Citrus Sinensis ID: 011330

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------49

MKETCVSFSSSSRYSAKISQVLHLDNAGIGIRRGRRSIVAASPPTEDAVVVTEPLTKEDLVGYLASGCKPKEKWRIGTEHEKFGFEFGTLHPMKYEQIAELLNSIAERFDWEKVMEGDYIIGLKQGKQSISLEPGGQFELSGAPLETLHQTCAEVNSHLYQVKAVAEEMGIGFLGIGFQPKWGLKDIPVMPKGRYEIMRNYMPKVGSLGLDMMFRTCTVQVNLDFSSEADMIRKFRAGLALQPIATALFANSPFTEGKPNGYLSMRSHIWTDTDNNRAGMLPFVFDDSFGFEQYVDYALDVPMYFVYRKKKYIDCAGMSFRDFLAGKLPCLPGELPTLNDWENHLTTIFPEVRLKRYLEMRGADGGPWRRLCALPAFWVGLLYDEDSLQNVLDMTADWTTGERQMLRNKVPKTGLKTPFRDGLLRHVAQDVLKLSKDGLERRGFKETGFLNEVAEVVRTGVTPAEKLLDMYHGKWRESVDPVFEELLY

ccccccccccccccccccccEEccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccEEEEEEcccccccccccccHHHHHHHHHHHHHHccccccccccccccccccccEEEEccccEEEEEccccccHHHHHHHHHHHHHHHHHHHHHcccEEEEcccccccccccccccccHHHHHHHHHHHHHccHHHHHHccccEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHcccccccccccccccccHHHHHHHHHHccccEEEEccccccccccccHHHHHHccccccccccccHHHHHHHHccccccccccccEEEcccccccHHHHcccHHHHHHHHccHHHHHHHHHHcccccHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccHHHHHHHHHcccccccHHHHHHHHcc

cccEEEEEEccccccccccccccccHcccccccccEEEEEccccccccccccccccHHHHHHHHHcccccHHHcEEccccccccEEccccccccHHHHHHHHHHHHHHcccccEcccccEEEEEccccEEEEccccEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHcccEEcccccccccHHHccccccHHHHHHHHHcccccccccHHHHcEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHcccccccccccccEEEcccccHHHHHHHHccccEEEEEEcccEEEcccccHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHHHcccccccHHHHcccHHHHHHHcccHHHHHHHHHHHccccHHHHHHHHHHccHHccccccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccHHHHHHHHHcccccccccHHHHHHcc

mketcvsfssssrysakISQVLHldnagigirrgrrsivaaspptedavvvtepltkeDLVGYlasgckpkekwrigtehekfgfefgtlhpmKYEQIAELLNSIAERfdwekvmeGDYIIglkqgkqsislepggqfelsgapletLHQTCAEVNSHLYQVKAVAEEMGIgflgigfqpkwglkdipvmpkgRYEIMRNYmpkvgslgLDMMFRTCTVQVNLDFSSEADMIRKFRAGLALQPIATalfanspftegkpngylsmrshiwtdtdnnragmlpfvfddsfgfeqYVDYALDVPMYFVYRKKkyidcagmsFRDFlagklpclpgelptlndwenhlttifpeVRLKRYLEmrgadggpwrrlcaLPAFWVGLLYDEDSLQNVLDMTadwttgerqmlrnkvpktglktpfrdgLLRHVAQDVLKLSKdglerrgfketgfLNEVAEVVRtgvtpaekLLDMyhgkwresvdPVFEELLY

mketcvsfssssrysakisqvlhldnagigirrgrrsivaaspptedavvvtepltkedlvgylasgckpkekwriGTEHEKFGFEFGTLHPMKYEQIAELLNSIAERFDWEKVMEGDYIIGLKQGKQSISLEPGGQFELSGAPLETLHQTCAEVNSHLYQVKAVAEEMGIGFLgigfqpkwglKDIPVMPKGRYEIMRNYMPKVGSLGLDMMFRTCTVQVNLDFSSEADMIRKFRAGLALQPIATALFANSPFTEGKPNGYLSMRSHIWTDTDNNRAGMLPFVFDDSFGFEQYVDYALDVPMYFVYRKKKYIDCAGMSFRDFLAGKLPCLPGELPTLNDWENHLTTIFPEVRLKRYLEMRgadggpwrRLCALPAFWVGLLYDEDSLQNVLDMTAdwttgerqmlrnkvpktglktpfrdgllRHVAQDVLKlskdglerrgfketgflnevaevvrtgvtpaeklldmyhgkwresvdpVFEELLY

MKETCVSFSSSSRYSAKISQVLHLDNAgigirrgrrsiVAASPPTEDAVVVTEPLTKEDLVGYLASGCKPKEKWRIGTEHEKFGFEFGTLHPMKYEQIAELLNSIAERFDWEKVMEGDYIIGLKQGKQSISLEPGGQFELSGAPLETLHQTCAEVNSHLYQVKAVAEEMGIGFLGIGFQPKWGLKDIPVMPKGRYEIMRNYMPKVGSLGLDMMFRTCTVQVNLDFSSEADMIRKFRAGLALQPIATALFANSPFTEGKPNGYLSMRSHIWTDTDNNRAGMLPFVFDDSFGFEQYVDYALDVPMYFVYRKKKYIDCAGMSFRDFLAGKLPCLPGELPTLNDWENHLTTIFPEVRLKRYLEMRGADGGPWRRLCALPAFWVGLLYDEDSLQNVLDMTADWTTGERQMLRNKVPKTGLKTPFRDGLLRHVAQDVLKLSKDGLERRGFKETGFLNEVAEVVRTGVTPAEKLLDMYHGKWRESVDPVFEELLY

*****************ISQVLHLDNAGIGIRRGRRSIVAA***TEDAVVVTEPLTKEDLVGYLASGCKPKEKWRIGTEHEKFGFEFGTLHPMKYEQIAELLNSIAERFDWEKVMEGDYIIGLKQGKQSISL**GGQFELSGAPLETLHQTCAEVNSHLYQVKAVAEEMGIGFLGIGFQPKWGLKDIPVMPKGRYEIMRNYMPKVGSLGLDMMFRTCTVQVNLDFSSEADMIRKFRAGLALQPIATALFANSPFTEGKPNGYLSMRSHIWTDTDNNRAGMLPFVFDDSFGFEQYVDYALDVPMYFVYRKKKYIDCAGMSFRDFLAGKLPCLPGELPTLNDWENHLTTIFPEVRLKRYLEMRGADGGPWRRLCALPAFWVGLLYDEDSLQNVLDMTADWTTGERQMLRNKVPKTGLKTPFRDGLLRHVAQDVLKLSKDGLERRGFKETGFLNEVAEVVRTGVTPAEKLLDMYHGKWRESVDPVF*****

*******************************************************TKEDLVGYLASGCKPKEKWRIGTEHEKFGFEFGTLHPMKYEQIAELLNSIAERFDWEKVMEGDYIIGLKQGKQSISLEPGGQFELSGAPLETLHQTCAEVNSHLYQVKAVAEEMGIGFLGIGFQPKWGLKDIPVMPKGRYEIMRNYMPKVGSLGLDMMFRTCTVQVNLDFSSEADMIRKFRAGLALQPIATALFANSPFTEGKPNGYLSMRSHIWTDTDNNRAGMLPFVFDDSFGFEQYVDYALDVPMYFVYRKKKYIDCAGMSFRDFLAGKLPCLPGELPTLNDWENHLTTIFPEVRLKRYLEMRGADGGPWRRLCALPAFWVGLLYDEDSLQNVLDMTADWTTGERQMLRNKVPKTGLKTPFRDGLLRHVAQDVLKLSKDGLERRGFKETGFLNEVAEVVRTGVTPAEKLLDMYHGKWRESVDPVFEELLY

**************SAKISQVLHLDNAGIGIRRGRRSIVAASPPTEDAVVVTEPLTKEDLVGYLASGCKPKEKWRIGTEHEKFGFEFGTLHPMKYEQIAELLNSIAERFDWEKVMEGDYIIGLKQGKQSISLEPGGQFELSGAPLETLHQTCAEVNSHLYQVKAVAEEMGIGFLGIGFQPKWGLKDIPVMPKGRYEIMRNYMPKVGSLGLDMMFRTCTVQVNLDFSSEADMIRKFRAGLALQPIATALFANSPFTEGKPNGYLSMRSHIWTDTDNNRAGMLPFVFDDSFGFEQYVDYALDVPMYFVYRKKKYIDCAGMSFRDFLAGKLPCLPGELPTLNDWENHLTTIFPEVRLKRYLEMRGADGGPWRRLCALPAFWVGLLYDEDSLQNVLDMTADWTTGERQMLRNKVPKTGLKTPFRDGLLRHVAQDVLKLSKDGLERRGFKETGFLNEVAEVVRTGVTPAEKLLDMYHGKWRESVDPVFEELLY

*KETCVSFSSSSRYSAKIS***********IRRGRRSIVAASPPTEDAVVVTEPLTKEDLVGYLASGCKPKEKWRIGTEHEKFGFEFGTLHPMKYEQIAELLNSIAERFDWEKVMEGDYIIGLKQGKQSISLEPGGQFELSGAPLETLHQTCAEVNSHLYQVKAVAEEMGIGFLGIGFQPKWGLKDIPVMPKGRYEIMRNYMPKVGSLGLDMMFRTCTVQVNLDFSSEADMIRKFRAGLALQPIATALFANSPFTEGKPNGYLSMRSHIWTDTDNNRAGMLPFVFDDSFGFEQYVDYALDVPMYFVYRKKKYIDCAGMSFRDFLAGKLPCLPGELPTLNDWENHLTTIFPEVRLKRYLEMRGADGGPWRRLCALPAFWVGLLYDEDSLQNVLDMTADWTTGERQMLRNKVPKTGLKTPFRDGLLRHVAQDVLKLSKDGLERRGFKETGFLNEVAEVVRTGVTPAEKLLDMYHGKWRESVDPVFEELLY

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SSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		488	2.2.26 [Sep-21-2011]
O22493		523	Glutamate--cysteine ligas	N/A	no	1.0	0.933	0.872	0.0
Q1W2L8		522	Glutamate--cysteine ligas	N/A	no	0.997	0.932	0.887	0.0
Q9ZNX6		508	Glutamate--cysteine ligas	N/A	no	0.985	0.946	0.838	0.0
O23736		514	Glutamate--cysteine ligas	N/A	no	0.981	0.931	0.840	0.0
P46309		522	Glutamate--cysteine ligas	yes	no	0.977	0.913	0.847	0.0
Q688Q9		492	Glutamate--cysteine ligas	yes	no	0.934	0.926	0.824	0.0
Q8GU95		492	Glutamate--cysteine ligas	N/A	no	0.934	0.926	0.826	0.0
Q6Z3A3		496	Glutamate--cysteine ligas	yes	no	0.915	0.901	0.829	0.0
A2YL07		496	Glutamate--cysteine ligas	N/A	no	0.915	0.901	0.829	0.0
O69672		432	Glutamate--cysteine ligas	yes	no	0.670	0.756	0.279	1e-24

