++.++ ++.+|..++..+..++...+. . ..
T Consensus       295 ~ks~~l~~~n~~~aVl~ea~~~i~~l~~-~~~~~~-----~~~~~L~~~L~~~-~~niry~aL~~l~~l~~~~~~-~-~~  365 (621)
T 2vgl_A          295 PKSKKVQHSNAKNAVLFEAISLIIHHDS-EPNLLV-----RACNQLGQFLQHR-ETNLRYLALESMCTLASSEFS-H-EA  365 (621)
T ss_dssp             CSCSSHHHHHHHHHHHHHHHHHHHHHCC-CHHHHH-----HHHHHHHHHSSCS-CHHHHHHHHHHHHHHTTCTTT-H-HH
T ss_pred             cccccccccchHHHHHHHHHHHHHhcCC-cHHHHH-----HHHHHHHHHhcCC-CcchHHHHHHHHHHHHhccCc-H-HH
Confidence                   112  2677778888887753 222222     3566788888877 889999999999999885432 1 12


Q ss_pred             HHcCChHHHHHHHh-cCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHh
Q 011328          324 IEAGIIGPLVNLLL-NAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKA  400 (488)
Q Consensus       324 ~~~~~l~~L~~ll~-~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~  400 (488)
                      + ....+.++.++. ++|..++..++..|..++.   ......     ++..|...+...+.+++..++.++..+...
T Consensus       366 ~-~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~---~~Nv~~-----Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k  434 (621)
T 2vgl_A          366 V-KTHIETVINALKTERDVSVRQRAVDLLYAMCD---RSNAQQ-----IVAEMLSYLETADYSIREEIVLKVAILAEK  434 (621)
T ss_dssp             H-HTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCC---HHHHHH-----HHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred             H-HHHHHHHHHHhccCCCHhHHHHHHHHHHHHcC---hhhHHH-----HHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence            2 246778888898 8899999999999999974   344444     466777777778899999999888888654

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=99.13  E-value=1.3e-08  Score=81.60  Aligned_cols=218  Identities=13%  Similarity=0.168  Sum_probs=175.5

Q ss_pred             hCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCC
Q 011328          114 DHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQP  193 (488)
Q Consensus       114 ~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~  193 (488)
                      +..++..++.+|.++-..++.+|+..+.+++...++..+.+     +..|+.++.+++..........+++.++.-.   
T Consensus        30 d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl-----~~kL~vm~~ksEaIpltqeIa~a~G~la~i~---  101 (253)
T 2db0_A           30 DESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKKSEAIPLTQEIAKAFGQMAKEK---  101 (253)
T ss_dssp             CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHH-----HHHHHHHHHHCCSHHHHHHHHHHHHHHHHHC---
T ss_pred             hHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhhcccCchHHHHHHHHhHHHHhC---
Confidence            44678999999999999999999999999998887754443     4577778777888888788888899888654   


Q ss_pred             ChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCC
Q 011328          194 LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGD  273 (488)
Q Consensus       194 ~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~  273 (488)
                       .....+.+|.+..-.+-++++++.....+|..+...++....     +++.-+..++.+++..-+..|+..++.+....
T Consensus       102 -Pe~v~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~-----~v~rdi~smltskd~~Dkl~aLnFi~alGen~  175 (253)
T 2db0_A          102 -PELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMA-----SIVRDFMSMLSSKNREDKLTALNFIEAMGENS  175 (253)
T ss_dssp             -HHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHH-----HHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTT
T ss_pred             -HHHHHhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHH-----HHHHHHHHHhcCCChHHHHHHHHHHHHHhccC
Confidence             345678888888888889999999999999999988876555     55677888999988888888999988887654


Q ss_pred             chhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHH
Q 011328          274 DMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISN  353 (488)
Q Consensus       274 ~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~  353 (488)
                      ....     .-.+|.|..+|.+. +.-||..|+-+|.+++..++..+..+.      .-+.-+.+.+..++...-.+|+.
T Consensus       176 ~~yv-----~PfLprL~aLL~D~-deiVRaSaVEtL~~lA~~npklRkii~------~kl~e~~D~S~lv~~~V~egL~r  243 (253)
T 2db0_A          176 FKYV-----NPFLPRIINLLHDG-DEIVRASAVEALVHLATLNDKLRKVVI------KRLEELNDTSSLVNKTVKEGISR  243 (253)
T ss_dssp             HHHH-----GGGHHHHHGGGGCS-SHHHHHHHHHHHHHHHTSCHHHHHHHH------HHHHHCCCSCHHHHHHHHHHHHH
T ss_pred             cccc-----CcchHHHHHHHcCc-chhhhHHHHHHHHHHHHcCHHHHHHHH------HHHHHhcCcHHHHHHHHHHHHHH
Confidence            4332     24789999999999 999999999999999998888554333      24455677788899999999988


Q ss_pred             hccC
Q 011328          354 ATSG  357 (488)
Q Consensus       354 l~~~  357 (488)
                      ++.-
T Consensus       244 l~l~  247 (253)
T 2db0_A          244 LLLL  247 (253)
T ss_dssp             HHHC
T ss_pred             HHHH
Confidence            8753

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=99.12  E-value=9e-09  Score=95.10  Aligned_cols=279  Identities=14%  Similarity=0.071  Sum_probs=166.6

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh
Q 011328           30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT  109 (488)
Q Consensus        30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~  109 (488)
                      ...+.++++++++|..++...--.+..++... .+..      =++..+.+=+++++ +-+|..|+++++++..  ++..
T Consensus        68 ~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~-~e~i------Lv~Nsl~kDl~~~N-~~iR~lALRtL~~I~~--~~m~  137 (355)
T 3tjz_B           68 EAFFAMTKLFQSNDPTLRRMCYLTIKEMSCIA-EDVI------IVTSSLTKDMTGKE-DSYRGPAVRALCQITD--STML  137 (355)
T ss_dssp             HHHHHHHGGGGCCCHHHHHHHHHHHHHHTTTS-SCGG------GGHHHHHHHHHSSC-HHHHHHHHHHHHHHCC--TTTH
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCH-HHHH------HHHHHHHhhcCCCc-HhHHHHHHHHHhcCCC--HHHH
Confidence            44566888999999999998888888866542 3322      25678888889999 9999999999999986  3443


Q ss_pred             HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcC
Q 011328          110 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG  189 (488)
Q Consensus       110 ~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~  189 (488)
                      +.     +.+.+.+.+.+.++.+|..|+.+...+....|+..    + +.+..+-+++ .+.++.++.+|+.+|..+...
T Consensus       138 ~~-----l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v----~-~~~~~l~~ll-~d~n~~V~~~Al~lL~ei~~~  206 (355)
T 3tjz_B          138 QA-----IERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVV----K-RWVNEAQEAA-SSDNIMVQYHALGLLYHVRKN  206 (355)
T ss_dssp             HH-----HHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHH----H-TTHHHHHHHT-TCSSHHHHHHHHHHHHHHHTT
T ss_pred             HH-----HHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHH----H-HHHHHHHHHh-cCCCccHHHHHHHHHHHHHhh
Confidence            33     35778888999999999999999999998877532    2 5788888888 778889999999999999875


Q ss_pred             CCCCChhhhhchHHHHHHhhccC---ChhHHHHHHHHHHHhccCC-chhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHH
Q 011328          190 KPQPLFEQTRPALPALERLIHSN---DDEVLTDACWALSYLSDGT-NDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT  265 (488)
Q Consensus       190 ~~~~~~~~~~~~~~~l~~ll~~~---~~~v~~~al~~L~~l~~~~-~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~  265 (488)
                      +        ...+..++..+...   ++-.+...++.+..+...+ +..     ...+++.+..+|++.++.|...|+++
T Consensus       207 d--------~~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~~-----~~~~~~~l~~~L~~~~~aVvyEa~k~  273 (355)
T 3tjz_B          207 D--------RLAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGSR-----DSPLFDFIESCLRNKHEMVVYEAASA  273 (355)
T ss_dssp             C--------HHHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC----------------------CCCCCSSHHHHHHHHHH
T ss_pred             c--------hHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchhh-----HHHHHHHHHHHHcCCChHHHHHHHHH
Confidence            3        22445555555442   4666666666666666544 222     23677888899999999999999999


Q ss_pred             HhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHH
Q 011328          266 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKK  345 (488)
Q Consensus       266 L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~  345 (488)
                      +..+.......    . ..++..+..++.++ ++.+|..|+..|..++...|+..+.     .-..+.+++.+++..+..
T Consensus       274 I~~l~~~~~~~----~-~~a~~~L~~fLss~-d~niryvaLr~L~~l~~~~P~~v~~-----~n~~ie~li~d~n~sI~t  342 (355)
T 3tjz_B          274 IVNLPGCSAKE----L-APAVSVLQLFCSSP-KAALRYAAVRTLNKVAMKHPSAVTA-----CNLDLENLVTDANRSIAT  342 (355)
T ss_dssp             HTC----------------CCCTHHHHHHSS-SSSSHHHHHHCC------------------------------------
T ss_pred             HHhccCCCHHH----H-HHHHHHHHHHHcCC-CchHHHHHHHHHHHHHHHCcHHHHH-----HHHHHHHHccCCcHhHHH
Confidence            99886522221    1 24466777788888 8899999999999998876665432     334466778888877766


Q ss_pred             HHHHHHHH
Q 011328          346 EAAWAISN  353 (488)
Q Consensus       346 ~a~~aL~~  353 (488)
                      .|+.+|..
T Consensus       343 ~Aittllk  350 (355)
T 3tjz_B          343 LAITTLLK  350 (355)
T ss_dssp             --------
T ss_pred             HHHHHhhh
Confidence            66665544

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=99.11  E-value=9.8e-09  Score=105.34  Aligned_cols=275  Identities=15%  Similarity=0.144  Sum_probs=195.6

Q ss_pred             ccHHHHHHHhc---CCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCC-------ChhHHHHHHHHHH
Q 011328           30 ESLPAMVAGVW---SDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDD-------FPQLQFEAAWALT   99 (488)
Q Consensus        30 ~~i~~l~~~L~---s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~-------~~~v~~~a~~~L~   99 (488)
                      +++..|-+.|.   ++++.++.-|+..|.-+-++..    +     .++..|...|.+++       .+.++..|+..|+
T Consensus       392 ~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~----~-----~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG  462 (963)
T 4ady_A          392 EGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFG----R-----DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG  462 (963)
T ss_dssp             THHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTT----H-----HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCc----H-----HHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence            34566777776   6788999999999999776542    1     14566777776543       3678999999999


Q ss_pred             HhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHH
Q 011328          100 NIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNA  179 (488)
Q Consensus       100 ~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a  179 (488)
                      -+..++..  .     .+++.|...+.+++..++..|+.+|+.+..++... +      ++..|+..+..+.+..+++.+
T Consensus       463 la~~GS~~--e-----ev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~-~------ai~~LL~~~~e~~~e~vrR~a  528 (963)
T 4ady_A          463 LAAMGSAN--I-----EVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKP-E------AIHDMFTYSQETQHGNITRGL  528 (963)
T ss_dssp             HHSTTCCC--H-----HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCH-H------HHHHHHHHHHHCSCHHHHHHH
T ss_pred             HHhcCCCC--H-----HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCH-H------HHHHHHHHHhccCcHHHHHHH
Confidence            98764421  1     24677888888877888889999999875443321 1      345666666556678899999


Q ss_pred             HHHHHHhhcCCCCCChhhhhchHHHHHHhhc-cCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHh-cCCCCcc
Q 011328          180 TWTLSNFCRGKPQPLFEQTRPALPALERLIH-SNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVEL-LRHPSPS  257 (488)
Q Consensus       180 ~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~-~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~l-L~~~~~~  257 (488)
                      +.+|..+..+.        ...++.+++.|. +.++.++..++.+++.-.....+.       ..++.|+.. ..+.++.
T Consensus       529 algLGll~~g~--------~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~-------~aIq~LL~~~~~d~~d~  593 (963)
T 4ady_A          529 AVGLALINYGR--------QELADDLITKMLASDESLLRYGGAFTIALAYAGTGNN-------SAVKRLLHVAVSDSNDD  593 (963)
T ss_dssp             HHHHHHHTTTC--------GGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCH-------HHHHHHHHHHHHCSCHH
T ss_pred             HHHHHhhhCCC--------hHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCH-------HHHHHHHHHhccCCcHH
Confidence            99999887654        345667777776 468888888888877544433322       223434433 3456778


Q ss_pred             hHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh
Q 011328          258 VLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLL  337 (488)
Q Consensus       258 v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~  337 (488)
                      +|..|+..|+.+..+++         ..++.++.+|.+..++.+|..+.++++.++.+++..       .++..|..+.+
T Consensus       594 VRraAViaLGlI~~g~~---------e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~-------~aid~L~~L~~  657 (963)
T 4ady_A          594 VRRAAVIALGFVLLRDY---------TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQ-------SAIDVLDPLTK  657 (963)
T ss_dssp             HHHHHHHHHHHHTSSSC---------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCH-------HHHHHHHHHHT
T ss_pred             HHHHHHHHHHhhccCCH---------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcH-------HHHHHHHHHcc
Confidence            99999999999887665         235566665554449999999999999998854421       25667788888


Q ss_pred             cCChhHHHHHHHHHHHhccCC
Q 011328          338 NAEFEIKKEAAWAISNATSGG  358 (488)
Q Consensus       338 ~~~~~v~~~a~~aL~~l~~~~  358 (488)
                      +.+..|+..|+.+|+.+....
T Consensus       658 D~d~~Vrq~Ai~ALG~Ig~gt  678 (963)
T 4ady_A          658 DPVDFVRQAAMIALSMILIQQ  678 (963)
T ss_dssp             CSSHHHHHHHHHHHHHHSTTC
T ss_pred             CCCHHHHHHHHHHHHHHhcCC
Confidence            899999999999999998654

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=99.03  E-value=1.9e-08  Score=84.33  Aligned_cols=226  Identities=18%  Similarity=0.186  Sum_probs=171.1

Q ss_pred             hchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhH
Q 011328          199 RPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQ  278 (488)
Q Consensus       199 ~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~  278 (488)
                      .+.+..+.++++..|+.++..++.+|..+....++......-..+++.++.++.++++.+...|++++..+..+.+-...
T Consensus        32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~  111 (265)
T 3b2a_A           32 KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSK  111 (265)
T ss_dssp             HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHH
T ss_pred             hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHH
Confidence            45777899999999999999999999999977544444444448899999999999999999999999999987664333


Q ss_pred             HHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCC
Q 011328          279 CIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG  358 (488)
Q Consensus       279 ~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~  358 (488)
                      .+.  .+...+.+++.++ ++-++.+++-.++-+--.+..       .+++..+.+++.+.+..++..++.++.+++...
T Consensus       112 ~y~--Kl~~aL~dlik~~-~~il~~eaae~Lgklkv~~~~-------~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S  181 (265)
T 3b2a_A          112 TFL--KAAKTLVSLLESP-DDMMRIETIDVLSKLQPLEDS-------KLVRTYINELVVSPDLYTKVAGFCLFLNMLNSS  181 (265)
T ss_dssp             HHH--HHHHHHHHHTTSC-CHHHHHHHHHHHHHCCBSCCC-------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGC
T ss_pred             HHH--HHHHHHHHHhcCC-CchHHHHHHHHhCcCCcccch-------HHHHHHHHHHHhCCChhHHHHHHHHHHHhhccc
Confidence            332  3567788899988 899999999999988432211       126777888998899999999999999998644


Q ss_pred             -CHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhh-cCC
Q 011328          359 -SNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQ-SHD  436 (488)
Q Consensus       359 -~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~-~~~  436 (488)
                       +++..     .+++.-+-.++++.|+.+++.|+.++..++.+.-..         |..-+..   +.......+. -..
T Consensus       182 ~D~~i~-----~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~---------~~~~~~~---~~~~~v~~l~~~~~  244 (265)
T 3b2a_A          182 ADSGHL-----TLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLE---------NVKIELL---KISRIVDGLVYREG  244 (265)
T ss_dssp             SSCCCG-----GGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCS---------CCHHHHH---HHHHHHHHGGGCSS
T ss_pred             CCHHHH-----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccH---------hHHHHHH---HHHHHHHHHHHhcC
Confidence             22211     256788888999999999999999999998763221         1122222   2345556665 567


Q ss_pred             CHHHHHHHHHHHHHh
Q 011328          437 NTEIYEKAVKILETY  451 (488)
Q Consensus       437 ~~~v~~~a~~~l~~~  451 (488)
                      .|.++.+|..+.+.+
T Consensus       245 ~~~~~~ka~~v~~~l  259 (265)
T 3b2a_A          245 APIIRLKAKKVSDLI  259 (265)
T ss_dssp             CHHHHHHHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHH
Confidence            789999988876654

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=99.00  E-value=5.1e-09  Score=107.48  Aligned_cols=220  Identities=15%  Similarity=0.123  Sum_probs=155.0

Q ss_pred             HHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHH-HhhCCCCHHHHHHHHHHHhhhhCC-
Q 011328           69 VIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFV-RLLSSPTDDVREQAVWALGNVAGD-  146 (488)
Q Consensus        69 ~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~-~~L~~~~~~v~~~a~~~L~~l~~~-  146 (488)
                      ..+..++| +++.|++++ ++.|..|+.+|++++. ++..+..+...+++..++ .+|.+++.++|..|+++|.||+.+ 
T Consensus        31 ~~~~~i~P-ll~~L~S~~-~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~  107 (684)
T 4gmo_A           31 LREDKILP-VLKDLKSPD-AKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEE  107 (684)
T ss_dssp             HHHHTTHH-HHHHHSSSC-CSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHS
T ss_pred             cchhhHHH-HHHHcCCCC-HHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhc
Confidence            33445555 557789999 8999999999999998 889999999888887765 578889999999999999999865 


Q ss_pred             CchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHH
Q 011328          147 SPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSY  226 (488)
Q Consensus       147 ~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~  226 (488)
                      .+.....+.+.|++++|..++.+ ..        ..+........... ......+           ..+...++.+|.+
T Consensus       108 g~d~~~~l~~~~il~~L~~~l~~-~~--------~~~~~~~~~~~~~~-~~~~~~~-----------~~~~~~~l~lL~~  166 (684)
T 4gmo_A          108 EADFCVHLYRLDVLTAIEHAAKA-VL--------ETLTTSEPPFSKLL-KAQQRLV-----------WDITGSLLVLIGL  166 (684)
T ss_dssp             CHHHHHHHHHTTHHHHHHHHHHH-HH--------HHHHCBTTBGGGSC-HHHHHHH-----------HHHHHHHHHHHHH
T ss_pred             CchHHHHHHHcChHHHHHHHHHh-hH--------HHHhhhcccccccc-HHHHHHH-----------HHHHHHHHHHHHH
Confidence            35667788899999999998832 11        11222111100000 0001111           2344567778888


Q ss_pred             hccCCchhHHHHHHhCCHHHHHHhcCC---CCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHh--cccchhhH
Q 011328          227 LSDGTNDKIQAVIEAGVCPRLVELLRH---PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLL--TQNYKKSI  301 (488)
Q Consensus       227 l~~~~~~~~~~~~~~~~l~~L~~lL~~---~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL--~~~~~~~v  301 (488)
                      ++..+++....+...+.++.++..|.+   ...+++..|+.+|..++..++...+.+.+.+....+..++  ... +...
T Consensus       167 L~e~s~~~~~~v~~~~~l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~-~~~~  245 (684)
T 4gmo_A          167 LALARDEIHEAVATKQTILRLLFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATG-TDPR  245 (684)
T ss_dssp             HHHHCHHHHHHHHTCHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHS-SCTT
T ss_pred             HHhCCHHHHHHHHhcccHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcC-CcHH
Confidence            887777777778888889999888844   2357999999999999999988888777765443332222  223 3445


Q ss_pred             HHHHHHHHHHHh
Q 011328          302 KKEACWTISNIT  313 (488)
Q Consensus       302 ~~~a~~~L~nl~  313 (488)
                      +..+++++.|+.
T Consensus       246 ~~la~giL~Ni~  257 (684)
T 4gmo_A          246 AVMACGVLHNVF  257 (684)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHhHh
Confidence            778888888874

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=98.96  E-value=1.4e-07  Score=75.66  Aligned_cols=216  Identities=17%  Similarity=0.214  Sum_probs=168.6

Q ss_pred             HcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhC-CCCHHHHHHHHHHHhhhhCCCch
Q 011328           71 QSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLS-SPTDDVREQAVWALGNVAGDSPK  149 (488)
Q Consensus        71 ~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~-~~~~~v~~~a~~~L~~l~~~~~~  149 (488)
                      +..++..++++|.++-| .++..|+.++..++...++....+     +..|+.+++ ++...+.....++++.++...|+
T Consensus        30 d~~~l~~lI~~LDDDlw-tV~kNAl~vi~~i~~~~~el~epl-----~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe  103 (253)
T 2db0_A           30 DESVLKKLIELLDDDLW-TVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPE  103 (253)
T ss_dssp             CHHHHHHHHHHTTCSCH-HHHHHHHHHHHHHHTTCGGGHHHH-----HHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHH
T ss_pred             hHHHHHHHHHHhccHHH-HHHHhHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhhcccCchHHHHHHHHhHHHHhCHH
Confidence            45688999999998884 899999999999999878776655     455666654 56677777788999999877765


Q ss_pred             hHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhcc
Q 011328          150 CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSD  229 (488)
Q Consensus       150 ~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~  229 (488)
                      .-+     +.++.+..-. .-.++.++.+..++|..+....|    ....+++.-+..++.++|..=+..++..++.+..
T Consensus       104 ~v~-----~vVp~lfany-rigd~kikIn~~yaLeeIaranP----~l~~~v~rdi~smltskd~~Dkl~aLnFi~alGe  173 (253)
T 2db0_A          104 LVK-----SMIPVLFANY-RIGDEKTKINVSYALEEIAKANP----MLMASIVRDFMSMLSSKNREDKLTALNFIEAMGE  173 (253)
T ss_dssp             HHH-----HHHHHHHHHS-CCCSHHHHHHHHHHHHHHHHHCH----HHHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCT
T ss_pred             HHH-----hhHHHHHHHH-hcCCccceecHHHHHHHHHHhCh----HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhc
Confidence            322     2455666655 44599999999999999987653    4557788888999999998888889999988887


Q ss_pred             CCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHH
Q 011328          230 GTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTI  309 (488)
Q Consensus       230 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L  309 (488)
                      +......     ..++.|..+|.+.+.-+|..|..+|.+++..++..+..      +...+.-+++. +..++...-.+|
T Consensus       174 n~~~yv~-----PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRki------i~~kl~e~~D~-S~lv~~~V~egL  241 (253)
T 2db0_A          174 NSFKYVN-----PFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKV------VIKRLEELNDT-SSLVNKTVKEGI  241 (253)
T ss_dssp             TTHHHHG-----GGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHH------HHHHHHHCCCS-CHHHHHHHHHHH
T ss_pred             cCccccC-----cchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHH------HHHHHHHhcCc-HHHHHHHHHHHH
Confidence            6653322     78899999999999999999999999999988875543      33456666777 777887777777


Q ss_pred             HHHhc
Q 011328          310 SNITA  314 (488)
Q Consensus       310 ~nl~~  314 (488)
                      +.+..
T Consensus       242 ~rl~l  246 (253)
T 2db0_A          242 SRLLL  246 (253)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            77664

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=98.90  E-value=1.5e-07  Score=78.94  Aligned_cols=189  Identities=15%  Similarity=0.149  Sum_probs=153.8

Q ss_pred             hccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchh
Q 011328           29 LESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN  108 (488)
Q Consensus        29 ~~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~  108 (488)
                      -+.+..++++|..+|+.++.+++.+|.++++.. +...+...-..+++.+++++.+.+ +.+...|++|+..+..+.|-.
T Consensus        32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~-~~~l~~~~~e~~Ld~iI~llk~~d-Ekval~A~r~L~~LLe~vpL~  109 (265)
T 3b2a_A           32 KRALFLILELAGEDDETTRLRAFVALGEILKRA-DSDLRMMVLERHLDVFINALSQEN-EKVTIKALRALGYLVKDVPMG  109 (265)
T ss_dssp             HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTCCSTT-HHHHHHHHHHHHHHHTTCCBC
T ss_pred             hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhc-cccccHHHHHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHcCCCCC
Confidence            467888999999999999999999999999875 345555555679999999999999 999999999999999977655


Q ss_pred             hHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhc
Q 011328          109 TRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR  188 (488)
Q Consensus       109 ~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~  188 (488)
                      .+.+..  ++.++...+.++++-++..++..++.+---.+  ...     .+..+..++ .+.|..++..++.++.+++.
T Consensus       110 ~~~y~K--l~~aL~dlik~~~~il~~eaae~Lgklkv~~~--~~~-----V~~~l~sLl-~Skd~~vK~agl~~L~eia~  179 (265)
T 3b2a_A          110 SKTFLK--AAKTLVSLLESPDDMMRIETIDVLSKLQPLED--SKL-----VRTYINELV-VSPDLYTKVAGFCLFLNMLN  179 (265)
T ss_dssp             HHHHHH--HHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCC--CHH-----HHHHHHHHH-TCSSHHHHHHHHHHHHHHGG
T ss_pred             HHHHHH--HHHHHHHHhcCCCchHHHHHHHHhCcCCcccc--hHH-----HHHHHHHHH-hCCChhHHHHHHHHHHHhhc
Confidence            555543  46889999999999999999999999932221  112     356778888 89999999999999999998


Q ss_pred             CCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCC
Q 011328          189 GKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGT  231 (488)
Q Consensus       189 ~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~  231 (488)
                      ....  ......++.-+-.++++.|+.++..|+.++-.+...+
T Consensus       180 ~S~D--~~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~p  220 (265)
T 3b2a_A          180 SSAD--SGHLTLILDEIPSLLQNDNEFIVELALDVLEKALSFP  220 (265)
T ss_dssp             GCSS--CCCGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSC
T ss_pred             ccCC--HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCc
Confidence            6522  2234566667788999999999999999999988654

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=98.88  E-value=2.8e-08  Score=91.76  Aligned_cols=241  Identities=14%  Similarity=0.097  Sum_probs=138.6

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHH
Q 011328           32 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRV  111 (488)
Q Consensus        32 i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~  111 (488)
                      .+.+.+.++++++-++-.|++.|+++...   +..+     .+.+.+.+.|.+.+ +.||..|+.+...+....|+... 
T Consensus       106 ~Nsl~kDl~~~N~~iR~lALRtL~~I~~~---~m~~-----~l~~~lk~~L~d~~-pyVRk~A~l~~~kL~~~~pe~v~-  175 (355)
T 3tjz_B          106 TSSLTKDMTGKEDSYRGPAVRALCQITDS---TMLQ-----AIERYMKQAIVDKV-PSVSSSALVSSLHLLKCSFDVVK-  175 (355)
T ss_dssp             HHHHHHHHHSSCHHHHHHHHHHHHHHCCT---TTHH-----HHHHHHHHHHTCSS-HHHHHHHHHHHHHHTTTCHHHHH-
T ss_pred             HHHHHhhcCCCcHhHHHHHHHHHhcCCCH---HHHH-----HHHHHHHHHcCCCC-HHHHHHHHHHHHHHhccCHHHHH-
Confidence            66889999999999999999999998653   3233     35667888999999 99999999999999987776543 


Q ss_pred             HHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccc--cHhHHHHHHHHHHHhhcC
Q 011328          112 VIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHA--KLSMLRNATWTLSNFCRG  189 (488)
Q Consensus       112 ~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~--~~~v~~~a~~~L~~l~~~  189 (488)
                          ++++.+..++.+.++-++.+|+.++..+...+..         .+..++..+.+..  ++-.+...+..+..++..
T Consensus       176 ----~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~~---------a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~  242 (355)
T 3tjz_B          176 ----RWVNEAQEAASSDNIMVQYHALGLLYHVRKNDRL---------AVSKMISKFTRHGLKSPFAYCMMIRVASRQLED  242 (355)
T ss_dssp             ----TTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCHH---------HHHHHHHHHHSSCCSCHHHHHHHHHHHTCC---
T ss_pred             ----HHHHHHHHHhcCCCccHHHHHHHHHHHHHhhchH---------HHHHHHHHHhcCCCcChHHHHHHHHHHHHhccc
Confidence                5789999999999999999999999999875431         3445566553321  343344444444343332


Q ss_pred             CCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHh
Q 011328          190 KPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNI  269 (488)
Q Consensus       190 ~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l  269 (488)
                      +   ........++.+...+++.++.|...|++++..+......    .. ..++..+..++.++++.+|..|+..|..+
T Consensus       243 d---~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~~----~~-~~a~~~L~~fLss~d~niryvaLr~L~~l  314 (355)
T 3tjz_B          243 E---DGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSAK----EL-APAVSVLQLFCSSPKAALRYAAVRTLNKV  314 (355)
T ss_dssp             -----------------CCCCCSSHHHHHHHHHHHTC----------------CCCTHHHHHHSSSSSSHHHHHHCC---
T ss_pred             c---chhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCHH----HH-HHHHHHHHHHHcCCCchHHHHHHHHHHHH
Confidence            2   1123356777888888999999999999999998653321    11 24567777788889999999999999999


Q ss_pred             hcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHH
Q 011328          270 VTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTI  309 (488)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L  309 (488)
                      +...+....     ..-.-+.+++.++ +..+...|..+|
T Consensus       315 ~~~~P~~v~-----~~n~~ie~li~d~-n~sI~t~Aittl  348 (355)
T 3tjz_B          315 AMKHPSAVT-----ACNLDLENLVTDA-NRSIATLAITTL  348 (355)
T ss_dssp             ----------------------------------------
T ss_pred             HHHCcHHHH-----HHHHHHHHHccCC-cHhHHHHHHHHh
Confidence            987765443     2344577788887 776666655544

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=98.88  E-value=4.5e-07  Score=93.21  Aligned_cols=271  Identities=13%  Similarity=0.130  Sum_probs=186.9

Q ss_pred             CCHHHHHHhhc---CCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCC--------HHHHHHHHHHHh
Q 011328           73 GVVPRFIEFLS---RDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPT--------DDVREQAVWALG  141 (488)
Q Consensus        73 ~~i~~L~~lL~---~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~--------~~v~~~a~~~L~  141 (488)
                      +++..|-+.|.   +++ +.++..|+.+|+-+..+...        .++..|...+.+++        +.++..|+..|+
T Consensus       392 ~gl~~L~~yL~~~~s~~-~~ik~GAllaLGli~ag~~~--------~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG  462 (963)
T 4ady_A          392 EGKKVMAPYLPGSRASS-RFIKGGSLYGLGLIYAGFGR--------DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG  462 (963)
T ss_dssp             THHHHHTTTSTTSCCSC-HHHHHHHHHHHHHHTTTTTH--------HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccccCCCc-HHHHHHHHHHHHHhcCCCcH--------HHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence            34666666776   445 88999999999999885432        14677777776544        778989999999


Q ss_pred             hhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhh-ccCChhHHHHH
Q 011328          142 NVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLI-HSNDDEVLTDA  220 (488)
Q Consensus       142 ~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll-~~~~~~v~~~a  220 (488)
                      .+..++..  +.     ++..|...+ .+.+..++..++.+|..+.-+..+      ..++..|+..+ .+.+..++..+
T Consensus       463 la~~GS~~--ee-----v~e~L~~~L-~dd~~~~~~~AalALGli~vGTgn------~~ai~~LL~~~~e~~~e~vrR~a  528 (963)
T 4ady_A          463 LAAMGSAN--IE-----VYEALKEVL-YNDSATSGEAAALGMGLCMLGTGK------PEAIHDMFTYSQETQHGNITRGL  528 (963)
T ss_dssp             HHSTTCCC--HH-----HHHHHHHHH-HTCCHHHHHHHHHHHHHHHTTCCC------HHHHHHHHHHHHHCSCHHHHHHH
T ss_pred             HHhcCCCC--HH-----HHHHHHHHH-hcCCHHHHHHHHHHHhhhhcccCC------HHHHHHHHHHHhccCcHHHHHHH
Confidence            97654431  12     345677777 444445666788888766443211      23455555554 34578899999


Q ss_pred             HHHHHHhccCCchhHHHHHHhCCHHHHHHhcC-CCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchh
Q 011328          221 CWALSYLSDGTNDKIQAVIEAGVCPRLVELLR-HPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKK  299 (488)
Q Consensus       221 l~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~  299 (488)
                      +.+|+.+....++..         +.+++.|. +.++.+|..++.+++.-..+....       ..++.|+..+.+..+.
T Consensus       529 algLGll~~g~~e~~---------~~li~~L~~~~dp~vRygaa~alglAyaGTGn~-------~aIq~LL~~~~~d~~d  592 (963)
T 4ady_A          529 AVGLALINYGRQELA---------DDLITKMLASDESLLRYGGAFTIALAYAGTGNN-------SAVKRLLHVAVSDSND  592 (963)
T ss_dssp             HHHHHHHTTTCGGGG---------HHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCH-------HHHHHHHHHHHHCSCH
T ss_pred             HHHHHhhhCCChHHH---------HHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCH-------HHHHHHHHHhccCCcH
Confidence            999998876665443         44444543 467888988888887655544432       2345556655444378


Q ss_pred             hHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHH-hcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhh
Q 011328          300 SIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLL-LNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDL  378 (488)
Q Consensus       300 ~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll-~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~l  378 (488)
                      .+|..|+.+|+.+..++++         .++.++..+ ++.++.+|..|+.+|+.+.......        .+++.|..+
T Consensus       593 ~VRraAViaLGlI~~g~~e---------~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~--------~aid~L~~L  655 (963)
T 4ady_A          593 DVRRAAVIALGFVLLRDYT---------TVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQ--------SAIDVLDPL  655 (963)
T ss_dssp             HHHHHHHHHHHHHTSSSCS---------SHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCH--------HHHHHHHHH
T ss_pred             HHHHHHHHHHHhhccCCHH---------HHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcH--------HHHHHHHHH
Confidence            8999999999998876543         456666644 4569999999999999997543211        246777888


Q ss_pred             cCCCCHHHHHHHHHHHHHHHH
Q 011328          379 LNCPDPRIVTVCLEGLENILK  399 (488)
Q Consensus       379 l~~~~~~v~~~al~~L~~l~~  399 (488)
                      .++++..|+..|+.+|..+..
T Consensus       656 ~~D~d~~Vrq~Ai~ALG~Ig~  676 (963)
T 4ady_A          656 TKDPVDFVRQAAMIALSMILI  676 (963)
T ss_dssp             HTCSSHHHHHHHHHHHHHHST
T ss_pred             ccCCCHHHHHHHHHHHHHHhc
Confidence            899999999999999997754

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=98.87  E-value=1.7e-08  Score=89.78  Aligned_cols=187  Identities=14%  Similarity=0.218  Sum_probs=144.5

Q ss_pred             HHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhc-cCChhHHHHHHHHHHHhccCCchhHHHHH
Q 011328          161 MPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH-SNDDEVLTDACWALSYLSDGTNDKIQAVI  239 (488)
Q Consensus       161 ~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~-~~~~~v~~~al~~L~~l~~~~~~~~~~~~  239 (488)
                      +.+.+.+ .+.+...|..++..|..+....+.........+++.+...+. +.+..++..++.+++.++..-........
T Consensus        18 ~~l~~~l-~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~   96 (242)
T 2qk2_A           18 KDFYDKL-EEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYA   96 (242)
T ss_dssp             TTHHHHH-TCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHH
T ss_pred             HHHHhhh-ccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence            3466777 778899999999999999876322111223578888999995 88999999999999999965433333333


Q ss_pred             HhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcC-CHH
Q 011328          240 EAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG-NVN  318 (488)
Q Consensus       240 ~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~  318 (488)
                      . .+++.++..+.++++.+|..+..++..++....  ..     .+++.+...+++. ++.+|..++..+..+... .++
T Consensus        97 ~-~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~--~~-----~ll~~l~~~l~~~-~~~vr~~~l~~l~~~l~~~~~~  167 (242)
T 2qk2_A           97 S-ACVPSLLEKFKEKKPNVVTALREAIDAIYASTS--LE-----AQQESIVESLSNK-NPSVKSETALFIARALTRTQPT  167 (242)
T ss_dssp             H-HHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC--HH-----HHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTCCGG
T ss_pred             H-HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC--HH-----HHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHcCCC
Confidence            3 678999999999999999999999999987433  11     3678889999998 999999999999997653 233


Q ss_pred             H-HHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCC
Q 011328          319 Q-IQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG  358 (488)
Q Consensus       319 ~-~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~  358 (488)
                      . ....+. .++|.|..++.+.++++|..|..+++.++..-
T Consensus       168 ~~~~~~l~-~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~v  207 (242)
T 2qk2_A          168 ALNKKLLK-LLTTSLVKTLNEPDPTVRDSSAEALGTLIKLM  207 (242)
T ss_dssp             GCCHHHHH-HHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHH
T ss_pred             CccHHHHH-HHHHHHHHHhcCCChHHHHHHHHHHHHHHHHc
Confidence            1 122222 48999999999999999999999999998543

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9

Probab=98.87  E-value=8.4e-07  Score=83.79  Aligned_cols=323  Identities=12%  Similarity=0.123  Sum_probs=197.4

Q ss_pred             hCCCHHHHHHhhCC-CCHHHHHHHHHHHhhhhCCCc---hhHHHHHhcCCh-HHHHHHhcccccHhHHHHHHHHHHHhhc
Q 011328          114 DHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSP---KCRDLVLSNGAL-MPLLAQFNEHAKLSMLRNATWTLSNFCR  188 (488)
Q Consensus       114 ~~g~i~~L~~~L~~-~~~~v~~~a~~~L~~l~~~~~---~~~~~~~~~~~l-~~L~~ll~~~~~~~v~~~a~~~L~~l~~  188 (488)
                      +......++.+|.. .+.++.+..+..+..+..+++   .....+.+.... ..+........+.-....++.++..++.
T Consensus        75 ~~~~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~  154 (480)
T 1ho8_A           75 NGKTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQ  154 (480)
T ss_dssp             SSTTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTS
T ss_pred             CchHHHHHHHHHhhcChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHhc
Confidence            34567888888875 789999999999999988776   333333333222 2233322233344455666666666654


Q ss_pred             CCCCCChhhhhchHH--HHHHhhccC-ChhHHHHHHHHHHHhccCCchhHHHHHHh--CCHHHHHHhcC----CC-----
Q 011328          189 GKPQPLFEQTRPALP--ALERLIHSN-DDEVLTDACWALSYLSDGTNDKIQAVIEA--GVCPRLVELLR----HP-----  254 (488)
Q Consensus       189 ~~~~~~~~~~~~~~~--~l~~ll~~~-~~~v~~~al~~L~~l~~~~~~~~~~~~~~--~~l~~L~~lL~----~~-----  254 (488)
                      ..+. .......++.  .+...+++. +...+..++.++..+...... ...+.+.  ..++.++.++.    +.     
T Consensus       155 ~~~~-~~~~l~~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~-R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~  232 (480)
T 1ho8_A          155 NGLH-NVKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEY-RDVIWLHEKKFMPTLFKILQRATDSQLATRI  232 (480)
T ss_dssp             TTTC-CHHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHH-HHHHHTTHHHHHHHHHHHHHHHHC-------
T ss_pred             cCCc-cHhHHHHHhhhHHHHHHhccccCCchHHHHHHHHHHHhcchhH-HHHHHHcccchhHHHHHHHHHhhcccccccc
Confidence            4322 2233344444  455556553 445566788888888776543 3445443  23555544322    11     


Q ss_pred             --------CcchHhHHHHHHhHhhcCCchhhHHHhhCCCh--HHHHHHhcccchhhHHHHHHHHHHHHhcCCH----HHH
Q 011328          255 --------SPSVLIPALRTVGNIVTGDDMQTQCIINHQAL--PCLLDLLTQNYKKSIKKEACWTISNITAGNV----NQI  320 (488)
Q Consensus       255 --------~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~--~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~----~~~  320 (488)
                              ..+++..++.+++.++... .....+...++.  ..++.+++....+++-+-++.++.|+....+    ...
T Consensus       233 ~~~~~~~~~~Ql~Y~~ll~iWlLSF~~-~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~  311 (480)
T 1ho8_A          233 VATNSNHLGIQLQYHSLLLIWLLTFNP-VFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVI  311 (480)
T ss_dssp             ------CCHHHHHHHHHHHHHHHTTSH-HHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHH
T ss_pred             ccccCCCccHHHHHHHHHHHHHHHcCH-HHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHH
Confidence                    2456788999999998844 455555555543  5677778776578899999999999998542    222


Q ss_pred             HH-HHHcCChHHHHHHHhcC---ChhHHHHHHHHHHHhcc---CCC--HHHHH------------------------HHH
Q 011328          321 QA-IIEAGIIGPLVNLLLNA---EFEIKKEAAWAISNATS---GGS--NEQIK------------------------FLV  367 (488)
Q Consensus       321 ~~-l~~~~~l~~L~~ll~~~---~~~v~~~a~~aL~~l~~---~~~--~~~~~------------------------~l~  367 (488)
                      .. ++..++ +.++..|...   |+++....-.....+-.   .-+  .+...                        .+.
T Consensus       312 ~~~~~~~~~-l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~  390 (480)
T 1ho8_A          312 KQLLLLGNA-LPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFK  390 (480)
T ss_dssp             HHHHHHHCH-HHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGS
T ss_pred             HHHHHHccc-hHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHH
Confidence            32 333344 4456666543   66554332222222210   000  01111                        111


Q ss_pred             HC--CChHHHHhhcCC----------CCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcC
Q 011328          368 SQ--GCIKPLCDLLNC----------PDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSH  435 (488)
Q Consensus       368 ~~--~~i~~L~~ll~~----------~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~  435 (488)
                      ++  .++..|.++|++          .|+.+...|+.=++.+++.-+.            .+..+.+.|+-+.+.+|+++
T Consensus       391 e~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~------------gr~i~~~lg~K~~VM~Lm~h  458 (480)
T 1ho8_A          391 KDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPE------------SIDVLDKTGGKADIMELLNH  458 (480)
T ss_dssp             SGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTT------------HHHHHHHHSHHHHHHHHTSC
T ss_pred             hcchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcc------------hhHHHHHcCcHHHHHHHhcC
Confidence            11  346788888873          3677788888888888887664            37788899999999999999


Q ss_pred             CCHHHHHHHHHHHHHhc
Q 011328          436 DNTEIYEKAVKILETYW  452 (488)
Q Consensus       436 ~~~~v~~~a~~~l~~~~  452 (488)
                      +|++|+..|..++.++.
T Consensus       459 ~d~~Vr~~AL~avQklm  475 (480)
T 1ho8_A          459 SDSRVKYEALKATQAII  475 (480)
T ss_dssp             SSHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHH
Confidence            99999999999887653

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=98.84  E-value=1.5e-08  Score=103.94  Aligned_cols=196  Identities=13%  Similarity=0.079  Sum_probs=148.1

Q ss_pred             chHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHH-HHhcCCCCcchHhHHHHHHhHhhcCC-chhh
Q 011328          200 PALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRL-VELLRHPSPSVLIPALRTVGNIVTGD-DMQT  277 (488)
Q Consensus       200 ~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L-~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~~  277 (488)
                      .++| +++.|+++++..+..|+++|.+++.+ +...+.+...+++..+ ..+|.+++.++|..|+++|.||+... ....
T Consensus        35 ~i~P-ll~~L~S~~~~~r~~A~~al~~l~~~-~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~  112 (684)
T 4gmo_A           35 KILP-VLKDLKSPDAKSRTTAAGAIANIVQD-AKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFC  112 (684)
T ss_dssp             TTHH-HHHHHSSSCCSHHHHHHHHHHHHTTS-HHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred             hHHH-HHHHcCCCCHHHHHHHHHHHHHHHcC-cHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHH
Confidence            4455 55678999999999999999999974 4555667777888765 56788899999999999999999753 4566


Q ss_pred             HHHhhCCChHHHHHHhcccch--------------------hhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh
Q 011328          278 QCIINHQALPCLLDLLTQNYK--------------------KSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLL  337 (488)
Q Consensus       278 ~~~~~~~~~~~L~~lL~~~~~--------------------~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~  337 (488)
                      ..++..++++.|..++.....                    ..+...++.+|.+++.++.+....+...+.++.|+..+.
T Consensus       113 ~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~  192 (684)
T 4gmo_A          113 VHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLI  192 (684)
T ss_dssp             HHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHH
Confidence            778899999999998854210                    123346778889999888888888888899999999886


Q ss_pred             cC---ChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHH---HHhhcCCCCHHHHHHHHHHHHHHHH
Q 011328          338 NA---EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKP---LCDLLNCPDPRIVTVCLEGLENILK  399 (488)
Q Consensus       338 ~~---~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~---L~~ll~~~~~~v~~~al~~L~~l~~  399 (488)
                      +.   ..+++..|+.+|..++.. +.+....+.+.+....   +..+.++.+ ..+..++..|.|++.
T Consensus       193 ~~~~~~~~v~~~a~~~L~~ls~d-n~~~~~~i~~~~~~~~~~~ll~~~~~~~-~~~~la~giL~Ni~~  258 (684)
T 4gmo_A          193 SADIAPQDIYEEAISCLTTLSED-NLKVGQAITDDQETHVYDVLLKLATGTD-PRAVMACGVLHNVFT  258 (684)
T ss_dssp             HHCCSCHHHHHHHHHHHHHHHTT-CHHHHHHHHTCCSSCHHHHHHHHHHSSC-TTHHHHHHHHHHHHH
T ss_pred             hcCCCcHHHHHHHHHHHHHHhcc-CHHHHHHHHhcchHHHHHHHHHHhcCCc-HHHHHHHHHHHhHhh
Confidence            53   357999999999999875 4577777777665433   333333333 345667788888764

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=98.77  E-value=2.4e-08  Score=88.75  Aligned_cols=186  Identities=14%  Similarity=0.185  Sum_probs=141.0

Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhh
Q 011328          119 PIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQT  198 (488)
Q Consensus       119 ~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~  198 (488)
                      +.+.+.+++.+...|..++..|..++...+....... ...++.+...+.++.+..++..++.++..++..-...-....
T Consensus        18 ~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~-~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~   96 (242)
T 2qk2_A           18 KDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY-GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYA   96 (242)
T ss_dssp             TTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC-HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHH
T ss_pred             HHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCH-HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence            4577788899999999999999999765222110000 123556666663378889999999999999965422223455


Q ss_pred             hchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCC-ch-h
Q 011328          199 RPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGD-DM-Q  276 (488)
Q Consensus       199 ~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~~-~  276 (488)
                      ..++|.++..+.+.+..++..+..++..++...+  ..     .+++.+...+.+.++.+|..++..|+.+.... +. .
T Consensus        97 ~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~--~~-----~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~  169 (242)
T 2qk2_A           97 SACVPSLLEKFKEKKPNVVTALREAIDAIYASTS--LE-----AQQESIVESLSNKNPSVKSETALFIARALTRTQPTAL  169 (242)
T ss_dssp             HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC--HH-----HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGC
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC--HH-----HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCc
Confidence            7789999999999999999999999999987543  12     46788889999999999999999999965543 32 1


Q ss_pred             hHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhc
Q 011328          277 TQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA  314 (488)
Q Consensus       277 ~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~  314 (488)
                      ....+. .+++.+...+.++ ++++|..|..+++.++.
T Consensus       170 ~~~~l~-~l~p~l~~~l~D~-~~~VR~~A~~~l~~l~~  205 (242)
T 2qk2_A          170 NKKLLK-LLTTSLVKTLNEP-DPTVRDSSAEALGTLIK  205 (242)
T ss_dssp             CHHHHH-HHHHHHHHHHTSS-CHHHHHHHHHHHHHHHH
T ss_pred             cHHHHH-HHHHHHHHHhcCC-ChHHHHHHHHHHHHHHH
Confidence            222333 6889999999988 99999999999999986

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=98.73  E-value=8.9e-08  Score=85.05  Aligned_cols=191  Identities=10%  Similarity=0.085  Sum_probs=141.7

Q ss_pred             HHHHhcccccHhHHHHHHHHHHH-hhcCCCCCC--hhhhhchHHHHHHhh-ccCChhHHHHHHHHHHHhccCCc-hhHH-
Q 011328          163 LLAQFNEHAKLSMLRNATWTLSN-FCRGKPQPL--FEQTRPALPALERLI-HSNDDEVLTDACWALSYLSDGTN-DKIQ-  236 (488)
Q Consensus       163 L~~ll~~~~~~~v~~~a~~~L~~-l~~~~~~~~--~~~~~~~~~~l~~ll-~~~~~~v~~~al~~L~~l~~~~~-~~~~-  236 (488)
                      +...+ .+.+..-|..++..|.. ++.+.+...  ......++..+.+.+ .+.+..++..++.+++.++..-. .... 
T Consensus        21 f~~~l-~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~   99 (249)
T 2qk1_A           21 FQERI-TSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK   99 (249)
T ss_dssp             HHHHH-TCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred             HHHHh-hcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence            34455 67888999999999999 876532222  222356788889999 68899999999999999985432 2222 


Q ss_pred             HHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCC
Q 011328          237 AVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGN  316 (488)
Q Consensus       237 ~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~  316 (488)
                      .... .+++.++..+.+..+.++..+..++..++...+.....-.-..+++.+...|+++ ++.+|..++.+|..++...
T Consensus       100 ~y~~-~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k-~~~vk~~al~~l~~~~~~~  177 (249)
T 2qk1_A          100 DYVS-LVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHK-TPQIRMECTQLFNASMKEE  177 (249)
T ss_dssp             HHHH-HHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHC
T ss_pred             HHHH-HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHc
Confidence            2332 4789999999998899999999998888874422111000013677888999999 9999999999999998733


Q ss_pred             H---HHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhcc
Q 011328          317 V---NQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS  356 (488)
Q Consensus       317 ~---~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~  356 (488)
                      +   ......+...++|.|..++.+.+.+||..|..+++.++.
T Consensus       178 ~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~  220 (249)
T 2qk1_A          178 KDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK  220 (249)
T ss_dssp             CSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred             CCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            3   444444424699999999999999999999999999874

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=98.73  E-value=1.2e-07  Score=84.16  Aligned_cols=190  Identities=12%  Similarity=0.168  Sum_probs=140.2

Q ss_pred             HHHhhcCCCChhHHHHHHHHHHH-hcCCCchhhHHHHh-CCCHHHHHHhh-CCCCHHHHHHHHHHHhhhhCCC--chhH-
Q 011328           78 FIEFLSRDDFPQLQFEAAWALTN-IASGTSENTRVVID-HGAVPIFVRLL-SSPTDDVREQAVWALGNVAGDS--PKCR-  151 (488)
Q Consensus        78 L~~lL~~~~~~~v~~~a~~~L~~-l~~~~~~~~~~~~~-~g~i~~L~~~L-~~~~~~v~~~a~~~L~~l~~~~--~~~~-  151 (488)
                      +.+.+++.+ -..|..|+..|.. ++.+.++....-.+ ..++..|.+.+ .+.+..++..|+.+++.++.+-  +.+. 
T Consensus        21 f~~~l~s~~-w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~   99 (249)
T 2qk1_A           21 FQERITSSK-WKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK   99 (249)
T ss_dssp             HHHHHTCSS-HHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred             HHHHhhcCC-HHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence            445668888 6889999999999 87544432200001 13467788888 6789999999999999998432  2232 


Q ss_pred             HHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCCh-hhhhchHHHHHHhhccCChhHHHHHHHHHHHhccC
Q 011328          152 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLF-EQTRPALPALERLIHSNDDEVLTDACWALSYLSDG  230 (488)
Q Consensus       152 ~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~-~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~  230 (488)
                      ....  ..++.++..+ .+....++..+..++..++...+.... .....+++.+...+++.++.++..++.+|..++..
T Consensus       100 ~y~~--~llp~ll~~l-~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~  176 (249)
T 2qk1_A          100 DYVS--LVFTPLLDRT-KEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKE  176 (249)
T ss_dssp             HHHH--HHHHHHHHGG-GCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHH
T ss_pred             HHHH--HHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Confidence            2322  2578888888 667788999999999998875422111 12567899999999999999999999999999865


Q ss_pred             Cc---hhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhc
Q 011328          231 TN---DKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVT  271 (488)
Q Consensus       231 ~~---~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~  271 (488)
                      ..   ......+...+++.+.+++.+.++.+|..|..+++.++.
T Consensus       177 ~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~  220 (249)
T 2qk1_A          177 EKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK  220 (249)
T ss_dssp             CCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred             cCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            44   222333424889999999999999999999999999875

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=98.61  E-value=4.4e-06  Score=87.04  Aligned_cols=303  Identities=12%  Similarity=0.147  Sum_probs=212.6

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCC---c
Q 011328           30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGT---S  106 (488)
Q Consensus        30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~---~  106 (488)
                      ..+..+++.+...+..-+..++..+..+..+.....   .+..+++..+.+.+.+.. ..  +.|+.++..++...   +
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~k~-~~--~~a~~~~~~~~~~~~~~~   87 (986)
T 2iw3_A           14 KVLEELFQKLSVATADNRHEIASEVASFLNGNIIEH---DVPEHFFGELAKGIKDKK-TA--ANAMQAVAHIANQSNLSP   87 (986)
T ss_dssp             HHHHHHHHHHTTCCTTTHHHHHHHHHHHHTSSCSSS---SCCHHHHHHHHHHHTSHH-HH--HHHHHHHHHHTCTTTCCT
T ss_pred             HHHHHHHhhccccchhHHHHHHHHHHHHHhcccccc---ccchhHHHHHHHHHhccC-CH--HHHHHHHHHHHHhcCCCC
Confidence            445567777776556666788888888776431111   111367888888888776 33  99999999999533   1


Q ss_pred             hhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHh
Q 011328          107 ENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNF  186 (488)
Q Consensus       107 ~~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l  186 (488)
                      ..-..++  +.++.++..+.+....+|..|-.++..++..-+...-    ...++.++..+........+..|+.++..+
T Consensus        88 ~~e~~~~--~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~  161 (986)
T 2iw3_A           88 SVEPYIV--QLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI----KALLPHLTNAIVETNKWQEKIAILAAFSAM  161 (986)
T ss_dssp             TTHHHHH--TTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred             CcccchH--HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH----HHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence            2222233  5789999998888899999998888887654332211    235788888885555788999999999999


Q ss_pred             hcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCc-hhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHH
Q 011328          187 CRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTN-DKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT  265 (488)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~-~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~  265 (488)
                      +...+.........++|.+...+.+..++|...+..++..+|..-+ ..++     ..++.|++.+.+++.  ...++..
T Consensus       162 ~~~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~-----~~~~~~~~~~~~p~~--~~~~~~~  234 (986)
T 2iw3_A          162 VDAAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIE-----RFIPSLIQCIADPTE--VPETVHL  234 (986)
T ss_dssp             HHHSHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTG-----GGHHHHHHHHHCTTH--HHHHHHH
T ss_pred             HHHhHHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcchh-----hhHHHHHHHhcChhh--hHHHHHH
Confidence            9765444444567889999999999999999999999988885322 1122     678999999988743  4455666


Q ss_pred             HhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhc--CCHHHHHHHHHcCChHHHHHHHhcC-Chh
Q 011328          266 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA--GNVNQIQAIIEAGIIGPLVNLLLNA-EFE  342 (488)
Q Consensus       266 L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~--~~~~~~~~l~~~~~l~~L~~ll~~~-~~~  342 (488)
                      |+.-+.-..... ..+ +=..|.|.+-|... ...+++.++-++.|++.  .++.....++. .++|.+-+....- +|+
T Consensus       235 l~~~tfv~~v~~-~~l-~~~~p~l~r~l~~~-~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~-~l~p~~~~~~~~~~~pe  310 (986)
T 2iw3_A          235 LGATTFVAEVTP-ATL-SIMVPLLSRGLNER-ETGIKRKSAVIIDNMCKLVEDPQVIAPFLG-KLLPGLKSNFATIADPE  310 (986)
T ss_dssp             HTTCCCCSCCCH-HHH-HHHHHHHHHHHTSS-SHHHHHHHHHHHHHHHTTCCCHHHHHHHHT-TTHHHHHHHTTTCCSHH
T ss_pred             hhcCeeEeeecc-hhH-HHHHHHHHhhhccC-cchhheeeEEEEcchhhhcCCHHHHhhhhh-hhhhHHHHHhhccCCHH
Confidence            655443222111 111 12456677777777 78899999999999998  67777766665 5888888777664 899


Q ss_pred             HHHHHHHHHHHhc
Q 011328          343 IKKEAAWAISNAT  355 (488)
Q Consensus       343 v~~~a~~aL~~l~  355 (488)
                      +|+.|..|+..|.
T Consensus       311 ~r~~~~~a~~~l~  323 (986)
T 2iw3_A          311 AREVTLRALKTLR  323 (986)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999888888874

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=98.59  E-value=1.1e-05  Score=86.72  Aligned_cols=389  Identities=9%  Similarity=0.051  Sum_probs=219.2

Q ss_pred             ccHHHHHHHhcC--CCHHHHHHHHHHHHHHhccCC---------CccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHH
Q 011328           30 ESLPAMVAGVWS--DDRNIQLDATTQFRKLLSIER---------SPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWAL   98 (488)
Q Consensus        30 ~~i~~l~~~L~s--~~~~~~~~a~~~L~~l~~~~~---------~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L   98 (488)
                      +....|+..+.+  .+..+|..|+..|.+.+...-         ++..+..++.    .+++.+.++. ..+|..++.++
T Consensus        35 ~~~~~L~~il~~~~~~~~vR~~A~i~lkn~i~~~w~~~~~~~~l~~~~k~~ik~----~ll~~l~~~~-~~ir~~l~~~i  109 (960)
T 1wa5_C           35 GFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDENGNHLLPANNVELIKK----EIVPLMISLP-NNLQVQIGEAI  109 (960)
T ss_dssp             THHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSSSCBSSCHHHHHHHHH----HHHHHHHHSC-HHHHHHHHHHH
T ss_pred             CHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHHHHHHHH----HHHHHHHhCC-HHHHHHHHHHH
Confidence            445567777754  467899999999999876421         1112333333    3444444556 79999999999


Q ss_pred             HHhcCC-CchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCc------hhHHHHH--hcCChHHHHHH---
Q 011328           99 TNIASG-TSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSP------KCRDLVL--SNGALMPLLAQ---  166 (488)
Q Consensus        99 ~~l~~~-~~~~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~------~~~~~~~--~~~~l~~L~~l---  166 (488)
                      +.++.. .++..     .+.++.|+..++++++..+..++.++..++....      +.+..+.  -....++++.+   
T Consensus       110 a~ia~~d~p~~W-----p~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~ll~~~~~  184 (960)
T 1wa5_C          110 SSIADSDFPDRW-----PTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKT  184 (960)
T ss_dssp             HHHHHHHSTTTC-----TTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhCccch-----hHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999872 12111     3578999999988888899999999999986321      1111110  01123333332   


Q ss_pred             ----hcccc-c-------HhHHHHHHHHHHHhhcCC-CCCChhhhhchHHHHHHhhccC------C---------hhHHH
Q 011328          167 ----FNEHA-K-------LSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIHSN------D---------DEVLT  218 (488)
Q Consensus       167 ----l~~~~-~-------~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~~~l~~ll~~~------~---------~~v~~  218 (488)
                          +.... +       ..+...++.++..+.... +..........++.+..++...      +         ..++.
T Consensus       185 ~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~d~d~~~~~~~~~vk~  264 (960)
T 1wa5_C          185 VDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNIQVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVKS  264 (960)
T ss_dssp             HHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTHHHHHHHHHHHHSCCSCCCC------CCCHHHHHHH
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHcCCCCcccCCcccccccHHHHHHH
Confidence                32211 1       123334666666655432 2111112244556666666421      1         24677


Q ss_pred             HHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcC-----CCCcchHhHHHHHHhHhhcCCchhhHHHhh-CCChHH----
Q 011328          219 DACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR-----HPSPSVLIPALRTVGNIVTGDDMQTQCIIN-HQALPC----  288 (488)
Q Consensus       219 ~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~-----~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~~~~----  288 (488)
                      .++.++..+....++.....+. .+++.....+.     ..++.++..++..+..++.... .. .+++ ...++.    
T Consensus       265 ~~~~~l~~l~~~~~~~f~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~~~-~~-~~~~~~~~l~~li~~  341 (960)
T 1wa5_C          265 SIQELVQLYTTRYEDVFGPMIN-EFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIPK-YF-EIFNNESAMNNITEQ  341 (960)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHH-HHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSHH-HH-GGGCSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCcHh-HH-HHHcCchHHHHHHHH
Confidence            8888888887655443332222 44555555553     2456788888888888775322 11 1111 122222    


Q ss_pred             -HHHHhcc----------------------cchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh------cC
Q 011328          289 -LLDLLTQ----------------------NYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLL------NA  339 (488)
Q Consensus       289 -L~~lL~~----------------------~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~------~~  339 (488)
                       ++..+.-                      ......|..|..+|..++...++..   +. .+++.+...+.      +.
T Consensus       342 ~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~~~v---~~-~~l~~i~~~l~~~~~~~~~  417 (960)
T 1wa5_C          342 IILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNEVLV---TN-IFLAHMKGFVDQYMSDPSK  417 (960)
T ss_dssp             THHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCHHHH---HH-HHHHHHHHHHHHHHC----
T ss_pred             HhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcchhH---HH-HHHHHHHHHHHHhccCcch
Confidence             2233210                      1022567788888888877433322   11 13344444454      45


Q ss_pred             ChhHHHHHHHHHHHhccCCC-HH----------HHHHHHHCCChHHHHhhcCCC---CHHHHHHHHHHHHHHHHhhhhhh
Q 011328          340 EFEIKKEAAWAISNATSGGS-NE----------QIKFLVSQGCIKPLCDLLNCP---DPRIVTVCLEGLENILKAGEAEK  405 (488)
Q Consensus       340 ~~~v~~~a~~aL~~l~~~~~-~~----------~~~~l~~~~~i~~L~~ll~~~---~~~v~~~al~~L~~l~~~~~~~~  405 (488)
                      ++..|+.|+.+++.++..+. .+          ....+...-+++    .+.++   ++.++..++++++++...-.   
T Consensus       418 ~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p----~l~~~~~~~p~vr~~a~~~lg~~~~~~~---  490 (960)
T 1wa5_C          418 NWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAP----DLTSNNIPHIILRVDAIKYIYTFRNQLT---  490 (960)
T ss_dssp             CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHH----HHHCSSCSCHHHHHHHHHHHHHTGGGSC---
T ss_pred             hHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHH----HhcCCCCCCceehHHHHHHHHHHHhhCC---
Confidence            77899999999999975421 00          111111111222    23444   78999999999998865421   


Q ss_pred             ccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCCC
Q 011328          406 NMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVEE  455 (488)
Q Consensus       406 ~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~  455 (488)
                                 .+.+..  .++.+...+.++++.|+..|...+.++.+..
T Consensus       491 -----------~~~l~~--~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~  527 (960)
T 1wa5_C          491 -----------KAQLIE--LMPILATFLQTDEYVVYTYAAITIEKILTIR  527 (960)
T ss_dssp             -----------HHHHHH--HHHHHHHHTTCSCHHHHHHHHHHHHHHTTCB
T ss_pred             -----------HHHHHH--HHHHHHHHhCCCChhHHHHHHHHHHHHHhcc
Confidence                       112221  2455666667778999999999999998753

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=98.55  E-value=2.1e-05  Score=84.35  Aligned_cols=344  Identities=10%  Similarity=0.038  Sum_probs=198.9

Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCC------ch
Q 011328           34 AMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGT------SE  107 (488)
Q Consensus        34 ~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~------~~  107 (488)
                      .+++.+.+++..++...+.++..++..+-+.     -..++++.|++++++++ +..+..++.++..++...      ++
T Consensus        89 ~ll~~l~~~~~~ir~~l~~~ia~ia~~d~p~-----~Wp~ll~~L~~~l~s~~-~~~~~~aL~~l~~i~~~~~~~~~~~~  162 (960)
T 1wa5_C           89 EIVPLMISLPNNLQVQIGEAISSIADSDFPD-----RWPTLLSDLASRLSNDD-MVTNKGVLTVAHSIFKRWRPLFRSDE  162 (960)
T ss_dssp             HHHHHHHHSCHHHHHHHHHHHHHHHHHHSTT-----TCTTHHHHHHTTCCSSC-TTHHHHHHHHHHHHHGGGTTSCCCHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHHHhhCcc-----chhHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHHHHhhcChH
Confidence            5677777677889999999999988753111     12468899999998887 788999999999998722      12


Q ss_pred             hhHHHH--hCCCHHHHHH-------hhCCCCH---------HHHHHHHHHHhhhhC-CCchhH-HHHHhcCChHHHHHHh
Q 011328          108 NTRVVI--DHGAVPIFVR-------LLSSPTD---------DVREQAVWALGNVAG-DSPKCR-DLVLSNGALMPLLAQF  167 (488)
Q Consensus       108 ~~~~~~--~~g~i~~L~~-------~L~~~~~---------~v~~~a~~~L~~l~~-~~~~~~-~~~~~~~~l~~L~~ll  167 (488)
                      .+..+.  -....+.++.       .+.+...         ++...++.+++.+.. +.+..- ..+.  ..++.+...+
T Consensus       163 ~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~~~~--~~~~~~~~~l  240 (960)
T 1wa5_C          163 LFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNIQ--VGMGIFHKYL  240 (960)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTHH--HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHH--HHHHHHHHHH
Confidence            222110  0112333333       2443211         233346666666643 222211 1111  1223334444


Q ss_pred             ccc-----cc---------HhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhc-----cCChhHHHHHHHHHHHhc
Q 011328          168 NEH-----AK---------LSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH-----SNDDEVLTDACWALSYLS  228 (488)
Q Consensus       168 ~~~-----~~---------~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~-----~~~~~v~~~al~~L~~l~  228 (488)
                      ...     .+         ..++..++.++..+....+..-......+++.+...+.     ..++.++..++..+..++
T Consensus       241 ~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~  320 (960)
T 1wa5_C          241 SYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVT  320 (960)
T ss_dssp             SCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHH
T ss_pred             cCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHh
Confidence            210     11         24677888888887754322111233455666666664     236788899999998887


Q ss_pred             cCCchh--HH--HHHHhCCH-HHHHHhcC-----------------------CCCcchHhHHHHHHhHhhcCCchhhHHH
Q 011328          229 DGTNDK--IQ--AVIEAGVC-PRLVELLR-----------------------HPSPSVLIPALRTVGNIVTGDDMQTQCI  280 (488)
Q Consensus       229 ~~~~~~--~~--~~~~~~~l-~~L~~lL~-----------------------~~~~~v~~~a~~~L~~l~~~~~~~~~~~  280 (488)
                      ......  .+  .++. .++ +.++..+.                       +.....|..|..+|..++...+.   .+
T Consensus       321 ~~~~~~~~~~~~~~l~-~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~~---~v  396 (960)
T 1wa5_C          321 RIPKYFEIFNNESAMN-NITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNEV---LV  396 (960)
T ss_dssp             TSHHHHGGGCSHHHHH-HHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCHH---HH
T ss_pred             CcHhHHHHHcCchHHH-HHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcch---hH
Confidence            543211  00  1111 222 22333321                       11125677888888888775442   12


Q ss_pred             hhCCChHHHHHHhc------ccchhhHHHHHHHHHHHHhcCC--HH----------HHHHHHHcCChHHHHHHHhcC---
Q 011328          281 INHQALPCLLDLLT------QNYKKSIKKEACWTISNITAGN--VN----------QIQAIIEAGIIGPLVNLLLNA---  339 (488)
Q Consensus       281 ~~~~~~~~L~~lL~------~~~~~~v~~~a~~~L~nl~~~~--~~----------~~~~l~~~~~l~~L~~ll~~~---  339 (488)
                      +. .+++.+...+.      +. ++..|..|+.+++.++.+.  .+          ....++...+    +..+.++   
T Consensus       397 ~~-~~l~~i~~~l~~~~~~~~~-~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v----~p~l~~~~~~  470 (960)
T 1wa5_C          397 TN-IFLAHMKGFVDQYMSDPSK-NWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEI----APDLTSNNIP  470 (960)
T ss_dssp             HH-HHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHT----HHHHHCSSCS
T ss_pred             HH-HHHHHHHHHHHHhccCcch-hHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHh----HHHhcCCCCC
Confidence            11 23445555555      44 6788999999999997531  10          1222222123    3334555   


Q ss_pred             ChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHh
Q 011328          340 EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKA  400 (488)
Q Consensus       340 ~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~  400 (488)
                      ++.+|..|+|+++.++..-.++....     +++.+++.+.++++.++..|+.+|.+++..
T Consensus       471 ~p~vr~~a~~~lg~~~~~~~~~~l~~-----~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~  526 (960)
T 1wa5_C          471 HIILRVDAIKYIYTFRNQLTKAQLIE-----LMPILATFLQTDEYVVYTYAAITIEKILTI  526 (960)
T ss_dssp             CHHHHHHHHHHHHHTGGGSCHHHHHH-----HHHHHHHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred             CceehHHHHHHHHHHHhhCCHHHHHH-----HHHHHHHHhCCCChhHHHHHHHHHHHHHhc
Confidence            78899999999999987654443332     577888888888899999999999999874

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=98.53  E-value=5.1e-05  Score=81.63  Aligned_cols=397  Identities=10%  Similarity=0.066  Sum_probs=207.5

Q ss_pred             CCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHh-------hcCCCC--hhHHHHHHHHHHHhcCCCchhh---
Q 011328           42 DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEF-------LSRDDF--PQLQFEAAWALTNIASGTSENT---  109 (488)
Q Consensus        42 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~l-------L~~~~~--~~v~~~a~~~L~~l~~~~~~~~---  109 (488)
                      ++++++..|+.++..++...........+. .+++.++.+       +.+.+.  ++.....++.+..++......-   
T Consensus       256 ~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~  334 (971)
T 2x1g_F          256 DENELAESCLKTMVNIIIQPDCHNYPKTAF-VLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSG  334 (971)
T ss_dssp             HHHHHHHHHHHHHHHHHHCSGGGGCHHHHH-HHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHHcCccccccHHHHH-HHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            457888999999999987532111111111 123333332       233331  2666677777777764222110   


Q ss_pred             ---------HHHHhCCCHHHHHHhhCC-----CCHHHHHHHHHHHhhhhCC---------CchhHHHHHh--cCChHHHH
Q 011328          110 ---------RVVIDHGAVPIFVRLLSS-----PTDDVREQAVWALGNVAGD---------SPKCRDLVLS--NGALMPLL  164 (488)
Q Consensus       110 ---------~~~~~~g~i~~L~~~L~~-----~~~~v~~~a~~~L~~l~~~---------~~~~~~~~~~--~~~l~~L~  164 (488)
                               ..+.  ..++.++.+...     .++++...+++.+..++..         .+........  ...++.++
T Consensus       335 ~~~~~~~~~~~l~--~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~  412 (971)
T 2x1g_F          335 ITSADPELSILVH--RIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILV  412 (971)
T ss_dssp             HHTCCHHHHHHHH--HHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHH
T ss_pred             hccCcccccHHHH--HHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHH
Confidence                     1111  345666665533     4788899999988877541         1111111111  12344444


Q ss_pred             HHhccccc--------------HhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhcc-----CChhHHHHHHHHHH
Q 011328          165 AQFNEHAK--------------LSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHS-----NDDEVLTDACWALS  225 (488)
Q Consensus       165 ~ll~~~~~--------------~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~-----~~~~v~~~al~~L~  225 (488)
                      ..+...++              ...|..+..++..++...+   ......+++.+...+.+     .+...++.++.+++
T Consensus       413 ~~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l~~~~~~~~---~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~  489 (971)
T 2x1g_F          413 RKSEQPDEKSLAKWSSDDLECFRCYRQDISDTFMYCYDVLN---DYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQ  489 (971)
T ss_dssp             HHTSCCCTTTTSCSCHHHHHHHHHHHHHHHHHHHHHHTTCT---THHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHH
T ss_pred             HHhcCCCcccccccCHhHHHHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHH
Confidence            44421111              1345666677777665432   22333444455555543     57889999999999


Q ss_pred             HhccCCchhHHHHHHhCCHHHHHHhcC-CCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHH
Q 011328          226 YLSDGTNDKIQAVIEAGVCPRLVELLR-HPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKE  304 (488)
Q Consensus       226 ~l~~~~~~~~~~~~~~~~l~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~  304 (488)
                      .++..........+. .+++.+..+.. +.++.++..++++++.++..-....+ .+ ..+++.++..| +   +.++..
T Consensus       490 ~iae~~~~~~~~~l~-~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~-~l-~~vl~~l~~~l-~---~~v~~~  562 (971)
T 2x1g_F          490 SVAEHFGGEEKRQIP-RLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPA-YI-PPAINLLVRGL-N---SSMSAQ  562 (971)
T ss_dssp             HTTTC------CHHH-HHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC-----CH-HHHHHHHHHHH-H---SSCHHH
T ss_pred             HHHhhcChhhhHHHH-HHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHH-HH-HHHHHHHHHHh-C---hHHHHH
Confidence            998765433221111 23332222221 34788999999999998863222111 11 13455566666 2   578999


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC--ChhHHHHHHHHHHHhccCCC-HHHHHHHHH--CCChHHHHhhc
Q 011328          305 ACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA--EFEIKKEAAWAISNATSGGS-NEQIKFLVS--QGCIKPLCDLL  379 (488)
Q Consensus       305 a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~~-~~~~~~l~~--~~~i~~L~~ll  379 (488)
                      |++++.+++..........++ .++..+..++..+  +.+.+..+..+++.++.... .+...++..  ..++..+..++
T Consensus       563 A~~al~~l~~~~~~~l~p~~~-~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~  641 (971)
T 2x1g_F          563 ATLGLKELCRDCQLQLKPYAD-PLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAIC  641 (971)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHH-HHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccccHH-HHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999755554444443 4777788888874  57888999999999976432 233333222  12333343444


Q ss_pred             CCC--CHHHHHH---HHHHHHHHHHhhhhhh-ccCCCC-ccchHHHHHHhhccHHHHHHhhcC--CCHHHHHHHHHHHHH
Q 011328          380 NCP--DPRIVTV---CLEGLENILKAGEAEK-NMGNTG-GVNLFAQAIDDAEGLEKIENLQSH--DNTEIYEKAVKILET  450 (488)
Q Consensus       380 ~~~--~~~v~~~---al~~L~~l~~~~~~~~-~~~~~~-~~~~~~~~l~~~g~~~~L~~l~~~--~~~~v~~~a~~~l~~  450 (488)
                      +..  +++.+..   ++..|..++..-.... ...+.. ..+.+...+.  ..++.+..+...  .++.+.+.+..++.+
T Consensus       642 ~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~i~~~l~~~l~~~~~~~~v~e~~~~~~~~  719 (971)
T 2x1g_F          642 QADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQ--RTMPIFKRIAEMWVEEIDVLEAACSAMKH  719 (971)
T ss_dssp             TC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHHH--TTHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             hcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHH--HHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence            433  3323333   4444444443221100 000000 0011223232  346666665432  467899998888887


Q ss_pred             hcCC
Q 011328          451 YWVE  454 (488)
Q Consensus       451 ~~~~  454 (488)
                      +...
T Consensus       720 ~~~~  723 (971)
T 2x1g_F          720 AITN  723 (971)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            5443

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=98.50  E-value=4.7e-08  Score=77.68  Aligned_cols=122  Identities=18%  Similarity=0.186  Sum_probs=93.6

Q ss_pred             HcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchh
Q 011328           71 QSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC  150 (488)
Q Consensus        71 ~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~  150 (488)
                      ....++.+..+|++++ +.+|..|+++|+.+..            ..++.|+.+|+++++.+|..++++|+++..  +  
T Consensus        10 ~~~~~~~l~~~L~~~~-~~vR~~A~~~L~~~~~------------~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~--~--   72 (131)
T 1te4_A           10 HSSGLVPRGSHMADEN-KWVRRDVSTALSRMGD------------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD--E--   72 (131)
T ss_dssp             -----------CCSSC-CCSSSSCCSSTTSCSS------------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS--H--
T ss_pred             ccccHHHHHHHhcCCC-HHHHHHHHHHHHHhCc------------hHHHHHHHHHcCCCHHHHHHHHHHHHhcCC--H--
Confidence            3467888999999988 8999999999887643            126899999999999999999999999852  1  


Q ss_pred             HHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHh
Q 011328          151 RDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYL  227 (488)
Q Consensus       151 ~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l  227 (488)
                             ..++.|+..+ ++.++.++..++++|..+..          ...++.|..+++++++.++..+..+|..+
T Consensus        73 -------~a~~~L~~~L-~d~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~i  131 (131)
T 1te4_A           73 -------RAVEPLIKLL-EDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLETH  131 (131)
T ss_dssp             -------HHHHHHHHHH-HHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred             -------HHHHHHHHHH-cCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence                   1467888888 78899999999999999863          36789999999999999999999988653

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9

Probab=98.50  E-value=5.6e-05  Score=71.51  Aligned_cols=321  Identities=12%  Similarity=0.089  Sum_probs=194.8

Q ss_pred             ccHHHHHHHhc-CCCHHHHHHHHHHHHHHhccCCC---ccHHHHHHcCCH-HHHHHhhcCCCChhHHHHHHHHHHHhcCC
Q 011328           30 ESLPAMVAGVW-SDDRNIQLDATTQFRKLLSIERS---PPINEVIQSGVV-PRFIEFLSRDDFPQLQFEAAWALTNIASG  104 (488)
Q Consensus        30 ~~i~~l~~~L~-s~~~~~~~~a~~~L~~l~~~~~~---~~~~~~~~~~~i-~~L~~lL~~~~~~~v~~~a~~~L~~l~~~  104 (488)
                      .....++++|+ ..+.++....+..+..++... +   .....+.+..-. ..+.....+.+..-....+..++..++..
T Consensus        77 ~~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~-~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~~  155 (480)
T 1ho8_A           77 KTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSD-KYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQN  155 (480)
T ss_dssp             TTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCS-SSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTST
T ss_pred             hHHHHHHHHHhhcChHHHHHHHHHHHHHHHhcC-cchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHhcc
Confidence            34567888887 477888888999999988865 3   233333333222 22333222334255566777776666543


Q ss_pred             Cch---hhHHHHhCCCHHHHHHhhCC-CCHHHHHHHHHHHhhhhCCCchhHHHHHhcC--ChHHHHHHhccc--------
Q 011328          105 TSE---NTRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSNG--ALMPLLAQFNEH--------  170 (488)
Q Consensus       105 ~~~---~~~~~~~~g~i~~L~~~L~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~--~l~~L~~ll~~~--------  170 (488)
                      ++.   ....++...   -++..|.+ .+...+..++.+|..+.... ..|..+.+.+  .+++++..+...        
T Consensus       156 ~~~~~~~l~~l~~~~---~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~-~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~  231 (480)
T 1ho8_A          156 GLHNVKLVEKLLKNN---NLINILQNIEQMDTCYVCIRLLQELAVIP-EYRDVIWLHEKKFMPTLFKILQRATDSQLATR  231 (480)
T ss_dssp             TTCCHHHHHHHHHCH---HHHHHHHCTTCHHHHHHHHHHHHHHHTSH-HHHHHHHTTHHHHHHHHHHHHHHHHC------
T ss_pred             CCccHhHHHHHhhhH---HHHHHhccccCCchHHHHHHHHHHHhcch-hHHHHHHHcccchhHHHHHHHHHhhccccccc
Confidence            322   112222111   34444544 34555677888888888654 4677766543  355565444211        


Q ss_pred             --------ccHhHHHHHHHHHHHhhcCCCCCChhhhhch--HHHHHHhhcc-CChhHHHHHHHHHHHhccCCch----hH
Q 011328          171 --------AKLSMLRNATWTLSNFCRGKPQPLFEQTRPA--LPALERLIHS-NDDEVLTDACWALSYLSDGTND----KI  235 (488)
Q Consensus       171 --------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~--~~~l~~ll~~-~~~~v~~~al~~L~~l~~~~~~----~~  235 (488)
                              ...+++..++.+++-++...+........++  ++.++..++. ..+++..-++.++.|+....+.    ..
T Consensus       232 ~~~~~~~~~~~Ql~Y~~ll~iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~  311 (480)
T 1ho8_A          232 IVATNSNHLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVI  311 (480)
T ss_dssp             -------CCHHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHH
T ss_pred             cccccCCCccHHHHHHHHHHHHHHHcCHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHH
Confidence                    1356788999999999877532222222222  2556666664 5799999999999999976531    11


Q ss_pred             H-HHHHhCCHHHHHHhcCC---CCcchHhHHHHHHhH-------hhc--------------CCchhhH---------HHh
Q 011328          236 Q-AVIEAGVCPRLVELLRH---PSPSVLIPALRTVGN-------IVT--------------GDDMQTQ---------CII  281 (488)
Q Consensus       236 ~-~~~~~~~l~~L~~lL~~---~~~~v~~~a~~~L~~-------l~~--------------~~~~~~~---------~~~  281 (488)
                      . .++..++++ +++.|..   .++++....-.....       ++.              -+|....         .+.
T Consensus       312 ~~~~~~~~~l~-~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~  390 (480)
T 1ho8_A          312 KQLLLLGNALP-TVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFK  390 (480)
T ss_dssp             HHHHHHHCHHH-HHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGS
T ss_pred             HHHHHHccchH-HHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHH
Confidence            2 233334544 4444433   344444332211111       111              0121111         111


Q ss_pred             --hCCChHHHHHHhcc---------cchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHH
Q 011328          282 --NHQALPCLLDLLTQ---------NYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWA  350 (488)
Q Consensus       282 --~~~~~~~L~~lL~~---------~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~a  350 (488)
                        +..++..|.++|++         +.++.+..-||.=++.++.+.|..+..+-+.|+=..+++++.++|++||.+|+.|
T Consensus       391 e~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~a  470 (480)
T 1ho8_A          391 KDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKA  470 (480)
T ss_dssp             SGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHH
T ss_pred             hcchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHH
Confidence              22467889999974         2378888899999999999778877777788999999999999999999999999


Q ss_pred             HHHhcc
Q 011328          351 ISNATS  356 (488)
Q Consensus       351 L~~l~~  356 (488)
                      +..+..
T Consensus       471 vQklm~  476 (480)
T 1ho8_A          471 TQAIIG  476 (480)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            988764

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=98.43  E-value=4e-08  Score=78.06  Aligned_cols=120  Identities=17%  Similarity=0.166  Sum_probs=91.4

Q ss_pred             hCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHH
Q 011328          241 AGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQI  320 (488)
Q Consensus       241 ~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~  320 (488)
                      ...++.+...|+++++.+|..|+++|+.+..            ..++.|+..|+++ ++.+|..|+++|+++..  +.  
T Consensus        11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~------------~~~~~L~~~L~d~-~~~vR~~A~~aL~~~~~--~~--   73 (131)
T 1te4_A           11 SSGLVPRGSHMADENKWVRRDVSTALSRMGD------------EAFEPLLESLSNE-DWRIRGAAAWIIGNFQD--ER--   73 (131)
T ss_dssp             ----------CCSSCCCSSSSCCSSTTSCSS------------TTHHHHHHGGGCS-CHHHHHHHHHHHGGGCS--HH--
T ss_pred             cccHHHHHHHhcCCCHHHHHHHHHHHHHhCc------------hHHHHHHHHHcCC-CHHHHHHHHHHHHhcCC--HH--
Confidence            3667889999999999999999998887642            1258899999988 99999999999998853  22  


Q ss_pred             HHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHH
Q 011328          321 QAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLEN  396 (488)
Q Consensus       321 ~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~  396 (488)
                             .++.|+..+.++++.||..|+++|+++..   ++         .++.|..+++++++.++..+..+|.+
T Consensus        74 -------a~~~L~~~L~d~~~~VR~~A~~aL~~~~~---~~---------a~~~L~~~l~d~~~~vr~~A~~aL~~  130 (131)
T 1te4_A           74 -------AVEPLIKLLEDDSGFVRSGAARSLEQIGG---ER---------VRAAMEKLAETGTGFARKVAVNYLET  130 (131)
T ss_dssp             -------HHHHHHHHHHHCCTHHHHHHHHHHHHHCS---HH---------HHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred             -------HHHHHHHHHcCCCHHHHHHHHHHHHHhCc---HH---------HHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence                   47888899999999999999999999852   22         46778888899999999999988764

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=98.35  E-value=4.6e-05  Score=79.53  Aligned_cols=304  Identities=15%  Similarity=0.118  Sum_probs=205.7

Q ss_pred             HHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCC--CChhhh
Q 011328          121 FVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQ--PLFEQT  198 (488)
Q Consensus       121 L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~--~~~~~~  198 (488)
                      +.+.+...+..-+..++..+..+........  ....+.+..+.+.+.+..+.   +.|+.++..++.....  ......
T Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~k~~~---~~a~~~~~~~~~~~~~~~~~e~~~   93 (986)
T 2iw3_A           19 LFQKLSVATADNRHEIASEVASFLNGNIIEH--DVPEHFFGELAKGIKDKKTA---ANAMQAVAHIANQSNLSPSVEPYI   93 (986)
T ss_dssp             HHHHHTTCCTTTHHHHHHHHHHHHTSSCSSS--SCCHHHHHHHHHHHTSHHHH---HHHHHHHHHHTCTTTCCTTTHHHH
T ss_pred             HHhhccccchhHHHHHHHHHHHHHhcccccc--ccchhHHHHHHHHHhccCCH---HHHHHHHHHHHHhcCCCCCcccch
Confidence            4444443333334555666666654321111  11124566677777333333   8999999999966522  333444


Q ss_pred             hchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCC-CcchHhHHHHHHhHhhcCCchhh
Q 011328          199 RPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP-SPSVLIPALRTVGNIVTGDDMQT  277 (488)
Q Consensus       199 ~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~  277 (488)
                      -+.+|.++....+....|+..|-.++..+...-+...-    ..+++.|+..|.+. .++.+..|+.++..++...+...
T Consensus        94 ~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~  169 (986)
T 2iw3_A           94 VQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI----KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQV  169 (986)
T ss_dssp             HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHH
T ss_pred             HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH----HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHH
Confidence            56788888888888899999988888887754333211    25678888888654 68999999999999997655444


Q ss_pred             HHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhc--CCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhc
Q 011328          278 QCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA--GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNAT  355 (488)
Q Consensus       278 ~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~--~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~  355 (488)
                      ...+. .++|.+...+.+. .++|+..|..++..++.  ++.+.      ..++|.|++.+.+++.  ..++...|+..+
T Consensus       170 ~~~~~-~~~p~~~~~~~d~-k~~v~~~~~~~~~~~~~~~~n~d~------~~~~~~~~~~~~~p~~--~~~~~~~l~~~t  239 (986)
T 2iw3_A          170 ALRMP-ELIPVLSETMWDT-KKEVKAAATAAMTKATETVDNKDI------ERFIPSLIQCIADPTE--VPETVHLLGATT  239 (986)
T ss_dssp             HHHHH-HHHHHHHHHTTCS-SHHHHHHHHHHHHHHGGGCCCTTT------GGGHHHHHHHHHCTTH--HHHHHHHHTTCC
T ss_pred             HHhcc-chhcchHhhcccC-cHHHHHHHHHHHHHHHhcCCCcch------hhhHHHHHHHhcChhh--hHHHHHHhhcCe
Confidence            33333 5788888888888 89999999999998887  44442      2479999999998843  456677777666


Q ss_pred             cCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHh-hc
Q 011328          356 SGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENL-QS  434 (488)
Q Consensus       356 ~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l-~~  434 (488)
                      .....+ ...|.=  .++.|.+-|......+...+.-.+.|+++.-+....         ....+  -..++.+++. ..
T Consensus       240 fv~~v~-~~~l~~--~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~---------~~~f~--~~l~p~~~~~~~~  305 (986)
T 2iw3_A          240 FVAEVT-PATLSI--MVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQV---------IAPFL--GKLLPGLKSNFAT  305 (986)
T ss_dssp             CCSCCC-HHHHHH--HHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHH---------HHHHH--TTTHHHHHHHTTT
T ss_pred             eEeeec-chhHHH--HHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHH---------Hhhhh--hhhhhHHHHHhhc
Confidence            544211 122211  478888899988888999999999999987665432         22222  2246777775 45


Q ss_pred             CCCHHHHHHHHHHHHHhcCCCCC
Q 011328          435 HDNTEIYEKAVKILETYWVEEDE  457 (488)
Q Consensus       435 ~~~~~v~~~a~~~l~~~~~~~~~  457 (488)
                      -.+||+++.|.+.+..+......
T Consensus       306 ~~~pe~r~~~~~a~~~l~~~~~~  328 (986)
T 2iw3_A          306 IADPEAREVTLRALKTLRRVGNV  328 (986)
T ss_dssp             CCSHHHHHHHHHHHHHHHHHHTC
T ss_pred             cCCHHHHHHHHHHHHHHHHhhcc
Confidence            57999999999999988777555

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=98.26  E-value=0.00041  Score=74.58  Aligned_cols=402  Identities=13%  Similarity=0.108  Sum_probs=209.4

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCcc-HHHH---HH--cCCHHHHHHhhcCCCChhHHHHHHHHHHHhcC
Q 011328           30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPP-INEV---IQ--SGVVPRFIEFLSRDDFPQLQFEAAWALTNIAS  103 (488)
Q Consensus        30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~-~~~~---~~--~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~  103 (488)
                      ..++.+++.+.  +++++..|+.++..+++...... ...+   ..  -+..+.+...+...+ .+.....++.+..++.
T Consensus       241 ~ll~~l~~~l~--~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d-~~~~~~~~~l~~~~~~  317 (963)
T 2x19_B          241 ALIQAAFAALQ--DSELFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGD-METSHGICRIAVALGE  317 (963)
T ss_dssp             HHHHHHHHHTT--STTTHHHHHHHHHHHHTCTTGGGCHHHHHHHHHHHHTTHHHHHHHHHTTC-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhC--CchHHHHHHHHHHHHHcccccccCHHHHHHHHHHHHhhHHHHHHHHHCCC-HHHHHHHHHHHHHHHH
Confidence            45666666663  56788899999999987542111 1111   11  112222222334445 5556666677766654


Q ss_pred             CCchh-------hHHHHhCCCHHHHHHhhCC-----CCHHHHHHHHHHHhhhhCCC--------chhHHHHHh--cCChH
Q 011328          104 GTSEN-------TRVVIDHGAVPIFVRLLSS-----PTDDVREQAVWALGNVAGDS--------PKCRDLVLS--NGALM  161 (488)
Q Consensus       104 ~~~~~-------~~~~~~~g~i~~L~~~L~~-----~~~~v~~~a~~~L~~l~~~~--------~~~~~~~~~--~~~l~  161 (488)
                      ..+..       ...+.  .+++.++.+...     .++++...++..+..++...        +........  ...++
T Consensus       318 ~~~~~l~~~~~~~~~~~--~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~  395 (963)
T 2x19_B          318 NHSRALLDQVEHWQSFL--ALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVD  395 (963)
T ss_dssp             HHHHHHHHCGGGHHHHH--HHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhHHHHHcCccchHHHH--HHHHHHHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHH
Confidence            21111       11111  345666665554     34556666666666665411        111111110  01233


Q ss_pred             HHHHHhccccc--------------HhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhh----ccCChhHHHHHHHH
Q 011328          162 PLLAQFNEHAK--------------LSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLI----HSNDDEVLTDACWA  223 (488)
Q Consensus       162 ~L~~ll~~~~~--------------~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll----~~~~~~v~~~al~~  223 (488)
                      .++..+...++              ...+..+..+|..++...+   ......+.+.+...+    .+.++..++.++++
T Consensus       396 ~ll~~~~~p~~~~~~~~~~de~~~~~~~r~~~~~~L~~~~~~~~---~~~l~~~~~~l~~~l~~~~~~~~w~~~eaal~a  472 (963)
T 2x19_B          396 VLLHKAQFPSDEEYGFWSSDEKEQFRIYRVDISDTLMYVYEMLG---AELLSNLYDKLGRLLTSSEEPYSWQHTEALLYG  472 (963)
T ss_dssp             HHHHHHSCCCHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHT---HHHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHH
T ss_pred             HHHHHHcCCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHHcc---HHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence            34444421111              0224455555655553211   112233444444555    45678899999999


Q ss_pred             HHHhccCCchhHHHHHHhCCHHHHHHhc---CCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhh
Q 011328          224 LSYLSDGTNDKIQAVIEAGVCPRLVELL---RHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKS  300 (488)
Q Consensus       224 L~~l~~~~~~~~~~~~~~~~l~~L~~lL---~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~  300 (488)
                      ++.++........     ..++.++..+   .++++.++..++++++.++..-.... ..+ ..+++.++..|.+   +.
T Consensus       473 l~~i~~~~~~~~~-----~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~-~~l-~~vl~~l~~~l~~---~~  542 (963)
T 2x19_B          473 FQSIAETIDVNYS-----DVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHP-VMI-NSVLPLVLHALGN---PE  542 (963)
T ss_dssp             HHHHTTSCCSSCC-----SHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCH-HHH-TTTHHHHHHHTTC---GG
T ss_pred             HHHHHhhcCchhh-----HHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCH-HHH-HHHHHHHHHHhCC---ch
Confidence            9999976443211     2223333332   33567899999999999886422222 222 3688888888854   67


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC--ChhHHHHHHHHHHHhccCCC-HHHHHHHHHCCChHHHHh
Q 011328          301 IKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA--EFEIKKEAAWAISNATSGGS-NEQIKFLVSQGCIKPLCD  377 (488)
Q Consensus       301 v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~~-~~~~~~l~~~~~i~~L~~  377 (488)
                      ++..|++++.+++....+.....++ .++..+..++..+  +.+.+..+..+++.++.... .+..+++.  .+++.+..
T Consensus       543 V~~~A~~al~~l~~~~~~~l~p~~~-~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~--~l~~~l~~  619 (963)
T 2x19_B          543 LSVSSVSTLKKICRECKYDLPPYAA-NIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNLH--SLISPYIQ  619 (963)
T ss_dssp             GHHHHHHHHHHHHHHTGGGCTTTHH-HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHHH--HHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHH-HHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHH--HHHHHHHH
Confidence            9999999999998633322211121 2455566666653  56788999999999986544 33333322  24444444


Q ss_pred             hc----CC-CCHHHHH---HHHHHHHHHHHhhhhhhccC-C----------CCccchHHHHHHhhccHHHHHHhh--cCC
Q 011328          378 LL----NC-PDPRIVT---VCLEGLENILKAGEAEKNMG-N----------TGGVNLFAQAIDDAEGLEKIENLQ--SHD  436 (488)
Q Consensus       378 ll----~~-~~~~v~~---~al~~L~~l~~~~~~~~~~~-~----------~~~~~~~~~~l~~~g~~~~L~~l~--~~~  436 (488)
                      .+    +. .+++.+.   ..+++|..++..-....... .          .....++...+.+  .++.+..++  ...
T Consensus       620 ~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~  697 (963)
T 2x19_B          620 QLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQ--VFQLIQKVLSKWLN  697 (963)
T ss_dssp             HHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHHH--HHHHHHHHHHHHTT
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHH--HHHHHHHHHHhccC
Confidence            33    22 2444443   45566666655422110000 0          0011223333332  244444443  234


Q ss_pred             CHHHHHHHHHHHHHhcCC
Q 011328          437 NTEIYEKAVKILETYWVE  454 (488)
Q Consensus       437 ~~~v~~~a~~~l~~~~~~  454 (488)
                      +.++.+.+..++.++...
T Consensus       698 ~~~v~e~~~~~l~~~~~~  715 (963)
T 2x19_B          698 DAQVVEAVCAIFEKSVKT  715 (963)
T ss_dssp             CHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHh
Confidence            678888888888886543

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=98.22  E-value=3e-05  Score=83.42  Aligned_cols=337  Identities=9%  Similarity=0.045  Sum_probs=180.7

Q ss_pred             CCHHHHHHHHHHHHHHhccC-------CCccHHHHH---HcCCHHHHHHhhcCCCC-------h-------hHHHHHHHH
Q 011328           42 DDRNIQLDATTQFRKLLSIE-------RSPPINEVI---QSGVVPRFIEFLSRDDF-------P-------QLQFEAAWA   97 (488)
Q Consensus        42 ~~~~~~~~a~~~L~~l~~~~-------~~~~~~~~~---~~~~i~~L~~lL~~~~~-------~-------~v~~~a~~~   97 (488)
                      .++.+...++..+..++...       +........   -..+++.++..+..++.       +       ..|..+..+
T Consensus       365 ~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~  444 (971)
T 2x1g_F          365 VEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRCYRQDISDT  444 (971)
T ss_dssp             TTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHHHHHHHHHH
T ss_pred             cchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCHhHHHHHHHHHHHHHHH
Confidence            46777888888877764410       011111111   12345555555533221       1       355666677


Q ss_pred             HHHhcCCCc-hhhHHHHhCCCHHHHHHhhCC-----CCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHh---c
Q 011328           98 LTNIASGTS-ENTRVVIDHGAVPIFVRLLSS-----PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQF---N  168 (488)
Q Consensus        98 L~~l~~~~~-~~~~~~~~~g~i~~L~~~L~~-----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll---~  168 (488)
                      +..++...+ ..-..+     ++.+...+.+     .+...++.++.+++.++.......     ...++.++..+   .
T Consensus       445 l~~~~~~~~~~~l~~~-----~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~-----~~~l~~l~~~l~~l~  514 (971)
T 2x1g_F          445 FMYCYDVLNDYILEIL-----AAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEE-----KRQIPRLMRVLAEIP  514 (971)
T ss_dssp             HHHHHTTCTTHHHHHH-----HHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC-----------CHHHHHHHHHHHSC
T ss_pred             HHHHHHHHhHHHHHHH-----HHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhh-----hHHHHHHHHHHHhcC
Confidence            777665332 111111     2333333332     577899999999999987644211     12334444333   2


Q ss_pred             c-cccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHH
Q 011328          169 E-HAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRL  247 (488)
Q Consensus       169 ~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L  247 (488)
                      . +.++.++..++|+++.++..-.. .......+++.++..+ +  +.++..|+.++.++++.........++ .++..+
T Consensus       515 ~~d~~~~vr~~a~~~l~~~~~~l~~-~~~~l~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~~~l~p~~~-~ll~~l  589 (971)
T 2x1g_F          515 YEKLNVKLLGTALETMGSYCNWLME-NPAYIPPAINLLVRGL-N--SSMSAQATLGLKELCRDCQLQLKPYAD-PLLNAC  589 (971)
T ss_dssp             TTTSCHHHHHHHHHHHHHTHHHHC-----CHHHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCHHHHHHHHH-HHHHHH
T ss_pred             ccccCHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHHHHhccccHH-HHHHHH
Confidence            1 34788999999999999865321 1245667888888888 3  789999999999999655443333332 566777


Q ss_pred             HHhcCCC--CcchHhHHHHHHhHhhcCCc-hhhHHHhhCCChHHHHH----Hhcccc-hhhHHHHHHHHHHHHh---c--
Q 011328          248 VELLRHP--SPSVLIPALRTVGNIVTGDD-MQTQCIINHQALPCLLD----LLTQNY-KKSIKKEACWTISNIT---A--  314 (488)
Q Consensus       248 ~~lL~~~--~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~~~~L~~----lL~~~~-~~~v~~~a~~~L~nl~---~--  314 (488)
                      ..++..+  +...+..++.+++.++...+ ......++ .+++.++.    +++... +.+.+......+..++   .  
T Consensus       590 ~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~-~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l  668 (971)
T 2x1g_F          590 HASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLD-IIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSL  668 (971)
T ss_dssp             HHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHH-HHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHH-HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhc
Confidence            7777763  46788888999998876432 22222222 23333333    333221 1222333333443333   2  


Q ss_pred             CC-----------HHHHHHHHHcCChHHHHHHHhcC--ChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCC
Q 011328          315 GN-----------VNQIQAIIEAGIIGPLVNLLLNA--EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNC  381 (488)
Q Consensus       315 ~~-----------~~~~~~l~~~~~l~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~  381 (488)
                      ..           ++....+ ...+++.+..++...  +..+.+.++++++.++..-..+...++-  ..++.|...+..
T Consensus       669 ~~~~~~~~~~~~~~~~~~~~-~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~~~p~l~--~~~~~l~~~~~~  745 (971)
T 2x1g_F          669 NTDVDEQATDQPIVQPVLLV-MQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNLRSSFQPMLQ--DLCLFIVASFQT  745 (971)
T ss_dssp             TC-------------CCHHH-HHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC--CTHHH--HHHHHHHHHCC-
T ss_pred             CCCcCcccccccCCCchHHH-HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhhccccHH--HHHHHHHHHHhc
Confidence            11           1111222 245888888888653  6789999999999976432112222211  234555555554


Q ss_pred             CCHHHHHHHHHHHHHHHHh
Q 011328          382 PDPRIVTVCLEGLENILKA  400 (488)
Q Consensus       382 ~~~~v~~~al~~L~~l~~~  400 (488)
                      ...   ..+++.+..++..
T Consensus       746 ~~~---~~~l~l~~~~i~~  761 (971)
T 2x1g_F          746 RCC---APTLEISKTAIVM  761 (971)
T ss_dssp             -CC---HHHHHHHHHHHTT
T ss_pred             CCc---hHHHHHHHHHHHH
Confidence            322   2356666666553

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=98.22  E-value=2.7e-05  Score=69.93  Aligned_cols=187  Identities=15%  Similarity=0.102  Sum_probs=138.0

Q ss_pred             HHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHh
Q 011328          202 LPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCII  281 (488)
Q Consensus       202 ~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~  281 (488)
                      +..+++-|.+.+......++.-|..+...+.+....+++.+++..|+......+...+..++.++.++..+....-..+-
T Consensus       120 a~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs  199 (339)
T 3dad_A          120 VNAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVA  199 (339)
T ss_dssp             HHHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHH
T ss_pred             HHHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhC
Confidence            34556667778888899999999996666667888899999999999999999999999999999999885433222222


Q ss_pred             hCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHH--------c--CChHHHHHHHh---cCChhHHHHHH
Q 011328          282 NHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIE--------A--GIIGPLVNLLL---NAEFEIKKEAA  348 (488)
Q Consensus       282 ~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~--------~--~~l~~L~~ll~---~~~~~v~~~a~  348 (488)
                      ...++..+..++.+. +..|.+.|+..|..++..++.....+.+        .  ..+..|+.+|+   +.|.+++.+|.
T Consensus       200 ~~~fI~~lyslv~s~-~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~am  278 (339)
T 3dad_A          200 HSDTIQWLYTLCASL-SRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTV  278 (339)
T ss_dssp             CHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHH
T ss_pred             CHHHHHHHHHHHcCc-cHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHH
Confidence            557889999999976 8999999999999998754433322221        1  24889999997   66899999999


Q ss_pred             HHHHHhccCCC-HH----HHHHHHHCCChHHHHhhcCCC--CHHHHHH
Q 011328          349 WAISNATSGGS-NE----QIKFLVSQGCIKPLCDLLNCP--DPRIVTV  389 (488)
Q Consensus       349 ~aL~~l~~~~~-~~----~~~~l~~~~~i~~L~~ll~~~--~~~v~~~  389 (488)
                      ..+..+....+ .+    ....+-+.|.-..+.+.++..  +++++.+
T Consensus       279 tLIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~Q  326 (339)
T 3dad_A          279 TLINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTAGTDVDLRTQ  326 (339)
T ss_dssp             HHHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHHH
T ss_pred             HHHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhccCCCHHHHHH
Confidence            88888776543 22    344455556556666666654  5565544

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=98.19  E-value=0.00062  Score=72.65  Aligned_cols=340  Identities=12%  Similarity=0.088  Sum_probs=183.7

Q ss_pred             CCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHH-HhhcCCCChhHHHHHHHHHHHhcCC-C--c--hhhHHHHh
Q 011328           41 SDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFI-EFLSRDDFPQLQFEAAWALTNIASG-T--S--ENTRVVID  114 (488)
Q Consensus        41 s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~-~lL~~~~~~~v~~~a~~~L~~l~~~-~--~--~~~~~~~~  114 (488)
                      +.++++...++.++...++   .-....+++.+.++.++ .+|.  + ++++..|+.||..+... .  +  +....+..
T Consensus       206 ~~~~~l~~~~L~~l~s~l~---WI~i~~i~~~~ll~~l~~~~L~--~-~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~  279 (1023)
T 4hat_C          206 GASSSLIVATLESLLRYLH---WIPYRYIYETNILELLSTKFMT--S-PDTRAITLKCLTEVSNLKIPQDNDLIKRQTVL  279 (1023)
T ss_dssp             CSSCHHHHHHHHHHHHHTT---TSCTHHHHSSSHHHHHHTHHHH--S-HHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHH---hCCHHHhcchhHHHHHHHHHcC--C-HHHHHHHHHHHHHHHccccCCchHHHHHHHHH
Confidence            4567777788888888775   34467778889999999 8885  3 78999999999999872 2  2  12211110


Q ss_pred             C--CCHHHH--------------HHhhCCCCHHHHHHHHHHHhhhhC-------CCchhHHHHHhcCChHHHHHHhcccc
Q 011328          115 H--GAVPIF--------------VRLLSSPTDDVREQAVWALGNVAG-------DSPKCRDLVLSNGALMPLLAQFNEHA  171 (488)
Q Consensus       115 ~--g~i~~L--------------~~~L~~~~~~v~~~a~~~L~~l~~-------~~~~~~~~~~~~~~l~~L~~ll~~~~  171 (488)
                      .  +.++.+              ...-..++.+.....++.+..+..       ..+..+..+.  .++..++..- ..+
T Consensus       280 lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l~--~~l~~Ll~~~-~~~  356 (1023)
T 4hat_C          280 FFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLL--NAHQYLIQLS-KIE  356 (1023)
T ss_dssp             HHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHHHH--HHHHHHHHHT-TSS
T ss_pred             HHHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHH--HHHHHHHHhh-CCC
Confidence            0  111111              111122346666666666655542       1122122211  1223344433 445


Q ss_pred             cHhHHHHHHHHHHHhhcCCC--CCChhhhh----chHHHHHHhhccCC--------------------hh-HHHHHH-HH
Q 011328          172 KLSMLRNATWTLSNFCRGKP--QPLFEQTR----PALPALERLIHSND--------------------DE-VLTDAC-WA  223 (488)
Q Consensus       172 ~~~v~~~a~~~L~~l~~~~~--~~~~~~~~----~~~~~l~~ll~~~~--------------------~~-v~~~al-~~  223 (488)
                      +.++...++..-..+.....  ........    .+++.+++.+.-+.                    .+ ...... .+
T Consensus       357 d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~Rd~  436 (1023)
T 4hat_C          357 ERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREV  436 (1023)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHHHH
Confidence            67776776665555554221  11122222    33444444433221                    00 011011 22


Q ss_pred             HHHhccCCc-hhHHHHHHhCCHHHHHHhcCC--CCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcc-----
Q 011328          224 LSYLSDGTN-DKIQAVIEAGVCPRLVELLRH--PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQ-----  295 (488)
Q Consensus       224 L~~l~~~~~-~~~~~~~~~~~l~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~-----  295 (488)
                      |..++.-.. +..+     -.++.+.+.+.+  .++..+++++++++.++.+-......-.-..+++.|+.++.+     
T Consensus       437 L~~l~~l~~~~~~~-----~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d  511 (1023)
T 4hat_C          437 LVYLTHLNVIDTEE-----IMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKD  511 (1023)
T ss_dssp             HHHHHHHCHHHHHH-----HHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHH
T ss_pred             HHHHhccCHHHHHH-----HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCc
Confidence            222221111 1111     122334444443  568899999999999998654432222222567778887764     


Q ss_pred             cchhhHHHHHHHHHHHHhc---CCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHH--------
Q 011328          296 NYKKSIKKEACWTISNITA---GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIK--------  364 (488)
Q Consensus       296 ~~~~~v~~~a~~~L~nl~~---~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~--------  364 (488)
                      + ...++..++|+++.++.   .+++...     .++..|++.+..+++.++..|++++.+++..+......        
T Consensus       512 ~-k~~v~~t~~~~lGry~~wl~~~~~~L~-----~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p  585 (1023)
T 4hat_C          512 N-KAVVASDIMYVVGQYPRFLKAHWNFLR-----TVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEP  585 (1023)
T ss_dssp             H-HHHHHHHHHHHHHTCHHHHHHCHHHHH-----HHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSC
T ss_pred             c-hHHHHHHHHHHHHHHHHHHhccHHHHH-----HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCch
Confidence            3 45567788899998876   2343322     24556777777777889999999999999754332210        


Q ss_pred             HHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhh
Q 011328          365 FLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGE  402 (488)
Q Consensus       365 ~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~~  402 (488)
                      ++-  .++..+......-+++-+..+.+++..++...+
T Consensus       586 ~~~--~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~  621 (1023)
T 4hat_C          586 FIQ--TIIRDIQKTTADLQPQQVHTFYKACGIIISEER  621 (1023)
T ss_dssp             HHH--HHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCC
T ss_pred             hHH--HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCC
Confidence            111  123333444444456666777777777776543

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=98.17  E-value=0.0027  Score=68.80  Aligned_cols=355  Identities=11%  Similarity=0.127  Sum_probs=190.1

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhc---cCCCc---c-H-----HHHHH--cCCHHHHHHhhcCCCChhHHHHHH
Q 011328           30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLS---IERSP---P-I-----NEVIQ--SGVVPRFIEFLSRDDFPQLQFEAA   95 (488)
Q Consensus        30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~---~~~~~---~-~-----~~~~~--~~~i~~L~~lL~~~~~~~v~~~a~   95 (488)
                      +.++.+++.++ .++..+..++..|..+..   ..+.+   . .     ..+..  ..+++.+..++.+..++.++..++
T Consensus       138 ~ll~~L~~~~~-~~~~~~~~~l~~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL  216 (1049)
T 3m1i_C          138 EFIPELIGSSS-SSVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATL  216 (1049)
T ss_dssp             THHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred             HHHHHHHHHHc-cChHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence            44566777776 455445455555554432   11011   0 0     11221  123444455555444478999999


Q ss_pred             HHHHHhcCCCchhhHHHHhCCCHHHHH-HhhCCCCHHHHHHHHHHHhhhhCCC--ch---hHHHHHhcCChHHHHHHh--
Q 011328           96 WALTNIASGTSENTRVVIDHGAVPIFV-RLLSSPTDDVREQAVWALGNVAGDS--PK---CRDLVLSNGALMPLLAQF--  167 (488)
Q Consensus        96 ~~L~~l~~~~~~~~~~~~~~g~i~~L~-~~L~~~~~~v~~~a~~~L~~l~~~~--~~---~~~~~~~~~~l~~L~~ll--  167 (488)
                      .++.+...-.+  ...+.+..+++.+. .++  .+++++..|+.+|..+....  +.   ....+..  .++.++..+  
T Consensus       217 ~~l~~~l~wi~--~~~~~~~~ll~~l~~~~l--~~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~--l~~~~l~~l~~  290 (1049)
T 3m1i_C          217 ESLLRYLHWIP--YRYIYETNILELLSTKFM--TSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVL--FFQNTLQQIAT  290 (1049)
T ss_dssp             HHHHHHTTTSC--THHHHSSSHHHHHHTHHH--HSHHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHH--HHHHHHHHHHH
T ss_pred             HHHHHHHhhCC--HHHHhhhhHHHHHHHHhC--CCHhHHHHHHHHHHHHHhCCCCcchhhHHHHHHH--HHHHHHHHHHH
Confidence            99988776222  23355667777777 344  37899999999999998542  21   1111111  111122211  


Q ss_pred             ---------------cccccHhHHHHHHHHHHHhhcCC------CCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHH
Q 011328          168 ---------------NEHAKLSMLRNATWTLSNFCRGK------PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSY  226 (488)
Q Consensus       168 ---------------~~~~~~~v~~~a~~~L~~l~~~~------~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~  226 (488)
                                     ..+.+.+.....+..+..+....      +.........+++.++.....++..+...++..+..
T Consensus       291 si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~d~~v~~~~lefw~~  370 (1049)
T 3m1i_C          291 SVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHN  370 (1049)
T ss_dssp             HTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred             hhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence                           01224444455555554433211      111122234567777777777788888888888877


Q ss_pred             hcc----CC--chhHHHHHHhCCHHHHHHhcCCCCc----------------------chHhHHHHHHhHhhcCCchhhH
Q 011328          227 LSD----GT--NDKIQAVIEAGVCPRLVELLRHPSP----------------------SVLIPALRTVGNIVTGDDMQTQ  278 (488)
Q Consensus       227 l~~----~~--~~~~~~~~~~~~l~~L~~lL~~~~~----------------------~v~~~a~~~L~~l~~~~~~~~~  278 (488)
                      ++.    ..  ......++. .+++.++..+..+++                      ..+..+..+|..++...+....
T Consensus       371 l~~~l~~~~~~~~~~~~~l~-~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~~l~~~~~~~~l  449 (1049)
T 3m1i_C          371 LVADLFYEPLKKHIYEEICS-QLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNVIDTE  449 (1049)
T ss_dssp             HHHHHHHSTTCGGGGHHHHH-HHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred             HHHHHHhchhHHHHHHHHHH-HHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHHHHHHHHHHHHHccCHHHHH
Confidence            765    21  112222222 345555555533210                      1122345555555532221111


Q ss_pred             HHhhCCChHHHHHHhcc-cchhhHHHHHHHHHHHHhcCCHHH-HHHHHHcCChHHHHHHHhc-----CChhHHHHHHHHH
Q 011328          279 CIINHQALPCLLDLLTQ-NYKKSIKKEACWTISNITAGNVNQ-IQAIIEAGIIGPLVNLLLN-----AEFEIKKEAAWAI  351 (488)
Q Consensus       279 ~~~~~~~~~~L~~lL~~-~~~~~v~~~a~~~L~nl~~~~~~~-~~~l~~~~~l~~L~~ll~~-----~~~~v~~~a~~aL  351 (488)
                      .    -+.+.+...+.+ ..++..+..++++++.++.+..+. ...+. ..+++.+..+...     +++.++..+++++
T Consensus       450 ~----~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l-~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~l  524 (1049)
T 3m1i_C          450 E----IMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFV-VTVIKDLLDLTVKKRGKDNKAVVASDIMYVV  524 (1049)
T ss_dssp             H----HHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHH-HHHHHHHHHHTTSSCSHHHHHHHHHHHHHHH
T ss_pred             H----HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHH-HHHHHHHHHHHhhhccccchHHHHHHHHHHH
Confidence            1    123344444442 227788999999999998742222 11211 1245555543321     2344555688999


Q ss_pred             HHhccCC--CHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhh
Q 011328          352 SNATSGG--SNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGE  402 (488)
Q Consensus       352 ~~l~~~~--~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~~  402 (488)
                      +.++..-  .++...     .+++.+.+.+.++++.++..|+.++.+++....
T Consensus       525 gry~~~~~~~~~~l~-----~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~  572 (1049)
T 3m1i_C          525 GQYPRFLKAHWNFLR-----TVILKLFEFMHETHEGVQDMACDTFIKIVQKCK  572 (1049)
T ss_dssp             HHCHHHHHHCHHHHH-----HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhHHHHHH-----HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence            9776421  222222     367788888888899999999999999998654

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=98.13  E-value=7.1e-05  Score=67.24  Aligned_cols=156  Identities=13%  Similarity=0.078  Sum_probs=124.9

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHH
Q 011328           32 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRV  111 (488)
Q Consensus        32 i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~  111 (488)
                      ...+++.|.+.+...+..++..|..+.+.+ .....+++..+++..|++.....+ .+.+..+++++.++.. .....+.
T Consensus       120 a~~iiekL~~~~~~~lr~aLfsLk~~~q~D-~~Fa~EFI~~~GL~~Li~vi~~~~-gN~q~Y~L~AL~~LM~-~v~Gm~g  196 (339)
T 3dad_A          120 VNAILEKLYSSSGPELRRSLFSLKQIFQED-KDLVPEFVHSEGLSCLIRVGAAAD-HNYQSYILRALGQLML-FVDGMLG  196 (339)
T ss_dssp             HHHHHHHHHHCCHHHHHHHHHHHHHHHHTC-TTHHHHHHHTTHHHHHHHHHTTSC-HHHHHHHHHHHHHHTT-SHHHHHH
T ss_pred             HHHHHHHHhcCCcHHHHHHHHHHHHHhhcc-hHHHHHHHHhccHHHHHHHHHhcC-hHHHHHHHHHHHHHHh-ccccccc
Confidence            456788888888888999999999977754 788999999999999999999988 8999999999999998 5555555


Q ss_pred             HH-hCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhc----------CChHHHHHHhc--ccccHhHHHH
Q 011328          112 VI-DHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSN----------GALMPLLAQFN--EHAKLSMLRN  178 (488)
Q Consensus       112 ~~-~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~----------~~l~~L~~ll~--~~~~~~v~~~  178 (488)
                      ++ ....|..+..++.+.+..+...|+.+|..++..++.....+.+.          ..+..++.+|.  .+.|.+++.+
T Consensus       197 vvs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~  276 (339)
T 3dad_A          197 VVAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVY  276 (339)
T ss_dssp             HHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHH
T ss_pred             hhCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHH
Confidence            55 44678888889988889999999999999987765433333221          13778899994  2568889998


Q ss_pred             HHHHHHHhhcCC
Q 011328          179 ATWTLSNFCRGK  190 (488)
Q Consensus       179 a~~~L~~l~~~~  190 (488)
                      +...+-.+....
T Consensus       277 amtLIN~lL~~a  288 (339)
T 3dad_A          277 TVTLINKTLAAL  288 (339)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHhcC
Confidence            888877766554

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=98.07  E-value=0.00058  Score=73.40  Aligned_cols=340  Identities=13%  Similarity=0.111  Sum_probs=188.5

Q ss_pred             cCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhh---CCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCC
Q 011328           83 SRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLL---SSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGA  159 (488)
Q Consensus        83 ~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L---~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~  159 (488)
                      .+.+ -..++.++++++.++.+..+..     ...++.++..+   .++++.++..++++++.++..-....+.  -...
T Consensus       459 ~~~~-w~~~eaal~al~~i~~~~~~~~-----~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~--l~~v  530 (963)
T 2x19_B          459 EPYS-WQHTEALLYGFQSIAETIDVNY-----SDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPVM--INSV  530 (963)
T ss_dssp             CSCC-HHHHHHHHHHHHHHTTSCCSSC-----CSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHH--HTTT
T ss_pred             CCCc-hHHHHHHHHHHHHHHhhcCchh-----hHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHH--HHHH
Confidence            4445 6789999999999998543311     12344444433   3357889999999999997532111112  2357


Q ss_pred             hHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccC--ChhHHHHHHHHHHHhccCCc-hhHH
Q 011328          160 LMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSN--DDEVLTDACWALSYLSDGTN-DKIQ  236 (488)
Q Consensus       160 l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~--~~~v~~~al~~L~~l~~~~~-~~~~  236 (488)
                      ++.++..+ .+  +.++..|++++.+++......-......++..+..++.+.  +...+..++.+++.++...+ +...
T Consensus       531 l~~l~~~l-~~--~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~  607 (963)
T 2x19_B          531 LPLVLHAL-GN--PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEIL  607 (963)
T ss_dssp             HHHHHHHT-TC--GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             HHHHHHHh-CC--chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHH
Confidence            77888887 33  7899999999999997543222234456666677777653  57888999999999886543 3333


Q ss_pred             HHHHhCCHHHHHHhc----CCC-CcchHh---HHHHHHhHhhcCCch---------------------hhHHHhhCCChH
Q 011328          237 AVIEAGVCPRLVELL----RHP-SPSVLI---PALRTVGNIVTGDDM---------------------QTQCIINHQALP  287 (488)
Q Consensus       237 ~~~~~~~l~~L~~lL----~~~-~~~v~~---~a~~~L~~l~~~~~~---------------------~~~~~~~~~~~~  287 (488)
                      ..++ .+++.+...+    ... +++.+.   ..+.+|+.+...-..                     ..-..+...+++
T Consensus       608 ~~~~-~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  686 (963)
T 2x19_B          608 KNLH-SLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQ  686 (963)
T ss_dssp             HHHH-HHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHHHHHH
T ss_pred             HHHH-HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHHHHH
Confidence            3332 3444444333    222 333333   344555554432110                     000111223555


Q ss_pred             HHHHHhccc-chhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHH----HHhcC-ChhHHHHHHHHHHHhcc--CCC
Q 011328          288 CLLDLLTQN-YKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVN----LLLNA-EFEIKKEAAWAISNATS--GGS  359 (488)
Q Consensus       288 ~L~~lL~~~-~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~----ll~~~-~~~v~~~a~~aL~~l~~--~~~  359 (488)
                      .+..++... .+..+.+.++.++..++..-.+...     ..++.++.    .+... .+    ..++.+..++.  ..+
T Consensus       687 ~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~~-----~~l~~~~~~l~~~~~~~~~~----~~l~l~~~li~~f~~~  757 (963)
T 2x19_B          687 LIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDFA-----PMVPQLCEMLGRMYSTIPQA----SALDLTRQLVHIFAHE  757 (963)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTTG-----GGHHHHHHHHHHHHHHSCCH----HHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHhccCchHHHHHHHHHHHHHHHhhccccc-----ccHHHHHHHHHHHHHcCCcc----HHHHHHHHHHHHhCCC
Confidence            555555432 1467888888888887642111111     12333333    33321 22    23344444433  221


Q ss_pred             H---HHHHHHHHCCChHHHHhhcC---CCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccch-HHHHHHhhccHHHHHHh
Q 011328          360 N---EQIKFLVSQGCIKPLCDLLN---CPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNL-FAQAIDDAEGLEKIENL  432 (488)
Q Consensus       360 ~---~~~~~l~~~~~i~~L~~ll~---~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~-~~~~l~~~g~~~~L~~l  432 (488)
                      .   .....+.+ .++.....++.   ..+++++......+..++......-..     ... +..      .++.+...
T Consensus       758 ~~~~~~~~~~l~-~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~~~~~~-----~~~~~~~------i~~~~~~~  825 (963)
T 2x19_B          758 PAHFPPIEALFL-LVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDLFLC-----ERLDVKA------VFQCAVLA  825 (963)
T ss_dssp             TTTCHHHHHHHH-HHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHCGGGGGC-----TTSCHHH------HHHHHHHH
T ss_pred             cchHHHHHHHHH-HHHHHHHHHHhhCcccCchHHHHHHHHHHHHHHhCcHHHcC-----CcccHHH------HHHHHHHH
Confidence            1   11222111 12333333333   246899999999999998776543210     000 122      13444555


Q ss_pred             hcCCCHHHHHHHHHHHHHhcCCC
Q 011328          433 QSHDNTEIYEKAVKILETYWVEE  455 (488)
Q Consensus       433 ~~~~~~~v~~~a~~~l~~~~~~~  455 (488)
                      +.+++..+...+...+.+++..-
T Consensus       826 l~~~~~~~~~~~l~~l~~l~~~~  848 (963)
T 2x19_B          826 LKFPEAPTVKASCGFFTELLPRC  848 (963)
T ss_dssp             TTCSCHHHHHHHHHHHHHHGGGT
T ss_pred             cCCCCHHHHHHHHHHHHHHHhcC
Confidence            67889999999999999988653

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=98.04  E-value=0.0014  Score=69.96  Aligned_cols=315  Identities=10%  Similarity=0.118  Sum_probs=176.5

Q ss_pred             CHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHH-HhhCCCCHHHHHHHHHHHhhhhCCC---c-
Q 011328           74 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFV-RLLSSPTDDVREQAVWALGNVAGDS---P-  148 (488)
Q Consensus        74 ~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~-~~L~~~~~~v~~~a~~~L~~l~~~~---~-  148 (488)
                      +++.+.++|.++.++++...++.++.....--  ....+++.+.++.+. .++.  +++++..|+.+|..+....   + 
T Consensus       195 I~~ll~~iL~~~~~~~l~~~~L~~l~s~l~WI--~i~~i~~~~ll~~l~~~~L~--~~~~r~~A~ecL~eIv~~~~~~~~  270 (1023)
T 4hat_C          195 IFKLCFQVLEQGASSSLIVATLESLLRYLHWI--PYRYIYETNILELLSTKFMT--SPDTRAITLKCLTEVSNLKIPQDN  270 (1023)
T ss_dssp             HHHHHHHHHHHCSSCHHHHHHHHHHHHHTTTS--CTHHHHSSSHHHHHHTHHHH--SHHHHHHHHHHHHHHHTSCCCSSC
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhC--CHHHhcchhHHHHHHHHHcC--CHHHHHHHHHHHHHHHccccCCch
Confidence            44455555655444788889999999988721  245667788999999 8884  6889999999999998632   2 


Q ss_pred             -hhHHHHHhc--CChHHH-----------HHHh--cccccHhHHHHHHHHHHHhhcCCCC----C-C-hhhhhchHHHHH
Q 011328          149 -KCRDLVLSN--GALMPL-----------LAQF--NEHAKLSMLRNATWTLSNFCRGKPQ----P-L-FEQTRPALPALE  206 (488)
Q Consensus       149 -~~~~~~~~~--~~l~~L-----------~~ll--~~~~~~~v~~~a~~~L~~l~~~~~~----~-~-~~~~~~~~~~l~  206 (488)
                       ...+.+...  +.+..+           -..+  ....|.+.....+..+..+......    . . ......++..++
T Consensus       271 ~~~~~~l~~lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l~~~l~~Ll  350 (1023)
T 4hat_C          271 DLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLI  350 (1023)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHH
Confidence             122111110  011111           1111  1233566666777777666543311    0 0 111122333555


Q ss_pred             HhhccCChhHHHHHHHHHHHhccC---C---chhHHHHHHhCCHHHHHHhcCCCCc---------ch-H--------hHH
Q 011328          207 RLIHSNDDEVLTDACWALSYLSDG---T---NDKIQAVIEAGVCPRLVELLRHPSP---------SV-L--------IPA  262 (488)
Q Consensus       207 ~ll~~~~~~v~~~al~~L~~l~~~---~---~~~~~~~~~~~~l~~L~~lL~~~~~---------~v-~--------~~a  262 (488)
                      ..-..++.++...++..-..++..   .   ......+.. .+++.++..+..+.+         +. +        ...
T Consensus       351 ~~~~~~d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~-~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~  429 (1023)
T 4hat_C          351 QLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICS-QLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQL  429 (1023)
T ss_dssp             HHTTSSCHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHH-HHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHH
T ss_pred             HhhCCCcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHH-HHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHH
Confidence            555567788877777766555531   0   111122222 355566666655430         00 0        011


