Citrus Sinensis ID: 011333

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------49
Protein Sequence
MGNNVSVMVLALLLLCSGITAAPSSASPAKIVSGFVSNGVSVLMKWLWSLKTTTKTAITGRPMMKFESGYTVETVFDGSKLGIEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNMAIRKISDSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCAYQYGSSFPLGIAVLLAAGFFGYMLALLQRRVGTIVSSQNDHGTVNTSNSASPYQKPLKSVRPPLIPTEEDEGKQEEEGFFGSLAKLFANTESSVLEILRGIFPHLRKKTLSNQYPSLQKHSTSWPAQESFVIPHEDEPPSIDTRTPTPRKTYAFMSKDAEKIHQLRQSRAFYSGWDGDFQQQKQQHHHRYQSSTPNTYYEQSSEKTNEIVFGAIQEQGAKREAVVIKPVNYGDPIYDHQNIRPRANFTGYSHGY
Secondary Structure (PSIPRED)
ccccEEEEEEEEEcccccccccccccccccccEEEEEEccccEEEEEEEccccEEEEEEccccEEEccccEEEEEEcccccccccEEEEEcccccEEEEEccccEEEEEEccccEEcccEEEEEccccccccccccccccccccccEEEEcccccEEEEEccccEEEEEccccEEEEEEEcccccccccccccccccccccccEEEEccccEEEEEEccccEEEEEEccccEEEEEEcccccccEEEEcccccccccEEEEcccEEEEEEccccEEEEccccccccccccccccccccccccccccccccccccccccEEEcccccEEEEHHcccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccccccHHHHHHHccccccccccccccHHHHHHHccccccccccccccccccccccEEEEcEEccccccccEEEEccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHccccccccccccccccccEEccccHHEEEEcccccEEEEEEccccEEEEEcccEEEEEEccccccccccEEEEcccccEEEEEccccEEEEEccccccccEEEEEEcccccccccccccccccccccccEEEEcccccEEEEEccccEEEEEccccEEEEEEcccccccccccccHHHHHHcccccEEEEcccccEEEEEccccEEEEEEcccccEEEEccccccccHHHHHHHHHHHHHHHHHHHcccccEccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccHHHHHHHcccccccccccccHcccccHcHccccccccccEEEEccccccEEEEEEEEEccccccEEEEEEEccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MGNNVSVMVLALLLLCSgitaapssaspakIVSGFVSNGVSVLMKWLWSLKTTTktaitgrpmmkfesgytvetvfdgsklgiepysvevlpggelLILDSANSNLYRISSslslysrpklvagsaegysghvdgkprearmnhpkgltvddrgniyIADTMNMAIRKisdsgvttiaggkwgrggghvdgpsedakfsndfdVVYIGSSCSLLVIDRGNRAIREIQLHFddcayqygssfPLGIAVLLAAGFFGYMLALLQRRVGTIvssqndhgtvntsnsaspyqkplksvrpplipteedegkqeeeGFFGSLAKLFANTESSVLEILRGIFphlrkktlsnqypslqkhstswpaqesfviphedeppsidtrtptprktyAFMSKDAEKIHQLRQSrafysgwdgdfqqqkqqhhhryqsstpntyyeqssekTNEIVFGAIQEqgakreavvikpvnygdpiydhqnirpranftgyshgy
Flexible Loop (DISEMBL)
MGNNVSVMVLALLLLCSGITAAPSSASPAKIVSGFVSNGVSVLMKWLWSLKTTtktaitgrpmmkfeSGYTVETVFDGSKLGIEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEgysghvdgkprearmnhpkgltvddrgnIYIADTMNMAIRKISDSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCAYQYGSSFPLGIAVLLAAGFFGYMLALLQRRVGTIVSSqndhgtvntsnsaspyqkplksvRPPLIPTEEDEGKQEEEGFFGSLAKLFANTESSVLEILRGIFPHLRKKTLSNQYPSLQKHSTSWPAQESfviphedeppsidtrtptpRKTYAFMSKDAEKIHQLRQSRAFYSGWDGDFQQQKQQHHHRYQSSTPNTYYEQSSEKTNEIVFGAIQEQGAKREAVVIKPVNygdpiydhqnirpranftgyshgy
Low Complexity Region (SEG)
MGNNVSVMVLALLLLCSGITAAPSSASPAKIVSGFVSNGVSVLMKWLWSLktttktAITGRPMMKFESGYTVETVFDGSKLGIEPYSVEVLPGGELLILDSAnsnlyrissslslysrPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNMAIRKISDSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCAYQYGSSFPLGIAVLLAAGFFGYMLALLQRRVGTIVSSQNDHGTVNTSNSASPYQKPLKSVRPPLIPTeedegkqeeegffgSLAKLFANTESSVLEILRGIFPHLRKKTLSNQYPSLQKHSTSWPAQESFVIPHEDEPPSIDTRTPTPRKTYAFMSKDAEKIHQLRQSRAFYSGWDGDFqqqkqqhhhRYQSSTPNTYYEQSSEKTNEIVFGAIQEQGAKREAVVIKPVNYGDPIYDHQNIRPRANFTGYSHGY
Disordered region (IsUnstruct)
****VSVMVLALLLLCSGITAAPSSASPAKIVSGFVSNGVSVLMKWLWSLKTTTKTAITGRPMMKFESGYTVETVFDGSKLGIEPYSVEVLPGGELLILDSANSNLYRISSSLSLYS*******************************TVDDRGNIYIADTMNMAIRKISDSGVTTIAGGKWGRGGGHV******AKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCAYQYGSSFPLGIAVLLAAGFFGYMLALLQRRVGTIV*******************************************FFGSLAKLFANTESSVLEILRGIFPHLRKK*************************************************************AFYSGW********************************EIVFGAIQEQGAKREAVVIKPVNYGDPIYDHQNIR************
Disordered Region (DISOPRED)
**NNVSVMVLALLLLCSGITAAPSSASPAKIVSGFVSNGVSVLMKWLWSLKTTTKTAITGRPMMKFESGYTVETVFDGSKLGIEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNMAIRKISDSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCAYQYGSSFPLGIAVLLAAGFFGYMLALLQRRVGTIVSSQNDHGTVNTSNSASPYQKPLKSVRPPL****************GSLAKLFANTESSVLEILRGIF*********************WPA*ESFV************************************************************************************************PVNYGDPIYDHQNIRPRANF*******
Disordered Region (DISEMBL)
MGNNVSVMVLALLLLCSGITAAPSSASPAKIVSGFVSNGVSVLMKWLWSLKTTTKTAITGRPMMKFESGYTVETVFDGSKLGIEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNMAIRKISDSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCAYQYGSSFPLGIAVLLAAGFFGYMLALLQRRVGTIVSSQN*****************LKSVRPPLIPT*********EGFFGSLAKLFANTESSVLEILRGIFPHLRKKTLSNQY***********AQESFVIPHEDEPPSIDTRTPTPRKTYAFMSKDAEKIHQLRQSRAFYSGWDGD*************************EKTNEIVFGAIQEQGAKREAVVIKPVNYGDPIYDHQNIRPRANFTGYSHGY
Disordered Region (DISPRO)
*GNNVSVMVLALLLLCSGITAAPSSASPAKIVSGFVSNGVSVLMKWLWSLKTTTKTAITGRPMMKFESGYTVETVFDGSKLGIEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNMAIRKISDSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCAYQYGSSFPLGIAVLLAAGFFGYMLALLQRRVGTIVSSQ*****************PLKSVRPPLIPT**D*G***EEGFFGSLAKLFANTESSVLEILRGIFPHLRKKTL***********TSWPAQES***PHEDEPPSIDTR*PTPRKTYAFMSKDA******RQSRAFYSGWDGDFQQQKQQHHHRYQSSTPNTYYEQSSEKTNEIVFGAIQEQGAKREAVVIKPVNYGDPIYDHQNIRPRANFTGYSHG*
Transmembrane Helix (TMHMM)
iiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGNNVSVMVLALLLLCSGITAAPSSASPAKIVSGFVSNGVSVLMKWLWSLKTTTKTAITGRPMMKFESGYTVETVFDGSKLGIEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNMAIRKISDSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCAYQYGSSFPLGIAVLLAAGFFGYMLALLQRRVGTIVSSQNDHGTVNTSNSASPYQKPLKSVRPPLIPTEEDEGKQEEEGFFGSLAKLFANTESSVLEILRGIFPHLRKKTLSNQYPSLQKHSTSWPAQESFVIPHEDEPPSIDTRTPTPRKTYAFMSKDAEKIHQLRQSRAFYSGWDGDFQQQKQQHHHRYQSSTPNTYYEQSSEKTNEIVFGAIQEQGAKREAVVIKPVNYGDPIYDHQNIRPRANFTGYSHGY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	488
255560011	500	conserved hypothetical protein [Ricinus	0.940	0.918	0.804	0.0
224102017	494	predicted protein [Populus trichocarpa]	0.991	0.979	0.751	0.0
224108107	487	predicted protein [Populus trichocarpa]	0.973	0.975	0.772	0.0
356565931	493	PREDICTED: uncharacterized protein LOC10	0.944	0.935	0.741	0.0
147798773	491	hypothetical protein VITISV_022544 [Viti	0.993	0.987	0.773	0.0
225424717	491	PREDICTED: uncharacterized protein LOC10	0.993	0.987	0.773	0.0
356497860	508	PREDICTED: uncharacterized protein LOC10	0.959	0.921	0.714	0.0
356501873	507	PREDICTED: uncharacterized protein LOC10	0.954	0.919	0.692	0.0
296087695	811	unnamed protein product [Vitis vinifera]	0.987	0.594	0.669	1e-175
225452518	677	PREDICTED: uncharacterized protein LOC10	0.983	0.709	0.669	1e-175

>gi|255560011|ref|XP_002521024.1| conserved hypothetical protein [Ricinus communis] gi|223539861|gb|EEF41441.1| conserved hypothetical protein [Ricinus communis]

 Score =  748 bits (1930), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/465 (80%), Positives = 406/465 (87%), Gaps = 6/465 (1%)

Query: 29  AKIVSGFVSNGVSVLMKWLWSLKTTTKTAITGRPMMKFESGYTVETVFDGSKLGIEPYSV 88
           AKIVSGF SN +SV MKWLWSLK T+KTAI+GRPMMKFE GY VETVFDGSKLGIEPYSV
Sbjct: 37  AKIVSGFFSNALSVFMKWLWSLKATSKTAISGRPMMKFEGGYNVETVFDGSKLGIEPYSV 96

Query: 89  EVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGL 148
           EVLP GELLILDSANSN+YRISSSLSLYSRPKLVAGS +GYSGHVDGK REARMNHPKGL
Sbjct: 97  EVLPNGELLILDSANSNIYRISSSLSLYSRPKLVAGSPDGYSGHVDGKHREARMNHPKGL 156

Query: 149 TVDDRGNIYIADTMNMAIRKISDSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIG 208
           TVDDRGNIYIAD MNMAIRKISD+GVTTIAGGKWGRGG HVDG SEDAKFSNDFDVVYIG
Sbjct: 157 TVDDRGNIYIADAMNMAIRKISDAGVTTIAGGKWGRGGSHVDGASEDAKFSNDFDVVYIG 216

Query: 209 SSCSLLVIDRGNRAIREIQLHFDDCAYQYGSSFPLGIAVLLAAGFFGYMLALLQRRVGTI 268
           SSCSLLVIDRGNRAIREIQLHFDDCAYQY S FPLG+AVL+AAGFFGYMLALLQRRVG I
Sbjct: 217 SSCSLLVIDRGNRAIREIQLHFDDCAYQYESGFPLGVAVLVAAGFFGYMLALLQRRVGKI 276

Query: 269 VSSQNDHGTVNTSNSASPYQKPLKSVRPPLIPTEEDEGKQEEEGFFGSLAKLFANTESSV 328
           VSSQND   + TS S SPYQKPL+SVRPPLIPT EDE ++ EEGFFGSL KLFAN  + V
Sbjct: 277 VSSQNDRDAMKTSISGSPYQKPLRSVRPPLIPT-EDEQEKHEEGFFGSLGKLFANAGACV 335

Query: 329 LEILRGIFPHLRKKTLSNQYPS-LQKHSTSWPAQESFVIPHEDEPPSIDTRTPTPRKTYA 387
           +EIL GI P  RKK L+ QY S  QKHS++WP Q+SFVIP EDEPPSI+TRTPTP+KTY 
Sbjct: 336 VEILGGIVPGFRKKPLNYQYLSQQQKHSSTWPVQDSFVIPDEDEPPSIETRTPTPKKTYP 395

Query: 388 FMSKDAEKIHQLRQSRAFYSGWDGDF----QQQKQQHHHRYQSSTPNTYYEQSSEKTNEI 443
           FMSKDAEK+HQ RQ RAFYSGWD DF    QQQK QHHHRYQS+ P+TYYEQS EKTNEI
Sbjct: 396 FMSKDAEKMHQWRQGRAFYSGWDDDFQQQQQQQKHQHHHRYQSAIPHTYYEQSYEKTNEI 455

Query: 444 VFGAIQEQGAKREAVVIKPVNYGDPIYDHQNIRPRANFTGYSHGY 488
           VFGA+QEQ  KREA V+KPV+YGD +Y+ Q+IR R +  GYS+G+
Sbjct: 456 VFGAVQEQDGKREAAVVKPVDYGDSVYNQQSIRFRTSSMGYSNGF 500

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224102017|ref|XP_002312513.1| predicted protein [Populus trichocarpa] gi|222852333|gb|EEE89880.1| predicted protein [Populus trichocarpa]

 Score =  733 bits (1893), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/495 (75%), Positives = 411/495 (83%), Gaps = 11/495 (2%)

Query: 1   MGNNVSVMVLALLLLCSGITAAPSSASPAKIVSGFVSNGVSVLMKWLWSLKTTTKTAITG 60
           MG NV V+   +LL   G+T+ P++ SPAKIV G  SN VS LMKWLWSLK TTKT I+G
Sbjct: 4   MGKNVLVLCFIMLLFFGGVTSVPTTTSPAKIVGGLFSNVVSALMKWLWSLKATTKTVISG 63

Query: 61  RPMMKFESGYTVETVFDGSKLGIEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPK 120
           RPMMKFESGYTVETVFDGSKLGIEPYSV+VLP GELLILDSANSN+YRIS+SLSLYSRPK
Sbjct: 64  RPMMKFESGYTVETVFDGSKLGIEPYSVQVLPSGELLILDSANSNIYRISASLSLYSRPK 123

Query: 121 LVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNMAIRKISDSGVTTIAGG 180
           LVAGS EGYSGHVDGK REA+MNHPKGLTVDDRGNIY+ADTMNMAIRKISD+GVTTIAGG
Sbjct: 124 LVAGSHEGYSGHVDGKLREAKMNHPKGLTVDDRGNIYVADTMNMAIRKISDAGVTTIAGG 183

Query: 181 KWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCAYQYGSS 240
           KWGR G HVDG SEDA FSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCAYQYGS 
Sbjct: 184 KWGR-GSHVDGASEDANFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCAYQYGSG 242

Query: 241 FPLGIAVLLAAGFFGYMLALLQRRVGTIVSSQNDHGTVNTSNSASPYQKPLKSVRPPLIP 300
           FPLGIAVL+AAGFFGYMLALLQRRVG IVS QN   ++  S +  PYQKP+KS+RPPLIP
Sbjct: 243 FPLGIAVLVAAGFFGYMLALLQRRVGMIVSPQNV--SMKMSTTGIPYQKPIKSIRPPLIP 300

Query: 301 TEEDEGKQEEEGFFGSLAKLFANTESSVLEILRGIFPHLRKKTLSNQYPSLQKHS----- 355
           T EDE ++ EEG FGSL KLF NT +SV+EI  GI P  RKK +S QY + Q+       
Sbjct: 301 T-EDEQEKHEEGLFGSLGKLFINTGASVMEIFGGIVPSFRKKPVSYQYQNYQQQQYQHQK 359

Query: 356 --TSWPAQESFVIPHEDEPPSIDTRTPTPRKTYAFMSKDAEKIHQLRQSRAFYSGWDGDF 413
             +SWP Q+SFVIP EDEPPSI++RTPTPRKTY FMSKD EK+HQ RQ R+ YSGWDGD 
Sbjct: 360 QLSSWPVQDSFVIPDEDEPPSIESRTPTPRKTYPFMSKDTEKMHQWRQGRSIYSGWDGDL 419

Query: 414 QQQKQQHHHRYQSSTPNTYYEQSSEKTNEIVFGAIQEQGAKREAVVIKPVNYGDPIYDHQ 473
           QQQ+ QHHHRYQSSTP+TYYEQS EKTNEIVFGA+QEQ  K E +V KPV+YGDP + H 
Sbjct: 420 QQQQHQHHHRYQSSTPHTYYEQSYEKTNEIVFGAVQEQDGKYETMVTKPVDYGDPKHYHH 479

Query: 474 NIRPRANFTGYSHGY 488
           NIR R N   Y+ GY
Sbjct: 480 NIRSRTNSLHYAKGY 494

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224108107|ref|XP_002314724.1| predicted protein [Populus trichocarpa] gi|222863764|gb|EEF00895.1| predicted protein [Populus trichocarpa]

 Score =  732 bits (1890), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/483 (77%), Positives = 408/483 (84%), Gaps = 8/483 (1%)

Query: 1   MGNNVSVMVLALLLLCSGITAAPSSASPAKIVSGFVSNGVSVLMKWLWSLKTTTKTAITG 60
           MG NV V+   LLL   G+T+AP++ SPAKIVSG  SN V   MKWLWS+K+TTKT I+G
Sbjct: 7   MGKNVLVLCFILLLFFGGVTSAPTTTSPAKIVSGVFSNVVPAFMKWLWSMKSTTKTVISG 66

Query: 61  RPMMKFESGYTVETVFDGSKLGIEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPK 120
           RPMMKFESGYTVETVFDGSKLGIEPYSV+VLP GELLILDS NSN+YR+SSSLSLYSRPK
Sbjct: 67  RPMMKFESGYTVETVFDGSKLGIEPYSVQVLPSGELLILDSVNSNIYRMSSSLSLYSRPK 126

Query: 121 LVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNMAIRKISDSGVTTIAGG 180
           LVAGS EGYSGHVDGK REA+MNHPKGLTVDDRGNIYIADTMNMAIRKISD+GVTTIAGG
Sbjct: 127 LVAGSHEGYSGHVDGKLREAKMNHPKGLTVDDRGNIYIADTMNMAIRKISDAGVTTIAGG 186

Query: 181 KWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCAYQYGSS 240
           KWGR G HVDG SEDAKFSNDFDV+YIGSSCSLLVIDRGN+AIREIQLHFDDCAYQYGS 
Sbjct: 187 KWGR-GSHVDGASEDAKFSNDFDVLYIGSSCSLLVIDRGNQAIREIQLHFDDCAYQYGSG 245

Query: 241 FPLGIAVLLAAGFFGYMLALLQRRVGTIVSSQNDHGTVNTSNSASPYQKPLKSVRPPLIP 300
           FPLGIAVLLAAGFFGYMLALLQRRVG IVS QN    + TS + +PYQ P+KS RPPLIP
Sbjct: 246 FPLGIAVLLAAGFFGYMLALLQRRVGMIVSPQNV--AMETSTTGNPYQ-PIKSFRPPLIP 302

Query: 301 TEEDEGKQEEEGFFGSLAKLFANTESSVLEILRGIFPHLRKKTLSNQYPSLQKHSTSWPA 360
           T EDE ++ EEG FGSL KLF NT +S+ EIL GI P  RKK  + QY + Q+ STSWP 
Sbjct: 303 T-EDEQEKHEEGLFGSLGKLFINTWASIAEILGGIVPSFRKKPPNYQYQNYQQQSTSWPV 361

Query: 361 QESFVIPHEDEPPSIDTRTPTPRKTYAFMSKDAEKIHQLRQSRAFYSGWDGDF---QQQK 417
           Q+SFVIP EDEPPS +TRTPTPRKTY FMSKD EK+HQ RQSR+ YSGWDGDF   QQQK
Sbjct: 362 QDSFVIPDEDEPPSTETRTPTPRKTYPFMSKDTEKMHQWRQSRSIYSGWDGDFQQQQQQK 421

Query: 418 QQHHHRYQSSTPNTYYEQSSEKTNEIVFGAIQEQGAKREAVVIKPVNYGDPIYDHQNIRP 477
           QQ+HHRYQSSTP+TYYEQS EKTNEIVFGA+QEQ  K    VI PVNYGDPI++  NIR 
Sbjct: 422 QQYHHRYQSSTPHTYYEQSYEKTNEIVFGAVQEQDVKHGTTVILPVNYGDPIHNRHNIRS 481

Query: 478 RAN 480
           R N
Sbjct: 482 RTN 484

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356565931|ref|XP_003551189.1| PREDICTED: uncharacterized protein LOC100781836 [Glycine max]

 Score =  718 bits (1853), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/480 (74%), Positives = 404/480 (84%), Gaps = 19/480 (3%)

Query: 19  ITAAPSSASPAKIVSGFVSNGVSVLMKWLWSLKTTTKTAITGRPMMKFESGYTVETVFDG 78
           ++AAPS+ SPAKIV+GF+SN V    KW+WSLK TTKTA++ R MMKFESGY VETVFDG
Sbjct: 23  VSAAPSTTSPAKIVNGFLSNAVPAFTKWVWSLKATTKTAVSSRSMMKFESGYNVETVFDG 82

Query: 79  SKLGIEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPR 138
           SKLGIEPY+VEVLP GELLILDSANSN+YRISSSLSLYSRPKLVAGSAEGYSGHVDGK R
Sbjct: 83  SKLGIEPYAVEVLPNGELLILDSANSNIYRISSSLSLYSRPKLVAGSAEGYSGHVDGKLR 142

Query: 139 EARMNHPKGLTVDDRGNIYIADTMNMAIRKISDSGVTTIAGGKWGRGGGHVDGPSEDAKF 198
           EARMNHPKG+TVDDRGNIY+ADT NMAIRKISDSGVTTIAGGKW RGGGHVDGPSE+AKF
Sbjct: 143 EARMNHPKGITVDDRGNIYVADTTNMAIRKISDSGVTTIAGGKWNRGGGHVDGPSEEAKF 202

Query: 199 SNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCAYQYGSSFPLGIAVLLAAGFFGYML 258
           S+D DVVY+GSSCSLLVIDRGNRAIREIQLHFDDCAYQYGS FPLGIA+L+ AGFFGYML
Sbjct: 203 SDDLDVVYVGSSCSLLVIDRGNRAIREIQLHFDDCAYQYGSGFPLGIAMLVGAGFFGYML 262

Query: 259 ALLQRRVGTIVSSQNDHGTVNTSNSASPYQKPLKSVRPPLIPTEEDEGKQEEEGFFGSLA 318
           ALLQRR+GTIV+SQ            SPYQKPLKSVRPPLIP+E +  KQ EEGFFGSL 
Sbjct: 263 ALLQRRLGTIVASQE-------VIPPSPYQKPLKSVRPPLIPSEYEPDKQ-EEGFFGSLG 314

Query: 319 KLFANTESSVLEILRGIFPHLRKKTLSNQY---PSL---QKHSTSWPAQESFVIPHEDEP 372
           KL ANT +S++EI+ G+FP  R+K+L  Q+   P +   QK   +WP QESFVIP ED+P
Sbjct: 315 KLLANTGASMVEIIGGLFPSFRRKSLRYQFQRQPLIQQPQKQVNAWPVQESFVIPDEDQP 374

Query: 373 PSIDTRTPTPRKTYAFMSKDAEKIHQLRQSRAFYSGWDGDF----QQQKQQHHHRYQSST 428
           PSIDTR PTPRKTY FMSKDAEK+ QLRQSRAFYSGWDGD     QQQ++ H H+Y+SS 
Sbjct: 375 PSIDTRAPTPRKTYPFMSKDAEKMQQLRQSRAFYSGWDGDLQQQQQQQQKHHRHQYRSSI 434

Query: 429 PNTYYEQSSEKTNEIVFGAIQEQGAKREAVVIKPVNYGDPIYDHQNIRPRANFTGYSHGY 488
           P+TYYEQS E TNEIVFGA++EQ  K+E+VVIKPV+YG+ +Y+H NIR R +  GY + Y
Sbjct: 435 PHTYYEQSHETTNEIVFGAVEEQDRKQESVVIKPVDYGESMYEH-NIRSRMSSMGYGYRY 493

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147798773|emb|CAN69794.1| hypothetical protein VITISV_022544 [Vitis vinifera]

 Score =  704 bits (1816), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/494 (77%), Positives = 425/494 (86%), Gaps = 9/494 (1%)

Query: 1   MGNNVSVMVLALLLLCSGITAAPSSASPAKIVSGFVSNGVSVLMKWLWSLKTTTKTAITG 60
           MG +V V+VL L++L  G+++A ++ASPAKIV+GFVS+ V V+MKWLWSLK TTKTAI+ 
Sbjct: 1   MGKSVLVLVLTLVVLSGGVSSASATASPAKIVTGFVSDAVPVVMKWLWSLKATTKTAISS 60

Query: 61  RPMMKFESGYTVETVFDGSKLGIEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPK 120
           R MMKFESGYTVETVFDGSKLGIEPYS+EVL  GELLILDSANSNLY+ISSSLS Y+RPK
Sbjct: 61  RSMMKFESGYTVETVFDGSKLGIEPYSIEVLGSGELLILDSANSNLYKISSSLSQYTRPK 120