>sp\|O22493\|GSH1_SOLLC Glutamate--cysteine ligase, chloroplastic OS=Solanum lycopersicum GN=GSH1 PE=2 SV=1	Back alignment and function desciption

 Score =  895 bits (2314), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 426/488 (87%), Positives = 454/488 (93%)

Query: 1   MKETCVSFSSSSRYSAKISQVLHLDNAGIGIRRGRRSIVAASPPTEDAVVVTEPLTKEDL 60
           M+E C     SSR +++  Q  +L++ G+G RRG  +IVAASPPTEDAVV  EPLTKEDL
Sbjct: 36  MREICFGVDISSRNASRRVQGNYLNHIGVGSRRGDLTIVAASPPTEDAVVAAEPLTKEDL 95

Query: 61  VGYLASGCKPKEKWRIGTEHEKFGFEFGTLHPMKYEQIAELLNSIAERFDWEKVMEGDYI 120
           VGYLASGCK KEKWRIGTEHEKFGFEFGTL PMKY+QIA+LLN IAERFDWEKVMEGD I
Sbjct: 96  VGYLASGCKSKEKWRIGTEHEKFGFEFGTLRPMKYDQIADLLNGIAERFDWEKVMEGDKI 155

Query: 121 IGLKQGKQSISLEPGGQFELSGAPLETLHQTCAEVNSHLYQVKAVAEEMGIGFLGIGFQP 180
           IGLKQGKQSISLEPGGQFELSGAPLETLHQTCAEVNSHLYQVKAVAEEMGIGFLG GFQP
Sbjct: 156 IGLKQGKQSISLEPGGQFELSGAPLETLHQTCAEVNSHLYQVKAVAEEMGIGFLGTGFQP 215

Query: 181 KWGLKDIPVMPKGRYEIMRNYMPKVGSLGLDMMFRTCTVQVNLDFSSEADMIRKFRAGLA 240
           KWGLKDIP+MPKGRYEI+RNYMPKVGSLGLDMMFRTCTVQVNLDFSSEADMIRKFRAGLA
Sbjct: 216 KWGLKDIPIMPKGRYEIIRNYMPKVGSLGLDMMFRTCTVQVNLDFSSEADMIRKFRAGLA 275

Query: 241 LQPIATALFANSPFTEGKPNGYLSMRSHIWTDTDNNRAGMLPFVFDDSFGFEQYVDYALD 300
           LQPIATALFANSPFTEGKPNGYLS RSHIWTDTDNNRAGMLPFVFDDSFGFEQYVDYALD
Sbjct: 276 LQPIATALFANSPFTEGKPNGYLSKRSHIWTDTDNNRAGMLPFVFDDSFGFEQYVDYALD 335

Query: 301 VPMYFVYRKKKYIDCAGMSFRDFLAGKLPCLPGELPTLNDWENHLTTIFPEVRLKRYLEM 360
           VPMYFVYRKKKY+DC G+SFRDF+ GKLP +PGE PTLNDWENHLTTIFPEVRLKRYLEM
Sbjct: 336 VPMYFVYRKKKYVDCTGLSFRDFMNGKLPPIPGEYPTLNDWENHLTTIFPEVRLKRYLEM 395

Query: 361 RGADGGPWRRLCALPAFWVGLLYDEDSLQNVLDMTADWTTGERQMLRNKVPKTGLKTPFR 420
           RGADGGPWRRLCALPAFWVG+LYDE SLQ+VLDMT DWT  ER MLRNKVPK+GLKTPFR
Sbjct: 396 RGADGGPWRRLCALPAFWVGILYDEGSLQSVLDMTFDWTAEERDMLRNKVPKSGLKTPFR 455

Query: 421 DGLLRHVAQDVLKLSKDGLERRGFKETGFLNEVAEVVRTGVTPAEKLLDMYHGKWRESVD 480
           DGLL HVAQDV+KL+K+GLERRGFKETGFLNEVAEVV+TGVTPAEKLL++YHGKW +SVD
Sbjct: 456 DGLLMHVAQDVVKLAKEGLERRGFKETGFLNEVAEVVKTGVTPAEKLLELYHGKWGQSVD 515

Query: 481 PVFEELLY 488
           P+FEELLY
Sbjct: 516 PIFEELLY 523

Solanum lycopersicum (taxid: 4081)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: 2

>sp\|Q1W2L8\|GSH1_TOBAC Glutamate--cysteine ligase, chloroplastic OS=Nicotiana tabacum GN=GSH1 PE=2 SV=2	Back alignment and function description

>sp\|Q9ZNX6\|GSH1_MEDTR Glutamate--cysteine ligase, chloroplastic OS=Medicago truncatula GN=GSH1 PE=2 SV=1	Back alignment and function description

>sp\|O23736\|GSH1_BRAJU Glutamate--cysteine ligase, chloroplastic OS=Brassica juncea GN=GSH1 PE=1 SV=1	Back alignment and function description

>sp\|P46309\|GSH1_ARATH Glutamate--cysteine ligase, chloroplastic OS=Arabidopsis thaliana GN=GSH1 PE=1 SV=2	Back alignment and function description

>sp\|Q688Q9\|GSH1A_ORYSJ Glutamate--cysteine ligase A, chloroplastic OS=Oryza sativa subsp. japonica GN=GSH1-1 PE=2 SV=1	Back alignment and function description

>sp\|Q8GU95\|GSH1A_ORYSI Glutamate--cysteine ligase A, chloroplastic OS=Oryza sativa subsp. indica GN=GSH1-1 PE=2 SV=2	Back alignment and function description

>sp\|Q6Z3A3\|GSH1B_ORYSJ Glutamate--cysteine ligase B, chloroplastic OS=Oryza sativa subsp. japonica GN=GSH1-2 PE=3 SV=1	Back alignment and function description

>sp\|A2YL07\|GSH1B_ORYSI Glutamate--cysteine ligase B, chloroplastic OS=Oryza sativa subsp. indica GN=GSH1-2 PE=3 SV=2	Back alignment and function description

>sp\|O69672\|GSHA_MYCTU Glutamate--cysteine ligase GshA OS=Mycobacterium tuberculosis GN=gshA PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		488
443680320		511	gamma-glutamylcysteine synthetase [Dimoc	0.975	0.931	0.899	0.0
255537467		526	Glutamate--cysteine ligase, chloroplast	1.0	0.927	0.891	0.0
224053899		526	predicted protein [Populus trichocarpa]	1.0	0.927	0.870	0.0
224074923		526	predicted protein [Populus trichocarpa]	1.0	0.927	0.868	0.0
233142218		523	GSH1 [Solanum lycopersicum]	1.0	0.933	0.875	0.0
350536811		523	glutamate--cysteine ligase, chloroplasti	1.0	0.933	0.872	0.0
118489650		526	unknown [Populus trichocarpa x Populus d	1.0	0.927	0.864	0.0
401466660		518	GCS [Cestrum nocturnum]	1.0	0.942	0.877	0.0
122194121		522	RecName: Full=Glutamate--cysteine ligase	0.997	0.932	0.887	0.0
50058088		523	gamma-glutamylcysteine synthetase [Zinni	0.977	0.912	0.878	0.0

>gi\|443680320\|gb\|AFF18844.2\| gamma-glutamylcysteine synthetase [Dimocarpus longan]	Back alignment and taxonomy information

 Score =  916 bits (2367), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 439/488 (89%), Positives = 456/488 (93%), Gaps = 12/488 (2%)

Query: 1   MKETCVSFSSSSRYSAKISQVLHLDNAGIGIRRGRRSIVAASPPTEDAVVVTEPLTKEDL 60
           +KE+CVSFSS S YS K            G RRG R+IVAASPPT+DAV+  EPLTKEDL
Sbjct: 36  VKESCVSFSSLSCYSTK------------GSRRGYRAIVAASPPTDDAVIAAEPLTKEDL 83

Query: 61  VGYLASGCKPKEKWRIGTEHEKFGFEFGTLHPMKYEQIAELLNSIAERFDWEKVMEGDYI 120
           VGYLASGCKP+EKWRIGTEHEKFGFE GTL PMKYEQIAELLNSIAERFDWEK+ME + I
Sbjct: 84  VGYLASGCKPREKWRIGTEHEKFGFEIGTLRPMKYEQIAELLNSIAERFDWEKIMEDNNI 143

Query: 121 IGLKQGKQSISLEPGGQFELSGAPLETLHQTCAEVNSHLYQVKAVAEEMGIGFLGIGFQP 180
           IGLKQGKQSISLEPGGQFELSGAPLETLHQTCAEVNSHLYQVKAVAEEMGIGFLGIGFQP
Sbjct: 144 IGLKQGKQSISLEPGGQFELSGAPLETLHQTCAEVNSHLYQVKAVAEEMGIGFLGIGFQP 203

Query: 181 KWGLKDIPVMPKGRYEIMRNYMPKVGSLGLDMMFRTCTVQVNLDFSSEADMIRKFRAGLA 240
           KWG+KDIPVMPKGRYEIM+NYMPKVGSLGLDMMFRTCTVQVNLDFSSEADMIRKFRAGLA
Sbjct: 204 KWGIKDIPVMPKGRYEIMKNYMPKVGSLGLDMMFRTCTVQVNLDFSSEADMIRKFRAGLA 263

Query: 241 LQPIATALFANSPFTEGKPNGYLSMRSHIWTDTDNNRAGMLPFVFDDSFGFEQYVDYALD 300
           LQPIATALFANSPFTEGKPNGYLSMRS IWTDTDNNR GMLPFVFDDSFGFEQYVDYALD
Sbjct: 264 LQPIATALFANSPFTEGKPNGYLSMRSQIWTDTDNNRTGMLPFVFDDSFGFEQYVDYALD 323

Query: 301 VPMYFVYRKKKYIDCAGMSFRDFLAGKLPCLPGELPTLNDWENHLTTIFPEVRLKRYLEM 360
           VPMYFVYRKKKYIDC GMSFRDFL GKLPCLPGELPTLNDWENHLTTIFPEVRLKRYLEM
Sbjct: 324 VPMYFVYRKKKYIDCTGMSFRDFLVGKLPCLPGELPTLNDWENHLTTIFPEVRLKRYLEM 383

Query: 361 RGADGGPWRRLCALPAFWVGLLYDEDSLQNVLDMTADWTTGERQMLRNKVPKTGLKTPFR 420
           RGADGGPWRRLCALPAFWVGLLYDE SLQN LD+TADWT+ ERQMLRNKVPKTGLKTPFR
Sbjct: 384 RGADGGPWRRLCALPAFWVGLLYDEVSLQNALDLTADWTSEERQMLRNKVPKTGLKTPFR 443

Query: 421 DGLLRHVAQDVLKLSKDGLERRGFKETGFLNEVAEVVRTGVTPAEKLLDMYHGKWRESVD 480
           DGLLRHVAQD+LKL+KDGLERRGFKE+GFLN VAEVVRTGVTPAEKLL+MYHGKW +SVD
Sbjct: 444 DGLLRHVAQDILKLAKDGLERRGFKESGFLNAVAEVVRTGVTPAEKLLEMYHGKWGQSVD 503