Q ss_pred             H----HHHhHhhcCCchhhHHHhhCCChHHHHHHhcc-cchhhHHHHHHHHHHHHhcCC-HHHHHHHHHcCChHHHHHHH
Q 011328          263 L----RTVGNIVTGDDMQTQCIINHQALPCLLDLLTQ-NYKKSIKKEACWTISNITAGN-VNQIQAIIEAGIIGPLVNLL  336 (488)
Q Consensus       263 ~----~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~-~~~~~v~~~a~~~L~nl~~~~-~~~~~~l~~~~~l~~L~~ll  336 (488)
                      .    .+|..++.-....   +++ -+++.+...+.+ ..++..++.++|+++.++.+- ++....++. .+++.|+.++
T Consensus       430 f~~~Rd~L~~l~~l~~~~---~~~-~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~-~vi~~Ll~l~  504 (1023)
T 4hat_C          430 YKSEREVLVYLTHLNVID---TEE-IMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVV-TVIKDLLDLC  504 (1023)
T ss_dssp             HHHHHHHHHHHHHHCHHH---HHH-HHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHH-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCHHH---HHH-HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHH-HHHHHHHHhh
Confidence            1    2222222111110   000 122333333333 237899999999999999853 332333332 3788888888


Q ss_pred             hc-----CChhHHHHHHHHHHHhccCC--CHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhh
Q 011328          337 LN-----AEFEIKKEAAWAISNATSGG--SNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEA  403 (488)
Q Consensus       337 ~~-----~~~~v~~~a~~aL~~l~~~~--~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~  403 (488)
                      ..     +...++..++|+++..+..-  .++..+     .++..|.+.+.++++.+...|++++.+++..+..
T Consensus       505 ~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~-----~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~  573 (1023)
T 4hat_C          505 VKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLR-----TVILKLFEFMHETHEGVQDMACDTFIKIVQKCKY  573 (1023)
T ss_dssp             HHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHHH-----HHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTH
T ss_pred             hccccCcchHHHHHHHHHHHHHHHHHHhccHHHHH-----HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHH
Confidence            74     23446677889998876432  223222     3577788888888899999999999999986553

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=97.98  E-value=0.0019  Score=69.92  Aligned_cols=342  Identities=11%  Similarity=0.089  Sum_probs=181.4

Q ss_pred             CCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCC-chh----hHHHHh-
Q 011328           41 SDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGT-SEN----TRVVID-  114 (488)
Q Consensus        41 s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~-~~~----~~~~~~-  114 (488)
                      .+++.++..++.++...++--   ....+.+...++.+.+.+.. + ++++..|+.+|..+.... +..    ...+.. 
T Consensus       206 ~~~~~~~~~aL~~l~~~l~wi---~~~~~~~~~ll~~l~~~~l~-~-~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l  280 (1049)
T 3m1i_C          206 GSSSSLIVATLESLLRYLHWI---PYRYIYETNILELLSTKFMT-S-PDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLF  280 (1049)
T ss_dssp             CCCHHHHHHHHHHHHHHTTTS---CTHHHHSSSHHHHHHTHHHH-S-HHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHhhC---CHHHHhhhhHHHHHHHHhCC-C-HhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHH
Confidence            356788888999998876532   23445667778877743322 4 899999999999998642 111    111110 


Q ss_pred             -CCCHHHHHH-hh-------------CCCCHHHHHHHHHHHhhhhC-------CCchhHHHHHhcCChHHHHHHhccccc
Q 011328          115 -HGAVPIFVR-LL-------------SSPTDDVREQAVWALGNVAG-------DSPKCRDLVLSNGALMPLLAQFNEHAK  172 (488)
Q Consensus       115 -~g~i~~L~~-~L-------------~~~~~~v~~~a~~~L~~l~~-------~~~~~~~~~~~~~~l~~L~~ll~~~~~  172 (488)
                       .+++..+.. ++             .+.+.+.....+..+..+..       ..+..+..+  ...++.++... ...+
T Consensus       281 ~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l--~~~l~~ll~~~-~~~d  357 (1049)
T 3m1i_C          281 FQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELL--LNAHQYLIQLS-KIEE  357 (1049)
T ss_dssp             HHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHH--HHHHHHHHHHH-TSSC
T ss_pred             HHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHH--HHHHHHHHHHH-cCCc
Confidence             122222222 11             12344455555555544432       111111111  12344444444 3457


Q ss_pred             HhHHHHHHHHHHHhhc----CCCCCC--hhhhhchHHHHHHhhccCC-------------------h---hHHHHHHHHH
Q 011328          173 LSMLRNATWTLSNFCR----GKPQPL--FEQTRPALPALERLIHSND-------------------D---EVLTDACWAL  224 (488)
Q Consensus       173 ~~v~~~a~~~L~~l~~----~~~~~~--~~~~~~~~~~l~~ll~~~~-------------------~---~v~~~al~~L  224 (488)
                      ..+...++..+..++.    ......  ......+++.++..+.-++                   .   ..+..+..+|
T Consensus       358 ~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L  437 (1049)
T 3m1i_C          358 RELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVL  437 (1049)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHHHHHHHHH
Confidence            7788888877777766    321111  1223444555555443210                   0   1233445555


Q ss_pred             HHhccCCchhHHHHHHhCCHHHHHHhcC--CCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcc----cch
Q 011328          225 SYLSDGTNDKIQAVIEAGVCPRLVELLR--HPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQ----NYK  298 (488)
Q Consensus       225 ~~l~~~~~~~~~~~~~~~~l~~L~~lL~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~----~~~  298 (488)
                      ..++...+..   +.. -+.+.+...+.  ..++..++.++++++.++.........-.-..+++.+..+...    ...
T Consensus       438 ~~l~~~~~~~---~l~-~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~  513 (1049)
T 3m1i_C          438 VYLTHLNVID---TEE-IMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNK  513 (1049)
T ss_dssp             HHHHHHCHHH---HHH-HHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHH
T ss_pred             HHHHccCHHH---HHH-HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccch
Confidence            5555322211   111 12344444444  3567789999999999986543221111111344444443321    114


Q ss_pred             hhHHHHHHHHHHHHhc---CCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHH--------HHHH
Q 011328          299 KSIKKEACWTISNITA---GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQI--------KFLV  367 (488)
Q Consensus       299 ~~v~~~a~~~L~nl~~---~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~--------~~l~  367 (488)
                      +.++..++|+++.++.   ..++.    +. .+++.++..+.++++.|+..|++++.+++..+.....        .++-
T Consensus       514 ~~v~~~~~~~lgry~~~~~~~~~~----l~-~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~  588 (1049)
T 3m1i_C          514 AVVASDIMYVVGQYPRFLKAHWNF----LR-TVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQ  588 (1049)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHCHHH----HH-HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHH----HH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHH
Confidence            5566679999998875   22322    22 2567788888888899999999999999975433221        1111


Q ss_pred             HCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhh
Q 011328          368 SQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAG  401 (488)
Q Consensus       368 ~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~  401 (488)
                        .++..+..++..-+.+-.....+++..++...
T Consensus       589 --~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~  620 (1049)
T 3m1i_C          589 --TIIRDIQKTTADLQPQQVHTFYKACGIIISEE  620 (1049)
T ss_dssp             --HHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTC
T ss_pred             --HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcC
Confidence              23444444555545545566677777776543

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=97.91  E-value=0.00062  Score=72.55  Aligned_cols=417  Identities=12%  Similarity=0.109  Sum_probs=207.4

Q ss_pred             hHHHHhhcCCCCChhhHHHHhhhccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHH--HHHHcCCHHHHHHhhc-
Q 011328            7 DCFVCFSLLKPMDPMFFIIQLQLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPIN--EVIQSGVVPRFIEFLS-   83 (488)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~--~~~~~~~i~~L~~lL~-   83 (488)
                      +|+..+..-.|+..++..     +.++.+.+.|.+  ++++..|+.+|..+++.. .....  .++..=.+...+..+. 
T Consensus       215 ~~l~s~i~wi~~~~i~~~-----~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~-~~~~~k~~li~~l~L~~~~~~l~~  286 (980)
T 3ibv_A          215 QVYAQWVSWININLIVNE-----PCMNLLYSFLQI--EELRCAACETMTEIVNKK-MKPLEKLNLLNILNLNLFFSKSQE  286 (980)
T ss_dssp             HHHHHHTTTSCHHHHHCH-----HHHHHHHHHTTS--HHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHHHHHHHCC---
T ss_pred             HHHHHHHhhcCHHhhhcc-----hHHHHHHHHcCC--hHHHHHHHHHHHHHHHcC-CChhhHHHHHHHHhHHHHHHHHhc
Confidence            444433333444444445     667777777765  789999999999999876 33222  1221101112222222 


Q ss_pred             -CCCChhHHHHHHHHHHHhcC------CCc-----hhhHHHH--hCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCC---
Q 011328           84 -RDDFPQLQFEAAWALTNIAS------GTS-----ENTRVVI--DHGAVPIFVRLLSSPTDDVREQAVWALGNVAGD---  146 (488)
Q Consensus        84 -~~~~~~v~~~a~~~L~~l~~------~~~-----~~~~~~~--~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~---  146 (488)
                       ..+ .+.....++.+..++.      ..+     +.+....  -.+.++.++.++.+++.++...++..+..+...   
T Consensus       287 ~~~D-~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~l~~~~~  365 (980)
T 3ibv_A          287 QSTD-PNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDLLVSLRK  365 (980)
T ss_dssp             --CC-HHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHHHHHHHH
T ss_pred             cccc-HHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHh
Confidence             344 6666555554433321      111     1111111  125789999999998889888877777665521   


Q ss_pred             -------CchhHHHHHhcCChHHHHHHhcccc-----------cH----hHHHHHHHHHHHhhcC-CCCCChhhhh-chH
Q 011328          147 -------SPKCRDLVLSNGALMPLLAQFNEHA-----------KL----SMLRNATWTLSNFCRG-KPQPLFEQTR-PAL  202 (488)
Q Consensus       147 -------~~~~~~~~~~~~~l~~L~~ll~~~~-----------~~----~v~~~a~~~L~~l~~~-~~~~~~~~~~-~~~  202 (488)
                             .+..+..+.  ..+..+++.+...+           +.    +.|.... .+...+.. .+........ .+.
T Consensus       366 ~~~~~~~~~~~~~~l~--~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~-~l~d~~~~l~~~~~l~~~~~~i~  442 (980)
T 3ibv_A          366 ESSSKELSASLKEFLK--SLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLK-IFQDTINSIDSSLFSSYMYSAIT  442 (980)
T ss_dssp             HTTSCCCCHHHHHHHH--HHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHH-HHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             ccccccccHHHHHHHH--HHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHH-HHHHHHHhcChHHHHHHHHHHHH
Confidence                   111111111  13334444442111           01    2333333 33222211 1111011001 122


Q ss_pred             HHHHHhhc---cCChhHHHHHHHHHHHhccCCchhHHHHH-Hh----CCHHHHHHhcC-----CCCcchHhHHHHHHhHh
Q 011328          203 PALERLIH---SNDDEVLTDACWALSYLSDGTNDKIQAVI-EA----GVCPRLVELLR-----HPSPSVLIPALRTVGNI  269 (488)
Q Consensus       203 ~~l~~ll~---~~~~~v~~~al~~L~~l~~~~~~~~~~~~-~~----~~l~~L~~lL~-----~~~~~v~~~a~~~L~~l  269 (488)
                      +.+...+.   +.++..++.++.+++.+++.-......+. ..    .+++.+..++.     .+.+.++..++++++..
T Consensus       443 ~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~ry  522 (980)
T 3ibv_A          443 SSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRY  522 (980)
T ss_dssp             HHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHH
Confidence            22223332   34688899999999999876432111000 00    13345555544     56788999999999998


Q ss_pred             hcCCchhhHHHhhCCChHHHHHHh------cccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHH----HhcC
Q 011328          270 VTGDDMQTQCIINHQALPCLLDLL------TQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNL----LLNA  339 (488)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~L~~lL------~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~l----l~~~  339 (488)
                      +..-...      ...++.++..+      .++ +..++..|+.++.+++.......     .+.++.++..    +...
T Consensus       523 s~~~~~~------~~~l~~~L~~ll~~~gl~~~-~~~V~~~a~~af~~f~~~~~~~L-----~~~~~~il~~l~~lL~~~  590 (980)
T 3ibv_A          523 ASFFDYE------SAAIPALIEYFVGPRGIHNT-NERVRPRAWYLFYRFVKSIKKQV-----VNYTESSLAMLGDLLNIS  590 (980)
T ss_dssp             GGGGGTC------CTTHHHHHHHHTSTTTTTCC-CTTTHHHHHHHHHHHHHHTTTTC-----SSSHHHHHHHTTGGGCCC
T ss_pred             HHHHhcC------chhHHHHHHHHhccccccCC-ChhHHHHHHHHHHHHHHHhhHHh-----hhHHHHHHHHHHHhhcCc
Confidence            8744322      23455555544      345 67899999999999987322211     1223333333    3311


Q ss_pred             -----C----------------hhHHHHHHHHHHHhccCC--CHHHHHHHHH---CCChHHHHhhcCCC----CHHH-HH
Q 011328          340 -----E----------------FEIKKEAAWAISNATSGG--SNEQIKFLVS---QGCIKPLCDLLNCP----DPRI-VT  388 (488)
Q Consensus       340 -----~----------------~~v~~~a~~aL~~l~~~~--~~~~~~~l~~---~~~i~~L~~ll~~~----~~~v-~~  388 (488)
                           +                .+-+.....+++.++...  .++......+   ...+..+..++...    +... ..
T Consensus       591 ~~~~~~~~~~~~~~~~~~~~~~~~~ql~L~eaig~li~~~~~~~e~~~~~l~~ll~pl~~~l~~~l~~~~~~~~~~~~i~  670 (980)
T 3ibv_A          591 VSPVTDMDAPVPTLNSSIRNSDFNSQLYLFETVGVLISSGNLTPEEQALYCDSLINALIGKANAALSSDLSALENIISVY  670 (980)
T ss_dssp             CCCCCC--CSSCCHHHHHHTTTHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTSCC--CHHHHHH
T ss_pred             CCCCCcccccccchhhhcccCCchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCccHHHHHH
Confidence                 0                123455667777776432  2332222222   12233333344322    2222 23


Q ss_pred             HHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhc--CCCHHHHHHHHHHHHHhcCC
Q 011328          389 VCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQS--HDNTEIYEKAVKILETYWVE  454 (488)
Q Consensus       389 ~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~--~~~~~v~~~a~~~l~~~~~~  454 (488)
                      ..+.++.++.+......     ....++...|.+.  .+.+....+  ..+..|++++...++++...
T Consensus       671 ~~i~al~~lakgf~~~~-----~~~~p~~~~f~~~--~~~il~~l~~~~~~~~irea~~~~~~r~i~~  731 (980)
T 3ibv_A          671 CSLMAIGNFAKGFPARG-----SEEVAWLASFNKA--SDEIFLILDRMGFNEDIRGAVRFTSGRIINV  731 (980)
T ss_dssp             HHHHHHHHHHHTSCSCC------CCCSHHHHHHHH--HHHHHHHHHHSCCSHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHhccCCccc-----CCCCcHHHHHHHH--HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHH
Confidence            45566666665432211     1112245555433  444544443  45789999999999998765

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=97.79  E-value=0.00025  Score=67.55  Aligned_cols=255  Identities=12%  Similarity=0.084  Sum_probs=149.3

Q ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhH
Q 011328           31 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR  110 (488)
Q Consensus        31 ~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~  110 (488)
                      ....|+..|.++..++|.-|+-.|+.++...... .      |-.       ...+ .   ..|++.++-++-+.     
T Consensus       175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~G-A------GR~-------~~~N-~---DLAvRLLCVLALDR-----  231 (800)
T 3oc3_A          175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNG-G------DIQ-------IRVD-S---KLFSKIYEILVTDK-----  231 (800)
T ss_dssp             TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC-----------CC-------CCCC-T---THHHHHHHHHHHBC-----
T ss_pred             HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccC-C------cee-------cccc-H---HHHHHHHHHHHhcc-----
Confidence            3456788888899999999999999888754210 0      110       1111 1   33444444444310     


Q ss_pred             HHHhCCCHHHHHHhhCC-CCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcC
Q 011328          111 VVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG  189 (488)
Q Consensus       111 ~~~~~g~i~~L~~~L~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~  189 (488)
                                +-.+.++ --..||+.|+.+|+.+ ..-+.-      ..++..++..+ .....+++..++-.|..+ .+
T Consensus       232 ----------FGDYVSDqVVAPVRETaAQtLGaL-~hLp~e------~~IL~qLV~~l-~~~~WEVRHGGLLGLKYL-~D  292 (800)
T 3oc3_A          232 ----------FNDFVDDRTVAPVRDAAAYLLSRI-YPLIGP------NDIIEQLVGFL-DSGDWQVQFSGLIALGYL-KE  292 (800)
T ss_dssp             ----------CBBCSSSSCBCHHHHHHHHHHHHH-TTTSCS------CCHHHHHTTGG-GCSCHHHHHHHHHHHHHT-GG
T ss_pred             ----------ccccccCeeeeehHHHHHHHHHHH-HhCChh------HHHHHHHHhhc-CCCCeeehhhhHHHHHHH-HH
Confidence                      0111221 2346788888888887 444331      23344444444 455677888888888877 11


Q ss_pred             CCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCC--cchHhHHHHHHh
Q 011328          190 KPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPS--PSVLIPALRTVG  267 (488)
Q Consensus       190 ~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~--~~v~~~a~~~L~  267 (488)
                      --.    ...++++.++..|.+.|++|+..|+.+|..++  .++...     .++..+.+.|.+.+  ..-....+..|+
T Consensus       293 LL~----~Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA--~p~~l~-----~LL~iLWd~L~~LDDLSASTgSVMdLLA  361 (800)
T 3oc3_A          293 FVE----DKDGLCRKLVSLLSSPDEDIKLLSAELLCHFP--ITDSLD-----LVLEKCWKNIESEELISVSKTSNLSLLT  361 (800)
T ss_dssp             GCC----CHHHHHHHHHHHTTCSSHHHHHHHHHHHTTSC--CSSTHH-----HHHHHHHHHHHTCCSCCTTHHHHHHHHH
T ss_pred             HHH----HHHHHHHHHHhhcCCcccHHHHHHHHHhhhhc--chhhHH-----HHHHHHHHHhhhhcccchhhHHHHHHHH
Confidence            111    15677888888888888888888888888888  222333     23344444443321  222334566666


Q ss_pred             HhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHH
Q 011328          268 NIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEA  347 (488)
Q Consensus       268 ~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a  347 (488)
                      .++.....   .......+|.|..++.+. -..||..++.++..+.  .....+.+.        .+++-..+.+++..+
T Consensus       362 kL~s~p~~---a~~dp~LVPRL~PFLRHt-ITSVR~AVL~TL~tfL--~~~~LRLIF--------QNILLE~neeIl~lS  427 (800)
T 3oc3_A          362 KIYRENPE---LSIPPERLKDIFPCFTSP-VPEVRTSILNMVKNLS--EESIDFLVA--------EVVLIEEKDEIREMA  427 (800)
T ss_dssp             HHHHHCTT---CCCCSGGGGGTGGGGTCS-SHHHHHHHHHHTTTCC--CHHHHHHHH--------HHHHHCSCHHHHHHH
T ss_pred             HHHcCCcc---cccChHHHHHHHhhhcCC-cHHHHHHHHHHHHHHH--hhhHHHHHH--------HHHHhCCcHHHHHHH
Confidence            66664431   112336788888888888 8889998888888776  233322222        234556677777777


Q ss_pred             HHHHH
Q 011328          348 AWAIS  352 (488)
Q Consensus       348 ~~aL~  352 (488)
                      ..+..
T Consensus       428 ~~VWk  432 (800)
T 3oc3_A          428 IKLLK  432 (800)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            76664

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=97.71  E-value=0.00049  Score=73.29  Aligned_cols=305  Identities=10%  Similarity=0.021  Sum_probs=164.7

Q ss_pred             CCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCC--chhhHHHHhCCCH
Q 011328           41 SDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGT--SENTRVVIDHGAV  118 (488)
Q Consensus        41 s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~--~~~~~~~~~~g~i  118 (488)
                      +.++.++..++.++...++   .-....+++.+.++.+.++|.+   ++++..|+.||..+....  ++.+..++..=.+
T Consensus       204 ~~~~~l~~~~L~~l~s~i~---wi~~~~i~~~~ll~~l~~~L~~---~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L  277 (980)
T 3ibv_A          204 AKNYGTVGLCLQVYAQWVS---WININLIVNEPCMNLLYSFLQI---EELRCAACETMTEIVNKKMKPLEKLNLLNILNL  277 (980)
T ss_dssp             TTCHHHHHHHHHHHHHHTT---TSCHHHHHCHHHHHHHHHHTTS---HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHh---hcCHHhhhcchHHHHHHHHcCC---hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhH
Confidence            4778888899999999876   3456777788899999999875   789999999999998743  3333333322011


Q ss_pred             HHHHHhhC--CCCHHHHHHHHHHHhhhhC------CCc-----hhHHH--HHhcCChHHHHHHhcccccHhHHHHHHHHH
Q 011328          119 PIFVRLLS--SPTDDVREQAVWALGNVAG------DSP-----KCRDL--VLSNGALMPLLAQFNEHAKLSMLRNATWTL  183 (488)
Q Consensus       119 ~~L~~~L~--~~~~~v~~~a~~~L~~l~~------~~~-----~~~~~--~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L  183 (488)
                      ...+..+.  .++.++.+..++.+..++.      ..+     +.+..  -.-.+.++.++... .+++.++...++..+
T Consensus       278 ~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~-~~~~deVs~~t~~Fw  356 (980)
T 3ibv_A          278 NLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYL-SDDYDETSTAVFPFL  356 (980)
T ss_dssp             HHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHH-TCSSHHHHHTTHHHH
T ss_pred             HHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHh-CCCchhHHHHHHHHH
Confidence            11222222  3667776655555544321      111     00000  01123666777777 455667766666665


Q ss_pred             HHhhcCC---CC--CChhh----hhchHHHHHHhhccC-----C-----------hhHHHHHHHHHHHhccCCchhHHHH
Q 011328          184 SNFCRGK---PQ--PLFEQ----TRPALPALERLIHSN-----D-----------DEVLTDACWALSYLSDGTNDKIQAV  238 (488)
Q Consensus       184 ~~l~~~~---~~--~~~~~----~~~~~~~l~~ll~~~-----~-----------~~v~~~al~~L~~l~~~~~~~~~~~  238 (488)
                      ..+....   +.  .....    ...+++.++.-++-+     +           .+.|......+..++.-.++..-..
T Consensus       357 ~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~~l~d~~~~l~~~~~l~~  436 (980)
T 3ibv_A          357 SDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLKIFQDTINSIDSSLFSSY  436 (980)
T ss_dssp             HHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred             HHHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHHHHHHHHHhcChHHHHHH
Confidence            5544321   11  11112    233444444444311     0           1233333322222222122111110


Q ss_pred             HHhCCHHHHHHhcC---CCCcchHhHHHHHHhHhhcCCchhhHHH-hh----CCChHHHHHHhc-----ccchhhHHHHH
Q 011328          239 IEAGVCPRLVELLR---HPSPSVLIPALRTVGNIVTGDDMQTQCI-IN----HQALPCLLDLLT-----QNYKKSIKKEA  305 (488)
Q Consensus       239 ~~~~~l~~L~~lL~---~~~~~v~~~a~~~L~~l~~~~~~~~~~~-~~----~~~~~~L~~lL~-----~~~~~~v~~~a  305 (488)
                      .-.-+.+.+.+.+.   +.++..++.++.+++.++.+-....... -.    ..+++.+..+++     .+ .+.|+..+
T Consensus       437 ~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~-hp~V~~~~  515 (980)
T 3ibv_A          437 MYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHP-HPLVQLLY  515 (980)
T ss_dssp             HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCC-CHHHHHHH
T ss_pred             HHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCC-CHHHHHHH
Confidence            00011122223332   2357788999999999987644322111 01    124455555554     44 78999999


Q ss_pred             HHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhc------CChhHHHHHHHHHHHhccCCC
Q 011328          306 CWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN------AEFEIKKEAAWAISNATSGGS  359 (488)
Q Consensus       306 ~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~------~~~~v~~~a~~aL~~l~~~~~  359 (488)
                      +++++..+.--..      ....++.++..+-+      ++..|+..|+.++.+++..+.
T Consensus       516 ~~~l~rys~~~~~------~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~  569 (980)
T 3ibv_A          516 MEILVRYASFFDY------ESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIK  569 (980)
T ss_dssp             HHHHHHTGGGGGT------CCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhc------CchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhh
Confidence            9999998872111      12355555555544      467899999999999987553

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=97.49  E-value=0.0024  Score=57.46  Aligned_cols=193  Identities=13%  Similarity=0.117  Sum_probs=127.4

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHH-HHH--HcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCc
Q 011328           30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPIN-EVI--QSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTS  106 (488)
Q Consensus        30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~-~~~--~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~  106 (488)
                      ..+| +-+.|.|.+...|..|+..+.+++......... ...  -....+.+.+.+.+.+ ..++..++.++..++....
T Consensus        10 sklp-l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN-~~v~~~al~~l~~~~~~~~   87 (278)
T 4ffb_C           10 TTLP-LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSN-VVAQEQAIVALNSLIDAFA   87 (278)
T ss_dssp             -CCC-HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSS-HHHHHHHHHHHHHHHTTCC
T ss_pred             hcCC-HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccch-HHHHHHHHHHHHHHHHHhh
Confidence            4455 678899999999999999999988754222111 111  1234566777888888 8999999999998875221


Q ss_pred             -----hhhHHHHhCCCHHHHHH-hhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHH
Q 011328          107 -----ENTRVVIDHGAVPIFVR-LLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNAT  180 (488)
Q Consensus       107 -----~~~~~~~~~g~i~~L~~-~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~  180 (488)
                           .......-..+++.|+. .+.+..+.++..+..++..++...... ..     .++.++..+ .+.++.++..++
T Consensus        88 ~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~-~~-----~~e~l~~~l-~~Knpkv~~~~l  160 (278)
T 4ffb_C           88 SSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI-TQ-----SVELVIPFF-EKKLPKLIAAAA  160 (278)
T ss_dssp             ---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS-HH-----HHHHHGGGG-GCSCHHHHHHHH
T ss_pred             hhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH-HH-----HHHHHHHHH-hccCHHHHHHHH
Confidence                 11111122345677775 477888999999998888776433211 11     133455555 677899999998


Q ss_pred             HHHHHhhcCCC--CC-ChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCC
Q 011328          181 WTLSNFCRGKP--QP-LFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGT  231 (488)
Q Consensus       181 ~~L~~l~~~~~--~~-~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~  231 (488)
                      ..|..+.....  .. .......+++.+..++.+.|+.||..|..++..+-..-
T Consensus       161 ~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~  214 (278)
T 4ffb_C          161 NCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVT  214 (278)
T ss_dssp             HHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC-
T ss_pred             HHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHh
Confidence            88888765421  11 12233456677888899999999999999998876543

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A

Probab=97.47  E-value=0.026  Score=60.24  Aligned_cols=310  Identities=12%  Similarity=0.124  Sum_probs=165.5

Q ss_pred             HHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHH-HHhhCCCCHHHHHHHHHHHhhhhCCC-chhHHHHH
Q 011328           78 FIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIF-VRLLSSPTDDVREQAVWALGNVAGDS-PKCRDLVL  155 (488)
Q Consensus        78 L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L-~~~L~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~  155 (488)
                      +...|+...++++...++.++..... -- ....+++.+.++.+ ..+|  .+++++..|+.+|..+.... ++..+.+.
T Consensus       211 l~~iL~~~~~~~lv~~~L~~L~~~~s-WI-~i~~i~~~~ll~~L~~~~L--~~~~~r~aA~dcL~eIv~k~~~~~~~~~~  286 (1073)
T 3gjx_A          211 CQFVMENSQNAPLVHATLETLLRFLN-WI-PLGYIFETKLISTLIYKFL--NVPMFRNVSLKCLTEIAGVSVSQYEEQFE  286 (1073)
T ss_dssp             HHHHHHHCCCHHHHHHHHHHHHHHTT-TS-CTHHHHSSSHHHHHHHHTS--SSHHHHHHHHHHHHHHHHSCSGGGHHHHH
T ss_pred             HHHHhcccCCHHHHHHHHHHHHHHHH-hc-CHHHhccchHHHHHHHHhc--CChHHHHHHHHHHHHHHhccccchHHHHH
Confidence            33445444447888889999999987 22 23567788888888 4676  56889999999999987542 22222221


Q ss_pred             hcCChHHHH----HHh------------cccccHhHHHHHHHHHHHhhcCCC-----C-CChhhhhchHHHHHHhhccCC
Q 011328          156 SNGALMPLL----AQF------------NEHAKLSMLRNATWTLSNFCRGKP-----Q-PLFEQTRPALPALERLIHSND  213 (488)
Q Consensus       156 ~~~~l~~L~----~ll------------~~~~~~~v~~~a~~~L~~l~~~~~-----~-~~~~~~~~~~~~l~~ll~~~~  213 (488)
                      .  ....++    ..+            ....+++.....+..+..+.....     . ........++..++.+-..++
T Consensus       287 ~--lf~~~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~~~lIe~~p~~~~~l~~~l~~ll~~s~~~d  364 (1073)
T 3gjx_A          287 T--LFTLTMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEHGQLLEKRLNLREALMEALHYMLLVSEVEE  364 (1073)
T ss_dssp             H--HHHHHHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCSC
T ss_pred             H--HHHHHHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhCCCc
Confidence            1  111111    111            122334555556666665544320     0 011122334444555556778


Q ss_pred             hhHHHHHHHHHHHhccC----Cc-----h------------hHHHHHH---hCCHHHHHHhcCCCCc----------chH
Q 011328          214 DEVLTDACWALSYLSDG----TN-----D------------KIQAVIE---AGVCPRLVELLRHPSP----------SVL  259 (488)
Q Consensus       214 ~~v~~~al~~L~~l~~~----~~-----~------------~~~~~~~---~~~l~~L~~lL~~~~~----------~v~  259 (488)
                      .++...++..-..+...    .+     .            ....+..   ..+...++..+..+.+          .+|
T Consensus       365 ~ei~kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~L~~vlI~~m~~P~ev~i~e~e~ge~~r  444 (1073)
T 3gjx_A          365 TEIFKICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQLYLTVLSKVRLLMVSRMAKPEEVLVVENDQGEVVR  444 (1073)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHTTHHHHHHHHHHHHHTCCCSCCEEEEECSSSCEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhHHHHHHHHHHHHHHHHHHhcCCCccccccCcccchHHH
Confidence            88877777665444321    00     0            0111111   0233334444443321          011


Q ss_pred             h------------HHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhccc-chhhHHHHHHHHHHHHhcC-CHH-HHHHHH
Q 011328          260 I------------PALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQN-YKKSIKKEACWTISNITAG-NVN-QIQAII  324 (488)
Q Consensus       260 ~------------~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~-~~~~v~~~a~~~L~nl~~~-~~~-~~~~l~  324 (488)
                      +            ..-.++..++.-.......    -..+.+.+.+..+ .++.....++|+++.++.. .++ ....+.
T Consensus       445 e~~~d~~~~~ly~~mrd~L~~lt~l~~~~~~~----i~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp  520 (1073)
T 3gjx_A          445 EFMKDTDSINLYKNMRETLVYLTHLDYVDTEI----IMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLV  520 (1073)
T ss_dssp             EECSSCHHHHHHHHHHHHHHHHHHHCHHHHHH----HHHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHH
T ss_pred             HHHhhcchHHHHHHHHHHHHHHhcCCHHHHHH----HHHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHH
Confidence            1            1111222222111111111    1223333333332 2588899999999999864 222 222233


Q ss_pred             HcCChHHHHHHHhcC---C--hhHHHHHHHHHHHhccCC--CHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHH
Q 011328          325 EAGIIGPLVNLLLNA---E--FEIKKEAAWAISNATSGG--SNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENI  397 (488)
Q Consensus       325 ~~~~l~~L~~ll~~~---~--~~v~~~a~~aL~~l~~~~--~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l  397 (488)
                        .+++.|+.+...+   +  ..++...+++++.....-  .++..+     .++..|.+.+.++++.++..|+.++..+
T Consensus       521 --~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~-----~vl~~L~~~m~~~~~~vq~aA~~af~~i  593 (1073)
T 3gjx_A          521 --TVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLK-----TVVNKLFEFMHETHDGVQDMACDTFIKI  593 (1073)
T ss_dssp             --HHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHH-----HHHHHHHHHTTCCSTTHHHHHHHHHHHH
T ss_pred             --HHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHH-----HHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence              3677787777654   2  234555667887765421  223222     2678888888888999999999999999


Q ss_pred             HHhhhhh
Q 011328          398 LKAGEAE  404 (488)
Q Consensus       398 ~~~~~~~  404 (488)
                      +..+...
T Consensus       594 ~~~C~~~  600 (1073)
T 3gjx_A          594 AQKCRRH  600 (1073)
T ss_dssp             HHHTGGG
T ss_pred             HHHHHHH
Confidence            9877654

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=97.41  E-value=0.0029  Score=55.59  Aligned_cols=178  Identities=15%  Similarity=0.070  Sum_probs=119.3

Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhc---ccccHhHHHHHHHHHHHhh----cCCC
Q 011328          119 PIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFN---EHAKLSMLRNATWTLSNFC----RGKP  191 (488)
Q Consensus       119 ~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~---~~~~~~v~~~a~~~L~~l~----~~~~  191 (488)
                      +.+...|-+.+..-+..++..|.......+   +.+..  .+..+++.+.   .+++..+...++.+|..+.    ....
T Consensus        49 ~~~~~~lfs~d~k~~~~ale~L~~~l~~~~---~~~~~--~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y  123 (266)
T 2of3_A           49 VSLMSQLFHKDFKQHLAALDSLVRLADTSP---RSLLS--NSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTET  123 (266)
T ss_dssp             HHHHHHHTCSCHHHHHHHHHHHHHHHHHCH---HHHHH--THHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHhhhCh---HHHHH--HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccc
Confidence            344555555566666666666666543322   12211  2222333221   3567788888887777664    2222


Q ss_pred             CCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhc
Q 011328          192 QPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVT  271 (488)
Q Consensus       192 ~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~  271 (488)
                      .........++|.++.-+-++.+.++..+-.++..+....+..       .+++.+.+.+.+.++.+|..++..+..+..
T Consensus       124 ~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~~-------~v~~~l~~g~ksKN~R~R~e~l~~l~~li~  196 (266)
T 2of3_A          124 PMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPL-------KMTPMLLDALKSKNARQRSECLLVIEYYIT  196 (266)
T ss_dssp             CCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH-------HHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCHH-------HHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence            2333334678999999999999999999888887765422211       356778888999999999999999999876


Q ss_pred             CCchhhHHHhhCCCh---HHHHHHhcccchhhHHHHHHHHHHHHhc
Q 011328          272 GDDMQTQCIINHQAL---PCLLDLLTQNYKKSIKKEACWTISNITA  314 (488)
Q Consensus       272 ~~~~~~~~~~~~~~~---~~L~~lL~~~~~~~v~~~a~~~L~nl~~  314 (488)
                      .....     ....+   +.+..++.++ +..||..|..++..+-.
T Consensus       197 ~~G~~-----~~~~l~~~~~ia~ll~D~-d~~VR~aAl~~lve~y~  236 (266)
T 2of3_A          197 NAGIS-----PLKSLSVEKTVAPFVGDK-DVNVRNAAINVLVACFK  236 (266)
T ss_dssp             HHCSG-----GGGGGCHHHHHGGGGGCS-SHHHHHHHHHHHHHHHH
T ss_pred             hcCCC-----ccccccchHHHHHHHcCC-CHHHHHHHHHHHHHHHH
Confidence            43322     23467   8999999998 99999999999997765

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=97.39  E-value=0.0059  Score=54.88  Aligned_cols=190  Identities=11%  Similarity=0.103  Sum_probs=127.0

Q ss_pred             HHHhcCCCCcchHhHHHHHHhHhhcCCchhhH--HHh--hCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCC------
Q 011328          247 LVELLRHPSPSVLIPALRTVGNIVTGDDMQTQ--CII--NHQALPCLLDLLTQNYKKSIKKEACWTISNITAGN------  316 (488)
Q Consensus       247 L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~--~~~--~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~------  316 (488)
                      +-.-|.+.++..|..|+..+..+....+....  ...  -....+.+...+.+. +..+...++.++..++...      
T Consensus        14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~Ds-N~~v~~~al~~l~~~~~~~~~~~~~   92 (278)
T 4ffb_C           14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDS-NVVAQEQAIVALNSLIDAFASSSLK   92 (278)
T ss_dssp             HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCS-SHHHHHHHHHHHHHHHTTCC---CC
T ss_pred             HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHHHhhhhhcc
Confidence            56778999999999999999887764332111  111  123456677788888 9999999999999887621      


Q ss_pred             HHHHHHHHHcCChHHHHHH-HhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHH
Q 011328          317 VNQIQAIIEAGIIGPLVNL-LLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLE  395 (488)
Q Consensus       317 ~~~~~~l~~~~~l~~L~~l-l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~  395 (488)
                      ....... -..+++.|+.- +.+....++..+..++..++......  ..     +++.+...+++.++.++..++..|.
T Consensus        93 ~~~~~~~-~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~--~~-----~~e~l~~~l~~Knpkv~~~~l~~l~  164 (278)
T 4ffb_C           93 NAHNITL-ISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI--TQ-----SVELVIPFFEKKLPKLIAAAANCVY  164 (278)
T ss_dssp             HHHHHHH-HHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS--HH-----HHHHHGGGGGCSCHHHHHHHHHHHH
T ss_pred             cchhHHH-HHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH--HH-----HHHHHHHHHhccCHHHHHHHHHHHH
Confidence            1111122 22467777764 66777889999999888886543211  11     3567778889999999999999999


Q ss_pred             HHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCCC
Q 011328          396 NILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVEE  455 (488)
Q Consensus       396 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~  455 (488)
                      +++.......       .+ ....+.  ..++.+..++++.+++||..|..++-.+|.--
T Consensus       165 ~~l~~fg~~~-------~~-~k~~l~--~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~  214 (278)
T 4ffb_C          165 ELMAAFGLTN-------VN-VQTFLP--ELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVT  214 (278)
T ss_dssp             HHHHHHTTTT-------CC-HHHHHH--HHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC-
T ss_pred             HHHHHhCCCc-------CC-chhHHH--HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHh
Confidence            9886532110       00 122221  23566788899999999999999997777653

>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*

Probab=97.34  E-value=0.02  Score=51.44  Aligned_cols=202  Identities=15%  Similarity=0.095  Sum_probs=145.2

Q ss_pred             HHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCch----hhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHH
Q 011328          236 QAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDM----QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISN  311 (488)
Q Consensus       236 ~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~----~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~n  311 (488)
                      +.+...+++..|+..|..-+-+.|..+..+..++.+....    ....+..  -.+.+..++..-.++++-..+...|..
T Consensus        72 ~ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~--~peil~~L~~gYe~~diAl~~G~mLRe  149 (341)
T 1upk_A           72 QELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICT--QQNILFMLLKGYESPEIALNCGIMLRE  149 (341)
T ss_dssp             HHHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHT--CTHHHHHHHHGGGSTTTHHHHHHHHHH
T ss_pred             HHHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHc--CHHHHHHHHHhhccchhHhHHHHHHHH
Confidence            4466678899999999888888999999999998875442    2223322  133333333333345666667777777


Q ss_pred             HhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHC--CChHHHHhhcCCCCHHHHHH
Q 011328          312 ITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQ--GCIKPLCDLLNCPDPRIVTV  389 (488)
Q Consensus       312 l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~--~~i~~L~~ll~~~~~~v~~~  389 (488)
                      ++.+ +...+.++..+.+..+...++.++.++...|..++..+......-...++..+  .+...+..++.+++.-++.+
T Consensus       150 cir~-e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQ  228 (341)
T 1upk_A          150 CIRH-EPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQ  228 (341)
T ss_dssp             HHTS-HHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHH
T ss_pred             HHHh-HHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHH
Confidence            7766 67777788888899999999999999999999999988766533333333321  34677778999999999999


Q ss_pred             HHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHH
Q 011328          390 CLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILE  449 (488)
Q Consensus       390 al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~~~~~v~~~a~~~l~  449 (488)
                      ++..|+.++..-.....         ....+.+..-+..+..++.+++..++-.|..+..
T Consensus       229 SlKLLgelLldr~N~~v---------M~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFK  279 (341)
T 1upk_A          229 SLKLLGELLLDRHNFTI---------MTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFK  279 (341)
T ss_dssp             HHHHHHHHHHSGGGHHH---------HHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCchHHHH---------HHHHhCCHHHHHHHHHHhcCchhchhhhhhhhee
Confidence            99999999865443321         3555555566888888888989888888777644

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=97.34  E-value=0.0013  Score=57.72  Aligned_cols=178  Identities=14%  Similarity=0.086  Sum_probs=119.8

Q ss_pred             HHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHH----hcCCCCcchHhHHHHHHhHhhcCCch---h
Q 011328          204 ALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVE----LLRHPSPSVLIPALRTVGNIVTGDDM---Q  276 (488)
Q Consensus       204 ~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~----lL~~~~~~v~~~a~~~L~~l~~~~~~---~  276 (488)
                      .+...+-+.|.+-+..++..|.......++.   ++  ..++.+++    .+.+.+..+...++.+|..+...-..   .
T Consensus        50 ~~~~~lfs~d~k~~~~ale~L~~~l~~~~~~---~~--~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~  124 (266)
T 2of3_A           50 SLMSQLFHKDFKQHLAALDSLVRLADTSPRS---LL--SNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETP  124 (266)
T ss_dssp             HHHHHHTCSCHHHHHHHHHHHHHHHHHCHHH---HH--HTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHhhhChHH---HH--HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcccc
Confidence            3455555667777777777777655433322   21  22233333    33467888888888888887532111   0


Q ss_pred             hHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhc-CCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhc
Q 011328          277 TQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA-GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNAT  355 (488)
Q Consensus       277 ~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~  355 (488)
                      ....-..-++|.|+.-+.++ ...+|..+-.++..+.. .++.        .+++.++.-+.+.+..+|..++..+..+.
T Consensus       125 ~~~~ea~~~lP~LveKlGd~-k~~vR~~~r~il~~l~~v~~~~--------~v~~~l~~g~ksKN~R~R~e~l~~l~~li  195 (266)
T 2of3_A          125 MSQEEVSAFVPYLLLKTGEA-KDNMRTSVRDIVNVLSDVVGPL--------KMTPMLLDALKSKNARQRSECLLVIEYYI  195 (266)
T ss_dssp             CCHHHHHHHHHHHHHGGGCS-SHHHHHHHHHHHHHHHHHHCHH--------HHHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHCCHH--------HHHHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence            01111134789999999888 88899888877776654 2232        25667778888899999999999999997


Q ss_pred             cCCCHHHHHHHHHCCCh---HHHHhhcCCCCHHHHHHHHHHHHHHHHhh
Q 011328          356 SGGSNEQIKFLVSQGCI---KPLCDLLNCPDPRIVTVCLEGLENILKAG  401 (488)
Q Consensus       356 ~~~~~~~~~~l~~~~~i---~~L~~ll~~~~~~v~~~al~~L~~l~~~~  401 (488)
                      ......      ....+   +.+..++.++|..+|..|+.++..+....
T Consensus       196 ~~~G~~------~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~  238 (266)
T 2of3_A          196 TNAGIS------PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFE  238 (266)
T ss_dssp             HHHCSG------GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHH
T ss_pred             HhcCCC------ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHh
Confidence            532222      23568   99999999999999999999998887553

>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*

Probab=97.29  E-value=0.043  Score=49.31  Aligned_cols=225  Identities=10%  Similarity=0.091  Sum_probs=160.2

Q ss_pred             hchHHHHHHhhccCChhHHHHHHHHHHHhccCCch----hHHHHHH-hCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCC
Q 011328          199 RPALPALERLIHSNDDEVLTDACWALSYLSDGTND----KIQAVIE-AGVCPRLVELLRHPSPSVLIPALRTVGNIVTGD  273 (488)
Q Consensus       199 ~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~----~~~~~~~-~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~  273 (488)
                      .+.+..++..+..-+-+.+..+..+..++.....+    ..+.+.+ .+++..|+..-.  ++++...+-..|...+. .
T Consensus        77 ~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe--~~diAl~~G~mLRecir-~  153 (341)
T 1upk_A           77 SGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYE--SPEIALNCGIMLRECIR-H  153 (341)
T ss_dssp             HSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGG--STTTHHHHHHHHHHHHT-S
T ss_pred             hCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhc--cchhHhHHHHHHHHHHH-h
Confidence            56788888888888999999999999988865432    2233332 234444444443  45566666666666666 5


Q ss_pred             chhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcC---ChHHHHHHHhcCChhHHHHHHHH
Q 011328          274 DMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAG---IIGPLVNLLLNAEFEIKKEAAWA  350 (488)
Q Consensus       274 ~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~---~l~~L~~ll~~~~~~v~~~a~~a  350 (488)
                      +...+.++....+..+.+.++.+ +.++...|..++..+..........++..+   ++...-.++.+++.-.|.+++..
T Consensus       154 e~la~~iL~~~~f~~fF~yv~~~-~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKL  232 (341)
T 1upk_A          154 EPLAKIILWSEQFYDFFRYVEMS-TFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKL  232 (341)
T ss_dssp             HHHHHHHHHSGGGGHHHHHTTCS-SHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred             HHHHHHHhccHHHHHHHHHhcCC-CchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHH
Confidence            56677778888888999999999 999999999999988876566666666533   57777889999999999999999


Q ss_pred             HHHhccCCC--HHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhh--ccH
Q 011328          351 ISNATSGGS--NEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDA--EGL  426 (488)
Q Consensus       351 L~~l~~~~~--~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~--g~~  426 (488)
                      |+.+.....  .-..+++.+..-+..++.+|+++...++..|...+.-++....+..         ++...+..+  ..+
T Consensus       233 LgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K~~---------~I~~IL~~Nr~kLl  303 (341)
T 1upk_A          233 LGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQ---------PILDILLKNQAKLI  303 (341)
T ss_dssp             HHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCH---------HHHHHHHHTHHHHH
T ss_pred             HHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCCCh---------HHHHHHHHHHHHHH
Confidence            999987532  2234455555679999999999999999999888876665433322         245555433  345


Q ss_pred             HHHHHhhcCC
Q 011328          427 EKIENLQSHD  436 (488)
Q Consensus       427 ~~L~~l~~~~  436 (488)
                      +.|..+..+.
T Consensus       304 ~fl~~f~~d~  313 (341)
T 1upk_A          304 EFLSKFQNDR  313 (341)
T ss_dssp             HHHHHTTTTC
T ss_pred             HHHHhCCCCC
Confidence            5566665443

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A

Probab=97.27  E-value=0.028  Score=60.00  Aligned_cols=297  Identities=12%  Similarity=0.121  Sum_probs=156.6

Q ss_pred             CCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHH-HHhhcCCCChhHHHHHHHHHHHhcCCC-chhhHHHHh--CC
Q 011328           41 SDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRF-IEFLSRDDFPQLQFEAAWALTNIASGT-SENTRVVID--HG  116 (488)
Q Consensus        41 s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L-~~lL~~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~--~g  116 (488)
                      +.++++...++.++..+++   .-....+++.+.++.+ ..+|.  + ++++..|+.||..+.... ++....+..  ..
T Consensus       218 ~~~~~lv~~~L~~L~~~~s---WI~i~~i~~~~ll~~L~~~~L~--~-~~~r~aA~dcL~eIv~k~~~~~~~~~~~lf~~  291 (1073)
T 3gjx_A          218 SQNAPLVHATLETLLRFLN---WIPLGYIFETKLISTLIYKFLN--V-PMFRNVSLKCLTEIAGVSVSQYEEQFETLFTL  291 (1073)
T ss_dssp             CCCHHHHHHHHHHHHHHTT---TSCTHHHHSSSHHHHHHHHTSS--S-HHHHHHHHHHHHHHHHSCSGGGHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHH---hcCHHHhccchHHHHHHHHhcC--C-hHHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence            4677777788888888765   3346778888999988 46664  3 789999999999988632 222222211  11


Q ss_pred             CHHHHHHhh-------------CCCCHHHHHHHHHHHhhhhCCC-------chhHHHHHhcCChHHHHHHhcccccHhHH
Q 011328          117 AVPIFVRLL-------------SSPTDDVREQAVWALGNVAGDS-------PKCRDLVLSNGALMPLLAQFNEHAKLSML  176 (488)
Q Consensus       117 ~i~~L~~~L-------------~~~~~~v~~~a~~~L~~l~~~~-------~~~~~~~~~~~~l~~L~~ll~~~~~~~v~  176 (488)
                      ++..+..++             ...+.+.....+..+..+.+..       ++.+..+..  ++..++..- ..++.++.
T Consensus       292 ~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~~~lIe~~p~~~~~l~~--~l~~ll~~s-~~~d~ei~  368 (1073)
T 3gjx_A          292 TMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEHGQLLEKRLNLREALME--ALHYMLLVS-EVEETEIF  368 (1073)
T ss_dssp             HHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHH--HHHHHHHHT-TCSCHHHH
T ss_pred             HHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHH--HHHHHHHHh-CCCcHHHH
Confidence            222222222             1123455555566666554321       111111111  223333333 44577777


Q ss_pred             HHHHHHHHHhhcC----CCC----C-------------ChhhhhchHHHHH----HhhccCC------------------
Q 011328          177 RNATWTLSNFCRG----KPQ----P-------------LFEQTRPALPALE----RLIHSND------------------  213 (488)
Q Consensus       177 ~~a~~~L~~l~~~----~~~----~-------------~~~~~~~~~~~l~----~ll~~~~------------------  213 (488)
                      ..+...-..|...    .+.    .             ......+++..+.    .-+..++                  
T Consensus       369 kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~L~~vlI~~m~~P~ev~i~e~e~ge~~re~~~  448 (1073)
T 3gjx_A          369 KICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQLYLTVLSKVRLLMVSRMAKPEEVLVVENDQGEVVREFMK  448 (1073)
T ss_dssp             HHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHTTHHHHHHHHHHHHHTCCCSCCEEEEECSSSCEEEEECS
T ss_pred             HHHHHHHHHHHHHHHhhccccccccccccccccccchhHHHHHHHHHHHHHHHHHHhcCCCccccccCcccchHHHHHHh
Confidence            7666554433321    110    0             0011123333333    3332221                  


Q ss_pred             --h-----hHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCC--CCcchHhHHHHHHhHhhcCCchh-hHHHhhC
Q 011328          214 --D-----EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH--PSPSVLIPALRTVGNIVTGDDMQ-TQCIINH  283 (488)
Q Consensus       214 --~-----~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~~-~~~~~~~  283 (488)
                        .     ++...++..+.++..  .+...     -.++.+.+.+..  .++...++++++++.++..-... -..++. 
T Consensus       449 d~~~~~ly~~mrd~L~~lt~l~~--~~~~~-----i~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp-  520 (1073)
T 3gjx_A          449 DTDSINLYKNMRETLVYLTHLDY--VDTEI-----IMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLV-  520 (1073)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHCH--HHHHH-----HHHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHH-
T ss_pred             hcchHHHHHHHHHHHHHHhcCCH--HHHHH-----HHHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHH-
Confidence              0     112223222222211  11111     123344444443  35778899999999998543322 112222 


Q ss_pred             CChHHHHHHhcccc----hhhHHHHHHHHHHHHhc---CCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhcc
Q 011328          284 QALPCLLDLLTQNY----KKSIKKEACWTISNITA---GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATS  356 (488)
Q Consensus       284 ~~~~~L~~lL~~~~----~~~v~~~a~~~L~nl~~---~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~  356 (488)
                      .+++.|+.+..++.    ...++...+|+++....   .+++...     .++..|++.+..+++.|+..|+.++..++.
T Consensus       521 ~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~-----~vl~~L~~~m~~~~~~vq~aA~~af~~i~~  595 (1073)
T 3gjx_A          521 TVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLK-----TVVNKLFEFMHETHDGVQDMACDTFIKIAQ  595 (1073)
T ss_dssp             HHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHH-----HHHHHHHHHTTCCSTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHH-----HHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence            45666666664431    22355566789988765   2333222     256678888888899999999999999987


Q ss_pred             CCC
Q 011328          357 GGS  359 (488)
Q Consensus       357 ~~~  359 (488)
                      .+.
T Consensus       596 ~C~  598 (1073)
T 3gjx_A          596 KCR  598 (1073)
T ss_dssp             HTG
T ss_pred             HHH
Confidence            653

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=97.25  E-value=0.00091  Score=63.87  Aligned_cols=246  Identities=14%  Similarity=0.101  Sum_probs=157.8

Q ss_pred             CHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhc--CChHHHHHHhc--c-------cccHhHHHHHHHHHHH
Q 011328          117 AVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSN--GALMPLLAQFN--E-------HAKLSMLRNATWTLSN  185 (488)
Q Consensus       117 ~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~--~~l~~L~~ll~--~-------~~~~~v~~~a~~~L~~  185 (488)
                      +.+.|+.-|-++..++|..|+.+|..+..............  ...-.++-.+.  +       ..-..||+.++.+|+.
T Consensus       175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGa  254 (800)
T 3oc3_A          175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSR  254 (800)
T ss_dssp             TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHH
Confidence            45677777778999999999999999864332100000011  22223333321  1       1124799999999999


Q ss_pred             hhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHH
Q 011328          186 FCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT  265 (488)
Q Consensus       186 l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~  265 (488)
                      + ..-+..     ..++..++..+..+.++++..++-.|.++..    .... . .++++.++..|.+.+++|+..|+.+
T Consensus       255 L-~hLp~e-----~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~D----LL~~-L-d~Vv~aVL~GL~D~DDDVRAVAAet  322 (800)
T 3oc3_A          255 I-YPLIGP-----NDIIEQLVGFLDSGDWQVQFSGLIALGYLKE----FVED-K-DGLCRKLVSLLSSPDEDIKLLSAEL  322 (800)
T ss_dssp             H-TTTSCS-----CCHHHHHTTGGGCSCHHHHHHHHHHHHHTGG----GCCC-H-HHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred             H-HhCChh-----HHHHHHHHhhcCCCCeeehhhhHHHHHHHHH----HHHH-H-HHHHHHHHhhcCCcccHHHHHHHHH
Confidence            9 544433     3455555566678899999999999999821    1111 1 2667888899999999999999999


Q ss_pred             HhHhhcCCchhhHHHhhCCChHHHHHHhcccchh-hHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHH
Q 011328          266 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKK-SIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIK  344 (488)
Q Consensus       266 L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~-~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~  344 (488)
                      |.-++  .+....     .++..+.+.|.+-++- .-....+..|+.++.....   .-.....+|.|..++.+.-..||
T Consensus       323 LiPIA--~p~~l~-----~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~---a~~dp~LVPRL~PFLRHtITSVR  392 (800)
T 3oc3_A          323 LCHFP--ITDSLD-----LVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE---LSIPPERLKDIFPCFTSPVPEVR  392 (800)
T ss_dssp             HTTSC--CSSTHH-----HHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT---CCCCSGGGGGTGGGGTCSSHHHH
T ss_pred             hhhhc--chhhHH-----HHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc---cccChHHHHHHHhhhcCCcHHHH
Confidence            99998  222222     3455666666543121 1223344556665553211   00112578999999999999999


Q ss_pred             HHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHH
Q 011328          345 KEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLE  395 (488)
Q Consensus       345 ~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~  395 (488)
                      ..++.+|..+.   .....+.+.        .+++-+++++++..+..+..
T Consensus       393 ~AVL~TL~tfL---~~~~LRLIF--------QNILLE~neeIl~lS~~VWk  432 (800)
T 3oc3_A          393 TSILNMVKNLS---EESIDFLVA--------EVVLIEEKDEIREMAIKLLK  432 (800)
T ss_dssp             HHHHHHTTTCC---CHHHHHHHH--------HHHHHCSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH---hhhHHHHHH--------HHHHhCCcHHHHHHHHHHHH
Confidence            99999999887   223333332        25666788888888887774

>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}

Probab=97.20  E-value=0.015  Score=49.84  Aligned_cols=186  Identities=11%  Similarity=0.133  Sum_probs=124.3

Q ss_pred             ChhHHHHHHHHHHHhccCCchhHHHHHHh-CCHHHHHHh-------cCCCCc-----chHhHHHHHHhHhhcCCchhhHH
Q 011328          213 DDEVLTDACWALSYLSDGTNDKIQAVIEA-GVCPRLVEL-------LRHPSP-----SVLIPALRTVGNIVTGDDMQTQC  279 (488)
Q Consensus       213 ~~~v~~~al~~L~~l~~~~~~~~~~~~~~-~~l~~L~~l-------L~~~~~-----~v~~~a~~~L~~l~~~~~~~~~~  279 (488)
                      +++.++.|+.-|+.--+..++....+... |.+..|++=       +..+.-     .-.-.|+..+-.++. .++.+..
T Consensus        14 ~p~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQcvAs-hpetr~~   92 (268)
T 2fv2_A           14 SPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVAS-HPETRSA   92 (268)
T ss_dssp             STTTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHHHHH-CTTTHHH
T ss_pred             CchhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHHHHc-CcchhhH
Confidence            45568888777766444444444444443 544444322       222211     112345555666666 5667788


Q ss_pred             HhhCCChHHHHHHhccc----chhhHHHHHHHHHHHHhc-CCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHh
Q 011328          280 IINHQALPCLLDLLTQN----YKKSIKKEACWTISNITA-GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNA  354 (488)
Q Consensus       280 ~~~~~~~~~L~~lL~~~----~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l  354 (488)
                      ++++++.-.|..+|+..    ..+.+|-.++++++.+.. .+++.+..+.+.+++|..++.++.++.-.|..|...+..+
T Consensus        93 Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqKI  172 (268)
T 2fv2_A           93 FLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKI  172 (268)
T ss_dssp             HHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             HHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence            88989888888888543    246789999999999998 6789999999999999999999999999999999999998


Q ss_pred             ccCCCHHHHHHHHHC--------CChHHHH-hhcCCCCHHHHHHHHHHHHHHHHhh
Q 011328          355 TSGGSNEQIKFLVSQ--------GCIKPLC-DLLNCPDPRIVTVCLEGLENILKAG  401 (488)
Q Consensus       355 ~~~~~~~~~~~l~~~--------~~i~~L~-~ll~~~~~~v~~~al~~L~~l~~~~  401 (488)
                      ....  ....++.+.        .++..++ .+.+++++.+.++++.+..++....
T Consensus       173 L~dd--~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~  226 (268)
T 2fv2_A          173 LLDD--TGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNP  226 (268)
T ss_dssp             HHSH--HHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSH
T ss_pred             hccc--hhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCH
Confidence            8643  344433221        1222222 3445677888888887777775443

>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*

Probab=96.97  E-value=0.082  Score=47.39  Aligned_cols=313  Identities=18%  Similarity=0.191  Sum_probs=175.2

Q ss_pred             HHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccc
Q 011328           92 FEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHA  171 (488)
Q Consensus        92 ~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~  171 (488)
                      ..+...|.-+. .++...+-+++.+++..+.....-++.++.+..+..|...+....-+...+  .+.++.++..+..++
T Consensus       261 tR~FDLL~LLm-HdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~t~L--~e~LPFi~~~i~~h~  337 (619)
T 3c2g_A          261 IRTFDLLGLLL-HDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAKTPL--ENILPFLLRLIEIHP  337 (619)
T ss_dssp             HHHHHHHHHHC-CSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGTSCC--TTHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHh-cccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhhccc--cccchHHHHHhccCC
Confidence            34444444444 478888889999999999999999999999999999988864332221111  235788888888888


Q ss_pred             cHhHHHHHHHHHHHhhcCC-CCCChhhhhchHHHHHHhhccC-------ChhHHHHHH-------HHHHHhcc------C
Q 011328          172 KLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIHSN-------DDEVLTDAC-------WALSYLSD------G  230 (488)
Q Consensus       172 ~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~~~l~~ll~~~-------~~~v~~~al-------~~L~~l~~------~  230 (488)
                      +.++.......|+|..... +.+......++++.+...+...       +..-+..+|       +++.|..-      +
T Consensus       338 eDdvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~LRalNNFLMmWIPm~N  417 (619)
T 3c2g_A          338 DDEVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCLRTLNNFLMMWIPTPN  417 (619)
T ss_dssp             CHHHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHGGGSCCTT
T ss_pred             CcceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHHHHHhhheeEEEecCC
Confidence            9999999999999998877 5555566678888888776521       233334444       44444321      0


Q ss_pred             ------CchhHH---HHHHhCCHHHHHHhcCCCC------cchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcc
Q 011328          231 ------TNDKIQ---AVIEAGVCPRLVELLRHPS------PSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQ  295 (488)
Q Consensus       231 ------~~~~~~---~~~~~~~l~~L~~lL~~~~------~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~  295 (488)
                            .+...+   .+++.+++..|+.+|.-+.      -++|...++..--+.+ .+..-+     ++   ++...++
T Consensus       418 Gqr~~~G~~EqQQVckFIE~d~LKrLMtCLS~e~fDv~~LlELRSTILR~F~LvlR-TP~~Pk-----d~---~l~VtDd  488 (619)
T 3c2g_A          418 GETKTAGPNEKQQVCKFIEIDILKKLMSCLSCEGMDTPGLLELRSTILRSFILLLR-TPFVPK-----DG---VLNVIDE  488 (619)
T ss_dssp             SCCCCCCHHHHHHHHGGGSHHHHHHHHHHHHCCC-CCTTHHHHHHHHHHHHHHHHT-CTTSCC-----TT---GGGCCCT
T ss_pred             CccccCChHHHHHHHHHHHHHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHHhc-CCCCch-----hh---hccccch
Confidence                  111112   2344466777777775532      2455555555444443 221111     11   1111111


Q ss_pred             cch----hhHHHHHHHHHHHHhc-CCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCC
Q 011328          296 NYK----KSIKKEACWTISNITA-GNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQG  370 (488)
Q Consensus       296 ~~~----~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~  370 (488)
                      -..    ..+..+-+|+.+.=.. ...+..+.+++. .+..|+.++..-..+.  +.+..+..                 
T Consensus       489 ~rk~NLvGHIciA~sWa~~Q~tNertqdTkqQLiER-~fSLL~~LmEQc~~E~--qVAh~~Ys-----------------  548 (619)
T 3c2g_A          489 NRKENLIGHICAAYSWVFRQPNNTRTQSTKQQLVER-TISLLLVLMEQCGAEK--EVAQYSYS-----------------  548 (619)
T ss_dssp             TTCCCHHHHHHHHHHHHHHSCCCTTTHHHHHHHHHH-HHHHHHHHHHHTTCHH--HHHHTTTT-----------------
T ss_pred             hhhhhhHHHHHHHHHHhhcCccccchhhHHHHHHHH-HHHHHHHHHHHhhhHH--HHHhheee-----------------
Confidence            101    1223333444443322 234555555553 5556666655432221  11221111                 


Q ss_pred             ChHHHHhhcCCC--CHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHH
Q 011328          371 CIKPLCDLLNCP--DPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKIL  448 (488)
Q Consensus       371 ~i~~L~~ll~~~--~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~~~~~v~~~a~~~l  448 (488)
                       ++.=.++++..  .|.....++..=..+++.++.....            -.  ---.-++-+.++.|+++.+.|..++
T Consensus       549 -IsCPLnlLn~nQ~KP~FI~NVL~VcDKILeHcP~~Ad~------------W~--i~r~tle~l~NHsNsDIa~aasSLL  613 (619)
T 3c2g_A          549 -IDCPLNLLNGNQVKPTFIHNVLVVCDKILEHCPTRADI------------WT--IDRPMLEGLTNHRNSDIAKAANSLL  613 (619)
T ss_dssp             -SCCGGGGGSSCCCCHHHHHHHHHHHHHHHHHCTTHHHH------------SC--CCHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred             -ccCchhhhcccccChHHHHHHHHHHHHHHHhCcchhcc------------ce--echHHHHHHhcCCCchHHHHHHHHH
Confidence             22223556543  3556666666666666655432110            00  0023356677999999999999988