Query: 121 LVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNMAIRKISDSGVTTIAGG 180
           LV GSAEGYSGHVDG+ REARMNHPKGLTVDDRGNIY+ADT+NMAIRKISD+GVTTIAGG
Sbjct: 121 LVTGSAEGYSGHVDGRLREARMNHPKGLTVDDRGNIYVADTLNMAIRKISDAGVTTIAGG 180

Query: 181 KWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCAYQYGSS 240
           K GRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGN+AIREIQLHFDDCAYQYGS 
Sbjct: 181 KLGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNQAIREIQLHFDDCAYQYGSG 240

Query: 241 FPLGIAVLLAAGFFGYMLALLQRRVGTIVSSQNDHGTVNTSNSASPYQKPLKSVRPPLIP 300
           FPLGIAVL+AAGFFGYMLALLQRRVGTIVSS+ND    N S + S YQKPLKSVRPPLIP
Sbjct: 241 FPLGIAVLIAAGFFGYMLALLQRRVGTIVSSENDQA--NPSIAHSTYQKPLKSVRPPLIP 298

Query: 301 TEEDEGKQEEEGFFGSLAKLFANTESSVLEILRGIFPHLRKKTLS------NQYPSLQKH 354
           T EDE +++EEGFFGSL KLF    + + EI  G+ P L+KK  S        Y   QKH
Sbjct: 299 T-EDEMEKQEEGFFGSLGKLFVYAGACIAEIFGGMIPGLKKKPHSYQYQNQQNYQQPQKH 357

Query: 355 STSWPAQESFVIPHEDEPPSIDTRTPTPRKTYAFMSKDAEKIHQLRQSRAFYSGWDGDFQ 414
           S +WP QESFVIP EDEPPSIDTRTPTPRKTY FMSKDAEK+HQ+RQSRAF SGWDGDFQ
Sbjct: 358 SNAWPLQESFVIPDEDEPPSIDTRTPTPRKTYPFMSKDAEKMHQIRQSRAFVSGWDGDFQ 417

Query: 415 QQKQQHHHRYQSSTPNTYYEQSSEKTNEIVFGAIQEQGAKREAVVIKPVNYGDPIYDHQN 474
           QQ++QHHHR+ SSTP+TYYEQ+ EKTNEIVFGA+QEQ  +RE V IKPVNYGDPIYDH N
Sbjct: 418 QQQKQHHHRHYSSTPHTYYEQNCEKTNEIVFGAVQEQQVRREPVDIKPVNYGDPIYDHHN 477

Query: 475 IRPRANFTGYSHGY 488
           IR R +  GY+ GY
Sbjct: 478 IRSRIHSKGYTQGY 491

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225424717|ref|XP_002265467.1| PREDICTED: uncharacterized protein LOC100263777 [Vitis vinifera] gi|296086531|emb|CBI32120.3| unnamed protein product [Vitis vinifera]

 Score =  703 bits (1815), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/494 (77%), Positives = 425/494 (86%), Gaps = 9/494 (1%)

Query: 1   MGNNVSVMVLALLLLCSGITAAPSSASPAKIVSGFVSNGVSVLMKWLWSLKTTTKTAITG 60
           MG +V V+VL L++L  G+++A ++ASPAKIV+GFVS+ V V+MKWLWSLK TTKTAI+ 
Sbjct: 1   MGKSVLVLVLTLVVLSGGVSSASATASPAKIVTGFVSDAVPVVMKWLWSLKATTKTAISS 60

Query: 61  RPMMKFESGYTVETVFDGSKLGIEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPK 120
           R MMKFESGYTVETVFDGSKLGIEPYS+EVL  GELLILDSANSNLY+ISSSLS Y+RPK
Sbjct: 61  RSMMKFESGYTVETVFDGSKLGIEPYSIEVLGSGELLILDSANSNLYKISSSLSQYTRPK 120

Query: 121 LVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNMAIRKISDSGVTTIAGG 180
           LV GSAEGYSGHVDG+ REARMNHPKGLTVDDRGNIY+ADT+NMAIRKISD+GVTTIAGG
Sbjct: 121 LVTGSAEGYSGHVDGRLREARMNHPKGLTVDDRGNIYVADTLNMAIRKISDAGVTTIAGG 180

Query: 181 KWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCAYQYGSS 240
           K GRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGN+AIREIQLHFDDCAYQYGS 
Sbjct: 181 KLGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNQAIREIQLHFDDCAYQYGSG 240

Query: 241 FPLGIAVLLAAGFFGYMLALLQRRVGTIVSSQNDHGTVNTSNSASPYQKPLKSVRPPLIP 300
           FPLGIAVL+AAGFFGYMLALLQRRVGTIVSS+ND    N S + S YQKPLKSVRPPLIP
Sbjct: 241 FPLGIAVLIAAGFFGYMLALLQRRVGTIVSSENDQA--NPSIAHSTYQKPLKSVRPPLIP 298

Query: 301 TEEDEGKQEEEGFFGSLAKLFANTESSVLEILRGIFPHLRKKTLS------NQYPSLQKH 354
           T EDE +++EEGFFGSL KLF    + + EI  G+ P L+KK  S        Y   QKH
Sbjct: 299 T-EDEMERQEEGFFGSLGKLFVYAGACIAEIFGGMIPGLKKKPHSYQYQNQQNYQQPQKH 357

Query: 355 STSWPAQESFVIPHEDEPPSIDTRTPTPRKTYAFMSKDAEKIHQLRQSRAFYSGWDGDFQ 414
           S +WP QESFVIP EDEPPSIDTRTPTPRKTY FMSKDAEK+HQ+RQSRAF SGWDGDFQ
Sbjct: 358 SNAWPLQESFVIPDEDEPPSIDTRTPTPRKTYPFMSKDAEKMHQIRQSRAFVSGWDGDFQ 417

Query: 415 QQKQQHHHRYQSSTPNTYYEQSSEKTNEIVFGAIQEQGAKREAVVIKPVNYGDPIYDHQN 474
           QQ++QHHHR+ SSTP+TYYEQ+ EKTNEIVFGA+QEQ  +RE V IKPVNYGDPIYDH N
Sbjct: 418 QQQKQHHHRHYSSTPHTYYEQNCEKTNEIVFGAVQEQQVRREPVDIKPVNYGDPIYDHHN 477

Query: 475 IRPRANFTGYSHGY 488
           IR R +  GY+ GY
Sbjct: 478 IRSRIHSKGYTQGY 491

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356497860|ref|XP_003517774.1| PREDICTED: uncharacterized protein LOC100799483 [Glycine max]

 Score =  688 bits (1775), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/490 (71%), Positives = 393/490 (80%), Gaps = 22/490 (4%)

Query: 20  TAAPSSASPAKIVSGFVSNGVSVLMKWLWSLKTTTKTAITGRPMMKFESGYTVETVFDGS 79
           +AAPS+  PAKIVSGF+SN V    KW+WSLK  TKTAI  + MMKFESGYTVETVFDGS
Sbjct: 20  SAAPSTTLPAKIVSGFLSNAVPAFTKWVWSLKAPTKTAIGAKSMMKFESGYTVETVFDGS 79

Query: 80  KLGIEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPRE 139
           KLGIEPY+VEVLP GELLILDSANSN+YRISSSLSL SRPKLVAGSAEGYSGHVDG+ RE
Sbjct: 80  KLGIEPYAVEVLPNGELLILDSANSNIYRISSSLSLNSRPKLVAGSAEGYSGHVDGRFRE 139

Query: 140 ARMNHPKGLTVDDRGNIYIADTMNMAIRKISDSGVTTIAGGKWGRGGGHVDGPSEDAKFS 199
           ARMNHPKG+TVD+RGNIY+AD MNMAIRKISDSGVTTIAGGKW RGGGHVDGPSE+AKFS
Sbjct: 140 ARMNHPKGITVDNRGNIYVADIMNMAIRKISDSGVTTIAGGKWSRGGGHVDGPSEEAKFS 199

Query: 200 NDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCAYQYGSSFPLGIAVLLAAGFFGYMLA 259
           NDFDVVY+GSSCSLLVIDRGN+AIREIQLHFDDCAYQY + FPLGIAVL+ AGFFGYMLA
Sbjct: 200 NDFDVVYVGSSCSLLVIDRGNQAIREIQLHFDDCAYQYENGFPLGIAVLIGAGFFGYMLA 259

Query: 260 LLQRRVGTIVSSQNDHGTVNTSN-SASPYQKPLKSVRPPLIPTEEDEGKQEEEGFFGSLA 318
           LLQRR+GTIV+SQ+     + S  S SPYQKPL S RPPLIP+ EDE  ++EE FFGS+ 
Sbjct: 260 LLQRRLGTIVASQDVSAHSSMSGISPSPYQKPLNSARPPLIPS-EDESDKQEESFFGSIG 318

Query: 319 KLFANTESSVLEILRGIFPHLRK---KTLSNQYPSL----QKHSTSWPAQESFVIPHEDE 371
           KL  N  +SV+EI+  +FP  RK   ++   Q P L    QK   +WP QESFVIP EDE
Sbjct: 319 KLLTNAGASVVEIMGALFPGFRKNPPQSYEFQSPPLFQQPQKQVNAWPVQESFVIPDEDE 378

Query: 372 PPSIDTRTPTPRKTYAFMSKDAEKIHQLRQSRAFYSGWDGD-------------FQQQKQ 418
           PPSID RTPTPRKTYAFMSKDAEK+ QL QSRAFYSGWDGD              QQQ +
Sbjct: 379 PPSIDPRTPTPRKTYAFMSKDAEKMQQLWQSRAFYSGWDGDLQQQQQLKHQQQQQQQQLK 438

Query: 419 QHHHRYQSSTPNTYYEQSSEKTNEIVFGAIQEQGAKREAVVIKPVNYGDPIYDHQNIRPR 478
            H H+Y SS P+TYYEQS E+TNEIVFGA+QEQ  K+  VVIKPV+YG  +YDH  IRPR
Sbjct: 439 HHRHQYHSSVPHTYYEQSHEETNEIVFGAVQEQDGKKGTVVIKPVDYGQSVYDHHYIRPR 498

Query: 479 ANFTGYSHGY 488
            +  G+ + Y
Sbjct: 499 ISSMGHINKY 508

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356501873|ref|XP_003519748.1| PREDICTED: uncharacterized protein LOC100797570 [Glycine max]

 Score =  673 bits (1737), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/491 (69%), Positives = 385/491 (78%), Gaps = 25/491 (5%)

Query: 20  TAAPSSASPAKIVSGFVSNGVSVLMKWLWSLKTTTKTAITGRPMMKFESGYTVETVFDGS 79
           +AAPS+  PAKIVSGF+SN V    KW+WSLK  TKTAI  + MMKFESGYTVETVFDGS
Sbjct: 20  SAAPSTTLPAKIVSGFLSNAVPAFTKWVWSLKAPTKTAIGAKSMMKFESGYTVETVFDGS 79

Query: 80  KLGIEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPRE 139
           KLGIEPY+VEVL  GELLILDSANSN+YRISSSLSL +RPKLVAGSAEGYSGHVDG+ RE
Sbjct: 80  KLGIEPYAVEVLANGELLILDSANSNIYRISSSLSLNTRPKLVAGSAEGYSGHVDGRLRE 139

Query: 140 ARMNHPKGLTVDDRGNIYIADTMNMAIRKISDSGVTTIAGGKWGRGGGHVDGPSEDAKFS 199
           ARMNHPKG+ VD+RGNIYIAD MNMAIRKISDSGVTTIAGGKW RGGGH+DGPSE+AKFS
Sbjct: 140 ARMNHPKGIAVDNRGNIYIADIMNMAIRKISDSGVTTIAGGKWSRGGGHIDGPSEEAKFS 199

Query: 200 NDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCAYQYGSSFPLGIAVLLAAGFFGYMLA 259
           NDFDVVYIGSSCSLLVIDRGN+AIREIQLHFDDCAYQY +   LGIA+L+ AGFFGYMLA
Sbjct: 200 NDFDVVYIGSSCSLLVIDRGNQAIREIQLHFDDCAYQYENGLTLGIAMLVGAGFFGYMLA 259

Query: 260 LLQRRVGTIVSSQNDHGTVNTSNSASPYQKPLKSVRPPLIPTEEDEGKQEEEGFFGSLAK 319
           LLQ R+GTIV+SQ+  G   +  S SPYQKPLKSVRPPLIP+ EDE  ++EE F  S+ K
Sbjct: 260 LLQHRLGTIVASQD--GAAMSGISPSPYQKPLKSVRPPLIPS-EDESDKQEESFIRSIGK 316

Query: 320 LFANTESSVLEILRGIFPHLRKKTLSNQYPSL------QKHSTSWPAQESFVIPHEDEPP 373
           L  N  +SV+EI+  +FP  RKK  S ++ S       QK   +WP QESFVIP EDEPP
Sbjct: 317 LLTNAGASVVEIMGALFPGFRKKPQSYEFQSQPLFQQPQKQVNAWPVQESFVIPDEDEPP 376

Query: 374 SIDTRTPTPRKTYAFMSKDAEKIHQLRQSRAFYSGWDGD----------------FQQQK 417
           SID R+PTPRKTYAFMS+DAEK+ QL QS AFYSGW GD                 QQQ 
Sbjct: 377 SIDPRSPTPRKTYAFMSQDAEKMPQLWQSHAFYSGWGGDLQQQQQLKLQQQQQQQQQQQL 436

Query: 418 QQHHHRYQSSTPNTYYEQSSEKTNEIVFGAIQEQGAKREAVVIKPVNYGDPIYDHQNIRP 477
           + H H Y SS P+TYYEQS E+ NEIVFGA+QEQ  K+E VVIKPV+YG  +YDH  IRP
Sbjct: 437 KHHRHLYHSSVPHTYYEQSHEEINEIVFGAVQEQEGKKETVVIKPVDYGQSLYDHHYIRP 496

Query: 478 RANFTGYSHGY 488
           R +  G+ + Y
Sbjct: 497 RNSSMGHINKY 507

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296087695|emb|CBI34951.3| unnamed protein product [Vitis vinifera]

 Score =  620 bits (1598), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 338/505 (66%), Positives = 389/505 (77%), Gaps = 23/505 (4%)

Query: 1   MGNNVSVMVLALLLLCSGITAAPSSASPAKIVSGFVSNGVSVLMKWLWSLKTTTKTAITG 60
           M NN  V +  +L++  G ++  +S   AKIVSG VSN VS L+KWLWSLK+TT TAI+ 
Sbjct: 1   MRNNW-VGLFLILVVFGGFSSVSASPPVAKIVSGIVSNVVSALVKWLWSLKSTTNTAISS 59

Query: 61  RPMMKFESGYTVETVFDGSKLGIEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPK 120
           R  M FE GYTVETVFDGSKLGIEPYS+EV   GELL+LDS NSN+Y+ISS LS YSRPK
Sbjct: 60  RSKMNFEDGYTVETVFDGSKLGIEPYSLEVSTSGELLVLDSENSNIYKISSPLSRYSRPK 119

Query: 121 LVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNMAIRKISDSGVTTIAGG 180
           LVAGS +GYSGHVDGK REARMNHPKGLT+D+RGNIYIADTMNMAIRKISD+GVTTIAGG
Sbjct: 120 LVAGSPDGYSGHVDGKLREARMNHPKGLTMDERGNIYIADTMNMAIRKISDAGVTTIAGG 179

Query: 181 KWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCAYQYGSS 240
           KWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGN+AIREIQLH++DCAYQY  S
Sbjct: 180 KWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNQAIREIQLHYEDCAYQYNGS 239

Query: 241 FPLGIAVLLAAGFFGYMLALLQRRVGTIVSSQNDHGT-VNTSNSASPYQKPLKSVRPPLI 299
           F LGIAVL+AAGFFGYMLALLQRRV  + SSQ D  T +        YQ+PLKSVR PLI
Sbjct: 240 FHLGIAVLVAAGFFGYMLALLQRRVAAMFSSQYDSSTPMKKGMPPESYQRPLKSVRAPLI 299

Query: 300 PTEEDEGKQEEEGFFGSLAKLFANTESSVLEILRGIFPHLRKK------TLSNQYPSLQK 353
           PT EDE ++ +EGFFGSL +LF NT S++ EI  G+F   RKK            P++  
Sbjct: 300 PT-EDEYEKADEGFFGSLGRLFLNTGSTLAEIFGGLFSGSRKKPPHQQIQQQYGQPNV-- 356

Query: 354 HSTSWPAQESFVIPHEDEPPSIDTRTPTPRKTYAFMSKDAEKIHQLRQSRAFYS-GWDGD 412
           HS  WP QES+VIP EDEPPSI++R PTP+KTY FM+ + EK H  RQSR FYS GWDG+
Sbjct: 357 HSNGWPMQESYVIPDEDEPPSIESRAPTPKKTYPFMTPEMEKTHHFRQSRTFYSNGWDGN 416

Query: 413 ----------FQQQKQQHHHRYQSSTPNTYYEQSSEKTNEIVFGAIQEQGAKREAVVIKP 462
                      +QQ QQHH ++ SS P TYYEQS E  NEIVFGA+QEQ  +REA+VIK 
Sbjct: 417 YQQLQQKQIQQKQQYQQHHQKHYSSNPQTYYEQSCETKNEIVFGAVQEQDGRREAMVIKA 476

Query: 463 VNYGDPIYDHQNIRPRANFTG-YSH 486
           V+YGDP+Y+H NIRPR N+   YSH
Sbjct: 477 VDYGDPVYNHHNIRPRLNYMASYSH 501

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225452518|ref|XP_002274991.1| PREDICTED: uncharacterized protein LOC100266244 [Vitis vinifera]

 Score =  619 bits (1596), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 337/503 (66%), Positives = 390/503 (77%), Gaps = 23/503 (4%)

Query: 1   MGNNVSVMVLALLLLCSGITAAPSSASPAKIVSGFVSNGVSVLMKWLWSLKTTTKTAITG 60
           M NN  V +  +L++  G ++  +S   AKIVSG VSN VS L+KWLWSLK+TT TAI+ 
Sbjct: 1   MRNNW-VGLFLILVVFGGFSSVSASPPVAKIVSGIVSNVVSALVKWLWSLKSTTNTAISS 59

Query: 61  RPMMKFESGYTVETVFDGSKLGIEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPK 120
           R  M FE GYTVETVFDGSKLGIEPYS+EV   GELL+LDS NSN+Y+ISS LS YSRPK
Sbjct: 60  RSKMNFEDGYTVETVFDGSKLGIEPYSLEVSTSGELLVLDSENSNIYKISSPLSRYSRPK 119

Query: 121 LVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNMAIRKISDSGVTTIAGG 180
           LVAGS +GYSGHVDGK REARMNHPKGLT+D+RGNIYIADTMNMAIRKISD+GVTTIAGG
Sbjct: 120 LVAGSPDGYSGHVDGKLREARMNHPKGLTMDERGNIYIADTMNMAIRKISDAGVTTIAGG 179

Query: 181 KWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCAYQYGSS 240
           KWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGN+AIREIQLH++DCAYQY  S
Sbjct: 180 KWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNQAIREIQLHYEDCAYQYNGS 239

Query: 241 FPLGIAVLLAAGFFGYMLALLQRRVGTIVSSQNDHGTVNTSNSASPYQKPLKSVRPPLIP 300
           F LGIAVL+AAGFFGYMLALLQRRV  + SSQ  + +     +   YQ+PLKSVR PLIP
Sbjct: 240 FHLGIAVLVAAGFFGYMLALLQRRVAAMFSSQ--YVSDPAFFTLQSYQRPLKSVRAPLIP 297

Query: 301 TEEDEGKQEEEGFFGSLAKLFANTESSVLEILRGIFPHLRKK------TLSNQYPSLQKH 354
           T EDE ++ +EGFFGSL +LF NT S++ EI  G+F   RKK            P++  H
Sbjct: 298 T-EDEYEKADEGFFGSLGRLFLNTGSTLAEIFGGLFSGSRKKPPHQQIQQQYGQPNV--H 354

Query: 355 STSWPAQESFVIPHEDEPPSIDTRTPTPRKTYAFMSKDAEKIHQLRQSRAFYS-GWDGD- 412
           S  WP QES+VIP EDEPPSI++R PTP+KTY FM+ + EK H  RQSR FYS GWDG+ 
Sbjct: 355 SNGWPMQESYVIPDEDEPPSIESRAPTPKKTYPFMTPEMEKTHHFRQSRTFYSNGWDGNY 414

Query: 413 ---------FQQQKQQHHHRYQSSTPNTYYEQSSEKTNEIVFGAIQEQGAKREAVVIKPV 463
                     +QQ QQHH ++ SS P TYYEQS E  NEIVFGA+QEQ  +REA+VIK V
Sbjct: 415 QQLQQKQIQQKQQYQQHHQKHYSSNPQTYYEQSCETKNEIVFGAVQEQDGRREAMVIKAV 474

Query: 464 NYGDPIYDHQNIRPRANFTGYSH 486
           +YGDP+Y+H NIRPR N+ GYSH
Sbjct: 475 DYGDPVYNHHNIRPRLNYMGYSH 497

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	488
TAIR|locus:2016189	509	AT1G70280 "AT1G70280" [Arabido	0.975	0.935	0.582	9.6e-144
TAIR|locus:2199862	545	AT1G23880 "AT1G23880" [Arabido	0.959	0.858	0.552	2.2e-128
TAIR|locus:2147780	754	AT5G14890 [Arabidopsis thalian	0.938	0.607	0.459	6.4e-99
TAIR|locus:2099357	493	AT3G14860 "AT3G14860" [Arabido	0.866	0.858	0.349	5.9e-57
TAIR|locus:2199872	400	AT1G23890 "AT1G23890" [Arabido	0.350	0.427	0.443	6.5e-35

TAIR|locus:2016189 AT1G70280 "AT1G70280" [Arabidopsis thaliana (taxid:3702)]

 Score = 1405 (499.6 bits), Expect = 9.6e-144, P = 9.6e-144
 Identities = 299/513 (58%), Positives = 350/513 (68%)

Query:     1 MGNNVSVMVLALLLLCSGITAAPSSASPAKIVSGFVSNGVSVLMKWLWSLXXXXXXAITG 60
             MG +  V+ + +LLL   +++APS+ SPAKI++GF+SN  S LMKWLWSL       I  
Sbjct:     1 MGRDFLVLSILILLLSGIVSSAPSANSPAKILNGFISNHGSSLMKWLWSLKTTTKTTIAT 60

Query:    61 RPMMKFESGYTVETVFDGSKLGIEPYSVEVLPGGELLILDSAXXXXXXXXXXXXXXXXPK 120
             R M+KFE+GY+VETVFDGSKLGIEPYS+EVLP GELLILDS                 P+
Sbjct:    61 RSMVKFENGYSVETVFDGSKLGIEPYSIEVLPNGELLILDSENSNIYKISSSLSLYSRPR 120

Query:   121 LVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNMAIRKISDSGVTTIAGG 180
             LV GS EGY GHVDG+ R+A++NHPKGLTVDDRGNIY+ADT+N AIRKIS+ GVTTIAGG
Sbjct:   121 LVTGSPEGYPGHVDGRLRDAKLNHPKGLTVDDRGNIYVADTVNNAIRKISEGGVTTIAGG 180

Query:   181 KWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCAYQYGSS 240
             K  R GGHVDGPSEDAKFSNDFDVVY+GSSCSLLVIDRGN+AIREIQLHFDDCAYQYGS 
Sbjct:   181 KTVRNGGHVDGPSEDAKFSNDFDVVYVGSSCSLLVIDRGNKAIREIQLHFDDCAYQYGSG 240

Query:   241 FPLGIAVLLAAGFFGYMLALLQRRVGTIVSSQNDHGTVNTSNSASPYQKPLKSVRPPLIP 300
             FPLGIAVL+AAGFFGYMLALLQRRVG+IVSS ND         A P QKP+K  RP LIP
Sbjct:   241 FPLGIAVLVAAGFFGYMLALLQRRVGSIVSSHNDQEMFE----ADPDQKPMKHSRPSLIP 296

Query:   301 TXXXXXXXXXXXXXXSLAKLFANTESSVLEILRGIFPHLRKKTLSN--QYPSLQKHS--- 355
                            SL KL +N   SV+EILR      +K+T ++  QY    K S   
Sbjct:   297 AGDEQLEKQEETFVVSLGKLVSNAWESVMEILR------KKQTGTSFQQYHGTTKQSAAF 350

Query:   356 ---TSWPAQESFVIPHEDEPPSIDTRTPTPRKTYAFMSKDAEKIHQLRQSRAFYSGWDGD 412
                T WP QESFVI  ED PP ++ R PTPRKTYAFMSKDAEK+ QLRQSRAFYS WD +
Sbjct:   351 STSTPWPIQESFVIRDEDGPPPVEPRNPTPRKTYAFMSKDAEKMQQLRQSRAFYSSWDAE 410

Query:   413 FXXXXXXXXXRYQ----------------SSTPNTYYEQSSEKTNEIVFGAIQEQGAKRE 456
             F         ++Q                SS P+TYYEQ SEK+NEIVFGA+QEQ +KR 
Sbjct:   411 FPNQQQQQQKQHQKHQHQQQQQQQHRRHYSSIPHTYYEQDSEKSNEIVFGAVQEQSSKRV 470

Query:   457 AVVI-KPVNYGDPIYDHQNIRPRANFTGYSHGY 488
             A    KP+  GD +  + N +   ++  +S  Y
Sbjct:   471 AKPKPKPIESGDQM--NNNTQQNLHYRSHSVSY 501