Query: 481 PVFEELLY 488
           PVFEELLY
Sbjct: 504 PVFEELLY 511

Source: Dimocarpus longan

Species: Dimocarpus longan

Genus: Dimocarpus

Family: Sapindaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|255537467\|ref\|XP_002509800.1\| Glutamate--cysteine ligase, chloroplast precursor, putative [Ricinus communis] gi\|223549699\|gb\|EEF51187.1\| Glutamate--cysteine ligase, chloroplast precursor, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|224053899\|ref\|XP_002298035.1\| predicted protein [Populus trichocarpa] gi\|222845293\|gb\|EEE82840.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|224074923\|ref\|XP_002304493.1\| predicted protein [Populus trichocarpa] gi\|222841925\|gb\|EEE79472.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|233142218\|gb\|ACQ91100.1\| GSH1 [Solanum lycopersicum]	Back alignment and taxonomy information

>gi\|350536811\|ref\|NP_001234010.1\| glutamate--cysteine ligase, chloroplastic [Solanum lycopersicum] gi\|3913791\|sp\|O22493.1\|GSH1_SOLLC RecName: Full=Glutamate--cysteine ligase, chloroplastic; AltName: Full=Gamma-ECS; Short=GCS; AltName: Full=Gamma-glutamylcysteine synthetase; Flags: Precursor gi\|2407615\|gb\|AAB71230.1\| gamma-glutamylcysteine synthetase [Solanum lycopersicum]	Back alignment and taxonomy information

>gi\|118489650\|gb\|ABK96626.1\| unknown [Populus trichocarpa x Populus deltoides]	Back alignment and taxonomy information

>gi\|401466660\|gb\|AFP93564.1\| GCS [Cestrum nocturnum]	Back alignment and taxonomy information

>gi\|122194121\|sp\|Q1W2L8.2\|GSH1_TOBAC RecName: Full=Glutamate--cysteine ligase, chloroplastic; AltName: Full=Gamma-ECS; Short=GCS; AltName: Full=Gamma-glutamylcysteine synthetase; Flags: Precursor gi\|111380512\|gb\|ABD98695.2\| chloroplast gamma-glutamylcysteine synthetase [Nicotiana tabacum]	Back alignment and taxonomy information

>gi\|50058088\|dbj\|BAD27390.1\| gamma-glutamylcysteine synthetase [Zinnia elegans]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		488
TAIR\|locus:2127173		522	GSH1 "glutamate-cysteine ligas	0.989	0.925	0.834	1.5e-223
TIGR_CMR\|SPO_3626		456	SPO_3626 "glutamate--cysteine	0.891	0.953	0.541	1.6e-132
UNIPROTKB\|O69672		432	gshA "Glutamate--cysteine liga	0.596	0.673	0.290	2.4e-22
UNIPROTKB\|A0R5N1		423	gshA "Glutamate--cysteine liga	0.536	0.619	0.305	4.5e-21

TAIR\|locus:2127173 GSH1 "glutamate-cysteine ligase" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 2158 (764.7 bits), Expect = 1.5e-223, P = 1.5e-223
 Identities = 407/488 (83%), Positives = 438/488 (89%)

Query:     1 MKETCVSFSSSSRYSAKISQVLHLDNAXXXXXXXXXXXVAASPPTEDAVVVTEPLTKEDL 60
             MKE   +F SS  YS  +S    L ++           VAASPPTE+AVV TEPLT+EDL
Sbjct:    40 MKE---AFGSS--YSRSLSTKSMLLHSVKRSKRGHQLIVAASPPTEEAVVATEPLTREDL 94

Query:    61 VGYLASGCKPKEKWRIGTEHEKFGFEFGTLHPMKYEQIAELLNSIAERFDWEKVMEGDYI 120
             + YLASGCK K+K+RIGTEHEKFGFE  TL PMKY+QIAELLN IAERF+WEKVMEGD I
Sbjct:    95 IAYLASGCKTKDKYRIGTEHEKFGFEVNTLRPMKYDQIAELLNGIAERFEWEKVMEGDKI 154

Query:   121 IGLKQGKQSISLEPGGQFELSGAPLETLHQTCAEVNSHLYQVKAVAEEMGIGFLGIGFQP 180
             IGLKQGKQSISLEPGGQFELSGAPLETLHQTCAEVNSHLYQVKAVAEEMGIGFLGIGFQP
Sbjct:   155 IGLKQGKQSISLEPGGQFELSGAPLETLHQTCAEVNSHLYQVKAVAEEMGIGFLGIGFQP 214

Query:   181 KWGLKDIPVMPKGRYEIMRNYMPKVGSLGLDMMFRTCTVQVNLDFSSEADMIRKFRAGLA 240
             KW  +DIP+MPKGRY+IMRNYMPKVG+LGLDMM RTCTVQVNLDFSSEADMIRKFRAGLA
Sbjct:   215 KWRREDIPIMPKGRYDIMRNYMPKVGTLGLDMMLRTCTVQVNLDFSSEADMIRKFRAGLA 274

Query:   241 LQPIATALFANSPFTEGKPNGYLSMRSHIWTDTDNNRAGMLPFVFDDSFGFEQYVDYALD 300
             LQPIATALFANSPFTEGKPNG+LSMRSHIWTDTD +R GMLPFVFDDSFGFEQYVDYALD
Sbjct:   275 LQPIATALFANSPFTEGKPNGFLSMRSHIWTDTDKDRTGMLPFVFDDSFGFEQYVDYALD 334

Query:   301 VPMYFVYRKKKYIDCAGMSFRDFLAGKLPCLPGELPTLNDWENHLTTIFPEVRLKRYLEM 360
             VPMYF YRK KYIDC GM+FR FLAGKLPCLPGELP+ NDWENHLTTIFPEVRLKRYLEM
Sbjct:   335 VPMYFAYRKNKYIDCTGMTFRQFLAGKLPCLPGELPSYNDWENHLTTIFPEVRLKRYLEM 394

Query:   361 RGADGGPWRRLCALPAFWVGLLYDEDSLQNVLDMTADWTTGERQMLRNKVPKTGLKTPFR 420
             RGADGGPWRRLCALPAFWVGLLYD+DSLQ +LD+TADWT  ER+MLRNKVP TGLKTPFR
Sbjct:   395 RGADGGPWRRLCALPAFWVGLLYDDDSLQAILDLTADWTPAEREMLRNKVPVTGLKTPFR 454

Query:   421 DGLLRHVAQDVLKLSKDGLERRGFKETGFLNEVAEVVRTGVTPAEKLLDMYHGKWRESVD 480
             DGLL+HVA+DVLKL+KDGLERRG+KE GFLN V EVVRTGVTPAEKLL+MY+G+W +SVD
Sbjct:   455 DGLLKHVAEDVLKLAKDGLERRGYKEAGFLNAVDEVVRTGVTPAEKLLEMYNGEWGQSVD 514

Query:   481 PVFEELLY 488
             PVFEELLY
Sbjct:   515 PVFEELLY 522

GO:0004357 "glutamate-cysteine ligase activity" evidence=IEA;IMP;IDA

GO:0006750 "glutathione biosynthetic process" evidence=IEA;IMP;IDA;TAS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009908 "flower development" evidence=IMP

GO:0009408 "response to heat" evidence=IMP

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0010193 "response to ozone" evidence=IEP;RCA

GO:0046686 "response to cadmium ion" evidence=IEP;IMP;RCA

GO:0050832 "defense response to fungus" evidence=IMP

GO:0002213 "defense response to insect" evidence=IMP

GO:0019761 "glucosinolate biosynthetic process" evidence=IMP

GO:0042742 "defense response to bacterium" evidence=IMP

GO:0052544 "defense response by callose deposition in cell wall" evidence=IMP

GO:0006007 "glucose catabolic process" evidence=RCA

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0006096 "glycolysis" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

GO:0030244 "cellulose biosynthetic process" evidence=RCA

GO:0009536 "plastid" evidence=IDA

GO:0009700 "indole phytoalexin biosynthetic process" evidence=IMP

GO:0009816 "defense response to bacterium, incompatible interaction" evidence=IMP

TIGR_CMR\|SPO_3626 SPO_3626 "glutamate--cysteine ligase" [Ruegeria pomeroyi DSS-3 (taxid:246200)]	Back alignment and assigned GO terms

UNIPROTKB\|O69672 gshA "Glutamate--cysteine ligase GshA" [Mycobacterium tuberculosis (taxid:1773)]	Back alignment and assigned GO terms

UNIPROTKB\|A0R5N1 gshA "Glutamate--cysteine ligase GshA" [Mycobacterium smegmatis str. MC2 155 (taxid:246196)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O22493	GSH1_SOLLC	6, ., 3, ., 2, ., 2	0.8729	1.0	0.9330	N/A	no
Q9ZNX6	GSH1_MEDTR	6, ., 3, ., 2, ., 2	0.8387	0.9856	0.9468	N/A	no
Q688Q9	GSH1A_ORYSJ	6, ., 3, ., 2, ., 2	0.8245	0.9344	0.9268	yes	no
A2YL07	GSH1B_ORYSI	6, ., 3, ., 2, ., 2	0.8299	0.9159	0.9012	N/A	no
Q1W2L8	GSH1_TOBAC	6, ., 3, ., 2, ., 2	0.8872	0.9979	0.9329	N/A	no
Q8GU95	GSH1A_ORYSI	6, ., 3, ., 2, ., 2	0.8267	0.9344	0.9268	N/A	no
Q6Z3A3	GSH1B_ORYSJ	6, ., 3, ., 2, ., 2	0.8299	0.9159	0.9012	yes	no
O23736	GSH1_BRAJU	6, ., 3, ., 2, ., 2	0.8401	0.9815	0.9319	N/A	no
P46309	GSH1_ARATH	6, ., 3, ., 2, ., 2	0.8479	0.9774	0.9137	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.2.2	0.994
3rd Layer	6.3.2	0.998

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		488
PLN02611		482	PLN02611, PLN02611, glutamate--cysteine ligase	0.0
TIGR01436		446	TIGR01436, glu_cys_lig_pln, glutamate--cysteine li	0.0
COG3572		456	COG3572, GshA, Gamma-glutamylcysteine synthetase [	0.0
pfam04107		289	pfam04107, GCS2, Glutamate-cysteine ligase family	8e-98
TIGR03444		390	TIGR03444, EgtA_Cys_ligase, ergothioneine biosynth	5e-36
PRK13517		373	PRK13517, PRK13517, carboxylate-amine ligase; Prov	1e-07
TIGR02050		287	TIGR02050, gshA_cyan_rel, carboxylate-amine ligase	3e-07
COG2170		369	COG2170, COG2170, Uncharacterized conserved protei	1e-05
PRK13515		371	PRK13515, PRK13515, carboxylate-amine ligase; Prov	0.002

>gnl\|CDD\|178221 PLN02611, PLN02611, glutamate--cysteine ligase	Back alignment and domain information

 Score =  998 bits (2581), Expect = 0.0
 Identities = 397/478 (83%), Positives = 426/478 (89%)