Q ss_pred             HHh
Q 011328          449 ETY  451 (488)
Q Consensus       449 ~~~  451 (488)
                      .++
T Consensus       614 ~rf  616 (619)
T 3c2g_A          614 SRF  616 (619)
T ss_dssp             TTS
T ss_pred             HhC
Confidence            876

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5

Probab=96.93  E-value=0.00044  Score=60.40  Aligned_cols=64  Identities=13%  Similarity=0.020  Sum_probs=39.5

Q ss_pred             HHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCC
Q 011328           37 AGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHG  116 (488)
Q Consensus        37 ~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g  116 (488)
                      .+++++++.++..++..+.                   ...+..++++++ +.||..++..+   .              
T Consensus        57 ~ll~d~~~~VR~~AA~~l~-------------------~~~l~~L~~D~~-~~VR~~aA~~L---~--------------   99 (244)
T 1lrv_A           57 QYLADPFWERRAIAVRYSP-------------------VEALTPLIRDSD-EVVRRAVAYRL---P--------------   99 (244)
T ss_dssp             GGTTCSSHHHHHHHHTTSC-------------------GGGGGGGTTCSS-HHHHHHHHTTS---C--------------
T ss_pred             HHhcCCCHHHHHHHHHhCC-------------------HHHHHHHccCcC-HHHHHHHHHHC---C--------------
Confidence            4456788999988877431                   123556667777 77777777532   0              


Q ss_pred             CHHHHHHhhCCCCHHHHHHHHH
Q 011328          117 AVPIFVRLLSSPTDDVREQAVW  138 (488)
Q Consensus       117 ~i~~L~~~L~~~~~~v~~~a~~  138 (488)
                       .+.|..+++++++.+|..++.
T Consensus       100 -~~~L~~ll~D~d~~VR~~aA~  120 (244)
T 1lrv_A          100 -REQLSALMFDEDREVRITVAD  120 (244)
T ss_dssp             -SGGGGGTTTCSCHHHHHHHHH
T ss_pred             -HHHHHHHHcCCCHHHHHHHHH
Confidence             134555666677777766665

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5

Probab=96.92  E-value=0.00059  Score=59.61  Aligned_cols=88  Identities=17%  Similarity=0.069  Sum_probs=57.3

Q ss_pred             HhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCC
Q 011328           80 EFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGA  159 (488)
Q Consensus        80 ~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~  159 (488)
                      .++.+++ +.+|..++..+                  ....+..+++++++.+|..++..+.                  
T Consensus        57 ~ll~d~~-~~VR~~AA~~l------------------~~~~l~~L~~D~~~~VR~~aA~~L~------------------   99 (244)
T 1lrv_A           57 QYLADPF-WERRAIAVRYS------------------PVEALTPLIRDSDEVVRRAVAYRLP------------------   99 (244)
T ss_dssp             GGTTCSS-HHHHHHHHTTS------------------CGGGGGGGTTCSSHHHHHHHHTTSC------------------
T ss_pred             HHhcCCC-HHHHHHHHHhC------------------CHHHHHHHccCcCHHHHHHHHHHCC------------------
Confidence            5567777 89999988843                  1234677888999999999886421                  


Q ss_pred             hHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHH
Q 011328          160 LMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACW  222 (488)
Q Consensus       160 l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~  222 (488)
                      ...+..++ .+++..|+..++..+   .              .+.+..++++++..|+..+..
T Consensus       100 ~~~L~~ll-~D~d~~VR~~aA~~l---~--------------~~~L~~L~~D~d~~VR~~aA~  144 (244)
T 1lrv_A          100 REQLSALM-FDEDREVRITVADRL---P--------------LEQLEQMAADRDYLVRAYVVQ  144 (244)
T ss_dssp             SGGGGGTT-TCSCHHHHHHHHHHS---C--------------TGGGGGGTTCSSHHHHHHHHH
T ss_pred             HHHHHHHH-cCCCHHHHHHHHHhC---C--------------HHHHHHHHcCCCHHHHHHHHH
Confidence            02233444 677777877777632   1              012445566777777777765

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=96.87  E-value=0.3  Score=46.15  Aligned_cols=291  Identities=12%  Similarity=0.051  Sum_probs=167.0

Q ss_pred             CCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHH
Q 011328           85 DDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLL  164 (488)
Q Consensus        85 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~  164 (488)
                      ++ +..+.-|+..|......-|+..+.-     +..++.++++++..+|..|++.|..+|.+ . ....     +...|.
T Consensus        40 g~-~k~K~LaaQ~I~kffk~FP~l~~~A-----i~a~lDLcEDed~~IR~qaik~Lp~~ck~-~-~i~k-----iaDvL~  106 (507)
T 3u0r_A           40 GG-TKEKRLAAQFIPKFFKHFPELADSA-----INAQLDLCEDEDVSIRRQAIKELPQFATG-E-NLPR-----VADILT  106 (507)
T ss_dssp             SC-HHHHHHHHHHHHHHGGGCGGGHHHH-----HHHHHHHHTCSSHHHHHHHHHHGGGGCCT-T-CHHH-----HHHHHH
T ss_pred             CC-HHHHHHHHHHHHHHHhhChhhHHHH-----HHHHHHHHhcccHHHHHHHHHhhHHHhhh-h-hhhh-----HHHHHH
Confidence            34 7999999999999999888877754     78999999999999999999999999987 3 2222     356788


Q ss_pred             HHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccC-CchhHHHHHHhCC
Q 011328          165 AQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDG-TNDKIQAVIEAGV  243 (488)
Q Consensus       165 ~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~-~~~~~~~~~~~~~  243 (488)
                      ++| +..++.-...+-.+|..+...++       .+.+..+...+.++++.+|+.++..|..-... ..+....-++.-+
T Consensus       107 QlL-qtdd~~E~~~V~~sL~sllk~Dp-------k~tl~~lf~~i~~~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i  178 (507)
T 3u0r_A          107 QLL-QTDDSAEFNLVNNALLSIFKMDA-------KGTLGGLFSQILQGEDIVRERAIKFLSTKLKTLPDEVLTKEVEELI  178 (507)
T ss_dssp             HHT-TCCCHHHHHHHHHHHHHHHHHCH-------HHHHHHHHHHHHHSCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHH
T ss_pred             HHH-hccchHHHHHHHHHHHHHHhcCh-------HHHHHHHHHHHcccchHHHHHHHHHHHHHHhhcchhhccHHHHHHH
Confidence            888 56666666666677776665431       34555666666667899999999888653321 1111112222234


Q ss_pred             HHHHHHhcCCCCcchHhHHHHHHhHhhcCCc-hhhHHHhhCCChHHHHHHh------cccchhhHHHHHHHHHHHH----
Q 011328          244 CPRLVELLRHPSPSVLIPALRTVGNIVTGDD-MQTQCIINHQALPCLLDLL------TQNYKKSIKKEACWTISNI----  312 (488)
Q Consensus       244 l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~~~~L~~lL------~~~~~~~v~~~a~~~L~nl----  312 (488)
                      +..+.+.|.+-...--...+.+|..+-.... ...+.     +++.+....      ... +.+.-.....++..-    
T Consensus       179 ~~~ikK~L~DVT~~EF~L~m~lL~~lkl~~t~~g~qe-----Lv~ii~eQa~L~~~f~~s-D~e~vdRlI~C~~~ALP~F  252 (507)
T 3u0r_A          179 LTESKKVLEDVTGEEFVLFMKILSGLKSLQTVSGRQQ-----LVELVAEQADLEQTFNPS-DPDCVDRLLQCTRQAVPLF  252 (507)
T ss_dssp             HHHHHHHTTSCCHHHHHHHHHHHHTSGGGSSHHHHHH-----HHHHHHHHHTTTSCCCSS-CHHHHHHHHHHHHHHGGGC
T ss_pred             HHHHHHHhccccHHHHHHHHHHHHhcccccCchHHHH-----HHHHHHHHHhccCCCCCc-CHHHHHHHHHHHHHHHHHh
Confidence            4556666755443333444555554443222 11111     223333332      112 333333333333222    


Q ss_pred             hc--CCHHHHHHHHHcCChHHHHHHHhcC-ChhHHHHHHHHHHHhccCCC-HHHHHHHHHCCChHHHHhhcCCCC-----
Q 011328          313 TA--GNVNQIQAIIEAGIIGPLVNLLLNA-EFEIKKEAAWAISNATSGGS-NEQIKFLVSQGCIKPLCDLLNCPD-----  383 (488)
Q Consensus       313 ~~--~~~~~~~~l~~~~~l~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~~-~~~~~~l~~~~~i~~L~~ll~~~~-----  383 (488)
                      +.  ++......+.+ +++|.+-.+-... .++.+...+.+++.++...+ .+.....+. .+...|..++-.+.     
T Consensus       253 S~~v~StkFv~y~~~-kIlP~l~~L~e~~~~~~~kL~LLK~lAE~s~~~~~~e~a~~~l~-~iy~~L~~ymP~~p~~~~~  330 (507)
T 3u0r_A          253 SKNVHSTRFVTYFCE-QVLPNLGTLTTPVEGLDIQLEVLKLLAEMSSFCGDMEKLETNLR-KLFDKLLEYMPLPPEEAEN  330 (507)
T ss_dssp             BTTBCCHHHHHHHHH-HTGGGTTCCCCC--CCCHHHHHHHHHHHHHTTCCCCTTHHHHHH-HHHHHHHTTSCCCC-----
T ss_pred             ccCCChHHHHHHHHH-hhccchhhccccccchHHHHHHHHHHHHHccCCCccchHHHHHH-HHHHHHHHHCCCCcccccc
Confidence            22  34454455544 4777544332221 23478888999999987765 232222221 13444444443221     


Q ss_pred             --------H----HHHHHHHHHHHHHHHhhhhh
Q 011328          384 --------P----RIVTVCLEGLENILKAGEAE  404 (488)
Q Consensus       384 --------~----~v~~~al~~L~~l~~~~~~~  404 (488)
                              +    .-++..+.+++.+....+..
T Consensus       331 ~~~~~~~~p~l~fS~vECLLy~fH~L~~k~P~~  363 (507)
T 3u0r_A          331 GENAGNEEPKLQFSYVECLLYSFHQLGRKLPDF  363 (507)
T ss_dssp             ---------CCCHHHHHHHHHHHHHHHTTCTHH
T ss_pred             cccccccCcccchhHHHHHHHHHHHHhhhChhh
Confidence                    1    23466777778777655443

>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}

Probab=96.85  E-value=0.045  Score=47.00  Aligned_cols=160  Identities=11%  Similarity=0.175  Sum_probs=114.3

Q ss_pred             hccHHHHHHHhcCCC-----------HHHHH-HHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCC----ChhHHH
Q 011328           29 LESLPAMVAGVWSDD-----------RNIQL-DATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDD----FPQLQF   92 (488)
Q Consensus        29 ~~~i~~l~~~L~s~~-----------~~~~~-~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~----~~~v~~   92 (488)
                      .|.+..|++.+-+-.           ..-|. .|+..|..+++ + ++....+++..+.-.|..+|+..+    .+.+|.
T Consensus        43 ~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQcvAs-h-petr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRL  120 (268)
T 2fv2_A           43 FGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVAS-H-PETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRL  120 (268)
T ss_dssp             TTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHHHHH-C-TTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHHHHc-C-cchhhHHHHccchHHhhhhhccccCCCcchhhhh
Confidence            366666666553221           22233 44555556665 3 688899999988888888886544    256899


Q ss_pred             HHHHHHHHhcC-CCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHH-------HhcCChHHHH
Q 011328           93 EAAWALTNIAS-GTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLV-------LSNGALMPLL  164 (488)
Q Consensus        93 ~a~~~L~~l~~-~~~~~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~-------~~~~~l~~L~  164 (488)
                      .++.+++.+.+ ++++....+.+.+++|..++.++.+++-.+..|..++..+..++.+.....       .-...+..++
T Consensus       121 tsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV  200 (268)
T 2fv2_A          121 TSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMV  200 (268)
T ss_dssp             HHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHH
Confidence            99999999987 567888888999999999999999999999999999988875544322111       1112455555


Q ss_pred             HHhcccccHhHHHHHHHHHHHhhcCC
Q 011328          165 AQFNEHAKLSMLRNATWTLSNFCRGK  190 (488)
Q Consensus       165 ~ll~~~~~~~v~~~a~~~L~~l~~~~  190 (488)
                      ..+.+..++.+.++++.+-..|+.+.
T Consensus       201 ~~l~~~ps~RLLKhiircYlRLsdn~  226 (268)
T 2fv2_A          201 LQLSKEPSARLLKHVVRCYLRLSDNP  226 (268)
T ss_dssp             HHTTTSCCHHHHHHHHHHHHHHTTSH
T ss_pred             HHHhcCCChHHHHHHHHHHHHHhcCH
Confidence            55656778888888888888888764

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=96.78  E-value=0.092  Score=49.56  Aligned_cols=149  Identities=17%  Similarity=0.119  Sum_probs=104.4

Q ss_pred             CCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHH
Q 011328          128 PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALER  207 (488)
Q Consensus       128 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~  207 (488)
                      +++..+..|+..+.....+-|+.++.     ++..++.++ .+.|..+|..|+..|..+|.+      .....+...|.+
T Consensus        40 g~~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLc-EDed~~IR~qaik~Lp~~ck~------~~i~kiaDvL~Q  107 (507)
T 3u0r_A           40 GGTKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLC-EDEDVSIRRQAIKELPQFATG------ENLPRVADILTQ  107 (507)
T ss_dssp             SCHHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHH-TCSSHHHHHHHHHHGGGGCCT------TCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHH-hcccHHHHHHHHHhhHHHhhh------hhhhhHHHHHHH
Confidence            57899999999999999888876655     567889999 888999999999999999987      336788899999


Q ss_pred             hhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcC-CchhhHHHhhCCCh
Q 011328          208 LIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTG-DDMQTQCIINHQAL  286 (488)
Q Consensus       208 ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~~  286 (488)
                      +|.++++.-...+-.+|..+...++.        +.+..+...+..+++.+|+.++..|..=... .......-.+.-+.
T Consensus       108 lLqtdd~~E~~~V~~sL~sllk~Dpk--------~tl~~lf~~i~~~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i~  179 (507)
T 3u0r_A          108 LLQTDDSAEFNLVNNALLSIFKMDAK--------GTLGGLFSQILQGEDIVRERAIKFLSTKLKTLPDEVLTKEVEELIL  179 (507)
T ss_dssp             HTTCCCHHHHHHHHHHHHHHHHHCHH--------HHHHHHHHHHHHSCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHH
T ss_pred             HHhccchHHHHHHHHHHHHHHhcChH--------HHHHHHHHHHcccchHHHHHHHHHHHHHHhhcchhhccHHHHHHHH
Confidence            99998877777777777776654432        2233444444445788999888887554332 11111122233345


Q ss_pred             HHHHHHhccc
Q 011328          287 PCLLDLLTQN  296 (488)
Q Consensus       287 ~~L~~lL~~~  296 (488)
                      ..+.++|++-
T Consensus       180 ~~ikK~L~DV  189 (507)
T 3u0r_A          180 TESKKVLEDV  189 (507)
T ss_dssp             HHHHHHTTSC
T ss_pred             HHHHHHhccc
Confidence            5566666544

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}

Probab=96.34  E-value=0.035  Score=47.23  Aligned_cols=143  Identities=10%  Similarity=0.042  Sum_probs=101.9

Q ss_pred             HHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHH-hhccCChhHHHHHHHHHHHhcc-CCchhHHHHH
Q 011328          162 PLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALER-LIHSNDDEVLTDACWALSYLSD-GTNDKIQAVI  239 (488)
Q Consensus       162 ~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~-ll~~~~~~v~~~al~~L~~l~~-~~~~~~~~~~  239 (488)
                      .+...|.++...+++..|+.+|..+ .        .....++.+.. +..+++..|++.+..++..++. ..++      
T Consensus        74 ~la~~L~~~~~deVR~~Av~lLg~~-~--------~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe------  138 (240)
T 3l9t_A           74 KLAFLAYQSDVYQVRMYAVFLFGYL-S--------KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK------  138 (240)
T ss_dssp             HHHHHHHTCSSHHHHHHHHHHHHHT-T--------TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT------
T ss_pred             HHHHHHHhCcchHHHHHHHHHHHhc-c--------CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH------
Confidence            4555555677779999999988877 2        22457777777 5556789999999999998874 3332      


Q ss_pred             HhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHH
Q 011328          240 EAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQ  319 (488)
Q Consensus       240 ~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~  319 (488)
                        ..++.+.....++++.+|+.|...+.-.+.. +...  .....+++.+-.+..++ +.-||+...|.|..++..+|+-
T Consensus       139 --~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~-~~~k--~dp~~ll~iL~~L~~D~-s~yVrKSVan~LrD~SK~~Pd~  212 (240)
T 3l9t_A          139 --KALPIIDEWLKSSNLHTRRAATEGLRIWTNR-PYFK--ENPNEAIRRIADLKEDV-SEYVRKSVGNALRDISKKFPDL  212 (240)
T ss_dssp             --TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGS-TTTT--TCHHHHHHHHHTTTTCS-CHHHHHHHHHHHHHHHTTCHHH
T ss_pred             --HHHHHHHHHhcCCCHHHHHHHHHhhHHHhcc-chhh--cCHHHHHHHHHHhcCCh-HHHHHHHHHHHHHHHhhhCHHH
Confidence              2567788899999999999998877554432 1110  00112455555555666 8999999999999999988987


Q ss_pred             HHHHHH
Q 011328          320 IQAIIE  325 (488)
Q Consensus       320 ~~~l~~  325 (488)
                      ...+++
T Consensus       213 V~~~~~  218 (240)
T 3l9t_A          213 VKIELK  218 (240)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            666655

>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}

Probab=96.24  E-value=0.034  Score=48.26  Aligned_cols=141  Identities=15%  Similarity=0.094  Sum_probs=98.2

Q ss_pred             hhhHHHHHHHHHHHHhcCCHHHHHHHHH-cCChHHHHHHHhcCChhHHHHHHHHHHHhccCCC----HH-HHH------H
Q 011328          298 KKSIKKEACWTISNITAGNVNQIQAIIE-AGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGS----NE-QIK------F  365 (488)
Q Consensus       298 ~~~v~~~a~~~L~nl~~~~~~~~~~l~~-~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~----~~-~~~------~  365 (488)
                      +......++.+|..+... ......++. .+.+..+...+.++++.++..++..|..++...+    .+ ...      .
T Consensus        67 ~~~~~~~~l~CLkalmn~-~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~  145 (233)
T 2f31_A           67 DSRNQHEIIRCLKAFMNN-KFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAE  145 (233)
T ss_dssp             HHHHHHHHHHHHHHHTSS-HHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhCC-hHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHH
Confidence            456677888888888764 555566654 5578888888888899999999988888776542    11 111      1


Q ss_pred             HHHCCChHHHHhhcC-CCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHH
Q 011328          366 LVSQGCIKPLCDLLN-CPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKA  444 (488)
Q Consensus       366 l~~~~~i~~L~~ll~-~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~~~~~v~~~a  444 (488)
                      ..+..-...+++.++ ..+.+.+..++..+..++...+....      .-..+..|...|..+.+..+...+++++..+-
T Consensus       146 ~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~------R~~lR~ef~~~Gl~~il~~l~~~~~~~L~~Qi  219 (233)
T 2f31_A          146 MDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDF------RVHIRSELMRLGLHQVLQELREIENEDMKVQL  219 (233)
T ss_dssp             HHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHH------HHHHHHHHHHTTHHHHHHHHHHCCCHHHHHHH
T ss_pred             hCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHH------HHHHHHHHHHCChHHHHHHHhccCCHHHHHHH
Confidence            123345667787777 45567788888888877766543321      22357778899999999999988888886553


Q ss_pred             H
Q 011328          445 V  445 (488)
Q Consensus       445 ~  445 (488)
                      .
T Consensus       220 ~  220 (233)
T 2f31_A          220 C  220 (233)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}

Probab=96.22  E-value=0.14  Score=43.56  Aligned_cols=145  Identities=17%  Similarity=0.082  Sum_probs=104.3

Q ss_pred             CHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHH-hhCCCCHHHHHHHHHHHhhhhC-CCchhH
Q 011328           74 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVR-LLSSPTDDVREQAVWALGNVAG-DSPKCR  151 (488)
Q Consensus        74 ~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~-~L~~~~~~v~~~a~~~L~~l~~-~~~~~~  151 (488)
                      .++....+.+++. .++|..|+..|+.. ...         ...++.+.. +-..++..|++.+..++..++. ..++  
T Consensus        72 ~~~la~~L~~~~~-deVR~~Av~lLg~~-~~~---------~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe--  138 (240)
T 3l9t_A           72 IKKLAFLAYQSDV-YQVRMYAVFLFGYL-SKD---------KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK--  138 (240)
T ss_dssp             HHHHHHHHHTCSS-HHHHHHHHHHHHHT-TTS---------HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT--
T ss_pred             HHHHHHHHHhCcc-hHHHHHHHHHHHhc-cCc---------HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH--
Confidence            3445556667777 89999999998888 311         124666666 5556899999999999999984 3332  


Q ss_pred             HHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCC
Q 011328          152 DLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGT  231 (488)
Q Consensus       152 ~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~  231 (488)
                            ..++.+.... .+++..+++.|+..+.--+.. + ........+++.+-.+..+++.-|+..+.+.|..++..+
T Consensus       139 ------~~l~~~~~W~-~d~n~~VRR~Ase~~rpW~~~-~-~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~  209 (240)
T 3l9t_A          139 ------KALPIIDEWL-KSSNLHTRRAATEGLRIWTNR-P-YFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKF  209 (240)
T ss_dssp             ------TTHHHHHHHH-HCSSHHHHHHHHHHTCSGGGS-T-TTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTC
T ss_pred             ------HHHHHHHHHh-cCCCHHHHHHHHHhhHHHhcc-c-hhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhC
Confidence                  1455566666 888999999999877554432 1 112233457777777888889999999999999999998


Q ss_pred             chhHHHHHH
Q 011328          232 NDKIQAVIE  240 (488)
Q Consensus       232 ~~~~~~~~~  240 (488)
                      ++....+++
T Consensus       210 Pd~V~~~~~  218 (240)
T 3l9t_A          210 PDLVKIELK  218 (240)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            877665554

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}

Probab=96.07  E-value=2  Score=46.94  Aligned_cols=299  Identities=8%  Similarity=0.036  Sum_probs=168.4

Q ss_pred             HHHHHHHhcCC--CHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhc-CCCChhHHHHHHHHHHHhcCC----
Q 011328           32 LPAMVAGVWSD--DRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLS-RDDFPQLQFEAAWALTNIASG----  104 (488)
Q Consensus        32 i~~l~~~L~s~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~-~~~~~~v~~~a~~~L~~l~~~----  104 (488)
                      +..+++.+.++  +...|.+|-..|.++-...           .....+...|. .+.++.+|..|+..|.+....    
T Consensus        13 l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~p-----------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~   81 (1204)
T 3a6p_A           13 LVKAVTVMMDPNSTQRYRLEALKFCEEFKEKC-----------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNG   81 (1204)
T ss_dssp             HHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHC-----------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGG
T ss_pred             HHHHHHHHhCCCCChHHHHHHHHHHHHHHhCc-----------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhccc
Confidence            44455444444  6778888888888754321           23344444343 333389999999999887642    


Q ss_pred             -CchhhHHHHhCCCHHHHHHhhCC---CCHHHHHHHHHHHhhhhCCC-chhHHHHHhcCChHHHHHHhcccccHhHHHHH
Q 011328          105 -TSENTRVVIDHGAVPIFVRLLSS---PTDDVREQAVWALGNVAGDS-PKCRDLVLSNGALMPLLAQFNEHAKLSMLRNA  179 (488)
Q Consensus       105 -~~~~~~~~~~~g~i~~L~~~L~~---~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a  179 (488)
                       .++.+..+ +..+++.+......   ....++...+.+++.++... +...     .+.++.++..+ .. ++.....+
T Consensus        82 l~~e~k~~I-r~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~W-----p~ll~~L~~~~-~~-~~~~~e~~  153 (1204)
T 3a6p_A           82 MSRLEKVYL-KNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQHW-----PDMLIELDTLS-KQ-GETQTELV  153 (1204)
T ss_dssp             SCHHHHHHH-HHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTC-----TTHHHHHHHHH-HT-CHHHHHHH
T ss_pred             CCHHHHHHH-HHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcccc-----hHHHHHHHHHh-cC-CHHHHHHH
Confidence             23333333 33445554443221   46889999999999887432 1100     13566777777 32 44556778


Q ss_pred             HHHHHHhhcCC---CCCChhh-----------hhchHHHHHHhhcc-------------------CChhHHHHHHHHHHH
Q 011328          180 TWTLSNFCRGK---PQPLFEQ-----------TRPALPALERLIHS-------------------NDDEVLTDACWALSY  226 (488)
Q Consensus       180 ~~~L~~l~~~~---~~~~~~~-----------~~~~~~~l~~ll~~-------------------~~~~v~~~al~~L~~  226 (488)
                      +.+|..++...   .......           ...+++.+..++.+                   .+..+...++.++.+
T Consensus       154 L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~  233 (1204)
T 3a6p_A          154 MFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAG  233 (1204)
T ss_dssp             HHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHH
Confidence            88888876542   1111100           11334444444432                   124567778888877


Q ss_pred             hccCCchhHHHHHHhC--CHHHHHHhcCCCCcchHhHHHHHHhHhhcCCc--hhhHHHhhC---CChHHHHHHhc-----
Q 011328          227 LSDGTNDKIQAVIEAG--VCPRLVELLRHPSPSVLIPALRTVGNIVTGDD--MQTQCIINH---QALPCLLDLLT-----  294 (488)
Q Consensus       227 l~~~~~~~~~~~~~~~--~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~--~~~~~~~~~---~~~~~L~~lL~-----  294 (488)
                      ....-+.  ..+.+..  +++.+..++.  +++++..|+.+|..++....  .....++..   ..+..++..+.     
T Consensus       234 ~l~Wi~~--~~i~~~~~~ll~~l~~~l~--~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~  309 (1204)
T 3a6p_A          234 YIDWVSM--SHITAENCKLLEILCLLLN--EQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGG  309 (1204)
T ss_dssp             TTTTSCH--HHHHTTTSHHHHHHHHGGG--CTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCC
T ss_pred             HHhccCH--HHHHhccchHHHHHHHHcC--CHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCC
Confidence            6654331  2233432  6777776665  46799999999999997542  222222221   11233444431     


Q ss_pred             --ccchhhHHHHHHHHHHHHhcCCHHHHHHHHH-----------cCChHHHHHHHhcCChhHHHHHHHHHHHhccC
Q 011328          295 --QNYKKSIKKEACWTISNITAGNVNQIQAIIE-----------AGIIGPLVNLLLNAEFEIKKEAAWAISNATSG  357 (488)
Q Consensus       295 --~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~-----------~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~  357 (488)
                        +..+.++.+..+..+..+...    ...++.           .++++.++.+..+++..+-..++.....+...
T Consensus       310 ~~~e~d~e~~k~l~~ll~~lg~~----l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~  381 (1204)
T 3a6p_A          310 GLVEKHYVFLKRLCQVLCALGNQ----LCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRH  381 (1204)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHHHH----HHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSC
T ss_pred             CCccHHHHHHHHHHHHHHHHHHH----HHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhc
Confidence              222456677777777776521    222221           13577888888888877777777766656544

>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*

Probab=95.96  E-value=0.082  Score=47.38  Aligned_cols=162  Identities=14%  Similarity=0.172  Sum_probs=113.5

Q ss_pred             HHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccc
Q 011328          218 TDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNY  297 (488)
Q Consensus       218 ~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~  297 (488)
                      ..+...| ++.-++++.++-+++.+++..+......++.++.++.+..|...+....-... - -...+|.++..+.-..
T Consensus       261 tR~FDLL-~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~t-~-L~e~LPFi~~~i~~h~  337 (619)
T 3c2g_A          261 IRTFDLL-GLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAKT-P-LENILPFLLRLIEIHP  337 (619)
T ss_dssp             HHHHHHH-HHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGTS-C-CTTHHHHHHHHHHHCC
T ss_pred             HHHHHHH-HHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhhc-c-ccccchHHHHHhccCC
Confidence            3344444 44455667788899999999999999999999999999999888764322111 1 1256788888776444


Q ss_pred             hhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC-------ChhHHH-------HHHHHHHHhcc------C
Q 011328          298 KKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA-------EFEIKK-------EAAWAISNATS------G  357 (488)
Q Consensus       298 ~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~-------~~~v~~-------~a~~aL~~l~~------~  357 (488)
                      +.++.......|+|...+.......-+.+|.++.|...+...       +..-++       ++++++.|+.-      +
T Consensus       338 eDdvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~LRalNNFLMmWIPm~N  417 (619)
T 3c2g_A          338 DDEVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCLRTLNNFLMMWIPTPN  417 (619)
T ss_dssp             CHHHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHGGGSCCTT
T ss_pred             CcceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHHHHHhhheeEEEecCC
Confidence            888999999999999998788777778899999999887643       222233       44444544431      1


Q ss_pred             C--------CHHHHHHHHHCCChHHHHhhcCCC
Q 011328          358 G--------SNEQIKFLVSQGCIKPLCDLLNCP  382 (488)
Q Consensus       358 ~--------~~~~~~~l~~~~~i~~L~~ll~~~  382 (488)
                      +        +.++...+++.++++.|+.+++-+
T Consensus       418 Gqr~~~G~~EqQQVckFIE~d~LKrLMtCLS~e  450 (619)
T 3c2g_A          418 GETKTAGPNEKQQVCKFIEIDILKKLMSCLSCE  450 (619)
T ss_dssp             SCCCCCCHHHHHHHHGGGSHHHHHHHHHHHHCC
T ss_pred             CccccCChHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            1        233445566667888888888743

>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}

Probab=95.60  E-value=0.66  Score=40.01  Aligned_cols=139  Identities=12%  Similarity=0.133  Sum_probs=88.2

Q ss_pred             HHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcC----C------CChhHHHHHHHHHHHhcCCCchhhHHHH-hCCCH
Q 011328           50 ATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSR----D------DFPQLQFEAAWALTNIASGTSENTRVVI-DHGAV  118 (488)
Q Consensus        50 a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~----~------~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~g~i  118 (488)
                      .+..|...+...+....+.+ ..+++..|++.|..    +      ...+.+..++.||..+.. +....+.++ ..+.+
T Consensus        21 ~L~~L~v~Lrt~~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn-~~~G~~~vl~~~~~i   98 (233)
T 2f31_A           21 CLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN-NKFGIKTMLETEEGI   98 (233)
T ss_dssp             HHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTS-SHHHHHHHHTSSSHH
T ss_pred             HHHHHhHhHhcCCcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhC-ChHHHHHHHcCcHHH
Confidence            34444444444434445666 46777778777642    1      125678889999999998 555555555 45788


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHhhhhCCCc-hh-HHHHH----------hcCChHHHHHHhcccccHhHHHHHHHHHHHh
Q 011328          119 PIFVRLLSSPTDDVREQAVWALGNVAGDSP-KC-RDLVL----------SNGALMPLLAQFNEHAKLSMLRNATWTLSNF  186 (488)
Q Consensus       119 ~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~-~~-~~~~~----------~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l  186 (488)
                      ..+...+.++++.++..++..|..+|..+. +. ...+.          +..-..+++..+..+.+.+.+..++..+-.+
T Consensus        99 ~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~l  178 (233)
T 2f31_A           99 LLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINAL  178 (233)
T ss_dssp             HHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHH
Confidence            999999999999999999999998886553 11 22221          2234555666664444555555555555555


Q ss_pred             hcCC
Q 011328          187 CRGK  190 (488)
Q Consensus       187 ~~~~  190 (488)
                      ....
T Consensus       179 i~~~  182 (233)
T 2f31_A          179 ITPA  182 (233)
T ss_dssp             HTTC
T ss_pred             HCCC
Confidence            5554

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}

Probab=95.43  E-value=0.7  Score=50.60  Aligned_cols=283  Identities=11%  Similarity=0.083  Sum_probs=157.9

Q ss_pred             hhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhh--CCCCHHHHHHHHHHHhhhhCC-----CchhHHHHHhcCCh
Q 011328           88 PQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLL--SSPTDDVREQAVWALGNVAGD-----SPKCRDLVLSNGAL  160 (488)
Q Consensus        88 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L--~~~~~~v~~~a~~~L~~l~~~-----~~~~~~~~~~~~~l  160 (488)
                      ++.|..|-..|..+-. ++         .....+...|  .+.+..+|..|+.+|.+....     +++.+..+.     
T Consensus        27 ~~~r~~Ae~~L~~~~~-~p---------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir-----   91 (1204)
T 3a6p_A           27 QRYRLEALKFCEEFKE-KC---------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYLK-----   91 (1204)
T ss_dssp             HHHHHHHHHHHHHHHH-HC---------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHH-----
T ss_pred             hHHHHHHHHHHHHHHh-Cc---------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHHH-----
Confidence            6778888888877654 22         2334444433  346889999999999987632     222222222     


Q ss_pred             HHHHHHhccc------ccHhHHHHHHHHHHHhhcCC-CCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccC---
Q 011328          161 MPLLAQFNEH------AKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDG---  230 (488)
Q Consensus       161 ~~L~~ll~~~------~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~---  230 (488)
                      ..++..+...      ....++..++.++..++... +...    ..+++.++.++.+ +......++.+|..+++.   
T Consensus        92 ~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~W----p~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Eev~~  166 (1204)
T 3a6p_A           92 NSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQHW----PDMLIELDTLSKQ-GETQTELVMFILLRLAEDVVT  166 (1204)
T ss_dssp             HHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTC----TTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcccc----hHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHcc
Confidence            2344444222      35678888999999988764 4333    4677888888865 556677788888877642   


Q ss_pred             C----chhHHH---HHHh---CCHHHHHHhcCC-------------------CCcchHhHHHHHHhHhhcCCchhhHHHh
Q 011328          231 T----NDKIQA---VIEA---GVCPRLVELLRH-------------------PSPSVLIPALRTVGNIVTGDDMQTQCII  281 (488)
Q Consensus       231 ~----~~~~~~---~~~~---~~l~~L~~lL~~-------------------~~~~v~~~a~~~L~~l~~~~~~~~~~~~  281 (488)
                      .    ..+...   .+..   .++..+..++..                   ++..++..++.++.+...--+  ...+.
T Consensus       167 ~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~--~~~i~  244 (1204)
T 3a6p_A          167 FQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVS--MSHIT  244 (1204)
T ss_dssp             SCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSC--HHHHH
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccC--HHHHH
Confidence            1    111111   1111   222333333322                   123456677777776654222  12223


Q ss_pred             hCC--ChHHHHHHhcccchhhHHHHHHHHHHHHhcCC--HHHHHHHHHc---CChHHHHHHHh--------cCChhHHHH
Q 011328          282 NHQ--ALPCLLDLLTQNYKKSIKKEACWTISNITAGN--VNQIQAIIEA---GIIGPLVNLLL--------NAEFEIKKE  346 (488)
Q Consensus       282 ~~~--~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~--~~~~~~l~~~---~~l~~L~~ll~--------~~~~~v~~~  346 (488)
                      +..  +++.+...+.   +++++..|+.+|..++...  ++....++..   ..+..++....        +.+.++.+.
T Consensus       245 ~~~~~ll~~l~~~l~---~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~  321 (1204)
T 3a6p_A          245 AENCKLLEILCLLLN---EQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKR  321 (1204)
T ss_dssp             TTTSHHHHHHHHGGG---CTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHH
T ss_pred             hccchHHHHHHHHcC---CHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHH
Confidence            332  6666776654   4578999999999999732  4433333321   01234444442        114566667


Q ss_pred             HHHHHHHhccCCCHHHHHHHHHC-----------CChHHHHhhcCCCCHHHHHHHHHHHHHHHHh
Q 011328          347 AAWAISNATSGGSNEQIKFLVSQ-----------GCIKPLCDLLNCPDPRIVTVCLEGLENILKA  400 (488)
Q Consensus       347 a~~aL~~l~~~~~~~~~~~l~~~-----------~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~  400 (488)
                      .+..+..+..    . ...++++           ++++.+..+..+++..+...++.....+++.
T Consensus       322 l~~ll~~lg~----~-l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~  381 (1204)
T 3a6p_A          322 LCQVLCALGN----Q-LCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRH  381 (1204)
T ss_dssp             HHHHHHHHHH----H-HHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHH----H-HHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhc
Confidence            7777766652    1 1112211           3466777777777766666666655555443

>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*

Probab=95.42  E-value=0.085  Score=49.41  Aligned_cols=161  Identities=17%  Similarity=0.143  Sum_probs=109.4

Q ss_pred             hhhHHHhhCCChHHHHHHhcc----------cchhhHHHHHHHHHHHHhcCCHHHHHHHHH-cCChHHHHHHHhcCChhH
Q 011328          275 MQTQCIINHQALPCLLDLLTQ----------NYKKSIKKEACWTISNITAGNVNQIQAIIE-AGIIGPLVNLLLNAEFEI  343 (488)
Q Consensus       275 ~~~~~~~~~~~~~~L~~lL~~----------~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~-~~~l~~L~~ll~~~~~~v  343 (488)
                      ...+.+. .+++..|+.+|..          ..+......++.+|..+... ......++. ...+..+...+.+..+.+
T Consensus       101 sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~-~~G~~~vl~~~~~i~~l~~~L~s~~~~~  178 (383)
T 3eg5_B          101 SWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNN-KFGIKTMLETEEGILLLVRAMDPAVPNM  178 (383)
T ss_dssp             HHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSS-HHHHHHHHTCSSHHHHHHHTCCTTSHHH
T ss_pred             HHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcc-hhhHHHHHcChHHHHHHHHHhCCCchHH
Confidence            3444444 4566667776632          11346677888999888765 455555554 567888999998889999


Q ss_pred             HHHHHHHHHHhccCCCHHH-HHH----------HHHCCChHHHHhhcCC-CCHHHHHHHHHHHHHHHHhhhhhhccCCCC
Q 011328          344 KKEAAWAISNATSGGSNEQ-IKF----------LVSQGCIKPLCDLLNC-PDPRIVTVCLEGLENILKAGEAEKNMGNTG  411 (488)
Q Consensus       344 ~~~a~~aL~~l~~~~~~~~-~~~----------l~~~~~i~~L~~ll~~-~~~~v~~~al~~L~~l~~~~~~~~~~~~~~  411 (488)
                      +..++..|..++....++. ...          ..+..-...+++.++. .+.+.+..++..+..++...+....     
T Consensus       179 ~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~-----  253 (383)
T 3eg5_B          179 MIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDF-----  253 (383)
T ss_dssp             HHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHH-----
T ss_pred             HHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHHH-----
Confidence            9999999988876543111 111          1234557778888886 5678888888888888776543321     


Q ss_pred             ccchHHHHHHhhccHHHHHHhhcCCCHHHHHH
Q 011328          412 GVNLFAQAIDDAEGLEKIENLQSHDNTEIYEK  443 (488)
Q Consensus       412 ~~~~~~~~l~~~g~~~~L~~l~~~~~~~v~~~  443 (488)
                       .-..+..|...|..+.+..+....++++...
T Consensus       254 -R~~lR~ef~~~Gl~~il~~lr~~~~~~L~~Q  284 (383)
T 3eg5_B          254 -RVHIRSELMRLGLHQVLQELREIENEDMKVQ  284 (383)
T ss_dssp             -HHHHHHHHHHTTHHHHHHHHTTSCCHHHHHH
T ss_pred             -HHHHHHHHHHCChHHHHHHHhcCCChhHHHH
Confidence             1225777889999999999888778877543

>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1

Probab=95.38  E-value=1.8  Score=46.62  Aligned_cols=160  Identities=13%  Similarity=0.114  Sum_probs=105.8

Q ss_pred             cHhHHHHHHHHHHHhhc----CCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHH
Q 011328          172 KLSMLRNATWTLSNFCR----GKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRL  247 (488)
Q Consensus       172 ~~~v~~~a~~~L~~l~~----~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L  247 (488)
                      ++.++..+..+++.+..    ..+.........+...+.+.+...+..-+..++.+|+|+...           ..++.|
T Consensus       408 ~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~p-----------~~l~~l  476 (1056)
T 1lsh_A          408 RPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQP-----------NSIKKI  476 (1056)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCG-----------GGHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCh-----------hHHHHH
Confidence            45666777777766653    333333334556666677777778888889999999998642           235566


Q ss_pred             HHhcCC-----C--CcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhc-ccchhhHHHHHHHHHHHHhcCCHHH
Q 011328          248 VELLRH-----P--SPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLT-QNYKKSIKKEACWTISNITAGNVNQ  319 (488)
Q Consensus       248 ~~lL~~-----~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~-~~~~~~v~~~a~~~L~nl~~~~~~~  319 (488)
                      .+++..     .  ...++..|+++|..++...+...        -+.++++.. ...+.++|..|+..|.... .+.. 
T Consensus       477 ~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v--------~~il~~i~~n~~e~~EvRiaA~~~Lm~t~-P~~~-  546 (1056)
T 1lsh_A          477 QRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKV--------QEIVLPIFLNVAIKSELRIRSCIVFFESK-PSVA-  546 (1056)
T ss_dssp             HTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHH--------HHHHHHHHHCTTSCHHHHHHHHHHHHHTC-CCHH-
T ss_pred             HHhhcCccccccccchHHHHHHHHHHHHhhhhchHHH--------HHHHHHHhcCCCCChHHHHHHHHHHHHHC-cCHH-
Confidence            666632     1  23577889999999987544332        355777773 2337889999988886432 2233 


Q ss_pred             HHHHHHcCChHHHHHHHhc-CChhHHHHHHHHHHHhccCCCH
Q 011328          320 IQAIIEAGIIGPLVNLLLN-AEFEIKKEAAWAISNATSGGSN  360 (488)
Q Consensus       320 ~~~l~~~~~l~~L~~ll~~-~~~~v~~~a~~aL~~l~~~~~~  360 (488)
                              .+..+...+.. ++..|.......|.+++....+
T Consensus       547 --------~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~~P  580 (1056)
T 1lsh_A          547 --------LVSMVAVRLRREPNLQVASFVYSQMRSLSRSSNP  580 (1056)
T ss_dssp             --------HHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCSG
T ss_pred             --------HHHHHHHHHhhCchHHHHHHHHHHHHHHHhcCCc
Confidence                    34445555655 5888999999999999887655

>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}

Probab=95.33  E-value=0.74  Score=41.41  Aligned_cols=173  Identities=12%  Similarity=0.065  Sum_probs=103.2

Q ss_pred             CHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHH----HHHHhhCC-CCHHHHHHHHHHHhhhhCCCc
Q 011328           74 VVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVP----IFVRLLSS-PTDDVREQAVWALGNVAGDSP  148 (488)
Q Consensus        74 ~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~----~L~~~L~~-~~~~v~~~a~~~L~~l~~~~~  148 (488)
                      .+..+.+++ .-. .+.+.-++..+.-.+. .+.....+.+.+.-.    .+...+.+ ..+.-+..++++++|+.....
T Consensus       104 ~l~~l~kil-~WP-~~~~fPvLDLlRl~~l-~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~  180 (304)
T 3ebb_A          104 QLQILWKAI-NCP-EDIVFPALDILRLSIK-HPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQA  180 (304)
T ss_dssp             HHHHHHHHH-TSC-TTTCHHHHHHHHHHTT-SHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHH
T ss_pred             HHHHHHHHH-cCC-HHhHHHHHHHHHHHHc-CccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCch
Confidence            345666666 333 4566777777777776 666666555432222    33344433 456678999999999987655


Q ss_pred             hhHHHHHhcCChHHHHHHhc---ccccHhHHHHHHHHHHHhhcCC-CCCChhhhhchHHHHHHhhcc-CChhHHHHHHHH
Q 011328          149 KCRDLVLSNGALMPLLAQFN---EHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPALPALERLIHS-NDDEVLTDACWA  223 (488)
Q Consensus       149 ~~~~~~~~~~~l~~L~~ll~---~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~~~l~~ll~~-~~~~v~~~al~~  223 (488)
                       .+..+..  ....++..+.   .+.+..++..++..+.|++-.. ..........++..+..+++. .|.+....++-+
T Consensus       181 -g~~~l~~--~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~EalyR~LvA  257 (304)
T 3ebb_A          181 -GQKLMMS--QRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLEATFRLLVA  257 (304)
T ss_dssp             -HHHHHHH--THHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred             -hHHHHHH--HHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHHHHHHHHHH
Confidence             4555543  2334444432   3456778888888888887543 111222233455555566653 588999999999


Q ss_pred             HHHhccCCchhHHHHHHh-CCHHHHHHhcCC
Q 011328          224 LSYLSDGTNDKIQAVIEA-GVCPRLVELLRH  253 (488)
Q Consensus       224 L~~l~~~~~~~~~~~~~~-~~l~~L~~lL~~  253 (488)
                      |+++...+.+..+ +.+. ++-..+-.....
T Consensus       258 LGtL~~~~~~~~~-lak~l~~~~~v~~~~~~  287 (304)
T 3ebb_A          258 LGTLISDDSNAVQ-LAKSLGVDSQIKKYSSV  287 (304)
T ss_dssp             HHHHHTTCHHHHH-HHHHTTHHHHGGGGGGC
T ss_pred             HHHHHhCChhHHH-HHHHcCHHHHHHHHHhC
Confidence            9999977654433 4433 443333333433

>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}

Probab=95.20  E-value=1.7  Score=39.09  Aligned_cols=185  Identities=16%  Similarity=0.130  Sum_probs=109.2

Q ss_pred             HHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCC----ChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHH
Q 011328          245 PRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQ----ALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQI  320 (488)
Q Consensus       245 ~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~----~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~  320 (488)
                      ..+.+++ +=..+.+..++..+..++. .+.....+.+.+    ++..+...+.++..+..+..++++++|+..+ +..+
T Consensus       106 ~~l~kil-~WP~~~~fPvLDLlRl~~l-~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~-~~g~  182 (304)
T 3ebb_A          106 QILWKAI-NCPEDIVFPALDILRLSIK-HPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVG-QAGQ  182 (304)
T ss_dssp             HHHHHHH-TSCTTTCHHHHHHHHHHTT-SHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGS-HHHH
T ss_pred             HHHHHHH-cCCHHhHHHHHHHHHHHHc-CccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCC-chhH
Confidence            4444444 2223455666666666554 232222222211    2233444444333556788999999999886 4444


Q ss_pred             HHHHH--cCChHHHHHHHhcCChhHHHHHHHHHHHhccCC----CHHHHHHHHHCCChHHHHhhcC-CCCHHHHHHHHHH
Q 011328          321 QAIIE--AGIIGPLVNLLLNAEFEIKKEAAWAISNATSGG----SNEQIKFLVSQGCIKPLCDLLN-CPDPRIVTVCLEG  393 (488)
Q Consensus       321 ~~l~~--~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~----~~~~~~~l~~~~~i~~L~~ll~-~~~~~v~~~al~~  393 (488)
                      +.+..  ..+++.+...+.+++..++..++..+.|++...    +.+....     ++..+..+++ ..+.+...+++-+
T Consensus       183 ~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~-----ll~~l~~il~~~~d~EalyR~LvA  257 (304)
T 3ebb_A          183 KLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQ-----CLSLISTILEVVQDLEATFRLLVA  257 (304)
T ss_dssp             HHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHH-----HHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHH-----HHHHHHHHHhccCCHHHHHHHHHH
Confidence            44443  124444444444557889999999999998531    2222222     3344444443 4688999999999


Q ss_pred             HHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcC-CCHHHHHHHHHHHH
Q 011328          394 LENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSH-DNTEIYEKAVKILE  449 (488)
Q Consensus       394 L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~-~~~~v~~~a~~~l~  449 (488)
                      |++++..+..            ..+..+..|....+..+... ..++|.+-+..++.
T Consensus       258 LGtL~~~~~~------------~~~lak~l~~~~~v~~~~~~~~~~kv~~~~~~~~~  302 (304)
T 3ebb_A          258 LGTLISDDSN------------AVQLAKSLGVDSQIKKYSSVSEPAKVSECCRFILN  302 (304)
T ss_dssp             HHHHHTTCHH------------HHHHHHHTTHHHHGGGGGGCCSSHHHHHHHHHHHT
T ss_pred             HHHHHhCChh------------HHHHHHHcCHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence            9999965332            35556666666667777554 56778877776654

>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*

Probab=95.19  E-value=1.1  Score=41.90  Aligned_cols=155  Identities=12%  Similarity=0.107  Sum_probs=102.1

Q ss_pred             HHHHHHhcCCC-HHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcC-----------CCChhHHHHHHHHHHH
Q 011328           33 PAMVAGVWSDD-RNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSR-----------DDFPQLQFEAAWALTN  100 (488)
Q Consensus        33 ~~l~~~L~s~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~-----------~~~~~v~~~a~~~L~~  100 (488)
                      ...++.|++.- ..-....+..|..-+...+...++.++ .+++..|++.|..           .+ ...+..+++||..
T Consensus        69 ~~yi~~L~~~~~~~kl~~~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d-~~~q~~~l~CLka  146 (383)
T 3eg5_B           69 MMYIQELRSGLRDMHLLSCLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYD-SRNQHEIIRCLKA  146 (383)
T ss_dssp             HHHHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------C-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcccchhHHHHHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhh-HHHHHHHHHHHHH
Confidence            34566666542 222234455666555554444567776 6678888888741           12 4788899999999


Q ss_pred             hcCCCchhhHHHH-hCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCc-hh-HHHH----------HhcCChHHHHHHh
Q 011328          101 IASGTSENTRVVI-DHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSP-KC-RDLV----------LSNGALMPLLAQF  167 (488)
Q Consensus       101 l~~~~~~~~~~~~-~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~-~~-~~~~----------~~~~~l~~L~~ll  167 (488)
                      +.. +......++ ....+..+...+.+.++.++..++..|+.+|..+. .. ...+          .+..-...++..+
T Consensus       147 lmN-~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L  225 (383)
T 3eg5_B          147 FMN-NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGL  225 (383)
T ss_dssp             HTS-SHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTT
T ss_pred             Hhc-chhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHH
Confidence            998 555555555 55789999999999999999999999999987653 21 2222          2233466777777


Q ss_pred             cccccHhHHHHHHHHHHHhhcCC
Q 011328          168 NEHAKLSMLRNATWTLSNFCRGK  190 (488)
Q Consensus       168 ~~~~~~~v~~~a~~~L~~l~~~~  190 (488)
                      ....+.+.+..++..+-.+....
T Consensus       226 ~~~~~~e~~~~~m~lIN~li~~~  248 (383)
T 3eg5_B          226 KSGTSIALKVGCLQLINALITPA  248 (383)
T ss_dssp             STTSCHHHHHHHHHHHHHHHTTC
T ss_pred             HccCcHHHHHHHHHHHHHHHcCC
Confidence            44456666666666666666654

>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1

Probab=94.39  E-value=2.1  Score=45.99  Aligned_cols=167  Identities=15%  Similarity=0.177  Sum_probs=110.7

Q ss_pred             CHHHHHHhhCC----CCHHHHHHHHHHHhhhh----CCCchhHHHHHhcCChHHHHHHhc---ccccHhHHHHHHHHHHH
Q 011328          117 AVPIFVRLLSS----PTDDVREQAVWALGNVA----GDSPKCRDLVLSNGALMPLLAQFN---EHAKLSMLRNATWTLSN  185 (488)
Q Consensus       117 ~i~~L~~~L~~----~~~~v~~~a~~~L~~l~----~~~~~~~~~~~~~~~l~~L~~ll~---~~~~~~v~~~a~~~L~~  185 (488)
                      .+..+..++.+    .++.+++.++.+++.++    ...+.|..     ..++.+.+.+.   ...+..-+..++.+|.|
T Consensus       392 ~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~-----~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN  466 (1056)
T 1lsh_A          392 SLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPD-----ELLQPLHDLLSQSSDRAKEEEIVLALKALGN  466 (1056)
T ss_dssp             HHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCG-----GGTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCH-----HHHHHHHHHHHHHHhcCChHHHHHHHHHhhc
Confidence            35666667765    56788888888888775    23222211     12344444432   33456677889999999


Q ss_pred             hhcCCCCCChhhhhchHHHHHHhhcc-------CChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhc--CCCCc
Q 011328          186 FCRGKPQPLFEQTRPALPALERLIHS-------NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL--RHPSP  256 (488)
Q Consensus       186 l~~~~~~~~~~~~~~~~~~l~~ll~~-------~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL--~~~~~  256 (488)
                      +...          ..++.+.+++..       ....++..|+++|..+....+...+        +.++++.  ...++
T Consensus       467 ~g~p----------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v~--------~il~~i~~n~~e~~  528 (1056)
T 1lsh_A          467 AGQP----------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKVQ--------EIVLPIFLNVAIKS  528 (1056)
T ss_dssp             HTCG----------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHHH--------HHHHHHHHCTTSCH
T ss_pred             cCCh----------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHHHH--------HHHHHHhcCCCCCh
Confidence            8763          467777777642       1356888999999999876543333        5566776  44678


Q ss_pred             chHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCC
Q 011328          257 SVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGN  316 (488)
Q Consensus       257 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~  316 (488)
                      ++|..|+..|...   ++..       ..+..+...+..+.+..|+......|.+++...
T Consensus       529 EvRiaA~~~Lm~t---~P~~-------~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~  578 (1056)
T 1lsh_A          529 ELRIRSCIVFFES---KPSV-------ALVSMVAVRLRREPNLQVASFVYSQMRSLSRSS  578 (1056)
T ss_dssp             HHHHHHHHHHHHT---CCCH-------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHH---CcCH-------HHHHHHHHHHhhCchHHHHHHHHHHHHHHHhcC
Confidence            8999988877432   2322       235667777777658899999999999998843

>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B

Probab=94.23  E-value=0.53  Score=44.07  Aligned_cols=139  Identities=14%  Similarity=0.081  Sum_probs=97.3

Q ss_pred             hhhHHHHHHHHHHHHhcCCHHHHHHHHH-cCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHH-HHH----------
Q 011328          298 KKSIKKEACWTISNITAGNVNQIQAIIE-AGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQ-IKF----------  365 (488)
Q Consensus       298 ~~~v~~~a~~~L~nl~~~~~~~~~~l~~-~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~-~~~----------  365 (488)
                      +......++.+|..+... ......++. .+.+..+...+.++++.++..++..|..++....++. ...          
T Consensus        71 d~~~~~~~l~CLkalmN~-~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~  149 (386)
T 2bnx_A           71 DSRNQHEIIRCLKAFMNN-KFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAE  149 (386)
T ss_dssp             HHHHHHHHHHHHHHHTSS-HHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhCC-HHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHH
Confidence            456677888888888765 445555554 4578888888888889999999888887776543111 111          


Q ss_pred             HHHCCChHHHHhhcC-CCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHH
Q 011328          366 LVSQGCIKPLCDLLN-CPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEK  443 (488)
Q Consensus       366 l~~~~~i~~L~~ll~-~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~~~~~v~~~  443 (488)
                      ..+..-...+++.++ +.+.+.+..++..+..++...+....      ....+..|...|..+.+..+....++++...
T Consensus       150 ~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~------R~~LR~Ef~~~GL~~il~~Lr~~~~~~L~~Q  222 (386)
T 2bnx_A          150 MDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDF------RVHIRSELMRLGLHQVLQELREIENEDMKVQ  222 (386)
T ss_dssp             HHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHH------HHHHHHHHHHTTHHHHHHHHTTCCCHHHHHH
T ss_pred             hCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHH------HHHHHHHHHHCChHHHHHHHhccCChhHHHH
Confidence            123345667777776 45667888888888888776554332      2236788899999999999988888887554

>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B

Probab=93.70  E-value=3.9  Score=38.18  Aligned_cols=139  Identities=11%  Similarity=0.103  Sum_probs=89.3

Q ss_pred             HHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcC----C------CChhHHHHHHHHHHHhcCCCchhhHHHH-hCCCHH
Q 011328           51 TTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSR----D------DFPQLQFEAAWALTNIASGTSENTRVVI-DHGAVP  119 (488)
Q Consensus        51 ~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~----~------~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~g~i~  119 (488)
                      +..|...+.+.+...++.+. .+++..|+..|..    .      .....+..+++||..+.. +......++ ..+.+.
T Consensus        26 L~~L~v~Lrt~~~~Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN-~~~Gl~~vl~~~~~i~  103 (386)
T 2bnx_A           26 LESLRVSLNNNPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN-NKFGIKTMLETEEGIL  103 (386)
T ss_dssp             HHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTS-SHHHHHHHHHSSSHHH
T ss_pred             HHHHhHHHhcCCcHHHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhC-CHHHHHHHHcCcHHHH
Confidence            34444434444334455564 5677777777641    1      125678899999999998 555555555 557899


Q ss_pred             HHHHhhCCCCHHHHHHHHHHHhhhhCCCc-hh-HHHH----------HhcCChHHHHHHhcccccHhHHHHHHHHHHHhh
Q 011328          120 IFVRLLSSPTDDVREQAVWALGNVAGDSP-KC-RDLV----------LSNGALMPLLAQFNEHAKLSMLRNATWTLSNFC  187 (488)
Q Consensus       120 ~L~~~L~~~~~~v~~~a~~~L~~l~~~~~-~~-~~~~----------~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~  187 (488)
                      .+...+.+.++.++..++..|..+|..+. +. ...+          .+..-+..++..+..+.+.+.+..++..+-.+.
T Consensus       104 ~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv  183 (386)
T 2bnx_A          104 LLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALI  183 (386)
T ss_dssp             HHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence            99999999999999999999998886553 21 2221          122345667777755556666666666666666


Q ss_pred             cCCC
Q 011328          188 RGKP  191 (488)
Q Consensus       188 ~~~~  191 (488)
                      ...+
T Consensus       184 ~~~~  187 (386)
T 2bnx_A          184 TPAE  187 (386)
T ss_dssp             TTCS
T ss_pred             CCCC
Confidence            6543

>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*

Probab=93.35  E-value=5  Score=37.18  Aligned_cols=88  Identities=10%  Similarity=0.124  Sum_probs=67.2

Q ss_pred             HHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHh
Q 011328           45 NIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRL  124 (488)
Q Consensus        45 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~  124 (488)
                      ..+...+.-+.+++-..++.     .-.++++.++++-.+.+ .++|...+..|...+....+...     ..++.|..+
T Consensus        40 ~~Kl~~L~q~~EL~l~~dps-----Ll~~fl~~il~f~~d~~-~~vRk~~a~FieEa~~~~~el~~-----~~l~~L~~L  108 (386)
T 3o2t_A           40 DSKITVLKQVQELIINKDPT-----LLDNFLDEIIAFQADKS-IEVRKFVIGFIEEACKRDIELLL-----KLIANLNML  108 (386)
T ss_dssp             THHHHHHHHHHHHHHTTCGG-----GGGGGHHHHHGGGGCSC-HHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccCHH-----HHHHHHHHHHHhccCCc-HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHH
Confidence            46888888888875543222     22578999999988888 89999999999988874444433     246788888


Q ss_pred             hCCCCHHHHHHHHHHHhhh
Q 011328          125 LSSPTDDVREQAVWALGNV  143 (488)
Q Consensus       125 L~~~~~~v~~~a~~~L~~l  143 (488)
                      ++++++.+...++.+.+++
T Consensus       109 L~d~d~~V~K~~I~~~tsl  127 (386)
T 3o2t_A          109 LRDENVNVVKKAILTMTQL  127 (386)
T ss_dssp             HTCSSHHHHHHHHHHHHHH
T ss_pred             HcCCCHHHHHHHHHHHHHH
Confidence            8888999998888888776

>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A

Probab=92.88  E-value=0.32  Score=37.77  Aligned_cols=79  Identities=14%  Similarity=0.254  Sum_probs=58.6

Q ss_pred             ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhh-ccHHHHHHhhcCCC--------HHHH
Q 011328          371 CIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDA-EGLEKIENLQSHDN--------TEIY  441 (488)
Q Consensus       371 ~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~-g~~~~L~~l~~~~~--------~~v~  441 (488)
                      +++.|.+-|++.++.++..+|.+|..++..+...           |...+++. ..++.+.++...++        ..|+
T Consensus        50 im~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~-----------f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR  118 (140)
T 1vdy_A           50 FSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSE-----------FRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVR  118 (140)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHH-----------HHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHHH
T ss_pred             HHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHH-----------HHHHHHHhHHHHHHHHhcCCCCCcccccchhHHHH
Confidence            5788888888889999999999999998766532           55555433 34555555544433        7799


Q ss_pred             HHHHHHHHHhcCCCCCCCC
Q 011328          442 EKAVKILETYWVEEDEDEP  460 (488)
Q Consensus       442 ~~a~~~l~~~~~~~~~~~~  460 (488)
                      .+|..+++-+|+.++...+
T Consensus       119 ~~AkEl~~ll~d~~~~~~~  137 (140)
T 1vdy_A          119 ETAHETISAIFSEENGSGP  137 (140)
T ss_dssp             HHHHHHHHHHTCCSSCCCC
T ss_pred             HHHHHHHHHHhCcCCCCCC
Confidence            9999999999999887543

>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*

Probab=92.24  E-value=4.1  Score=37.78  Aligned_cols=174  Identities=11%  Similarity=0.035  Sum_probs=109.9

Q ss_pred             HHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCC
Q 011328          175 MLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP  254 (488)
Q Consensus       175 v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~  254 (488)
                      .+...+.-+..+.-+.   .......+++.++.+-.+.+.+++..++..|...+....+..     ..+++.|..++.++
T Consensus        41 ~Kl~~L~q~~EL~l~~---dpsLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el~-----~~~l~~L~~LL~d~  112 (386)
T 3o2t_A           41 SKITVLKQVQELIINK---DPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELL-----LKLIANLNMLLRDE  112 (386)
T ss_dssp             HHHHHHHHHHHHHHTT---CGGGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGH-----HHHHHHHHHHHTCS
T ss_pred             HHHHHHHHHHHHHhcc---CHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHcCC
Confidence            3445555555544332   123567899999999999999999999999998886443332     25567888888888


Q ss_pred             CcchHhHHHHHHhHhhcC-------Cch---hhHHHh--hCCChHHHHHHhcccchhhHHHHHHHHHHHHhc----CCHH
Q 011328          255 SPSVLIPALRTVGNIVTG-------DDM---QTQCII--NHQALPCLLDLLTQNYKKSIKKEACWTISNITA----GNVN  318 (488)
Q Consensus       255 ~~~v~~~a~~~L~~l~~~-------~~~---~~~~~~--~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~----~~~~  318 (488)
                      ++.+...++.+.+++-..       ++.   ......  -..+-..++.++.+. +..+|..++..+-.+..    +..+
T Consensus       113 d~~V~K~~I~~~tslYpl~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~-n~GVrl~aiKFle~VIl~qS~~~~d  191 (386)
T 3o2t_A          113 NVNVVKKAILTMTQLYKVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSD-NDGIRTHAIKFVEGLIVTLSPRMAD  191 (386)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCS-SHHHHHHHHHHHHHHHHHTSCCCTT
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccC-CcchHHHHHHHHHHHHHHhCCCCCC
Confidence            888888888777766420       111   011111  112345566677777 88999999988877652    1000