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA

GO:0009086 "methionine biosynthetic process" evidence=RCA

TAIR|locus:2199862 AT1G23880 "AT1G23880" [Arabidopsis thaliana (taxid:3702)]

 Score = 1260 (448.6 bits), Expect = 2.2e-128, P = 2.2e-128
 Identities = 278/503 (55%), Positives = 331/503 (65%)

Query:     1 MGNNVSVMVLALLLLCSGITAAPSSASPAKIVSGFVSNGVSVLMKWLWSLX--XXXXXAI 58
             M  +   + + +LL  + + +APSS SPAKIV+ F+SN  + L+KWLWSL        A+
Sbjct:    61 MSRHFLFLGIIILLFSAFVASAPSSTSPAKIVNSFISNHGTSLLKWLWSLSFKTTTKTAV 120

Query:    59 TGRPMMKFESGYTVETVFDGSKLGIEPYSVEVLPGGELLILDSAXXXXXXXXXXXXXXXX 118
               + M+KFE+GY+VETV DGSKLGIEPYS++VL  GELLILDS                 
Sbjct:   121 PTKSMVKFENGYSVETVLDGSKLGIEPYSIQVLSNGELLILDSQNSNIYQISSSLSLYSR 180

Query:   119 PKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNMAIRKISDSGVTTIA 178
             P+LV GS EGY GHVDG+ R+AR+N+PKGLTVDDRGNIY+ADT+N AIRKIS++GVTTIA
Sbjct:   181 PRLVTGSPEGYPGHVDGRLRDARLNNPKGLTVDDRGNIYVADTVNNAIRKISEAGVTTIA 240

Query:   179 GGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCAYQYG 238
             GGK  RGGGHVDGPSEDAKFSNDFDVVY+GSSCSLLVIDRGN+AIREIQLHFDDCA QYG
Sbjct:   241 GGKMVRGGGHVDGPSEDAKFSNDFDVVYLGSSCSLLVIDRGNQAIREIQLHFDDCADQYG 300

Query:   239 SSFPLGIAVLLAAGFFGYMLALLQRRVGTIVSSQNDHGTVNTSNSASPYQKPLKSVRPPL 298
             S FPLGIAVL+AA FFGYMLALLQRR+ +IVS   D         A P Q P+K VRPPL
Sbjct:   301 SGFPLGIAVLVAAVFFGYMLALLQRRLSSIVSYHTDQEVFE----AVPDQDPIKPVRPPL 356

Query:   299 IPTXXXXXXXXXXXXXXSLAKLFANTESSVLEILRGIFPHLRKK-TLSNQYPSLQ-KHS- 355
             I T              +L    +N     +E+  G+FP LRKK T+   +   + KHS 
Sbjct:   357 ILTGDEQEKQEESFLG-TLQIFISNAWVFSVELFSGMFPGLRKKQTVGLNFNHQETKHSA 415

Query:   356 ---TSWPAQESFVIPHEDEPPSIDTRTPTPRKTYAFMSKDA-EKIHQLRQSRAFYSGWDG 411
                TSWP QESFVI ++DEPP +++R  TP K Y FMSKDA EK+ QLRQSRA Y   D 
Sbjct:   416 FSTTSWPIQESFVIHNKDEPPPVESRNATPGKIYPFMSKDATEKMQQLRQSRALYRSLDA 475

Query:   412 DFXXXXXXXXX-----RYQSSTPNTYYEQSSEKTNEIVFGAIQEQGAKREAVVIKPVNYG 466
             +F              R+ S+ P T YEQSSEKTNEIVFG  QEQ               
Sbjct:   476 EFLQEQQQEKHQQYHHRHHSTIPYTLYEQSSEKTNEIVFGPGQEQ--------------- 520

Query:   467 DPIYDHQNIRPRAN-FTGYSHGY 488
             D +  HQNI  RA+ F  Y +GY
Sbjct:   521 DQMNTHQNIHHRAHQFVSYPYGY 543

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2147780 AT5G14890 [Arabidopsis thaliana (taxid:3702)]

 Score = 982 (350.7 bits), Expect = 6.4e-99, P = 6.4e-99
 Identities = 232/505 (45%), Positives = 307/505 (60%)

Query:     1 MGNNVSVMVLALLLL---CSGITAAPSSASPAKIVSGFVSNGVSVLMKWLWSLXXXXXXA 57
             M  N ++++L ++ +   C G+++  +   P KIVSG V+N  S+L KWLWSL       
Sbjct:     1 MRKNANLLILFMIFMFFFC-GLSSVSAKPPPVKIVSGLVTNVASILWKWLWSLQTSTTTT 59

Query:    58 IT------GRPMMKFESGYTVETVFDGSKLGIEPYSVEVLP-GGELLILDSAXXXXXXXX 110
              T       R M+K+ESGY +ETVFDGSKLGIEPY++EV P GGEL++LDS         
Sbjct:    60 TTTKSGVSSRSMVKYESGYNMETVFDGSKLGIEPYAIEVSPNGGELIVLDSENSNIHKIS 119

Query:   111 XXXXXXXXPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNMAIRKIS 170
                     PKL++GS EGY+GHVDGK +EARMN P+GL +DDRGNIY+ADT+NMAIRKIS
Sbjct:   120 MPLSRYGKPKLLSGSQEGYTGHVDGKLKEARMNRPRGLAMDDRGNIYVADTINMAIRKIS 179

Query:   171 DSGVTTIA-GGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLH 229
             D GV+TIA GG+W   GG  +   E  +FS+DFD++Y+ SSCSLLVIDRGN+ I+EIQLH
Sbjct:   180 DDGVSTIAAGGRWS--GGSKE---ESMRFSDDFDLIYVSSSCSLLVIDRGNQLIKEIQLH 234

Query:   230 FDDCAYQYGS--SFPLGIAVLLAAGFFGYMLALLQRRVGTIVSSQNDHGT-----VNT-S 281
               DC+       S  LG A+L+AA FFGYMLALL RRV ++ SS + H T     V T S
Sbjct:   235 DHDCSQPEPDTDSLHLGTALLVAAVFFGYMLALLVRRVRSLFSSSS-HDTKSKRHVATPS 293

Query:   282 NSASPYQKPLKSVRPPLIPTXXXXXXXXXXXXXXSLAKLFANTESSVLEILRGIFPHLRK 341
              + +PYQ+  + VR PLIP               SL KL   T SSV E++ G    +  
Sbjct:   294 MTMAPYQRYPRPVRQPLIPPQHESEKEEGFLG--SLGKLVVKTGSSVSEMMSGSRNVIPP 351

Query:   342 KTLSNQYPSLQKHSTSWPAQESFVIPHEDEPPSIDTRTPT-PRKTYAFMSKDAEKIHQLR 400
                 +QY   Q+    WP QESF IP ED PP+++ R+ T P K Y        +     
Sbjct:   352 NF--HQYHH-QQEPNQWPVQESFAIPEEDGPPALEPRSGTNPDKPYL-------RAQGTN 401

Query:   401 QSRAFYSGWDGDFXXXXXXXXXRYQSSTPNTYYEQSSEKTNEIVFGAIQEQGAKREAVVI 460
             Q+R++Y  +D            R  + T +  +E + EK NEIVFGA+QEQ  +REA+VI
Sbjct:   402 QNRSYYQDYD-----QYQNQQKRNVNDTAS--FEDNREK-NEIVFGAVQEQDGRREAMVI 453

Query:   461 KPVNYGDPIYDHQNIRPRANFTGYS 485
             K V++ + I D +N+RPR N+ GYS
Sbjct:   454 KAVDFNEAINDQRNLRPRINYMGYS 478

GO:0005576 "extracellular region" evidence=ISM

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

TAIR|locus:2099357 AT3G14860 "AT3G14860" [Arabidopsis thaliana (taxid:3702)]

 Score = 586 (211.3 bits), Expect = 5.9e-57, P = 5.9e-57
 Identities = 161/461 (34%), Positives = 231/461 (50%)

Query:    33 SGFVSNGVSVLMKWLWSLXXXXXXAITGRPMMKFESGYTVETVFDGSKLGIEPYSVEVLP 92
             SG +   +S ++KW          + T   +++FE+GY VETV +G+ +G+ PY + V  
Sbjct:    42 SGSLIKHMSSVLKWTTGSSSKLSQSDTN--VLQFENGYLVETVVEGNDIGVVPYKIRVSD 99

Query:    93 GGELLILDSAXXXXXXXXXXXXXXXXPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDD 152
              GEL  +D                   +LVAGS +G +GH DGKP EAR NHP+G+T+DD
Sbjct:   100 DGELYAVDELNSNIMKITPPLSQYSRGRLVAGSFQGKTGHADGKPSEARFNHPRGVTMDD 159

Query:   153 RGNIYIADTMNMAIRKISDSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCS 212
             +GN+Y+ADT+N+AIRKI DSGVTTIAGGK     G+ DGPSEDAKFSNDFDVVY+  +CS
Sbjct:   160 KGNVYVADTLNLAIRKIGDSGVTTIAGGK-SNIAGYRDGPSEDAKFSNDFDVVYVRPTCS 218

Query:   213 LLVIDRGNRAIREIQLHFDDCAYQYGSSFPL-GIAVLLAAGFFGYMLALLQRRVGTIVSS 271
             LLVIDRGN A+R+I L  +DC YQ  SS  L  I +++ A   GY   +LQ+  G    S
Sbjct:   219 LLVIDRGNAALRQISLSEEDCDYQDDSSISLTDILLVIGAVLIGYATCMLQQGFGNSFFS 278

Query:   272 QNDHGTVNTSNSASPYQKPL-KSVRPPLIPTXXXXXXXXXXXXXXSLAKLFANTESSVLE 330
             +   G+  +     P ++ L + V    I T               L KL     +S L 
Sbjct:   279 KTQVGSETSYEEEHPGKEKLSRPVHEKTI-TKEEPGWPSFGQLLTDLCKLALEFITSHLV 337

Query:   331 ILR-GIFPHLR--KKTL-----SNQYPSLQKHSTSWPAQESFVIPHEDEPPSIDT--RTP 380
               R    P+LR  K  L       + P +Q+H+   P  ES    H   P + D+     
Sbjct:   338 PARFQTNPNLRPLKDRLIMPEDEQEPPRVQRHTAPAPISES---RHAHLPKADDSYPEHK 394

Query:   381 TPRKTYAFMSKD----AEKIHQLRQSRAFYSGWDGDFXXXXXXXXXRYQSSTPNTYYEQS 436
             TP+   + + KD    + K H+    R  Y+     F           + + P  + E+S
Sbjct:   395 TPKLRSSSVMKDPTLSSSKHHRTSSKRQDYA----QFYASG-------EVAQPKIHKERS 443

Query:   437 SEKTNEIVFGAIQEQGAKREAVVIKPVNYGDPI-YDHQNIR 476
               +  +      + +     +  +KPV Y +   +DH N+R
Sbjct:   444 RRRHRD---KTTETEPKPTPSDTVKPVEYSNSSKFDHYNMR 481

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA

GO:0009086 "methionine biosynthetic process" evidence=RCA

GO:0009616 "virus induced gene silencing" evidence=RCA

GO:0010050 "vegetative phase change" evidence=RCA

TAIR|locus:2199872 AT1G23890 "AT1G23890" [Arabidopsis thaliana (taxid:3702)]

 Score = 378 (138.1 bits), Expect = 6.5e-35, P = 6.5e-35
 Identities = 79/178 (44%), Positives = 108/178 (60%)

Query:    58 ITGRPMMKFESGYTVETVFDGSKLGIEPYSVEVLPGGE-LLILDSAXXXXXXXXXXXXXX 116
             ++G+ ++  E GY V TV DG K G+ PY++  LPG   L++LDS+              
Sbjct:    19 VSGKIVL--EEGYEVTTVVDGHKSGLNPYTIHALPGSSNLIVLDSSGSTFYTTSFPLSVD 76

Query:   117 XXPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNMAIRKISDSG-VT 175
                   AG  +G SGHVDGK   +R + P+G  VD +GN+Y+AD  N AIRKIS SG VT
Sbjct:    77 SVINRFAG--DGSSGHVDGKAGNSRFSKPRGFAVDAKGNVYVADKSNKAIRKISSSGSVT 134

Query:   176 TIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDC 233
             TIAGG   +  GH DGP+++A FS+DF++ ++   C LLV D GN  IR+I L  +DC
Sbjct:   135 TIAGGI-SKAFGHRDGPAQNATFSSDFEITFVPQRCCLLVSDHGNEMIRQINLKEEDC 191


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.134   0.397    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      488       443   0.00090  118 3  11 22  0.42    34
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  615 (65 KB)
  Total size of DFA:  263 KB (2140 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  34.01u 0.12s 34.13t   Elapsed:  00:00:02
  Total cpu time:  34.01u 0.12s 34.13t   Elapsed:  00:00:02
  Start:  Fri May 10 03:26:24 2013   End:  Fri May 10 03:26:26 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	488
PLN02919	1057	PLN02919, PLN02919, haloacid dehalogenase-like hyd	7e-07
pfam01436	28	pfam01436, NHL, NHL repeat	1e-04
PLN02919	1057	PLN02919, PLN02919, haloacid dehalogenase-like hyd	0.003

>gnl|CDD|215497 PLN02919, PLN02919, haloacid dehalogenase-like hydrolase family protein

 Score = 51.8 bits (124), Expect = 7e-07
 Identities = 47/148 (31%), Positives = 71/148 (47%), Gaps = 19/148 (12%)

Query: 95  ELLILDSANSNLYRISSSLSLYSR-PKLVAGSAEGYS------GHVDGKPREARMNHPKG 147
           EL I DS +S++     +L L +   +L+AG    +S      G  DG   E  + HP G
Sbjct: 753 ELYIADSESSSI----RALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLG 808

Query: 148 LTVDDRGNIYIADTMNMAIRKI--SDSGVTTIAG-GKWGRGGGHVDGPSEDAKFSNDFDV 204
           +     G IY+AD+ N  I+K+  +   VTT+AG GK     G  DG +  A+ S    +
Sbjct: 809 VLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGK----AGFKDGKALKAQLSEPAGL 864

Query: 205 VYIGSSCSLLVIDRGNRAIREIQLHFDD 232
             +G +  L V D  N  IR + L+  +
Sbjct: 865 A-LGENGRLFVADTNNSLIRYLDLNKGE 891

Length = 1057

>gnl|CDD|110440 pfam01436, NHL, NHL repeat

 Score = 38.5 bits (91), Expect = 1e-04
 Identities = 10/27 (37%), Positives = 17/27 (62%)

Query: 143 NHPKGLTVDDRGNIYIADTMNMAIRKI 169
           N P G+ VD  G++Y+AD+ N  ++  
Sbjct: 2   NRPHGVAVDSDGDVYVADSENHRVQVF 28

The NHL (NCL-1, HT2A and LIN-41) repeat is found in multiple tandem copies. It is about 40 residues long and resembles the WD repeat pfam00400. The repeats have a catalytic activity in bovine PAM (peptidyl-glycine alpha-amidating monooxygenase), proteolysis has shown that the Peptidyl-alpha-hydroxyglycine alpha-amidating lyase (PAL) activity is localised to the repeats. Human E3 ubiquitin-protein ligase TRIM32 interacts with the activation domain of Tat. This interaction is me diated by the NHL repeats. Length = 28

>gnl|CDD|215497 PLN02919, PLN02919, haloacid dehalogenase-like hydrolase family protein

 Score = 39.8 bits (93), Expect = 0.003
 Identities = 23/74 (31%), Positives = 42/74 (56%), Gaps = 5/74 (6%)

Query: 94  GELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDR 153
           G++ + DS N  + ++  +     R   +AG+  G +G  DGK  +A+++ P GL + + 
Sbjct: 815 GQIYVADSYNHKIKKLDPATK---RVTTLAGT--GKAGFKDGKALKAQLSEPAGLALGEN 869

Query: 154 GNIYIADTMNMAIR 167
           G +++ADT N  IR
Sbjct: 870 GRLFVADTNNSLIR 883

Length = 1057

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	488
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.76
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.74
KOG4659	1899	consensus Uncharacterized conserved protein (Rhs f	99.52
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.4
KOG4659	1899	consensus Uncharacterized conserved protein (Rhs f	99.38
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.27
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	98.79
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	98.77
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	98.75
KOG1520	376	consensus Predicted alkaloid synthase/Surface muci	98.58
PF01436	28	NHL: NHL repeat; InterPro: IPR001258 The NHL repea	98.5
COG3391	381	Uncharacterized conserved protein [Function unknow	98.49
COG3391	381	Uncharacterized conserved protein [Function unknow	98.42
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	98.37
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	98.33
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	98.3
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	98.25
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	98.22
PF01436	28	NHL: NHL repeat; InterPro: IPR001258 The NHL repea	98.18
PRK11028	330	6-phosphogluconolactonase; Provisional	98.07
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	98.04
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	98.02
KOG1214	1289	consensus Nidogen and related basement membrane pr	97.94
PRK11028	330	6-phosphogluconolactonase; Provisional	97.86
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	97.8
KOG1520	376	consensus Predicted alkaloid synthase/Surface muci	97.79
KOG1214	1289	consensus Nidogen and related basement membrane pr	97.78
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	97.65
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	97.39
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	97.25
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.1
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	96.97
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	96.93
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	96.87
PF05787	524	DUF839: Bacterial protein of unknown function (DUF	96.82
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	96.66
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	96.4
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	96.35
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	96.28
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	96.23
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	96.13
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	95.82
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	95.69
PF13449	326	Phytase-like: Esterase-like activity of phytase	95.23
COG2133	399	Glucose/sorbosone dehydrogenases [Carbohydrate tra	95.23
PF01731	86	Arylesterase: Arylesterase; InterPro: IPR002640 Th	95.22
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	95.17
TIGR03032	335	conserved hypothetical protein TIGR03032. This pro	95.07
COG3211	616	PhoX Predicted phosphatase [General function predi	94.86
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	94.79
PF00058	42	Ldl_recept_b: Low-density lipoprotein receptor rep	94.73
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	94.6
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	94.48
COG2133	399	Glucose/sorbosone dehydrogenases [Carbohydrate tra	94.36
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	94.3
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	94.26
KOG0266	456	consensus WD40 repeat-containing protein [General	94.11
smart00135	43	LY Low-density lipoprotein-receptor YWTD domain. T	93.91
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	93.02
PF01731	86	Arylesterase: Arylesterase; InterPro: IPR002640 Th	92.88
smart00135	43	LY Low-density lipoprotein-receptor YWTD domain. T	92.72
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	92.62
PF05787	524	DUF839: Bacterial protein of unknown function (DUF	92.47
PRK02888	635	nitrous-oxide reductase; Validated	92.33
PF13449	326	Phytase-like: Esterase-like activity of phytase	92.28
KOG1215	877	consensus Low-density lipoprotein receptors contai	91.99
PF00058	42	Ldl_recept_b: Low-density lipoprotein receptor rep	91.56
PF14269	299	Arylsulfotran_2: Arylsulfotransferase (ASST)	91.47
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	91.33
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	89.76
KOG0266	456	consensus WD40 repeat-containing protein [General	89.26
COG3211	616	PhoX Predicted phosphatase [General function predi	88.35
KOG0286	343	consensus G-protein beta subunit [General function	87.43
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	87.34
PF06739	38	SBBP: Beta-propeller repeat; InterPro: IPR010620 T	87.31
PRK02888	635	nitrous-oxide reductase; Validated	87.0
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	86.45
PTZ00421	493	coronin; Provisional	86.19
KOG3567	501	consensus Peptidylglycine alpha-amidating monooxyg	85.71
KOG0318	603	consensus WD40 repeat stress protein/actin interac	84.58
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	84.53
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	84.42
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	83.92
KOG1215	877	consensus Low-density lipoprotein receptors contai	83.36
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	83.16
TIGR03032	335	conserved hypothetical protein TIGR03032. This pro	82.83
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	81.86
KOG0279	315	consensus G protein beta subunit-like protein [Sig	81.49
PF06739	38	SBBP: Beta-propeller repeat; InterPro: IPR010620 T	81.46
KOG0263	707	consensus Transcription initiation factor TFIID, s	80.67

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.76  E-value=3.4e-17  Score=190.67  Aligned_cols=195  Identities=25%  Similarity=0.347  Sum_probs=142.8

Q ss_pred             CCCcceeccc---cccceeccceeEEeeecCcce--EEeCCCcccccCCceeEEeecCCCCCCCceEEEEccCCc-EEEE
Q 011333           26 ASPAKIVSGF---VSNGVSVLMKWLWSLKTTTKT--AITGRPMMKFESGYTVETVFDGSKLGIEPYSVEVLPGGE-LLIL   99 (488)
Q Consensus        26 s~P~~iv~g~---~~~~a~~~~~~i~~~~~~t~~--~iaG~~~~~~~dG~~~~~~~~G~~~l~~P~GIaVd~dG~-LYVa   99 (488)
                      ..|..+....   ...+++..+++||.++..++.  .++|.+.....+|..     .....+..|.||+++++|. |||+
T Consensus       683 n~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~-----~~~~~~~~P~GIavspdG~~LYVA  757 (1057)
T PLN02919        683 NSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSS-----GTSTSFAQPSGISLSPDLKELYIA  757 (1057)
T ss_pred             CCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCc-----cccccccCccEEEEeCCCCEEEEE
Confidence            3555554433   234677888999988766554  345543222112211     1123456899999999987 9999


Q ss_pred             ECCCCeEEEEeCCCCcccccEEEecCCC------CccccCCCcccccccCCcceEEEcCCCcEEEEECCCCEEEEEc-C-
Q 011333          100 DSANSNLYRISSSLSLYSRPKLVAGSAE------GYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNMAIRKIS-D-  171 (488)
Q Consensus       100 D~~n~rI~kid~~g~~~g~i~tvaG~~~------G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~N~rIrkid-~-  171 (488)
                      |..+++|++++.++   +...+++|...      ...|..+|.+..+.|++|.||++|++|+|||||+.|++|++|+ + 
T Consensus       758 Ds~n~~Irv~D~~t---g~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~t  834 (1057)
T PLN02919        758 DSESSSIRALDLKT---GGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPAT  834 (1057)
T ss_pred             ECCCCeEEEEECCC---CcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCC
Confidence            99999999999875   34455554210      1223345666678899999999999999999999999999999 3 


Q ss_pred             CCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCc
Q 011333          172 SGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDD  232 (488)
Q Consensus       172 ggVttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g~~  232 (488)
                      +.+++++|.+.   .|+.||....++|+.|.+|+ ++++|+|||+|++|++|++|++....
T Consensus       835 g~v~tiaG~G~---~G~~dG~~~~a~l~~P~GIa-vd~dG~lyVaDt~Nn~Irvid~~~~~  891 (1057)
T PLN02919        835 KRVTTLAGTGK---AGFKDGKALKAQLSEPAGLA-LGENGRLFVADTNNSLIRYLDLNKGE  891 (1057)
T ss_pred             CeEEEEeccCC---cCCCCCcccccccCCceEEE-EeCCCCEEEEECCCCEEEEEECCCCc
Confidence            44788887421   45678888899999999999 78899999999999999999987643

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.74  E-value=2.3e-16  Score=183.75  Aligned_cols=228  Identities=17%  Similarity=0.242  Sum_probs=157.0

Q ss_pred             CCCCCcceeccc---cccceeccceeEEeeecCcce--EEeCCCcccc--cCCceeEEeecCCCCCCCceEEEEcc-CCc
Q 011333           24 SSASPAKIVSGF---VSNGVSVLMKWLWSLKTTTKT--AITGRPMMKF--ESGYTVETVFDGSKLGIEPYSVEVLP-GGE   95 (488)
Q Consensus        24 a~s~P~~iv~g~---~~~~a~~~~~~i~~~~~~t~~--~iaG~~~~~~--~dG~~~~~~~~G~~~l~~P~GIaVd~-dG~   95 (488)
                      ....|..+....   ...+++..++.|++++..+..  +++|++....  .+|..     .....++.|++|++++ +|.
T Consensus       622 ~f~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~-----~~~~~ln~P~gVa~dp~~g~  696 (1057)
T PLN02919        622 TFNRPQGLAYNAKKNLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKK-----GTSQVLNSPWDVCFEPVNEK  696 (1057)
T ss_pred             ccCCCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChh-----hhHhhcCCCeEEEEecCCCe
Confidence            345577666543   234677788999988766544  5666654321  11111     0112367999999999 788


Q ss_pred             EEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCC-cccccccCCcceEEEcCCCc-EEEEECCCCEEEEEc--C
Q 011333           96 LLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDG-KPREARMNHPKGLTVDDRGN-IYIADTMNMAIRKIS--D  171 (488)
Q Consensus        96 LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG-~a~~a~Ln~P~GIAvD~dG~-LYVAD~~N~rIrkid--~  171 (488)
                      |||+|.++++|++++..+   +.+.+++|.  |.....+| ....+.|+.|+||+++++|. |||+|..|++|++++  .
T Consensus       697 LyVad~~~~~I~v~d~~~---g~v~~~~G~--G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~t  771 (1057)
T PLN02919        697 VYIAMAGQHQIWEYNISD---GVTRVFSGD--GYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKT  771 (1057)
T ss_pred             EEEEECCCCeEEEEECCC---CeEEEEecC--CccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCC
Confidence            999999999999999876   556677765  22222222 23345789999999999986 999999999999999  3