Query: 11  SSRYSAKISQVLHLDNAGIGIRRGRRSIVAASPPTEDAVVVTEPLTKEDLVGYLASGCKP 70
           S+   A+       D+     RRGR  IVAASPPTE+AVV TEPLTKEDLV YLASGCKP
Sbjct: 5   SAAGRARHVSAPSSDSRRRTTRRGRSVIVAASPPTEEAVVATEPLTKEDLVAYLASGCKP 64

Query: 71  KEKWRIGTEHEKFGFEFGTLHPMKYEQIAELLNSIAERFDWEKVMEGDYIIGLKQGKQSI 130
           KEKWRIGTEHEKFGFE  TL PMKY+QIA+LL  +AERF WEK+MEGD IIGLKQ  QS+
Sbjct: 65  KEKWRIGTEHEKFGFELATLRPMKYDQIAQLLEGLAERFGWEKIMEGDNIIGLKQDGQSV 124

Query: 131 SLEPGGQFELSGAPLETLHQTCAEVNSHLYQVKAVAEEMGIGFLGIGFQPKWGLKDIPVM 190
           SLEPGGQFELSGAPLETLHQTCAEVNSHLYQVKAVAEEMGIGFLGIGFQPKW + DIP+M
Sbjct: 125 SLEPGGQFELSGAPLETLHQTCAEVNSHLYQVKAVAEEMGIGFLGIGFQPKWSVADIPIM 184

Query: 191 PKGRYEIMRNYMPKVGSLGLDMMFRTCTVQVNLDFSSEADMIRKFRAGLALQPIATALFA 250
           PKGRY+IMRNYMPKVGSLGLDMMFRTCTVQVNLDFSSE DM+RKFR GLALQPIATALFA
Sbjct: 185 PKGRYKIMRNYMPKVGSLGLDMMFRTCTVQVNLDFSSEQDMVRKFRVGLALQPIATALFA 244

Query: 251 NSPFTEGKPNGYLSMRSHIWTDTDNNRAGMLPFVFDDSFGFEQYVDYALDVPMYFVYRKK 310
           NSPFTEGKPNGYLS RSHIWTDTD +R GMLPFVFDD FGFE+YVDYALDVPMYFVYR  
Sbjct: 245 NSPFTEGKPNGYLSYRSHIWTDTDKDRTGMLPFVFDDDFGFERYVDYALDVPMYFVYRNG 304

Query: 311 KYIDCAGMSFRDFLAGKLPCLPGELPTLNDWENHLTTIFPEVRLKRYLEMRGADGGPWRR 370
           KYIDC GMSFRDF+AGKLP LPGELPTLNDWENHLTTIFPEVRLKRYLEMRGADGGPWRR
Sbjct: 305 KYIDCTGMSFRDFMAGKLPQLPGELPTLNDWENHLTTIFPEVRLKRYLEMRGADGGPWRR 364

Query: 371 LCALPAFWVGLLYDEDSLQNVLDMTADWTTGERQMLRNKVPKTGLKTPFRDGLLRHVAQD 430
           LCALPAFWVGLLYDE+SLQ+ LDM ADWT  ER+MLRNKVPKTGLKTPFRDG L+ VA++
Sbjct: 365 LCALPAFWVGLLYDEESLQSALDMIADWTPEEREMLRNKVPKTGLKTPFRDGTLKDVAEE 424

Query: 431 VLKLSKDGLERRGFKETGFLNEVAEVVRTGVTPAEKLLDMYHGKWRESVDPVFEELLY 488
           VLKL+KDGLERRG+ E GFLN +AE+VRTGVTPAE+LL++Y GKW  SVDPVFEELLY
Sbjct: 425 VLKLAKDGLERRGYNEEGFLNALAEIVRTGVTPAERLLELYEGKWGRSVDPVFEELLY 482

Length = 482

>gnl\|CDD\|130503 TIGR01436, glu_cys_lig_pln, glutamate--cysteine ligase, plant type	Back alignment and domain information

>gnl\|CDD\|226102 COG3572, GshA, Gamma-glutamylcysteine synthetase [Coenzyme metabolism]	Back alignment and domain information

>gnl\|CDD\|217898 pfam04107, GCS2, Glutamate-cysteine ligase family 2(GCS2)	Back alignment and domain information

>gnl\|CDD\|234213 TIGR03444, EgtA_Cys_ligase, ergothioneine biosynthesis glutamate--cysteine ligase EgtA	Back alignment and domain information

>gnl\|CDD\|237408 PRK13517, PRK13517, carboxylate-amine ligase; Provisional	Back alignment and domain information

>gnl\|CDD\|233699 TIGR02050, gshA_cyan_rel, carboxylate-amine ligase, YbdK family	Back alignment and domain information

>gnl\|CDD\|225081 COG2170, COG2170, Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>gnl\|CDD\|237406 PRK13515, PRK13515, carboxylate-amine ligase; Provisional	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		488
PLN02611		482	glutamate--cysteine ligase	100.0
TIGR01436		446	glu_cys_lig_pln glutamate--cysteine ligase, plant	100.0
COG3572		456	GshA Gamma-glutamylcysteine synthetase [Coenzyme m	100.0
TIGR03444		390	gshA_related glutamate--cysteine ligase family pro	100.0
PRK13516		373	gamma-glutamyl:cysteine ligase; Provisional	100.0
PRK13517		373	carboxylate-amine ligase; Provisional	100.0
PRK13518		357	carboxylate-amine ligase; Provisional	100.0
PRK13515		371	carboxylate-amine ligase; Provisional	100.0
TIGR02048		376	gshA_cyano glutamate--cysteine ligase, cyanobacter	100.0
TIGR02050		287	gshA_cyan_rel uncharacterized enzyme. This family	100.0
COG2170		369	Uncharacterized conserved protein [Function unknow	100.0
PF04107		288	GCS2: Glutamate-cysteine ligase family 2(GCS2); In	100.0
PRK02471		752	bifunctional glutamate--cysteine ligase/glutathion	99.95
PRK02107		523	glutamate--cysteine ligase; Provisional	98.97
TIGR01434		512	glu_cys_ligase glutamate--cysteine ligase. serve t	98.85
TIGR01435		737	glu_cys_lig_rel glutamate--cysteine ligase/gamma-g	98.6
PF04262		377	Glu_cys_ligase: Glutamate-cysteine ligase ; InterP	98.6
COG2918		518	GshA Gamma-glutamylcysteine synthetase [Coenzyme m	98.57
PF03074		371	GCS: Glutamate-cysteine ligase; InterPro: IPR00430	98.17
KOG3754		640	consensus Gamma-glutamylcysteine synthetase [Coenz	98.11
PLN02284		354	glutamine synthetase	97.67
COG0174		443	GlnA Glutamine synthetase [Amino acid transport an	97.52
PLN03036		432	glutamine synthetase; Provisional	97.5
TIGR03105		435	gln_synth_III glutamine synthetase, type III. This	97.27
PF12224		252	Amidoligase_2: Putative amidoligase enzyme; InterP	97.26
PRK09469		469	glnA glutamine synthetase; Provisional	97.2
TIGR00653		460	GlnA glutamine synthetase, type I. Alternate name:	97.12
PF00120		259	Gln-synt_C: Glutamine synthetase, catalytic domain	97.1

>PLN02611 glutamate--cysteine ligase	Back alignment and domain information

Probab=100.00  E-value=5.3e-118  Score=937.22  Aligned_cols=464  Identities=85%  Similarity=1.414  Sum_probs=454.6

Q ss_pred             ccccccccCCceeeeecCCCCCCcccCCCCCCHHHHHHHHHcCCCCCCCCeeEEEeccccccCCCCCCCChhHHHHHHHH
Q 011330           25 DNAGIGIRRGRRSIVAASPPTEDAVVVTEPLTKEDLVGYLASGCKPKEKWRIGTEHEKFGFEFGTLHPMKYEQIAELLNS  104 (488)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~k~~~~~~iGvE~E~~~vd~~t~~~~~~~~i~~lL~~  104 (488)
                      ++....+++++++||+++|++++++.+++||++++|++||++|||++++|+||+|||+|+|+.+|++|++|++|.++|+.
T Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~~~~gck~~~~~~iG~E~E~f~~~~~~~~pv~y~~i~~lL~~   98 (482)
T PLN02611         19 DSRRRTTRRGRSVIVAASPPTEEAVVATEPLTKEDLVAYLASGCKPKEKWRIGTEHEKFGFELATLRPMKYDQIAQLLEG   98 (482)
T ss_pred             ccccccccccccceecCCCcchhhcccCCCCCHHHHHHHHHhcCCCCCCCeeEEeeeeeeccCCCCCCCCHHHHHHHHHH
Confidence            34445778889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhccccchhcccccccccccCCceeeecCCcceeeecCccCCHHHHHHHHHHHHHHHHHHHHHcCCEEEeccCCCCCCC
Q 011330          105 IAERFDWEKVMEGDYIIGLKQGKQSISLEPGGQFELSGAPLETLHQTCAEVNSHLYQVKAVAEEMGIGFLGIGFQPKWGL  184 (488)
Q Consensus       105 l~~~~g~~~~~e~g~~igl~~~~~~islEp~~qiEis~~p~~~l~~~~~el~~~l~~l~~~a~~~g~~ll~~G~~P~~~~  184 (488)
                      |++++||++++|+|+||||.+++.+||+|||||||+|++||.+++++++++..++++++++++++|+.+++.|+||++++
T Consensus        99 l~~~~gw~~~~e~g~iIgl~~~g~~ITlEPGgQiElSt~p~~si~e~~~el~~~~~~l~~~a~~~Gl~l~g~G~hP~~~~  178 (482)
T PLN02611         99 LAERFGWEKIMEGDNIIGLKQDGQSVSLEPGGQFELSGAPLETLHQTCAEVNSHLYQVKAVAEEMGIGFLGIGFQPKWSV  178 (482)
T ss_pred             HHHhcCCceeccCCceecccCCCCceEecccceEEecccCcCCHHHHHHHHHHHHHHHHHHHHHcCCCeEccCCCCCCcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCchHHHHHHHhcccccchhhhhhcccceeEEeeCCCCHHHHHHHHHHhhhhhHHHHHHhhCCCCCCCCCCCCcc
Q 011330          185 KDIPVMPKGRYEIMRNYMPKVGSLGLDMMFRTCTVQVNLDFSSEADMIRKFRAGLALQPIATALFANSPFTEGKPNGYLS  264 (488)
Q Consensus       185 ~~~~~~pk~RY~~m~~~~~~~g~~g~~mm~~t~s~QVhld~~~e~d~i~~~n~~~~l~P~l~AL~ANSPf~~G~~tg~~s  264 (488)
                      .+++++||+||++|.+||+++|..|++||+.|||+||||||+|++|+++++|.+++|+|+++|||||||||+|++|||.|
T Consensus       179 ~~~~i~pk~RY~~M~~y~~~~g~~g~~MM~~t~g~QVhvd~~seed~v~~~~~~~~l~Pvl~ALfANSPf~eG~~tG~~S  258 (482)
T PLN02611        179 ADIPIMPKGRYKIMRNYMPKVGSLGLDMMFRTCTVQVNLDFSSEQDMVRKFRVGLALQPIATALFANSPFTEGKPNGYLS  258 (482)
T ss_pred             ccccCCCChHHHHHHHHHHHhhhhhhhhccceEEEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhCCccccCcCCCCcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccHHHHhcCCCCCCCCCCCCCCChhhHHHHHHHHhcccceeEeecCceecCCCCcHHHhhhCCCCCCCCCCCChhhhhhc
Q 011330          265 MRSHIWTDTDNNRAGMLPFVFDDSFGFEQYVDYALDVPMYFVYRKKKYIDCAGMSFRDFLAGKLPCLPGELPTLNDWENH  344 (488)
Q Consensus       265 ~R~~iw~~~~~~RtG~~P~~F~~~~~fe~y~~~ll~~p~~~v~r~g~~i~~~~~~~~d~~~~~~~~~~g~rPt~~d~~~h  344 (488)
                      +|+.+|+++|++|||++|+.|+++++|++|++|+|++|||||+|+|.|++..+.+|+|||+|++++++|++||++||++|
T Consensus       259 ~R~~iW~~~D~~rtg~~P~~F~d~~~fe~yv~~~Ld~Pm~fv~r~g~~~~~~g~tFrd~~~g~~~~~~~~~pt~~D~~~H  338 (482)
T PLN02611        259 YRSHIWTDTDKDRTGMLPFVFDDDFGFERYVDYALDVPMYFVYRNGKYIDCTGMSFRDFMAGKLPQLPGELPTLNDWENH  338 (482)
T ss_pred             hHHHHHHhcCCCCCCCCCCcCCChhHHHHHHHHHHCCCeEEEEeCCceecCCCCCHHHHHcCcCccCCCCCCCHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999998899999999999999