Q ss_pred             -----------------------HHHHHH--HcCChHHHHHHHhcC--ChhHHHHHHHHHHHhccC
Q 011328          319 -----------------------QIQAII--EAGIIGPLVNLLLNA--EFEIKKEAAWAISNATSG  357 (488)
Q Consensus       319 -----------------------~~~~l~--~~~~l~~L~~ll~~~--~~~v~~~a~~aL~~l~~~  357 (488)
                                             ....+-  ..+++..|+..+..+  +......++.+|+.++..
T Consensus       192 ~~~p~~~~~d~SL~~VP~nHp~L~~~~Le~EA~~lLd~LL~~l~~~~iss~~l~a~lnsLa~Iak~  257 (386)
T 3o2t_A          192 SEIPRRQEHDISLDRIPRDHPYIQYNVLWEEGKAALEQLLKFMVHPAISSINLTTALGSLANIARQ  257 (386)
T ss_dssp             CCCCGGGTTSCCGGGSCTTCSSSCHHHHHHHHHHHHHHHHHHTTC--CCHHHHHHHHHHHHHHHHH
T ss_pred             cccccccCCCCCHhhCCCCCCcCCHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHh
Confidence                                   001111  245788888888864  344556678888888764

>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B

Probab=91.93  E-value=0.25  Score=39.82  Aligned_cols=76  Identities=13%  Similarity=0.194  Sum_probs=57.7

Q ss_pred             ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcC-CCHHHHHHHHHHHH
Q 011328          371 CIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSH-DNTEIYEKAVKILE  449 (488)
Q Consensus       371 ~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~-~~~~v~~~a~~~l~  449 (488)
                      ++..|.+-+.+.++.++..|+..|..+++.+...           |...+.....++.+..+... .+++|+.++..++.
T Consensus        53 A~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~-----------Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~  121 (163)
T 1x5b_A           53 CLKAIMKRVNHKVPHVALQALTLLGACVANCGKI-----------FHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMV  121 (163)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHH-----------HHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHH-----------HHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHH
Confidence            4666777778899999999999999999875432           56566666667777777654 67899999999998


Q ss_pred             HhcCCCCC
Q 011328          450 TYWVEEDE  457 (488)
Q Consensus       450 ~~~~~~~~  457 (488)
                      ........
T Consensus       122 ~W~~~f~~  129 (163)
T 1x5b_A          122 EWSEEFQK  129 (163)
T ss_dssp             HHHHHTTT
T ss_pred             HHHHHhcC
Confidence            77665554

>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}

Probab=91.47  E-value=1.4  Score=39.05  Aligned_cols=135  Identities=14%  Similarity=0.093  Sum_probs=89.9

Q ss_pred             chHhHHHHHHhHhhcCCchhhHHHh-hCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHH--cCChHHHH
Q 011328          257 SVLIPALRTVGNIVTGDDMQTQCII-NHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIE--AGIIGPLV  333 (488)
Q Consensus       257 ~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~--~~~l~~L~  333 (488)
                      .....|+..|.-++..-....+.+- +...+..|+ +.... .+.++..|.++++...+++|.....+.+  ..++..++
T Consensus        43 ~~le~aLD~L~ElSHDi~~G~KI~~~ef~lL~nL~-~~~~~-~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~lf  120 (315)
T 3qml_C           43 ARLEDSFDRIMEFAHDYKHGYKIITHEFALLANLS-LNENL-PLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSKIM  120 (315)
T ss_dssp             HHHHHHHHHHGGGTTSHHHHHHHHHHHHHHHHHHH-HCTTS-CHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhHHhhhHHHhCcHHHHHHHH-hhccC-ChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHHHH
Confidence            3556788888888765443333332 323333333 22333 6679999999999999999999988876  34566666


Q ss_pred             HHHhc-------CChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCC--CHHHHHHHHHHHHHHHH
Q 011328          334 NLLLN-------AEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCP--DPRIVTVCLEGLENILK  399 (488)
Q Consensus       334 ~ll~~-------~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~al~~L~~l~~  399 (488)
                      .-|..       ....+++.-+.+|.-|+... ...     ....+..|.+++...  ++.++..++..+..++.
T Consensus       121 ~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~-~~F-----~~~~m~~L~~ly~~~~~d~~~k~Kvl~li~d~f~  189 (315)
T 3qml_C          121 AALSNLNDSNHRSSNILIKRYLSILNELPVTS-EDL-----PIYSTVVLQNVYERNNKDKQLQIKVLELISKILK  189 (315)
T ss_dssp             HHHHHHHCC--CCCHHHHHHHHHHHHHSCCCS-TTC-------CCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhcccchhHHHHHHHHHHHHHHhcCh-Hhh-----hhccHHHHHHHHccCCCCHHHHHHHHHHHHHHcc
Confidence            55443       23356677788888887653 111     235677788877766  88999999999998885

>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}

Probab=91.42  E-value=2.3  Score=37.67  Aligned_cols=149  Identities=11%  Similarity=0.090  Sum_probs=97.9

Q ss_pred             hchHHHHHHhhccC------ChhHHHHHHHHHHHhccCCchhHHHHHH--hCCHHHHHHhcCCCCcchHhHHHHHHhHhh
Q 011328          199 RPALPALERLIHSN------DDEVLTDACWALSYLSDGTNDKIQAVIE--AGVCPRLVELLRHPSPSVLIPALRTVGNIV  270 (488)
Q Consensus       199 ~~~~~~l~~ll~~~------~~~v~~~al~~L~~l~~~~~~~~~~~~~--~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~  270 (488)
                      +.-+..+..+++++      +......++..|..++.....-.+ +++  ...+..|+ +.....+.+++.|.++|+...
T Consensus        21 s~~F~~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSHDi~~G~K-I~~~ef~lL~nL~-~~~~~~~~~rE~aarII~ssL   98 (315)
T 3qml_C           21 SSDFKEMRNIIDSNPTLSSQDIARLEDSFDRIMEFAHDYKHGYK-IITHEFALLANLS-LNENLPLTLRELSTRVITSCL   98 (315)
T ss_dssp             HHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTTSHHHHHH-HHHHHHHHHHHHH-HCTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHhhhhHHhhhH-HHhCcHHHHHHHH-hhccCChhHHHHHHHHHHHHH
Confidence            34445556666665      455677888888888866543333 443  34444444 334456679999999999999


Q ss_pred             cCCchhhHHHhh--CCChHHHHHHhcc-------cchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC--
Q 011328          271 TGDDMQTQCIIN--HQALPCLLDLLTQ-------NYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA--  339 (488)
Q Consensus       271 ~~~~~~~~~~~~--~~~~~~L~~lL~~-------~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~--  339 (488)
                      +.+|.....+.+  ..++..+..-|..       . ...+.+.-+.+|.-|...+..    + ....+..|.+++...  
T Consensus        99 RNNP~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~-~~~l~KR~LsII~~L~~~~~~----F-~~~~m~~L~~ly~~~~~  172 (315)
T 3qml_C           99 RNNPPVVEFINESFPNFKSKIMAALSNLNDSNHRS-SNILIKRYLSILNELPVTSED----L-PIYSTVVLQNVYERNNK  172 (315)
T ss_dssp             TTCHHHHHHHHHHCTTHHHHHHHHHHHHHCC--CC-CHHHHHHHHHHHHHSCCCSTT----C---CCHHHHHHHHHHTTT
T ss_pred             ccCHHHHHHHHHhChhHHHHHHHHHHHHhhcccch-hHHHHHHHHHHHHHHhcChHh----h-hhccHHHHHHHHccCCC
Confidence            999988777664  2444444444322       2 335667777888888775321    1 244678888888877  


Q ss_pred             ChhHHHHHHHHHHHhc
Q 011328          340 EFEIKKEAAWAISNAT  355 (488)
Q Consensus       340 ~~~v~~~a~~aL~~l~  355 (488)
                      ++.+|..++..+..+-
T Consensus       173 d~~~k~Kvl~li~d~f  188 (315)
T 3qml_C          173 DKQLQIKVLELISKIL  188 (315)
T ss_dssp             CHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHc
Confidence            8899999999888876

>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}

Probab=91.28  E-value=6.9  Score=34.02  Aligned_cols=99  Identities=6%  Similarity=0.061  Sum_probs=70.9

Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHH
Q 011328           34 AMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVI  113 (488)
Q Consensus        34 ~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~  113 (488)
                      .+++..+....+.+...+.....++-..++...     ..+++.++.+..+.+ .++|...+..+...+...++....  
T Consensus        19 ~lln~A~~~~~~~kl~~L~qa~el~~~~dp~ll-----~~~l~~il~~~~~~~-~~vrk~~~~Fi~e~~~~k~~l~~~--   90 (257)
T 3gs3_A           19 DWCNELVIASPSTKCELLAKVQETVLGSCAELA-----EEFLESVLSLAHDSN-MEVRKQVVAFVEQVCKVKVELLPH--   90 (257)
T ss_dssp             HHHHHHTTCCHHHHHHHHHHHHHHHTTTTGGGH-----HHHHHHHHGGGGCSC-HHHHHHHHHHHHHHHHHCGGGHHH--
T ss_pred             HHHHHhhhcCcHHHHHHHHHHHHHHHccCHhHH-----HHHHHHHHHhccCCh-HHHHHHHHHHHHHHHHHHHHHHHH--
Confidence            344444443346888899999997665433322     346778888776766 899999999999988654544333  


Q ss_pred             hCCCHHHHHHhhCCCCHHHHHHHHHHHhhh
Q 011328          114 DHGAVPIFVRLLSSPTDDVREQAVWALGNV  143 (488)
Q Consensus       114 ~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l  143 (488)
                         .++.|..+++++++.+...++.+..++
T Consensus        91 ---~l~~L~~Ll~d~d~~V~K~~I~~~~~i  117 (257)
T 3gs3_A           91 ---VINVVSMLLRDNSAQVIKRVIQACGSI  117 (257)
T ss_dssp             ---HHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred             ---HHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence               467888889888999998888877776

>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*

Probab=89.38  E-value=9.1  Score=35.59  Aligned_cols=235  Identities=12%  Similarity=0.044  Sum_probs=110.1

Q ss_pred             hhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHh
Q 011328          107 ENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNF  186 (488)
Q Consensus       107 ~~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l  186 (488)
                      ......++...+..|+.+++++++.=|+..-.+|..+-..-...|..+.. ..-..+.+.+.......=....+.+++.+
T Consensus       120 ~~~k~~id~~Fi~~Ll~lfdSeDprER~~LktiLhrIY~kf~~~R~~Irk-~innif~~fiye~e~~~GIaeLLeilgsI  198 (403)
T 3fga_B          120 NIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRK-QINNIFYRFIYETEHHNGIAELLEILGSI  198 (403)
T ss_dssp             HHHTTTSCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHHH-HHHHHHHHHHHTTCCCTTHHHHHHHHHHH
T ss_pred             hhHHhhcCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhhhhhHHHHHH-HHHHHHHHHhcCcccCCCHHHHHHHHHHH
Confidence            33344455567888999999999999999888888875433333332221 11122333332211111123445555555


Q ss_pred             hcCCC-CCChhhhhchHHHHHHhhccCChhH-HHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHH
Q 011328          187 CRGKP-QPLFEQTRPALPALERLIHSNDDEV-LTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALR  264 (488)
Q Consensus       187 ~~~~~-~~~~~~~~~~~~~l~~ll~~~~~~v-~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~  264 (488)
                      ..+-. ........-....++.+-+...-.. -.....|+......++.....++     ..+++.=-..++.=...-+.
T Consensus       199 inGfa~PLkeehk~fl~~vLlPLHk~~~~~~y~~qL~ycv~qf~eKDp~L~~~vi-----~~LLk~WP~tns~KevlFL~  273 (403)
T 3fga_B          199 INGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPVV-----MALLKYWPKTHSPKEVMFLN  273 (403)
T ss_dssp             HHHCCSSCCHHHHHHHHHTTTGGGGSTTGGGTHHHHHHHHHHHHHHCGGGHHHHH-----HHHHHTCCSSCHHHHHHHHH
T ss_pred             HcccCCCchHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHhCchhHHHHH-----HHHHHhCCCCCcHHHHHHHH
Confidence            54431 1112222233344444444433221 23334444444444443333222     22222111122211222233


Q ss_pred             HHhHhhcCC-chhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHH-----HHhcCCHHHHHHHHHcCChHHHHHHH--
Q 011328          265 TVGNIVTGD-DMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTIS-----NITAGNVNQIQAIIEAGIIGPLVNLL--  336 (488)
Q Consensus       265 ~L~~l~~~~-~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~-----nl~~~~~~~~~~l~~~~~l~~L~~ll--  336 (488)
                      -+..+...- +.....+. ..++..+...+.++ +..|-+.|+....     ++...+...        ++|.+...+  
T Consensus       274 Ele~iLe~~~~~~f~~i~-~~lf~~la~ci~S~-hfqVAErAL~~wnNe~i~~li~~n~~~--------IlPii~p~L~~  343 (403)
T 3fga_B          274 ELEEILDVIEPSEFVKIM-EPLFRQLAKCVSSP-HFQVAERALYYWNNEYIMSLISDNAAK--------ILPIMFPSLYR  343 (403)
T ss_dssp             HHHHHHTTCCHHHHHHHH-HHHHHHHHHHHTCS-CHHHHHHHHGGGGCHHHHHHHHTTHHH--------HHHHHHHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHH-HHHHHHHHHHHCCC-CHHHHHHHHHHhccHHHHHHHHHhHHH--------HHHHHHHHHHH
Confidence            333343322 22222221 23556666777777 7777777765432     222222221        344444443  


Q ss_pred             --hcC-ChhHHHHHHHHHHHhccC
Q 011328          337 --LNA-EFEIKKEAAWAISNATSG  357 (488)
Q Consensus       337 --~~~-~~~v~~~a~~aL~~l~~~  357 (488)
                        ... +..++..+..++.-+...
T Consensus       344 ~~~~HWn~~v~~l~~~vlk~l~e~  367 (403)
T 3fga_B          344 NSKTHWNKTIHGLIYNALKLFMEM  367 (403)
T ss_dssp             TTSCCSCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHccCHHHHHHHHHHHHHHHHh
Confidence              333 778998888888887653

>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0

Probab=88.40  E-value=0.97  Score=35.31  Aligned_cols=72  Identities=8%  Similarity=0.048  Sum_probs=58.3

Q ss_pred             ChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHH
Q 011328          328 IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILK  399 (488)
Q Consensus       328 ~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~  399 (488)
                      ++..+.+-+.++++.++..|+..|-.++.+++......+....++..|..+++..++.|+..++..+..-..
T Consensus        43 a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~  114 (140)
T 3ldz_A           43 CLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTD  114 (140)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence            455667778888999999999999999999888777777666778888888877888999999888876544

>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*

Probab=87.77  E-value=1.5  Score=34.57  Aligned_cols=73  Identities=8%  Similarity=-0.047  Sum_probs=60.4

Q ss_pred             ChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCC------CCHHHHHHHHHHHHHHHHh
Q 011328          328 IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNC------PDPRIVTVCLEGLENILKA  400 (488)
Q Consensus       328 ~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~------~~~~v~~~al~~L~~l~~~  400 (488)
                      ++..|..-+.++++.++..|+..|-.++.++...+...+....++..|+.++..      .+++|+..++..+..-...
T Consensus        49 a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~  127 (149)
T 3g2s_A           49 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVG  127 (149)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHHH
Confidence            455677778888999999999999999999998888888888888999988863      5678999988888766543

>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B

Probab=86.45  E-value=0.98  Score=36.33  Aligned_cols=74  Identities=12%  Similarity=0.061  Sum_probs=57.3

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcC
Q 011328           30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIAS  103 (488)
Q Consensus        30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~  103 (488)
                      +.+..|.+.|++.++.+++.|+..|-.+..+-.......+....++..|++++.....+.|+..++..+...+.
T Consensus        52 eA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~  125 (163)
T 1x5b_A           52 DCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSE  125 (163)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence            56677888889999999999999999988775344455666677888888888764448899998888776654

>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2

Probab=86.26  E-value=1.4  Score=34.74  Aligned_cols=71  Identities=8%  Similarity=-0.072  Sum_probs=58.4

Q ss_pred             ChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCC------CCHHHHHHHHHHHHHHH
Q 011328          328 IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNC------PDPRIVTVCLEGLENIL  398 (488)
Q Consensus       328 ~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~------~~~~v~~~al~~L~~l~  398 (488)
                      ++..+..-++++++.++..|+..|-.++.+++..+...+....++..|..++..      .++.|+..++..+..-.
T Consensus        39 a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~  115 (148)
T 1mhq_A           39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWT  115 (148)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHH
Confidence            455667778889999999999999999999988888888888889999998874      46788888887776543

>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0

Probab=85.33  E-value=1.8  Score=33.71  Aligned_cols=76  Identities=14%  Similarity=0.239  Sum_probs=56.6

Q ss_pred             ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHH
Q 011328          371 CIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILET  450 (488)
Q Consensus       371 ~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~~~~~v~~~a~~~l~~  450 (488)
                      ++..|.+-+.+.++.++..|+..|..+++.+...           |...+.+...++.+..+....+++|+.+...++..
T Consensus        43 a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~-----------f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~  111 (140)
T 3ldz_A           43 CLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKI-----------FHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVE  111 (140)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHH-----------HHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHH-----------HHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHH
Confidence            4667777778889999999999999888775432           45555555566667777666789999999999987


Q ss_pred             hcCCCCC
Q 011328          451 YWVEEDE  457 (488)
Q Consensus       451 ~~~~~~~  457 (488)
                      ....-.+
T Consensus       112 W~~~f~~  118 (140)
T 3ldz_A          112 WTDEFKN  118 (140)
T ss_dssp             HHHHHTT
T ss_pred             HHHHhCC
Confidence            6655443

>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2

Probab=84.95  E-value=2.8  Score=32.95  Aligned_cols=76  Identities=16%  Similarity=0.150  Sum_probs=58.9

Q ss_pred             ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcC------CCHHHHHHH
Q 011328          371 CIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSH------DNTEIYEKA  444 (488)
Q Consensus       371 ~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~------~~~~v~~~a  444 (488)
                      ++..|..-+.+.++.++..|+..|..+++.+...           |...+.+...++.|..+...      .+++|+.++
T Consensus        39 a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~-----------fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~ki  107 (148)
T 1mhq_A           39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGEK-----------FHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRV  107 (148)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHH-----------HHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHH-----------HHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHH
Confidence            4666777778899999999999999999875432           66777777778888888653      478999999


Q ss_pred             HHHHHHhcCCCCC
Q 011328          445 VKILETYWVEEDE  457 (488)
Q Consensus       445 ~~~l~~~~~~~~~  457 (488)
                      ..++......-..
T Consensus       108 l~li~~W~~~f~~  120 (148)
T 1mhq_A          108 IEILFSWTVWFPE  120 (148)
T ss_dssp             HHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHcCC
Confidence            9999876655443

>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*

Probab=84.83  E-value=3.1  Score=33.69  Aligned_cols=74  Identities=15%  Similarity=0.216  Sum_probs=56.1

Q ss_pred             ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhc------CCCHHHHHHH
Q 011328          371 CIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQS------HDNTEIYEKA  444 (488)
Q Consensus       371 ~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~------~~~~~v~~~a  444 (488)
                      ++..|.+-+.+.++.++..++..|..+++.+...           |...+.+...++.|..+..      ..+.+|++++
T Consensus        51 A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~-----------Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~ki  119 (171)
T 1juq_A           51 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGRR-----------FHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKV  119 (171)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHH-----------HHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHH-----------HHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHH
Confidence            4667777788899999999999999999885532           5666766777777888764      2468899999


Q ss_pred             HHHHHHhcCCC
Q 011328          445 VKILETYWVEE  455 (488)
Q Consensus       445 ~~~l~~~~~~~  455 (488)
                      ..++......-
T Consensus       120 l~li~~W~~~f  130 (171)
T 1juq_A          120 IELLYSWTMAL  130 (171)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHHHc
Confidence            98887655443

>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20

Probab=84.28  E-value=20  Score=33.97  Aligned_cols=236  Identities=12%  Similarity=0.041  Sum_probs=117.5

Q ss_pred             chhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHH
Q 011328          106 SENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSN  185 (488)
Q Consensus       106 ~~~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~  185 (488)
                      +......++...+..|+.+++++++.-|+..-.+|..+-..-...|..+.. ..-..+.+.+.......-....+..++.
T Consensus       152 ~~~~k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk-~i~nif~~fi~e~e~~nGIaeLLeilgS  230 (449)
T 2npp_B          152 PNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRK-QINNIFYRFIYETEHHNGIAELLEILGS  230 (449)
T ss_dssp             STTGGGTSCHHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHSCTTTHHHHHH-HHHHHHHHHHHTCSCCSCHHHHHHHHHH
T ss_pred             hhhhhhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcccCCCCCHHHHHHHHHH
Confidence            334455566678899999999999999999888887775433333333322 1222344444222222223456667777


Q ss_pred             hhcCCCC-CChhhhhchHHHHHHhhccCChhH-HHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHH
Q 011328          186 FCRGKPQ-PLFEQTRPALPALERLIHSNDDEV-LTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPAL  263 (488)
Q Consensus       186 l~~~~~~-~~~~~~~~~~~~l~~ll~~~~~~v-~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~  263 (488)
                      +..+-.. .......-....++.+.+...-.. -.....|+......++.....++     ..|++.=-..++.=...-+
T Consensus       231 IinGfa~PLKeehk~fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~vi-----~~LLk~WP~tns~KevlFL  305 (449)
T 2npp_B          231 IINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPVV-----MALLKYWPKTHSPKEVMFL  305 (449)
T ss_dssp             HHSSCCSSCCHHHHHHHHHTTGGGGGSSCGGGTHHHHHHHHHHHHHHCGGGHHHHH-----HHHHHTCCSSCHHHHHHHH
T ss_pred             HHhccCCCCcHHHHHHHHHHHHHHHccchhHHhHHHHHHHHHHHHhcCcHhHHHHH-----HHHHHhCCCCCchHHHHHH
Confidence            7666521 222222333444555555443222 22333444444444443333222     2222221112221112223


Q ss_pred             HHHhHhhcCC-chhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHH-----HHhcCCHHHHHHHHHcCChHHHHHHHh
Q 011328          264 RTVGNIVTGD-DMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTIS-----NITAGNVNQIQAIIEAGIIGPLVNLLL  337 (488)
Q Consensus       264 ~~L~~l~~~~-~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~-----nl~~~~~~~~~~l~~~~~l~~L~~ll~  337 (488)
                      .-+..+.... +.....+. ..++..+-..+.++ +..|-+.|+....     ++...+..        .++|.++..+.
T Consensus       306 ~eleeile~~~~~ef~~i~-~~lF~~la~ci~S~-hfqVAErAL~~w~N~~i~~li~~n~~--------~IlPii~p~L~  375 (449)
T 2npp_B          306 NELEEILDVIEPSEFVKIM-EPLFRQLAKCVSSP-HFQVAERALYYWNNEYIMSLISDNAA--------KILPIMFPSLY  375 (449)
T ss_dssp             HHHHHHHTTCCHHHHHHHH-HHHHHHHHHHHTCS-CHHHHHHHHGGGGCHHHHHHHHTTHH--------HHHHHHHHHHT
T ss_pred             HHHHHHHHhCCHHHHHHHH-HHHHHHHHHHHcCC-CHHHHHHHHHHHCCHHHHHHHHhchh--------hhHHhhHHHHH
Confidence            3343443322 22222222 23566677777777 7778777764432     22222222        24566666553


Q ss_pred             c----C-ChhHHHHHHHHHHHhccC
Q 011328          338 N----A-EFEIKKEAAWAISNATSG  357 (488)
Q Consensus       338 ~----~-~~~v~~~a~~aL~~l~~~  357 (488)
                      .    . +..++..+..++.-+...
T Consensus       376 ~~s~~HWn~~V~~la~~vlk~l~e~  400 (449)
T 2npp_B          376 RNSKTHWNKTIHGLIYNALKLFMEM  400 (449)
T ss_dssp             SCTTCCSSTTHHHHHHHHHHHHHTT
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHHH
Confidence            2    2 677898888888877654

>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*

Probab=83.71  E-value=2.6  Score=33.16  Aligned_cols=74  Identities=16%  Similarity=0.227  Sum_probs=57.9

Q ss_pred             ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhc------CCCHHHHHHH
Q 011328          371 CIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQS------HDNTEIYEKA  444 (488)
Q Consensus       371 ~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~------~~~~~v~~~a  444 (488)
                      ++..|..-+.+.++.++..++..|..+++.+...           |...+.....++.|.++..      ..+++|+.+.
T Consensus        49 a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~-----------fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~ki  117 (149)
T 3g2s_A           49 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKR-----------FHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKI  117 (149)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHH-----------HHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHH-----------HHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHH
Confidence            4667777778899999999999999998876543           5666777777788888864      3578999999


Q ss_pred             HHHHHHhcCCC
Q 011328          445 VKILETYWVEE  455 (488)
Q Consensus       445 ~~~l~~~~~~~  455 (488)
                      ..++......-
T Consensus       118 l~li~~W~~~f  128 (149)
T 3g2s_A          118 LELLYSWTVGL  128 (149)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHHHh
Confidence            99998766544

>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*

Probab=82.23  E-value=1.7  Score=35.24  Aligned_cols=71  Identities=8%  Similarity=-0.030  Sum_probs=57.2

Q ss_pred             ChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCC------CCHHHHHHHHHHHHHHH
Q 011328          328 IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNC------PDPRIVTVCLEGLENIL  398 (488)
Q Consensus       328 ~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~------~~~~v~~~al~~L~~l~  398 (488)
                      ++..|.+-+.++++.++..|+..|-.++.++.......+....++..|+.++..      .+..|+..++..+..-.
T Consensus        51 A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~  127 (171)
T 1juq_A           51 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWT  127 (171)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence            455677778889999999999999999999877777777777888889988862      35788888887776543

>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20

Probab=81.63  E-value=21  Score=33.83  Aligned_cols=228  Identities=12%  Similarity=0.084  Sum_probs=121.9

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCC----
Q 011328           30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGT----  105 (488)
Q Consensus        30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~----  105 (488)
                      .-+..|+.++.|+|+..|..-...|..+-.+-  ...+..+...+-..+.+.+.......-....+.+++.+..+-    
T Consensus       162 ~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf--~~~R~~Irk~i~nif~~fi~e~e~~nGIaeLLeilgSIinGfa~PL  239 (449)
T 2npp_B          162 KFVLQLLELFDSEDPRERDFLKTTLHRIYGKF--LGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPL  239 (449)
T ss_dssp             HHHHHHHHTTTSSTHHHHHHHHHHHHHHHHSC--TTTHHHHHHHHHHHHHHHHHTCSCCSCHHHHHHHHHHHHSSCCSSC
T ss_pred             HHHHHHHHHcCCCChHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHHhccCCCC
Confidence            66778999999999999999888888875543  223333333334455555533332344556788888887643    


Q ss_pred             -chhhHHHHhCCCHHHHHHhhCCCC-HHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHH
Q 011328          106 -SENTRVVIDHGAVPIFVRLLSSPT-DDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTL  183 (488)
Q Consensus       106 -~~~~~~~~~~g~i~~L~~~L~~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L  183 (488)
                       ++.+..+     ...|+.+.+... ......-..++..+...++.....+     +..+++.= ..+++.-...-+.-+
T Consensus       240 Keehk~fl-----~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~v-----i~~LLk~W-P~tns~KevlFL~el  308 (449)
T 2npp_B          240 KEEHKIFL-----LKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPV-----VMALLKYW-PKTHSPKEVMFLNEL  308 (449)
T ss_dssp             CHHHHHHH-----HHTTGGGGGSSCGGGTHHHHHHHHHHHHHHCGGGHHHH-----HHHHHHTC-CSSCHHHHHHHHHHH
T ss_pred             cHHHHHHH-----HHHHHHHHccchhHHhHHHHHHHHHHHHhcCcHhHHHH-----HHHHHHhC-CCCCchHHHHHHHHH
Confidence             2222222     233344444322 2222334445555554444332221     22233222 223333222333334


Q ss_pred             HHhhcCCCCCCh-hhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHh---CCHHHHHHhcCC-----C
Q 011328          184 SNFCRGKPQPLF-EQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA---GVCPRLVELLRH-----P  254 (488)
Q Consensus       184 ~~l~~~~~~~~~-~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~---~~l~~L~~lL~~-----~  254 (488)
                      ..+...-+.... .....++..+.+.+.+++-.|.+.|+....|     + ....++..   .+++.+...|..     =
T Consensus       309 eeile~~~~~ef~~i~~~lF~~la~ci~S~hfqVAErAL~~w~N-----~-~i~~li~~n~~~IlPii~p~L~~~s~~HW  382 (449)
T 2npp_B          309 EEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNN-----E-YIMSLISDNAAKILPIMFPSLYRNSKTHW  382 (449)
T ss_dssp             HHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGC-----H-HHHHHHHTTHHHHHHHHHHHHTSCTTCCS
T ss_pred             HHHHHhCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHCC-----H-HHHHHHHhchhhhHHhhHHHHHHHHHHhc
Confidence            444433222222 2335677778888889999999888755432     1 11112221   345666655522     2


Q ss_pred             CcchHhHHHHHHhHhhcCCchh
Q 011328          255 SPSVLIPALRTVGNIVTGDDMQ  276 (488)
Q Consensus       255 ~~~v~~~a~~~L~~l~~~~~~~  276 (488)
                      +..++..+..++..+...++..
T Consensus       383 n~~V~~la~~vlk~l~e~d~~l  404 (449)
T 2npp_B          383 NKTIHGLIYNALKLFMEMNQKL  404 (449)
T ss_dssp             STTHHHHHHHHHHHHHTTCHHH
T ss_pred             CHHHHHHHHHHHHHHHHHCHHH
Confidence            5678889998888887766543

>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*

Probab=81.18  E-value=1.1  Score=38.29  Aligned_cols=74  Identities=11%  Similarity=0.107  Sum_probs=57.0

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcC
Q 011328           30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIAS  103 (488)
Q Consensus        30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~  103 (488)
                      +.+..|.+.|++.++.+++.|+..|-.++.+-.......+....++..|.++++....+.|+..++..+...+.
T Consensus        45 ~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~  118 (226)
T 3zyq_A           45 YAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAH  118 (226)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence            56778888899999999999999999988765334455555667777888888654447899998888877654

>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6

Probab=80.52  E-value=4.1  Score=43.27  Aligned_cols=221  Identities=14%  Similarity=0.127  Sum_probs=120.5

Q ss_pred             hHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHH-----hccCCchh
Q 011328          160 LMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSY-----LSDGTNDK  234 (488)
Q Consensus       160 l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~-----l~~~~~~~  234 (488)
                      +..|+++. -+.-.+|+..|-.+|......-+.........++..|-.-+...+.+-.+.|+.+|..     .+..+-. 
T Consensus       135 l~dL~~Ls-~S~Y~~VR~~AQ~~L~~~~~~~~gs~~~iip~ll~~L~~~~~~~~~~~iKGaLy~L~~k~~~~~~~~d~~-  212 (997)
T 1vsy_5          135 LVDIIQLA-TSLYPDIYKPAQGTLVHCMKQLVGSYGVVINKIIPSLEKAIKDHDYMKIQVILNVLLIKKIHRKLMTDYK-  212 (997)
T ss_dssp             HHHHHHHH-TSSCHHHHHHHHHHHHHHHTTBTTHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHTTSHHHHHHGGGCHH-
T ss_pred             HHHHHHHh-cCchHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHhhhhhhhHHhcChH-
Confidence            45566655 6677899999999999888765444444444444444443345567777777776651     1111111 


Q ss_pred             HHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCch-hhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHh
Q 011328          235 IQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDM-QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNIT  313 (488)
Q Consensus       235 ~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~  313 (488)
                          .-..+++.|++....++++++..+-.+...+...... ..-.+++...+    .-+..+ +..+- .+........
T Consensus       213 ----~~~~~~~ali~~~~~dKpsI~~l~~~l~~~i~~~~~~p~~~~~~~~~~~----~~i~~~-d~~i~-~~~~~~~~~~  282 (997)
T 1vsy_5          213 ----DIGRLIFLLIECCRVNELEIGMYADKILTDIVIGIKIPSSVCVISDQAF----LPLAPP-DGTIN-LQVEAVKLAK  282 (997)
T ss_dssp             ----HHHHHHHHHHHTCSCSSSSTTTHHHHHHHHHHTSCCCCCSCCCCCGGGT----GGGCCS-CSSTT-SHHHHHHHHT
T ss_pred             ----HHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHhcccCchHHHHHHHHHH----hccCCC-cHHHH-HHHHHHHHHH
Confidence                1125667788887778888888776665555542211 00001111111    122222 21111 1111121111


Q ss_pred             cCCHHHHHHHHH--cCChHHHHHHHhc-CC--hhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHH
Q 011328          314 AGNVNQIQAIIE--AGIIGPLVNLLLN-AE--FEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVT  388 (488)
Q Consensus       314 ~~~~~~~~~l~~--~~~l~~L~~ll~~-~~--~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~  388 (488)
                         ...+....+  .++...|+++.++ .+  +.....++..|.++....+...     ...+++.+.+.+.++++.++.
T Consensus       283 ---~~~r~~~~~~~~~L~~~l~~~~~~~~h~~Wk~~~~~~~~l~~l~~r~d~~~-----~~~~v~~~~~~l~~dhp~~R~  354 (997)
T 1vsy_5          283 ---KKKREYYLSLLVDLQDKLLDKLDNEKDMGWKIRMFILRFVTQIQSNLESKP-----DKRAVFSIISQISTKHPEIIH  354 (997)
T ss_dssp             ---THHHHHHHHHHHHHHHHHHHHHHSSTTCCSCHHHHHHHHHHHHTCCSSCCC-----CHHHHHHHHGGGGGCCHHHHH
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhcCCCCC-----CHHHHHHHHHhhcCCCHHHHH
Confidence               111211211  2355556676633 36  8888888888777764331111     112466677888889999999


Q ss_pred             HHHHHHHHHHHh
Q 011328          389 VCLEGLENILKA  400 (488)
Q Consensus       389 ~al~~L~~l~~~  400 (488)
                      .++.++..++..
T Consensus       355 ~a~~~l~~il~~  366 (997)
T 1vsy_5          355 LVVKSLLSTCNK  366 (997)
T ss_dssp             HHHHHHTHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999998877755

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	488
d1wa5b_	503	a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S	1e-113
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	5e-93
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	8e-09
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	2e-46
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	5e-17
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	5e-16
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	2e-14
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	4e-09
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	7e-23
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	5e-22
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	3e-18
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	1e-15
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	1e-10
d1xqra1	264	a.118.1.21 (A:87-350) Hsp70-binding protein 1 (Hsp	1e-21
d1xqra1	264	a.118.1.21 (A:87-350) Hsp70-binding protein 1 (Hsp	7e-06
d2vgla_	584	a.118.1.10 (A:) Adaptin alpha C subunit N-terminal	9e-13
d2vgla_	584	a.118.1.10 (A:) Adaptin alpha C subunit N-terminal	5e-10
d1ibrb_	458	a.118.1.1 (B:) Importin beta {Human (Homo sapiens)	2e-12
d2vglb_	579	a.118.1.10 (B:) Adaptin beta subunit N-terminal fr	2e-12
d2vglb_	579	a.118.1.10 (B:) Adaptin beta subunit N-terminal fr	3e-11
d2vglb_	579	a.118.1.10 (B:) Adaptin beta subunit N-terminal fr	4e-10
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	5e-12
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	9e-09
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	2e-08
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	8e-05
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	0.001
d1qbkb_	888	a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi	2e-06
d1qbkb_	888	a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi	3e-06
d1qbkb_	888	a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi	0.002
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	2e-06
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	8e-05
d1oyza_	276	a.118.1.16 (A:) Hypothetical protein YibA {Escheri	1e-05
d1oyza_	276	a.118.1.16 (A:) Hypothetical protein YibA {Escheri	4e-05
d2bpta1	861	a.118.1.1 (A:1-861) Importin beta {Baker's yeast (	6e-05
d1lrva_	233	a.118.1.5 (A:) Leucine-rich repeat variant {Azotob	0.001
d1te4a_	111	a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium	0.004

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  342 bits (876), Expect = e-113
 Identities = 248/437 (56%), Positives = 308/437 (70%), Gaps = 6/437 (1%)

Query: 24  IIQLQLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLS 83
                 + LP M   + SDD   QL AT +FR++LS E  PPI+ VIQ+GVVPR +EF+ 
Sbjct: 70  FYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMR 129

Query: 84  RDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNV 143
            +    LQ EAAWALTNIASGTS  T+VV+D  AVP+F++LL + + +V+EQA+WALGNV
Sbjct: 130 ENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNV 189

Query: 144 AGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK-PQPLFEQTRPAL 202
           AGDS   RD VL   A+ P+L  FN + K S++R ATWTLSN CRGK PQP +     AL
Sbjct: 190 AGDSTDYRDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQAL 248

Query: 203 PALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPA 262
           P L +LI+S D E L DACWA+SYLSDG  + IQAVI+  +  RLVELL H S  V  PA
Sbjct: 249 PTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPA 308

Query: 263 LRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQA 322
           LR VGNIVTG+D+QTQ +IN   LP L  LL  + K++IKKEACWTISNITAGN  QIQA
Sbjct: 309 LRAVGNIVTGNDLQTQVVINAGVLPALRLLL-SSPKENIKKEACWTISNITAGNTEQIQA 367

Query: 323 IIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSN--EQIKFLVSQGCIKPLCDLLN 380
           +I+A +I PLV LL  AE++ KKEA WAISNA+SGG    + I++LVSQGCIKPLCDLL 
Sbjct: 368 VIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLE 427

Query: 381 CPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEI 440
             D RI+ V L+ LENILK GEA+K       +N  A  I+ A G+EKI N Q ++N +I
Sbjct: 428 IADNRIIEVTLDALENILKMGEADKEA-RGLNINENADFIEKAGGMEKIFNCQQNENDKI 486

Query: 441 YEKAVKILETYWVEEDE 457
           YEKA KI+ETY+ EE++
Sbjct: 487 YEKAYKIIETYFGEEED 503

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  287 bits (734), Expect = 5e-93
 Identities = 203/427 (47%), Positives = 282/427 (66%), Gaps = 12/427 (2%)

Query: 31  SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQL 90
           S+  +V G+ S++   QL AT   RKLLS E+ PPI+ +I++G++P+F+ FL + D   +
Sbjct: 14  SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 73

Query: 91  QFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC 150
           QFE+AWALTNIASGTSE T+ V+D GA+P F+ LL+SP   + EQAVWALGN+AGD    
Sbjct: 74  QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 133

Query: 151 RDLVLSNGALMPLLAQFN----EHAKLSMLRNATWTLSNFCRGKPQ-PLFEQTRPALPAL 205
           RDLV+ +GA+ PLLA              LRN TWTLSN CR K   P  +     LP L
Sbjct: 134 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 193

Query: 206 ERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRT 265
            RL+H ND EVL D+CWA+SYL+DG N++I+ V++ GV P+LV+LL      ++ PALR 
Sbjct: 194 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 253

Query: 266 VGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIE 325
           +GNIVTG D QTQ +I+  AL     LL  N K +I+KEA WT+SNITAG  +QIQ ++ 
Sbjct: 254 IGNIVTGTDEQTQKVIDAGALAVFPSLL-TNPKTNIQKEATWTMSNITAGRQDQIQQVVN 312

Query: 326 AGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPR 385
            G++  LV +L  A+F+ +KEAAWAI+N TSGG+ EQI +LV  G I+PL +LL+  D +
Sbjct: 313 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTK 372

Query: 386 IVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAV 445
           I+ V L+ + NI +A E        G     +  I++  GL+KIE LQ H+N  +Y+ ++
Sbjct: 373 IIQVILDAISNIFQAAE------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASL 426

Query: 446 KILETYW 452
            ++E Y+
Sbjct: 427 NLIEKYF 433

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 55.2 bits (131), Expect = 8e-09
 Identities = 42/232 (18%), Positives = 90/232 (38%), Gaps = 13/232 (5%)

Query: 3   WCWIDCFVCFSLLKPMDPMFFIIQLQLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIER 62
               D     S L         + ++   +P +V  + + +  I   A      +++   
Sbjct: 203 EVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTD 262

Query: 63  SPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFV 122
                +VI +G +  F   L+      +Q EA W ++NI +G  +  + V++HG VP  V
Sbjct: 263 -EQTQKVIDAGALAVFPSLLTNPKT-NIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLV 320

Query: 123 RLLSSPTDDVREQAVWALGNVA-GDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATW 181
            +LS      +++A WA+ N   G + +    ++  G + PL+   +      +++    
Sbjct: 321 GVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDT-KIIQVILD 379

Query: 182 TLSNFCRGKPQP--------LFEQTRPALPALERLIHSNDDEVLTDACWALS 225
            +SN  +   +         + E+    L  +E L    ++ V   +   + 
Sbjct: 380 AISNIFQAAEKLGETEKLSIMIEECG-GLDKIEALQRHENESVYKASLNLIE 430

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  165 bits (417), Expect = 2e-46
 Identities = 60/455 (13%), Positives = 125/455 (27%), Gaps = 69/455 (15%)

Query: 75  VPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVRE 134
           +P+ +++LS  D  + Q   A+ + +         + V   G +   V LL SP  +V++
Sbjct: 4   IPKAVQYLSSQD-EKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQ 62

Query: 135 QAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPL 194
            A  AL N+   S   +        +   ++         + +  T  L N         
Sbjct: 63  AAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKE 122

Query: 195 FEQTRPALPALERLI---------------HSNDDEVLTDACWALSYLSDGTNDKIQAVI 239
                      +R+I                  D EV  +A   L  LS     +     
Sbjct: 123 ELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRN 182

Query: 240 EAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQN--- 296
            +G+   L+  +++   +           +    ++  +           L+   +N   
Sbjct: 183 YSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYT 242

Query: 297 ----------YKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKE 346
                         +              N      +  +  I   +NL+  ++ +   E
Sbjct: 243 EKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLE 302

Query: 347 AAWAISNATSGGSNEQI-----KFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAG 401
           A        +               + +  +  +  LL   +  +V      L N+ +  
Sbjct: 303 ACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHP 362

Query: 402 EAEKNMGNTGGVNL----------------------------------FAQAIDDAEGLE 427
              + MGN     +                                   A+    +  L 
Sbjct: 363 LLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLN 422

Query: 428 KIENL-QSHDNTEIYEKAVKILETYWVEEDEDEPL 461
            I NL +S  + +  E A  +L   W  ++    L
Sbjct: 423 NIINLCRSSASPKAAEAARLLLSDMWSSKELQGVL 457

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.0 bits (198), Expect = 5e-17
 Identities = 44/308 (14%), Positives = 92/308 (29%), Gaps = 28/308 (9%)

Query: 72  SGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDD 131
           SG              P++ F A   L N++S  +    +    G +   +  + +    
Sbjct: 141 SGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAA 200

Query: 132 VR------EQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE-------HAKLSMLRN 178
            R      E  +  L N++                    A   +       +    M+ N
Sbjct: 201 SRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNN 260

Query: 179 ATWTLSNFCRGKPQPLFEQTRPAL--PALERLIHSNDDEVLTDACWALSYLSDGTNDKIQ 236
                       P+              L  +  S  D  L     AL  L+        
Sbjct: 261 NYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSS 320

Query: 237 A-----VIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLD 291
                  ++    P++  LL+  +  V+      + N+          ++ +Q  P +  
Sbjct: 321 GMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSR--HPLLHRVMGNQVFPEVTR 378

Query: 292 LLTQNYKKS-----IKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFE-IKK 345
           LLT +   +     I   AC+T+ N+ A      +    + ++  ++NL  ++      +
Sbjct: 379 LLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAE 438

Query: 346 EAAWAISN 353
            A   +S+
Sbjct: 439 AARLLLSD 446

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.9 bits (190), Expect = 5e-16
 Identities = 31/304 (10%), Positives = 82/304 (26%), Gaps = 21/304 (6%)

Query: 158 GALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKP---QPLFEQTRPALPALERLIHSNDD 214
           G  +P   Q+             + + + C       Q +++     +  L  L+ S + 
Sbjct: 1   GLTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLG--GICKLVDLLRSPNQ 58

Query: 215 EVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDD 274
            V   A  AL  L   +                V LLR    + +   L  +   ++  D
Sbjct: 59  NVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTD 118

Query: 275 MQTQCIINHQALPCLLDLL--------------TQNYKKSIKKEACWTISNITAGNVNQI 320
              + +I          ++               +     +   A   + N+++ +  + 
Sbjct: 119 ELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQ 178

Query: 321 QAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLC-DLL 379
                +G+I  L+  + N     + +     +      +             + L  +  
Sbjct: 179 TMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNAR 238

Query: 380 NCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEK-IENLQSHDNT 438
           N    +  T C     + +     +  +         +  +  ++ +   +  +      
Sbjct: 239 NAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKD 298

Query: 439 EIYE 442
              E
Sbjct: 299 ATLE 302

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.9 bits (177), Expect = 2e-14
 Identities = 46/337 (13%), Positives = 98/337 (29%), Gaps = 28/337 (8%)

Query: 1   MLWCWIDCFVCFSLLKPMDPMFFIIQLQLESLPAMVAGVWSDDRNIQLDATTQFRKLLSI 60
           +           +   P+     II                 D  +  +AT   R L S 
Sbjct: 114 LSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSA 173

Query: 61  ERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAA-------------WALTNIASGTSE 107
           + +        SG++   + ++          + +                  + +   +
Sbjct: 174 D-AGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQ 232

Query: 108 NTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQF 167
                 +           S+ +D +              +PK    +  + A+   L   
Sbjct: 233 LEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLM 292

Query: 168 NEHAKLSMLRNATWTLSNFCRGKPQPLFEQTR------PALPALERLIHSNDDEVLTDAC 221
            +  K + L      L N    K       ++        LP + RL+ S + +V+    
Sbjct: 293 GKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGA 352

Query: 222 WALSYLSDGTNDKIQAVIEAGVCPRLVELLRH------PSPSVLIPALRTVGNIVTGDDM 275
             LS +S   +  +  V+   V P +  LL         S  +L  A  TV N++     
Sbjct: 353 SLLSNMS--RHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQ 410

Query: 276 QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNI 312
             +   +   L  +++L   +      + A   +S++
Sbjct: 411 LAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDM 447

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.0 bits (133), Expect = 4e-09
 Identities = 21/130 (16%), Positives = 44/130 (33%), Gaps = 9/130 (6%)

Query: 67  NEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLS 126
              ++   +P+      +     +    A  L+N++         V+ +   P   RLL+
Sbjct: 325 LIGLKEKGLPQIARL-LQSGNSDVVRSGASLLSNMSR--HPLLHRVMGNQVFPEVTRLLT 381

Query: 127 S------PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNAT 180
           S       ++D+   A + + N+    P+      S+  L  ++      A       A 
Sbjct: 382 SHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAAR 441

Query: 181 WTLSNFCRGK 190
             LS+    K
Sbjct: 442 LLLSDMWSSK 451

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 99.2 bits (245), Expect = 7e-23
 Identities = 70/476 (14%), Positives = 127/476 (26%), Gaps = 87/476 (18%)

Query: 41  SDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTN 100
           ++D             L        +  + +SG +P  ++ L       + F A   L N
Sbjct: 71  TNDVETARCTAGTLHNL--SHHREGLLAIFKSGGIPALVKMLGSPV-DSVLFYAITTLHN 127

Query: 101 IASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGAL 160
           +          V   G +   V LL+             L  +A  + + + ++L++G  
Sbjct: 128 LLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGP 187

Query: 161 MPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDA 220
             L+     +    +L   +  L                  + AL   +      ++ + 
Sbjct: 188 QALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNC 247

Query: 221 CWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCI 280
            W L  LSD    +       G+   LV+LL     +V+  A   + N+   +      +
Sbjct: 248 LWTLRNLSDAATKQEG---MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMV 304

Query: 281 IN-----------------------------------------------HQALPCLLDLL 293
                                                            H  LP ++ LL
Sbjct: 305 CQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLL 364

Query: 294 TQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISN 353
                  + K     I N+     N    + E G I  LV LL+ A  + ++  +   + 
Sbjct: 365 HPPSHWPLIKATVGLIRNLALCPANH-APLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQ 423

Query: 354 ATSGGS--------------------NEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEG 393
                                           +     I     LL  P   I  V    
Sbjct: 424 QQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGV 483

Query: 394 LENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILE 449
           L  + +  EA             A+AI+       +  L    N  +   A  +L 
Sbjct: 484 LCELAQDKEA-------------AEAIEAEGATAPLTELLHSRNEGVATYAAAVLF 526

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 96.9 bits (239), Expect = 5e-22
 Identities = 65/488 (13%), Positives = 129/488 (26%), Gaps = 65/488 (13%)

Query: 26  QLQLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVI--QSGVVPRFIEFLS 83
           +L   ++P +   +  +D+ +   A     +L   E        I     +V   +  + 
Sbjct: 13  ELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKE---ASRHAIMRSPQMVSAIVRTMQ 69

Query: 84  RDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNV 143
             +  +     A  L N++    E    +   G +P  V++L SP D V   A+  L N+
Sbjct: 70  NTNDVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNL 128

Query: 144 AGDSPKCRDLVLSNGALMPLLAQ------------------------------------- 166
                  +  V   G L  ++A                                      
Sbjct: 129 LLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQ 188

Query: 167 -----FNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDAC 221
                   +    +L   +  L                  + AL   +      ++ +  
Sbjct: 189 ALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCL 248

Query: 222 WALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCII 281
           W L  LSD    +       G+   LV+LL     +V+  A   + N+   +      + 
Sbjct: 249 WTLRNLSDAATKQEG---MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVC 305

Query: 282 NHQALPCLLDLLTQNYKKSIKKE----ACWTISNITAGNVNQIQAIIEAGIIGPLVNLLL 337
               +  L+  + +   +    E    A   +++          A+     +  +V LL 
Sbjct: 306 QVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLH 365

Query: 338 NAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDP---------RIVT 388
                   +A   +    +            QG I  L  LL                  
Sbjct: 366 PPSHWPLIKATVGLIRNLALCPANHAPL-REQGAIPRLVQLLVRAHQDTQRRTSMGGTQQ 424

Query: 389 VCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKIL 448
             +EG+            +            I     +     L       I   A  +L
Sbjct: 425 QFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVL 484

Query: 449 ETYWVEED 456
                +++
Sbjct: 485 CELAQDKE 492

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.9 bits (208), Expect = 3e-18
 Identities = 64/410 (15%), Positives = 124/410 (30%), Gaps = 28/410 (6%)

Query: 11  CFSLLKPMDPMFFIIQLQLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVI 70
               L        +       L  MVA +   +       T   + L +         ++
Sbjct: 124 TLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQIL-AYGNQESKLIIL 182

Query: 71  QSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTD 130
            SG     +  +    + +L       +  + S  S N   +++ G +      L+ P+ 
Sbjct: 183 ASGGPQALVNIMRTYTYEKLL-WTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQ 241

Query: 131 DVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK 190
            + +  +W L N++  + K   +    G L+ LL   + +         +    N  + K
Sbjct: 242 RLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNK 301

Query: 191 PQPLFEQTRPALPAL--ERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLV 248
                     AL           +  E    A   L+           AV      P +V
Sbjct: 302 MMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVV 361

Query: 249 ELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKK--------- 299
           +LL  PS   LI A   +   +         +    A+P L+ LL + ++          
Sbjct: 362 KLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGG 421

Query: 300 ------------SIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEA 347
                        I +     +  +     N+   I     I   V LL +    I++ A
Sbjct: 422 TQQQFVEGVRMEEIVEGCTGALHILARDVHNR-IVIRGLNTIPLFVQLLYSPIENIQRVA 480

Query: 348 AWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENI 397
           A  +          +   + ++G   PL +LL+  +  + T     L  +
Sbjct: 481 AGVLCELAQDKEAAEA--IEAEGATAPLTELLHSRNEGVATYAAAVLFRM 528

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.2 bits (188), Expect = 1e-15
 Identities = 26/167 (15%), Positives = 60/167 (35%), Gaps = 2/167 (1%)

Query: 231 TNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLL 290
            N +  A +     P L +LL      V+  A   V  +   +  +   + + Q +  ++
Sbjct: 6   INYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIV 65

Query: 291 DLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWA 350
             +         +    T+ N++        AI ++G I  LV +L +    +   A   
Sbjct: 66  RTMQNTNDVETARCTAGTLHNLSHHREGL-LAIFKSGGIPALVKMLGSPVDSVLFYAITT 124

Query: 351 ISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENI 397
           + N            +   G ++ +  LLN  + + + +  + L+ +
Sbjct: 125 LHNLLL-HQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQIL 170

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.1 bits (146), Expect = 1e-10
 Identities = 29/172 (16%), Positives = 57/172 (33%), Gaps = 44/172 (25%)

Query: 57  LLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHG 116
           L+ +      +   ++ +     +F+      ++      AL  +A     N  V+    
Sbjct: 402 LVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARD-VHNRIVIRGLN 460

Query: 117 AVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSML 176
            +P+FV+LL SP ++++  A   L  +A D  +  + + + GA                 
Sbjct: 461 TIPLFVQLLYSPIENIQRVAAGVLCELAQD-KEAAEAIEAEGAT---------------- 503

Query: 177 RNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLS 228
                                       L  L+HS ++ V T A   L  +S
Sbjct: 504 --------------------------APLTELLHSRNEGVATYAAAVLFRMS 529

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 264

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.0 bits (227), Expect = 1e-21
 Identities = 46/260 (17%), Positives = 89/260 (34%), Gaps = 9/260 (3%)

Query: 60  IERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVP 119
           +E+      V+   + P   E     D  Q +  A   L ++     +N         + 
Sbjct: 4   VEQMKSCLRVLSQPMPPTAGEAEQAAD-QQEREGALELLADLCE-NMDNAADFCQLSGMH 61

Query: 120 IFV-RLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRN 178
           + V R L +    +R +A   +G  + +    ++ VL  GAL  LL   +  A  ++   
Sbjct: 62  LLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVK 121

Query: 179 ATWTLSNFCRGK-PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQA 237
           A + +S   R +    L          L R +     ++   + + L  L  G  +    
Sbjct: 122 ALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGT 181

Query: 238 VIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIIN-----HQALPCLLDL 292
           +   G+  +LV L+R          L  + ++VT      +          + L     L
Sbjct: 182 LCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQL 241

Query: 293 LTQNYKKSIKKEACWTISNI 312
           L Q+ +   + E C  +   
Sbjct: 242 LQQHEEYQEELEFCEKLLQT 261

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 264

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.4 bits (106), Expect = 7e-06
 Identities = 18/118 (15%), Positives = 40/118 (33%), Gaps = 2/118 (1%)

Query: 283 HQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAE-F 341
            Q +P       Q   +  ++ A   ++++   N++      +   +  LV   L A   
Sbjct: 15  SQPMPPTAGEAEQAADQQEREGALELLADL-CENMDNAADFCQLSGMHLLVGRYLEAGAA 73

Query: 342 EIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILK 399
            ++  AA  I   +   +  Q + L      K L  L       +    L  +  +++
Sbjct: 74  GLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVR 131

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.7 bits (161), Expect = 2e-12
 Identities = 49/318 (15%), Positives = 94/318 (29%), Gaps = 29/318 (9%)

Query: 3   WCWIDCFVCFSLLKPMDPMFFIIQLQLESLPAMVAGVWSDDRN--IQLDATTQFRKLLSI 60
                       +        +     E L A++ G+  ++ +  ++L AT      L  
Sbjct: 144 HMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEF 203

Query: 61  ERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPI 120
            ++    E  +  ++    E     D  +++  A   L  I S   +     +      I
Sbjct: 204 TKANFDKESERHFIMQVVCEATQCPD-TRVRVAALQNLVKIMSLYYQYMETYMGPALFAI 262

Query: 121 FVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNAT 180
            +  + S  D+V  Q +    NV  +                     ++      L+   
Sbjct: 263 TIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLV 322

Query: 181 WTLSNFCRGKPQPLFEQ-----------------------TRPALPALERLIHSNDDEVL 217
             L+     + +   +                            LP ++  I + D    
Sbjct: 323 PILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYR 382

Query: 218 TDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQT 277
             A  A   + +G        +     P L+EL++ PS  V   A  TVG I    ++  
Sbjct: 383 DAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRIC---ELLP 439

Query: 278 QCIINHQALPCLLDLLTQ 295
           +  IN   L  LL  L +
Sbjct: 440 EAAINDVYLAPLLQCLIE 457

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.3 bits (160), Expect = 5e-12
 Identities = 37/342 (10%), Positives = 104/342 (30%), Gaps = 13/342 (3%)

Query: 11  CFSLLKPMDPMFFIIQLQLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVI 70
           C   L      + +  +       M++          +   T   +L        +   +
Sbjct: 68  CLGPLVSKVKEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANV 127

Query: 71  QSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTD 130
              +  R    +++ +   +Q EA   + ++ S              +   +  L+SP  
Sbjct: 128 CKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPS-ILTCLLPQLTSPRL 186

Query: 131 DVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGK 190
            VR++ + ALG++          ++    +  LL++ +++  +S  R     ++   R  
Sbjct: 187 AVRKRTIIALGHLVMSCGN----IVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQA 242

Query: 191 PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVEL 250
              + E     +P + +  + +DDE+      A          ++   +   +    ++ 
Sbjct: 243 GHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVST-IINICLKY 301

Query: 251 LRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTIS 310
           L +       P           + M      +             +    +++ A   + 
Sbjct: 302 LTYD------PNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLD 355

Query: 311 NITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAIS 352
            + +     +    +  +   L++     E  +K +   A  
Sbjct: 356 AVVSTRHEMLPEFYKT-VSPALISRFKEREENVKADVFHAYL 396

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.9 bits (133), Expect = 9e-09
 Identities = 42/326 (12%), Positives = 95/326 (29%), Gaps = 49/326 (15%)

Query: 2    LWCWIDCFVCFSLLKPMDPMFFIIQLQLESLPAMVAGVWSDDRNIQLDATTQFRKLLSIE 61
            L             + +          ++ L  +   V+S    +    +          
Sbjct: 743  LLQGGALSAMLDFFQALVVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAA 802

Query: 62   RSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIF 121
             +    +   + V     +  +      ++  A  +L  +      + ++ +      + 
Sbjct: 803  LTRACPKEGPAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHHIDLSGQLEL----KSVI 858

Query: 122  VRLLSSPTDDVREQAVWALGNVA---------------GDSPKCRDLVLSN--------- 157
            +   SSP+++V+  A +ALG+++                  PK + L+L +         
Sbjct: 859  LEAFSSPSEEVKSAASYALGSISVGNLPEYLPFVLQEITSQPKRQYLLLHSLKEIISSAS 918

Query: 158  --------GALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLI 209
                      +  LL +  E A+          L       P+ L       LP L+  +
Sbjct: 919  VVGLKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTLIDPETL-------LPRLKGYL 971

Query: 210  HSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNI 269
             S      +    A+ +        I  +++       ++ L  P  +V   AL T  + 
Sbjct: 972  ISGSSYARSSVVTAVKFTISDHPQPIDPLLK-NCIGDFLKTLEDPDLNVRRVALVTFNSA 1030

Query: 270  VTGDDMQTQCIINH--QALPCLLDLL 293
                  +   I +     LP L +  
Sbjct: 1031 A---HNKPSLIRDLLDTVLPHLYNET 1053

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.4 bits (129), Expect = 2e-08
 Identities = 40/267 (14%), Positives = 84/267 (31%), Gaps = 10/267 (3%)

Query: 88  PQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDS 147
              +F A   L       S       +   V + ++LL     +V+  AV  LG +    
Sbjct: 17  KDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKV 76

Query: 148 PKCRDLVLSNGALMPLLAQFNE---HAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPA 204
            + +   + +  L   +    E         L+     L     G         +     
Sbjct: 77  KEYQVETIVD-TLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRL 135

Query: 205 LERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALR 264
              +    D  V  +A   ++ +       +     + +   L+  L  P  +V    + 
Sbjct: 136 TSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPS-ILTCLLPQLTSPRLAVRKRTII 194

Query: 265 TVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAII 324
            +G++V          +    +  LL  L++N   S  +     I+ I+    ++I   +
Sbjct: 195 ALGHLVMSCGNI----VFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYL 250

Query: 325 EAGIIGPLVNLLLNAEFEIKKEAAWAI 351
           E  II  +V      + E+++    A 
Sbjct: 251 EK-IIPLVVKFCNVDDDELREYCIQAF 276

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.8 bits (99), Expect = 8e-05
 Identities = 29/178 (16%), Positives = 54/178 (30%), Gaps = 15/178 (8%)

Query: 41   SDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTN 100
               + + L +  +     S+    P  E I + ++               +   A  L  
Sbjct: 900  PKRQYLLLHSLKEIISSASVVGLKPYVENIWALLLK-----HCECAEEGTRNVVAECLGK 954

Query: 101  IASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGAL 160
            +     E          +P     L S +   R   V A+     D P+  D +L N   
Sbjct: 955  LTLIDPET--------LLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLKN--C 1004

Query: 161  MPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLT 218
            +    +  E   L++ R A  T ++    KP  + +     LP L        + +  
Sbjct: 1005 IGDFLKTLEDPDLNVRRVALVTFNSAAHNKPSLIRDLLDTVLPHLYNETKVRKELIRE 1062

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (89), Expect = 0.001
 Identities = 36/252 (14%), Positives = 89/252 (35%), Gaps = 29/252 (11%)

Query: 205 LERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALR 264
           LE++  S+D +    A   L       + K+    E  V   +++LL   +  V   A++
Sbjct: 9   LEKM-TSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVK 67

Query: 265 TVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG-----NVNQ 319
            +G +V    ++   +     +  L   +  + K+ ++  +   +  +        + + 
Sbjct: 68  CLGPLV--SKVKEYQVE--TIVDTLCTNMLSD-KEQLRDISSIGLKTVIGELPPASSGSA 122

Query: 320 IQAIIEAGIIGPLVNLLLNAE-FEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDL 378
           + A +   I G L + +   E   ++ EA   +++  S      + F  S   +  L   
Sbjct: 123 LAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPS--ILTCLLPQ 180

Query: 379 LNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNT 438
           L  P   +    +  L +++ +           G  +F   I+       +  L  +D+ 
Sbjct: 181 LTSPRLAVRKRTIIALGHLVMS----------CGNIVFVDLIEHL-----LSELSKNDSM 225

Query: 439 EIYEKAVKILET 450
                 ++ +  
Sbjct: 226 STTRTYIQCIAA 237

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.1 bits (113), Expect = 2e-06
 Identities = 49/309 (15%), Positives = 99/309 (32%), Gaps = 13/309 (4%)

Query: 41  SDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTN 100
           S+D   +  +    +  +           +   +    +  +     P ++      +T 
Sbjct: 57  SEDEPTRSLSGLILKNNVK-AHFQNFPNGVTDFIKSECLNNIGDSS-PLIRATVGILITT 114

Query: 101 IASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNG-- 158
           IAS              +P    LL S   +  E A  AL  +  DS +  D  + +   
Sbjct: 115 IASKGELQNW----PDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPL 170

Query: 159 -ALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVL 217
             ++P   QF +H+   +  +A   ++ F   + Q L          L  L    + EV 
Sbjct: 171 NIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFTENLFALAGDEEPEVR 230

Query: 218 TDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQT 277
            + C AL  L +   D++   +   +   +++  +    +V   AL      +T  +   
Sbjct: 231 KNVCRALVMLLEVRMDRLLPHMH-NIVEYMLQRTQDQDENV---ALEACEFWLTLAEQPI 286

Query: 278 QCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLL 337
              +  + LP L+ +L    K S                +   +  I             
Sbjct: 287 CKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEEDETIPDSEQDIRPRFHRSRTVAQQ 346

Query: 338 NAEFEIKKE 346
           + E  I++E
Sbjct: 347 HDEDGIEEE 355

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.4 bits (111), Expect = 3e-06
 Identities = 48/383 (12%), Positives = 106/383 (27%), Gaps = 22/383 (5%)