Q ss_pred             CCcEEEeCCccC-----CCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCceEEec---------
Q 011333          172 SGVTTIAGGKWG-----RGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCAYQY---------  237 (488)
Q Consensus       172 ggVttIaGg~~g-----~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g~~~~~~~---------  237 (488)
                      +++++++|+...     ...|..+|....+.|..|.+|+ ++++|+|||+|++|++|++|++.+..+....         
T Consensus       772 g~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gva-vd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~d  850 (1057)
T PLN02919        772 GGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVL-CAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKD  850 (1057)
T ss_pred             CcEEEEEecccccCcccccccCCCCchhhhhccCCceee-EeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCC
Confidence            456666654221     1134456666778899999999 7899999999999999999999765443322         


Q ss_pred             ------cCCCcceEEEEecCCceEEEEEEEEec
Q 011333          238 ------GSSFPLGIAVLLAAGFFGYMLALLQRR  264 (488)
Q Consensus       238 ------~~g~P~GIav~~g~g~~Gy~~a~l~~~  264 (488)
                            .+..|.||+++..+  .-|+......+
T Consensus       851 G~~~~a~l~~P~GIavd~dG--~lyVaDt~Nn~  881 (1057)
T PLN02919        851 GKALKAQLSEPAGLALGENG--RLFVADTNNSL  881 (1057)
T ss_pred             CcccccccCCceEEEEeCCC--CEEEEECCCCE
Confidence                  12369999998542  23444433333

>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]

Probab=99.52  E-value=6.3e-14  Score=158.08  Aligned_cols=183  Identities=16%  Similarity=0.265  Sum_probs=132.9

Q ss_pred             ceeccceeEEeeecCcce-------EEeCCCccc--ccCCceeEEeecCCCCCCCceEEEEccCCcEEEEECCCCeEEEE
Q 011333           39 GVSVLMKWLWSLKTTTKT-------AITGRPMMK--FESGYTVETVFDGSKLGIEPYSVEVLPGGELLILDSANSNLYRI  109 (488)
Q Consensus        39 ~a~~~~~~i~~~~~~t~~-------~iaG~~~~~--~~dG~~~~~~~~G~~~l~~P~GIaVd~dG~LYVaD~~n~rI~ki  109 (488)
                      +.+...++||+++.....       .++|++...  +++. -.+...+..+.++.|.||++|.+|.||++|..  +|++|
T Consensus       423 vSdp~s~qv~rv~sl~~~d~~~N~evvaG~Ge~Clp~des-CGDGalA~dA~L~~PkGIa~dk~g~lYfaD~t--~IR~i  499 (1899)
T KOG4659|consen  423 VSDPLSKQVWRVSSLEPQDSRNNYEVVAGDGEVCLPADES-CGDGALAQDAQLIFPKGIAFDKMGNLYFADGT--RIRVI  499 (1899)
T ss_pred             ecCCCcceEEEeccCCccccccCeeEEeccCcCccccccc-cCcchhcccceeccCCceeEccCCcEEEeccc--EEEEe
Confidence            345667999998644333       677877643  2322 34444556677889999999999999999975  89999


Q ss_pred             eCCCCcccccEEEecCCC-----------------------------------------------------------Cc-
Q 011333          110 SSSLSLYSRPKLVAGSAE-----------------------------------------------------------GY-  129 (488)
Q Consensus       110 d~~g~~~g~i~tvaG~~~-----------------------------------------------------------G~-  129 (488)
                      |.+|    .++++.|+..                                                           .+ 
T Consensus       500 D~~g----iIstlig~~~~~~~p~~C~~~~kl~~~~leWPT~LaV~Pmdnsl~Vld~nvvlrit~~~rV~Ii~GrP~hC~  575 (1899)
T KOG4659|consen  500 DTTG----IISTLIGTTPDQHPPRTCAQITKLVDLQLEWPTSLAVDPMDNSLLVLDTNVVLRITVVHRVRIILGRPTHCD  575 (1899)
T ss_pred             ccCc----eEEEeccCCCCccCccccccccchhheeeecccceeecCCCCeEEEeecceEEEEccCccEEEEcCCccccc
Confidence            9884    5566655421                                                           00 


Q ss_pred             -cc---cCCCcccccccCCcceEEEcCCCcEEEEECCC---CEEEEEc-CCCcEEEeCCccCCCC---------CCCCCC
Q 011333          130 -SG---HVDGKPREARMNHPKGLTVDDRGNIYIADTMN---MAIRKIS-DSGVTTIAGGKWGRGG---------GHVDGP  192 (488)
Q Consensus       130 -~G---~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~N---~rIrkid-~ggVttIaGg~~g~~~---------g~~dG~  192 (488)
                       .|   ..--.+..++|-.|..|||..+|.||||++..   +|||++. +|++..+||++..++|         ..+++.
T Consensus       576 ~a~~t~~~skla~H~tl~~~r~Iavg~~G~lyvaEsD~rriNrvr~~~tdg~i~ilaGa~S~C~C~~~~~cdcfs~~~~~  655 (1899)
T KOG4659|consen  576 LANATSSASKLADHRTLLIQRDIAVGTDGALYVAESDGRRINRVRKLSTDGTISILAGAKSPCSCDVAACCDCFSLRDVA  655 (1899)
T ss_pred             cCCCchhhhhhhhhhhhhhhhceeecCCceEEEEeccchhhhheEEeccCceEEEecCCCCCCCcccccCCccccccchh
Confidence             00   00001334456677888888999999999875   6788888 7779999998765533         123567


Q ss_pred             cccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcC
Q 011333          193 SEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLH  229 (488)
Q Consensus       193 ~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~  229 (488)
                      +++|+|+.|..+| |.++|.|||||.+|-||++++..
T Consensus       656 At~A~lnsp~ala-VsPdg~v~IAD~gN~rIr~Vs~~  691 (1899)
T KOG4659|consen  656 ATQAKLNSPYALA-VSPDGDVIIADSGNSRIRKVSAR  691 (1899)
T ss_pred             hhccccCCcceEE-ECCCCcEEEecCCchhhhhhhhc
Confidence            8999999999999 89999999999999999998755

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.40  E-value=1.9e-11  Score=119.45  Aligned_cols=145  Identities=23%  Similarity=0.252  Sum_probs=103.4

Q ss_pred             CCCCCCceEEEEccCCcEEEEECCC--------CeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEE
Q 011333           79 SKLGIEPYSVEVLPGGELLILDSAN--------SNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTV  150 (488)
Q Consensus        79 ~~~l~~P~GIaVd~dG~LYVaD~~n--------~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAv  150 (488)
                      ...+..|++++++++|+|||+|...        ++|+++++++    .+..+...                |..|+||++
T Consensus        82 ~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~~----~~~~~~~~----------------~~~pNGi~~  141 (246)
T PF08450_consen   82 GVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPDG----KVTVVADG----------------LGFPNGIAF  141 (246)
T ss_dssp             CSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETTS----EEEEEEEE----------------ESSEEEEEE
T ss_pred             CcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCCC----eEEEEecC----------------cccccceEE
Confidence            3367799999999999999999765        5799999983    44444332                788999999


Q ss_pred             cCCCc-EEEEECCCCEEEEEc-C--CC-c---EEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCe
Q 011333          151 DDRGN-IYIADTMNMAIRKIS-D--SG-V---TTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRA  222 (488)
Q Consensus       151 D~dG~-LYVAD~~N~rIrkid-~--gg-V---ttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~r  222 (488)
                      +++|+ |||+|+.+++|.+++ +  +. +   .+++....              ....|-|++ +|.+|+|||++.++++
T Consensus       142 s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~--------------~~g~pDG~~-vD~~G~l~va~~~~~~  206 (246)
T PF08450_consen  142 SPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPG--------------GPGYPDGLA-VDSDGNLWVADWGGGR  206 (246)
T ss_dssp             ETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SS--------------SSCEEEEEE-EBTTS-EEEEEETTTE
T ss_pred             CCcchheeecccccceeEEEeccccccceeeeeeEEEcCC--------------CCcCCCcce-EcCCCCEEEEEcCCCE
Confidence            99996 999999999999999 2  33 2   22322111              013588999 8999999999999999


Q ss_pred             EEEEEcCCCceEEe-ccCCCcceEEEEecCCceEEEE
Q 011333          223 IREIQLHFDDCAYQ-YGSSFPLGIAVLLAAGFFGYML  258 (488)
Q Consensus       223 IrkI~~~g~~~~~~-~~~g~P~GIav~~g~g~~Gy~~  258 (488)
                      |++++++|...... .....|..+++.....-.-|+.
T Consensus       207 I~~~~p~G~~~~~i~~p~~~~t~~~fgg~~~~~L~vT  243 (246)
T PF08450_consen  207 IVVFDPDGKLLREIELPVPRPTNCAFGGPDGKTLYVT  243 (246)
T ss_dssp             EEEEETTSCEEEEEE-SSSSEEEEEEESTTSSEEEEE
T ss_pred             EEEECCCccEEEEEcCCCCCEEEEEEECCCCCEEEEE
Confidence            99999998755533 3334788888743333444443

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]

Probab=99.38  E-value=1.2e-11  Score=140.07  Aligned_cols=160  Identities=24%  Similarity=0.312  Sum_probs=114.0

Q ss_pred             ccCCceeEEeecCCCCCCCceEEEEcc-CCcEEEEECCCCeEEEEeCCCCc--ccccEEEecCCC------CccccCCCc
Q 011333           66 FESGYTVETVFDGSKLGIEPYSVEVLP-GGELLILDSANSNLYRISSSLSL--YSRPKLVAGSAE------GYSGHVDGK  136 (488)
Q Consensus        66 ~~dG~~~~~~~~G~~~l~~P~GIaVd~-dG~LYVaD~~n~rI~kid~~g~~--~g~i~tvaG~~~------G~~G~~dG~  136 (488)
                      +.+|...+..--+...-.+-+.||++| +|.|||+|...++|+|+..-..+  -....++||.+.      ..||+ .+.
T Consensus       390 ~~dg~v~tIl~L~~t~~sh~Yy~AvsPvdgtlyvSdp~s~qv~rv~sl~~~d~~~N~evvaG~Ge~Clp~desCGD-Gal  468 (1899)
T KOG4659|consen  390 SQDGQVSTILTLGLTDTSHSYYIAVSPVDGTLYVSDPLSKQVWRVSSLEPQDSRNNYEVVAGDGEVCLPADESCGD-GAL  468 (1899)
T ss_pred             cCCCceEEEEEecCCCccceeEEEecCcCceEEecCCCcceEEEeccCCccccccCeeEEeccCcCccccccccCc-chh
Confidence            345544444333333344678999999 99999999999999999643111  245678998762      23563 345


Q ss_pred             ccccccCCcceEEEcCCCcEEEEECCCCEEEEEcC-CCcEEEeCCccCC--CCCCCCC-CcccccCCCCCeeEEECCCCe
Q 011333          137 PREARMNHPKGLTVDDRGNIYIADTMNMAIRKISD-SGVTTIAGGKWGR--GGGHVDG-PSEDAKFSNDFDVVYIGSSCS  212 (488)
Q Consensus       137 a~~a~Ln~P~GIAvD~dG~LYVAD~~N~rIrkid~-ggVttIaGg~~g~--~~g~~dG-~~~~a~f~~P~gIa~vd~~G~  212 (488)
                      |.+|+|..|.|||||.+|+||+||.  .+||++|. |-|+|+.|...-.  .-.+..+ ...+.+|.+|.++|+.+-++.
T Consensus       469 A~dA~L~~PkGIa~dk~g~lYfaD~--t~IR~iD~~giIstlig~~~~~~~p~~C~~~~kl~~~~leWPT~LaV~Pmdns  546 (1899)
T KOG4659|consen  469 AQDAQLIFPKGIAFDKMGNLYFADG--TRIRVIDTTGIISTLIGTTPDQHPPRTCAQITKLVDLQLEWPTSLAVDPMDNS  546 (1899)
T ss_pred             cccceeccCCceeEccCCcEEEecc--cEEEEeccCceEEEeccCCCCccCccccccccchhheeeecccceeecCCCCe
Confidence            8899999999999999999999995  89999994 5588888743211  0112222 445678999999997777999


Q ss_pred             EEEEECCCCeEEEEEcCC
Q 011333          213 LLVIDRGNRAIREIQLHF  230 (488)
Q Consensus       213 LYVaD~gN~rIrkI~~~g  230 (488)
                      |||.|  ||.|.+|+.+.
T Consensus       547 l~Vld--~nvvlrit~~~  562 (1899)
T KOG4659|consen  547 LLVLD--TNVVLRITVVH  562 (1899)
T ss_pred             EEEee--cceEEEEccCc
Confidence            99999  45666666554

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.27  E-value=7.1e-11  Score=115.47  Aligned_cols=154  Identities=22%  Similarity=0.339  Sum_probs=105.2

Q ss_pred             CceEEEEc-cCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEECC
Q 011333           84 EPYSVEVL-PGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTM  162 (488)
Q Consensus        84 ~P~GIaVd-~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~  162 (488)
                      .|.|++++ ++|.|||++..  .+.+++..+   +.+..++....+          ...++.|+++++|++|+|||+|..
T Consensus        41 ~~~G~~~~~~~g~l~v~~~~--~~~~~d~~~---g~~~~~~~~~~~----------~~~~~~~ND~~vd~~G~ly~t~~~  105 (246)
T PF08450_consen   41 GPNGMAFDRPDGRLYVADSG--GIAVVDPDT---GKVTVLADLPDG----------GVPFNRPNDVAVDPDGNLYVTDSG  105 (246)
T ss_dssp             SEEEEEEECTTSEEEEEETT--CEEEEETTT---TEEEEEEEEETT----------CSCTEEEEEEEE-TTS-EEEEEEC
T ss_pred             CCceEEEEccCCEEEEEEcC--ceEEEecCC---CcEEEEeeccCC----------CcccCCCceEEEcCCCCEEEEecC
Confidence            49999999 79999999975  445558775   456666543110          124888999999999999999986


Q ss_pred             C--------CEEEEEcCC-CcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCce
Q 011333          163 N--------MAIRKISDS-GVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDC  233 (488)
Q Consensus       163 N--------~rIrkid~g-gVttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g~~~  233 (488)
                      .        .+|.+++.+ .+..+..                 .+..|+||++..+...|||+|+.+++|++++++....
T Consensus       106 ~~~~~~~~~g~v~~~~~~~~~~~~~~-----------------~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~  168 (246)
T PF08450_consen  106 GGGASGIDPGSVYRIDPDGKVTVVAD-----------------GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGG  168 (246)
T ss_dssp             CBCTTCGGSEEEEEEETTSEEEEEEE-----------------EESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTC
T ss_pred             CCccccccccceEEECCCCeEEEEec-----------------CcccccceEECCcchheeecccccceeEEEecccccc
Confidence            4        568888844 4555442                 2668999996555557999999999999999975332


Q ss_pred             -----E-E---eccCCCcceEEEEecCCceEEEEEEEEeccceEEeccC
Q 011333          234 -----A-Y---QYGSSFPLGIAVLLAAGFFGYMLALLQRRVGTIVSSQN  273 (488)
Q Consensus       234 -----~-~---~~~~g~P~GIav~~g~g~~Gy~~a~l~~~~g~~~~s~~  273 (488)
                           . .   ....+.|+|++++..    |.++...-..-++.+.+++
T Consensus       169 ~~~~~~~~~~~~~~~g~pDG~~vD~~----G~l~va~~~~~~I~~~~p~  213 (246)
T PF08450_consen  169 ELSNRRVFIDFPGGPGYPDGLAVDSD----GNLWVADWGGGRIVVFDPD  213 (246)
T ss_dssp             CEEEEEEEEE-SSSSCEEEEEEEBTT----S-EEEEEETTTEEEEEETT
T ss_pred             ceeeeeeEEEcCCCCcCCCcceEcCC----CCEEEEEcCCCEEEEECCC
Confidence                 1 1   122246999999954    5555554444455555544

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=98.79  E-value=2e-07  Score=95.64  Aligned_cols=141  Identities=18%  Similarity=0.157  Sum_probs=96.2

Q ss_pred             CCCCCceEEEEccCCcEEEEECC-----------CCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceE
Q 011333           80 KLGIEPYSVEVLPGGELLILDSA-----------NSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGL  148 (488)
Q Consensus        80 ~~l~~P~GIaVd~dG~LYVaD~~-----------n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GI  148 (488)
                      ..++.|+.+.++++|.+||.|..           .++|+++++.+   +.+..+.+.                +..|+||
T Consensus       108 ~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g---~~~~l~~~~----------------~~~~NGl  168 (307)
T COG3386         108 LPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDG---GVVRLLDDD----------------LTIPNGL  168 (307)
T ss_pred             CCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCC---CEEEeecCc----------------EEecCce
Confidence            33579999999999999999987           25799999864   233444332                6779999


Q ss_pred             EEcCCC-cEEEEECCCCEEEEEc-CC-CcEEEeCCccCC-CCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCC-CeE
Q 011333          149 TVDDRG-NIYIADTMNMAIRKIS-DS-GVTTIAGGKWGR-GGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGN-RAI  223 (488)
Q Consensus       149 AvD~dG-~LYVAD~~N~rIrkid-~g-gVttIaGg~~g~-~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN-~rI  223 (488)
                      |+++|| .+|++|+..++|.+++ +. .+..  ++.... .+....        -.|-|++ +|.+|+||++-..+ .+|
T Consensus       169 a~SpDg~tly~aDT~~~~i~r~~~d~~~g~~--~~~~~~~~~~~~~--------G~PDG~~-vDadG~lw~~a~~~g~~v  237 (307)
T COG3386         169 AFSPDGKTLYVADTPANRIHRYDLDPATGPI--GGRRGFVDFDEEP--------GLPDGMA-VDADGNLWVAAVWGGGRV  237 (307)
T ss_pred             EECCCCCEEEEEeCCCCeEEEEecCcccCcc--CCcceEEEccCCC--------CCCCceE-EeCCCCEEEecccCCceE
Confidence            999999 7999999999999998 42 1100  010000 000001        2578888 89999999655544 499


Q ss_pred             EEEEcCCCceEEeccC-CCcceEEEEec
Q 011333          224 REIQLHFDDCAYQYGS-SFPLGIAVLLA  250 (488)
Q Consensus       224 rkI~~~g~~~~~~~~~-g~P~GIav~~g  250 (488)
                      .+++++|.......-- ..|...|+...
T Consensus       238 ~~~~pdG~l~~~i~lP~~~~t~~~FgG~  265 (307)
T COG3386         238 VRFNPDGKLLGEIKLPVKRPTNPAFGGP  265 (307)
T ss_pred             EEECCCCcEEEEEECCCCCCccceEeCC
Confidence            9999997644433222 55667776644

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=98.77  E-value=2.9e-07  Score=94.43  Aligned_cols=154  Identities=17%  Similarity=0.198  Sum_probs=101.9

Q ss_pred             CceEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEECCC
Q 011333           84 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMN  163 (488)
Q Consensus        84 ~P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~N  163 (488)
                      .+.++.++..|.|++++.+-   ++++.+.+  +.++.++-..           ...+++.|+++.+|++|.+||.|..+
T Consensus        68 ~~~~~~~d~~g~Lv~~~~g~---~~~~~~~~--~~~t~~~~~~-----------~~~~~~r~ND~~v~pdG~~wfgt~~~  131 (307)
T COG3386          68 FSSGALIDAGGRLIACEHGV---RLLDPDTG--GKITLLAEPE-----------DGLPLNRPNDGVVDPDGRIWFGDMGY  131 (307)
T ss_pred             cccceeecCCCeEEEEcccc---EEEeccCC--ceeEEecccc-----------CCCCcCCCCceeEcCCCCEEEeCCCc
Confidence            36788899999999999864   33333321  2224444331           12457999999999999999999872


Q ss_pred             -----------CEEEEEc-CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcC--
Q 011333          164 -----------MAIRKIS-DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLH--  229 (488)
Q Consensus       164 -----------~rIrkid-~ggVttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~--  229 (488)
                                 .+|++++ .+++..+...                .+..|+|||+.++...||++|+..++|++++.+  
T Consensus       132 ~~~~~~~~~~~G~lyr~~p~g~~~~l~~~----------------~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~  195 (307)
T COG3386         132 FDLGKSEERPTGSLYRVDPDGGVVRLLDD----------------DLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPA  195 (307)
T ss_pred             cccCccccCCcceEEEEcCCCCEEEeecC----------------cEEecCceEECCCCCEEEEEeCCCCeEEEEecCcc
Confidence                       3588888 5555554432                266899999655444999999999999999887  


Q ss_pred             -CCce----EE--eccCCCcceEEEEecCCceEEEE-EEEEeccceEEeccC
Q 011333          230 -FDDC----AY--QYGSSFPLGIAVLLAAGFFGYML-ALLQRRVGTIVSSQN  273 (488)
Q Consensus       230 -g~~~----~~--~~~~g~P~GIav~~g~g~~Gy~~-a~l~~~~g~~~~s~~  273 (488)
                       +...    ..  ....+.|+|+++|..    |++| +......+..+.+..
T Consensus       196 ~g~~~~~~~~~~~~~~~G~PDG~~vDad----G~lw~~a~~~g~~v~~~~pd  243 (307)
T COG3386         196 TGPIGGRRGFVDFDEEPGLPDGMAVDAD----GNLWVAAVWGGGRVVRFNPD  243 (307)
T ss_pred             cCccCCcceEEEccCCCCCCCceEEeCC----CCEEEecccCCceEEEECCC
Confidence             2111    11  124489999999966    5555 333333344444444

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=98.75  E-value=5.7e-07  Score=93.98  Aligned_cols=145  Identities=17%  Similarity=0.182  Sum_probs=95.1

Q ss_pred             ecCCCCCCCceEEEEccCCcEEEEECCC------------CeEEEEeCCC--CcccccEEEecCCCCccccCCCcccccc
Q 011333           76 FDGSKLGIEPYSVEVLPGGELLILDSAN------------SNLYRISSSL--SLYSRPKLVAGSAEGYSGHVDGKPREAR  141 (488)
Q Consensus        76 ~~G~~~l~~P~GIaVd~dG~LYVaD~~n------------~rI~kid~~g--~~~g~i~tvaG~~~G~~G~~dG~a~~a~  141 (488)
                      ++....+.+|.+|++|++|+|||++..+            .+|++++...  +...+.++++..                
T Consensus         7 ~A~~p~~~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~----------------   70 (367)
T TIGR02604         7 FAAEPLLRNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEE----------------   70 (367)
T ss_pred             EECCCccCCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecC----------------
Confidence            3445567899999999999999998532            3888886531  112233455432                


Q ss_pred             cCCcceEEEcCCCcEEEEECCCCEEEEEc--CC------CcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeE
Q 011333          142 MNHPKGLTVDDRGNIYIADTMNMAIRKIS--DS------GVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSL  213 (488)
Q Consensus       142 Ln~P~GIAvD~dG~LYVAD~~N~rIrkid--~g------gVttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~L  213 (488)
                      |+.|+||++.++| |||++.  .+|.++.  ++      ..++++.+-...     +    ......+++++ ++++|.|
T Consensus        71 l~~p~Gi~~~~~G-lyV~~~--~~i~~~~d~~gdg~ad~~~~~l~~~~~~~-----~----~~~~~~~~~l~-~gpDG~L  137 (367)
T TIGR02604        71 LSMVTGLAVAVGG-VYVATP--PDILFLRDKDGDDKADGEREVLLSGFGGQ-----I----NNHHHSLNSLA-WGPDGWL  137 (367)
T ss_pred             CCCccceeEecCC-EEEeCC--CeEEEEeCCCCCCCCCCccEEEEEccCCC-----C----CcccccccCce-ECCCCCE
Confidence            7789999999999 999985  5788874  22      333444321100     0    00134588998 7899999


Q ss_pred             EEEECCC-------------------CeEEEEEcCCCceE-EeccCCCcceEEEEe
Q 011333          214 LVIDRGN-------------------RAIREIQLHFDDCA-YQYGSSFPLGIAVLL  249 (488)
Q Consensus       214 YVaD~gN-------------------~rIrkI~~~g~~~~-~~~~~g~P~GIav~~  249 (488)
                      ||++..+                   +.|+++++++.... +..+...|.|++++.
T Consensus       138 Yv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~  193 (367)
T TIGR02604       138 YFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGFQNPYGHSVDS  193 (367)
T ss_pred             EEecccCCCceeccCCCccCcccccCceEEEEecCCCeEEEEecCcCCCccceECC
Confidence            9988732                   46888888765433 334455677777764

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]

Probab=98.58  E-value=4.5e-07  Score=94.20  Aligned_cols=136  Identities=15%  Similarity=0.196  Sum_probs=98.5

Q ss_pred             CceEEEEccCC-cEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEECC
Q 011333           84 EPYSVEVLPGG-ELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTM  162 (488)
Q Consensus        84 ~P~GIaVd~dG-~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~  162 (488)
                      .|-||+++..| +|||||..- -+++|++.++   ....++...       +|    ..+.-.+++.||++|.||++|+.
T Consensus       116 RPLGl~f~~~ggdL~VaDAYl-GL~~V~p~g~---~a~~l~~~~-------~G----~~~kf~N~ldI~~~g~vyFTDSS  180 (376)
T KOG1520|consen  116 RPLGIRFDKKGGDLYVADAYL-GLLKVGPEGG---LAELLADEA-------EG----KPFKFLNDLDIDPEGVVYFTDSS  180 (376)
T ss_pred             CcceEEeccCCCeEEEEecce-eeEEECCCCC---cceeccccc-------cC----eeeeecCceeEcCCCeEEEeccc
Confidence            89999999866 999999864 6889999973   344444432       22    35778899999999999999975