Q ss_pred             cCCCCCcccccceeeeecCCCCchHHHhHHHHHHHHhhhchhhccchhhcCCcccHHHHHHHHhhhcccCCCCccCCccH
Q 011330          345 LTTIFPEVRLKRYLEMRGADGGPWRRLCALPAFWVGLLYDEDSLQNVLDMTADWTTGERQMLRNKVPKTGLKTPFRDGLL  424 (488)
Q Consensus       345 lst~fp~VR~k~~IEiR~~D~~p~~~~~A~aAl~~GLl~~~~~~~~~~~~~~~~~~~~~~~lr~~aar~Gl~a~~~~~~l  424 (488)
                      |||+||+||+|+|||||++|++|++++||++|||+||+||..+++.+++++++|..+++..||.+++++||++++.+.++
T Consensus       339 LSt~FP~VRlK~~lE~R~aDa~P~~~~~a~~A~~~GLlyd~~al~~a~~l~~~w~~~~r~~lr~~~~~~Gl~~~~~~~~l  418 (482)
T PLN02611        339 LTTIFPEVRLKRYLEMRGADGGPWRRLCALPAFWVGLLYDEESLQSALDMIADWTPEEREMLRNKVPKTGLKTPFRDGTL  418 (482)
T ss_pred             HhcCCCCccccceEEeccccCCChhhhhhHHHHHHHHhcCHHHHHHHHHHhhcCCHHHHHHHHHHHHHhhccCccCCccH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHcCCCHHHHHHHHHcCChhhhHHHHHHhhcC
Q 011330          425 RHVAQDVLKLSKDGLERRGFKETGFLNEVAEVVRTGVTPAEKLLDMYHGKWRESVDPVFEELLY  488 (488)
Q Consensus       425 ~~~~~~LL~~a~~gL~~~G~~e~~~L~~l~~~l~~g~t~A~~~l~~~~~~~~~~v~~~~~e~~~  488 (488)
                      +++++++|++|++||.++|.+|..||++|.+++++|+|||+++++.|++.|++.|+++|+|++|
T Consensus       419 ~~~a~~~l~lA~~gL~~rg~~E~~~L~~l~~~v~~g~tpAd~~l~~~~~~~~~~~~~~~~~~~~  482 (482)
T PLN02611        419 KDVAEEVLKLAKDGLERRGYNEEGFLNALAEIVRTGVTPAERLLELYEGKWGRSVDPVFEELLY  482 (482)
T ss_pred             HHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHcCCCHHHHHHHHhcchhcCCchHhhhhhcC
Confidence            9999999999999999999999999999999999999999999999999999999999999988

>TIGR01436 glu_cys_lig_pln glutamate--cysteine ligase, plant type	Back alignment and domain information

>COG3572 GshA Gamma-glutamylcysteine synthetase [Coenzyme metabolism]	Back alignment and domain information

>TIGR03444 gshA_related glutamate--cysteine ligase family protein	Back alignment and domain information

>PRK13516 gamma-glutamyl:cysteine ligase; Provisional	Back alignment and domain information

>PRK13517 carboxylate-amine ligase; Provisional	Back alignment and domain information

>PRK13518 carboxylate-amine ligase; Provisional	Back alignment and domain information

>PRK13515 carboxylate-amine ligase; Provisional	Back alignment and domain information

>TIGR02048 gshA_cyano glutamate--cysteine ligase, cyanobacterial, putative	Back alignment and domain information

>TIGR02050 gshA_cyan_rel uncharacterized enzyme	Back alignment and domain information

>COG2170 Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF04107 GCS2: Glutamate-cysteine ligase family 2(GCS2); InterPro: IPR006336 Also known as gamma-glutamylcysteine synthetase and gamma-ECS (6	Back alignment and domain information

>PRK02471 bifunctional glutamate--cysteine ligase/glutathione synthetase; Provisional	Back alignment and domain information

>PRK02107 glutamate--cysteine ligase; Provisional	Back alignment and domain information

>TIGR01434 glu_cys_ligase glutamate--cysteine ligase	Back alignment and domain information

>TIGR01435 glu_cys_lig_rel glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type	Back alignment and domain information

>PF04262 Glu_cys_ligase: Glutamate-cysteine ligase ; InterPro: IPR007370 This is a group of bacterial glutamate-cysteine ligases that carry out the first step of the glutathione biosynthesis pathway according to the following equation: ATP + L-glutamate + L-cysteine = ADP + phosphate + L-glutamyl-L-cysteine (L-aminohexanoate can replace glutamate)	Back alignment and domain information

>COG2918 GshA Gamma-glutamylcysteine synthetase [Coenzyme metabolism]	Back alignment and domain information

>PF03074 GCS: Glutamate-cysteine ligase; InterPro: IPR004308 This family represents the catalytic subunit of glutamate-cysteine ligase (6	Back alignment and domain information

>KOG3754 consensus Gamma-glutamylcysteine synthetase [Coenzyme transport and metabolism]	Back alignment and domain information

>PLN02284 glutamine synthetase	Back alignment and domain information

>COG0174 GlnA Glutamine synthetase [Amino acid transport and metabolism]	Back alignment and domain information

>PLN03036 glutamine synthetase; Provisional	Back alignment and domain information

>TIGR03105 gln_synth_III glutamine synthetase, type III	Back alignment and domain information

>PF12224 Amidoligase_2: Putative amidoligase enzyme; InterPro: IPR022025 This family of proteins are likely to act as amidoligase enzymes [] Protein in this family are found in conserved gene neighbourhoods encoding a glutamine amidotransferase-like thiol peptidase (in proteobacteria) or an Aig2 family cyclotransferase protein (in firmicutes) []	Back alignment and domain information

>PRK09469 glnA glutamine synthetase; Provisional	Back alignment and domain information

>TIGR00653 GlnA glutamine synthetase, type I	Back alignment and domain information

>PF00120 Gln-synt_C: Glutamine synthetase, catalytic domain; InterPro: IPR008146 Glutamine synthetase (6	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		488
2gwd_A		449	Crystal Structure Of Plant Glutamate Cysteine Ligas		0.0
2gwc_A		449	Crystal Structure Of Plant Glutamate Cysteine Ligas		0.0

>pdb|2GWD|A Chain A, Crystal Structure Of Plant Glutamate Cysteine Ligase In Complex With Mg2+ And L-glutamate Length = 449

Back alignment and structure

Iteration: 1

Score = 841 bits (2172), Expect = 0.0, Method: Compositional matrix adjust. Identities = 396/449 (88%), Positives = 421/449 (93%) Query: 40 AASPPTEDAVVVTEPLTKEDLVGYLASGCKPKEKWRIGTEHEKFGFEFGTLHPMKYEQIA 99 AASPPTE+AVV TEPLT+EDL+ YLASGCK KEKWRIGTEHEKFGFE TL PMKY+QIA Sbjct: 1 AASPPTEEAVVATEPLTREDLIAYLASGCKSKEKWRIGTEHEKFGFEVNTLRPMKYDQIA 60 Query: 100 ELLNSIAERFDWEKVMEGDYIIGLKQGKQSISLEPGGQFELSGAPLETLHQTCAEVNSHL 159 ELLNSIAERF+WEKVMEGD IIGLKQGKQSISLEPGGQFELSGAPLETLHQTCAEVNSHL Sbjct: 61 ELLNSIAERFEWEKVMEGDKIIGLKQGKQSISLEPGGQFELSGAPLETLHQTCAEVNSHL 120 Query: 160 YQVKAVAEEMGIGFLGIGFQPKWGLKDIPVMPKGRYEIMRNYMPKVGSLGLDMMFRTCTV 219 YQVKAVAEEMGIGFLG+GFQPKW +DIP MPKGRY+IMRNYMPKVGSLGLDMM RTCTV Sbjct: 121 YQVKAVAEEMGIGFLGMGFQPKWRREDIPTMPKGRYDIMRNYMPKVGSLGLDMMLRTCTV 180 Query: 220 QVNLDFSSEADMIRKFRAGLALQPIATALFANSPFTEGKPNGYLSMRSHIWTDTDNNRAG 279 QVNLDFSSEADMIRKFRAGLALQPIATALFANSPFTEGKPNG+LSMRSHIWTDTD +R G Sbjct: 181 QVNLDFSSEADMIRKFRAGLALQPIATALFANSPFTEGKPNGFLSMRSHIWTDTDKDRTG 240 Query: 280 MLPFVFDDSFGFEQYVDYALDVPMYFVYRKKKYIDCAGMSFRDFLAGKLPCLPGELPTLN 339 MLPFVFDDSFGFEQYVDYALDVPMYF YR KY+DC GM+FR FLAGKLPCLPGELPT N Sbjct: 241 MLPFVFDDSFGFEQYVDYALDVPMYFAYRNGKYVDCTGMTFRQFLAGKLPCLPGELPTYN 300 Query: 340 DWENHLTTIFPEVRLKRYLEMRGADGGPWRRLCALPAFWVGLLYDEDSLQNVLDMTADWT 399 DWENHLTTIFPEVRLKRY+EMRGADGGPWRRLCALPAFWVGLLYDED LQ+VLD+TADWT Sbjct: 301 DWENHLTTIFPEVRLKRYMEMRGADGGPWRRLCALPAFWVGLLYDEDVLQSVLDLTADWT 360 Query: 400 TGERQMLRNKVPKTGLKTPFRDGLLRHVAQDVLKLSKDGLERRGFKETGFLNEVAEVVRT 459 ER+MLRNKVP TGLKTPFRDGLL+HVA+DVLKL+KDGLERRG+KE GFLN V EVVRT Sbjct: 361 PAEREMLRNKVPVTGLKTPFRDGLLKHVAEDVLKLAKDGLERRGYKEVGFLNAVTEVVRT 420 Query: 460 GVTPAEKLLDMYHGKWRESVDPVFEELLY 488 GVTPAE LL+MY+G+W +SVDPVF+ELLY Sbjct: 421 GVTPAENLLEMYNGEWGQSVDPVFQELLY 449