Query: 42  DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNI 101
           D+ +     +    +  S      +  V +  ++P  +  L    F          +  +
Sbjct: 360 DEIDDDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVL 419

Query: 102 ASGTSENTRVVIDHGA--VPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGA 159
            +      + +I +    +P  ++ LS     VR    W L   A               
Sbjct: 420 GAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPL 479

Query: 160 LMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTD 219
           +  LL +  +  K  +   A    +         L       L  L         + L  
Sbjct: 480 MTELLKRILDSNK-RVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLI 538

Query: 220 ACWALSYLSDGTNDKI-QAVIEAGVCPRLVELLRHP--SPSVLIPALRTVGNIVTGDDM- 275
              A+  L+D     + +      + P L++           L P L  + ++ T     
Sbjct: 539 LYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSG 598

Query: 276 --------------QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQ 321
                           Q  +    L        +   K     A   +S +  G    I+
Sbjct: 599 FLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIE 658

Query: 322 AIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNC 381
            ++    I  L+   +  +    +++++A+    +    + +K  ++   +  L   LN 
Sbjct: 659 QLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIAD-FMPILGTNLNP 717

Query: 382 PDPRIVTVCLEGLENILKAGEAE 404
               +       +  I      E
Sbjct: 718 EFISVCNNATWAIGEISIQMGIE 740

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (89), Expect = 0.002
 Identities = 30/186 (16%), Positives = 65/186 (34%), Gaps = 17/186 (9%)

Query: 43  DRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIA 102
           D++  + A      L           V +S ++    + +  D  P+++  +   L ++ 
Sbjct: 635 DKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQ-DKMPEVRQSSFALLGDLT 693

Query: 103 SGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVA-----GDSPKCRDLVLSN 157
               ++ +  I    +PI    L+     V   A WA+G ++        P    ++   
Sbjct: 694 KACFQHVKPCIAD-FMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIPMVL--- 749

Query: 158 GALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQ---PLFEQTRPALPALERLIHSNDD 214
             L+ ++     +   ++L N   T+       PQ   P+ +Q          L +  D+
Sbjct: 750 HQLVEIIN--RPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPW--CTSLRNIRDN 805

Query: 215 EVLTDA 220
           E    A
Sbjct: 806 EEKDSA 811

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.9 bits (112), Expect = 2e-06
 Identities = 28/228 (12%), Positives = 68/228 (29%), Gaps = 13/228 (5%)

Query: 1   MLWCWIDCFVCFSLLKPMDPMFFIIQLQLESLPAMVAGVWSDDRNIQLDATTQFRKLLSI 60
           +     +  +              I+   +SL   +  +  D +     A  ++  LL+ 
Sbjct: 372 LKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAG 431

Query: 61  ERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPI 120
           +      +      +         D    ++  A   L  +     +          +P 
Sbjct: 432 QLGVEFFDEK----LNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEW---AHATIIPK 484

Query: 121 FVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNAT 180
            + +   P    R   ++ +  ++    +  D+   +  ++P + +       ++  N  
Sbjct: 485 VLAMSGDPNYLHRMTTLFCINVLSEVCGQ--DITTKH--MLPTVLRMAGDPVANVRFNVA 540

Query: 181 WTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLS 228
            +L            +      P LE+L    D +V   A  AL+ LS
Sbjct: 541 KSLQKIGPILDNSTLQSE--VKPILEKLTQDQDVDVKYFAQEALTVLS 586

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.9 bits (99), Expect = 8e-05
 Identities = 24/194 (12%), Positives = 59/194 (30%), Gaps = 12/194 (6%)

Query: 76  PRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQ 135
              I  L+ D   +++      +  +A           D     + +  L      +RE 
Sbjct: 404 LPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEF---FDEKLNSLCMAWLVDHVYAIREA 460

Query: 136 AVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLF 195
           A   L  +     K      ++  ++P +   +            + ++       Q + 
Sbjct: 461 ATSNLKKLVEKFGKE----WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDIT 516

Query: 196 EQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPS 255
            +    LP + R+       V  +   +L  +    ++     +++ V P L +L +   
Sbjct: 517 TKH--MLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNS---TLQSEVKPILEKLTQDQD 571

Query: 256 PSVLIPALRTVGNI 269
             V   A   +  +
Sbjct: 572 VDVKYFAQEALTVL 585

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Length = 276

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

 Score = 44.8 bits (104), Expect = 1e-05
 Identities = 24/254 (9%), Positives = 57/254 (22%), Gaps = 37/254 (14%)

Query: 84  RDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNV 143
            D     +  +A  L                  AV + +   S      R+   + LG +
Sbjct: 29  DDHNSLKRISSARVLQLRG-----------GQDAVRLAIEFCSDKNYIRRDIGAFILGQI 77

Query: 144 AGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALP 203
                   +          L           +   A  + +  C+  P      +   + 
Sbjct: 78  KICKKCEDN------VFNILNNMALNDKSACVRATAIESTAQRCKKNP----IYSPKIVE 127

Query: 204 ALERLIHSNDDEVLTDACWALSYLSDGT-----------NDKIQAVIEAGVCPRLVELLR 252
             +         V     +A+S ++D              +       A           
Sbjct: 128 QSQITAFDKSTNVRRATAFAISVINDKATIPLLINLLKDPNGDVRNWAAFAININKYDNS 187

Query: 253 HPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNI 312
                 +         +     +      + + L  L D L +N   ++  +       +
Sbjct: 188 DIRDCFVEMLQDKNEEVRIEAIIGLSYRKDKRVLSVLCDELKKN---TVYDDIIEAAGEL 244

Query: 313 TAGNVNQIQAIIEA 326
             G+   +  +   
Sbjct: 245 --GDKTLLPVLDTM 256

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Length = 276

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

 Score = 42.9 bits (99), Expect = 4e-05
 Identities = 27/285 (9%), Positives = 61/285 (21%), Gaps = 46/285 (16%)

Query: 122 VRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATW 181
            RLL       R  +   L    G               + L  +F             +
Sbjct: 25  FRLLDDHNSLKRISSARVLQLRGGQ------------DAVRLAIEFCSDKNYIRRDIGAF 72

Query: 182 TLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEA 241
            L      K     +        L  +  ++    +          S     K   +   
Sbjct: 73  ILGQIKICK-----KCEDNVFNILNNMALNDKSACVRATAI----ESTAQRCKKNPIYSP 123

Query: 242 GVCPRLVELLRHPSPSVLIPALRTVG----------NIVTGDDMQTQCIINHQALPCLLD 291
            +  +        S +V       +            I    D              +  
Sbjct: 124 KIVEQSQITAFDKSTNVRRATAFAISVINDKATIPLLINLLKDPNGDVRNWAAFAININK 183

Query: 292 LLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAI 351
               + +    +        +    +  +    +  ++  L + L      +  +   A 
Sbjct: 184 YDNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKDKRVLSVLCDELKKN--TVYDDIIEAA 241

Query: 352 SNATSGGSNEQIKFLVSQGCIKPLCDLLN-CPDPRIVTVCLEGLE 395
                         L  +  +  L  +L    D  I+T  ++ L+
Sbjct: 242 GE------------LGDKTLLPVLDTMLYKFDDNEIITSAIDKLK 274

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 861

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.3 bits (100), Expect = 6e-05
 Identities = 29/286 (10%), Positives = 80/286 (27%), Gaps = 43/286 (15%)

Query: 118 VPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLR 177
             +    + SP  ++R  +   L  ++ D+                     +       R
Sbjct: 7   AQLLENSILSPDQNIRLTSETQLKKLSNDNF--------LQFAGLSSQVLIDENTKLEGR 58

Query: 178 NATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQA 237
                                  A   L+  + S D              +     ++  
Sbjct: 59  IL---------------------AALTLKNELVSKDSVK-------TQQFAQRWITQVSP 90

Query: 238 VIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNY 297
             +  +    +  L    P +   A + +  I   +          + +  ++D      
Sbjct: 91  EAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGAW---PELMKIMVDNTGAEQ 147

Query: 298 KKSIKKEACWTISNITAGNVNQIQAIIEA--GIIGPLVNLLLNAEF--EIKKEAAWAISN 353
            +++K+ +   +  +      Q QA++ +   I+  +V    + E    ++  A  A+++
Sbjct: 148 PENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALAD 207

Query: 354 ATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILK 399
           +     N   +       ++ +C+     D  +       L  I+ 
Sbjct: 208 SLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMS 253

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} Length = 233

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

 Score = 38.2 bits (88), Expect = 0.001
 Identities = 24/164 (14%), Positives = 42/164 (25%), Gaps = 28/164 (17%)

Query: 115 HGAVPIFVRLLSSPTDDVREQAVWALG-----NVAGDSPKCRDLVLSNGALMPLLAQFNE 169
           +  V     L+    + VR    + L       +  D       +     L         
Sbjct: 65  YSPVEALTPLIRDSDEVVRRAVAYRLPREQLSALMFD-EDREVRITVADRLPL------- 116

Query: 170 HAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDAC--WALSYL 227
                M  +  + +  +   +  P           L R +   D +V            L
Sbjct: 117 EQLEQMAADRDYLVRAYVVQRIPP---------GRLFRFMRDEDRQVRKLVAKRLPEESL 167

Query: 228 SDGTNDKI----QAVIEAGVCPRLVELLRHPSPSVLIPALRTVG 267
              T D      + V        L+ELL  P  +V + A+    
Sbjct: 168 GLMTQDPEPEVRRIVASRLRGDDLLELLHDPDWTVRLAAVEHAS 211

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 111

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 34.9 bits (79), Expect = 0.004
 Identities = 17/140 (12%), Positives = 34/140 (24%), Gaps = 34/140 (24%)

Query: 125 LSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLS 184
           ++     VR     AL  +  +            A  PLL   +          A    +
Sbjct: 1   MADENKWVRRDVSTALSRMGDE------------AFEPLLESLSNEDWRIRGAAAWIIGN 48

Query: 185 NFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVC 244
                           A+  L +L+  +   V + A  +L  +                 
Sbjct: 49  FQD-----------ERAVEPLIKLLEDDSGFVRSGAARSLEQIGGERV-----------R 86

Query: 245 PRLVELLRHPSPSVLIPALR 264
             + +L    +      A+ 
Sbjct: 87  AAMEKLAETGTGFARKVAVN 106

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	488
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	100.0
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	100.0
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	100.0
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	100.0
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.95
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.92
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.81
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.77
d1b3ua_	588	Constant regulatory domain of protein phosphatase	99.77
d1b3ua_	588	Constant regulatory domain of protein phosphatase	99.72
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	99.69
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	99.57
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	99.49
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	99.48
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	99.4
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	99.33
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	99.33
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	99.3
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.28
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.25
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	99.19
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	99.17
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	99.14
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.06
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.98
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	98.98
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	98.76
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	98.74
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	98.43
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	98.32
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	97.65
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	97.51
d1wa5c_	959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	97.44
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	96.95
d1wa5c_	959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	96.72
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	96.52
d1lsha1	336	Lipovitellin-phosvitin complex, superhelical domai	96.31
d1lsha1	336	Lipovitellin-phosvitin complex, superhelical domai	95.9
d2bnxa1	343	Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {	95.03
d2bnxa1	343	Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {	94.74
d1ujka_	145	ADP-ribosylation factor binding protein Gga1 {Huma	91.69
d1mhqa_	143	ADP-ribosylation factor binding protein Gga2 {Huma	88.95
d2jaka1	343	Serine/threonine-protein phosphatase 2A regulatory	87.19
d1dvpa1	145	Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7	85.71
d1dvpa1	145	Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7	83.83
d2jaka1	343	Serine/threonine-protein phosphatase 2A regulatory	82.53
d1ujka_	145	ADP-ribosylation factor binding protein Gga1 {Huma	81.74
d1mhqa_	143	ADP-ribosylation factor binding protein Gga2 {Huma	80.28

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.8e-44  Score=357.90  Aligned_cols=426  Identities=58%  Similarity=0.893  Sum_probs=388.1

Q ss_pred             hccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchh
Q 011328           29 LESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN  108 (488)
Q Consensus        29 ~~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~  108 (488)
                      .+.++.+++.+.+++...+..|+..++++++.+..+..+.+++.|++|.|+++++++.+++++..|+++|.+++.+++..
T Consensus        75 ~~~l~~~~~~~~s~~~~~~~~a~~~~r~~ls~~~~~~i~~ii~~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~~  154 (503)
T d1wa5b_          75 QQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQ  154 (503)
T ss_dssp             -CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCCchHHHHHHCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHH
Confidence            36789999999999999999999999999987777788999999999999999987655889999999999999988888


Q ss_pred             hHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhc
Q 011328          109 TRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR  188 (488)
Q Consensus       109 ~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~  188 (488)
                      ...+.+.|+++.++.+|.+++.+++..|+|+|+|++.+++..+..+.+.|++++++.++ .+.+..++..++|++.+++.
T Consensus       155 ~~~~~~~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll-~~~~~~~~~~~~~~l~nl~~  233 (503)
T d1wa5b_         155 TKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLF-NSNKPSLIRTATWTLSNLCR  233 (503)
T ss_dssp             HHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGG-GSCCHHHHHHHHHHHHHHHC
T ss_pred             HHHHHhCCChHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHHHHHHHhhcccccchhhc-ccCCHHHHHHHHHHHHHHhc
Confidence            88999999999999999999999999999999999999999999999999999999999 67778899999999999998


Q ss_pred             CC-CCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHh
Q 011328          189 GK-PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVG  267 (488)
Q Consensus       189 ~~-~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~  267 (488)
                      .. +........+++|.+..++.+.+++++..+++++.+++...++....+.+.++++.++.++.++++.++..++.+++
T Consensus       234 ~~~~~~~~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~  313 (503)
T d1wa5b_         234 GKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVG  313 (503)
T ss_dssp             CSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred             CCccchHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhccCCchhhhhhhhhhhhhhhhhcccCCchhhhhhHHHHHH
Confidence            76 55566677899999999999999999999999999999888888888999999999999999999999999999999


Q ss_pred             HhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHH
Q 011328          268 NIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEA  347 (488)
Q Consensus       268 ~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a  347 (488)
                      +++.+.+.....+++.|+++.+..+++++ ++.++..++|+++|++.+++.....+++.|+++.++.++.+++.+++..|
T Consensus       314 nl~~~~~~~~~~~~~~~~l~~l~~ll~~~-~~~i~~~~~~~l~nl~~~~~~~~~~i~~~~~l~~li~~l~~~~~~v~~~a  392 (503)
T d1wa5b_         314 NIVTGNDLQTQVVINAGVLPALRLLLSSP-KENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEA  392 (503)
T ss_dssp             HHTTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHH
T ss_pred             HHHHHHHHHHHhhhccchHHHHHHHhcCC-CHHHHHHHHHHHHHHhhccHHHHHHHHHccccchhHHhcccCChhHHHHH
Confidence            99998888888888999999999999998 89999999999999999889999999999999999999999999999999


Q ss_pred             HHHHHHhccCC--CHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhcc
Q 011328          348 AWAISNATSGG--SNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEG  425 (488)
Q Consensus       348 ~~aL~~l~~~~--~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~  425 (488)
                      +|+|.|++..+  .++....+.+.|+++.|+++++..++++...++.+|.+++..++....... ...|.+...+++.|+
T Consensus       393 ~~~l~nl~~~~~~~~~~~~~l~~~~~l~~l~~~L~~~d~~~~~~~L~~l~~ll~~~~~~~~~~~-~~~~~~~~~iee~g~  471 (503)
T d1wa5b_         393 CWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARG-LNINENADFIEKAGG  471 (503)
T ss_dssp             HHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHT-CSSCHHHHHHHHTTH
T ss_pred             HHHHHHHHhcccccHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhc-ccchHHHHHHHHCCC
Confidence            99999998754  346778899999999999999999999999999999999987654332211 234678999999999


Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCC
Q 011328          426 LEKIENLQSHDNTEIYEKAVKILETYWVEEDE  457 (488)
Q Consensus       426 ~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~~~  457 (488)
                      ++.|+.|+++++++++++|.+++++||++|+|
T Consensus       472 ~~~i~~Lq~~~~~~i~~~A~~il~~~f~~~~~  503 (503)
T d1wa5b_         472 MEKIFNCQQNENDKIYEKAYKIIETYFGEEED  503 (503)
T ss_dssp             HHHHHGGGGCSCHHHHHHHHHHHHHHSSSCC-
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHcCCcCC
Confidence            99999999999999999999999999987765

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.1e-43  Score=344.81  Aligned_cols=418  Identities=49%  Similarity=0.826  Sum_probs=380.5

Q ss_pred             hccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchh
Q 011328           29 LESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN  108 (488)
Q Consensus        29 ~~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~  108 (488)
                      ...++.+++.|+|++++.+..|+..++++++...++....+++.|++|.|+++|++.+++++|..|+++|.+++..+++.
T Consensus        12 ~~~i~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~~~~   91 (434)
T d1q1sc_          12 NWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQ   91 (434)
T ss_dssp             SCCHHHHHHHHTSSCHHHHHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSCHHH
T ss_pred             hhhHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCChhh
Confidence            36789999999999999999999999999887766678889999999999999987655889999999999999888889


Q ss_pred             hHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccc----cHhHHHHHHHHHH
Q 011328          109 TRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHA----KLSMLRNATWTLS  184 (488)
Q Consensus       109 ~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~----~~~v~~~a~~~L~  184 (488)
                      +..+++.|+++.++.+|.++++++++.|+++|++++.+++..+..+.+.+++..++.++....    .......+++++.
T Consensus        92 ~~~i~~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~  171 (434)
T d1q1sc_          92 TKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLS  171 (434)
T ss_dssp             HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHH
T ss_pred             hhHhhhccchhhhhhccccCCHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHHHhcccccchHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999988999999999999999995432    2345678899999


Q ss_pred             HhhcCC-CCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHH
Q 011328          185 NFCRGK-PQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPAL  263 (488)
Q Consensus       185 ~l~~~~-~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~  263 (488)
                      +++... .........++++.+..++.+++++++..+++++.+++..++.....+.+.|+++.+++++.++++.++..++
T Consensus       172 ~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~al  251 (434)
T d1q1sc_         172 NLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPAL  251 (434)
T ss_dssp             HHTCCCTTCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHH
T ss_pred             HHhhcccccchhhhhhhHHHHHHHHHhccccchhhhHHhhhcccchhhhhhHHHHhhcccchhcccccccchhhhhhchh
Confidence            999876 4445556788999999999999999999999999999988877777788889999999999999999999999


Q ss_pred             HHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhH
Q 011328          264 RTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEI  343 (488)
Q Consensus       264 ~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v  343 (488)
                      .++.+++.+++.....+++.++++.+..+++++ +++++..+++++++++..+.+....+.+.|+++.++.++.++++++
T Consensus       252 ~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~li~~l~~~~~~v  330 (434)
T d1q1sc_         252 RAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKT  330 (434)
T ss_dssp             HHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHSSCHHH
T ss_pred             hhhhhHHhhhhHHHHHHHhccccchHHHhhccc-chhhhHHHHHHHhhhccccchhHHHHhhhhhHHHHHHHHhccChHH
Confidence            999999998888888889999999999999998 8999999999999999988888888999999999999999999999


Q ss_pred             HHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhh
Q 011328          344 KKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDA  423 (488)
Q Consensus       344 ~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~  423 (488)
                      +..|+++|.+++...+.+....+.+.|+++.|+++++.++++++..++++|.+++...+...      ..+.+...+++.
T Consensus       331 ~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~d~~~~~~~l~~l~~ll~~~~~~~------~~~~~~~~~~~~  404 (434)
T d1q1sc_         331 QKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLG------ETEKLSIMIEEC  404 (434)
T ss_dssp             HHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHTTT------CHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhcC------CcHHHHHHHHHc
Confidence            99999999999998888888999999999999999999999999999999999998776432      234578899999


Q ss_pred             ccHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 011328          424 EGLEKIENLQSHDNTEIYEKAVKILETYWV  453 (488)
Q Consensus       424 g~~~~L~~l~~~~~~~v~~~a~~~l~~~~~  453 (488)
                      |+++.|+.|++++|+++++.|.+++++||.
T Consensus       405 ~~~~~i~~L~~~~n~~i~~~a~~il~~~f~  434 (434)
T d1q1sc_         405 GGLDKIEALQRHENESVYKASLNLIEKYFS  434 (434)
T ss_dssp             TSHHHHHHHHTCSSHHHHHHHHHHHHHHCC
T ss_pred             CCHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence            999999999999999999999999999995

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.5e-33  Score=279.90  Aligned_cols=376  Identities=25%  Similarity=0.355  Sum_probs=329.6

Q ss_pred             CCCChhhHHHHhhhccHHHHHHHhcC-CCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHH
Q 011328           16 KPMDPMFFIIQLQLESLPAMVAGVWS-DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEA   94 (488)
Q Consensus        16 ~~~~~~~~~~~~~~~~i~~l~~~L~s-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a   94 (488)
                      .|++.+++.     |.+|.|++.|++ .++.++..|+++|.++++.. ......+.+.|+++.++.+|.+++ .+++..|
T Consensus       110 ~~i~~ii~~-----g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~-~~~~~~~~~~g~i~~l~~lL~s~~-~~i~~~a  182 (503)
T d1wa5b_         110 PPIDVVIQA-----GVVPRLVEFMRENQPEMLQLEAAWALTNIASGT-SAQTKVVVDADAVPLFIQLLYTGS-VEVKEQA  182 (503)
T ss_dssp             CSHHHHHHT-----TCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTCHHHHHHHHHHCC-HHHHHHH
T ss_pred             chHHHHHHC-----CChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHhCCChHHHHHHhcCCC-hhHHHHH
Confidence            345566667     999999999985 57889999999999988765 566777889999999999999998 8999999


Q ss_pred             HHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHh
Q 011328           95 AWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLS  174 (488)
Q Consensus        95 ~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~  174 (488)
                      +++|++++..+++.+..+.+.|+++.|+.++.+.+..++..++|++.+++.............++++.++.++ .+.++.
T Consensus       183 ~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~~~~~~~~~~~~~~l~~l~~~l-~~~d~~  261 (503)
T d1wa5b_         183 IWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI-YSMDTE  261 (503)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHT-TCCCHH
T ss_pred             HHHHHHHhhhhHHHHHHHHhhcccccchhhcccCCHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHh-ccccHH
Confidence            9999999998899999999999999999999999999999999999999977654445555667899999998 778899


Q ss_pred             HHHHHHHHHHHhhcCCCC-CChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCC
Q 011328          175 MLRNATWTLSNFCRGKPQ-PLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH  253 (488)
Q Consensus       175 v~~~a~~~L~~l~~~~~~-~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~  253 (488)
                      ++..++|++.+++...+. .......++++.++.++.+++..++..++.++++++...+.....+.+.|+++.+..++.+
T Consensus       262 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~nl~~~~~~~~~~~~~~~~l~~l~~ll~~  341 (503)
T d1wa5b_         262 TLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSS  341 (503)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTC
T ss_pred             HHHHHHHHHHhhccCCchhhhhhhhhhhhhhhhhcccCCchhhhhhHHHHHHHHHHHHHHHHHhhhccchHHHHHHHhcC
Confidence            999999999999986632 2344557899999999999999999999999999999888888888899999999999999


Q ss_pred             CCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhc---CCHHHHHHHHHcCChH
Q 011328          254 PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA---GNVNQIQAIIEAGIIG  330 (488)
Q Consensus       254 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~---~~~~~~~~l~~~~~l~  330 (488)
                      +++.++..+++++++++.+++.....+++.++++.++..+.+. +.+++.+|+|+++|++.   ..++....+++.|+++
T Consensus       342 ~~~~i~~~~~~~l~nl~~~~~~~~~~i~~~~~l~~li~~l~~~-~~~v~~~a~~~l~nl~~~~~~~~~~~~~l~~~~~l~  420 (503)
T d1wa5b_         342 PKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVA-EYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIK  420 (503)
T ss_dssp             SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHH
T ss_pred             CCHHHHHHHHHHHHHHhhccHHHHHHHHHccccchhHHhcccC-ChhHHHHHHHHHHHHHhcccccHHHHHHHHHCCcHH
Confidence            9999999999999999998888888889999999999999998 89999999999999996   2356778889999999


Q ss_pred             HHHHHHhcCChhHHHHHHHHHHHhccCC----------CHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHh
Q 011328          331 PLVNLLLNAEFEIKKEAAWAISNATSGG----------SNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKA  400 (488)
Q Consensus       331 ~L~~ll~~~~~~v~~~a~~aL~~l~~~~----------~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~  400 (488)
                      .|++++...+.++...++.+|.++...+          .......+.+.|+++.|..+..+++.++...|...|.+++..
T Consensus       421 ~l~~~L~~~d~~~~~~~L~~l~~ll~~~~~~~~~~~~~~~~~~~~iee~g~~~~i~~Lq~~~~~~i~~~A~~il~~~f~~  500 (503)
T d1wa5b_         421 PLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFGE  500 (503)
T ss_dssp             HHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHHSSS
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC
Confidence            9999999999999999999999987422          123445677889999999998899999999999888776643

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=5.4e-33  Score=270.58  Aligned_cols=372  Identities=26%  Similarity=0.406  Sum_probs=323.0

Q ss_pred             CChhhHHHHhhhccHHHHHHHhcC-CCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHH
Q 011328           18 MDPMFFIIQLQLESLPAMVAGVWS-DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAW   96 (488)
Q Consensus        18 ~~~~~~~~~~~~~~i~~l~~~L~s-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~   96 (488)
                      ++.++..     |.+|.|++.|++ +++++|..|+++|.++++.. .+....+++.|+++.++++|++++ ++++..|++
T Consensus        49 ~~~i~~~-----g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~-~~~~~~i~~~~~i~~l~~~L~~~~-~~~~~~a~~  121 (434)
T d1q1sc_          49 IDNIIRA-----GLIPKFVSFLGKTDCSPIQFESAWALTNIASGT-SEQTKAVVDGGAIPAFISLLASPH-AHISEQAVW  121 (434)
T ss_dssp             HHHHHHT-----TCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHH
T ss_pred             HHHHHHC-----CCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCC-hhhhhHhhhccchhhhhhccccCC-HHHHHHHHH
Confidence            4455666     999999999975 56889999999999988765 566788899999999999999998 999999999


Q ss_pred             HHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCC-----HHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccc
Q 011328           97 ALTNIASGTSENTRVVIDHGAVPIFVRLLSSPT-----DDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHA  171 (488)
Q Consensus        97 ~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~-----~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~  171 (488)
                      +|++++.++++.+..+.+.|+++.++.++...+     ......+++++.+++.............+.++.++.++ .+.
T Consensus       122 ~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll-~~~  200 (434)
T d1q1sc_         122 ALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL-HHN  200 (434)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHTCCCTTCCCHHHHHHHHHHHHHHT-TCS
T ss_pred             HHHHHhccchHHHHHHHHhhhhhHHHHHHHhcccccchHHHHHHHHHHHHHHhhcccccchhhhhhhHHHHHHHHH-hcc
Confidence            999999988899999999999999999997633     34567788999999887655545555556788888888 778


Q ss_pred             cHhHHHHHHHHHHHhhcCCC-CCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHh
Q 011328          172 KLSMLRNATWTLSNFCRGKP-QPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVEL  250 (488)
Q Consensus       172 ~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~l  250 (488)
                      +++++..+++++.+++...+ ........++++.+++++.+++..++..++.++.+++..++.....+++.|+++.+..+
T Consensus       201 ~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~l~~l  280 (434)
T d1q1sc_         201 DPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSL  280 (434)
T ss_dssp             CHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHH
T ss_pred             ccchhhhHHhhhcccchhhhhhHHHHhhcccchhcccccccchhhhhhchhhhhhhHHhhhhHHHHHHHhccccchHHHh
Confidence            89999999999999998753 22334457899999999999999999999999999998887777888899999999999


Q ss_pred             cCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhc-CCHHHHHHHHHcCCh
Q 011328          251 LRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITA-GNVNQIQAIIEAGII  329 (488)
Q Consensus       251 L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~l  329 (488)
                      +.+++++++..+++++++++.........+.+.++++.++.++.++ +..++..|+++++|++. .+.+....+.+.|++
T Consensus       281 l~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~li~~l~~~-~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i  359 (434)
T d1q1sc_         281 LTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA-DFKTQKEAAWAITNYTSGGTVEQIVYLVHCGII  359 (434)
T ss_dssp             TTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCH
T ss_pred             hcccchhhhHHHHHHHhhhccccchhHHHHhhhhhHHHHHHHHhcc-ChHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcH
Confidence            9999999999999999999998888888888999999999999998 89999999999999998 567788889999999


Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHHhccC-----CCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHH
Q 011328          330 GPLVNLLLNAEFEIKKEAAWAISNATSG-----GSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENIL  398 (488)
Q Consensus       330 ~~L~~ll~~~~~~v~~~a~~aL~~l~~~-----~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~  398 (488)
                      +.|++++.+++++++..++++|.++...     ..+.....+.+.|+++.|..+.++++++++..|.+.|.+.+
T Consensus       360 ~~L~~ll~~~d~~~~~~~l~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~n~~i~~~a~~il~~~f  433 (434)
T d1q1sc_         360 EPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYF  433 (434)
T ss_dssp             HHHHHHTTSSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTSHHHHHHHHTCSSHHHHHHHHHHHHHHC
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence            9999999999999999999999998742     23345667778899999999999999999999999887653

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-31  Score=267.92  Aligned_cols=401  Identities=19%  Similarity=0.214  Sum_probs=345.0

Q ss_pred             hccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchh
Q 011328           29 LESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN  108 (488)
Q Consensus        29 ~~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~  108 (488)
                      .|++|.|++.|+++++.++..|+++|.+++... ......+.+.|+++.|+.+|++++ ++++..+++++.+++..+++.
T Consensus       100 ~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~-~~~~~~~~~~g~i~~Lv~lL~~~~-~~~~~~a~~~L~~l~~~~~~~  177 (529)
T d1jdha_         100 SGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQES  177 (529)
T ss_dssp             TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHC-TTHHHHHHHHTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred             CCCHHHHHHHhCCCCHHHHHHHHHHHHHhhccc-chhhhHHHhcCCchHHHHHHHccC-hHHHHHHHHHHHHHhhhhhHH
Confidence            389999999999999999999999999988765 555677779999999999999999 999999999999999888889


Q ss_pred             hHHHHhCCCHHHHHHhhCC-CCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhh
Q 011328          109 TRVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFC  187 (488)
Q Consensus       109 ~~~~~~~g~i~~L~~~L~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~  187 (488)
                      +..+...|+++.++.++.+ +...++..+++++.+++.+. +.+..+.+.|+++.++.++ .+.+..++..+++++.+++
T Consensus       178 ~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~~-~~~~~~~~~g~~~~L~~ll-~~~~~~~~~~a~~~l~~ls  255 (529)
T d1jdha_         178 KLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCS-SNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNLS  255 (529)
T ss_dssp             HHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTST-THHHHHHHTTHHHHHHTTT-TSSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhccc-cccchhhhhhhhhhHHHHh-cccchhhhhhhhhHHHhcc
Confidence            9999999999999999965 56789999999999998754 4678889999999999999 7788899999999999998


Q ss_pred             cCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcC--CCCcchHhHHHHH
Q 011328          188 RGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR--HPSPSVLIPALRT  265 (488)
Q Consensus       188 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~--~~~~~v~~~a~~~  265 (488)
                      ....  ......++++.+++++.+++..++..++++|.+++..++.....+.+.++++.++..+.  ++.+.++..++.+
T Consensus       256 ~~~~--~~~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Li~~l~~~~~~~~~~~~a~~a  333 (529)
T d1jdha_         256 DAAT--KQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICA  333 (529)
T ss_dssp             TTCT--TCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             cccc--chhhhhhcchhhhhhcccccHHHHHHHHHHHHhhccchhHHHHHHHHhhhHHHHHHHHHhhhcchhHHHHHHHH
Confidence            6542  23334689999999999999999999999999999888777788889999999999884  4567889999999


Q ss_pred             HhHhhcCCch---hhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCC--
Q 011328          266 VGNIVTGDDM---QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAE--  340 (488)
Q Consensus       266 L~~l~~~~~~---~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~--  340 (488)
                      |++++.....   ....+...++++.++.++.++.+..++..+++++.|++.. ++....+.+.|+++.+++++.+.+  
T Consensus       334 L~~l~~~~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~~~~~~~~~l~~l~~~-~~~~~~l~~~g~i~~L~~lL~~~~~~  412 (529)
T d1jdha_         334 LRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC-PANHAPLREQGAIPRLVQLLVRAHQD  412 (529)
T ss_dssp             HHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTS-GGGHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             hhcccchhhcchhhhhhHHhcccchhHHHHHhccchHHHHHHHHHHHhhcchh-hhhhhhhhhcccHHHHHHHHhcCCHH
Confidence            9999975442   3344557899999999998875677888999999999876 566778889999999999997643  


Q ss_pred             --------------------hhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHh
Q 011328          341 --------------------FEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKA  400 (488)
Q Consensus       341 --------------------~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~  400 (488)
                                          .++...++.++..++.  .+..+..+.+.|+++.|++++.++++.++..++.+|.++...
T Consensus       413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~la~--~~~~r~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~  490 (529)
T d1jdha_         413 TQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILAR--DVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD  490 (529)
T ss_dssp             HC-----------CBTTBCHHHHHHHHHHHHHHHTT--SHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHhhhhhHHhhcccchHHHHHHHHHHHHHHcc--CHHHHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcC
Confidence                                3456677788888875  356677788899999999999999999999999999998654


Q ss_pred             hhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 011328          401 GEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETY  451 (488)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~~~~~v~~~a~~~l~~~  451 (488)
                      .+             ..+.+.+.|+++.|.++++++|+.++..|..+|.++
T Consensus       491 ~~-------------~~~~i~~~g~~~~L~~Ll~s~n~~v~~~a~~aL~~l  528 (529)
T d1jdha_         491 KE-------------AAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM  528 (529)
T ss_dssp             HH-------------HHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred             hh-------------hHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence            33             367899999999999999999999999999998875

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.4e-31  Score=262.11  Aligned_cols=404  Identities=16%  Similarity=0.158  Sum_probs=342.2

Q ss_pred             ccHHHHHHHhcC-CCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchh
Q 011328           30 ESLPAMVAGVWS-DDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSEN  108 (488)
Q Consensus        30 ~~i~~l~~~L~s-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~  108 (488)
                      +.++.+++.|++ ++++++..|+.+|.++.. . .+....+++.|+++.|+++|++++ ++++..|+++|.+++.+++..
T Consensus        59 ~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~-~-~~~~~~i~~~g~i~~Li~lL~~~~-~~v~~~a~~aL~~l~~~~~~~  135 (529)
T d1jdha_          59 QMVSAIVRTMQNTNDVETARCTAGTLHNLSH-H-REGLLAIFKSGGIPALVKMLGSPV-DSVLFYAITTLHNLLLHQEGA  135 (529)
T ss_dssp             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT-S-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHCTTH
T ss_pred             hHHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-C-chhHHHHHHCCCHHHHHHHhCCCC-HHHHHHHHHHHHHhhcccchh
Confidence            678999999974 678999999999999754 3 577788899999999999999999 999999999999999978888


Q ss_pred             hHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhc
Q 011328          109 TRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR  188 (488)
Q Consensus       109 ~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~  188 (488)
                      +..+.+.|+++.|+.++++++++++..+++++.+++..++..+..+.+.|+++.++.++..+++..++..+++++.+++.
T Consensus       136 ~~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~  215 (529)
T d1jdha_         136 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV  215 (529)
T ss_dssp             HHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT
T ss_pred             hhHHHhcCCchHHHHHHHccChHHHHHHHHHHHHHhhhhhHHHHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhc
Confidence            88899999999999999999999999999999999988888888899999999999999767778899999999999998


Q ss_pred             CCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhH
Q 011328          189 GKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN  268 (488)
Q Consensus       189 ~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~  268 (488)
                      +..........++++.+..++.+++..++..+++++.+++......   ....++++.|++++.++++.++..++++|++
T Consensus       216 ~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~l~~ls~~~~~~---~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~  292 (529)
T d1jdha_         216 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSN  292 (529)
T ss_dssp             STTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTC---SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             cccccchhhhhhhhhhHHHHhcccchhhhhhhhhHHHhccccccch---hhhhhcchhhhhhcccccHHHHHHHHHHHHh
Confidence            7666666677899999999999999999999999999998654322   2223778999999999999999999999999


Q ss_pred             hhcCCchhhHHHhhCCChHHHHHHhcc-cchhhHHHHHHHHHHHHhcCC---HHHHHHHHHcCChHHHHHHHhcC-ChhH
Q 011328          269 IVTGDDMQTQCIINHQALPCLLDLLTQ-NYKKSIKKEACWTISNITAGN---VNQIQAIIEAGIIGPLVNLLLNA-EFEI  343 (488)
Q Consensus       269 l~~~~~~~~~~~~~~~~~~~L~~lL~~-~~~~~v~~~a~~~L~nl~~~~---~~~~~~l~~~~~l~~L~~ll~~~-~~~v  343 (488)
                      ++..++.....+.+.++++.++..+.. ...+.++..+++++.+++...   ......+...+.++.++.++..+ +..+
T Consensus       293 l~~~~~~~~~~i~~~~~i~~Li~~l~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~~  372 (529)
T d1jdha_         293 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPL  372 (529)
T ss_dssp             HTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHH
T ss_pred             hccchhHHHHHHHHhhhHHHHHHHHHhhhcchhHHHHHHHHhhcccchhhcchhhhhhHHhcccchhHHHHHhccchHHH
Confidence            999888888888899999999998853 225678999999999999742   23444566789999999999876 4568


Q ss_pred             HHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCC----------------------HHHHHHHHHHHHHHHHhh
Q 011328          344 KKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPD----------------------PRIVTVCLEGLENILKAG  401 (488)
Q Consensus       344 ~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~----------------------~~v~~~al~~L~~l~~~~  401 (488)
                      +..+++++.+++...  +....+.+.|+++.|++++.+.+                      ++++..+..++..+....
T Consensus       373 ~~~~~~~l~~l~~~~--~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~la~~~  450 (529)
T d1jdha_         373 IKATVGLIRNLALCP--ANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDV  450 (529)
T ss_dssp             HHHHHHHHHHHTTSG--GGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTTSH
T ss_pred             HHHHHHHHhhcchhh--hhhhhhhhcccHHHHHHHHhcCCHHHHHHHHhhhhhHHhhcccchHHHHHHHHHHHHHHccCH
Confidence            889999999998754  56678899999999999986433                      345566666666554322


Q ss_pred             hhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCC
Q 011328          402 EAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVE  454 (488)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~  454 (488)
                      .             .+..+.+.|+++.|.+++.+++++++..|...+.++...
T Consensus       451 ~-------------~r~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~  490 (529)
T d1jdha_         451 H-------------NRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD  490 (529)
T ss_dssp             H-------------HHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTS
T ss_pred             H-------------HHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcC
Confidence            2             266788899999999999999999999999999988654

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.3e-25  Score=218.24  Aligned_cols=369  Identities=17%  Similarity=0.185  Sum_probs=281.3

Q ss_pred             CCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHH
Q 011328           73 GVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRD  152 (488)
Q Consensus        73 ~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~  152 (488)
                      ..+|.|+++|++++ ++++..|+++|++++.++++.+..+.+.|+++.|+++|++++++++..|+++|.+++.++++.+.
T Consensus         2 ~~ip~lv~~L~~~~-~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~   80 (457)
T d1xm9a1           2 LTIPKAVQYLSSQD-EKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKL   80 (457)
T ss_dssp             CCHHHHHHHHHSSC-THHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred             CCHHHHHHHhCCCC-HHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence            46899999999999 99999999999999998999999999999999999999999999999999999999998888899


Q ss_pred             HHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhh----------------ccCChhH
Q 011328          153 LVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLI----------------HSNDDEV  216 (488)
Q Consensus       153 ~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll----------------~~~~~~v  216 (488)
                      .+.+.|+++.++.++....++.++..+++++.+++.......... ...++.++..+                ...+..+
T Consensus        81 ~i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v  159 (457)
T d1xm9a1          81 ETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELI-ADALPVLADRVIIPFSGWCDGNSNMSREVVDPEV  159 (457)
T ss_dssp             HHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHH-HHHHHHHHHHTTHHHHTCC---------CCCHHH
T ss_pred             HHHHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhhHHHHH-hcccHHHHHHHHhhhhhhhcchhhhhcccccHHH
Confidence            999999999999999777888999999999999998764333333 33344443332                2346889


Q ss_pred             HHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCC------CcchHhHHHHHHhHhh--------------------
Q 011328          217 LTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP------SPSVLIPALRTVGNIV--------------------  270 (488)
Q Consensus       217 ~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~------~~~v~~~a~~~L~~l~--------------------  270 (488)
                      +..+++++.+++...+.........|+++.++.++.+.      .......+...+....                    
T Consensus       160 ~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  239 (457)
T d1xm9a1         160 FFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARN  239 (457)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC--
T ss_pred             HHHHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhh
Confidence            99999999999887765555445557788888776431      1111111111111110                    


Q ss_pred             ------------------------------cCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCH---
Q 011328          271 ------------------------------TGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNV---  317 (488)
Q Consensus       271 ------------------------------~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~---  317 (488)
                                                    .........+...++++.++.++.+..++.++..+.+++.+++....   
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~  319 (457)
T d1xm9a1         240 AYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMS  319 (457)
T ss_dssp             --------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHH
T ss_pred             hhhHHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHHhhccccch
Confidence                                          00111222233445677788887766578889999999999987422   


Q ss_pred             --HHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCC------CCHHHHHH
Q 011328          318 --NQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNC------PDPRIVTV  389 (488)
Q Consensus       318 --~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~------~~~~v~~~  389 (488)
                        .....+.+.++++.|+.++.+++++++..+++++.+++...  +....+. .++++.++.++..      .+++++..
T Consensus       320 ~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~~--~~~~~i~-~~~i~~li~~L~~~~~~~~~~~~v~~~  396 (457)
T d1xm9a1         320 SGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHP--LLHRVMG-NQVFPEVTRLLTSHTGNTSNSEDILSS  396 (457)
T ss_dssp             HHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSG--GGHHHHH-HHTHHHHHHTTTSCCSCSTTHHHHHHH
T ss_pred             HHHHHHHHHHcCChHHHHhhhcCccHHHHHHHHHHHHHHhhCh--hHHHHHH-HhhHHHHHHHHhccccCcCCcHHHHHH
Confidence              12233446789999999999999999999999999998754  4444444 4688999998863      23578899


Q ss_pred             HHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcC-CCHHHHHHHHHHHHHhcCCCCCC
Q 011328          390 CLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSH-DNTEIYEKAVKILETYWVEEDED  458 (488)
Q Consensus       390 al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~-~~~~v~~~a~~~l~~~~~~~~~~  458 (488)
                      ++.+|.++....+.            .+..+.+.|+++.|.++..+ +++++++.|..+|.++|..++-.
T Consensus       397 a~~~L~~l~~~~~~------------~~~~l~~~g~i~~L~~l~~~~~~~~~~~aA~~~L~~L~~~~~~~  454 (457)
T d1xm9a1         397 ACYTVRNLMASQPQ------------LAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKELQ  454 (457)
T ss_dssp             HHHHHHHHHTTCTH------------HHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTTCS
T ss_pred             HHHHHHHHhcCCHH------------HHHHHHHCCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHcCHhhH
Confidence            99999999865443            36778899999999999755 67899999999999999776543

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.9e-24  Score=209.90  Aligned_cols=363  Identities=15%  Similarity=0.178  Sum_probs=270.5

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh
Q 011328           30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT  109 (488)
Q Consensus        30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~  109 (488)
                      ..||.|++.|++++++++..|+++|.+++.++ .+....+.+.|++|.|+++|++++ +++|..|+++|.+++.++++.+
T Consensus         2 ~~ip~lv~~L~~~~~~~~~~a~~~l~~l~~~~-~~~~~~i~~~g~i~~Lv~lL~~~~-~~v~~~a~~aL~~L~~~~~~~~   79 (457)
T d1xm9a1           2 LTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQD-ESAKQQVYQLGGICKLVDLLRSPN-QNVQQAAAGALRNLVFRSTTNK   79 (457)
T ss_dssp             CCHHHHHHHHHSSCTHHHHHHHHHHHHHTSSC-SSHHHHHHHTTHHHHHHHHTTSSC-HHHHHHHHHHHHHHHSSCHHHH
T ss_pred             CCHHHHHHHhCCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHHCCcHHHHHHHHCCCC-HHHHHHHHHHHHHHHcCCHHHH
Confidence            35899999999999999999999999987654 678899999999999999999998 9999999999999998889999


Q ss_pred             HHHHhCCCHHHHHHhhCC-CCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHh---------------cccccH
Q 011328          110 RVVIDHGAVPIFVRLLSS-PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQF---------------NEHAKL  173 (488)
Q Consensus       110 ~~~~~~g~i~~L~~~L~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll---------------~~~~~~  173 (488)
                      ..+.+.|+++.++.++.+ .+++++..+++++.+++..... +...... +++.++..+               ....+.
T Consensus        80 ~~i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~-~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  157 (457)
T d1xm9a1          80 LETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDEL-KEELIAD-ALPVLADRVIIPFSGWCDGNSNMSREVVDP  157 (457)
T ss_dssp             HHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSST-HHHHHHH-HHHHHHHHTTHHHHTCC---------CCCH
T ss_pred             HHHHHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhh-HHHHHhc-ccHHHHHHHHhhhhhhhcchhhhhcccccH
Confidence            999999999999998875 7889999999999999987653 3333332 334444433               133467


Q ss_pred             hHHHHHHHHHHHhhcCCCCCChh-hhhchHHHHHHhhccC------ChhHHHHHHHHHHHhcc-----------------
Q 011328          174 SMLRNATWTLSNFCRGKPQPLFE-QTRPALPALERLIHSN------DDEVLTDACWALSYLSD-----------------  229 (488)
Q Consensus       174 ~v~~~a~~~L~~l~~~~~~~~~~-~~~~~~~~l~~ll~~~------~~~v~~~al~~L~~l~~-----------------  229 (488)
                      .++..+++++.+++......... ...++++.++.++++.      .......+...+.....                 
T Consensus       158 ~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  237 (457)
T d1xm9a1         158 EVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNA  237 (457)
T ss_dssp             HHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhh
Confidence            88999999999998775333222 3357788888877532      11112222222211110                 


Q ss_pred             ---------------------------------CCchhHHHHHHhCCHHHHHHhcCC-CCcchHhHHHHHHhHhhcCCch
Q 011328          230 ---------------------------------GTNDKIQAVIEAGVCPRLVELLRH-PSPSVLIPALRTVGNIVTGDDM  275 (488)
Q Consensus       230 ---------------------------------~~~~~~~~~~~~~~l~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~  275 (488)
                                                       ........+...++++.++.++.. .++.++..+.+++.+++.....
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~  317 (457)
T d1xm9a1         238 RNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGL  317 (457)
T ss_dssp             ----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSS
T ss_pred             hhhhhHHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHHhhcccc
Confidence                                             000011112223455666666644 4567888889999998875432


Q ss_pred             -----hhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC------ChhHH
Q 011328          276 -----QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA------EFEIK  344 (488)
Q Consensus       276 -----~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~------~~~v~  344 (488)
                           ....+.+.++++.++++++++ ++.++..+++++++++.. ++....+. .++++.++.++...      +.+++
T Consensus       318 ~~~~~~~~~~~~~~~l~~L~~~l~~~-~~~v~~~a~~~l~~La~~-~~~~~~i~-~~~i~~li~~L~~~~~~~~~~~~v~  394 (457)
T d1xm9a1         318 MSSGMSQLIGLKEKGLPQIARLLQSG-NSDVVRSGASLLSNMSRH-PLLHRVMG-NQVFPEVTRLLTSHTGNTSNSEDIL  394 (457)
T ss_dssp             HHHHHHHHHHTTSCCHHHHHHHTTCS-CHHHHHHHHHHHHHHHTS-GGGHHHHH-HHTHHHHHHTTTSCCSCSTTHHHHH
T ss_pred             chHHHHHHHHHHcCChHHHHhhhcCc-cHHHHHHHHHHHHHHhhC-hhHHHHHH-HhhHHHHHHHHhccccCcCCcHHHH
Confidence                 233445789999999999999 999999999999999875 44444444 46899999988653      35689


Q ss_pred             HHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCC-CHHHHHHHHHHHHHHHHh
Q 011328          345 KEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCP-DPRIVTVCLEGLENILKA  400 (488)
Q Consensus       345 ~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~al~~L~~l~~~  400 (488)
                      ..++.+|.+++.. +++..+.+.+.|+++.|++++++. ++.++..|..+|.+++..
T Consensus       395 ~~a~~~L~~l~~~-~~~~~~~l~~~g~i~~L~~l~~~~~~~~~~~aA~~~L~~L~~~  450 (457)
T d1xm9a1         395 SSACYTVRNLMAS-QPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSS  450 (457)
T ss_dssp             HHHHHHHHHHHTT-CTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSS
T ss_pred             HHHHHHHHHHhcC-CHHHHHHHHHCCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHcC
Confidence            9999999999865 457788889999999999998765 578899999999998644

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=2.4e-19  Score=160.79  Aligned_cols=194  Identities=18%  Similarity=0.183  Sum_probs=174.5

Q ss_pred             hhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHH-hhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHH
Q 011328           88 PQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVR-LLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQ  166 (488)
Q Consensus        88 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~-~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~l  166 (488)
                      .+.+..|+.+|.+++. +.+++..+...|+++.++. +++++++++|..|+++|++++.+++..+..+.+.|+++.++.+
T Consensus        31 ~~~~~~Al~~L~~L~~-~~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~l  109 (264)
T d1xqra1          31 QQEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL  109 (264)
T ss_dssp             HHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHc-CHHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHH
Confidence            6789999999999997 7888888999999999886 7788999999999999999999999889999999999999999


Q ss_pred             hcccccHhHHHHHHHHHHHhhcCCC-CCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHH
Q 011328          167 FNEHAKLSMLRNATWTLSNFCRGKP-QPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCP  245 (488)
Q Consensus       167 l~~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~  245 (488)
                      +.++.++.++..++++|.+++.+.+ ........++++.+++++++++..++..++++|.+++..+++....+.+.|+++
T Consensus       110 L~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~v~  189 (264)
T d1xqra1         110 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQ  189 (264)
T ss_dssp             HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHH
T ss_pred             hhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHHHHHHHhhhHH
Confidence            9767788999999999999998873 344556688999999999999999999999999999988777888899999999


Q ss_pred             HHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhh
Q 011328          246 RLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIIN  282 (488)
Q Consensus       246 ~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~  282 (488)
                      .|+.++.++++.++..++++|++++..++........
T Consensus       190 ~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~  226 (264)
T d1xqra1         190 QLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECRE  226 (264)
T ss_dssp             HHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHC
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            9999999999999999999999999887766655543

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=5.6e-18  Score=151.67  Aligned_cols=228  Identities=17%  Similarity=0.164  Sum_probs=186.2

Q ss_pred             CChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHH-hcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHH
Q 011328          212 NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVE-LLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLL  290 (488)
Q Consensus       212 ~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~-lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~  290 (488)
                      .+...+..|+.+|.+++...+ ....+...|+++.++. ++++++++++..|+++|++++.+++.....+.+.++++.|+
T Consensus        29 ~~~~~~~~Al~~L~~L~~~~d-~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv  107 (264)
T d1xqra1          29 ADQQEREGALELLADLCENMD-NAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLL  107 (264)
T ss_dssp             HHHHHHHHHHHHHHHHHTSHH-HHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHcCHH-HHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHH
Confidence            456788999999999996654 4566888899998875 67889999999999999999998888888888999999999


Q ss_pred             HHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCC
Q 011328          291 DLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQG  370 (488)
Q Consensus       291 ~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~  370 (488)
                      +++.+..++.++..+++++++++.+++.....+...|+++.|+.++.+++..++..++++|.+++.. +++....+.+.|
T Consensus       108 ~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~~  186 (264)
T d1xqra1         108 RLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVG-HPEHKGTLCSMG  186 (264)
T ss_dssp             HHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHTT
T ss_pred             HHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhc-cHHHHHHHHHhh
Confidence            9997655788999999999999998899899999999999999999999999999999999999865 346678888999


Q ss_pred             ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHh--hcc---HHHHHHhhcC--CCHHHHHH
Q 011328          371 CIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDD--AEG---LEKIENLQSH--DNTEIYEK  443 (488)
Q Consensus       371 ~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~--~g~---~~~L~~l~~~--~~~~v~~~  443 (488)
                      +++.|+.++++++++++..++++|.++....+...            ..+..  .+.   ++.+.+....  +..+..+.
T Consensus       187 ~v~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~------------~~~~~~~l~~~~~L~~~~~~~~~~~~~~e~~~~  254 (264)
T d1xqra1         187 MVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGV------------RECREPELGLEELLRHRCQLLQQHEEYQEELEF  254 (264)
T ss_dssp             HHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHH------------HHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred             hHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCHHHH------------HHHHHhhhhHHHHHHHHHHhccchHHHHHHHHH
Confidence            99999999999999999999999999986544321            11221  111   2222233222  24555678


Q ss_pred             HHHHHHHhcC
Q 011328          444 AVKILETYWV  453 (488)
Q Consensus       444 a~~~l~~~~~  453 (488)
                      +..+++.+|+
T Consensus       255 ~~~ll~~~~~  264 (264)
T d1xqra1         255 CEKLLQTCFS  264 (264)
T ss_dssp             HHHHHHHHCC
T ss_pred             HHHHHHHhcC
Confidence            8888888874

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=5.9e-17  Score=162.64  Aligned_cols=383  Identities=11%  Similarity=0.121  Sum_probs=268.2

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh
Q 011328           30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT  109 (488)
Q Consensus        30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~  109 (488)
                      ..++.+.++++++++.+|..++..+..++....    .......+++.+..++++++ +.+|..|+.++..++...+.. 
T Consensus       164 ~l~~~~~~l~~D~~~~VR~~a~~~l~~~~~~~~----~~~~~~~l~~~l~~l~~d~~-~~vr~~a~~~l~~i~~~~~~~-  237 (588)
T d1b3ua_         164 ELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLE----LDNVKSEIIPMFSNLASDEQ-DSVRLLAVEACVNIAQLLPQE-  237 (588)
T ss_dssp             HHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSC----HHHHHHTHHHHHHHHHTCSC-HHHHTTHHHHHHHHHHHSCHH-
T ss_pred             HHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhc----HHHHHHHHHHHHHHHhcCCc-hhhHHHHHHHHHHhhccCCHH-
Confidence            456777888889999999999999999887542    22334577888999999888 899999999999987622221 


Q ss_pred             HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcC
Q 011328          110 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG  189 (488)
Q Consensus       110 ~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~  189 (488)
                        -....+++.+..+++++++.+|..++.+|+.++..-.   ........++.+..++ .+.+..++..++.++..++..
T Consensus       238 --~~~~~i~~~l~~~~~D~~~~Vr~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~ll-~d~~~~vr~~a~~~l~~~~~~  311 (588)
T d1b3ua_         238 --DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVG---PEITKTDLVPAFQNLM-KDCEAEVRAAASHKVKEFCEN  311 (588)
T ss_dssp             --HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHC---HHHHHHTHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHT
T ss_pred             --HHHHHHHHHHHHhcccccHHHHHHHHHhHHHHHHHhh---hhhhhhhhhHHHHHHH-hccchHHHHHHHHHHHHHHHH
Confidence              1122357889999999999999999999999874322   1223335677777777 778889999999999998876


Q ss_pred             CCCCC--hhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCc---------------------hhHH----------
Q 011328          190 KPQPL--FEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTN---------------------DKIQ----------  236 (488)
Q Consensus       190 ~~~~~--~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~---------------------~~~~----------  236 (488)
                      .....  ......+++.+...+.+.++.++..+..++..++..-.                     +...          
T Consensus       312 l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~v~~~~~~~l~~~~  391 (588)
T d1b3ua_         312 LSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVN  391 (588)
T ss_dssp             SCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHH
T ss_pred             HhhhhhhhhhHHHHHHHHHHhhcCCChHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHH
Confidence            42222  22335666777777777777776666655554432100                     0000          


Q ss_pred             -----HHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHH
Q 011328          237 -----AVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISN  311 (488)
Q Consensus       237 -----~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~n  311 (488)
                           .-....+++.+...+.+.++.+|..++.+++.++....   ...+...+.+.+..++.++ ...+|..|+.+++.
T Consensus       392 ~~~~~~~~~~~ll~~l~~~~~d~~~~~r~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~D~-~~~VR~~A~~~L~~  467 (588)
T d1b3ua_         392 EVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLG---VEFFDEKLNSLCMAWLVDH-VYAIREAATSNLKK  467 (588)
T ss_dssp             HHSCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHC---GGGCCHHHHHHHHHGGGCS-SHHHHHHHHHHHHH
T ss_pred             hhcchhhhhhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcC---hHhHHHHHHHHHHhhccCC-chhHHHHHHHHHHH
Confidence                 00111344556666666777777777777777664211   1112234566777788887 88999999999999


Q ss_pred             HhcC-CHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHH
Q 011328          312 ITAG-NVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVC  390 (488)
Q Consensus       312 l~~~-~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a  390 (488)
                      ++.. .++.    ....+++.+.+++.++++.+|..++.++..+......+    ......++.|.++++++.+.+|..+
T Consensus       468 l~~~~~~~~----~~~~i~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~----~~~~~ilp~ll~~~~D~v~nVR~~a  539 (588)
T d1b3ua_         468 LVEKFGKEW----AHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQD----ITTKHMLPTVLRMAGDPVANVRFNV  539 (588)
T ss_dssp             HHHHHCHHH----HHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHH----HHHHHTHHHHHHGGGCSCHHHHHHH
T ss_pred             HHHHhCcHH----HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcChH----HHHHHHHHHHHHHcCCCCHHHHHHH
Confidence            9762 2221    22347888999999999999999999999987533222    2334689999999999999999999


Q ss_pred             HHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 011328          391 LEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETY  451 (488)
Q Consensus       391 l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~~~~~v~~~a~~~l~~~  451 (488)
                      +++|..+....+...          +..     ...+.++.++++++.+|+..|...++.+
T Consensus       540 ~~~l~~i~~~~~~~~----------~~~-----~i~~~l~~L~~D~d~dVr~~A~~al~~l  585 (588)
T d1b3ua_         540 AKSLQKIGPILDNST----------LQS-----EVKPILEKLTQDQDVDVKYFAQEALTVL  585 (588)
T ss_dssp             HHHHHHHGGGSCHHH----------HHH-----HHHHHHHHHTTCSSHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCcHh----------HHH-----HHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            999999865543211          122     2357788899999999999999998865

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=1.6e-15  Score=152.13  Aligned_cols=338  Identities=13%  Similarity=0.153  Sum_probs=248.7

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcC--CCchhh
Q 011328           32 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIAS--GTSENT  109 (488)
Q Consensus        32 i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~--~~~~~~  109 (488)
                      +..|++.|+++|+.+|..|++.|..++..-..+.    ....++|.|.+++++++  +++..++..|+++..  +.++..
T Consensus        12 i~~l~~~l~~~~~~~R~~a~~~l~~ia~~lg~~~----~~~~lip~l~~~~~~~~--ev~~~~~~~l~~~~~~~~~~~~~   85 (588)
T d1b3ua_          12 IAVLIDELRNEDVQLRLNSIKKLSTIALALGVER----TRSELLPFLTDTIYDED--EVLLALAEQLGTFTTLVGGPEYV   85 (588)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHTHHHHHHHSCHHH----HHHTHHHHHHHTCCCCH--HHHHHHHHHHTTCSGGGTSGGGG
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCcHh----hHHHHHHHHHHHhcCcH--HHHHHHHHHHHHHHHHcCChhHH
Confidence            5668999999999999999999999866432211    23467899999987654  788888888887764  123332


Q ss_pred             HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcC
Q 011328          110 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRG  189 (488)
Q Consensus       110 ~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~  189 (488)
                           ..+++.+..++.++++.+|..|+.++..++...+.  .. ... .+.+++..+..+.....+..++..+..+...
T Consensus        86 -----~~ll~~l~~l~~~~~~~Vr~~a~~~l~~i~~~~~~--~~-~~~-~l~p~i~~L~~~~~~~~r~~a~~ll~~~~~~  156 (588)
T d1b3ua_          86 -----HCLLPPLESLATVEETVVRDKAVESLRAISHEHSP--SD-LEA-HFVPLVKRLAGGDWFTSRTSACGLFSVCYPR  156 (588)
T ss_dssp             -----GGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCH--HH-HHH-THHHHHHHHHTCSSHHHHHHHGGGHHHHTTT
T ss_pred             -----HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhCCH--HH-HHH-HHHHHHHHHhcccchHHHHHHHHHHHHHHHH
Confidence                 24578888888889999999999999999876543  12 222 3445555554666667788888877777654


Q ss_pred             CCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHh
Q 011328          190 KPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNI  269 (488)
Q Consensus       190 ~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l  269 (488)
                      .   .......+++.+.+++.+.++.+|..++.+++.++..-..   ......+++.+..+++++++.+|..++.++..+
T Consensus       157 ~---~~~~~~~l~~~~~~l~~D~~~~VR~~a~~~l~~~~~~~~~---~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~i  230 (588)
T d1b3ua_         157 V---SSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLEL---DNVKSEIIPMFSNLASDEQDSVRLLAVEACVNI  230 (588)
T ss_dssp             S---CHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCH---HHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHH
T ss_pred             h---hHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcH---HHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHh
Confidence            2   2234456788888999999999999999999999876442   233457788899999999999999999999998


Q ss_pred             hcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcC-CHHHHHHHHHcCChHHHHHHHhcCChhHHHHHH
Q 011328          270 VTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG-NVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAA  348 (488)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~  348 (488)
                      +...+..   -....+++.+..+++++ ++.+|..++.++++++.. .++    .....+++.+..++.+.+.++|..++
T Consensus       231 ~~~~~~~---~~~~~i~~~l~~~~~D~-~~~Vr~~~~~~l~~l~~~~~~~----~~~~~l~~~l~~ll~d~~~~vr~~a~  302 (588)
T d1b3ua_         231 AQLLPQE---DLEALVMPTLRQAAEDK-SWRVRYMVADKFTELQKAVGPE----ITKTDLVPAFQNLMKDCEAEVRAAAS  302 (588)
T ss_dssp             HHHSCHH---HHHHHTHHHHHHHHTCS-SHHHHHHHHHTHHHHHHHHCHH----HHHHTHHHHHHHHHTCSSHHHHHHHH
T ss_pred             hccCCHH---HHHHHHHHHHHHhcccc-cHHHHHHHHHhHHHHHHHhhhh----hhhhhhhHHHHHHHhccchHHHHHHH
Confidence            8644322   12234678888888888 899999999999998762 222    23346789999999999999999999


Q ss_pred             HHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHH
Q 011328          349 WAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENIL  398 (488)
Q Consensus       349 ~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~  398 (488)
                      .++..++............-..+++.+...+++.++.++..+..++..+.
T Consensus       303 ~~l~~~~~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~~~~~l~~~~  352 (588)
T d1b3ua_         303 HKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLS  352 (588)
T ss_dssp             HHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGH
T ss_pred             HHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhcCCChHHHHHHHHHHhhhh
Confidence            99999876543222222223357788888888888888877766665543

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=4.3e-13  Score=140.82  Aligned_cols=396  Identities=14%  Similarity=0.179  Sum_probs=238.5