Q ss_pred             C-----------------CEEEEEc-CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEE
Q 011333          163 N-----------------MAIRKIS-DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIR  224 (488)
Q Consensus       163 N-----------------~rIrkid-~ggVttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIr  224 (488)
                      .                 +|+.+|| ..+++++                .-..|..|+||++..+...|.||++...||+
T Consensus       181 sk~~~rd~~~a~l~g~~~GRl~~YD~~tK~~~V----------------Lld~L~F~NGlaLS~d~sfvl~~Et~~~ri~  244 (376)
T KOG1520|consen  181 SKYDRRDFVFAALEGDPTGRLFRYDPSTKVTKV----------------LLDGLYFPNGLALSPDGSFVLVAETTTARIK  244 (376)
T ss_pred             cccchhheEEeeecCCCccceEEecCcccchhh----------------hhhcccccccccCCCCCCEEEEEeeccceee
Confidence            3                 2444444 1222211                1124788999997777778999999999999


Q ss_pred             EEEcCCCceE---Ee-c-cCCCcceEEEEec
Q 011333          225 EIQLHFDDCA---YQ-Y-GSSFPLGIAVLLA  250 (488)
Q Consensus       225 kI~~~g~~~~---~~-~-~~g~P~GIav~~g  250 (488)
                      ++.+.|....   .+ . --|.|++|..+..
T Consensus       245 rywi~g~k~gt~EvFa~~LPG~PDNIR~~~~  275 (376)
T KOG1520|consen  245 RYWIKGPKAGTSEVFAEGLPGYPDNIRRDST  275 (376)
T ss_pred             eeEecCCccCchhhHhhcCCCCCcceeECCC
Confidence            9999986442   22 2 3478999999943

>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins

Probab=98.50  E-value=1.5e-07  Score=62.76  Aligned_cols=28  Identities=43%  Similarity=0.772  Sum_probs=26.5

Q ss_pred             cCCcceEEEcCCCcEEEEECCCCEEEEE
Q 011333          142 MNHPKGLTVDDRGNIYIADTMNMAIRKI  169 (488)
Q Consensus       142 Ln~P~GIAvD~dG~LYVAD~~N~rIrki  169 (488)
                      |+.|.|||+|++|+|||||+.||||+++
T Consensus         1 f~~P~gvav~~~g~i~VaD~~n~rV~vf   28 (28)
T PF01436_consen    1 FNYPHGVAVDSDGNIYVADSGNHRVQVF   28 (28)
T ss_dssp             BSSEEEEEEETTSEEEEEECCCTEEEEE
T ss_pred             CcCCcEEEEeCCCCEEEEECCCCEEEEC
Confidence            6789999999999999999999999986

For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.49  E-value=6.2e-06  Score=86.80  Aligned_cols=145  Identities=22%  Similarity=0.344  Sum_probs=100.1

Q ss_pred             CCceEEEEccCC-cEEEEEC--CCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCc-EEE
Q 011333           83 IEPYSVEVLPGG-ELLILDS--ANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-IYI  158 (488)
Q Consensus        83 ~~P~GIaVd~dG-~LYVaD~--~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~-LYV  158 (488)
                      ..|.+++++++| .+||+|.  .++.|.+++..+..   +... . +   .|           ..|.+++++++|+ +||
T Consensus       116 ~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~---~~~~-~-~---vG-----------~~P~~~a~~p~g~~vyv  176 (381)
T COG3391         116 LGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNK---VTAT-I-P---VG-----------NTPTGVAVDPDGNKVYV  176 (381)
T ss_pred             cCCceEEECCCCCEEEEEecccCCceEEEEeCCCCe---EEEE-E-e---cC-----------CCcceEEECCCCCeEEE
Confidence            489999999987 6999999  57999999998632   1111 1 1   01           1589999999998 999


Q ss_pred             EECCCCEEEEEcCCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCe-EEEEECCC--CeEEEEEcCCCceEE
Q 011333          159 ADTMNMAIRKISDSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCS-LLVIDRGN--RAIREIQLHFDDCAY  235 (488)
Q Consensus       159 AD~~N~rIrkid~ggVttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~-LYVaD~gN--~rIrkI~~~g~~~~~  235 (488)
                      +|..+++|..++..+...+-+. ..         .....+..|.+++ ++++|. +||++..+  +.|.+++........
T Consensus       177 ~~~~~~~v~vi~~~~~~v~~~~-~~---------~~~~~~~~P~~i~-v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~  245 (381)
T COG3391         177 TNSDDNTVSVIDTSGNSVVRGS-VG---------SLVGVGTGPAGIA-VDPDGNRVYVANDGSGSNNVLKIDTATGNVTA  245 (381)
T ss_pred             EecCCCeEEEEeCCCcceeccc-cc---------cccccCCCCceEE-ECCCCCEEEEEeccCCCceEEEEeCCCceEEE
Confidence            9999999999995443333111 00         0123467899999 677675 99999988  699999988754443


Q ss_pred             e--ccCC-CcceEEEEecCCceEEEE
Q 011333          236 Q--YGSS-FPLGIAVLLAAGFFGYML  258 (488)
Q Consensus       236 ~--~~~g-~P~GIav~~g~g~~Gy~~  258 (488)
                      .  .... .|.++++.. +|..-|+.
T Consensus       246 ~~~~~~~~~~~~v~~~p-~g~~~yv~  270 (381)
T COG3391         246 TDLPVGSGAPRGVAVDP-AGKAAYVA  270 (381)
T ss_pred             eccccccCCCCceeECC-CCCEEEEE
Confidence            2  1111 577777763 33444443

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.42  E-value=6.9e-06  Score=86.48  Aligned_cols=141  Identities=20%  Similarity=0.211  Sum_probs=100.4

Q ss_pred             CCceEEEEccCCc-EEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCC-cEEEEE
Q 011333           83 IEPYSVEVLPGGE-LLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRG-NIYIAD  160 (488)
Q Consensus        83 ~~P~GIaVd~dG~-LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG-~LYVAD  160 (488)
                      ..|.++++.++|. +|+++..+++|.+|+.+...   +......                -..|.+++++++| .+||+|
T Consensus        74 ~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~---~~~~~~v----------------G~~P~~~~~~~~~~~vYV~n  134 (381)
T COG3391          74 VYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNT---VLGSIPV----------------GLGPVGLAVDPDGKYVYVAN  134 (381)
T ss_pred             ccccceeeCCCCCeEEEecCCCCeEEEEcCcccc---eeeEeee----------------ccCCceEEECCCCCEEEEEe
Confidence            5899999999887 99999999999999965421   1111111                1269999999988 799999


Q ss_pred             C--CCCEEEEEcCCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCe-EEEEECCCCeEEEEEcCCCceEE--
Q 011333          161 T--MNMAIRKISDSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCS-LLVIDRGNRAIREIQLHFDDCAY--  235 (488)
Q Consensus       161 ~--~N~rIrkid~ggVttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~-LYVaD~gN~rIrkI~~~g~~~~~--  235 (488)
                      .  .++.|.+++...-..+.-...+               ..|.+++ ++++|. +||+|..+++|..|+..+.....  
T Consensus       135 ~~~~~~~vsvid~~t~~~~~~~~vG---------------~~P~~~a-~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~  198 (381)
T COG3391         135 AGNGNNTVSVIDAATNKVTATIPVG---------------NTPTGVA-VDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGS  198 (381)
T ss_pred             cccCCceEEEEeCCCCeEEEEEecC---------------CCcceEE-ECCCCCeEEEEecCCCeEEEEeCCCcceeccc
Confidence            9  5799999994442222212211               1578999 677777 99999999999999988765552  


Q ss_pred             ----eccCCCcceEEEEecCCceEEEEE
Q 011333          236 ----QYGSSFPLGIAVLLAAGFFGYMLA  259 (488)
Q Consensus       236 ----~~~~g~P~GIav~~g~g~~Gy~~a  259 (488)
                          ......|.+++++.. |-.-|+..
T Consensus       199 ~~~~~~~~~~P~~i~v~~~-g~~~yV~~  225 (381)
T COG3391         199 VGSLVGVGTGPAGIAVDPD-GNRVYVAN  225 (381)
T ss_pred             cccccccCCCCceEEECCC-CCEEEEEe
Confidence                333457899998744 33344433

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=98.37  E-value=6.4e-06  Score=82.51  Aligned_cols=134  Identities=19%  Similarity=0.228  Sum_probs=95.6

Q ss_pred             CCCceEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEe-cCCCCccccCCCcccccccCCcceEEEcCCCcEEEEE
Q 011333           82 GIEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVA-GSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIAD  160 (488)
Q Consensus        82 l~~P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tva-G~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD  160 (488)
                      +..|+.|+.++||.+|+.+.+.+.|-++|+.+   |++.++. |+                =.+|.+|.+++||..||+|
T Consensus        61 G~ap~dvapapdG~VWft~qg~gaiGhLdP~t---Gev~~ypLg~----------------Ga~Phgiv~gpdg~~Witd  121 (353)
T COG4257          61 GSAPFDVAPAPDGAVWFTAQGTGAIGHLDPAT---GEVETYPLGS----------------GASPHGIVVGPDGSAWITD  121 (353)
T ss_pred             CCCccccccCCCCceEEecCccccceecCCCC---CceEEEecCC----------------CCCCceEEECCCCCeeEec
Confidence            45799999999999999999999999999987   5555553 22                1369999999999999999


Q ss_pred             CCCCEEEEEc--CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCceEEe--
Q 011333          161 TMNMAIRKIS--DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCAYQ--  236 (488)
Q Consensus       161 ~~N~rIrkid--~ggVttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g~~~~~~--  236 (488)
                      +++ .|++++  ..+++++.--.          ...++.|++    +++|..|+|+|+.. ++.-=++++.-.....+  
T Consensus       122 ~~~-aI~R~dpkt~evt~f~lp~----------~~a~~nlet----~vfD~~G~lWFt~q-~G~yGrLdPa~~~i~vfpa  185 (353)
T COG4257         122 TGL-AIGRLDPKTLEVTRFPLPL----------EHADANLET----AVFDPWGNLWFTGQ-IGAYGRLDPARNVISVFPA  185 (353)
T ss_pred             Ccc-eeEEecCcccceEEeeccc----------ccCCCcccc----eeeCCCccEEEeec-cccceecCcccCceeeecc
Confidence            988 999999  34466653211          112334544    34799999999986 33333555544433332  


Q ss_pred             ccCCCcceEEEEec
Q 011333          237 YGSSFPLGIAVLLA  250 (488)
Q Consensus       237 ~~~g~P~GIav~~g  250 (488)
                      ...+.|.|||+...
T Consensus       186 PqG~gpyGi~atpd  199 (353)
T COG4257         186 PQGGGPYGICATPD  199 (353)
T ss_pred             CCCCCCcceEECCC
Confidence            22346999999844

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=98.33  E-value=1.8e-05  Score=79.38  Aligned_cols=152  Identities=16%  Similarity=0.171  Sum_probs=96.3

Q ss_pred             CCCceEEEEccCCcEEEEECCCCeEEEEeCCCCcccccE---------------------EEecCCCCccccCCCc-cc-
Q 011333           82 GIEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPK---------------------LVAGSAEGYSGHVDGK-PR-  138 (488)
Q Consensus        82 l~~P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~---------------------tvaG~~~G~~G~~dG~-a~-  138 (488)
                      +..|++|.+++||..||+|.++ .|.|+++++..+.+..                     .+.|. .|+.|.-|=. .. 
T Consensus       103 Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~lp~~~a~~nlet~vfD~~G~lWFt~q-~G~yGrLdPa~~~i  180 (353)
T COG4257         103 GASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFPLPLEHADANLETAVFDPWGNLWFTGQ-IGAYGRLDPARNVI  180 (353)
T ss_pred             CCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEeecccccCCCcccceeeCCCccEEEeec-cccceecCcccCce
Confidence            5689999999999999999988 9999999643211110                     01111 1222211100 00 


Q ss_pred             ----ccccCCcceEEEcCCCcEEEEECCCCEEEEEc-CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeE
Q 011333          139 ----EARMNHPKGLTVDDRGNIYIADTMNMAIRKIS-DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSL  213 (488)
Q Consensus       139 ----~a~Ln~P~GIAvD~dG~LYVAD~~N~rIrkid-~ggVttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~L  213 (488)
                          .-+=..|.|||+.+||.+|++....+.|-+|| ..+...+..-+..             +-+.-..|- +|+.|.+
T Consensus       181 ~vfpaPqG~gpyGi~atpdGsvwyaslagnaiaridp~~~~aev~p~P~~-------------~~~gsRriw-sdpig~~  246 (353)
T COG4257         181 SVFPAPQGGGPYGICATPDGSVWYASLAGNAIARIDPFAGHAEVVPQPNA-------------LKAGSRRIW-SDPIGRA  246 (353)
T ss_pred             eeeccCCCCCCcceEECCCCcEEEEeccccceEEcccccCCcceecCCCc-------------ccccccccc-cCccCcE
Confidence                00224688999999999999999999999999 2222222111111             011123344 8999999


Q ss_pred             EEEECCCCeEEEEEcCCCceEEe---ccCCCcceEEEEe
Q 011333          214 LVIDRGNRAIREIQLHFDDCAYQ---YGSSFPLGIAVLL  249 (488)
Q Consensus       214 YVaD~gN~rIrkI~~~g~~~~~~---~~~g~P~GIav~~  249 (488)
                      +++++++.++.++++........   .....|..+.||.
T Consensus       247 wittwg~g~l~rfdPs~~sW~eypLPgs~arpys~rVD~  285 (353)
T COG4257         247 WITTWGTGSLHRFDPSVTSWIEYPLPGSKARPYSMRVDR  285 (353)
T ss_pred             EEeccCCceeeEeCcccccceeeeCCCCCCCcceeeecc
Confidence            99999999999999886544332   2223677777773

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=98.30  E-value=2.5e-06  Score=72.32  Aligned_cols=65  Identities=18%  Similarity=0.336  Sum_probs=52.2

Q ss_pred             EEEEccC-CcEEEEECC-----------------CCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceE
Q 011333           87 SVEVLPG-GELLILDSA-----------------NSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGL  148 (488)
Q Consensus        87 GIaVd~d-G~LYVaD~~-----------------n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GI  148 (488)
                      +|+|+++ |.||++|+.                 ++|+.++++.+   ++..+++.+                |..|+||
T Consensus         2 dldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t---~~~~vl~~~----------------L~fpNGV   62 (89)
T PF03088_consen    2 DLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPST---KETTVLLDG----------------LYFPNGV   62 (89)
T ss_dssp             EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTT---TEEEEEEEE----------------ESSEEEE
T ss_pred             ceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCC---CeEEEehhC----------------CCccCeE
Confidence            6889998 999999974                 38999999997   566777764                8889999


Q ss_pred             EEcCCCc-EEEEECCCCEEEEEc
Q 011333          149 TVDDRGN-IYIADTMNMAIRKIS  170 (488)
Q Consensus       149 AvD~dG~-LYVAD~~N~rIrkid  170 (488)
                      ++++|+. |+||++..+||.|+-
T Consensus        63 als~d~~~vlv~Et~~~Ri~ryw   85 (89)
T PF03088_consen   63 ALSPDESFVLVAETGRYRILRYW   85 (89)
T ss_dssp             EE-TTSSEEEEEEGGGTEEEEEE
T ss_pred             EEcCCCCEEEEEeccCceEEEEE
Confidence            9999997 999999999999985

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=98.25  E-value=2e-05  Score=82.37  Aligned_cols=128  Identities=20%  Similarity=0.286  Sum_probs=82.1

Q ss_pred             CceEEEEccCCcEEEEECCC-------------------CeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCC
Q 011333           84 EPYSVEVLPGGELLILDSAN-------------------SNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNH  144 (488)
Q Consensus        84 ~P~GIaVd~dG~LYVaD~~n-------------------~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~  144 (488)
                      .+.++++++||.|||++..+                   +.|+++++++   +.+.+++..                |+.
T Consensus       125 ~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg---~~~e~~a~G----------------~rn  185 (367)
T TIGR02604       125 SLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDG---GKLRVVAHG----------------FQN  185 (367)
T ss_pred             cccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCC---CeEEEEecC----------------cCC
Confidence            47899999999999988732                   5799999987   345555432                788


Q ss_pred             cceEEEcCCCcEEEEECCCCEEEEEc---CCC---cEEEeCCc-cCCCCCC---C---------CC----CcccccCCCC
Q 011333          145 PKGLTVDDRGNIYIADTMNMAIRKIS---DSG---VTTIAGGK-WGRGGGH---V---------DG----PSEDAKFSND  201 (488)
Q Consensus       145 P~GIAvD~dG~LYVAD~~N~rIrkid---~gg---VttIaGg~-~g~~~g~---~---------dG----~~~~a~f~~P  201 (488)
                      |.||++|++|+||++|..++...++.   .++   ...+.+.. .....+.   .         .+    ...-..+..|
T Consensus       186 p~Gl~~d~~G~l~~tdn~~~~~~~i~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ap  265 (367)
T TIGR02604       186 PYGHSVDSWGDVFFCDNDDPPLCRVTPVAEGGRNGYQSFNGRRYDHADRGADHEVPTGEWRQDDRGVETVGDVAGGGTAP  265 (367)
T ss_pred             CccceECCCCCEEEEccCCCceeEEcccccccccCCCCCCCcccccccccccccccccccccccccccccccccCCCccc
Confidence            99999999999999998665444443   111   00000000 0000000   0         00    0011123578


Q ss_pred             CeeEEEC-------CCCeEEEEECCCCeEEEEEcCC
Q 011333          202 FDVVYIG-------SSCSLLVIDRGNRAIREIQLHF  230 (488)
Q Consensus       202 ~gIa~vd-------~~G~LYVaD~gN~rIrkI~~~g  230 (488)
                      .|+++..       -+|.|+|+|...++|.++.+..
T Consensus       266 ~G~~~y~g~~fp~~~~g~~fv~~~~~~~v~~~~l~~  301 (367)
T TIGR02604       266 CGIAFYRGDALPEEYRGLLLVGDAHGQLIVRYSLEP  301 (367)
T ss_pred             cEEEEeCCCcCCHHHCCCEEeeeccCCEEEEEEeec
Confidence            9998763       3589999999999999998864

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=98.22  E-value=4.6e-05  Score=78.91  Aligned_cols=145  Identities=19%  Similarity=0.253  Sum_probs=92.3

Q ss_pred             CCCceEEEEccCCc-EEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCc-EEEE
Q 011333           82 GIEPYSVEVLPGGE-LLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-IYIA  159 (488)
Q Consensus        82 l~~P~GIaVd~dG~-LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~-LYVA  159 (488)
                      ..+|+.+.++|+|. |||+|.+..+|+.++.+... +.+... ....-           ..-..|+.|+++++|. +||+
T Consensus       143 ~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~-~~l~~~-~~~~~-----------~~G~GPRh~~f~pdg~~~Yv~  209 (345)
T PF10282_consen  143 GPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDT-GKLTPV-DSIKV-----------PPGSGPRHLAFSPDGKYAYVV  209 (345)
T ss_dssp             STCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS--TEEEE-EEEEC-----------STTSSEEEEEE-TTSSEEEEE
T ss_pred             cccceeEEECCCCCEEEEEecCCCEEEEEEEeCCC-ceEEEe-ecccc-----------ccCCCCcEEEEcCCcCEEEEe
Confidence            45899999999987 99999999999999886422 122221 10000           0123599999999985 9999


Q ss_pred             ECCCCEEEEEc-C--CC-cEE---EeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCC-
Q 011333          160 DTMNMAIRKIS-D--SG-VTT---IAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFD-  231 (488)
Q Consensus       160 D~~N~rIrkid-~--gg-Vtt---IaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g~-  231 (488)
                      +..++.|..++ +  .+ ++.   +.....+.           ..-+.|.+|++.++...|||++++.+.|..|+++.. 
T Consensus       210 ~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~-----------~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~  278 (345)
T PF10282_consen  210 NELSNTVSVFDYDPSDGSLTEIQTISTLPEGF-----------TGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPAT  278 (345)
T ss_dssp             ETTTTEEEEEEEETTTTEEEEEEEEESCETTS-----------CSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTT
T ss_pred             cCCCCcEEEEeecccCCceeEEEEeeeccccc-----------cccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCC
Confidence            99999999887 3  33 322   22221110           011478999955445579999999999999998542 


Q ss_pred             -ceE----EeccCCCcceEEEEec
Q 011333          232 -DCA----YQYGSSFPLGIAVLLA  250 (488)
Q Consensus       232 -~~~----~~~~~g~P~GIav~~g  250 (488)
                       ...    ...+...|.+++++..
T Consensus       279 g~l~~~~~~~~~G~~Pr~~~~s~~  302 (345)
T PF10282_consen  279 GTLTLVQTVPTGGKFPRHFAFSPD  302 (345)
T ss_dssp             TTEEEEEEEEESSSSEEEEEE-TT
T ss_pred             CceEEEEEEeCCCCCccEEEEeCC
Confidence             111    1223446999999643

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins

Probab=98.18  E-value=2.8e-06  Score=56.60  Aligned_cols=28  Identities=25%  Similarity=0.252  Sum_probs=25.9

Q ss_pred             CCCceEEEEccCCcEEEEECCCCeEEEE
Q 011333           82 GIEPYSVEVLPGGELLILDSANSNLYRI  109 (488)
Q Consensus        82 l~~P~GIaVd~dG~LYVaD~~n~rI~ki  109 (488)
                      |..|+||+++++|+|||+|.+||||+++
T Consensus         1 f~~P~gvav~~~g~i~VaD~~n~rV~vf   28 (28)
T PF01436_consen    1 FNYPHGVAVDSDGNIYVADSGNHRVQVF   28 (28)
T ss_dssp             BSSEEEEEEETTSEEEEEECCCTEEEEE
T ss_pred             CcCCcEEEEeCCCCEEEEECCCCEEEEC
Confidence            3589999999999999999999999986

For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=98.07  E-value=0.00018  Score=73.21  Aligned_cols=145  Identities=14%  Similarity=0.117  Sum_probs=88.2

Q ss_pred             CCCceEEEEccCCc-EEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCc-EEEE
Q 011333           82 GIEPYSVEVLPGGE-LLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-IYIA  159 (488)
Q Consensus        82 l~~P~GIaVd~dG~-LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~-LYVA  159 (488)
                      ...|.+++++++|. |||++...+.|..++.+... +.+..+ ......+....+      -..|.+|+++++|+ ||++
T Consensus       174 g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~-~~~~~~-~~~~~~p~~~~~------~~~~~~i~~~pdg~~lyv~  245 (330)
T PRK11028        174 GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPH-GEIECV-QTLDMMPADFSD------TRWAADIHITPDGRHLYAC  245 (330)
T ss_pred             CCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCC-CCEEEE-EEEecCCCcCCC------CccceeEEECCCCCEEEEe
Confidence            45789999999987 88999888899888765210 122211 110000000000      23577899999996 9999


Q ss_pred             ECCCCEEEEEc---CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCc--eE
Q 011333          160 DTMNMAIRKIS---DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDD--CA  234 (488)
Q Consensus       160 D~~N~rIrkid---~ggVttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g~~--~~  234 (488)
                      +...+.|..|+   +++..++.+...   .           -..|.++++.++...|||+..+++.|..|+.+...  ..
T Consensus       246 ~~~~~~I~v~~i~~~~~~~~~~~~~~---~-----------~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~~g~l~  311 (330)
T PRK11028        246 DRTASLISVFSVSEDGSVLSFEGHQP---T-----------ETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDGETGLLT  311 (330)
T ss_pred             cCCCCeEEEEEEeCCCCeEEEeEEEe---c-----------cccCCceEECCCCCEEEEEEccCCcEEEEEEcCCCCcEE
Confidence            98888888876   333333322100   0           13688898544455899999988988888765322  11


Q ss_pred             E---eccCCCcceEEEE
Q 011333          235 Y---QYGSSFPLGIAVL  248 (488)
Q Consensus       235 ~---~~~~g~P~GIav~  248 (488)
                      .   ......|.+|+++
T Consensus       312 ~~~~~~~g~~P~~~~~~  328 (330)
T PRK11028        312 ELGRYAVGQGPMWVSVL  328 (330)
T ss_pred             EccccccCCCceEEEEE
Confidence            1   1223467777763

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=98.04  E-value=0.00011  Score=75.99  Aligned_cols=127  Identities=13%  Similarity=0.212  Sum_probs=84.7

Q ss_pred             CCCCCceEEEEccCCc-EEEEECCCCeEEEEeCCCCcccccEEEe---cCCCCccccCCCcccccccCCcceEEEcCCCc
Q 011333           80 KLGIEPYSVEVLPGGE-LLILDSANSNLYRISSSLSLYSRPKLVA---GSAEGYSGHVDGKPREARMNHPKGLTVDDRGN  155 (488)
Q Consensus        80 ~~l~~P~GIaVd~dG~-LYVaD~~n~rI~kid~~g~~~g~i~tva---G~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~  155 (488)
                      ..+..|..++++++|. +||++..++.|..++.+... +.+..+.   -.+.+..|          -+.|.+|++++||+
T Consensus       189 ~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~-g~~~~~~~~~~~~~~~~~----------~~~~~~i~ispdg~  257 (345)
T PF10282_consen  189 PPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSD-GSLTEIQTISTLPEGFTG----------ENAPAEIAISPDGR  257 (345)
T ss_dssp             STTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTT-TEEEEEEEEESCETTSCS----------SSSEEEEEE-TTSS
T ss_pred             ccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccC-CceeEEEEeeeccccccc----------cCCceeEEEecCCC
Confidence            3466899999999986 99999999999998876211 2222221   11111111          24799999999996