PyMOL of 2gwd

>pdb|2GWC|A Chain A, Crystal Structure Of Plant Glutamate Cysteine Ligase In Complex With A Transition State Analogue Length = 449

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		488
2gwd_A		449	Glutamate cysteine ligase; disulfide bridges, glut	1e-159
1r8g_A		372	Hypothetical protein YBDK; structural genomics, un	3e-39
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04

>2gwd_A Glutamate cysteine ligase; disulfide bridges, glutathione biosynthesis, beta-hairpin, R regulation; HET: GLU; 2.09A {Brassica juncea} PDB: 2gwc_A* Length = 449	Back alignment and structure

 Score =  457 bits (1176), Expect = e-159
 Identities = 396/449 (88%), Positives = 421/449 (93%)

Query: 40  AASPPTEDAVVVTEPLTKEDLVGYLASGCKPKEKWRIGTEHEKFGFEFGTLHPMKYEQIA 99
           AASPPTE+AVV TEPLT+EDL+ YLASGCK KEKWRIGTEHEKFGFE  TL PMKY+QIA
Sbjct: 1   AASPPTEEAVVATEPLTREDLIAYLASGCKSKEKWRIGTEHEKFGFEVNTLRPMKYDQIA 60

Query: 100 ELLNSIAERFDWEKVMEGDYIIGLKQGKQSISLEPGGQFELSGAPLETLHQTCAEVNSHL 159
           ELLNSIAERF+WEKVMEGD IIGLKQGKQSISLEPGGQFELSGAPLETLHQTCAEVNSHL
Sbjct: 61  ELLNSIAERFEWEKVMEGDKIIGLKQGKQSISLEPGGQFELSGAPLETLHQTCAEVNSHL 120

Query: 160 YQVKAVAEEMGIGFLGIGFQPKWGLKDIPVMPKGRYEIMRNYMPKVGSLGLDMMFRTCTV 219
           YQVKAVAEEMGIGFLG+GFQPKW  +DIP MPKGRY+IMRNYMPKVGSLGLDMM RTCTV
Sbjct: 121 YQVKAVAEEMGIGFLGMGFQPKWRREDIPTMPKGRYDIMRNYMPKVGSLGLDMMLRTCTV 180

Query: 220 QVNLDFSSEADMIRKFRAGLALQPIATALFANSPFTEGKPNGYLSMRSHIWTDTDNNRAG 279
           QVNLDFSSEADMIRKFRAGLALQPIATALFANSPFTEGKPNG+LSMRSHIWTDTD +R G
Sbjct: 181 QVNLDFSSEADMIRKFRAGLALQPIATALFANSPFTEGKPNGFLSMRSHIWTDTDKDRTG 240

Query: 280 MLPFVFDDSFGFEQYVDYALDVPMYFVYRKKKYIDCAGMSFRDFLAGKLPCLPGELPTLN 339
           MLPFVFDDSFGFEQYVDYALDVPMYF YR  KY+DC GM+FR FLAGKLPCLPGELPT N
Sbjct: 241 MLPFVFDDSFGFEQYVDYALDVPMYFAYRNGKYVDCTGMTFRQFLAGKLPCLPGELPTYN 300

Query: 340 DWENHLTTIFPEVRLKRYLEMRGADGGPWRRLCALPAFWVGLLYDEDSLQNVLDMTADWT 399
           DWENHLTTIFPEVRLKRY+EMRGADGGPWRRLCALPAFWVGLLYDED LQ+VLD+TADWT
Sbjct: 301 DWENHLTTIFPEVRLKRYMEMRGADGGPWRRLCALPAFWVGLLYDEDVLQSVLDLTADWT 360

Query: 400 TGERQMLRNKVPKTGLKTPFRDGLLRHVAQDVLKLSKDGLERRGFKETGFLNEVAEVVRT 459
             ER+MLRNKVP TGLKTPFRDGLL+HVA+DVLKL+KDGLERRG+KE GFLN V EVVRT
Sbjct: 361 PAEREMLRNKVPVTGLKTPFRDGLLKHVAEDVLKLAKDGLERRGYKEVGFLNAVTEVVRT 420

Query: 460 GVTPAEKLLDMYHGKWRESVDPVFEELLY 488
           GVTPAE LL+MY+G+W +SVDPVF+ELLY
Sbjct: 421 GVTPAENLLEMYNGEWGQSVDPVFQELLY 449

PyMOL of 2gwd

>1r8g_A Hypothetical protein YBDK; structural genomics, unknown function, carboxylate-amine ligase, structure 2 function project, S2F; 2.15A {Escherichia coli} SCOP: d.128.1.3 PDB: 1tt4_A Length = 372	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		488
2gwd_A		449	Glutamate cysteine ligase; disulfide bridges, glut	100.0
1r8g_A		372	Hypothetical protein YBDK; structural genomics, un	100.0
3ln6_A		750	Glutathione biosynthesis bifunctional protein GSH;	99.96
1va6_A		518	Glutamate--cysteine ligase; glutathione homeostasi	99.96
3ln7_A		757	Glutathione biosynthesis bifunctional protein GSH;	99.93
3nzt_A		525	Glutamate--cysteine ligase; structural genomics, c	99.91
3ig5_A		692	Glutamate-cysteine ligase; glutathione, ATP-grAsp,	99.59
2d3a_A		356	Glutamine synthetase; ligase; HET: P3S ADP; 2.63A	97.23
3fky_A		370	Glutamine synthetase; beta-grAsp, catalytic domain	97.21
1f52_A		468	Glutamine synthetase; ADP, MPD, ligase; HET: ADP;	97.2
2ojw_A		384	Glutamine synthetase; amino-acid biosynthesis, lig	97.08
3qaj_A		444	Glutamine synthetase; AMP-PCP, ACP, ligase; HET: G	96.87
4hpp_A		443	Probable glutamine synthetase; glutamine synthase	96.8
3ng0_A		473	Glutamine synthetase; GSI, nitrogen metabolism, sy	96.71
4acf_A		486	Glutamine synthetase 1; ligase, nucleotide-binding	96.56
3o6x_A		729	Glutamine synthetase; type III, beta barrel,dodeca	95.42
2j9i_A		421	Glutamate-ammonia ligase domain-containing protein	90.43

>2gwd_A Glutamate cysteine ligase; disulfide bridges, glutathione biosynthesis, beta-hairpin, R regulation; HET: GLU; 2.09A {Brassica juncea} PDB: 2gwc_A*	Back alignment and structure

Probab=100.00  E-value=1.6e-94  Score=766.10  Aligned_cols=449  Identities=88%  Similarity=1.460  Sum_probs=419.8

Q ss_pred             ecCCCCCCcccCCCCCCHHHHHHHHHcCCCCCCCCeeEEEeccccccCCCCCCCChhHHHHHHHHHhhccccchhccccc
Q 011330           40 AASPPTEDAVVVTEPLTKEDLVGYLASGCKPKEKWRIGTEHEKFGFEFGTLHPMKYEQIAELLNSIAERFDWEKVMEGDY  119 (488)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~l~~~~~~g~k~~~~~~iGvE~E~~~vd~~t~~~~~~~~i~~lL~~l~~~~g~~~~~e~g~  119 (488)
                      |+|||++.++..++|.++++|++||++|||+++.++||+|+|+++||.+|+++++++.+.++|+.+.+.+||++..++|+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~iGvE~E~~lVd~~~~~~~~~~~~~~lL~~l~~~~g~~~~~~~~~   80 (449)
T 2gwd_A            1 AASPPTEEAVVATEPLTREDLIAYLASGCKSKEKWRIGTEHEKFGFEVNTLRPMKYDQIAELLNSIAERFEWEKVMEGDK   80 (449)
T ss_dssp             -------------CCCCHHHHHHHHHTTCCCGGGCCEEEEEEEEEEETTTCCBCCHHHHHHHHHHHHHHHTCEEEEETTE
T ss_pred             CCCCCCcccccCCCccCHHHHHHHHHhcCCCCCCCeEEEEeEEEeeecCCCCCCChHHHHHHHHHHHHhhccCccccccc
Confidence            68999999999999988999999999999999999999999999999999999998777999999988899999999999


Q ss_pred             ccccccCCceeeecCCcceeeecCccCCHHHHHHHHHHHHHHHHHHHHHcCCEEEeccCCCCCCCCCCCCCCchHHHHHH
Q 011330          120 IIGLKQGKQSISLEPGGQFELSGAPLETLHQTCAEVNSHLYQVKAVAEEMGIGFLGIGFQPKWGLKDIPVMPKGRYEIMR  199 (488)
Q Consensus       120 ~igl~~~~~~islEp~~qiEis~~p~~~l~~~~~el~~~l~~l~~~a~~~g~~ll~~G~~P~~~~~~~~~~pk~RY~~m~  199 (488)
                      +||+++++.+|++||++|||++|+||.+++++++++...++.++++++++|+.|+++|+||++++.+++++||+||+.|.
T Consensus        81 ~~~l~~~~~~i~~E~~~qiEl~t~p~~~~~e~~~~l~~~~~~~~~~a~~~g~~l~~~G~~P~~~~~~~~~~~~~RY~~m~  160 (449)
T 2gwd_A           81 IIGLKQGKQSISLEPGGQFELSGAPLETLHQTCAEVNSHLYQVKAVAEEMGIGFLGMGFQPKWRREDIPTMPKGRYDIMR  160 (449)
T ss_dssp             EEEEEETTEEEEECTTCCEEEECCCBSSHHHHHHHHHHHHHHHHHHHHHHTEEEECCSBCSSCCGGGSCCCSCHHHHHHH
T ss_pred             cccccCCCceEEecCCceEEecCCCcCCHHHHHHHHHHHHHHHHHHHHHcCCceeeccCCCCCCccccCCCCchHHHHHH
Confidence            99999988999999999999999999999999999999999999999999999999999999998899999999999999


Q ss_pred             HhcccccchhhhhhcccceeEEeeCCCCHHHHHHHHHHhhhhhHHHHHHhhCCCCCCCCCCCCccccHHHHhcCCCCCCC
Q 011330          200 NYMPKVGSLGLDMMFRTCTVQVNLDFSSEADMIRKFRAGLALQPIATALFANSPFTEGKPNGYLSMRSHIWTDTDNNRAG  279 (488)
Q Consensus       200 ~~~~~~g~~g~~mm~~t~s~QVhld~~~e~d~i~~~n~~~~l~P~l~AL~ANSPf~~G~~tg~~s~R~~iw~~~~~~RtG  279 (488)
                      ++|+++|.+|++||..|||+||||+++|++++++++|.+++++|+++|||||||||+|++|||+|+|+.+|+++|++|+|
T Consensus       161 ~~~~~~g~~g~~mm~~~~g~qVhl~~~~~~~~~~~~~~~~~~~P~llALsAnSPf~~G~~tg~~S~R~~~w~~~~~~r~G  240 (449)
T 2gwd_A          161 NYMPKVGSLGLDMMLRTCTVQVNLDFSSEADMIRKFRAGLALQPIATALFANSPFTEGKPNGFLSMRSHIWTDTDKDRTG  240 (449)
T ss_dssp             HHGGGTCSSHHHHHHHBCEEEEEECCSSHHHHHHHHHHHHHHHHHHHHHHCCBCEETTEECSCSBHHHHHTTSSCGGGCS
T ss_pred             HHHHHhchhHHHHhhcceeeEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhCCcccccCcCCCcchHHHHHhhCCCCcCC
Confidence            99988899999999999999999999999999999999999999999999999999999999999999999999988999