Q ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCc-hhh
Q 011328           31 SLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTS-ENT  109 (488)
Q Consensus        31 ~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~-~~~  109 (488)
                      .++.+.+.+.++++..|..|+.+|..++.+. .+.....+ ..+++.++..+++++ +.+|..|+++++.++.... ...
T Consensus       396 ~l~~l~~~l~s~~~~~reaa~~alg~i~eg~-~~~~~~~l-~~li~~l~~~l~d~~-~~Vr~~a~~~l~~~~~~~~~~~~  472 (888)
T d1qbkb_         396 ILPLLKELLFHHEWVVKESGILVLGAIAEGC-MQGMIPYL-PELIPHLIQCLSDKK-ALVRSITCWTLSRYAHWVVSQPP  472 (888)
T ss_dssp             HHHHHHHTTTSSSHHHHHHHHHHHHHHTTTS-HHHHTTTH-HHHHHHHHHHTTSSC-HHHHHHHHHHHHHTHHHHHSSCH
T ss_pred             HHHHHHHhhccchhHHHHHHHHHhhhhhhhH-HHHhcccc-hhhhHHHHHhccCCC-HHHHHHHHHHHHHHHHHhhhhhh
Confidence            4556667778899999999999999987543 11111111 246788889999988 9999999999999875221 112


Q ss_pred             HHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCc-hhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhc
Q 011328          110 RVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSP-KCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR  188 (488)
Q Consensus       110 ~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~  188 (488)
                      ... -..+++.++..+.++++.++..|+++|.+++.... .....+  ...++.++..+ ...+...+..+..++..++.
T Consensus       473 ~~~-~~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~~~l~p~~--~~il~~l~~~l-~~~~~~~~~~~~~al~~l~~  548 (888)
T d1qbkb_         473 DTY-LKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYL--AYILDTLVFAF-SKYQHKNLLILYDAIGTLAD  548 (888)
T ss_dssp             HHH-TTTHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTTSSGGGH--HHHHHHHHHHT-TTCCHHHHHHHHHHHHHHHH
T ss_pred             hhh-hhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhhhHH--HHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHH
Confidence            222 34678889999999999999999999999974211 111111  11344455555 22233333333334433332


Q ss_pred             CC--CCCChhhhhchHHHHHHhhc--------------------------------------------------------
Q 011328          189 GK--PQPLFEQTRPALPALERLIH--------------------------------------------------------  210 (488)
Q Consensus       189 ~~--~~~~~~~~~~~~~~l~~ll~--------------------------------------------------------  210 (488)
                      ..  ..........+++.+.....                                                        
T Consensus       549 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~le~l~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~  628 (888)
T d1qbkb_         549 SVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQP  628 (888)
T ss_dssp             HHGGGGCSHHHHHHHHHHHHHHHTTSCTTCTTHHHHHHHHHHHHHHSTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred             hhhccccchHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            10  00000111111111111111                                                        


Q ss_pred             ----cCChhHHHHHHHHHHHhccCCchhHHHHH-HhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCC
Q 011328          211 ----SNDDEVLTDACWALSYLSDGTNDKIQAVI-EAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQA  285 (488)
Q Consensus       211 ----~~~~~v~~~al~~L~~l~~~~~~~~~~~~-~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~  285 (488)
                          ..+..+...++.++..+...-......++ ...+++.+...+.+.++.++..|+.+++.++..........++ .+
T Consensus       629 ~~~~~~~~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~llgdl~~~~~~~~~~~l~-~~  707 (888)
T d1qbkb_         629 DQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIA-DF  707 (888)
T ss_dssp             TTSCCCCTHHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHH-HH
T ss_pred             ccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHhCCCChHHHHHHHHHHHHHHHhhhHHHHHHHH-HH
Confidence                11233344444444444432222222222 2356777888888899999999999999998766555444433 47


Q ss_pred             hHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC--ChhHHHHHHHHHHHhccCCCHHHH
Q 011328          286 LPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA--EFEIKKEAAWAISNATSGGSNEQI  363 (488)
Q Consensus       286 ~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~~~~~~  363 (488)
                      ++.+...++++ ...++..|+|+++.++....+.....+. .+++.|+.+++++  +..++++++.+|+.++... ++..
T Consensus       708 ~~~l~~~L~~~-~~~v~~~a~~~ig~ia~~~~~~~~py~~-~il~~L~~il~~~~~~~~v~~n~~~~lgrl~~~~-p~~~  784 (888)
T d1qbkb_         708 MPILGTNLNPE-FISVCNNATWAIGEISIQMGIEMQPYIP-MVLHQLVEIINRPNTPKTLLENTAITIGRLGYVC-PQEV  784 (888)
T ss_dssp             HHHHHHTCCGG-GHHHHHHHHHHHHHHHHHTGGGGGGGSH-HHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHC-HHHH
T ss_pred             HHHHHHHhCcC-CHHHHHHHHHHHHHHHHHHHHHhhhhHH-HHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHC-HHHH
Confidence            77888888888 8899999999999998743343333333 3788899999876  4458999999999998755 3332


Q ss_pred             HHHHHCCChHHHHhhcCC-CCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHH
Q 011328          364 KFLVSQGCIKPLCDLLNC-PDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYE  442 (488)
Q Consensus       364 ~~l~~~~~i~~L~~ll~~-~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~~~~~v~~  442 (488)
                      .... ..+++.++..+.. .+.+-+..+...+..++...+..-.       +.+.. |     +..+... ..+.++++.
T Consensus       785 ~~~l-~~~~~~~~~~l~~~~d~~ek~~~~~g~~~~i~~~p~~~~-------~~l~~-~-----~~~i~~~-~~~~~~~~~  849 (888)
T d1qbkb_         785 APML-QQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPSGVI-------QDFIF-F-----CDAVASW-INPKDDLRD  849 (888)
T ss_dssp             GGGG-GGTHHHHHHHHTTSCCSHHHHHHHHHHHHHHHHCGGGTG-------GGHHH-H-----HHHHTTC-SSCCHHHHH
T ss_pred             HhhH-HHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHCcHHHH-------HHHHH-H-----HHHHHhc-CCCCHHHHH
Confidence            2112 2366666766654 4455577889999998877653311       00111 1     1122222 235678888


Q ss_pred             HHHHHHHHhc
Q 011328          443 KAVKILETYW  452 (488)
Q Consensus       443 ~a~~~l~~~~  452 (488)
                      ...++|..|-
T Consensus       850 ~~~~~l~~~~  859 (888)
T d1qbkb_         850 MFCKILHGFK  859 (888)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            8888876654

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=2.4e-12  Score=139.56  Aligned_cols=408  Identities=12%  Similarity=0.104  Sum_probs=267.5

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHH
Q 011328           32 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRV  111 (488)
Q Consensus        32 i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~  111 (488)
                      +..|++.+.+.|+++|+.|+..|.+.+.......-.. ....+++.++++|++++ ++||..|+.+|+.++...++... 
T Consensus         5 ~~~ll~k~~~~D~d~R~ma~~dl~~~l~~~~~~~~~~-~~~~i~~~ll~~L~D~~-~~Vq~~A~k~l~~l~~~~~~~~~-   81 (1207)
T d1u6gc_           5 ISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDD-SERKVVKMILKLLEDKN-GEVQNLAVKCLGPLVSKVKEYQV-   81 (1207)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTT-HHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHHTTSCHHHH-
T ss_pred             HHHHHHhcCCCCHhHHHHHHHHHHHHHhhcccccChH-HHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHhCcHhhH-
Confidence            5678899999999999999999999876542211111 12347889999999998 99999999999999875443321 


Q ss_pred             HHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCch------hHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHH
Q 011328          112 VIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK------CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSN  185 (488)
Q Consensus       112 ~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~------~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~  185 (488)
                         ..+++.|+..+.+++...+..+..+|..+...-+.      ....+ ....++.+...+.+..+..++..++.++..
T Consensus        82 ---~~l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~-~~~l~~~l~~~~~~~~~~~v~~~al~~l~~  157 (1207)
T d1u6gc_          82 ---ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANV-CKKITGRLTSAIAKQEDVSVQLEALDIMAD  157 (1207)
T ss_dssp             ---HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHH-HHHHHHHHHHHHSCCSCHHHHHHHHHHHHH
T ss_pred             ---HHHHHHHHHHhcCCchhhhHHHHHHHHHHHHhcccccccchhHHHH-HHHHHHHHHHhhcCCCCHHHHHHHHHHHHH
Confidence               13578888888888888898888888776532111      11111 112344445555456677889999999998


Q ss_pred             hhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhc-CCCCcchHhHHHH
Q 011328          186 FCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL-RHPSPSVLIPALR  264 (488)
Q Consensus       186 l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL-~~~~~~v~~~a~~  264 (488)
                      +....+..-......+++.++..+.+++..++..|+.+++.++...++.   .. ..+++.++..+ .+.+...+..++.
T Consensus       158 l~~~~g~~l~~~~~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~~---~~-~~~~~~ll~~l~~~~~~~~~~~~~~  233 (1207)
T d1u6gc_         158 MLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI---VF-VDLIEHLLSELSKNDSMSTTRTYIQ  233 (1207)
T ss_dssp             HHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-------C-TTHHHHHHHHHHHTCSSCSCTTHHH
T ss_pred             HHHHhhHhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHCCHH---HH-HHHHHHHHHHHccCCCHHHHHHHHH
Confidence            8776544444455678888889999999999999999999998654321   11 14455566555 3456677888899


Q ss_pred             HHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCH----HHHHHHHHc--------------
Q 011328          265 TVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNV----NQIQAIIEA--------------  326 (488)
Q Consensus       265 ~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~----~~~~~l~~~--------------  326 (488)
                      +++.++...+......+ ..+++.+...+.+. +.++|..++.++..++...+    .....++..              
T Consensus       234 ~l~~l~~~~~~~~~~~l-~~i~~~l~~~l~~~-~~~~r~~al~~l~~l~~~~~~~~~~~~~~ii~~~l~~l~~dp~~~~~  311 (1207)
T d1u6gc_         234 CIAAISRQAGHRIGEYL-EKIIPLVVKFCNVD-DDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYD  311 (1207)
T ss_dssp             HHHHHHHHSSGGGTTSC-TTHHHHHHHHHSSC-CTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC------
T ss_pred             HHHHHHHHcchhhHHHH-HHHHHHHHHHhcCc-cHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHHHHHHHhcCcchhhh
Confidence            99999876554332222 36788999999988 88999999999988876322    112211110              


Q ss_pred             ------------------CChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHH
Q 011328          327 ------------------GIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVT  388 (488)
Q Consensus       327 ------------------~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~  388 (488)
                                        ...+.......+..+.+|..++.+|..++.... +....+. ..+++.|...+.+.++.++.
T Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~s~~vR~~a~~~L~~l~~~~~-~~l~~~~-~~~~~~L~~~l~d~~~~vr~  389 (1207)
T d1u6gc_         312 DEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRH-EMLPEFY-KTVSPALISRFKEREENVKA  389 (1207)
T ss_dssp             ------------------------------CTTHHHHHHHHHHHHHHTTCC-TTHHHHH-TTTHHHHHSTTSCSSSHHHH
T ss_pred             hHHHHHhhhhhhccchhhhhHHHHHhhhhhhhHHHHHHHHHHHHhHHHHHH-HHHHHHH-HHHHHHHHHHhcCCchHHHH
Confidence                              001111111223356899999999999987543 3233322 36889999999999999999


Q ss_pred             HHHHHHHHHHHhhhhhhccCC----CCccchHHHHHHh--hccHHHHHHhhcCCCHHHHHHHHHHHHHhcCC
Q 011328          389 VCLEGLENILKAGEAEKNMGN----TGGVNLFAQAIDD--AEGLEKIENLQSHDNTEIYEKAVKILETYWVE  454 (488)
Q Consensus       389 ~al~~L~~l~~~~~~~~~~~~----~~~~~~~~~~l~~--~g~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~  454 (488)
                      .+..++..++...........    ....+.....+..  ...++.+.+...+.+..++..+..++..+...
T Consensus       390 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~l~~~~~~~r~~~~~~l~~l~~~  461 (1207)
T d1u6gc_         390 DVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNV  461 (1207)
T ss_dssp             HHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccchhhhhhchHHHHhhcchHHHHHHHhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHH
Confidence            999999888754322110000    0000001111211  13466677778888999999998888877654

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=7.7e-12  Score=131.07  Aligned_cols=381  Identities=14%  Similarity=0.125  Sum_probs=234.8

Q ss_pred             HHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHh
Q 011328           45 NIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRL  124 (488)
Q Consensus        45 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~  124 (488)
                      .++..+..+|..++...+.+...     -+++.+.+.+.+++ ...|+.|+.+++.++.+..+.....+. .+++.++..
T Consensus       372 ~~r~~a~~~L~~l~~~~~~~il~-----~~l~~l~~~l~s~~-~~~reaa~~alg~i~eg~~~~~~~~l~-~li~~l~~~  444 (888)
T d1qbkb_         372 NLRKCSAAALDVLANVYRDELLP-----HILPLLKELLFHHE-WVVKESGILVLGAIAEGCMQGMIPYLP-ELIPHLIQC  444 (888)
T ss_dssp             SSHHHHHHHSTTTTTTCCSSSHH-----HHHHHHHHTTTSSS-HHHHHHHHHHHHHHTTTSHHHHTTTHH-HHHHHHHHH
T ss_pred             hHHHHHHHHHhhHhhhhHHHHHH-----HHHHHHHHhhccch-hHHHHHHHHHhhhhhhhHHHHhcccch-hhhHHHHHh
Confidence            45667777776665443222222     24566667788888 799999999999999855443322222 457888899


Q ss_pred             hCCCCHHHHHHHHHHHhhhhCCCch-hHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHH
Q 011328          125 LSSPTDDVREQAVWALGNVAGDSPK-CRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALP  203 (488)
Q Consensus       125 L~~~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~  203 (488)
                      ++++++.+|..++|+|+.++..... .... .-...++.++..+ .+.++.++..|+++|.+++......-......+++
T Consensus       445 l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~-~~~~~l~~ll~~l-~d~~~~V~~~a~~al~~l~~~~~~~l~p~~~~il~  522 (888)
T d1qbkb_         445 LSDKKALVRSITCWTLSRYAHWVVSQPPDT-YLKPLMTELLKRI-LDSNKRVQEAACSAFATLEEEACTELVPYLAYILD  522 (888)
T ss_dssp             TTSSCHHHHHHHHHHHHHTHHHHHSSCHHH-HTTTHHHHHHHHH-SSSCHHHHHHHHHHHHHHHHHHTTSSGGGHHHHHH
T ss_pred             ccCCCHHHHHHHHHHHHHHHHHhhhhhhhh-hhhhhHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence            9999999999999999998742111 1111 1234567777777 66788999999999999987654444556678888


Q ss_pred             HHHHhhccCChhHHHHHHHHHHHhccCCchhH--HHHHHhCCHHHHHHhcCC--CCcchHhHHHHHHhHhhcCCchhhHH
Q 011328          204 ALERLIHSNDDEVLTDACWALSYLSDGTNDKI--QAVIEAGVCPRLVELLRH--PSPSVLIPALRTVGNIVTGDDMQTQC  279 (488)
Q Consensus       204 ~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~--~~~~~~~~l~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~~~~~  279 (488)
                      .+...+...+......+..++..++.......  ..+.+ .+++.+......  .+.......+.+++.++.........
T Consensus       523 ~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~-~l~~~l~~~~~~~~~~~~~~~~~le~l~~i~~~~~~~~~~  601 (888)
T d1qbkb_         523 TLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQ-MLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLP  601 (888)
T ss_dssp             HHHHHTTTCCHHHHHHHHHHHHHHHHHHGGGGCSHHHHH-HHHHHHHHHHTTSCTTCTTHHHHHHHHHHHHHHSTTTTHH
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHHhhhccccchHHHH-HHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhHHHHhh
Confidence            88888888777777777777776653211110  11221 334445444432  23334455667777665433222111


Q ss_pred             HhhCCChHHHHHHhc----------------ccchhhHHHHHHHHHHHHhcCCHHHHHHHH-HcCChHHHHHHHhcCChh
Q 011328          280 IINHQALPCLLDLLT----------------QNYKKSIKKEACWTISNITAGNVNQIQAII-EAGIIGPLVNLLLNAEFE  342 (488)
Q Consensus       280 ~~~~~~~~~L~~lL~----------------~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~-~~~~l~~L~~ll~~~~~~  342 (488)
                      ... .+++.++.++.                ...+..+...++.++..++..-......++ ...+++.+...+++.+++
T Consensus       602 ~~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~  680 (888)
T d1qbkb_         602 YCE-PVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPE  680 (888)
T ss_dssp             HHH-HHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHHHHTCSSHH
T ss_pred             hHH-HHHHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHhCCCChH
Confidence            111 11122222211                111345556666677776652112222333 456788889999999999


Q ss_pred             HHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHh
Q 011328          343 IKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDD  422 (488)
Q Consensus       343 v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~  422 (488)
                      +|..|..+++.++........+++-  ..++.+...++++...++..++++++.++......-.        +|...+  
T Consensus       681 vr~~a~~llgdl~~~~~~~~~~~l~--~~~~~l~~~L~~~~~~v~~~a~~~ig~ia~~~~~~~~--------py~~~i--  748 (888)
T d1qbkb_         681 VRQSSFALLGDLTKACFQHVKPCIA--DFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQ--------PYIPMV--  748 (888)
T ss_dssp             HHHHHHHHHHHHHHHCGGGTGGGHH--HHHHHHHHTCCGGGHHHHHHHHHHHHHHHHHTGGGGG--------GGSHHH--
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHH--HHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHhh--------hhHHHH--
Confidence            9999999999988655433333332  2677788888888889999999999998765432211        122222  


Q ss_pred             hccHHHHHHhhcCC--CHHHHHHHHHHHHHh
Q 011328          423 AEGLEKIENLQSHD--NTEIYEKAVKILETY  451 (488)
Q Consensus       423 ~g~~~~L~~l~~~~--~~~v~~~a~~~l~~~  451 (488)
                         ++.|..+++++  +..+++.+...+.++
T Consensus       749 ---l~~L~~il~~~~~~~~v~~n~~~~lgrl  776 (888)
T d1qbkb_         749 ---LHQLVEIINRPNTPKTLLENTAITIGRL  776 (888)
T ss_dssp             ---HHHHHHHHTCTTCCHHHHHHHHHHHHHH
T ss_pred             ---HHHHHHHHcCCCccHHHHHHHHHHHHHH
Confidence               45566665443  455766666666544

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=99.33  E-value=8.9e-11  Score=104.67  Aligned_cols=257  Identities=15%  Similarity=0.160  Sum_probs=194.0

Q ss_pred             HcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchh
Q 011328           71 QSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC  150 (488)
Q Consensus        71 ~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~  150 (488)
                      +....+.|+++|++++ +.+|..|+.+|+.+..  +         ..++.|+++++++++.+|..|+.+|+.+...... 
T Consensus        17 ~~~~~~~L~~~L~d~~-~~vR~~A~~~L~~~~~--~---------~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~~-   83 (276)
T d1oyza_          17 KKLNDDELFRLLDDHN-SLKRISSARVLQLRGG--Q---------DAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKC-   83 (276)
T ss_dssp             HTSCHHHHHHHTTCSS-HHHHHHHHHHHHHHCC--H---------HHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTT-
T ss_pred             ccCCHHHHHHHhcCCC-HHHHHHHHHHHHhhCC--H---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhcccccc-
Confidence            3456778999999999 9999999999998854  1         3479999999999999999999999998654332 


Q ss_pred             HHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccC
Q 011328          151 RDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDG  230 (488)
Q Consensus       151 ~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~  230 (488)
                      ...     .+..+...+.+++++.++..++.+|..++...+    ......++.+...+.+.++.++..++.+++.+.. 
T Consensus        84 ~~~-----~~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~----~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~~~~-  153 (276)
T d1oyza_          84 EDN-----VFNILNNMALNDKSACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFDKSTNVRRATAFAISVIND-  153 (276)
T ss_dssp             HHH-----HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC---
T ss_pred             ccc-----hHHHHHHHHhcCCChhHHHHHHHHHHHHccccc----hhhHHHHHHHHHHhcCcchHHHHHHHHHHhhcch-
Confidence            111     234556655578899999999999999886531    2234577788888888899999999888876532 


Q ss_pred             CchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHH
Q 011328          231 TNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTIS  310 (488)
Q Consensus       231 ~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~  310 (488)
                                ...++.+..++...++.++..+..++.........         ..+.+...+.+. +..++..+..+++
T Consensus       154 ----------~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~-~~~~~~~~~~al~  213 (276)
T d1oyza_         154 ----------KATIPLLINLLKDPNGDVRNWAAFAININKYDNSD---------IRDCFVEMLQDK-NEEVRIEAIIGLS  213 (276)
T ss_dssp             -----------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHH---------HHHHHHHHTTCS-CHHHHHHHHHHHH
T ss_pred             ----------HHHHHHHHHhcccccchhhhhHHHHHHhhhccccc---------cchhhhhhhhhh-hhhhhhhhccccc
Confidence                      25567788888888888888888888777654332         344567777777 8889999999988


Q ss_pred             HHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCC-CCHHHHHH
Q 011328          311 NITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNC-PDPRIVTV  389 (488)
Q Consensus       311 nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~-~~~~v~~~  389 (488)
                      .+..  +         ..++.|++.+.+  ++++..++++|+.+..   +         ..++.|..++.. ++.+++..
T Consensus       214 ~~~~--~---------~~~~~L~~~l~d--~~vr~~a~~aL~~ig~---~---------~~~~~L~~~l~~~~d~~vr~~  268 (276)
T d1oyza_         214 YRKD--K---------RVLSVLCDELKK--NTVYDDIIEAAGELGD---K---------TLLPVLDTMLYKFDDNEIITS  268 (276)
T ss_dssp             HTTC--G---------GGHHHHHHHHTS--SSCCHHHHHHHHHHCC---G---------GGHHHHHHHHTTSSCCHHHHH
T ss_pred             hhhh--h---------hhHHHHHHHhCC--hHHHHHHHHHHHHcCC---H---------HHHHHHHHHHccCCCHHHHHH
Confidence            7642  2         367788888875  4688999999999852   2         357777777765 56789999


Q ss_pred             HHHHHH
Q 011328          390 CLEGLE  395 (488)
Q Consensus       390 al~~L~  395 (488)
                      |+++|.
T Consensus       269 A~~~L~  274 (276)
T d1oyza_         269 AIDKLK  274 (276)
T ss_dssp             HHHHHT
T ss_pred             HHHHHc
Confidence            888874

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=99.30  E-value=3.4e-10  Score=100.77  Aligned_cols=254  Identities=16%  Similarity=0.133  Sum_probs=188.4

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhh
Q 011328           30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENT  109 (488)
Q Consensus        30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~  109 (488)
                      ...+.|++.|.++++.+|..|+..|..+..            ...++.|++++++++ +.+|..|+.+|+.+.... ...
T Consensus        19 ~~~~~L~~~L~d~~~~vR~~A~~~L~~~~~------------~~~~~~l~~~l~d~~-~~vr~~a~~aL~~l~~~~-~~~   84 (276)
T d1oyza_          19 LNDDELFRLLDDHNSLKRISSARVLQLRGG------------QDAVRLAIEFCSDKN-YIRRDIGAFILGQIKICK-KCE   84 (276)
T ss_dssp             SCHHHHHHHTTCSSHHHHHHHHHHHHHHCC------------HHHHHHHHHHHTCSS-HHHHHHHHHHHHHSCCCT-TTH
T ss_pred             CCHHHHHHHhcCCCHHHHHHHHHHHHhhCC------------HhHHHHHHHHHcCCC-HHHHHHHHHHHHHhcccc-ccc
Confidence            445679999999999999999999988532            135799999999999 999999999999987622 222


Q ss_pred             HHHHhCCCHHHHHH-hhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhc
Q 011328          110 RVVIDHGAVPIFVR-LLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCR  188 (488)
Q Consensus       110 ~~~~~~g~i~~L~~-~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~  188 (488)
                      ...     ++.+.. +++++++.++..++.+|+.++...+.....     .++.+...+ .+.++.++..++.++..+..
T Consensus        85 ~~~-----~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~~-----~~~~l~~~~-~d~~~~vr~~a~~~l~~~~~  153 (276)
T d1oyza_          85 DNV-----FNILNNMALNDKSACVRATAIESTAQRCKKNPIYSPK-----IVEQSQITA-FDKSTNVRRATAFAISVIND  153 (276)
T ss_dssp             HHH-----HHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHHH-----HHHHHHHHT-TCSCHHHHHHHHHHHHTC--
T ss_pred             cch-----HHHHHHHHhcCCChhHHHHHHHHHHHHccccchhhHH-----HHHHHHHHh-cCcchHHHHHHHHHHhhcch
Confidence            211     233333 567899999999999999997654432222     345566666 67788899888888876543


Q ss_pred             CCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhH
Q 011328          189 GKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGN  268 (488)
Q Consensus       189 ~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~  268 (488)
                                ...++.+..++.+.+..++..+..++.........         ..+.+...+.+.+..++..+..+++.
T Consensus       154 ----------~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~al~~  214 (276)
T d1oyza_         154 ----------KATIPLLINLLKDPNGDVRNWAAFAININKYDNSD---------IRDCFVEMLQDKNEEVRIEAIIGLSY  214 (276)
T ss_dssp             -----------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHH---------HHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             ----------HHHHHHHHHhcccccchhhhhHHHHHHhhhccccc---------cchhhhhhhhhhhhhhhhhhccccch
Confidence                      24567888889888999999888888877655432         33456777888888999999888877


Q ss_pred             hhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC-ChhHHHHH
Q 011328          269 IVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNA-EFEIKKEA  347 (488)
Q Consensus       269 l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~-~~~v~~~a  347 (488)
                      +..           ...++.|++.+.++   .+|..++++|+.+..  +         ..++.|..++... +.+++..|
T Consensus       215 ~~~-----------~~~~~~L~~~l~d~---~vr~~a~~aL~~ig~--~---------~~~~~L~~~l~~~~d~~vr~~A  269 (276)
T d1oyza_         215 RKD-----------KRVLSVLCDELKKN---TVYDDIIEAAGELGD--K---------TLLPVLDTMLYKFDDNEIITSA  269 (276)
T ss_dssp             TTC-----------GGGHHHHHHHHTSS---SCCHHHHHHHHHHCC--G---------GGHHHHHHHHTTSSCCHHHHHH
T ss_pred             hhh-----------hhhHHHHHHHhCCh---HHHHHHHHHHHHcCC--H---------HHHHHHHHHHccCCCHHHHHHH
Confidence            532           23577788888654   588999999998842  2         3788888888775 77899999


Q ss_pred             HHHHH
Q 011328          348 AWAIS  352 (488)
Q Consensus       348 ~~aL~  352 (488)
                      +.+|.
T Consensus       270 ~~~L~  274 (276)
T d1oyza_         270 IDKLK  274 (276)
T ss_dssp             HHHHT
T ss_pred             HHHHc
Confidence            88874

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=9.7e-11  Score=112.27  Aligned_cols=390  Identities=11%  Similarity=0.090  Sum_probs=248.1

Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCC-ChhHHHHHHHHHHHhcCCCchh-hHH
Q 011328           34 AMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDD-FPQLQFEAAWALTNIASGTSEN-TRV  111 (488)
Q Consensus        34 ~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~-~~~v~~~a~~~L~~l~~~~~~~-~~~  111 (488)
                      .+++.+.|+|.+++..|-..|..+...+         ..+++..|...+.+++ ...+|..|+..|.+........ ...
T Consensus         4 ~il~~~~s~d~~~r~~A~~~L~~~~~~~---------~~~~~~~l~~il~~~~~~~~~R~~A~i~lk~~l~~~~~~~~~~   74 (458)
T d1ibrb_           4 TILEKTVSPDRLELEAAQKFLERAAVEN---------LPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQ   74 (458)
T ss_dssp             HHHHHTTCSCHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHH
T ss_pred             HHHHHHhCcCHHHHHHHHHHHHHHHhcC---------chHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccCchhhhH
Confidence            5677778999999999999999976532         0135667777775543 3678989988888877533221 111


Q ss_pred             H----------HhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcc-cccHhHHHHHH
Q 011328          112 V----------IDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE-HAKLSMLRNAT  180 (488)
Q Consensus       112 ~----------~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~~v~~~a~  180 (488)
                      .          ....+.+.+++.+.++++.. ..++.+++.++......   -.-.+.++.++..+.. ..+...+..++
T Consensus        75 ~~~~~~~l~~~~~~~i~~~ll~~~~~~~~~~-~~~~~~~~~i~~~~~~~---~~~~~~~~~l~~~l~~~~~~~~~~~~~l  150 (458)
T d1ibrb_          75 YQQRWLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPV---NQWPELIPQLVANVTNPNSTEHMKESTL  150 (458)
T ss_dssp             HHHHHHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGG---TCCTTHHHHHHHHHHCTTCCHHHHHHHH
T ss_pred             HhhhhccCCHHHHHHHHHHHHhccCCCcHHH-HHHHHHHHHHHHHhCCc---ccCcchhHHHHHHHHhhcchHHHHHHHH
Confidence            1          11234455666666655433 33445555554211000   0011356677776632 34556778888


Q ss_pred             HHHHHhhcCC-CCCChhhhhchHHHHHHhhccC--ChhHHHHHHHHHHHhccCCchhH-HHHHHhCCHHHHHHhcCCCCc
Q 011328          181 WTLSNFCRGK-PQPLFEQTRPALPALERLIHSN--DDEVLTDACWALSYLSDGTNDKI-QAVIEAGVCPRLVELLRHPSP  256 (488)
Q Consensus       181 ~~L~~l~~~~-~~~~~~~~~~~~~~l~~ll~~~--~~~v~~~al~~L~~l~~~~~~~~-~~~~~~~~l~~L~~lL~~~~~  256 (488)
                      .++..++... +.........+++.+...+.++  +..++..++.++..+........ .........+.+...+.++++
T Consensus       151 ~~l~~~~~~~~~~~~~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  230 (458)
T d1ibrb_         151 EAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDT  230 (458)
T ss_dssp             HHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSH
T ss_pred             HHHHHHHhhccchhhhhhHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhHhhHHHHhcCCCH
Confidence            9988887654 2333344567788888888754  57899999999999886543221 112223456778888888999


Q ss_pred             chHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHH--------------
Q 011328          257 SVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQA--------------  322 (488)
Q Consensus       257 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~--------------  322 (488)
                      +++..++.++..++...+......+.......+...+.+. +..++..++..+..++.........              
T Consensus       231 ~~~~~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~  309 (458)
T d1ibrb_         231 RVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSD-IDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHT  309 (458)
T ss_dssp             HHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCS-SHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCC
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHHH
Confidence            9999999999999876655443333334445555666666 7889999998888876421111100              


Q ss_pred             ------HHHcCChHHHHHHHhc-------CChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHH
Q 011328          323 ------IIEAGIIGPLVNLLLN-------AEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTV  389 (488)
Q Consensus       323 ------l~~~~~l~~L~~ll~~-------~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~  389 (488)
                            .....+++.+...+..       .+..++..+..++..++.....+....     +++.+.+.++++++.++..
T Consensus       310 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~-----l~~~i~~~l~s~~~~~r~a  384 (458)
T d1ibrb_         310 SKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPH-----VLPFIKEHIKNPDWRYRDA  384 (458)
T ss_dssp             CCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHHH-----HHHHHHHHTTCSSHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHhhhhcchhhhccccccHHHHHHHHHHHHHHhccHhhhhH-----HHHHHHHHhcCCCHHHHHH
Confidence                  0011234444444432       134688889999988876544333333     4677888899999999999


Q ss_pred             HHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCC
Q 011328          390 CLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVE  454 (488)
Q Consensus       390 al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~  454 (488)
                      ++.+|..+........          +...+  ...++.|..+.+++++.||..|.+.+.++.+.
T Consensus       385 al~~l~~i~~~~~~~~----------~~~~l--~~i~~~l~~~l~d~~~~VR~~a~~~l~~i~~~  437 (458)
T d1ibrb_         385 AVMAFGCILEGPEPSQ----------LKPLV--IQAMPTLIELMKDPSVVVRDTAAWTVGRICEL  437 (458)
T ss_dssp             HHHHHHHTSSSSCTTT----------TCTTT--TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHhH----------HHHHH--HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence            9999988764322111          01111  22467788889999999999999999887643

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=6.2e-11  Score=113.69  Aligned_cols=362  Identities=13%  Similarity=0.080  Sum_probs=226.5

Q ss_pred             ccHHHHHHHhcC--CCHHHHHHHHHHHHHHhccCCCccHHH----------HHHcCCHHHHHHhhcCCCChhHHHHHHHH
Q 011328           30 ESLPAMVAGVWS--DDRNIQLDATTQFRKLLSIERSPPINE----------VIQSGVVPRFIEFLSRDDFPQLQFEAAWA   97 (488)
Q Consensus        30 ~~i~~l~~~L~s--~~~~~~~~a~~~L~~l~~~~~~~~~~~----------~~~~~~i~~L~~lL~~~~~~~v~~~a~~~   97 (488)
                      +.+..+...+.+  .+..+|..|+..|++.+..........          -....+.+.+++.+.+++ +. +..++.+
T Consensus        34 ~~~~~l~~il~~~~~~~~~R~~A~i~lk~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ll~~~~~~~-~~-~~~~~~~  111 (458)
T d1ibrb_          34 TFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTET-YR-PSSASQC  111 (458)
T ss_dssp             HHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCC-SS-SCSHHHH
T ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccCchhhhHHhhhhccCCHHHHHHHHHHHHhccCCCc-HH-HHHHHHH
Confidence            345566666654  357899999999999886542111111          112345556777777765 33 3345556


Q ss_pred             HHHhcCCCchhhHHHHhCCCHHHHHHhhCC--CCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcc-cccHh
Q 011328           98 LTNIASGTSENTRVVIDHGAVPIFVRLLSS--PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE-HAKLS  174 (488)
Q Consensus        98 L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~~  174 (488)
                      +..++.... ..  -.-.+.++.+...+.+  .+...+..++.++..++.........-.....++.++..+.. +.+..
T Consensus       112 ~~~i~~~~~-~~--~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~il~~~~~~l~~~~~~~~  188 (458)
T d1ibrb_         112 VAGIACAEI-PV--NQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNN  188 (458)
T ss_dssp             HHHHHHHHG-GG--TCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHH
T ss_pred             HHHHHHHhC-Cc--ccCcchhHHHHHHHHhhcchHHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHhcccccCHH
Confidence            666554110 00  0012567888887765  567888899999988874332211111111245566666643 34577


Q ss_pred             HHHHHHHHHHHhhcCCC--CCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcC
Q 011328          175 MLRNATWTLSNFCRGKP--QPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLR  252 (488)
Q Consensus       175 v~~~a~~~L~~l~~~~~--~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~  252 (488)
                      ++..++.++..+.....  ...........+.+...+.+++++++..++.++..++...+......+.......+...+.
T Consensus       189 v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~~~~  268 (458)
T d1ibrb_         189 VKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMK  268 (458)
T ss_dssp             HHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhhhhhhHHHHHHhHhhHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999998886541  2223334556777888888899999999999999998655443332222233344556667


Q ss_pred             CCCcchHhHHHHHHhHhhcCCchhhHH--------------------HhhCCChHHHHHHhcc------cchhhHHHHHH
Q 011328          253 HPSPSVLIPALRTVGNIVTGDDMQTQC--------------------IINHQALPCLLDLLTQ------NYKKSIKKEAC  306 (488)
Q Consensus       253 ~~~~~v~~~a~~~L~~l~~~~~~~~~~--------------------~~~~~~~~~L~~lL~~------~~~~~v~~~a~  306 (488)
                      +.++.++..++..+..++.........                    .....+.+.+...+.+      ..+..++..+.
T Consensus       269 ~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~  348 (458)
T d1ibrb_         269 SDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAG  348 (458)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHHHHHHHHHHHHHHHhhhHHhhhhcchhhhccccccHHHHHH
Confidence            778889999998888876422111000                    0011223344444422      11345888888


Q ss_pred             HHHHHHhcC-CHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHH
Q 011328          307 WTISNITAG-NVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPR  385 (488)
Q Consensus       307 ~~L~nl~~~-~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~  385 (488)
                      .++..++.. ..+...     .+++.+...+.++++.+|..|+.+|+.++.....+...... ..+++.+...++++++.
T Consensus       349 ~~l~~l~~~~~~~~~~-----~l~~~i~~~l~s~~~~~r~aal~~l~~i~~~~~~~~~~~~l-~~i~~~l~~~l~d~~~~  422 (458)
T d1ibrb_         349 VCLMLLATCCEDDIVP-----HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDPSVV  422 (458)
T ss_dssp             HHHHHHHHHTTTTHHH-----HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTT-TTHHHHHHHGGGCSCHH
T ss_pred             HHHHHHHHhccHhhhh-----HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCHhHHHHHH-HHHHHHHHHHhCCCCHH
Confidence            888888762 222222     25667778888889999999999999998754332221111 25688899999999999


Q ss_pred             HHHHHHHHHHHHHHhhh
Q 011328          386 IVTVCLEGLENILKAGE  402 (488)
Q Consensus       386 v~~~al~~L~~l~~~~~  402 (488)
                      +|..|+++|+++.....
T Consensus       423 VR~~a~~~l~~i~~~~~  439 (458)
T d1ibrb_         423 VRDTAAWTVGRICELLP  439 (458)
T ss_dssp             HHHHHHHHHHHHHHHGG
T ss_pred             HHHHHHHHHHHHHHHhh
Confidence            99999999999987654

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.19  E-value=8.2e-09  Score=106.75  Aligned_cols=389  Identities=12%  Similarity=0.080  Sum_probs=244.7

Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCC-ChhHHHHHHHHHHHhcCCCchhhHHH-
Q 011328           35 MVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDD-FPQLQFEAAWALTNIASGTSENTRVV-  112 (488)
Q Consensus        35 l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~-  112 (488)
                      |...+.|+|+.+|..|-..|.++....         ..+++..|.+.+.+.+ ...+|..|+..|.|...........- 
T Consensus        10 L~~~~~s~d~~~r~~Ae~~L~~~~~~~---------~~~~~~~l~~il~~~~~~~~~r~~A~i~lkn~i~~~~~~~~~~~   80 (861)
T d2bpta1          10 LENSILSPDQNIRLTSETQLKKLSNDN---------FLQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQF   80 (861)
T ss_dssp             HHHHHHCSSHHHHHHHHHHHHHHHHHC---------HHHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHHHH
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHhcC---------chHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhcccchhhhhH
Confidence            334567999999999999998876432         1246677888886543 36788999988888765332211100 


Q ss_pred             -----------HhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCC-chhHHHHHhcCChHHHHHHhcccccHhHHHHHH
Q 011328          113 -----------IDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDS-PKCRDLVLSNGALMPLLAQFNEHAKLSMLRNAT  180 (488)
Q Consensus       113 -----------~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~  180 (488)
                                 ....+-..++..+.++++.+|..++.+++.++... +..+  .  ...++.++..+..+.+..++..++
T Consensus        81 ~~~~~~~i~~~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~i~~~~~p~~~--w--peli~~L~~~~~s~~~~~~~~~al  156 (861)
T d2bpta1          81 AQRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGA--W--PELMKIMVDNTGAEQPENVKRASL  156 (861)
T ss_dssp             HHHHHHHSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTC--C--HHHHHHHHHHTSTTSCHHHHHHHH
T ss_pred             HhhhHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCCcCc--h--HHHHHHHHHHhcCCCcHHHHHHHH
Confidence                       01123456677788889999999999999987421 1100  0  024566777775555667788899


Q ss_pred             HHHHHhhcCCCCCChh---hhhchHHHHHHhhcc--CChhHHHHHHHHHHHhccCCchhHH-HHHHhCCHHHHHHhcCCC
Q 011328          181 WTLSNFCRGKPQPLFE---QTRPALPALERLIHS--NDDEVLTDACWALSYLSDGTNDKIQ-AVIEAGVCPRLVELLRHP  254 (488)
Q Consensus       181 ~~L~~l~~~~~~~~~~---~~~~~~~~l~~ll~~--~~~~v~~~al~~L~~l~~~~~~~~~-~~~~~~~l~~L~~lL~~~  254 (488)
                      .++..++.........   .....+..+...+.+  .+..++..++.++.++...-..... ......+++.+...+.++
T Consensus       157 ~~l~~i~e~~~~~~~~~~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  236 (861)
T d2bpta1         157 LALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAE  236 (861)
T ss_dssp             HHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCS
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhHhHHhhhhhhHHHHhHHHHhcCC
Confidence            9999998765322222   223455555555543  4678999999999988765432211 112224567788888999


Q ss_pred             CcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHH---------
Q 011328          255 SPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIE---------  325 (488)
Q Consensus       255 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~---------  325 (488)
                      +++++..++.++..++...+......+..-+...+....++. ++.++..++..+..++............         
T Consensus       237 ~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~l~~l~~~~~~~~-~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~  315 (861)
T d2bpta1         237 DIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSP-NDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSY  315 (861)
T ss_dssp             CHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCC
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence            999999999999999876554443333322333344455566 8889999988888776531111111110         


Q ss_pred             -------cCChHHHHHHHhcC-------ChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHH
Q 011328          326 -------AGIIGPLVNLLLNA-------EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCL  391 (488)
Q Consensus       326 -------~~~l~~L~~ll~~~-------~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al  391 (488)
                             ..+++.+...+...       +...+..+..++..++.....+....     ..+.+...+.+.++..+..++
T Consensus       316 ~~~~~~l~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~a~  390 (861)
T d2bpta1         316 NFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEP-----VLEFVEQNITADNWRNREAAV  390 (861)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHHH-----HHHHHHHHTTCSSHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHhhcchhhhhh-----hcchhhhhhhhHHHHHHHHHH
Confidence                   12455555555432       33567777777777764332222222     244556677788899999999


Q ss_pred             HHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCC
Q 011328          392 EGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVE  454 (488)
Q Consensus       392 ~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~  454 (488)
                      .++..+........          ....+.  ..++.+.....++++.|+..+.+.+.++.+.
T Consensus       391 ~~l~~i~~~~~~~~----------~~~~l~--~~l~~l~~~l~d~~~~vr~~a~~~l~~l~~~  441 (861)
T d2bpta1         391 MAFGSIMDGPDKVQ----------RTYYVH--QALPSILNLMNDQSLQVKETTAWCIGRIADS  441 (861)
T ss_dssp             HHHHHTSSSSCHHH----------HHHHHH--HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhcchhh----------HHHHHH--HHHHHHHHHhcCcchhhhhHHHHHHHHHHHH
Confidence            88887765432211          122222  2367788888999999999999988776543

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=9.1e-10  Score=118.90  Aligned_cols=356  Identities=12%  Similarity=0.117  Sum_probs=224.6

Q ss_pred             HHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHH
Q 011328           76 PRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVL  155 (488)
Q Consensus        76 ~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~  155 (488)
                      +.+...+....+..++..++.++..+....+..-... ...+++.++..+.++++.+|..|+.+|+.++...+.   .. 
T Consensus       133 ~~l~~~~~~~~~~~v~~~al~~l~~l~~~~g~~l~~~-~~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~---~~-  207 (1207)
T d1u6gc_         133 GRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNF-HPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN---IV-  207 (1207)
T ss_dssp             HHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTT-HHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC--------
T ss_pred             HHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhHhhHHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHCCH---HH-
Confidence            3444444454447889999998888865222111000 113567777788889999999999999999865432   11 


Q ss_pred             hcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhH
Q 011328          156 SNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKI  235 (488)
Q Consensus       156 ~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~  235 (488)
                      -...+..++..+..+.+...+..++.++..+++..+..-......+++.+...+.+.+.+++..++.++..++...+...
T Consensus       208 ~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~  287 (1207)
T d1u6gc_         208 FVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEV  287 (1207)
T ss_dssp             CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCC
T ss_pred             HHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhChhhh
Confidence            12346677777756666667778888888888765444344557889999999999999999999999988876544322


Q ss_pred             HHHHHhCCHHHHHHh-------------------------------------cCCCCcchHhHHHHHHhHhhcCCchhhH
Q 011328          236 QAVIEAGVCPRLVEL-------------------------------------LRHPSPSVLIPALRTVGNIVTGDDMQTQ  278 (488)
Q Consensus       236 ~~~~~~~~l~~L~~l-------------------------------------L~~~~~~v~~~a~~~L~~l~~~~~~~~~  278 (488)
                      ..... .+++.+...                                     ..+..+.+|..++.+|..+....+....
T Consensus       288 ~~~~~-~ii~~~l~~l~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~s~~vR~~a~~~L~~l~~~~~~~l~  366 (1207)
T d1u6gc_         288 YPHVS-TIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLP  366 (1207)
T ss_dssp             HHHHH-HHHHHHTTCCCCC------------------------------------CTTHHHHHHHHHHHHHHTTCCTTHH
T ss_pred             hhhHH-HHHHHHHHHHhcCcchhhhhHHHHHhhhhhhccchhhhhHHHHHhhhhhhhHHHHHHHHHHHHhHHHHHHHHHH
Confidence            21111 111111111                                     1223467899999999999887665544


Q ss_pred             HHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcC--C-HH-------------HHHHHH--HcCChHHHHHHHhcCC
Q 011328          279 CIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG--N-VN-------------QIQAII--EAGIIGPLVNLLLNAE  340 (488)
Q Consensus       279 ~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~--~-~~-------------~~~~l~--~~~~l~~L~~ll~~~~  340 (488)
                      ...+ .+++.++..+.+. ++.+|..+..++..+...  . ..             ....+.  -..+++.+.+.+.+.+
T Consensus       367 ~~~~-~~~~~L~~~l~d~-~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~l~~~~  444 (1207)
T d1u6gc_         367 EFYK-TVSPALISRFKER-EENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKS  444 (1207)
T ss_dssp             HHHT-TTHHHHHSTTSCS-SSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSC
T ss_pred             HHHH-HHHHHHHHHhcCC-chHHHHHHHHHHHHHHHhccchhhhhhchHHHHhhcchHHHHHHHhHHHHHHHHHHhcCCc
Confidence            4433 6889999999888 889999999888877641  0 00             000111  1235667777778888


Q ss_pred             hhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCC--CHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHH
Q 011328          341 FEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCP--DPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQ  418 (488)
Q Consensus       341 ~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~  418 (488)
                      ..++..+..++..++.........++.  ..++.+...+...  ...++..++.++..++.......          +..
T Consensus       445 ~~~r~~~~~~l~~l~~~~~~~l~~~l~--~~~~~i~~~l~~~~~~~~~~~~al~~l~~l~~~~~~~~----------~~~  512 (1207)
T d1u6gc_         445 VKTRQCCFNMLTELVNVLPGALTQHIP--VLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQV----------FHP  512 (1207)
T ss_dssp             HHHHHHHHHHHHHHHHHSTTTTGGGHH--HHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGG----------GHH
T ss_pred             hhHHHHHHHHHHHHHHHcchHHHHhhH--hhHHHHHHHHhcccchhHHHHHHHHHHHHHHHhccHHH----------HHH
Confidence            999999999998887533212222221  1355566666543  34677788888888876433221          222


Q ss_pred             HHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 011328          419 AIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWV  453 (488)
Q Consensus       419 ~l~~~g~~~~L~~l~~~~~~~v~~~a~~~l~~~~~  453 (488)
                      .+  ....+.+.....+++.+++..|...+..+..
T Consensus       513 ~~--~~l~~~~~~~~~~~~~~i~~~al~~~~~l~~  545 (1207)
T d1u6gc_         513 HV--QALVPPVVACVGDPFYKITSEALLVTQQLVK  545 (1207)
T ss_dssp             HH--TTTHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred             HH--HhhhhhHHHHHccccHHHHHHHHHHHHHHHH
Confidence            22  2235556666777788887777766655543

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.14  E-value=9.1e-10  Score=114.12  Aligned_cols=398  Identities=12%  Similarity=0.155  Sum_probs=233.7

Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHH
Q 011328           34 AMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRVVI  113 (488)
Q Consensus        34 ~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~  113 (488)
                      .+...+.+++...+..++.++..+.... ......-.-..+++.+++.+.+++ +.+|..++++++.++...+   ..+.
T Consensus       373 ~~~~~~~~~~~~~~~~a~~~l~~i~~~~-~~~~~~~~l~~~l~~l~~~l~d~~-~~vr~~a~~~l~~l~~~~~---~~~~  447 (861)
T d2bpta1         373 FVEQNITADNWRNREAAVMAFGSIMDGP-DKVQRTYYVHQALPSILNLMNDQS-LQVKETTAWCIGRIADSVA---ESID  447 (861)
T ss_dssp             HHHHHTTCSSHHHHHHHHHHHHHTSSSS-CHHHHHHHHHHHHHHHHHGGGCSC-HHHHHHHHHHHHHHHHHHG---GGSC
T ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHHhhc-chhhHHHHHHHHHHHHHHHhcCcc-hhhhhHHHHHHHHHHHHhc---hhhh
Confidence            3344556788999999999999987654 222222223457889999999998 9999999999999876211   1111


Q ss_pred             hCCCHHHHHHhhC---CCCHHHHHHHHHHHhhhhCC----Cc-hhHHHHHhcCChHHHHHHhc-ccccHhHHHHHHHHHH
Q 011328          114 DHGAVPIFVRLLS---SPTDDVREQAVWALGNVAGD----SP-KCRDLVLSNGALMPLLAQFN-EHAKLSMLRNATWTLS  184 (488)
Q Consensus       114 ~~g~i~~L~~~L~---~~~~~v~~~a~~~L~~l~~~----~~-~~~~~~~~~~~l~~L~~ll~-~~~~~~v~~~a~~~L~  184 (488)
                      ....++.++..+.   ..++.++..+++++..++..    .. .......  ..+..++.... ...+..++..+..++.
T Consensus       448 ~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~al~  525 (861)
T d2bpta1         448 PQQHLPGVVQACLIGLQDHPKVATNCSWTIINLVEQLAEATPSPIYNFYP--ALVDGLIGAANRIDNEFNARASAFSALT  525 (861)
T ss_dssp             TTTTHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHSSSSSCGGGGGHH--HHHHHHHHHHTCSCCGGGHHHHHHHHHH
T ss_pred             hHHhhhhhhHHHHhccccChHHHHHHHHHHHHHHHHhhhcccchhhHHHh--hHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence            2233444444332   35678888888887777521    11 1111111  12334444442 2345678888888888


Q ss_pred             HhhcCCCCCChhhhhchHHHHHHhhc----cCC-----------hhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHH
Q 011328          185 NFCRGKPQPLFEQTRPALPALERLIH----SND-----------DEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVE  249 (488)
Q Consensus       185 ~l~~~~~~~~~~~~~~~~~~l~~ll~----~~~-----------~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~  249 (488)
                      .+....+...........+.+...+.    ...           ..++..++.++..+....+.....+.+ .+++.+..
T Consensus       526 ~~i~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~-~l~~~l~~  604 (861)
T d2bpta1         526 TMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVAD-MLMGLFFR  604 (861)
T ss_dssp             HHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHH-HHHHHHHH
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHHHHHHHhcchhhHHHHHH-HHHHHHhh
Confidence            88766544333333344444433332    111           123444455555544332222221221 45566666


Q ss_pred             hcCC-CCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCC
Q 011328          250 LLRH-PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGI  328 (488)
Q Consensus       250 lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~  328 (488)
                      .+.. .+..++..++.+++.++..........++ .+++.+...+++. +..++..|+.+++.++....+....... .+
T Consensus       605 ~l~~~~~~~v~~~~l~~l~~l~~~~~~~~~~~l~-~i~p~l~~~l~~~-~~~v~~~a~~~l~~i~~~~~~~~~~~~~-~i  681 (861)
T d2bpta1         605 LLEKKDSAFIEDDVFYAISALAASLGKGFEKYLE-TFSPYLLKALNQV-DSPVSITAVGFIADISNSLEEDFRRYSD-AM  681 (861)
T ss_dssp             HHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHH-HHHHHHHHHHHCT-TSHHHHHHHHHHHHHHHHTGGGGHHHHH-HH
T ss_pred             hcccCCchhHHHHHHHHHHHHHHHhhHHHHHHHH-HHhhHHHHHhCCC-CHHHHHHHHHHHHHHHHHhHHHhHhhHH-HH
Confidence            6654 45678889999999988765544444333 5788888999888 8899999999999998744443333333 37


Q ss_pred             hHHHHHHHhcC--ChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCC----C-------HHHHHHHHHHHH
Q 011328          329 IGPLVNLLLNA--EFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCP----D-------PRIVTVCLEGLE  395 (488)
Q Consensus       329 l~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~----~-------~~v~~~al~~L~  395 (488)
                      ++.|++.+.++  +..+|..++.+++.++........+++-+  +++.+.+.+...    +       ..+++.++.++.
T Consensus       682 ~~~L~~~l~~~~~~~~~k~~~~~~l~~i~~~~~~~~~~~l~~--~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  759 (861)
T d2bpta1         682 MNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLND--IMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYV  759 (861)
T ss_dssp             HHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHHH--HHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhCcCCCcccHHHHHHHHHHHHHHHHHHH
Confidence            88888888875  56899999999999986443344444332  455555555432    1       235677777777


Q ss_pred             HHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhc----CCCHHHHHHHHHHHHHhcCC
Q 011328          396 NILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQS----HDNTEIYEKAVKILETYWVE  454 (488)
Q Consensus       396 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~----~~~~~v~~~a~~~l~~~~~~  454 (488)
                      .++........     ...++...+     ++.+..+..    +.+.++...+..++..+...
T Consensus       760 ~i~~~~~~~~~-----~~~p~~~~i-----~~~i~~~~~~~~~~~~~~~~~~~~~~i~~l~~~  812 (861)
T d2bpta1         760 GIVAGLHDKPE-----ALFPYVGTI-----FQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAM  812 (861)
T ss_dssp             HHHHHTTTCHH-----HHGGGHHHH-----HHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCHH-----HHHHHHHHH-----HHHHHHHHhCCccCCCHHHHHHHHHHHHHHHHH
Confidence            76543221110     001122222     233333332    34677888888887666544

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=2.1e-08  Score=103.89  Aligned_cols=402  Identities=13%  Similarity=0.071  Sum_probs=248.1

Q ss_pred             ccHHHHHHHhcC--CCHHHHHHHHHHHHHHhccCCCccHH----------HHHHcCCHHHHHHhhcCCCChhHHHHHHHH
Q 011328           30 ESLPAMVAGVWS--DDRNIQLDATTQFRKLLSIERSPPIN----------EVIQSGVVPRFIEFLSRDDFPQLQFEAAWA   97 (488)
Q Consensus        30 ~~i~~l~~~L~s--~~~~~~~~a~~~L~~l~~~~~~~~~~----------~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~   97 (488)
                      +-+..|.+.+.+  .+..+|..|+..|.+.+.........          .-....+...+++.+.+++  .++..++.+
T Consensus        35 ~f~~~L~~i~~~~~~~~~iR~~A~i~lKn~i~~~~~~~~~~~~~~~~~i~~~~k~~ik~~ll~~l~~~~--~~~~~~a~~  112 (876)
T d1qgra_          35 TFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLHTLGTET--YRPSSASQC  112 (876)
T ss_dssp             HHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTTCC--SSSCHHHHH
T ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccchhhhhhcccccCCHHHHHHHHHHHHHHhcCCc--HHHHHHHHH
Confidence            345556666654  35789999999999987643111110          1112335567778887766  345567888


Q ss_pred             HHHhcCCC-chhhHHHHhCCCHHHHHHhhCC--CCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcc-cccH
Q 011328           98 LTNIASGT-SENTRVVIDHGAVPIFVRLLSS--PTDDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE-HAKL  173 (488)
Q Consensus        98 L~~l~~~~-~~~~~~~~~~g~i~~L~~~L~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~  173 (488)
                      ++.++... |...    =.++++.|.+.+.+  .+..++..++.+|..++..-......-.....++.++..+.. +.+.
T Consensus       113 i~~i~~~~~p~~~----Wpeli~~L~~~l~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~il~~i~~~l~~~~~~~  188 (876)
T d1qgra_         113 VAGIACAEIPVNQ----WPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSN  188 (876)
T ss_dssp             HHHHHHHHGGGTC----CTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCH
T ss_pred             HHHHHHHHCCccc----cHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcCcCccH
Confidence            88887521 1000    02578889888865  447889999999999975322110000111245566666643 3456


Q ss_pred             hHHHHHHHHHHHhhcCCC--CCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhc
Q 011328          174 SMLRNATWTLSNFCRGKP--QPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL  251 (488)
Q Consensus       174 ~v~~~a~~~L~~l~~~~~--~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL  251 (488)
                      .++..++.++.+......  .........+++.+...+.+++++++..++.++..+....++.....+...+...+...+
T Consensus       189 ~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~  268 (876)
T d1qgra_         189 NVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAM  268 (876)
T ss_dssp             HHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh
Confidence            788889888887765431  112222344667777778889999999999999999876665555555555666677777


Q ss_pred             CCCCcchHhHHHHHHhHhhcCCchhhH--------------------HHhhCCChHHHHHHhccc------chhhHHHHH
Q 011328          252 RHPSPSVLIPALRTVGNIVTGDDMQTQ--------------------CIINHQALPCLLDLLTQN------YKKSIKKEA  305 (488)
Q Consensus       252 ~~~~~~v~~~a~~~L~~l~~~~~~~~~--------------------~~~~~~~~~~L~~lL~~~------~~~~v~~~a  305 (488)
                      .+..+.++..++..+..++........                    ......+++.+...+...      .+..++..|
T Consensus       269 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a  348 (876)
T d1qgra_         269 KSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAA  348 (876)
T ss_dssp             TCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHH
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHHhcccccccccchHHHHH
Confidence            888888888888887777642211100                    000112233444443221      133577778


Q ss_pred             HHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHH
Q 011328          306 CWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPR  385 (488)
Q Consensus       306 ~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~  385 (488)
                      ..++..++....+.   ++. .+++.+...+.++++..+..++.+++.++............. ..++.+...+.++++.
T Consensus       349 ~~~l~~l~~~~~~~---~~~-~~~~~i~~~l~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~l~~~l~d~~~~  423 (876)
T d1qgra_         349 GVCLMLLATCCEDD---IVP-HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVI-QAMPTLIELMKDPSVV  423 (876)
T ss_dssp             HHHHHHHHHHHGGG---GHH-HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHH-HHHHHHHHHHTCSSHH
T ss_pred             HHHHHHHHHHhhhh---hhh-hhHHHHHHhhccchHHHHHHHHHHHHhhhhhhhHHHHHHHHH-HHHHHHHHhhcCCccH
Confidence            88877776521111   111 134556666677889999999999999987765554443322 4788889999999999


Q ss_pred             HHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCC
Q 011328          386 IVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVE  454 (488)
Q Consensus       386 v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~  454 (488)
                      ++..+++++..+++.........      .+...     .++.+.... ++++.++..+...+..+.+.
T Consensus       424 vr~~a~~~l~~~~~~~~~~~~~~------~~~~~-----~~~~l~~~l-~~~~~v~~~~~~~l~~l~~~  480 (876)
T d1qgra_         424 VRDTAAWTVGRICELLPEAAIND------VYLAP-----LLQCLIEGL-SAEPRVASNVCWAFSSLAEA  480 (876)
T ss_dssp             HHHHHHHHHHHHHHHCGGGTSST------TTHHH-----HHHHHHHHT-TSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcchhhhhH------HHhhh-----HHHHHHHHh-cCCHHHHHHHHHHHHHHHHH
Confidence            99999999999987654322100      01111     133344444 34688888888888776543

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=3.4e-08  Score=102.37  Aligned_cols=315  Identities=14%  Similarity=0.147  Sum_probs=192.4

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHH
Q 011328           32 LPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRV  111 (488)
Q Consensus        32 i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~  111 (488)
                      ++.+.+.+.+++...+..++..+..+........... ....+++.+...+.+++ +.++..++++++.++...+..   
T Consensus       368 ~~~i~~~l~~~~~~~r~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~l~~~l~d~~-~~vr~~a~~~l~~~~~~~~~~---  442 (876)
T d1qgra_         368 LPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKP-LVIQAMPTLIELMKDPS-VVVRDTAAWTVGRICELLPEA---  442 (876)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHH-HHHHHHHHHHHHHTCSS-HHHHHHHHHHHHHHHHHCGGG---
T ss_pred             HHHHHHhhccchHHHHHHHHHHHHhhhhhhhHHHHHH-HHHHHHHHHHHhhcCCc-cHHHHHHHHHHHHHHHHcchh---
Confidence            4445566678889999888888888765442222222 23457888999999998 999999999999998633221   


Q ss_pred             HHhCC----CHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCch---------------hHHHHHhcCChHHHHHHhcc--c
Q 011328          112 VIDHG----AVPIFVRLLSSPTDDVREQAVWALGNVAGDSPK---------------CRDLVLSNGALMPLLAQFNE--H  170 (488)
Q Consensus       112 ~~~~g----~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~---------------~~~~~~~~~~l~~L~~ll~~--~  170 (488)
                      .....    .++.+...+. +++.++..+++++.+++.....               .....  ...+..++..+..  .
T Consensus       443 ~~~~~~~~~~~~~l~~~l~-~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~--~~i~~~l~~~~~~~~~  519 (876)
T d1qgra_         443 AINDVYLAPLLQCLIEGLS-AEPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSF--ELIVQKLLETTDRPDG  519 (876)
T ss_dssp             TSSTTTHHHHHHHHHHHTT-SCHHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTH--HHHHHHHHHHTTSCSS
T ss_pred             hhhHHHhhhHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH--HHHHHHHHHHHHhhcc
Confidence            11122    2444444443 4788999999999988632100               00000  0123344555532  2


Q ss_pred             ccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhc----cC------C-----hhHHHHHHHHHHHhccCCchhH
Q 011328          171 AKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH----SN------D-----DEVLTDACWALSYLSDGTNDKI  235 (488)
Q Consensus       171 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~----~~------~-----~~v~~~al~~L~~l~~~~~~~~  235 (488)
                      .+..++..+..++..+...............++.+...+.    ..      .     ...+...+.++..+........
T Consensus       520 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~  599 (876)
T d1qgra_         520 HQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQD  599 (876)
T ss_dssp             CSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHH
T ss_pred             ccHhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhHHHHHHHHHHHHHHHHHHHHcchhh
Confidence            3456788888888888776655444444444444444332    11      1     1233445555555554433221


Q ss_pred             HHHHHhCCHHHHHHhcCC--CCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHh
Q 011328          236 QAVIEAGVCPRLVELLRH--PSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNIT  313 (488)
Q Consensus       236 ~~~~~~~~l~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~  313 (488)
                      ..-....+++.+..++..  ++..++..++.+++.++..........++ .+++.+...+++..++.++..|+.+++.++
T Consensus       600 ~~~~~~~i~~~l~~~l~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~l~-~ii~~l~~~l~~~~~~~v~~~a~~~l~~l~  678 (876)
T d1qgra_         600 ALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYME-AFKPFLGIGLKNYAEYQVCLAAVGLVGDLC  678 (876)
T ss_dssp             HHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHH-HHHHHHHHHHHHCTTHHHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcchhhHHHHH-HHHHHHHHHHhCCCcHHHHHHHHHHHHHHH
Confidence            111112455667777654  45678889999999888654443333322 467888888877756789999999999887


Q ss_pred             cCCHHHHHHHHHcCChHHHHHHHhcC--ChhHHHHHHHHHHHhcc
Q 011328          314 AGNVNQIQAIIEAGIIGPLVNLLLNA--EFEIKKEAAWAISNATS  356 (488)
Q Consensus       314 ~~~~~~~~~l~~~~~l~~L~~ll~~~--~~~v~~~a~~aL~~l~~  356 (488)
                      ............ .+++.++..+.++  +..++..++++++.++.
T Consensus       679 ~~~~~~~~~~~~-~i~~~l~~~l~~~~~~~~~k~~~~~~i~~i~~  722 (876)
T d1qgra_         679 RALQSNIIPFCD-EVMQLLLENLGNENVHRSVKPQILSVFGDIAL  722 (876)
T ss_dssp             HHHGGGGHHHHH-HHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHH
T ss_pred             HHhHHhhhhhHH-HHHHHHHHHhCCccCCHHHHHHHHHHHHHHHH
Confidence            643333333333 4788888888765  56799999999988864