Q ss_pred             -EEEEECCCCEEEEEc---C-CCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCC
Q 011333          156 -IYIADTMNMAIRKIS---D-SGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHF  230 (488)
Q Consensus       156 -LYVAD~~N~rIrkid---~-ggVttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g  230 (488)
                       |||+.++.+.|..|+   . +.++.+.-...              .-..|.++++.++...|||++...+.|..|+.+.
T Consensus       258 ~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~--------------~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~  323 (345)
T PF10282_consen  258 FLYVSNRGSNSISVFDLDPATGTLTLVQTVPT--------------GGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDP  323 (345)
T ss_dssp             EEEEEECTTTEEEEEEECTTTTTEEEEEEEEE--------------SSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEET
T ss_pred             EEEEEeccCCEEEEEEEecCCCceEEEEEEeC--------------CCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeC
Confidence             999999999888777   2 34544322111              0136999995455556999999999999888764


Q ss_pred             C
Q 011333          231 D  231 (488)
Q Consensus       231 ~  231 (488)
                      .
T Consensus       324 ~  324 (345)
T PF10282_consen  324 D  324 (345)
T ss_dssp             T
T ss_pred             C
Confidence            3

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=98.02  E-value=2.4e-05  Score=66.28  Aligned_cols=68  Identities=21%  Similarity=0.269  Sum_probs=50.0

Q ss_pred             ceEEEcCC-CcEEEEECC-----------------CCEEEEEc-CC-CcEEEeCCccCCCCCCCCCCcccccCCCCCeeE
Q 011333          146 KGLTVDDR-GNIYIADTM-----------------NMAIRKIS-DS-GVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVV  205 (488)
Q Consensus       146 ~GIAvD~d-G~LYVAD~~-----------------N~rIrkid-~g-gVttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa  205 (488)
                      ++|+|+++ |.|||+|..                 ++|+.+++ .. .+++++.+                 |..|+||+
T Consensus         1 ndldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~~-----------------L~fpNGVa   63 (89)
T PF03088_consen    1 NDLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLDG-----------------LYFPNGVA   63 (89)
T ss_dssp             -EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEEE-----------------ESSEEEEE
T ss_pred             CceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehhC-----------------CCccCeEE
Confidence            47999998 999999963                 46899999 33 36666643                 67899999


Q ss_pred             EECCCCeEEEEECCCCeEEEEEcCC
Q 011333          206 YIGSSCSLLVIDRGNRAIREIQLHF  230 (488)
Q Consensus       206 ~vd~~G~LYVaD~gN~rIrkI~~~g  230 (488)
                      +..+...|+|+++..+||.++.+.|
T Consensus        64 ls~d~~~vlv~Et~~~Ri~rywl~G   88 (89)
T PF03088_consen   64 LSPDESFVLVAETGRYRILRYWLKG   88 (89)
T ss_dssp             E-TTSSEEEEEEGGGTEEEEEESSS
T ss_pred             EcCCCCEEEEEeccCceEEEEEEeC
Confidence            6555556999999999999998876

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]

Probab=97.94  E-value=0.00013  Score=81.44  Aligned_cols=147  Identities=20%  Similarity=0.163  Sum_probs=104.4

Q ss_pred             CceeEEeecCCCCCCCceEEEEccC-CcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcce
Q 011333           69 GYTVETVFDGSKLGIEPYSVEVLPG-GELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKG  147 (488)
Q Consensus        69 G~~~~~~~~G~~~l~~P~GIaVd~d-G~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~G  147 (488)
                      |...++.++  .-|..|.|||||-- .++|-+|+.+.+|-+-..+|++   -..+.-.               -|-.|++
T Consensus      1056 G~Ep~ti~n--~~L~SPEGiAVDh~~Rn~ywtDS~lD~IevA~LdG~~---rkvLf~t---------------dLVNPR~ 1115 (1289)
T KOG1214|consen 1056 GAEPETIVN--SGLISPEGIAVDHIRRNMYWTDSVLDKIEVALLDGSE---RKVLFYT---------------DLVNPRA 1115 (1289)
T ss_pred             CCCCceeec--ccCCCccceeeeeccceeeeeccccchhheeecCCce---eeEEEee---------------cccCcce
Confidence            444455554  34679999999974 4699999999999888888743   1222211               1788999


Q ss_pred             EEEcC-CCcEEEEECC--CCEEEEEc-CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeE
Q 011333          148 LTVDD-RGNIYIADTM--NMAIRKIS-DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAI  223 (488)
Q Consensus       148 IAvD~-dG~LYVAD~~--N~rIrkid-~ggVttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rI  223 (488)
                      |++|+ .|+||-+|+.  |-.|-..+ +|.-..|.-.               ..+..|+||.+.+-+..|--+|.||+|+
T Consensus      1116 iv~D~~rgnLYwtDWnRenPkIets~mDG~NrRilin---------------~DigLPNGLtfdpfs~~LCWvDAGt~rl 1180 (1289)
T KOG1214|consen 1116 IVVDPIRGNLYWTDWNRENPKIETSSMDGENRRILIN---------------TDIGLPNGLTFDPFSKLLCWVDAGTKRL 1180 (1289)
T ss_pred             EEeecccCceeeccccccCCcceeeccCCccceEEee---------------cccCCCCCceeCcccceeeEEecCCcce
Confidence            99999 6799999985  55676666 5543222211               1245799999766677788889999999


Q ss_pred             EEEEcCCCceE-EeccCCCcceEEEEec
Q 011333          224 REIQLHFDDCA-YQYGSSFPLGIAVLLA  250 (488)
Q Consensus       224 rkI~~~g~~~~-~~~~~g~P~GIav~~g  250 (488)
                      -.+.++|.... .+.++-.|.+|.-...
T Consensus      1181 eC~~p~g~gRR~i~~~LqYPF~itsy~~ 1208 (1289)
T KOG1214|consen 1181 ECTLPDGTGRRVIQNNLQYPFSITSYAD 1208 (1289)
T ss_pred             eEecCCCCcchhhhhcccCceeeeeccc
Confidence            99999986443 4666677888876643

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=97.86  E-value=0.00027  Score=71.90  Aligned_cols=121  Identities=10%  Similarity=0.072  Sum_probs=79.5

Q ss_pred             CCceEEEEccCCc-EEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCC-cEEEEE
Q 011333           83 IEPYSVEVLPGGE-LLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRG-NIYIAD  160 (488)
Q Consensus        83 ~~P~GIaVd~dG~-LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG-~LYVAD  160 (488)
                      ..|.+|+++++|+ ||++....+.|..++.+..  +.+.......   .          ....|.+++++++| .+||++
T Consensus        80 ~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~--g~~~~~~~~~---~----------~~~~~~~~~~~p~g~~l~v~~  144 (330)
T PRK11028         80 GSPTHISTDHQGRFLFSASYNANCVSVSPLDKD--GIPVAPIQII---E----------GLEGCHSANIDPDNRTLWVPC  144 (330)
T ss_pred             CCceEEEECCCCCEEEEEEcCCCeEEEEEECCC--CCCCCceeec---c----------CCCcccEeEeCCCCCEEEEee
Confidence            4799999999987 8888887888888876521  1111111110   0          13468999999998 488999


Q ss_pred             CCCCEEEEEc-C-CC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcC
Q 011333          161 TMNMAIRKIS-D-SG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLH  229 (488)
Q Consensus       161 ~~N~rIrkid-~-gg-VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~  229 (488)
                      ...+.|..++ + .+ +..........           ..=..|.++++.++...|||++...+.|..++.+
T Consensus       145 ~~~~~v~v~d~~~~g~l~~~~~~~~~~-----------~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~  205 (330)
T PRK11028        145 LKEDRIRLFTLSDDGHLVAQEPAEVTT-----------VEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLK  205 (330)
T ss_pred             CCCCEEEEEEECCCCcccccCCCceec-----------CCCCCCceEEECCCCCEEEEEecCCCEEEEEEEe
Confidence            9999999998 3 22 21100000000           0013588999655455789999989999998886

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=97.80  E-value=0.002  Score=69.59  Aligned_cols=90  Identities=18%  Similarity=0.279  Sum_probs=59.4

Q ss_pred             cCCceeEEeecCCCCCCCceEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcc
Q 011333           67 ESGYTVETVFDGSKLGIEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPK  146 (488)
Q Consensus        67 ~dG~~~~~~~~G~~~l~~P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~  146 (488)
                      ..++..+....|   |..|++|++.+||+|||+....++|++++..+.   ....+.+.. ..       ........+.
T Consensus        17 p~~f~~~~va~G---L~~Pw~maflPDG~llVtER~~G~I~~v~~~~~---~~~~~~~l~-~v-------~~~~ge~GLl   82 (454)
T TIGR03606        17 SENFDKKVLLSG---LNKPWALLWGPDNQLWVTERATGKILRVNPETG---EVKVVFTLP-EI-------VNDAQHNGLL   82 (454)
T ss_pred             CCCcEEEEEECC---CCCceEEEEcCCCeEEEEEecCCEEEEEeCCCC---ceeeeecCC-ce-------eccCCCCcee
Confidence            345666665553   679999999999999999987789999987642   223333321 00       0001245688


Q ss_pred             eEEEcCCC-------cEEEEEC---------CCCEEEEEc
Q 011333          147 GLTVDDRG-------NIYIADT---------MNMAIRKIS  170 (488)
Q Consensus       147 GIAvD~dG-------~LYVAD~---------~N~rIrkid  170 (488)
                      |||++++-       .|||+=+         ...+|.++.
T Consensus        83 glal~PdF~~~~~n~~lYvsyt~~~~~~~~~~~~~I~R~~  122 (454)
T TIGR03606        83 GLALHPDFMQEKGNPYVYISYTYKNGDKELPNHTKIVRYT  122 (454)
T ss_pred             eEEECCCccccCCCcEEEEEEeccCCCCCccCCcEEEEEE
Confidence            99998763       6999832         146787776

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]

Probab=97.79  E-value=0.00097  Score=69.78  Aligned_cols=104  Identities=20%  Similarity=0.314  Sum_probs=74.9

Q ss_pred             CCcceEEEcCCC-cEEEEECCCCEEEEEc-CCCcE-EEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECC
Q 011333          143 NHPKGLTVDDRG-NIYIADTMNMAIRKIS-DSGVT-TIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRG  219 (488)
Q Consensus       143 n~P~GIAvD~dG-~LYVAD~~N~rIrkid-~ggVt-tIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~g  219 (488)
                      .+|.||+++..| +|||||.+ --+.+++ .++.. .++....+            ..+...+++. ++++|.||++|+.
T Consensus       115 GRPLGl~f~~~ggdL~VaDAY-lGL~~V~p~g~~a~~l~~~~~G------------~~~kf~N~ld-I~~~g~vyFTDSS  180 (376)
T KOG1520|consen  115 GRPLGIRFDKKGGDLYVADAY-LGLLKVGPEGGLAELLADEAEG------------KPFKFLNDLD-IDPEGVVYFTDSS  180 (376)
T ss_pred             CCcceEEeccCCCeEEEEecc-eeeEEECCCCCcceeccccccC------------eeeeecCcee-EcCCCeEEEeccc
Confidence            479999999988 99999974 4578888 56653 33332221            2455677888 6779999999974


Q ss_pred             -----------------CCeEEEEEcCCCce-EEeccCCCcceEEEEecCCceEEEEEE
Q 011333          220 -----------------NRAIREIQLHFDDC-AYQYGSSFPLGIAVLLAAGFFGYMLAL  260 (488)
Q Consensus       220 -----------------N~rIrkI~~~g~~~-~~~~~~g~P~GIav~~g~g~~Gy~~a~  260 (488)
                                       ++|+.++|+..... ....+..+|.|+++.....++.+.=+.
T Consensus       181 sk~~~rd~~~a~l~g~~~GRl~~YD~~tK~~~VLld~L~F~NGlaLS~d~sfvl~~Et~  239 (376)
T KOG1520|consen  181 SKYDRRDFVFAALEGDPTGRLFRYDPSTKVTKVLLDGLYFPNGLALSPDGSFVLVAETT  239 (376)
T ss_pred             cccchhheEEeeecCCCccceEEecCcccchhhhhhcccccccccCCCCCCEEEEEeec
Confidence                             36777777766544 446788899999999887776665433

>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]

Probab=97.78  E-value=0.00022  Score=79.84  Aligned_cols=134  Identities=17%  Similarity=0.143  Sum_probs=102.5

Q ss_pred             CceEEEEcc-CCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCC-cEEEEEC
Q 011333           84 EPYSVEVLP-GGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRG-NIYIADT  161 (488)
Q Consensus        84 ~P~GIaVd~-dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG-~LYVAD~  161 (488)
                      -|-||.+|- +-.+|-+|...+.|.+-+.+|   ++..+++.+.               |..|.|||||--+ |+|-+|+
T Consensus      1026 IiVGidfDC~e~mvyWtDv~g~SI~rasL~G---~Ep~ti~n~~---------------L~SPEGiAVDh~~Rn~ywtDS 1087 (1289)
T KOG1214|consen 1026 IIVGIDFDCRERMVYWTDVAGRSISRASLEG---AEPETIVNSG---------------LISPEGIAVDHIRRNMYWTDS 1087 (1289)
T ss_pred             eeeeeecccccceEEEeecCCCccccccccC---CCCceeeccc---------------CCCccceeeeeccceeeeecc
Confidence            356777775 566999999999999999987   5677776642               8899999999755 7999999


Q ss_pred             CCCEEEEEc-CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEEC--CCCeEEEEEcCCCceEE--e
Q 011333          162 MNMAIRKIS-DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDR--GNRAIREIQLHFDDCAY--Q  236 (488)
Q Consensus       162 ~N~rIrkid-~ggVttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~--gN~rIrkI~~~g~~~~~--~  236 (488)
                      .+.+|-+-. +|....+.-.               ..|.+|.+|++..-.|+||-+|+  .|-.|-..+++|+.-..  +
T Consensus      1088 ~lD~IevA~LdG~~rkvLf~---------------tdLVNPR~iv~D~~rgnLYwtDWnRenPkIets~mDG~NrRilin 1152 (1289)
T KOG1214|consen 1088 VLDKIEVALLDGSERKVLFY---------------TDLVNPRAIVVDPIRGNLYWTDWNRENPKIETSSMDGENRRILIN 1152 (1289)
T ss_pred             ccchhheeecCCceeeEEEe---------------ecccCcceEEeecccCceeeccccccCCcceeeccCCccceEEee
Confidence            999988776 5553222211               12678999996555899999997  57789999999865543  5


Q ss_pred             ccCCCcceEEEEec
Q 011333          237 YGSSFPLGIAVLLA  250 (488)
Q Consensus       237 ~~~g~P~GIav~~g  250 (488)
                      ...+.|.|+.++.-
T Consensus      1153 ~DigLPNGLtfdpf 1166 (1289)
T KOG1214|consen 1153 TDIGLPNGLTFDPF 1166 (1289)
T ss_pred             cccCCCCCceeCcc
Confidence            66789999988854

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=97.65  E-value=0.00098  Score=69.02  Aligned_cols=126  Identities=19%  Similarity=0.219  Sum_probs=76.1

Q ss_pred             CCCceEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCC----CcEE
Q 011333           82 GIEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDR----GNIY  157 (488)
Q Consensus        82 l~~P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~d----G~LY  157 (488)
                      |.+|++|++.|||+|||++. .++|++++.++..   ...+.....-.         ........|||++++    +.||
T Consensus         1 L~~P~~~a~~pdG~l~v~e~-~G~i~~~~~~g~~---~~~v~~~~~v~---------~~~~~gllgia~~p~f~~n~~lY   67 (331)
T PF07995_consen    1 LNNPRSMAFLPDGRLLVAER-SGRIWVVDKDGSL---KTPVADLPEVF---------ADGERGLLGIAFHPDFASNGYLY   67 (331)
T ss_dssp             ESSEEEEEEETTSCEEEEET-TTEEEEEETTTEE---CEEEEE-TTTB---------TSTTBSEEEEEE-TTCCCC-EEE
T ss_pred             CCCceEEEEeCCCcEEEEeC-CceEEEEeCCCcC---cceeccccccc---------ccccCCcccceeccccCCCCEEE
Confidence            35899999999999999999 8999999966421   12333221000         011345789999994    8899


Q ss_pred             EEECCC--------CEEEEEc--CC--C---cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECC---
Q 011333          158 IADTMN--------MAIRKIS--DS--G---VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRG---  219 (488)
Q Consensus       158 VAD~~N--------~rIrkid--~g--g---VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~g---  219 (488)
                      |+-+..        .+|.++.  .+  .   ..++..+...          .......-..|+ ++++|.|||+=-.   
T Consensus        68 v~~t~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~----------~~~~~H~g~~l~-fgpDG~LYvs~G~~~~  136 (331)
T PF07995_consen   68 VYYTNADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPD----------TSSGNHNGGGLA-FGPDGKLYVSVGDGGN  136 (331)
T ss_dssp             EEEEEE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-----------CSSSS-EEEEE-E-TTSEEEEEEB-TTT
T ss_pred             EEEEcccCCCCCcceeeEEEeccCCccccccceEEEEEeCC----------CCCCCCCCcccc-CCCCCcEEEEeCCCCC
Confidence            987632        4677666  33  1   2223221111          001223445677 7899999998532   


Q ss_pred             ----------CCeEEEEEcCCC
Q 011333          220 ----------NRAIREIQLHFD  231 (488)
Q Consensus       220 ----------N~rIrkI~~~g~  231 (488)
                                .+.|.+|+++|.
T Consensus       137 ~~~~~~~~~~~G~ilri~~dG~  158 (331)
T PF07995_consen  137 DDNAQDPNSLRGKILRIDPDGS  158 (331)
T ss_dssp             GGGGCSTTSSTTEEEEEETTSS
T ss_pred             cccccccccccceEEEecccCc
Confidence                      367999998874

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=97.39  E-value=0.012  Score=57.16  Aligned_cols=136  Identities=13%  Similarity=0.131  Sum_probs=83.8

Q ss_pred             CceEEEEccCCc-EEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCc-EEEEEC
Q 011333           84 EPYSVEVLPGGE-LLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-IYIADT  161 (488)
Q Consensus        84 ~P~GIaVd~dG~-LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~-LYVAD~  161 (488)
                      .|..++++++|. ||++....+.|+.++..+..  .+..+-...   .+.      ...-..|.+++++++|+ +|++..
T Consensus       158 ~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~--~~~~~~~~~---~~~------~~~~~~~~~i~~s~dg~~~~~~~~  226 (300)
T TIGR03866       158 RPRFAEFTADGKELWVSSEIGGTVSVIDVATRK--VIKKITFEI---PGV------HPEAVQPVGIKLTKDGKTAFVALG  226 (300)
T ss_pred             CccEEEECCCCCEEEEEcCCCCEEEEEEcCcce--eeeeeeecc---ccc------ccccCCccceEECCCCCEEEEEcC
Confidence            577888999987 55665556789999987532  112221110   000      00012588999999997 588877


Q ss_pred             CCCEEEEEc--CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCceEE-ecc
Q 011333          162 MNMAIRKIS--DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCAY-QYG  238 (488)
Q Consensus       162 ~N~rIrkid--~ggVttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g~~~~~-~~~  238 (488)
                      .+++|..++  .+.+......                 -..+.++++.+....||++....+.|..++.....+.. ...
T Consensus       227 ~~~~i~v~d~~~~~~~~~~~~-----------------~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~  289 (300)
T TIGR03866       227 PANRVAVVDAKTYEVLDYLLV-----------------GQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKV  289 (300)
T ss_pred             CCCeEEEEECCCCcEEEEEEe-----------------CCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEc
Confidence            788899998  3344322211                 01367888544444677777777899999998765532 223


Q ss_pred             CCCcceEEE
Q 011333          239 SSFPLGIAV  247 (488)
Q Consensus       239 ~g~P~GIav  247 (488)
                      ...|.+|++
T Consensus       290 ~~~~~~~~~  298 (300)
T TIGR03866       290 GRLPWGVVV  298 (300)
T ss_pred             ccccceeEe
Confidence            356777775

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=97.25  E-value=0.029  Score=58.19  Aligned_cols=145  Identities=15%  Similarity=0.190  Sum_probs=90.4

Q ss_pred             CCCCCceEEEEccCCc-EEEEECCCCeEEEEeCCC--CcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCc-
Q 011333           80 KLGIEPYSVEVLPGGE-LLILDSANSNLYRISSSL--SLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-  155 (488)
Q Consensus        80 ~~l~~P~GIaVd~dG~-LYVaD~~n~rI~kid~~g--~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~-  155 (488)
                      +.+..|.-|++.|+|. .|+..--|+.|-.+.-+.  +.+.++.++.--+..+.|          -+.-..|.++++|+ 
T Consensus       188 ~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g----------~~~~aaIhis~dGrF  257 (346)
T COG2706         188 KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTG----------TNWAAAIHISPDGRF  257 (346)
T ss_pred             CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCC----------CCceeEEEECCCCCE
Confidence            4466899999999998 888888888887776553  333334444333344444          24455799999997 


Q ss_pred             EEEEECCCCEEEEEc---CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCC
Q 011333          156 IYIADTMNMAIRKIS---DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFD  231 (488)
Q Consensus       156 LYVAD~~N~rIrkid---~gg-VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g~  231 (488)
                      ||++|++-+.|..+.   +++ +.++.-...              .-..|.+..+.+....|+++....+.|.++..+..
T Consensus       258 LYasNRg~dsI~~f~V~~~~g~L~~~~~~~t--------------eg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~  323 (346)
T COG2706         258 LYASNRGHDSIAVFSVDPDGGKLELVGITPT--------------EGQFPRDFNINPSGRFLIAANQKSDNITVFERDKE  323 (346)
T ss_pred             EEEecCCCCeEEEEEEcCCCCEEEEEEEecc--------------CCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCC
Confidence            999999988777655   445 443332111              12357777744445567777776677777776654


Q ss_pred             ceEE---eccCCCcceEEEE
Q 011333          232 DCAY---QYGSSFPLGIAVL  248 (488)
Q Consensus       232 ~~~~---~~~~g~P~GIav~  248 (488)
                      .+..   ..-...|..+|+.
T Consensus       324 TG~L~~~~~~~~~p~Pvcv~  343 (346)
T COG2706         324 TGRLTLLGRYAVVPEPVCVK  343 (346)
T ss_pred             CceEEecccccCCCCcEEEE
Confidence            3332   1222345556654

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.10  E-value=0.0017  Score=64.94  Aligned_cols=77  Identities=25%  Similarity=0.399  Sum_probs=45.7

Q ss_pred             CCCceEEEEcc-CCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEE
Q 011333           82 GIEPYSVEVLP-GGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIAD  160 (488)
Q Consensus        82 l~~P~GIaVd~-dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD  160 (488)
                      ...|.++++++ .|+|||....+++|..++.+|...+...+..    |..|      ....+.+|.|||+|++|+|||+.
T Consensus       170 ~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~----g~~g------l~~~~~QpEGIa~d~~G~LYIvs  239 (248)
T PF06977_consen  170 VRDLSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSSLSLDR----GFHG------LSKDIPQPEGIAFDPDGNLYIVS  239 (248)
T ss_dssp             SS---EEEEETTTTEEEEEETTTTEEEEE-TT--EEEEEE-ST----TGGG-------SS---SEEEEEE-TT--EEEEE
T ss_pred             eccccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEEEEeCC----cccC------cccccCCccEEEECCCCCEEEEc
Confidence            45799999998 6889999999999999998863322222221    2222      22458899999999999999998


Q ss_pred             CCCCEEEEE
Q 011333          161 TMNMAIRKI  169 (488)
Q Consensus       161 ~~N~rIrki  169 (488)
                      --| ...+|
T Consensus       240 EpN-lfy~f  247 (248)
T PF06977_consen  240 EPN-LFYRF  247 (248)
T ss_dssp             TTT-EEEEE
T ss_pred             CCc-eEEEe
Confidence            644 55554

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=96.97  E-value=0.037  Score=56.39  Aligned_cols=152  Identities=18%  Similarity=0.132  Sum_probs=86.2

Q ss_pred             CceEEEEccCCcEEEEECCC------------CeEEEEeCCCCcccccEEEe-cCCCCccccCCCcccccccCCcceEEE
Q 011333           84 EPYSVEVLPGGELLILDSAN------------SNLYRISSSLSLYSRPKLVA-GSAEGYSGHVDGKPREARMNHPKGLTV  150 (488)
Q Consensus        84 ~P~GIaVd~dG~LYVaD~~n------------~rI~kid~~g~~~g~i~tva-G~~~G~~G~~dG~a~~a~Ln~P~GIAv  150 (488)
                      +..++.+|..|.|||.|.+.            -+|+.||..+..  .+.++. ... -.          ..-..-+.|+|
T Consensus         2 sV~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~--li~~~~~p~~-~~----------~~~s~lndl~V   68 (287)
T PF03022_consen    2 SVQRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQ--LIRRYPFPPD-IA----------PPDSFLNDLVV   68 (287)
T ss_dssp             -EEEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTC--EEEEEE--CC-CS-----------TCGGEEEEEE
T ss_pred             cccEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCc--EEEEEECChH-Hc----------ccccccceEEE
Confidence            45789999999999999874            489999998643  222221 110 00          01123567888