Q ss_pred             CCCCCCCChhhHHHHHHHHhcccceeEeecCceecCCCCcHHHhhhCCCCCCCCCCCChhhhhhccCCCCCcccccceee
Q 011330          280 MLPFVFDDSFGFEQYVDYALDVPMYFVYRKKKYIDCAGMSFRDFLAGKLPCLPGELPTLNDWENHLTTIFPEVRLKRYLE  359 (488)
Q Consensus       280 ~~P~~F~~~~~fe~y~~~ll~~p~~~v~r~g~~i~~~~~~~~d~~~~~~~~~~g~rPt~~d~~~hlst~fp~VR~k~~IE  359 (488)
                      ++|+.|+++++|++|+++++++||||+.++|.+++..+.+|+|||++.++.+.|+.|+++||.+|+||+||+||+|+|||
T Consensus       241 ~~p~~f~~~~~~e~yv~~l~~~~~~~v~~~g~~~~~~~~~f~~~l~~~l~~~~~~~p~~~d~~~~~st~~~~vRpk~~iE  320 (449)
T 2gwd_A          241 MLPFVFDDSFGFEQYVDYALDVPMYFAYRNGKYVDCTGMTFRQFLAGKLPCLPGELPTYNDWENHLTTIFPEVRLKRYME  320 (449)
T ss_dssp             CCGGGGSTTCSHHHHHHHHHHSCEEEEEETTEEEEEEEECHHHHHTTCCTTSTTCCCCHHHHHHHHTTCCCSEEESSSEE
T ss_pred             CCCcccCCccCHHHHHHHHHcCCceEeecCCccccCCcchHHHhhhcccccccCCCCCHHHHHhhhcccCcccCcCCceE
Confidence            88999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eecCCCCchHHHhHHHHHHHHhhhchhhccchhhcCCcccHHHHHHHHhhhcccCCCCccCCccHHHHHHHHHHHHHHHH
Q 011330          360 MRGADGGPWRRLCALPAFWVGLLYDEDSLQNVLDMTADWTTGERQMLRNKVPKTGLKTPFRDGLLRHVAQDVLKLSKDGL  439 (488)
Q Consensus       360 iR~~D~~p~~~~~A~aAl~~GLl~~~~~~~~~~~~~~~~~~~~~~~lr~~aar~Gl~a~~~~~~l~~~~~~LL~~a~~gL  439 (488)
                      ||++|+||+++++|++||++||+++..+++..+...++|..++.+.+|.+|+|+||++.+.+.++++++.+||++++++|
T Consensus       321 ~R~~D~~p~~~~~a~aAl~~gL~~~~~~~~~~~~~~~~~~~~~~~~~~~~AaR~Gl~a~~~~~~~~~~~~~ll~~a~~~L  400 (449)
T 2gwd_A          321 MRGADGGPWRRLCALPAFWVGLLYDEDVLQSVLDLTADWTPAEREMLRNKVPVTGLKTPFRDGLLKHVAEDVLKLAKDGL  400 (449)
T ss_dssp             EEEEECCCHHHHHHHHHHHHHHHSSHHHHHHHHHHTTTCCHHHHHHHHHHHHHHGGGSEETTEEHHHHHHHHHHHHHHHH
T ss_pred             eecCCCCCcHHHHHHHHHHHHHHhhHHhhhhhHhhcCCcCHHHHHHHHHHHHHhccCCccCCCcHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999998877778877889988876666779999999999989999999999999999999


Q ss_pred             HhcCCchhhhHHHHHHHHHcCCCHHHHHHHHHcCChhhhHHHHHHhhcC
Q 011330          440 ERRGFKETGFLNEVAEVVRTGVTPAEKLLDMYHGKWRESVDPVFEELLY  488 (488)
Q Consensus       440 ~~~G~~e~~~L~~l~~~l~~g~t~A~~~l~~~~~~~~~~v~~~~~e~~~  488 (488)
                      .++|.++..||+.|.+++++|+|+|+||++.|+++|.++|+.+++|++|
T Consensus       401 ~~~g~~~~~~l~~l~~~~~~g~t~A~~~l~~~~~~~~~~v~~~~~~~~~  449 (449)
T 2gwd_A          401 ERRGYKEVGFLNAVTEVVRTGVTPAENLLEMYNGEWGQSVDPVFQELLY  449 (449)
T ss_dssp             HHHTSCCGGGGHHHHHHHHHTCCHHHHHHHHHHTTTTTCSTTHHHHTBC
T ss_pred             HHcCCcHHHHHHHHHHHHHcCCCHHHHHHHHHhccccCcHHHHHHHhcC
Confidence            9999887789999999999999999999999999999999999999988

PyMOL of 2gwd

>1r8g_A Hypothetical protein YBDK; structural genomics, unknown function, carboxylate-amine ligase, structure 2 function project, S2F; 2.15A {Escherichia coli} SCOP: d.128.1.3 PDB: 1tt4_A	Back alignment and structure

>3ln6_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamyl cysteine ligase domain, ATP-grAsp domain, HYB enzyme; 2.95A {Streptococcus agalactiae serogroup V}	Back alignment and structure

>1va6_A Glutamate--cysteine ligase; glutathione homeostasis, beta barrel, peptide synthesis, transition state analogue; HET: P2S ADP P6G; 2.10A {Escherichia coli} SCOP: d.128.1.4 PDB: 1v4g_A* 2d32_A* 2d33_A*	Back alignment and structure

>3ln7_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamylcysteine ligase domain, ATP-grAsp domain, HYBR enzyme, ATP-binding; 3.20A {Pasteurella multocida}	Back alignment and structure

>3nzt_A Glutamate--cysteine ligase; structural genomics, center for structural genomics of infec diseases, csgid, alpha and beta proteins; HET: AMP; 2.00A {Francisella tularensis subsp}	Back alignment and structure

>3ig5_A Glutamate-cysteine ligase; glutathione, ATP-grAsp, ATP-binding, glutathione biosynthesis, nucleotide-binding, phosphoprotein; HET: GLU PGE; 2.10A {Saccharomyces cerevisiae} PDB: 3ig8_A* 3lvv_A* 3lvw_A*	Back alignment and structure

>2d3a_A Glutamine synthetase; ligase; HET: P3S ADP; 2.63A {Zea mays} PDB: 2d3b_A* 2d3c_A*	Back alignment and structure

>3fky_A Glutamine synthetase; beta-grAsp, catalytic domain, acetylation, cytoplasm, ligase, UBL conjugation; HET: FLC; 2.95A {Saccharomyces cerevisiae}	Back alignment and structure

>1f52_A Glutamine synthetase; ADP, MPD, ligase; HET: ADP; 2.49A {Salmonella typhimurium} SCOP: d.15.9.1 d.128.1.1 PDB: 1f1h_A* 1fpy_A* 1lgr_A* 2lgs_A* 2gls_A	Back alignment and structure

>2ojw_A Glutamine synthetase; amino-acid biosynthesis, ligase, structural GENO structural genomics consortium, SGC; HET: ADP; 2.05A {Homo sapiens} PDB: 2qc8_A* 2uu7_A	Back alignment and structure

>4hpp_A Probable glutamine synthetase; glutamine synthase homolog, glutamate, polyamine, ligase; HET: GLU; 2.50A {Pseudomonas aeruginosa}	Back alignment and structure

>3ng0_A Glutamine synthetase; GSI, nitrogen metabolism, synec ligase; HET: ANP; 2.80A {Synechocystis SP}	Back alignment and structure

>4acf_A Glutamine synthetase 1; ligase, nucleotide-binding, TRI-substituted IMID TAUT state, RV2220, GLNA1; HET: 46B P3S; 2.00A {Mycobacterium tuberculosis} PDB: 2wgs_A* 2whi_A* 3zxr_A* 3zxv_A* 2bvc_A* 1hto_A* 1htq_A*	Back alignment and structure

>3o6x_A Glutamine synthetase; type III, beta barrel,dodecamer, ligas; HET: P3S ADP; 3.50A {Bacteroides fragilis}	Back alignment and structure

>2j9i_A Glutamate-ammonia ligase domain-containing protein 1; 17.00A {Mus musculus}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		488
d1r8ga_		368	d.128.1.3 (A:) Carboxylate-amine ligase YbdK {Esch	7e-59

>d1r8ga_ d.128.1.3 (A:) Carboxylate-amine ligase YbdK {Escherichia coli [TaxId: 562]} Length = 368	Back information, alignment and structure


class: Alpha and beta proteins (a+b)
fold: Glutamine synthetase/guanido kinase
superfamily: Glutamine synthetase/guanido kinase
family: Glutamate-cysteine ligase family 2 (GCS2)
domain: Carboxylate-amine ligase YbdK
species: Escherichia coli [TaxId: 562]

 Score =  196 bits (498), Expect = 7e-59
 Identities = 54/419 (12%), Positives = 113/419 (26%), Gaps = 61/419 (14%)

Query: 69  KPKEKWRIGTEHEKFGFEFGTLHPMKYEQIAELLNSIAERFDWEKVMEGDYIIGLKQGKQ 128
              E + +G E E            +    + L++++  +                    
Sbjct: 5   HVSEPFTLGIELEMQVVNPPGYDLSQD--SSMLIDAVKNKI----------------TAG 46

Query: 129 SISLE-PGGQFELSGAPLETLHQTCAEVNSHLYQVKAVAEEMGIGFLGIGFQPKWGLKDI 187
            +  +      EL+      ++Q   + ++    V   A +  +   G G  P    +  
Sbjct: 47  EVKHDITESMLELATDVCRDINQAAGQFSAMQKVVLQAATDHHLEICGGGTHPFQKWQRQ 106

Query: 188 PVMPKGRYEIMRNYMPKVGSLGLDMMFRTCTVQVNLDFSSEADMIRKFRAGLALQPIATA 247
            V    RY+        +               V++  +S  D I          P   A
Sbjct: 107 EVCDNERYQRTLENFGYLI-----QQATVFGQHVHVGCASGDDAIYLLHGLSRFVPHFIA 161

Query: 248 LFANSPFTEGKPNGYLSMRSHIWTDTDNNRAGMLPFVFDDSFGFEQYVDYALDVPMYFVY 307
           L A SP+ +G    + S R +I++   +N          +   FE          M    
Sbjct: 162 LSAASPYMQGTDTRFASSRPNIFSAFPDN---GPMPWVSNWQQFEALFRCLSYTTMIDSI 218