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.76  E-value=5.1e-07  Score=82.96  Aligned_cols=339  Identities=12%  Similarity=0.127  Sum_probs=197.8

Q ss_pred             CCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhH---HHHhC--CCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCC
Q 011328           73 GVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTR---VVIDH--GAVPIFVRLLSSPTDDVREQAVWALGNVAGDS  147 (488)
Q Consensus        73 ~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~---~~~~~--g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~  147 (488)
                      ..+..++++|.....+++....+..+..+...++....   .+.+.  ..-..+...+..++.-....+...+..++...
T Consensus        74 ~~~~~~l~lL~~~sk~d~vqyvL~Li~dLL~~d~~~~~~~~~~~~~~~~~~~~f~~~l~~~d~~~~~~s~~i~~ll~~~~  153 (477)
T d1ho8a_          74 KTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQNG  153 (477)
T ss_dssp             TTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTSTT
T ss_pred             HHHHHHHHHHhhcCcHHHHHHHHHHHHHHHhcCcchhHHHHHHhhCccchhHHHHHhccCchhHHHHHHHHHHHHHHhcc
Confidence            46788899998765588888888888887764442211   11111  12244555566666667777777778777654


Q ss_pred             chhHHHHHhcCChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChh--hhhchHHHHHHhhccCChhHHHHHHHHHH
Q 011328          148 PKCRDLVLSNGALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFE--QTRPALPALERLIHSNDDEVLTDACWALS  225 (488)
Q Consensus       148 ~~~~~~~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~--~~~~~~~~l~~ll~~~~~~v~~~al~~L~  225 (488)
                      .......-.......+...+...++......++.++..+...++.....  .....++.++..++.              
T Consensus       154 ~~~~~~~e~l~~~~~~l~~l~~~~~~~~~~i~v~~lq~llr~~~~R~~fw~~~~~~~~~l~~il~~--------------  219 (477)
T d1ho8a_         154 LHNVKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQR--------------  219 (477)
T ss_dssp             TCCHHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHH--------------
T ss_pred             ccccchHHHHHHhhHHHHHhhcccccchHHHHHHHHHHHhcCccHHHHHHHcccchHHHHHHHHHH--------------
Confidence            3322211110011223333335556666666777777776654222221  122334444444431              


Q ss_pred             HhccCCchhHHHHHHhCCHHHHHHhc-CCCCcchHhHHHHHHhHhhcCCchhhHHHhhC--CChHHHHHHhcccchhhHH
Q 011328          226 YLSDGTNDKIQAVIEAGVCPRLVELL-RHPSPSVLIPALRTVGNIVTGDDMQTQCIINH--QALPCLLDLLTQNYKKSIK  302 (488)
Q Consensus       226 ~l~~~~~~~~~~~~~~~~l~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~--~~~~~L~~lL~~~~~~~v~  302 (488)
                       ....+           ....++.-. .....+++..++.+++-++. ++.....+.+.  +.++.++.+++.....++.
T Consensus       220 -a~~~~-----------~~~~~~~~~~~~~~~Ql~Y~~ll~lWlLSF-~~~~~~~l~~~~~~~i~~l~~i~~~s~KEKvv  286 (477)
T d1ho8a_         220 -ATDSQ-----------LATRIVATNSNHLGIQLQYHSLLLIWLLTF-NPVFANELVQKYLSDFLDLLKLVKITIKEKVS  286 (477)
T ss_dssp             -HHC------------------------CCHHHHHHHHHHHHHHHTT-SHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHH
T ss_pred             -Hhccc-----------ccchhhcccCCCccHHHHHHHHHHHHHHHc-CHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHH
Confidence             11110           011111111 11234678899999999987 44455555554  3488888888766588899


Q ss_pred             HHHHHHHHHHhcCC----HH-HHHHHHHcCChHHHHHHHhcC---ChhHHHHHHHHHHHhccCC----------------
Q 011328          303 KEACWTISNITAGN----VN-QIQAIIEAGIIGPLVNLLLNA---EFEIKKEAAWAISNATSGG----------------  358 (488)
Q Consensus       303 ~~a~~~L~nl~~~~----~~-~~~~l~~~~~l~~L~~ll~~~---~~~v~~~a~~aL~~l~~~~----------------  358 (488)
                      +-++.++.|+....    .. ....++..++++. +..|...   |+++... +..|.......                
T Consensus       287 Rv~l~~l~Nll~~~~~~~~~~~~~~~v~~~~l~~-l~~L~~r~~~Dedl~ed-l~~L~~~L~~~~k~lTsfd~Y~~Ev~S  364 (477)
T d1ho8a_         287 RLCISIILQCCSTRVKQHKKVIKQLLLLGNALPT-VQSLSERKYSDEELRQD-ISNLKEILENEYQELTSFDEYVAELDS  364 (477)
T ss_dssp             HHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHHHH-HHHHHSSCCSSHHHHHH-HHHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhhhhhhhHHHHHHHHcchhHH-HHHHhcCCCCCHHHHHH-HHHHHHHHHHHHHhcCcHHHHHHHHhc
Confidence            99999999998731    11 2334556666655 4555543   6665432 22232222100                


Q ss_pred             -----CHHHH-HHHH--------HC--CChHHHHhhcC----------CCCHHHHHHHHHHHHHHHHhhhhhhccCCCCc
Q 011328          359 -----SNEQI-KFLV--------SQ--GCIKPLCDLLN----------CPDPRIVTVCLEGLENILKAGEAEKNMGNTGG  412 (488)
Q Consensus       359 -----~~~~~-~~l~--------~~--~~i~~L~~ll~----------~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~  412 (488)
                           +|-+. ..+.        ++  .++..|+++|+          +.|+.+...|+.=++.+++.-+..        
T Consensus       365 g~L~WSP~H~se~FW~EN~~kf~e~~~~llk~L~~lL~~~~~~~~~~~s~D~~~lAVAc~DiGefvr~~P~g--------  436 (477)
T d1ho8a_         365 KLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPES--------  436 (477)
T ss_dssp             TCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTH--------
T ss_pred             CCCCCCCCcCChhHHHHHHHhhcccchHHHHHHHHHHhhcccccccccCCCcceeehhhhhHHHHHHHCcch--------
Confidence                 11111 1111        11  34788888885          346777788888888888876643        


Q ss_pred             cchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 011328          413 VNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYW  452 (488)
Q Consensus       413 ~~~~~~~l~~~g~~~~L~~l~~~~~~~v~~~a~~~l~~~~  452 (488)
                          +..+++.|+-+.+.++++++|++|+..|..++.++.
T Consensus       437 ----r~il~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm  472 (477)
T d1ho8a_         437 ----IDVLDKTGGKADIMELLNHSDSRVKYEALKATQAII  472 (477)
T ss_dssp             ----HHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHH
T ss_pred             ----hHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence                778899999999999999999999999999887753

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.74  E-value=2.6e-07  Score=84.92  Aligned_cols=276  Identities=13%  Similarity=0.104  Sum_probs=181.1

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHH-HcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcCCCchhhHH
Q 011328           33 PAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVI-QSGVVPRFIEFLSRDDFPQLQFEAAWALTNIASGTSENTRV  111 (488)
Q Consensus        33 ~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~  111 (488)
                      +.+...+.+++.-....+...+..+++.. .......- .......+-.+...++ .+.+..|+.++..+.. .++.|..
T Consensus       125 ~~f~~~l~~~d~~~~~~s~~i~~ll~~~~-~~~~~~~e~l~~~~~~l~~l~~~~~-~~~~~i~v~~lq~llr-~~~~R~~  201 (477)
T d1ho8a_         125 QLFDVSLKGDFQTVLISGFNVVSLLVQNG-LHNVKLVEKLLKNNNLINILQNIEQ-MDTCYVCIRLLQELAV-IPEYRDV  201 (477)
T ss_dssp             HHHHHCSCSSHHHHHHHHHHHHHHHTSTT-TCCHHHHHHHHHCHHHHHHHHCTTC-HHHHHHHHHHHHHHHT-SHHHHHH
T ss_pred             HHHHHhccCchhHHHHHHHHHHHHHHhcc-ccccchHHHHHHhhHHHHHhhcccc-cchHHHHHHHHHHHhc-CccHHHH
Confidence            34555566677777777777778776654 23222111 1123334444446666 7888899999999998 8899988


Q ss_pred             HHhC--CCHHHHHHhhCC-----------------CCHHHHHHHHHHHhhhhCCCchhHHHHHhc--CChHHHHHHhccc
Q 011328          112 VIDH--GAVPIFVRLLSS-----------------PTDDVREQAVWALGNVAGDSPKCRDLVLSN--GALMPLLAQFNEH  170 (488)
Q Consensus       112 ~~~~--g~i~~L~~~L~~-----------------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~--~~l~~L~~ll~~~  170 (488)
                      +.+.  ..++.++..++.                 ....+.-.++.+++-++.+.. ....+.+.  +.+..++.++..+
T Consensus       202 fw~~~~~~~~~l~~il~~a~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~-~~~~l~~~~~~~i~~l~~i~~~s  280 (477)
T d1ho8a_         202 IWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNPV-FANELVQKYLSDFLDLLKLVKIT  280 (477)
T ss_dssp             HHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTTSHH-HHHHHHTTSHHHHHHHHHHHHHC
T ss_pred             HHHcccchHHHHHHHHHHHhcccccchhhcccCCCccHHHHHHHHHHHHHHHcCHH-HHHHHHHhhhHHHHHHHHHHHhh
Confidence            8643  345556655532                 124778889999999987544 44455443  3477888888778


Q ss_pred             ccHhHHHHHHHHHHHhhcCCCCCC------hhhhhchHHHHHHhhcc---CChhHHHHHHHHHHH-------hc------
Q 011328          171 AKLSMLRNATWTLSNFCRGKPQPL------FEQTRPALPALERLIHS---NDDEVLTDACWALSY-------LS------  228 (488)
Q Consensus       171 ~~~~v~~~a~~~L~~l~~~~~~~~------~~~~~~~~~~l~~ll~~---~~~~v~~~al~~L~~-------l~------  228 (488)
                      ..+.+.+-++.++.|++.......      .+...++++. +..|..   .|+++....-..-..       ++      
T Consensus       281 ~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~v~~~~l~~-l~~L~~r~~~Dedl~edl~~L~~~L~~~~k~lTsfd~Y~  359 (477)
T d1ho8a_         281 IKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNALPT-VQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYV  359 (477)
T ss_dssp             CSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHHHH-HHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHcchhHH-HHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence            889999999999999987642211      1222344544 444442   355554332221111       11      


Q ss_pred             ---------cCCchhHHHHHHh----------CCHHHHHHhcC----------CCCcchHhHHHHHHhHhhcCCchhhHH
Q 011328          229 ---------DGTNDKIQAVIEA----------GVCPRLVELLR----------HPSPSVLIPALRTVGNIVTGDDMQTQC  279 (488)
Q Consensus       229 ---------~~~~~~~~~~~~~----------~~l~~L~~lL~----------~~~~~v~~~a~~~L~~l~~~~~~~~~~  279 (488)
                               ..+....+.+...          .++..|+++|.          +.++.+..-||.=++.++++.|..+..
T Consensus       360 ~Ev~Sg~L~WSP~H~se~FW~EN~~kf~e~~~~llk~L~~lL~~~~~~~~~~~s~D~~~lAVAc~DiGefvr~~P~gr~i  439 (477)
T d1ho8a_         360 AELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDV  439 (477)
T ss_dssp             HHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHH
T ss_pred             HHHhcCCCCCCCCcCChhHHHHHHHhhcccchHHHHHHHHHHhhcccccccccCCCcceeehhhhhHHHHHHHCcchhHH
Confidence                     1111111222221          36788888885          235667788999999999999988888


Q ss_pred             HhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhc
Q 011328          280 IINHQALPCLLDLLTQNYKKSIKKEACWTISNITA  314 (488)
Q Consensus       280 ~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~  314 (488)
                      +-+.|+-..+++++.++ +++||.+|+.++..+..
T Consensus       440 l~~lg~K~~vM~Lm~h~-d~~Vr~eAL~avQklm~  473 (477)
T d1ho8a_         440 LDKTGGKADIMELLNHS-DSRVKYEALKATQAIIG  473 (477)
T ss_dssp             HHHHSHHHHHHHHTSCS-SHHHHHHHHHHHHHHHH
T ss_pred             HHHcCcHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence            88889999999999999 99999999999988764

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.43  E-value=3.5e-08  Score=73.98  Aligned_cols=109  Identities=18%  Similarity=0.222  Sum_probs=88.4

Q ss_pred             cCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChH
Q 011328          251 LRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIG  330 (488)
Q Consensus       251 L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~  330 (488)
                      |.++++.+|..|+++|+.+..            ..++.|+..|.++ ++.+|..|+++|+++..  +.         .++
T Consensus         1 L~D~~~~VR~~A~~aL~~~~~------------~~~~~L~~~l~d~-~~~vR~~a~~~L~~~~~--~~---------~~~   56 (111)
T d1te4a_           1 MADENKWVRRDVSTALSRMGD------------EAFEPLLESLSNE-DWRIRGAAAWIIGNFQD--ER---------AVE   56 (111)
T ss_dssp             CCSSCCCSSSSCCSSTTSCSS------------TTHHHHHHGGGCS-CHHHHHHHHHHHGGGCS--HH---------HHH
T ss_pred             CCCcCHHHHHHHHHHHHHhCH------------HHHHHHHHHHcCC-CHHHHHHHHHHHHhcch--hh---------hHH
Confidence            467788899999888876521            3467788999988 99999999999987742  22         578


Q ss_pred             HHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHH
Q 011328          331 PLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLE  395 (488)
Q Consensus       331 ~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~  395 (488)
                      .|..++.++++.||..|+++|+.+.   ++.         .++.|..+++++++.++..++.+|.
T Consensus        57 ~L~~~l~d~~~~VR~~a~~aL~~i~---~~~---------~~~~L~~ll~d~~~~vr~~A~~aL~  109 (111)
T d1te4a_          57 PLIKLLEDDSGFVRSGAARSLEQIG---GER---------VRAAMEKLAETGTGFARKVAVNYLE  109 (111)
T ss_dssp             HHHHHHHHCCTHHHHHHHHHHHHHC---SHH---------HHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred             HHHhhhccchhHHHHHHHHHHHHhC---ccc---------hHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            8899999999999999999999984   222         4677778999999999999988874

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.32  E-value=9.3e-08  Score=71.56  Aligned_cols=109  Identities=19%  Similarity=0.243  Sum_probs=88.4

Q ss_pred             hcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcCChH
Q 011328           82 LSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNGALM  161 (488)
Q Consensus        82 L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~  161 (488)
                      |.+++ +.+|..|+++|+.+..            ..++.|+..|.++++.+|..++++|+++..  +         +.++
T Consensus         1 L~D~~-~~VR~~A~~aL~~~~~------------~~~~~L~~~l~d~~~~vR~~a~~~L~~~~~--~---------~~~~   56 (111)
T d1te4a_           1 MADEN-KWVRRDVSTALSRMGD------------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD--E---------RAVE   56 (111)
T ss_dssp             CCSSC-CCSSSSCCSSTTSCSS------------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS--H---------HHHH
T ss_pred             CCCcC-HHHHHHHHHHHHHhCH------------HHHHHHHHHHcCCCHHHHHHHHHHHHhcch--h---------hhHH
Confidence            34566 7888888888766532            357889999999999999999999998742  1         2467


Q ss_pred             HHHHHhcccccHhHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHH
Q 011328          162 PLLAQFNEHAKLSMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALS  225 (488)
Q Consensus       162 ~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~  225 (488)
                      .++..+ .+.++.++..++++|..+..          ...++.+..+++++++.++..++.+|.
T Consensus        57 ~L~~~l-~d~~~~VR~~a~~aL~~i~~----------~~~~~~L~~ll~d~~~~vr~~A~~aL~  109 (111)
T d1te4a_          57 PLIKLL-EDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLE  109 (111)
T ss_dssp             HHHHHH-HHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred             HHHhhh-ccchhHHHHHHHHHHHHhCc----------cchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            888888 78899999999999998743          467889999999999999999988774

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.65  E-value=0.0054  Score=52.38  Aligned_cols=223  Identities=11%  Similarity=0.097  Sum_probs=161.3

Q ss_pred             hchHHHHHHhhccCChhHHHHHHHHHHHhccCCchh----HHHHHHh-CCHHHHHHhcCCCCcchHhHHHHHHhHhhcCC
Q 011328          199 RPALPALERLIHSNDDEVLTDACWALSYLSDGTNDK----IQAVIEA-GVCPRLVELLRHPSPSVLIPALRTVGNIVTGD  273 (488)
Q Consensus       199 ~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~----~~~~~~~-~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~  273 (488)
                      .+.+..++..|..-+-+.+..+..+..++.....+.    .+.+... +++..|+....  ++++...+-..|...+. .
T Consensus        68 ~d~l~~Li~~L~~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~~eil~~L~~gye--~~eiAl~~G~mLREcik-~  144 (330)
T d1upka_          68 SGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYE--SPEIALNCGIMLRECIR-H  144 (330)
T ss_dssp             HSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGG--STTTHHHHHHHHHHHHT-S
T ss_pred             hChHHHHHHhCCCCCCchhhhHHHHHHHHhhcCCCCCCccHHHHHcCHHHHHHHHhhcC--CcchhhhhhHHHHHHHh-h
Confidence            467888888888889999999999999988654322    2333322 34444554443  45666677667777666 5


Q ss_pred             chhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcC---ChHHHHHHHhcCChhHHHHHHHH
Q 011328          274 DMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAG---IIGPLVNLLLNAEFEIKKEAAWA  350 (488)
Q Consensus       274 ~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~---~l~~L~~ll~~~~~~v~~~a~~a  350 (488)
                      +...+.++....+..+.+.++.+ +.++...|..++..+...++.....++..+   ++.....++.+++.-+|..++..
T Consensus       145 e~lak~iL~s~~f~~fF~yv~~~-~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~s~NYVtrRqSlKL  223 (330)
T d1upka_         145 EPLAKIILWSEQFYDFFRYVEMS-TFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKL  223 (330)
T ss_dssp             HHHHHHHHHSGGGGHHHHHTTCS-SHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred             HHHHHHHHccHHHHHHHHHHcCC-chHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence            56777888888899999999999 999999999999998886677677766543   57777889999999999999999


Q ss_pred             HHHhccCCCH--HHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhc--cH
Q 011328          351 ISNATSGGSN--EQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAE--GL  426 (488)
Q Consensus       351 L~~l~~~~~~--~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g--~~  426 (488)
                      |+.+......  -..+++.+..-+..++.+|+++...++-.|...+.-++....+..         ++...+..+.  .+
T Consensus       224 LgelLldr~N~~vm~~Yvs~~~nLkl~M~LLrd~sk~Iq~EAFhVFKvFVANpnKp~---------~I~~IL~~Nr~kLl  294 (330)
T d1upka_         224 LGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQ---------PILDILLKNQAKLI  294 (330)
T ss_dssp             HHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCH---------HHHHHHHHTHHHHH
T ss_pred             HHHHHhhhhHHHHHHHHhCCHHHHHHHHHHhcCchhhHHHHhhhHhhhhhcCCCCCH---------HHHHHHHHhHHHHH
Confidence            9999864422  223455455678999999999999999888888776665544332         2556555442  35


Q ss_pred             HHHHHhhc
Q 011328          427 EKIENLQS  434 (488)
Q Consensus       427 ~~L~~l~~  434 (488)
                      +.|.++..
T Consensus       295 ~fl~~f~~  302 (330)
T d1upka_         295 EFLSKFQN  302 (330)
T ss_dssp             HHHHHTTT
T ss_pred             HHHHhCCC
Confidence            55555543

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.51  E-value=0.0049  Score=52.69  Aligned_cols=202  Identities=14%  Similarity=0.084  Sum_probs=146.4

Q ss_pred             HHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCCchh----hHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHH
Q 011328          236 QAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQ----TQCIINHQALPCLLDLLTQNYKKSIKKEACWTISN  311 (488)
Q Consensus       236 ~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~----~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~n  311 (488)
                      +.+...+.+..|+..|..-+.+.|..+..+.+++.+.....    ...+...  .+.+..++..-.++++-..+...|..
T Consensus        63 ~e~~~~d~l~~Li~~L~~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~--~eil~~L~~gye~~eiAl~~G~mLRE  140 (330)
T d1upka_          63 QELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQ--QNILFMLLKGYESPEIALNCGIMLRE  140 (330)
T ss_dssp             HHHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTC--THHHHHHHHGGGSTTTHHHHHHHHHH
T ss_pred             HHHHHhChHHHHHHhCCCCCCchhhhHHHHHHHHhhcCCCCCCccHHHHHcC--HHHHHHHHhhcCCcchhhhhhHHHHH
Confidence            44666788999999998888889999999999998754332    2333321  23444444443356666777777887


Q ss_pred             HhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHC---CChHHHHhhcCCCCHHHHH
Q 011328          312 ITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQ---GCIKPLCDLLNCPDPRIVT  388 (488)
Q Consensus       312 l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~---~~i~~L~~ll~~~~~~v~~  388 (488)
                      ++.+ +.....++...-+..+...++.++.++...|..++..+.... +.....+...   .+...+..++.+++.-++.
T Consensus       141 cik~-e~lak~iL~s~~f~~fF~yv~~~~FdiasDAf~TfkelLt~h-k~~~aefl~~Nyd~Ff~~~~~LL~s~NYVtrR  218 (330)
T d1upka_         141 CIRH-EPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRH-KLLSAEFLEQHYDRFFSEYEKLLHSENYVTKR  218 (330)
T ss_dssp             HHTS-HHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSS-HHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHH
T ss_pred             HHhh-HHHHHHHHccHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhC-HHHHHHHHHHhHHHHHHHHHHHhcCCchHHHH
Confidence            7776 777788888888999999999999999999999999988755 3433333333   3466777899999999999


Q ss_pred             HHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHH
Q 011328          389 VCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEKAVKILET  450 (488)
Q Consensus       389 ~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~~~~~v~~~a~~~l~~  450 (488)
                      +++..|+.++........         ....+.+..-+..+..++.+++..++-.|..+..-
T Consensus       219 qSlKLLgelLldr~N~~v---------m~~Yvs~~~nLkl~M~LLrd~sk~Iq~EAFhVFKv  271 (330)
T d1upka_         219 QSLKLLGELLLDRHNFTI---------MTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKV  271 (330)
T ss_dssp             HHHHHHHHHHHSGGGHHH---------HHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhHHHH---------HHHHhCCHHHHHHHHHHhcCchhhHHHHhhhHhhh
Confidence            999999999865443321         34455555567888888888888888777666543

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.44  E-value=0.014  Score=59.91  Aligned_cols=405  Identities=10%  Similarity=0.054  Sum_probs=200.2

Q ss_pred             ccHHHHHHHhcCC--CHHHHHHHHHHHHHHhccC-----CCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhc
Q 011328           30 ESLPAMVAGVWSD--DRNIQLDATTQFRKLLSIE-----RSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIA  102 (488)
Q Consensus        30 ~~i~~l~~~L~s~--~~~~~~~a~~~L~~l~~~~-----~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~  102 (488)
                      |-+..|++.+.++  +..+|..|+..|++.+...     .......-.+..+-..++..|.+++ ..+|...+.+++.++
T Consensus        35 ~f~~~L~~i~~~~~~~~~iR~~A~i~lKn~i~~~W~~~~~~~~i~~e~k~~Ik~~ll~~l~~~~-~~ir~~l~~~i~~I~  113 (959)
T d1wa5c_          35 GFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDENGNHLLPANNVELIKKEIVPLMISLP-NNLQVQIGEAISSIA  113 (959)
T ss_dssp             THHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSSSCBSSCHHHHHHHHHHHHHHHHHSC-HHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcccccccCCCCHHHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHH
Confidence            5566677777653  4679999999999887642     0001111112222344555555666 789999999999998


Q ss_pred             CC-CchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCc------hhHHHH--HhcCChHHHHHHhc-----
Q 011328          103 SG-TSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSP------KCRDLV--LSNGALMPLLAQFN-----  168 (488)
Q Consensus       103 ~~-~~~~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~------~~~~~~--~~~~~l~~L~~ll~-----  168 (488)
                      .. .|+..     .++++.+.+.++++++..+..++.++..++..-.      ......  .-....+.+..++.     
T Consensus       114 ~~d~p~~W-----p~ll~~l~~~l~s~~~~~~~~~L~~l~~i~k~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~  188 (959)
T d1wa5c_         114 DSDFPDRW-----PTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQ  188 (959)
T ss_dssp             HHHSTTTC-----TTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhCcccc-----HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHhhhcchhHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            72 12221     2578899999999889999999999998874311      111100  00112222232221     


Q ss_pred             --cccc-H-------hHHHHHHHHHHHhhcCCCCCC-hhhhhchHHHHHHhhccCC---------------hhHHHHHHH
Q 011328          169 --EHAK-L-------SMLRNATWTLSNFCRGKPQPL-FEQTRPALPALERLIHSND---------------DEVLTDACW  222 (488)
Q Consensus       169 --~~~~-~-------~v~~~a~~~L~~l~~~~~~~~-~~~~~~~~~~l~~ll~~~~---------------~~v~~~al~  222 (488)
                        .... .       .....+...+..+........ ..........+..++....               ..++...+.
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~  268 (959)
T d1wa5c_         189 ITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNIQVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQE  268 (959)
T ss_dssp             TTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTHHHHHHHHHHHHSCCSCCCC------CCCHHHHHHHHHHH
T ss_pred             HhhccchHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHhcccccccCchhhhhhhHHHHHHHHHHH
Confidence              1111 0       111222233333332221100 0111233333444443211               135555666


Q ss_pred             HHHHhccCCchhHHHHHHhCCHHHHHHhc----CC-CCcchHhHHHHHHhHhhcCCchhhH----HHhhCCChHHHHHHh
Q 011328          223 ALSYLSDGTNDKIQAVIEAGVCPRLVELL----RH-PSPSVLIPALRTVGNIVTGDDMQTQ----CIINHQALPCLLDLL  293 (488)
Q Consensus       223 ~L~~l~~~~~~~~~~~~~~~~l~~L~~lL----~~-~~~~v~~~a~~~L~~l~~~~~~~~~----~~~~~~~~~~L~~lL  293 (488)
                      .+..+....++....... .++..+...+    .. ..+.+...++..+..++........    ..+..-+...+...+
T Consensus       269 ~l~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~i~~~li~~~~  347 (959)
T d1wa5c_         269 LVQLYTTRYEDVFGPMIN-EFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIPKYFEIFNNESAMNNITEQIILPNV  347 (959)
T ss_dssp             HHHHHHHHCHHHHHHHHH-HHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSHHHHGGGCSHHHHHHHHHHTHHHHH
T ss_pred             HHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence            666665544433333322 2333333333    12 3345666677777766653221110    000000111122222


Q ss_pred             cc----------------------cchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh--cCChhHHHHHHH
Q 011328          294 TQ----------------------NYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLL--NAEFEIKKEAAW  349 (488)
Q Consensus       294 ~~----------------------~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~--~~~~~v~~~a~~  349 (488)
                      ..                      ......|..+...+..++...++.....+..-+...+.....  +.++..+..++.
T Consensus       348 ~~~~~d~e~~~~dp~~~~~~~~~~~~~~~~r~~a~~ll~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~e~~~~  427 (959)
T d1wa5c_         348 TLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIY  427 (959)
T ss_dssp             SCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHC----CHHHHHHHHH
T ss_pred             cCCHHHHHHHhcchHHHHHHHhhhcccccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhhccCCccchHHHHHHHH
Confidence            11                      102235666677777777644443322221111112222222  236677788888


Q ss_pred             HHHHhccCCC------------HHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHH
Q 011328          350 AISNATSGGS------------NEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFA  417 (488)
Q Consensus       350 aL~~l~~~~~------------~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~  417 (488)
                      +++.+...+.            .+....+..  .+...........+.++..+++++..+.....              .
T Consensus       428 ~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~--~v~~~l~~~~~~~~~lr~~~~~~i~~~~~~~~--------------~  491 (959)
T d1wa5c_         428 LFTALAINGNITNAGVSSTNNLLNVVDFFTK--EIAPDLTSNNIPHIILRVDAIKYIYTFRNQLT--------------K  491 (959)
T ss_dssp             HHHHHHBSSCCBTTBCCCBCTTCCHHHHHHH--HTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSC--------------H
T ss_pred             HHHHHHhhhhhhhhhhhcccchhhHHHHHHH--HHHHHHccCCCchHHHHHHHHHHHHHHHhhcc--------------H
Confidence            8887764321            011122111  12222222344556788888888877654322              1


Q ss_pred             HHHHhhccHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCCC
Q 011328          418 QAIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWVEEDEDE  459 (488)
Q Consensus       418 ~~l~~~g~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~~~~~  459 (488)
                      ..+.  ..++.+..++.+++..|+..|...+.++.+..++..
T Consensus       492 ~~~~--~~~~~l~~~L~~~~~~V~~~a~~al~~~~~~~~~~~  531 (959)
T d1wa5c_         492 AQLI--ELMPILATFLQTDEYVVYTYAAITIEKILTIRESNT  531 (959)
T ss_dssp             HHHH--HHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSS
T ss_pred             HHHH--HHHHHHHHHhCCCchhHHHHHHHHHHHHHHhhcccc
Confidence            2222  236777888888999999999999999998766643

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=96.95  E-value=0.00019  Score=60.11  Aligned_cols=41  Identities=15%  Similarity=0.159  Sum_probs=27.9

Q ss_pred             HhhcCCCChhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHH
Q 011328           80 EFLSRDDFPQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWA  139 (488)
Q Consensus        80 ~lL~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~  139 (488)
                      .+|.++. .++|..|++                  +-.+..|..+++++++.||..++..
T Consensus        49 ~~l~~p~-~e~Ra~Aa~------------------~a~~~~L~~Ll~D~d~~VR~~AA~~   89 (233)
T d1lrva_          49 QYLADPF-WERRAIAVR------------------YSPVEALTPLIRDSDEVVRRAVAYR   89 (233)
T ss_dssp             GGTTCSS-HHHHHHHHT------------------TSCGGGGGGGTTCSSHHHHHHHHTT
T ss_pred             HHhcCCc-HHHHHHHHh------------------cCCHHHHHHHhcCCCHHHHHHHHHH
Confidence            3566666 677765543                  1235677778888888898888754

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.72  E-value=0.067  Score=54.47  Aligned_cols=181  Identities=8%  Similarity=0.085  Sum_probs=105.7

Q ss_pred             hhHHHHHHHHHHHhcCCCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchh--------HHHHHh--c
Q 011328           88 PQLQFEAAWALTNIASGTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKC--------RDLVLS--N  157 (488)
Q Consensus        88 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~--------~~~~~~--~  157 (488)
                      +.++..++++++..+.....  ..+  ..+++.++.+|.+++..++..|++++..++......        .+.+..  .
T Consensus       472 ~~lr~~~~~~i~~~~~~~~~--~~~--~~~~~~l~~~L~~~~~~V~~~a~~al~~~~~~~~~~~~~~~~~~~~~l~p~l~  547 (959)
T d1wa5c_         472 IILRVDAIKYIYTFRNQLTK--AQL--IELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTE  547 (959)
T ss_dssp             HHHHHHHHHHHHHTGGGSCH--HHH--HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHH
T ss_pred             HHHHHHHHHHHHHHHhhccH--HHH--HHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhhcccccchhhccHHHHHhhHH
Confidence            67899999999998873221  111  246889999999999999999999999997532210        000000  0


Q ss_pred             CChHHHHHHhcccccH----hHHHHHHHHHHHhhcCCCCCChhhhhchHHHHHHhhc----c-CChhHHHHHHHHHHHhc
Q 011328          158 GALMPLLAQFNEHAKL----SMLRNATWTLSNFCRGKPQPLFEQTRPALPALERLIH----S-NDDEVLTDACWALSYLS  228 (488)
Q Consensus       158 ~~l~~L~~ll~~~~~~----~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~ll~----~-~~~~v~~~al~~L~~l~  228 (488)
                      ..+..++..+......    .....++.++..+..............+++.+...+.    + .++.....+..++..+.
T Consensus       548 ~ll~~L~~~l~~~~~~~~~~~~~~~ll~~l~~ii~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~e~l~~l~  627 (959)
T d1wa5c_         548 ILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAIL  627 (959)
T ss_dssp             HHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHH
Confidence            1233344444222111    1123455666655543333333344455555555443    2 25667777778888776


Q ss_pred             cCC-chhHHHHHHhCCHHHHHHhcCCCCcchHhHHHHHHhHhhcCC
Q 011328          229 DGT-NDKIQAVIEAGVCPRLVELLRHPSPSVLIPALRTVGNIVTGD  273 (488)
Q Consensus       229 ~~~-~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~  273 (488)
                      ... ++... -....+++.+...+..........++..+..+....
T Consensus       628 ~~~~~~~~~-~l~~~l~p~i~~~~~~~~~~~~~~~~~l~~~~~~~~  672 (959)
T d1wa5c_         628 NYTQRQNLP-LLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQS  672 (959)
T ss_dssp             HTSCGGGHH-HHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHC
T ss_pred             HhcCchhHH-HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhC
Confidence            443 22323 333466788888887766677777887777766543

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=96.52  E-value=0.0012  Score=55.08  Aligned_cols=114  Identities=11%  Similarity=0.136  Sum_probs=63.9

Q ss_pred             HHHHHHhcCCCCcchHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHH
Q 011328          244 CPRLVELLRHPSPSVLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAI  323 (488)
Q Consensus       244 l~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l  323 (488)
                      +..|..+++++++.||..+...|.                  .+.+..++.++ +..||..++..+.             
T Consensus        68 ~~~L~~Ll~D~d~~VR~~AA~~Lp------------------~~~L~~L~~D~-d~~VR~~aa~~l~-------------  115 (233)
T d1lrva_          68 VEALTPLIRDSDEVVRRAVAYRLP------------------REQLSALMFDE-DREVRITVADRLP-------------  115 (233)
T ss_dssp             GGGGGGGTTCSSHHHHHHHHTTSC------------------SGGGGGTTTCS-CHHHHHHHHHHSC-------------
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHcC------------------HHHHHHHhcCC-ChhHHHHHHhccC-------------
Confidence            456778888888889888865431                  12345555666 6777766554321             


Q ss_pred             HHcCChHHHHHHHhcCChhHHHHHHHH-----HHHhccCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHH
Q 011328          324 IEAGIIGPLVNLLLNAEFEIKKEAAWA-----ISNATSGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGL  394 (488)
Q Consensus       324 ~~~~~l~~L~~ll~~~~~~v~~~a~~a-----L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L  394 (488)
                           .+.|..++.++++.|+..++..     |..++...+++........-..+.|..+++++++.++..+...+
T Consensus       116 -----~~~L~~Ll~D~d~~VR~~aa~~~~~~~L~~L~~D~d~~VR~~aA~~~~~~~L~~l~~D~d~~VR~~aa~~L  186 (233)
T d1lrva_         116 -----LEQLEQMAADRDYLVRAYVVQRIPPGRLFRFMRDEDRQVRKLVAKRLPEESLGLMTQDPEPEVRRIVASRL  186 (233)
T ss_dssp             -----TGGGGGGTTCSSHHHHHHHHHHSCGGGGGGTTTCSCHHHHHHHHHHSCGGGGGGSTTCSSHHHHHHHHHHC
T ss_pred             -----HHHHHHHhcCCCHHHHHHHHhccchhHHHHHhcCCCHHHHHHHHHhcCHHHHHHHccCCCHHHHHHHHHhc
Confidence                 1223334445555555554432     22222333344444444444566777777778888877766543

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Lipovitellin-phosvitin complex, superhelical domain
family: Lipovitellin-phosvitin complex, superhelical domain
domain: Lipovitellin-phosvitin complex, superhelical domain
species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]

Probab=96.31  E-value=0.3  Score=42.64  Aligned_cols=207  Identities=14%  Similarity=0.120  Sum_probs=125.0

Q ss_pred             CHHHHHHhhCCCC--HHHHHHHHHHHhhhhCCCchhHHHHHhcCChHHHHHHhcc---cccHhHHHHHHHHHHHhhc---
Q 011328          117 AVPIFVRLLSSPT--DDVREQAVWALGNVAGDSPKCRDLVLSNGALMPLLAQFNE---HAKLSMLRNATWTLSNFCR---  188 (488)
Q Consensus       117 ~i~~L~~~L~~~~--~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~---~~~~~v~~~a~~~L~~l~~---  188 (488)
                      .+..+.+++.++.  ..-....+..+.....  |. .+      .+..+..++..   ..++.++..+..+++++..   
T Consensus        89 a~~~i~~~I~~~~ls~~ea~~~l~~l~~~~~--Pt-~~------~l~~~~~l~~~~~~~~~~~l~~~a~La~gslv~~~c  159 (336)
T d1lsha1          89 ALLFLKRTLASEQLTSAEATQIVASTLSNQQ--AT-RE------SLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYC  159 (336)
T ss_dssp             HHHHHHHHHHTTCSCHHHHHHHHHHHHHTCC--CC-HH------HHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHhccCC--CC-HH------HHHHHHHHHcCcccccchhHHHHHHHHHHHHHHHHh
Confidence            4555666665533  3333334444443332  21 12      23445555521   2456777777777776654   


Q ss_pred             -CCCCCChhhhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCCC-------CcchHh
Q 011328          189 -GKPQPLFEQTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRHP-------SPSVLI  260 (488)
Q Consensus       189 -~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-------~~~v~~  260 (488)
                       ..+.........+...+.+.....+.+-+..++.+|+|+..  +         +.++.+..++...       ...+|.
T Consensus       160 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~--p---------~~i~~l~~~l~~~~~~~~~~~~~vR~  228 (336)
T d1lsha1         160 ANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ--P---------NSIKKIQRFLPGQGKSLDEYSTRVQA  228 (336)
T ss_dssp             TTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC--G---------GGHHHHHTTSTTSSSCCCCSCHHHHH
T ss_pred             cCCCCCcHHHHHHHHHHHHHhhcccchHHHHHHHHHHhccCC--H---------hHHHHHHHHhcccccccccccHHHHH
Confidence             33333333444555556666667787888889999999853  1         3456677776432       356899


Q ss_pred             HHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhc-ccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhc-
Q 011328          261 PALRTVGNIVTGDDMQTQCIINHQALPCLLDLLT-QNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLN-  338 (488)
Q Consensus       261 ~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~-~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~-  338 (488)
                      .|++++..++...+...        .+.+.+++. ...+.++|..|+..+... ..+..         .+..+...+.. 
T Consensus       229 aAi~Alr~~~~~~p~~v--------~~~l~~i~~n~~e~~EvRiaA~~~lm~t-~P~~~---------~l~~i~~~l~~E  290 (336)
T d1lsha1         229 EAIMALRNIAKRDPRKV--------QEIVLPIFLNVAIKSELRIRSCIVFFES-KPSVA---------LVSMVAVRLRRE  290 (336)
T ss_dssp             HHHHTTTTGGGTCHHHH--------HHHHHHHHHCTTSCHHHHHHHHHHHHHT-CCCHH---------HHHHHHHHHTTC
T ss_pred             HHHHHHHHhhhcCcHHH--------HHHHHHHHcCCCCChHHHHHHHHHHHhc-CCCHH---------HHHHHHHHHHhC
Confidence            99999999987654332        344555553 333688999988888654 22233         34445555644 


Q ss_pred             CChhHHHHHHHHHHHhccCCCHH
Q 011328          339 AEFEIKKEAAWAISNATSGGSNE  361 (488)
Q Consensus       339 ~~~~v~~~a~~aL~~l~~~~~~~  361 (488)
                      ++..|.......|.+++....|+
T Consensus       291 ~~~QV~sfv~S~l~~la~s~~P~  313 (336)
T d1lsha1         291 PNLQVASFVYSQMRSLSRSSNPE  313 (336)
T ss_dssp             SCHHHHHHHHHHHHHHTTCCSGG
T ss_pred             cHHHHHHHHHHHHHHHHhCCCcc
Confidence            48889999999999998766554

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Lipovitellin-phosvitin complex, superhelical domain
family: Lipovitellin-phosvitin complex, superhelical domain
domain: Lipovitellin-phosvitin complex, superhelical domain
species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]

Probab=95.90  E-value=0.11  Score=45.55  Aligned_cols=165  Identities=15%  Similarity=0.181  Sum_probs=109.3

Q ss_pred             HHHHHHhhCC----CCHHHHHHHHHHHhhhh----CCCchhHHHHHhcCChHHHHHHhc---ccccHhHHHHHHHHHHHh
Q 011328          118 VPIFVRLLSS----PTDDVREQAVWALGNVA----GDSPKCRDLVLSNGALMPLLAQFN---EHAKLSMLRNATWTLSNF  186 (488)
Q Consensus       118 i~~L~~~L~~----~~~~v~~~a~~~L~~l~----~~~~~~~~~~~~~~~l~~L~~ll~---~~~~~~v~~~a~~~L~~l  186 (488)
                      +..+..++++    .++.++..+.-++++++    ...+.+..     ..++.+...+.   ...+.+-+..++.+|+|+
T Consensus       125 l~~~~~l~~~~~~~~~~~l~~~a~La~gslv~~~c~~~~~~~~-----~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~  199 (336)
T d1lsha1         125 LSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPD-----ELLQPLHDLLSQSSDRAKEEEIVLALKALGNA  199 (336)
T ss_dssp             HHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCG-----GGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCcccccchhHHHHHHHHHHHHHHHHhcCCCCCcH-----HHHHHHHHHHHHhhcccchHHHHHHHHHHhcc
Confidence            5666667765    57888889988888875    23222222     23444444442   334555666788999998


Q ss_pred             hcCCCCCChhhhhchHHHHHHhhcc-------CChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCC--CCcc
Q 011328          187 CRGKPQPLFEQTRPALPALERLIHS-------NDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH--PSPS  257 (488)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~l~~ll~~-------~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~--~~~~  257 (488)
                      ..          ...++.+..++..       ....++..|++++.++....+....        +.+.+++.+  .+++
T Consensus       200 g~----------p~~i~~l~~~l~~~~~~~~~~~~~vR~aAi~Alr~~~~~~p~~v~--------~~l~~i~~n~~e~~E  261 (336)
T d1lsha1         200 GQ----------PNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKVQ--------EIVLPIFLNVAIKSE  261 (336)
T ss_dssp             TC----------GGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHHH--------HHHHHHHHCTTSCHH
T ss_pred             CC----------HhHHHHHHHHhcccccccccccHHHHHHHHHHHHHhhhcCcHHHH--------HHHHHHHcCCCCChH
Confidence            64          2567788888753       2467999999999999876553322        344444433  5678


Q ss_pred             hHhHHHHHHhHhhcCCchhhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcC
Q 011328          258 VLIPALRTVGNIVTGDDMQTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAG  315 (488)
Q Consensus       258 v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~  315 (488)
                      +|..|+..|...   +|..       ..+..+...+..+.+..|+......|.+++..
T Consensus       262 vRiaA~~~lm~t---~P~~-------~~l~~i~~~l~~E~~~QV~sfv~S~l~~la~s  309 (336)
T d1lsha1         262 LRIRSCIVFFES---KPSV-------ALVSMVAVRLRREPNLQVASFVYSQMRSLSRS  309 (336)
T ss_dssp             HHHHHHHHHHHT---CCCH-------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHhc---CCCH-------HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhC
Confidence            998888877542   2322       24566777777766889999999999999884

>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Diap1 N-terninal region-like
domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.03  E-value=0.14  Score=45.08  Aligned_cols=139  Identities=13%  Similarity=0.072  Sum_probs=99.4

Q ss_pred             hhhHHHHHHHHHHHHhcCCHHHHHHHH-HcCChHHHHHHHhcCChhHHHHHHHHHHHhccCCC-HH----------HHHH
Q 011328          298 KKSIKKEACWTISNITAGNVNQIQAII-EAGIIGPLVNLLLNAEFEIKKEAAWAISNATSGGS-NE----------QIKF  365 (488)
Q Consensus       298 ~~~v~~~a~~~L~nl~~~~~~~~~~l~-~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~-~~----------~~~~  365 (488)
                      +.....+++.++..+... ......++ ..+.+..+...+.++...++..|...|..++.... ++          ....
T Consensus        69 d~~~e~e~l~CLkalmn~-~~G~~~vl~~~~~i~~l~~~L~s~~~~tr~~a~elL~~lc~~~~~~~g~~~vL~Al~~~~~  147 (343)
T d2bnxa1          69 DSRNQHEIIRCLKAFMNN-KFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAE  147 (343)
T ss_dssp             HHHHHHHHHHHHHHHTSS-HHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhcc-HHHHHHHHcChHHHHHHHHccCCCchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHH
Confidence            345677888999888775 44455554 46778999999999999999999999988875321 11          1122


Q ss_pred             HHHCCChHHHHhhcCCC-CHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhcCCCHHHHHH
Q 011328          366 LVSQGCIKPLCDLLNCP-DPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQSHDNTEIYEK  443 (488)
Q Consensus       366 l~~~~~i~~L~~ll~~~-~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~~~~~~v~~~  443 (488)
                      ..+.+-...+++.++.. +.+.+..++..+..++...+....      ....+..|...|..+.+..+.+.+++++...
T Consensus       148 ~~e~~RF~~lv~~l~~~~~~ey~~a~m~lIN~li~~~~dl~~------R~~lR~E~~~~Gl~~il~~l~~~~~~~L~~Q  220 (343)
T d2bnxa1         148 MDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDF------RVHIRSELMRLGLHQVLQELREIENEDMKVQ  220 (343)
T ss_dssp             HHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHH------HHHHHHHHHHTTHHHHHHHHTTCCCHHHHHH
T ss_pred             hcCCCcHHHHHHHHhccccHHHHHHHHHHHHHHHcCcccHHH------HHHHHHHHHHCChHHHHHHHHccCChHHHHH
Confidence            33456778888888754 467777788888777765443322      2336788899999999999998888887544

>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Diap1 N-terninal region-like
domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.74  E-value=0.85  Score=39.71  Aligned_cols=142  Identities=10%  Similarity=0.098  Sum_probs=92.0

Q ss_pred             HHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhc----CC------CChhHHHHHHHHHHHhcCCCchhhHH-HHhCC
Q 011328           48 LDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLS----RD------DFPQLQFEAAWALTNIASGTSENTRV-VIDHG  116 (488)
Q Consensus        48 ~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~----~~------~~~~v~~~a~~~L~~l~~~~~~~~~~-~~~~g  116 (488)
                      ...+.-|.--+.+.+....+.+ ..+++..|+++|.    ..      .....+..+++||..+.. +...... +-..+
T Consensus        21 ~~~L~sL~v~Lrt~~~sWv~~F-~~~G~~~L~~~L~~l~~~~~~~~~~~d~~~e~e~l~CLkalmn-~~~G~~~vl~~~~   98 (343)
T d2bnxa1          21 LSCLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN-NKFGIKTMLETEE   98 (343)
T ss_dssp             HHHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTS-SHHHHHHHHHSSS
T ss_pred             HHHHHHHHHHHhcCCchHHHHH-HhccHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHhc-cHHHHHHHHcChH
Confidence            3344444443444433445555 4456777777663    11      114578889999999998 4444444 45668


Q ss_pred             CHHHHHHhhCCCCHHHHHHHHHHHhhhhCCC--chhHHH----------HHhcCChHHHHHHhcccccHhHHHHHHHHHH
Q 011328          117 AVPIFVRLLSSPTDDVREQAVWALGNVAGDS--PKCRDL----------VLSNGALMPLLAQFNEHAKLSMLRNATWTLS  184 (488)
Q Consensus       117 ~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~--~~~~~~----------~~~~~~l~~L~~ll~~~~~~~v~~~a~~~L~  184 (488)
                      .+..+...+.++.+.++..|+.+|..+|..+  +.....          ..+.+-..+++..+....+.+.+..++..+-
T Consensus        99 ~i~~l~~~L~s~~~~tr~~a~elL~~lc~~~~~~~g~~~vL~Al~~~~~~~e~~RF~~lv~~l~~~~~~ey~~a~m~lIN  178 (343)
T d2bnxa1          99 GILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLIN  178 (343)
T ss_dssp             HHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHH
T ss_pred             HHHHHHHccCCCchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHhcCCCcHHHHHHHHhccccHHHHHHHHHHHH
Confidence            8999999999999999999999999998543  111122          2233456777777755556677777777676


Q ss_pred             HhhcCCC
Q 011328          185 NFCRGKP  191 (488)
Q Consensus       185 ~l~~~~~  191 (488)
                      .+..+.+
T Consensus       179 ~li~~~~  185 (343)
T d2bnxa1         179 ALITPAE  185 (343)
T ss_dssp             HHHTTCS
T ss_pred             HHHcCcc
Confidence            6766543

>d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.69  E-value=0.5  Score=35.28  Aligned_cols=73  Identities=8%  Similarity=-0.047  Sum_probs=60.7

Q ss_pred             ChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCC------CCHHHHHHHHHHHHHHHHh
Q 011328          328 IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNC------PDPRIVTVCLEGLENILKA  400 (488)
Q Consensus       328 ~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~------~~~~v~~~al~~L~~l~~~  400 (488)
                      ++..+..-+.++++.++..|+..|-.++.++++.+...+.+.+++..|.++++.      .+..|+..++..+..-...
T Consensus        46 a~r~l~krl~~~~~~~~l~aL~LLe~~vkNCG~~f~~evas~~Fl~~L~kli~~k~~~~~~~~~Vk~kil~li~~W~~~  124 (145)
T d1ujka_          46 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVG  124 (145)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHTSCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHhhccCCCCCcHHHHHHHHHHHHHHHHH
Confidence            455567778888999999999999999999999998999888999999999863      4567888888888765443

>d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.95  E-value=0.92  Score=33.67  Aligned_cols=73  Identities=8%  Similarity=-0.094  Sum_probs=60.3

Q ss_pred             ChHHHHHHHhcCChhHHHHHHHHHHHhccCCCHHHHHHHHHCCChHHHHhhcCC------CCHHHHHHHHHHHHHHHHh
Q 011328          328 IIGPLVNLLLNAEFEIKKEAAWAISNATSGGSNEQIKFLVSQGCIKPLCDLLNC------PDPRIVTVCLEGLENILKA  400 (488)
Q Consensus       328 ~l~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~------~~~~v~~~al~~L~~l~~~  400 (488)
                      ++..|..-+.++++.++..|+..|-.++.++++.+...+....+++.|.+++..      .++.|+..++..+......
T Consensus        39 a~ral~krl~~~n~~~~l~aL~LLe~~vkNcG~~fh~evask~Fl~~l~~li~~k~~~~~~~~~Vk~kil~li~~Wa~~  117 (143)
T d1mhqa_          39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTVW  117 (143)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence            445566778888999999999999999999988888888888999999999863      4678998988888766543

>d2jaka1 a.118.1.20 (A:30-372) Serine/threonine-protein phosphatase 2A regulatory subunit B56-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: B56-like
domain: Serine/threonine-protein phosphatase 2A regulatory subunit B56-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.19  E-value=1.7  Score=37.41  Aligned_cols=200  Identities=16%  Similarity=0.123  Sum_probs=96.9

Q ss_pred             HHHHhhcC-CCCChhhHHHHhhhccHHHHHHHhcCCC----HHHHHHHHHHHH-HHhccCCCccHHHHHHcCCHHHHHHh
Q 011328            8 CFVCFSLL-KPMDPMFFIIQLQLESLPAMVAGVWSDD----RNIQLDATTQFR-KLLSIERSPPINEVIQSGVVPRFIEF   81 (488)
Q Consensus         8 ~~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~~L~s~~----~~~~~~a~~~L~-~l~~~~~~~~~~~~~~~~~i~~L~~l   81 (488)
                      |-..+.|. -|.... ..+..+...+..+++.+.+.+    +++.......+. |+...- +...... .....+.--.-
T Consensus        20 C~~i~DF~~d~~~d~-~~K~~K~~~L~el~~~~~~~~~~l~e~~~~~i~~Mi~~NifR~l-Pp~~~~~-~~~~~~e~d~~   96 (343)
T d2jaka1          20 CCVLFDFVSDPLSDL-KWKEVKRAALSEMVEYITHNRNVITEPIYPEVVHMFAVNMFRTL-PPSSNPT-GAEFDPEEDEP   96 (343)
T ss_dssp             TTCCCCCSSCSSSSH-HHHHHHHHHHHHHHHHHTTCCSCCCTTHHHHHHHHHHHHHCSCC-CC----------------C
T ss_pred             hCcccCCCCCccccH-HHHHHHHHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHhCCCC-CCCCCcc-ccccCcccccc
Confidence            44456673 355553 344667777888888887532    222222222222 211111 1111100 00000000111


Q ss_pred             hcCCCChhHHHHHHHHHHHhcC---CCchhhHHHHhCCCHHHHHHhhCCCCHHHHHHHHHHHhhhhCCCchhHHHHHhcC
Q 011328           82 LSRDDFPQLQFEAAWALTNIAS---GTSENTRVVIDHGAVPIFVRLLSSPTDDVREQAVWALGNVAGDSPKCRDLVLSNG  158 (488)
Q Consensus        82 L~~~~~~~v~~~a~~~L~~l~~---~~~~~~~~~~~~g~i~~L~~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~  158 (488)
                      ..++.|+.++. +-..+..+..   -++......++...+..|+.++.++++.=|+....+|..+-..-...|..+.. .
T Consensus        97 ~~e~sWpHL~l-VY~ill~f~~s~~~~~~~~~~~id~~Fi~~Ll~lf~S~D~rER~~lk~~l~~iy~kf~~~R~~Ir~-~  174 (343)
T d2jaka1          97 TLEAAWPHLQL-VYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRK-Q  174 (343)
T ss_dssp             CCCTTHHHHHH-HHHHHHHHHHCTTCCHHHHTTTSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCGGGHHHHHH-H
T ss_pred             ccCCCCchHHH-HHHHHHHHHhccccCchhHHhhCCHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhhhhHHHHHHH-H
Confidence            22344565543 3334444443   12233334445566788899999999999999999998886555555554433 2


Q ss_pred             ChHHHHHHhcccccHhHHHHHHHHHHHhhcCCCC-CChhhhhchHHHHHHhhccC
Q 011328          159 ALMPLLAQFNEHAKLSMLRNATWTLSNFCRGKPQ-PLFEQTRPALPALERLIHSN  212 (488)
Q Consensus       159 ~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~~~~l~~ll~~~  212 (488)
                      ....+.+.+.......-...++..++.+..+-.. .......-....++.+.+..
T Consensus       175 i~~if~~fi~e~~~~~gI~elLeil~sii~gf~~plkeeh~~f~~~vllPLhk~~  229 (343)
T d2jaka1         175 INNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVK  229 (343)
T ss_dssp             HHHHHHHHHTSSCCCSCHHHHHHHHHHHHHTCCSSCCHHHHHHHHHTTGGGGTSG
T ss_pred             HHHHHHHHhhcCCCCccHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHhccCc
Confidence            3344555553334444455666777777665422 23333333444444554443

>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: Hrs
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=85.71  E-value=0.87  Score=33.92  Aligned_cols=76  Identities=17%  Similarity=0.242  Sum_probs=58.2

Q ss_pred             ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhc-CCCHHHHHHHHHHHH
Q 011328          371 CIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQS-HDNTEIYEKAVKILE  449 (488)
Q Consensus       371 ~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~-~~~~~v~~~a~~~l~  449 (488)
                      ++..|.+-+.++++.++..|+..|..+++.+...           |...+.+.+.++.|..+.. ..+..|++++..++.
T Consensus        43 a~ral~krl~~~n~~v~l~aL~LLd~~vkNcG~~-----------f~~~i~s~~fl~~l~~l~~~~~~~~Vk~kil~li~  111 (145)
T d1dvpa1          43 AFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAP-----------VHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQ  111 (145)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHH-----------HHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHccchH-----------HHHHHhhHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            4666677788899999999999999999875432           5666666667777777754 457889999999998


Q ss_pred             HhcCCCCC
Q 011328          450 TYWVEEDE  457 (488)
Q Consensus       450 ~~~~~~~~  457 (488)
                      ........
T Consensus       112 ~W~~~f~~  119 (145)
T d1dvpa1         112 TWAYAFRS  119 (145)
T ss_dssp             HHHHHTTT
T ss_pred             HHHHHhCC
Confidence            87665554

>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: Hrs
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=83.83  E-value=0.38  Score=36.00  Aligned_cols=74  Identities=12%  Similarity=0.089  Sum_probs=57.6

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCCCChhHHHHHHHHHHHhcC
Q 011328           30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRDDFPQLQFEAAWALTNIAS  103 (488)
Q Consensus        30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~~v~~~a~~~L~~l~~  103 (488)
                      ..+..|.+.|++.++.+++.|+..|-.+..+-+......+...+++..|.+++++.....++..++..+...+.
T Consensus        42 ~a~ral~krl~~~n~~v~l~aL~LLd~~vkNcG~~f~~~i~s~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~  115 (145)
T d1dvpa1          42 NAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAY  115 (145)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHccchHHHHHHhhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence            45677888889999999999999999988764334455555677888888888765447899999888877654

>d2jaka1 a.118.1.20 (A:30-372) Serine/threonine-protein phosphatase 2A regulatory subunit B56-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: B56-like
domain: Serine/threonine-protein phosphatase 2A regulatory subunit B56-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.53  E-value=3  Score=35.80  Aligned_cols=191  Identities=9%  Similarity=0.028  Sum_probs=111.1

Q ss_pred             hhhchHHHHHHhhccCChhHHHHHHHHHHHhccCCchhHHHHHHhCCHHHHHHhcCC-CCcchHhHHHHHHhHhhcCCch
Q 011328          197 QTRPALPALERLIHSNDDEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLRH-PSPSVLIPALRTVGNIVTGDDM  275 (488)
Q Consensus       197 ~~~~~~~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~  275 (488)
                      .....+..++.++.++|+.-|.....++..+-........ .+...+-..+.+.... .........+.+++.+..+...
T Consensus       130 id~~Fi~~Ll~lf~S~D~rER~~lk~~l~~iy~kf~~~R~-~Ir~~i~~if~~fi~e~~~~~gI~elLeil~sii~gf~~  208 (343)
T d2jaka1         130 IDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRA-YIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFAL  208 (343)
T ss_dssp             SCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCGGGHH-HHHHHHHHHHHHHHTSSCCCSCHHHHHHHHHHHHHTCCS
T ss_pred             CCHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhhhhHHH-HHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHhccC
Confidence            3356788899999999999999999999888755555544 4444555666666543 4455677888888888775332


Q ss_pred             hhHHHhhCCChHHHHHHhcccchhhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhc
Q 011328          276 QTQCIINHQALPCLLDLLTQNYKKSIKKEACWTISNITAGNVNQIQAIIEAGIIGPLVNLLLNAEFEIKKEAAWAISNAT  355 (488)
Q Consensus       276 ~~~~~~~~~~~~~L~~lL~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~aL~~l~  355 (488)
                      -.+.-...-....++.+.+...-...-..-..++..+...++.....++     ..+++.--..+..=...-+.-|..++
T Consensus       209 plkeeh~~f~~~vllPLhk~~~~~~y~~qL~~~v~~f~~kDp~l~~~~i-----~~llk~WP~t~~~Kev~FL~el~~il  283 (343)
T d2jaka1         209 PLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPVV-----MALLKYWPKTHSPKEVMFLNELEEIL  283 (343)
T ss_dssp             SCCHHHHHHHHHTTGGGGTSGGGGGTHHHHHHHHHHHHHHCGGGHHHHH-----HHHHHSSCSSCCTTHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHhcCchhHHHHH-----HHHHHhCCCCCchHHHHHHHHHHHHH
Confidence            1111111112344555555553344444555556655554444322222     12222111123332333455556666


Q ss_pred             cCCCHHHHHHHHHCCChHHHHhhcCCCCHHHHHHHHHHH
Q 011328          356 SGGSNEQIKFLVSQGCIKPLCDLLNCPDPRIVTVCLEGL  394 (488)
Q Consensus       356 ~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~al~~L  394 (488)
                      ....+.....+.. .+...+.+++++++-+|.++|+...
T Consensus       284 ~~~~~~~f~~~~~-~lf~~la~ci~S~h~qVAErAl~~w  321 (343)
T d2jaka1         284 DVIEPSEFVKIME-PLFRQLAKCVSSPHFQVAERALYYW  321 (343)
T ss_dssp             HTCCHHHHHHHHH-HHHHHHHHHHTCSSHHHHHHHHGGG
T ss_pred             HhCCHHHHHHHHH-HHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            5555555444332 4778888889999999888877554

>d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.74  E-value=1.4  Score=32.72  Aligned_cols=74  Identities=11%  Similarity=-0.009  Sum_probs=58.7

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCCccHHHHHHcCCHHHHHHhhcCC-----CChhHHHHHHHHHHHhcC
Q 011328           30 ESLPAMVAGVWSDDRNIQLDATTQFRKLLSIERSPPINEVIQSGVVPRFIEFLSRD-----DFPQLQFEAAWALTNIAS  103 (488)
Q Consensus        30 ~~i~~l~~~L~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~lL~~~-----~~~~v~~~a~~~L~~l~~  103 (488)
                      ..+..|.+.|++.++.+++.|+..|-.+..+-+......+...+++..|++++...     ....|+..++..+...+.
T Consensus        45 ~a~r~l~krl~~~~~~~~l~aL~LLe~~vkNCG~~f~~evas~~Fl~~L~kli~~k~~~~~~~~~Vk~kil~li~~W~~  123 (145)
T d1ujka_          45 LATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV  123 (145)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHHHHHTSCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHhhccCCCCCcHHHHHHHHHHHHHHHH
Confidence            55777888899999999999999999988765455567777888999999998631     226899888888877655

>d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.28  E-value=2.7  Score=30.98  Aligned_cols=75  Identities=15%  Similarity=0.137  Sum_probs=57.7

Q ss_pred             ChHHHHhhcCCCCHHHHHHHHHHHHHHHHhhhhhhccCCCCccchHHHHHHhhccHHHHHHhhc------CCCHHHHHHH
Q 011328          371 CIKPLCDLLNCPDPRIVTVCLEGLENILKAGEAEKNMGNTGGVNLFAQAIDDAEGLEKIENLQS------HDNTEIYEKA  444 (488)
Q Consensus       371 ~i~~L~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~l~~------~~~~~v~~~a  444 (488)
                      ++..|..-+.++++.++..++..|..+++.+...           |...+.+...++.|.++..      ..+++|+.++
T Consensus        39 a~ral~krl~~~n~~~~l~aL~LLe~~vkNcG~~-----------fh~evask~Fl~~l~~li~~k~~~~~~~~~Vk~ki  107 (143)
T d1mhqa_          39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGEK-----------FHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRV  107 (143)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHH-----------HHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHH-----------HHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHH
Confidence            4666777778899999999999999998875432           6677777778888888865      3578899999


Q ss_pred             HHHHHHhcCCCC
Q 011328          445 VKILETYWVEED  456 (488)
Q Consensus       445 ~~~l~~~~~~~~  456 (488)
                      ..++......-.
T Consensus       108 l~li~~Wa~~f~  119 (143)
T d1mhqa_         108 IEILFSWTVWFP  119 (143)
T ss_dssp             HHHHHHHHHHCT
T ss_pred             HHHHHHHHHHcC
Confidence            999976655443