Q ss_pred             cCC------CcEEEEECCCCEEEEEc--CCCcEEEe---------------CCcc-----C----------CC-------
Q 011333          151 DDR------GNIYIADTMNMAIRKIS--DSGVTTIA---------------GGKW-----G----------RG-------  185 (488)
Q Consensus       151 D~d------G~LYVAD~~N~rIrkid--~ggVttIa---------------Gg~~-----g----------~~-------  185 (488)
                      |..      +-+||+|.....|.++|  ++...-+.               ++..     +          ..       
T Consensus        69 D~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~  148 (287)
T PF03022_consen   69 DVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFH  148 (287)
T ss_dssp             ECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEE
T ss_pred             EccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEE
Confidence            862      46999999888887777  32221111               1100     0          00       


Q ss_pred             --CCC----------CCCCc-ccc----cC-------CCCCeeEEECCCCeEEEEECCCCeEEEEEcCC-----CceE--
Q 011333          186 --GGH----------VDGPS-EDA----KF-------SNDFDVVYIGSSCSLLVIDRGNRAIREIQLHF-----DDCA--  234 (488)
Q Consensus       186 --~g~----------~dG~~-~~a----~f-------~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g-----~~~~--  234 (488)
                        ++.          .+... .+.    .+       ..-.+++ .|++|+||+++..++.|.+++.++     +...  
T Consensus       149 ~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~-~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~  227 (287)
T PF03022_consen  149 PLSSRKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMA-IDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILA  227 (287)
T ss_dssp             ETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEE-EETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEE
T ss_pred             eCCCCcEEEEEHHHhhCccccccccccccceeccccCCCCceEE-ECCCCcEEEecCCCCeEEEEeCCCCcCccchheeE
Confidence              000          01100 011    11       1335666 789999999999999999999998     2222  


Q ss_pred             Eecc-CCCcceEEEEe
Q 011333          235 YQYG-SSFPLGIAVLL  249 (488)
Q Consensus       235 ~~~~-~g~P~GIav~~  249 (488)
                      .... .-+|.+++++.
T Consensus       228 ~d~~~l~~pd~~~i~~  243 (287)
T PF03022_consen  228 QDPRTLQWPDGLKIDP  243 (287)
T ss_dssp             E-CC-GSSEEEEEE-T
T ss_pred             EcCceeeccceeeecc
Confidence            2223 56899999985

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=96.93  E-value=0.071  Score=51.66  Aligned_cols=118  Identities=14%  Similarity=0.229  Sum_probs=73.6

Q ss_pred             CcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCc-EEEEECCCCEEEEEc-C
Q 011333           94 GELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-IYIADTMNMAIRKIS-D  171 (488)
Q Consensus        94 G~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~-LYVAD~~N~rIrkid-~  171 (488)
                      +++|++...++.|.+++..++.  .+.++.+                 -..|.+++++++|. +|++....+.|+.++ .
T Consensus         1 ~~~~~s~~~d~~v~~~d~~t~~--~~~~~~~-----------------~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~   61 (300)
T TIGR03866         1 EKAYVSNEKDNTISVIDTATLE--VTRTFPV-----------------GQRPRGITLSKDGKLLYVCASDSDTIQVIDLA   61 (300)
T ss_pred             CcEEEEecCCCEEEEEECCCCc--eEEEEEC-----------------CCCCCceEECCCCCEEEEEECCCCeEEEEECC
Confidence            4688888888899999876421  2222221                 12367899999986 788888888999999 3


Q ss_pred             -CCcE-EEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCC-eEEEEECCCCeEEEEEcCCCceEEecc-CCCcceEEE
Q 011333          172 -SGVT-TIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSC-SLLVIDRGNRAIREIQLHFDDCAYQYG-SSFPLGIAV  247 (488)
Q Consensus       172 -ggVt-tIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G-~LYVaD~gN~rIrkI~~~g~~~~~~~~-~g~P~GIav  247 (488)
                       +.+. ++..+                  ..|..+++ ++++ .||++....+.|+.+++....+..... ...|.++++
T Consensus        62 ~~~~~~~~~~~------------------~~~~~~~~-~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~  122 (300)
T TIGR03866        62 TGEVIGTLPSG------------------PDPELFAL-HPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAV  122 (300)
T ss_pred             CCcEEEeccCC------------------CCccEEEE-CCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEE
Confidence             3332 22111                  12456674 4444 578887777899999987644332221 234666666


Q ss_pred             Ee
Q 011333          248 LL  249 (488)
Q Consensus       248 ~~  249 (488)
                      ..
T Consensus       123 ~~  124 (300)
T TIGR03866       123 SP  124 (300)
T ss_pred             CC
Confidence            53

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=96.87  E-value=0.013  Score=58.61  Aligned_cols=124  Identities=10%  Similarity=0.118  Sum_probs=64.1

Q ss_pred             ceEEEEccC-CcEEEEE-CCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcC-CCcEEEEEC
Q 011333           85 PYSVEVLPG-GELLILD-SANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDD-RGNIYIADT  161 (488)
Q Consensus        85 P~GIaVd~d-G~LYVaD-~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~-dG~LYVAD~  161 (488)
                      -.||+.|+. +.||++- ..-.+|+.++..... ..+......  ...      .....+..|.+|++|+ .|+|||-..
T Consensus       120 ~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~-~~~~~~~~~--~~~------~~~~~~~d~S~l~~~p~t~~lliLS~  190 (248)
T PF06977_consen  120 FEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGG-FDLFVSDDQ--DLD------DDKLFVRDLSGLSYDPRTGHLLILSD  190 (248)
T ss_dssp             -EEEEEETTTTEEEEEEESSSEEEEEEESTT-S-S--EEEE-H--HHH-------HT--SS---EEEEETTTTEEEEEET
T ss_pred             eEEEEEcCCCCEEEEEeCCCChhhEEEccccCc-cceeecccc--ccc------cccceeccccceEEcCCCCeEEEEEC
Confidence            579999985 5677774 322457777651100 111111110  000      1223467899999998 578999999


Q ss_pred             CCCEEEEEc-CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEE
Q 011333          162 MNMAIRKIS-DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREI  226 (488)
Q Consensus       162 ~N~rIrkid-~ggVttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI  226 (488)
                      .+++|..+| +|.+........+.       ......+..|-||| +|++|+|||+.--| +..+|
T Consensus       191 es~~l~~~d~~G~~~~~~~L~~g~-------~gl~~~~~QpEGIa-~d~~G~LYIvsEpN-lfy~f  247 (248)
T PF06977_consen  191 ESRLLLELDRQGRVVSSLSLDRGF-------HGLSKDIPQPEGIA-FDPDGNLYIVSEPN-LFYRF  247 (248)
T ss_dssp             TTTEEEEE-TT--EEEEEE-STTG-------GG-SS---SEEEEE-E-TT--EEEEETTT-EEEEE
T ss_pred             CCCeEEEECCCCCEEEEEEeCCcc-------cCcccccCCccEEE-ECCCCCEEEEcCCc-eEEEe
Confidence            999999999 66643222211111       01223578899999 78999999998744 66665

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function

Probab=96.82  E-value=0.014  Score=64.37  Aligned_cols=83  Identities=25%  Similarity=0.328  Sum_probs=54.2

Q ss_pred             CCCCCceEEEEcc-CCcEEEEECCCC-------------------eEEEEeCCCCc----ccccE--EEecCCCCccccC
Q 011333           80 KLGIEPYSVEVLP-GGELLILDSANS-------------------NLYRISSSLSL----YSRPK--LVAGSAEGYSGHV  133 (488)
Q Consensus        80 ~~l~~P~GIaVd~-dG~LYVaD~~n~-------------------rI~kid~~g~~----~g~i~--tvaG~~~G~~G~~  133 (488)
                      ..+..|.+|++++ +|.|||+-+.++                   +|+++++.+..    ..++.  .++|.........
T Consensus       347 T~f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~~~~~~~  426 (524)
T PF05787_consen  347 TPFDRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAATTFTWELFLVGGDPTDASGNG  426 (524)
T ss_pred             ccccCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCccccceeEEEEEEEecCcccccccc
Confidence            3467999999998 689999976655                   89999987530    01222  3333211111111


Q ss_pred             CCcccccccCCcceEEEcCCCcEEEEECC
Q 011333          134 DGKPREARMNHPKGLTVDDRGNIYIADTM  162 (488)
Q Consensus       134 dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~  162 (488)
                      .+......|..|-+|++|++|+|||+.-.
T Consensus       427 ~~~~~~~~f~sPDNL~~d~~G~LwI~eD~  455 (524)
T PF05787_consen  427 SNKCDDNGFASPDNLAFDPDGNLWIQEDG  455 (524)
T ss_pred             cCcccCCCcCCCCceEECCCCCEEEEeCC
Confidence            22234556999999999999999997544

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=96.66  E-value=0.041  Score=56.51  Aligned_cols=116  Identities=18%  Similarity=0.223  Sum_probs=76.0

Q ss_pred             eEEEEcc---CCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEE--
Q 011333           86 YSVEVLP---GGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIAD--  160 (488)
Q Consensus        86 ~GIaVd~---dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD--  160 (488)
                      .|+|+..   ...||.+|..+++|-++|.+-    ....+.|.+.      | +...+ =-.|.+|..- .|+|||+=  
T Consensus       141 kGLAi~~~~~~~~LYaadF~~g~IDVFd~~f----~~~~~~g~F~------D-P~iPa-gyAPFnIqni-g~~lyVtYA~  207 (336)
T TIGR03118       141 KGLAVGPTGGGDYLYAANFRQGRIDVFKGSF----RPPPLPGSFI------D-PALPA-GYAPFNVQNL-GGTLYVTYAQ  207 (336)
T ss_pred             eeeEEeecCCCceEEEeccCCCceEEecCcc----ccccCCCCcc------C-CCCCC-CCCCcceEEE-CCeEEEEEEe
Confidence            5777764   345999999999999998763    2223334321      1 00001 1246677654 57899862  


Q ss_pred             -----------CCCCEEEEEc-CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECC-----CCeEEEEECCCCe
Q 011333          161 -----------TMNMAIRKIS-DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGS-----SCSLLVIDRGNRA  222 (488)
Q Consensus       161 -----------~~N~rIrkid-~gg-VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~-----~G~LYVaD~gN~r  222 (488)
                                 .+...|-+|+ +|. +..++.+               ..|+.||+||..+.     +|.|+|.+.+.++
T Consensus       208 qd~~~~d~v~G~G~G~VdvFd~~G~l~~r~as~---------------g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~  272 (336)
T TIGR03118       208 QDADRNDEVAGAGLGYVNVFTLNGQLLRRVASS---------------GRLNAPWGLAIAPESFGSLSGALLVGNFGDGT  272 (336)
T ss_pred             cCCcccccccCCCcceEEEEcCCCcEEEEeccC---------------CcccCCceeeeChhhhCCCCCCeEEeecCCce
Confidence                       2345677777 444 4445432               35999999994332     6799999999999


Q ss_pred             EEEEEcC
Q 011333          223 IREIQLH  229 (488)
Q Consensus       223 IrkI~~~  229 (488)
                      |..+|+.
T Consensus       273 InaFD~~  279 (336)
T TIGR03118       273 INAYDPQ  279 (336)
T ss_pred             eEEecCC
Confidence            9999986

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=96.40  E-value=0.13  Score=54.09  Aligned_cols=113  Identities=15%  Similarity=0.095  Sum_probs=72.3

Q ss_pred             CcEEEEECC----CCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCC-cEEEEEC-------
Q 011333           94 GELLILDSA----NSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRG-NIYIADT-------  161 (488)
Q Consensus        94 G~LYVaD~~----n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG-~LYVAD~-------  161 (488)
                      .++||.|..    .++|.+||.+...  .+.++..                 =..|+++ +.+|| .||||.+       
T Consensus        13 ~~v~V~d~~~~~~~~~v~ViD~~~~~--v~g~i~~-----------------G~~P~~~-~spDg~~lyva~~~~~R~~~   72 (352)
T TIGR02658        13 RRVYVLDPGHFAATTQVYTIDGEAGR--VLGMTDG-----------------GFLPNPV-VASDGSFFAHASTVYSRIAR   72 (352)
T ss_pred             CEEEEECCcccccCceEEEEECCCCE--EEEEEEc-----------------cCCCcee-ECCCCCEEEEEecccccccc
Confidence            459999986    3899999987521  1222211                 1258897 89988 5999999       


Q ss_pred             --CCCEEEEEcCCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECC-CCeEEEEEcCCCce
Q 011333          162 --MNMAIRKISDSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRG-NRAIREIQLHFDDC  233 (488)
Q Consensus       162 --~N~rIrkid~ggVttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~g-N~rIrkI~~~g~~~  233 (488)
                        ..+.|..||......+.....+.       .+.......|..+++.++...|||++.. .+.|-+||+.....
T Consensus        73 G~~~d~V~v~D~~t~~~~~~i~~p~-------~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kv  140 (352)
T TIGR02658        73 GKRTDYVEVIDPQTHLPIADIELPE-------GPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAF  140 (352)
T ss_pred             CCCCCEEEEEECccCcEEeEEccCC-------CchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcE
Confidence              78899999943322222111000       0011124567888854444479999966 89999999886444

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=96.35  E-value=0.024  Score=56.30  Aligned_cols=82  Identities=20%  Similarity=0.289  Sum_probs=56.8

Q ss_pred             CceEEEEccCC-cEEEEECCCCeEEEEe--CCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEE
Q 011333           84 EPYSVEVLPGG-ELLILDSANSNLYRIS--SSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIAD  160 (488)
Q Consensus        84 ~P~GIaVd~dG-~LYVaD~~n~rI~kid--~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD  160 (488)
                      -|.||+.|.+- .+|+.|+.|..|-.++  ..++.+.....+..-....       ..+  =-.|.|+++|.+|+||||-
T Consensus       159 IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~-------~~e--~~~PDGm~ID~eG~L~Va~  229 (310)
T KOG4499|consen  159 ISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQ-------PFE--SLEPDGMTIDTEGNLYVAT  229 (310)
T ss_pred             CCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCC-------CcC--CCCCCcceEccCCcEEEEE
Confidence            57899988654 4999999999995444  5565444444444321100       001  1248899999999999999


Q ss_pred             CCCCEEEEEc--CCCc
Q 011333          161 TMNMAIRKIS--DSGV  174 (488)
Q Consensus       161 ~~N~rIrkid--~ggV  174 (488)
                      ....+|.+++  +|.+
T Consensus       230 ~ng~~V~~~dp~tGK~  245 (310)
T KOG4499|consen  230 FNGGTVQKVDPTTGKI  245 (310)
T ss_pred             ecCcEEEEECCCCCcE
Confidence            9999999999  4443

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=96.28  E-value=0.16  Score=50.62  Aligned_cols=79  Identities=14%  Similarity=0.233  Sum_probs=56.6

Q ss_pred             cCCcceEEEcCCC-cEEEEECCCCEEEEE--c-CCC-c---EEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeE
Q 011333          142 MNHPKGLTVDDRG-NIYIADTMNMAIRKI--S-DSG-V---TTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSL  213 (488)
Q Consensus       142 Ln~P~GIAvD~dG-~LYVAD~~N~rIrki--d-~gg-V---ttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~L  213 (488)
                      +.-|+||+.|.+- .+|+.|+.|..|..+  + .++ +   ..|.......        +.+.  ..|-|++ +|.+|+|
T Consensus       157 v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~--------~~e~--~~PDGm~-ID~eG~L  225 (310)
T KOG4499|consen  157 VGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQ--------PFES--LEPDGMT-IDTEGNL  225 (310)
T ss_pred             ccCCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCC--------CcCC--CCCCcce-EccCCcE
Confidence            5679999999876 599999999999544  4 333 2   2232221111        1111  2588999 7999999


Q ss_pred             EEEECCCCeEEEEEcCCC
Q 011333          214 LVIDRGNRAIREIQLHFD  231 (488)
Q Consensus       214 YVaD~gN~rIrkI~~~g~  231 (488)
                      |||-.+.++|+++++...
T Consensus       226 ~Va~~ng~~V~~~dp~tG  243 (310)
T KOG4499|consen  226 YVATFNGGTVQKVDPTTG  243 (310)
T ss_pred             EEEEecCcEEEEECCCCC
Confidence            999999999999998754

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=96.23  E-value=0.12  Score=56.03  Aligned_cols=30  Identities=13%  Similarity=0.182  Sum_probs=22.9

Q ss_pred             cCCCCCeeEEECCCCeEEEEECCC---CeEEEEE
Q 011333          197 KFSNDFDVVYIGSSCSLLVIDRGN---RAIREIQ  227 (488)
Q Consensus       197 ~f~~P~gIa~vd~~G~LYVaD~gN---~rIrkI~  227 (488)
                      -+.+|.+++ ++++|.||++|-+-   ..|.+|.
T Consensus       228 G~RNp~Gla-~dp~G~Lw~~e~Gp~~~DEiN~I~  260 (454)
T TIGR03606       228 GHRNPQGLA-FTPDGTLYASEQGPNSDDELNIIV  260 (454)
T ss_pred             eccccceeE-ECCCCCEEEEecCCCCCcEEEEec
Confidence            478999999 67799999999765   3455544

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=96.13  E-value=0.4  Score=49.96  Aligned_cols=163  Identities=14%  Similarity=0.172  Sum_probs=101.7

Q ss_pred             CceEEEEccCCc-EEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCc-EEEEEC
Q 011333           84 EPYSVEVLPGGE-LLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-IYIADT  161 (488)
Q Consensus        84 ~P~GIaVd~dG~-LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~-LYVAD~  161 (488)
                      +++..-++|+|+ |+++|-+..||..++.+-   |.+. .+....-..           =..|+-|++.++|. .|+.--
T Consensus       146 h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~d---g~L~-~~~~~~v~~-----------G~GPRHi~FHpn~k~aY~v~E  210 (346)
T COG2706         146 HVHSANFTPDGRYLVVPDLGTDRIFLYDLDD---GKLT-PADPAEVKP-----------GAGPRHIVFHPNGKYAYLVNE  210 (346)
T ss_pred             ccceeeeCCCCCEEEEeecCCceEEEEEccc---Cccc-cccccccCC-----------CCCcceEEEcCCCcEEEEEec
Confidence            367777899995 888999999999999873   2221 111110111           13589999999996 888888


Q ss_pred             CCCEEEEEc--C--CCcEE---EeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCce-
Q 011333          162 MNMAIRKIS--D--SGVTT---IAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDC-  233 (488)
Q Consensus       162 ~N~rIrkid--~--ggVtt---IaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g~~~-  233 (488)
                      -|+.|-.+.  +  +.+..   +...+..+           ..-++-..|.+..+..-||++|++.+.|..+..+.... 
T Consensus       211 L~stV~v~~y~~~~g~~~~lQ~i~tlP~dF-----------~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~  279 (346)
T COG2706         211 LNSTVDVLEYNPAVGKFEELQTIDTLPEDF-----------TGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGK  279 (346)
T ss_pred             cCCEEEEEEEcCCCceEEEeeeeccCcccc-----------CCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCE
Confidence            899888776  3  33433   33222221           01233456774444446999999999998887765432 


Q ss_pred             -EE---e-ccCCCcceEEEEecCCceEEEEEEEEeccceEEeccCCC
Q 011333          234 -AY---Q-YGSSFPLGIAVLLAAGFFGYMLALLQRRVGTIVSSQNDH  275 (488)
Q Consensus       234 -~~---~-~~~g~P~GIav~~g~g~~Gy~~a~l~~~~g~~~~s~~~~  275 (488)
                       ..   . ...-+|.++.+..++   .++.|.-|.-....+...+.+
T Consensus       280 L~~~~~~~teg~~PR~F~i~~~g---~~Liaa~q~sd~i~vf~~d~~  323 (346)
T COG2706         280 LELVGITPTEGQFPRDFNINPSG---RFLIAANQKSDNITVFERDKE  323 (346)
T ss_pred             EEEEEEeccCCcCCccceeCCCC---CEEEEEccCCCcEEEEEEcCC
Confidence             11   2 222358888887542   345666666666666665554

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=95.82  E-value=0.049  Score=56.47  Aligned_cols=78  Identities=14%  Similarity=0.147  Sum_probs=53.3

Q ss_pred             cCCcceEEEcCCCcEEEEECCCCEEEEEc-CCCc-EEEeCCccCCCCCCCCCCcccccCCCCCeeEEECC----CCeEEE
Q 011333          142 MNHPKGLTVDDRGNIYIADTMNMAIRKIS-DSGV-TTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGS----SCSLLV  215 (488)
Q Consensus       142 Ln~P~GIAvD~dG~LYVAD~~N~rIrkid-~ggV-ttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~----~G~LYV  215 (488)
                      |+.|++|++.++|.|||++. ..+|+.++ ++.. ..+.......          ........+|| +++    ++.|||
T Consensus         1 L~~P~~~a~~pdG~l~v~e~-~G~i~~~~~~g~~~~~v~~~~~v~----------~~~~~gllgia-~~p~f~~n~~lYv   68 (331)
T PF07995_consen    1 LNNPRSMAFLPDGRLLVAER-SGRIWVVDKDGSLKTPVADLPEVF----------ADGERGLLGIA-FHPDFASNGYLYV   68 (331)
T ss_dssp             ESSEEEEEEETTSCEEEEET-TTEEEEEETTTEECEEEEE-TTTB----------TSTTBSEEEEE-E-TTCCCC-EEEE
T ss_pred             CCCceEEEEeCCCcEEEEeC-CceEEEEeCCCcCcceeccccccc----------ccccCCcccce-eccccCCCCEEEE
Confidence            57899999999999999998 99999999 5554 4444322111          11123568899 555    589999


Q ss_pred             EECCC--------CeEEEEEcCCC
Q 011333          216 IDRGN--------RAIREIQLHFD  231 (488)
Q Consensus       216 aD~gN--------~rIrkI~~~g~  231 (488)
                      +-+..        .+|.++.....
T Consensus        69 ~~t~~~~~~~~~~~~v~r~~~~~~   92 (331)
T PF07995_consen   69 YYTNADEDGGDNDNRVVRFTLSDG   92 (331)
T ss_dssp             EEEEE-TSSSSEEEEEEEEEEETT
T ss_pred             EEEcccCCCCCcceeeEEEeccCC
Confidence            98732        57777777654

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=95.69  E-value=0.59  Score=49.35  Aligned_cols=135  Identities=17%  Similarity=0.168  Sum_probs=74.8

Q ss_pred             ceEEEEccCCc-EEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCc-EEEEECC
Q 011333           85 PYSVEVLPGGE-LLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-IYIADTM  162 (488)
Q Consensus        85 P~GIaVd~dG~-LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~-LYVAD~~  162 (488)
                      +.++++.+||. +||++. .+.|.+||....+  .+..+.-                 =..|.||++++||+ +|++...
T Consensus        39 h~~~~~s~Dgr~~yv~~r-dg~vsviD~~~~~--~v~~i~~-----------------G~~~~~i~~s~DG~~~~v~n~~   98 (369)
T PF02239_consen   39 HAGLKFSPDGRYLYVANR-DGTVSVIDLATGK--VVATIKV-----------------GGNPRGIAVSPDGKYVYVANYE   98 (369)
T ss_dssp             EEEEE-TT-SSEEEEEET-TSEEEEEETTSSS--EEEEEE------------------SSEEEEEEE--TTTEEEEEEEE
T ss_pred             eeEEEecCCCCEEEEEcC-CCeEEEEECCccc--EEEEEec-----------------CCCcceEEEcCCCCEEEEEecC
Confidence            34567788887 999986 5799999998532  2223311                 12489999999996 8999999


Q ss_pred             CCEEEEEcCCC---cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCc-e--EEe
Q 011333          163 NMAIRKISDSG---VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDD-C--AYQ  236 (488)
Q Consensus       163 N~rIrkid~gg---VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g~~-~--~~~  236 (488)
                      .+.+..+|...   +.+|..+....     ++     .=..+.+|...+.....+|+-...+.|+.++..... .  ...
T Consensus        99 ~~~v~v~D~~tle~v~~I~~~~~~~-----~~-----~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i  168 (369)
T PF02239_consen   99 PGTVSVIDAETLEPVKTIPTGGMPV-----DG-----PESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTI  168 (369)
T ss_dssp             TTEEEEEETTT--EEEEEE--EE-T-----TT-----S---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEE
T ss_pred             CCceeEeccccccceeecccccccc-----cc-----cCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeee
Confidence            99999999433   45554322110     00     111234554334444455566677888888755421 1  112


Q ss_pred             ccCCCcceEEEEe
Q 011333          237 YGSSFPLGIAVLL  249 (488)
Q Consensus       237 ~~~g~P~GIav~~  249 (488)
                      ....+|.+..++.
T Consensus       169 ~~g~~~~D~~~dp  181 (369)
T PF02239_consen  169 KVGRFPHDGGFDP  181 (369)
T ss_dssp             E--TTEEEEEE-T
T ss_pred             cccccccccccCc
Confidence            2233566666664

...