Query: 308 RKKKYIDCAGMSFRDFLAGKLPCLPGELPTLNDWENHLTTIFPEVRLKRYLEMRGADGGP 367
           +   + D         +  ++   P    TL+           +      L  R      
Sbjct: 219 K-DLHWDIRPSPHFGTVEVRVMDTP---LTLSHA--VNMAGLIQATAHWLLTERPFKHQE 272

Query: 368 WRRLCALPAFWVGLLYDEDSLQNVLDMTADWTTGERQMLRNKVPKTGLKTPFRDGLLRHV 427
              L      +    Y  + +        D  TG+R+                   L   
Sbjct: 273 KDYLLYKFNRFQACRYGLEGVI------TDPHTGDRR------------------PLTED 308

Query: 428 AQDVLKLSKDGLERRGFKETGFLNEVAEVVRTGVTPAEKLLDMYHGKWRESVDPVFEEL 486
              +L+       + G   +  +  +   V +G+  A+ + D        S+  + ++ 
Sbjct: 309 TLRLLEKIAPSAHKIG--ASSAIEALHRQVVSGLNEAQLMRDFVAD--GGSLIGLVKKH 363

PyMOL of d1r8ga_

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		488
d1r8ga_		368	Carboxylate-amine ligase YbdK {Escherichia coli [T	100.0
d2d32a1		518	Gamma-glutamylcysteine synthetase GshA {Escherichi	98.92
d1f52a2		368	Glutamine synthetase, C-terminal domain {Salmonell	96.85
d2bvca2		374	Glutamine synthetase, C-terminal domain {Mycobacte	96.8

>d1r8ga_ d.128.1.3 (A:) Carboxylate-amine ligase YbdK {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Glutamine synthetase/guanido kinase
superfamily: Glutamine synthetase/guanido kinase
family: Glutamate-cysteine ligase family 2 (GCS2)
domain: Carboxylate-amine ligase YbdK
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.3e-59  Score=481.90  Aligned_cols=351  Identities=15%  Similarity=0.115  Sum_probs=290.6

Q ss_pred             CCCCCCCeeEEEeccccccCCCCCCCChhHHHHHHHHHhhccccchhcccccccccccCCceeeec-CCcceeeecCccC
Q 011330           68 CKPKEKWRIGTEHEKFGFEFGTLHPMKYEQIAELLNSIAERFDWEKVMEGDYIIGLKQGKQSISLE-PGGQFELSGAPLE  146 (488)
Q Consensus        68 ~k~~~~~~iGvE~E~~~vd~~t~~~~~~~~i~~lL~~l~~~~g~~~~~e~g~~igl~~~~~~islE-p~~qiEis~~p~~  146 (488)
                      +|.+++++||+|+|+++||++|+.+++..  .++|+.+.+.                .....|+.| +++|||++|+||+
T Consensus         4 f~~~~~~tiGvE~E~~lvd~~~~~~~~~~--~~ll~~~~~~----------------~~~~~i~~El~~~qiEl~t~p~~   65 (368)
T d1r8ga_           4 FHVSEPFTLGIELEMQVVNPPGYDLSQDS--SMLIDAVKNK----------------ITAGEVKHDITESMLELATDVCR   65 (368)
T ss_dssp             CCCCCTTCEEEEEEEEEEETTTTEECSCC--HHHHTTTSSS----------------CSSSEEEECSSSSEEEEECCSBS
T ss_pred             CCCCCCCceEEEEeeeeeCCCCCccCCcH--HHHHHHhhcc----------------ccCCccccccCCceEEEcCCCCC
Confidence            56788899999999999999988888877  8888765442                134679999 8999999999999


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHcCCEEEeccCCCCCCCCCCCCCCchHHHHHHHhcccccchhhhhhcccceeEEeeCCC
Q 011330          147 TLHQTCAEVNSHLYQVKAVAEEMGIGFLGIGFQPKWGLKDIPVMPKGRYEIMRNYMPKVGSLGLDMMFRTCTVQVNLDFS  226 (488)
Q Consensus       147 ~l~~~~~el~~~l~~l~~~a~~~g~~ll~~G~~P~~~~~~~~~~pk~RY~~m~~~~~~~g~~g~~mm~~t~s~QVhld~~  226 (488)
                      +++++++++.++++.+..+++++|+.++++|+||+..+.+++++|++||+.|.+++   |..+..||  +||+||||+++
T Consensus        66 ~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~g~~P~~~~~~~~~~~~~ry~~~~~~~---~~~~~~~~--~~g~hv~~~~~  140 (368)
T d1r8ga_          66 DINQAAGQFSAMQKVVLQAATDHHLEICGGGTHPFQKWQRQEVCDNERYQRTLENF---GYLIQQAT--VFGQHVHVGCA  140 (368)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHTTCEEECCSBCSSCCC----------------CC---GGGGCSCC--BCEEEEEEECS
T ss_pred             CHHHHHHHHHHHHHHHHHHHhhcCCcccccCcccccCcccccCCccHHHHHHHHhc---CcHHHHHh--hcccceeecCC
Confidence            99999999999999999999999999999999999999999999999999999998   55577888  99999999999


Q ss_pred             CHHHHHHHHHHhhhhhHHHHHHhhCCCCCCCCCCCCccccHHHHhcCCCCCCCCCCCCCCChhhHHHHHHHHhcccceeE
Q 011330          227 SEADMIRKFRAGLALQPIATALFANSPFTEGKPNGYLSMRSHIWTDTDNNRAGMLPFVFDDSFGFEQYVDYALDVPMYFV  306 (488)
Q Consensus       227 ~e~d~i~~~n~~~~l~P~l~AL~ANSPf~~G~~tg~~s~R~~iw~~~~~~RtG~~P~~F~~~~~fe~y~~~ll~~p~~~v  306 (488)
                      |++++++++|.++.++|+++||||||||++|++|||.|+|..+|.+++   ++.+|..|.++..|++|++++++++++  
T Consensus       141 d~~~~~~~~~~~~~~~p~l~aL~anSP~~~G~~tg~~s~R~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~--  215 (368)
T d1r8ga_         141 SGDDAIYLLHGLSRFVPHFIALSAASPYMQGTDTRFASSRPNIFSAFP---DNGPMPWVSNWQQFEALFRCLSYTTMI--  215 (368)
T ss_dssp             SHHHHHHHHHHHHTTHHHHHHHHCCBCEETTEECSCSBCGGGGGTTST---TCSSCCCCSSHHHHHHHHHHHTTSSSC--
T ss_pred             CHHHHHHHHHHHHHHhHHHHHHhcCchhhcCcCCCCcCCchhHHhcCC---cccccccccchhhHHHHHHHHHhcccc--
Confidence            999999999999999999999999999999999999999999999996   555688899999999999999987322  


Q ss_pred             eecCceecCCCCcHHHhhhCCCCCCCCCCCChhhhhhccCCCCCccccc---ceeeeecCCCCc-hHHHhHHHHHHHHhh
Q 011330          307 YRKKKYIDCAGMSFRDFLAGKLPCLPGELPTLNDWENHLTTIFPEVRLK---RYLEMRGADGGP-WRRLCALPAFWVGLL  382 (488)
Q Consensus       307 ~r~g~~i~~~~~~~~d~~~~~~~~~~g~rPt~~d~~~hlst~fp~VR~k---~~IEiR~~D~~p-~~~~~A~aAl~~GLl  382 (488)
                                                          .|.+++|++||++   +|||+|++|++| +++.++++||+.+++
T Consensus       216 ------------------------------------~~~~~~~~~vRp~~~~~~iEiR~~D~~p~~~~~~~~aa~~~~l~  259 (368)
T d1r8ga_         216 ------------------------------------DSIKDLHWDIRPSPHFGTVEVRVMDTPLTLSHAVNMAGLIQATA  259 (368)
T ss_dssp             ------------------------------------SSGGGCCCSEEEETTTTEEEEEEEECCSSHHHHHHHHHHHHHHH
T ss_pred             ------------------------------------ccCCeeeeecCCccccCcccccCCCCCCCHHHHHHHhhHHHHHH
Confidence                                                3556789999997   689999999999 799999999999997


Q ss_pred             hchhhccch-hhcCCcccHHHHHHHHhhhcccCCCCccCC------ccHHHHHHHHHHHHHHHHHhcCCchhhhHHHHHH
Q 011330          383 YDEDSLQNV-LDMTADWTTGERQMLRNKVPKTGLKTPFRD------GLLRHVAQDVLKLSKDGLERRGFKETGFLNEVAE  455 (488)
Q Consensus       383 ~~~~~~~~~-~~~~~~~~~~~~~~lr~~aar~Gl~a~~~~------~~l~~~~~~LL~~a~~gL~~~G~~e~~~L~~l~~  455 (488)
                      ......... ......+...+|.|   +|+|+|+++.+.+      .++++++.+||+.++++|+++|+.  .||++|.+
T Consensus       260 ~~l~~~~~~~~~~~~~~~~~~n~~---~aar~Gl~~~l~~~~~~~~~~~~~~~~~Ll~~~~~~l~~lg~~--~~l~~l~~  334 (368)
T d1r8ga_         260 HWLLTERPFKHQEKDYLLYKFNRF---QACRYGLEGVITDPHTGDRRPLTEDTLRLLEKIAPSAHKIGAS--SAIEALHR  334 (368)
T ss_dssp             HHHHHHCCCCCCGGGGTTHHHHHH---HHHHHGGGSEEECTTTCCEEEHHHHHHHHHHHSHHHHHHHTCH--HHHHHHHH
T ss_pred             HHHHhcCCCCcchhhHHHHHHHHH---HHHhhcccccccccCCCcEeEHHHHHHHHHHHHHHHHHHCCCH--HHHHHHHH
Confidence            665433222 22223445566777   7999999977532      489999999999999999999864  58999999


Q ss_pred             HHHcCCCHHHHHHHHHc--CChhhhHHHHHHhhc
Q 011330          456 VVRTGVTPAEKLLDMYH--GKWRESVDPVFEELL  487 (488)
Q Consensus       456 ~l~~g~t~A~~~l~~~~--~~~~~~v~~~~~e~~  487 (488)
                      ++++|.|+|+||++.|+  |++.++|+.+++..+
T Consensus       335 ~v~~g~t~A~~lr~~~~~~gsl~~~v~~~~e~~~  368 (368)
T d1r8ga_         335 QVVSGLNEAQLMRDFVADGGSLIGLVKKHCEIWA  368 (368)
T ss_dssp             HHHHCCCHHHHHHHHHHTTCCHHHHHHHHHHHHC
T ss_pred             HHHhCCCHHHHHHHHHHcCCCHHHHHHHHHHHhC
Confidence            99999999999999995  789999999987653

PyMOL of d1r8ga_

>d2d32a1 d.128.1.4 (A:1-518) Gamma-glutamylcysteine synthetase GshA {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1f52a2 d.128.1.1 (A:101-468) Glutamine synthetase, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}	Back information, alignment and structure

>d2bvca2 d.128.1.1 (A:105-478) Glutamine synthetase, C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]}	Back information, alignment and structure