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=95.23  E-value=0.46  Score=49.10  Aligned_cols=134  Identities=19%  Similarity=0.259  Sum_probs=75.3

Q ss_pred             CceEEEEccCCcEEEEECCC------CeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCc-E
Q 011333           84 EPYSVEVLPGGELLILDSAN------SNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-I  156 (488)
Q Consensus        84 ~P~GIaVd~dG~LYVaD~~n------~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~-L  156 (488)
                      .+.||++.++|.+||++-+.      ++|++++.+|..   +..+ --+....-...+......=....|||+.++|. |
T Consensus        86 D~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~G~~---~~~~-~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l  161 (326)
T PF13449_consen   86 DPEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLDGRV---IRRF-PVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTL  161 (326)
T ss_pred             ChhHeEEecCCCEEEEeCCccCCCCCCEEEEECCCCcc---cceE-ccccccccccCccccccCCCCeEEEEECCCCCEE
Confidence            78899998899999999999      999999998532   1222 10111100000000001113467999999998 8


Q ss_pred             EEEECC---------------CCEEEEEcCC--C--cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEE
Q 011333          157 YIADTM---------------NMAIRKISDS--G--VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVID  217 (488)
Q Consensus       157 YVAD~~---------------N~rIrkid~g--g--VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD  217 (488)
                      |++--.               ..||.+++..  +  +..++--        .+.......-..+.++++ -+++.|+|.+
T Consensus       162 ~~~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~--------ld~~~~~~~~~~isd~~a-l~d~~lLvLE  232 (326)
T PF13449_consen  162 FAAMESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYP--------LDPPPTAPGDNGISDIAA-LPDGRLLVLE  232 (326)
T ss_pred             EEEECccccCCCcccccccCceEEEEEecCCCCCccceEEEEe--------CCccccccCCCCceeEEE-ECCCcEEEEE
Confidence            876321               1456666621  2  1111100        000000002346778884 5677899999


Q ss_pred             CC-------CCeEEEEEcCC
Q 011333          218 RG-------NRAIREIQLHF  230 (488)
Q Consensus       218 ~g-------N~rIrkI~~~g  230 (488)
                      +.       ..+|+++++..
T Consensus       233 R~~~~~~~~~~ri~~v~l~~  252 (326)
T PF13449_consen  233 RDFSPGTGNYKRIYRVDLSD  252 (326)
T ss_pred             ccCCCCccceEEEEEEEccc
Confidence            87       34677777653

>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]

Probab=95.23  E-value=0.28  Score=52.44  Aligned_cols=134  Identities=19%  Similarity=0.272  Sum_probs=78.3

Q ss_pred             CCCceEEEEccC-CcEEEEECCCCeEEEE-----eCCCCcccccEEEecCCCCcccc--CCCccccccc----------C
Q 011333           82 GIEPYSVEVLPG-GELLILDSANSNLYRI-----SSSLSLYSRPKLVAGSAEGYSGH--VDGKPREARM----------N  143 (488)
Q Consensus        82 l~~P~GIaVd~d-G~LYVaD~~n~rI~ki-----d~~g~~~g~i~tvaG~~~G~~G~--~dG~a~~a~L----------n  143 (488)
                      ..||.|++++|. |.||++|.+...++--     -..|+.+|=.....|.  ...|.  .++. ..+.+          -
T Consensus       238 ~RN~qGl~w~P~tg~Lw~~e~g~d~~~~~Deln~i~~G~nYGWP~~~~G~--~~~g~~~~~~~-~~~~~~~p~~~~~~h~  314 (399)
T COG2133         238 HRNPQGLAWHPVTGALWTTEHGPDALRGPDELNSIRPGKNYGWPYAYFGQ--NYDGRAIPDGT-VVAGAIQPVYTWAPHI  314 (399)
T ss_pred             cCCccceeecCCCCcEEEEecCCCcccCcccccccccCCccCCceeccCc--ccCccccCCCc-ccccccCCceeecccc
Confidence            458999999995 9999999887444111     1122223322222221  11111  0111 11111          3


Q ss_pred             CcceEEEcCC-------CcEEEEECCCCEEEEEc-CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEE
Q 011333          144 HPKGLTVDDR-------GNIYIADTMNMAIRKIS-DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLV  215 (488)
Q Consensus       144 ~P~GIAvD~d-------G~LYVAD~~N~rIrkid-~ggVttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYV  215 (488)
                      .|.||+|-.-       |.+||+--..-.+.+.+ +++...+..+.-.   +  |      .--.|.+|+ +..||.|||
T Consensus       315 ApsGmaFy~G~~fP~~r~~lfV~~hgsw~~~~~~~~g~~~~~~~~fl~---~--d------~~gR~~dV~-v~~DGallv  382 (399)
T COG2133         315 APSGMAFYTGDLFPAYRGDLFVGAHGSWPVLRLRPDGNYKVVLTGFLS---G--D------LGGRPRDVA-VAPDGALLV  382 (399)
T ss_pred             ccceeEEecCCcCccccCcEEEEeecceeEEEeccCCCcceEEEEEEe---c--C------CCCcccceE-ECCCCeEEE
Confidence            4689999742       68999987777677777 5553333221100   0  0      013799998 899999999


Q ss_pred             EECC-CCeEEEEEcCC
Q 011333          216 IDRG-NRAIREIQLHF  230 (488)
Q Consensus       216 aD~g-N~rIrkI~~~g  230 (488)
                      +|-. +++|+|+...+
T Consensus       383 ~~D~~~g~i~Rv~~~~  398 (399)
T COG2133         383 LTDQGDGRILRVSYAG  398 (399)
T ss_pred             eecCCCCeEEEecCCC
Confidence            9876 77999998653

>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides

Probab=95.22  E-value=0.12  Score=43.61  Aligned_cols=29  Identities=14%  Similarity=0.418  Sum_probs=26.4

Q ss_pred             cCCcceEEEcCCC-cEEEEECCCCEEEEEc
Q 011333          142 MNHPKGLTVDDRG-NIYIADTMNMAIRKIS  170 (488)
Q Consensus       142 Ln~P~GIAvD~dG-~LYVAD~~N~rIrkid  170 (488)
                      |..|+||++++++ .||||+...+.|+.+.
T Consensus        53 ~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~   82 (86)
T PF01731_consen   53 FSFANGIAISPDKKYLYVASSLAHSIHVYK   82 (86)
T ss_pred             CCCCceEEEcCCCCEEEEEeccCCeEEEEE
Confidence            8889999999977 5999999999999886

The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=95.17  E-value=0.18  Score=53.31  Aligned_cols=99  Identities=14%  Similarity=0.179  Sum_probs=65.7

Q ss_pred             cEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCc-EEEEECCCCEEEEEc--C
Q 011333           95 ELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-IYIADTMNMAIRKIS--D  171 (488)
Q Consensus        95 ~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~-LYVAD~~N~rIrkid--~  171 (488)
                      -+||++.+.+.|..||..+..  .+..+...                ..-+.++++.+||+ +||+.. .+.|.+||  .
T Consensus         7 l~~V~~~~~~~v~viD~~t~~--~~~~i~~~----------------~~~h~~~~~s~Dgr~~yv~~r-dg~vsviD~~~   67 (369)
T PF02239_consen    7 LFYVVERGSGSVAVIDGATNK--VVARIPTG----------------GAPHAGLKFSPDGRYLYVANR-DGTVSVIDLAT   67 (369)
T ss_dssp             EEEEEEGGGTEEEEEETTT-S--EEEEEE-S----------------TTEEEEEE-TT-SSEEEEEET-TSEEEEEETTS
T ss_pred             EEEEEecCCCEEEEEECCCCe--EEEEEcCC----------------CCceeEEEecCCCCEEEEEcC-CCeEEEEECCc
Confidence            356889999999999987521  23333221                11145688899996 999986 57999999  3


Q ss_pred             CC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCC
Q 011333          172 SG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHF  230 (488)
Q Consensus       172 gg-VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g  230 (488)
                      +. +.++.-+.                  .|.++++..+...|||++...+.|..||...
T Consensus        68 ~~~v~~i~~G~------------------~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~t  109 (369)
T PF02239_consen   68 GKVVATIKVGG------------------NPRGIAVSPDGKYVYVANYEPGTVSVIDAET  109 (369)
T ss_dssp             SSEEEEEE-SS------------------EEEEEEE--TTTEEEEEEEETTEEEEEETTT
T ss_pred             ccEEEEEecCC------------------CcceEEEcCCCCEEEEEecCCCceeEecccc
Confidence            44 55554331                  5789995544557899999999999999765

...

>TIGR03032 conserved hypothetical protein TIGR03032

Probab=95.07  E-value=1.4  Score=45.72  Aligned_cols=183  Identities=17%  Similarity=0.188  Sum_probs=98.6

Q ss_pred             ceeccceeEEeeecCcceEEeCCCcccccCCceeEEeecCCCCCCCceEEEEccCCcEEEEECCCCeEEEEeCCCCcccc
Q 011333           39 GVSVLMKWLWSLKTTTKTAITGRPMMKFESGYTVETVFDGSKLGIEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSR  118 (488)
Q Consensus        39 ~a~~~~~~i~~~~~~t~~~iaG~~~~~~~dG~~~~~~~~G~~~l~~P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~  118 (488)
                      .+.+...+||.+........++.....++.=|......-.  ....-+.|++ .++.+++.++.-+++-.+++..++.-.
T Consensus        61 l~~~t~~qiw~f~~~~n~l~~~~~~~~~D~~yvPr~~~~T--GdidiHdia~-~~~~l~fVNT~fSCLatl~~~~SF~P~  137 (335)
T TIGR03032        61 LTLGTRYQLWRFANVDNLLPAGQTHPGYDRLYVPRASYVT--GDIDAHDLAL-GAGRLLFVNTLFSCLATVSPDYSFVPL  137 (335)
T ss_pred             EEEEEcceeEEcccccccccccccCCCCCeEEeeeeeeec--cCcchhheee-cCCcEEEEECcceeEEEECCCCccccc
Confidence            4456668889873333322222211112211222222111  1235678888 678999999999999999988654211


Q ss_pred             cEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEECCCC------EEEEEcCCC-cEEEeCCccCCCCCCCCC
Q 011333          119 PKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNM------AIRKISDSG-VTTIAGGKWGRGGGHVDG  191 (488)
Q Consensus       119 i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~N~------rIrkid~gg-VttIaGg~~g~~~g~~dG  191 (488)
                      ..     +...+..    +.+- =.+-+|+|++...--||+--+..      |=.+. +|+ +.-|..+.          
T Consensus       138 Wk-----PpFIs~l----a~eD-RCHLNGlA~~~g~p~yVTa~~~sD~~~gWR~~~~-~gG~vidv~s~e----------  196 (335)
T TIGR03032       138 WK-----PPFISKL----APED-RCHLNGMALDDGEPRYVTALSQSDVADGWREGRR-DGGCVIDIPSGE----------  196 (335)
T ss_pred             cC-----Ccccccc----CccC-ceeecceeeeCCeEEEEEEeeccCCccccccccc-CCeEEEEeCCCC----------
Confidence            11     0011110    0000 24668999974334777542210      11111 233 22222111          


Q ss_pred             CcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcC-CCceEEeccCCCcceEEEE
Q 011333          192 PSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLH-FDDCAYQYGSSFPLGIAVL  248 (488)
Q Consensus       192 ~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~-g~~~~~~~~~g~P~GIav~  248 (488)
                       ....-|..|.+--+  -+|+|||+|++.+.|.+++++ |.......-.++|.|++..
T Consensus       197 -vl~~GLsmPhSPRW--hdgrLwvldsgtGev~~vD~~~G~~e~Va~vpG~~rGL~f~  251 (335)
T TIGR03032       197 -VVASGLSMPHSPRW--YQGKLWLLNSGRGELGYVDPQAGKFQPVAFLPGFTRGLAFA  251 (335)
T ss_pred             -EEEcCccCCcCCcE--eCCeEEEEECCCCEEEEEcCCCCcEEEEEECCCCCccccee
Confidence             01112556666665  358999999999999999997 6655555666788888887

This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.

>COG3211 PhoX Predicted phosphatase [General function prediction only]

Probab=94.86  E-value=0.26  Score=54.32  Aligned_cols=83  Identities=19%  Similarity=0.229  Sum_probs=52.0

Q ss_pred             CCCCceEEEEcc-CCcEEEEECCCC----------------eEEEEeCCCC----cccccEEEe--cCCCCccccCCCcc
Q 011333           81 LGIEPYSVEVLP-GGELLILDSANS----------------NLYRISSSLS----LYSRPKLVA--GSAEGYSGHVDGKP  137 (488)
Q Consensus        81 ~l~~P~GIaVd~-dG~LYVaD~~n~----------------rI~kid~~g~----~~g~i~tva--G~~~G~~G~~dG~a  137 (488)
                      .+..|.+|++.+ .|++|++.+.|.                +|+|+-+.+.    ...++.+++  |.+.-..+.....-
T Consensus       415 ~mdRpE~i~~~p~~g~Vy~~lTNn~~r~~~~aNpr~~n~~G~I~r~~p~~~d~t~~~ftWdlF~~aG~~~~~~~~~~~~~  494 (616)
T COG3211         415 PMDRPEWIAVNPGTGEVYFTLTNNGKRSDDAANPRAKNGYGQIVRWIPATGDHTDTKFTWDLFVEAGNPSVLEGGASANI  494 (616)
T ss_pred             cccCccceeecCCcceEEEEeCCCCccccccCCCcccccccceEEEecCCCCccCccceeeeeeecCCccccccccccCc
Confidence            367999999998 678999987654                6888877642    111333333  33211111000001


Q ss_pred             cccccCCcceEEEcCCCcEEEEECCC
Q 011333          138 REARMNHPKGLTVDDRGNIYIADTMN  163 (488)
Q Consensus       138 ~~a~Ln~P~GIAvD~dG~LYVAD~~N  163 (488)
                      ...-|+.|-+|+||+.|+|||+.-++
T Consensus       495 ~~~~f~~PDnl~fD~~GrLWi~TDg~  520 (616)
T COG3211         495 NANWFNSPDNLAFDPWGRLWIQTDGS  520 (616)
T ss_pred             ccccccCCCceEECCCCCEEEEecCC
Confidence            11458999999999999999986443

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=94.79  E-value=0.58  Score=49.30  Aligned_cols=66  Identities=11%  Similarity=0.133  Sum_probs=46.4

Q ss_pred             EEEcCCC-cEEEE-EC--------CCCEEEEEcC--CC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCC-eE
Q 011333          148 LTVDDRG-NIYIA-DT--------MNMAIRKISD--SG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSC-SL  213 (488)
Q Consensus       148 IAvD~dG-~LYVA-D~--------~N~rIrkid~--gg-VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G-~L  213 (488)
                      |+++++| .+||+ ..        ..+.|..||.  +. +..|.-+                  ..|++|++..+.. .|
T Consensus       253 ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG------------------~~~~~iavS~Dgkp~l  314 (352)
T TIGR02658       253 VAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELG------------------HEIDSINVSQDAKPLL  314 (352)
T ss_pred             EEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCC------------------CceeeEEECCCCCeEE
Confidence            9999876 69994 32        2368999993  33 3444432                  2688999544445 68


Q ss_pred             EEEECCCCeEEEEEcCCC
Q 011333          214 LVIDRGNRAIREIQLHFD  231 (488)
Q Consensus       214 YVaD~gN~rIrkI~~~g~  231 (488)
                      |+++..++.|..||....
T Consensus       315 yvtn~~s~~VsViD~~t~  332 (352)
T TIGR02658       315 YALSTGDKTLYIFDAETG  332 (352)
T ss_pred             EEeCCCCCcEEEEECcCC
Confidence            999988999999997653

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells

Probab=94.73  E-value=0.1  Score=37.81  Aligned_cols=41  Identities=24%  Similarity=0.395  Sum_probs=32.6

Q ss_pred             CcEEEEECCCC-eEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcC
Q 011333           94 GELLILDSANS-NLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDD  152 (488)
Q Consensus        94 G~LYVaD~~n~-rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~  152 (488)
                      |.||-+|...+ .|.+.+.+|+   ...+++..               .+..|.|||||.
T Consensus         1 ~~iYWtD~~~~~~I~~a~~dGs---~~~~vi~~---------------~l~~P~giaVD~   42 (42)
T PF00058_consen    1 GKIYWTDWSQDPSIERANLDGS---NRRTVISD---------------DLQHPEGIAVDW   42 (42)
T ss_dssp             TEEEEEETTTTEEEEEEETTST---SEEEEEES---------------STSSEEEEEEET
T ss_pred             CEEEEEECCCCcEEEEEECCCC---CeEEEEEC---------------CCCCcCEEEECC
Confidence            57999999999 9999999974   34555443               188999999984

The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=94.60  E-value=0.12  Score=52.73  Aligned_cols=64  Identities=16%  Similarity=0.322  Sum_probs=47.9

Q ss_pred             CceEEEEccCCcEEEEECCCCeEEEEeCCCCcc-cccEEEecCCCCccccCCCcccccccCCcceEEEcC--CCcEEEEE
Q 011333           84 EPYSVEVLPGGELLILDSANSNLYRISSSLSLY-SRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDD--RGNIYIAD  160 (488)
Q Consensus        84 ~P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~-g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~--dG~LYVAD  160 (488)
                      .-.|+++|++|.||+++...+.|.++++.+... ....+++-..             ..|..|.+++++.  +|.|||.-
T Consensus       187 ~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~-------------~~l~~pd~~~i~~~~~g~L~v~s  253 (287)
T PF03022_consen  187 QSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDP-------------RTLQWPDGLKIDPEGDGYLWVLS  253 (287)
T ss_dssp             SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-C-------------C-GSSEEEEEE-T--TS-EEEEE
T ss_pred             CCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcC-------------ceeeccceeeeccccCceEEEEE
Confidence            457999999999999999999999999985321 1345554321             2389999999999  99999976

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=94.48  E-value=2.8  Score=44.67  Aligned_cols=110  Identities=16%  Similarity=0.179  Sum_probs=63.1

Q ss_pred             ccCCcceEEEc---CCCcEEE--EECCCCEEEEEc-----CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCC
Q 011333          141 RMNHPKGLTVD---DRGNIYI--ADTMNMAIRKIS-----DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSS  210 (488)
Q Consensus       141 ~Ln~P~GIAvD---~dG~LYV--AD~~N~rIrkid-----~ggVttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~  210 (488)
                      .+..|.|+|+-   .+|.+|+  .+. ++++..+.     ++.+....-....             .-..+-++++.|..
T Consensus       154 ~~~e~yGlcly~~~~~g~~ya~v~~k-~G~~~Qy~L~~~~~g~v~~~lVR~f~-------------~~sQ~EGCVVDDe~  219 (381)
T PF02333_consen  154 DLSEPYGLCLYRSPSTGALYAFVNGK-DGRVEQYELTDDGDGKVSATLVREFK-------------VGSQPEGCVVDDET  219 (381)
T ss_dssp             SSSSEEEEEEEE-TTT--EEEEEEET-TSEEEEEEEEE-TTSSEEEEEEEEEE--------------SS-EEEEEEETTT
T ss_pred             ccccceeeEEeecCCCCcEEEEEecC-CceEEEEEEEeCCCCcEeeEEEEEec-------------CCCcceEEEEeccc
Confidence            36778999984   2566554  443 46665543     2323211100000             01357788878889


Q ss_pred             CeEEEEECCCCeEEEEEcCCCce---EE---eccC---CCcceEEEEecCCceEEEEEEEEecc
Q 011333          211 CSLLVIDRGNRAIREIQLHFDDC---AY---QYGS---SFPLGIAVLLAAGFFGYMLALLQRRV  265 (488)
Q Consensus       211 G~LYVaD~gN~rIrkI~~~g~~~---~~---~~~~---g~P~GIav~~g~g~~Gy~~a~l~~~~  265 (488)
                      +.|||++- +.-||++..+.+..   ..   ..+.   .-..||++.-+...-||++++-|+.-
T Consensus       220 g~LYvgEE-~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~  282 (381)
T PF02333_consen  220 GRLYVGEE-DVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDN  282 (381)
T ss_dssp             TEEEEEET-TTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGT
T ss_pred             CCEEEecC-ccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCC
Confidence            99999996 57999999874322   11   1121   24568999877667899999888653

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]

Probab=94.36  E-value=2.6  Score=45.17  Aligned_cols=160  Identities=21%  Similarity=0.237  Sum_probs=85.6

Q ss_pred             CCCceEEEEccCCcEEEEECCCCeEEEEeCCCCcc----cccEEEecCCCCccccCCCc---ccccccCCcceEEEcCCC
Q 011333           82 GIEPYSVEVLPGGELLILDSANSNLYRISSSLSLY----SRPKLVAGSAEGYSGHVDGK---PREARMNHPKGLTVDDRG  154 (488)
Q Consensus        82 l~~P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~----g~i~tvaG~~~G~~G~~dG~---a~~a~Ln~P~GIAvD~dG  154 (488)
                      +.+|++++..|+|.+.|+....++++.+.......    +...++..   +..|..+..   --...++.|.+++.- .+
T Consensus        66 Le~p~~~~~lP~G~~~v~er~~G~l~~i~~g~~~~~~~~~~~~~~~~---~~~Gll~~al~~~fa~~~~~~~~~a~~-~~  141 (399)
T COG2133          66 LEHPWGLARLPDGVLLVTERPTGRLRLISDGGSASPPVSTVPIVLLR---GQGGLLDIALSPDFAQGRLVYFGISEP-GG  141 (399)
T ss_pred             ccCchhheecCCceEEEEccCCccEEEecCCCcccccccccceEEec---cCCCccceEecccccccceeeeEEEee-cC
Confidence            56999999999997777777667888776443210    11111111   111211110   011236789999985 66


Q ss_pred             cEEEEECCCCEEEEEcCC--Cc---EEEe-CCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCC--------
Q 011333          155 NIYIADTMNMAIRKISDS--GV---TTIA-GGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGN--------  220 (488)
Q Consensus       155 ~LYVAD~~N~rIrkid~g--gV---ttIa-Gg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN--------  220 (488)
                      .+|++.+  ..+-+++.+  ++   .+|. ..+.            .. ..+=..|+ ++++|.|||+=-.+        
T Consensus       142 ~~~~~n~--~~~~~~~~g~~~l~~~~~i~~~lP~------------~~-~H~g~~l~-f~pDG~Lyvs~G~~~~~~~aq~  205 (399)
T COG2133         142 GLYVANR--VAIGRLPGGDTKLSEPKVIFRGIPK------------GG-HHFGGRLV-FGPDGKLYVTTGSNGDPALAQD  205 (399)
T ss_pred             CceEEEE--EEEEEcCCCccccccccEEeecCCC------------CC-CcCcccEE-ECCCCcEEEEeCCCCCcccccC
Confidence            7888874  455666622  22   1222 1111            11 22334577 78999999985443        


Q ss_pred             -----CeEEEEEcCCC---------ceEEeccCCCcceEEEEecCCceEEEEEEEEec
Q 011333          221 -----RAIREIQLHFD---------DCAYQYGSSFPLGIAVLLAAGFFGYMLALLQRR  264 (488)
Q Consensus       221 -----~rIrkI~~~g~---------~~~~~~~~g~P~GIav~~g~g~~Gy~~a~l~~~  264 (488)
                           +.|.+++..+.         ...+..+..-|.|++....   -|-+++.-+.+
T Consensus       206 ~~~~~Gk~~r~~~a~~~~~d~p~~~~~i~s~G~RN~qGl~w~P~---tg~Lw~~e~g~  260 (399)
T COG2133         206 NVSLAGKVLRIDRAGIIPADNPFPNSEIWSYGHRNPQGLAWHPV---TGALWTTEHGP  260 (399)
T ss_pred             ccccccceeeeccCcccccCCCCCCcceEEeccCCccceeecCC---CCcEEEEecCC
Confidence                 34455554431         1123445556777777642   24455555555

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.30  E-value=0.13  Score=52.59  Aligned_cols=67  Identities=24%  Similarity=0.408  Sum_probs=45.8

Q ss_pred             ceEEEEcc-CCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEEC
Q 011333           85 PYSVEVLP-GGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADT  161 (488)
Q Consensus        85 P~GIaVd~-dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~  161 (488)
                      -.|+.+++ .|.|+|.....++++.++..|...+.++...    |..|-      ....-+|.|||.|++|+|||+--
T Consensus       235 vSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL~~----g~~gL------~~dipqaEGiamDd~g~lYIvSE  302 (316)
T COG3204         235 VSGLEFNAITNSLLVLSDESRRLLEVDLSGEVIELLSLTK----GNHGL------SSDIPQAEGIAMDDDGNLYIVSE  302 (316)
T ss_pred             cccceecCCCCcEEEEecCCceEEEEecCCCeeeeEEecc----CCCCC------cccCCCcceeEECCCCCEEEEec
Confidence            34555664 6778888888899999999864333333332    33332      22367899999999999999864

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=94.26  E-value=2.5  Score=43.84  Aligned_cols=137  Identities=9%  Similarity=0.033  Sum_probs=72.2

Q ss_pred             CCCCCceEEEEccCCcEEEEECCCCeEEEEeCC-----CCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCC
Q 011333           80 KLGIEPYSVEVLPGGELLILDSANSNLYRISSS-----LSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRG  154 (488)
Q Consensus        80 ~~l~~P~GIaVd~dG~LYVaD~~n~rI~kid~~-----g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG  154 (488)
                      ..+.+|+||++.|.|-+||+|.+++....++.+     +.....+.++-+. .+.          ..-..|+||.+....
T Consensus        20 p~L~N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~-~~~----------~~~~~PTGiVfN~~~   88 (336)
T TIGR03118        20 PGLRNAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAP-PPL----------AAEGTPTGQVFNGSD   88 (336)
T ss_pred             ccccccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCC-CCC----------CCCCCccEEEEeCCC
Confidence            346799999999999999999999998888876     2110111111111 011          112348999887544


Q ss_pred             cEEEEECCCC---E-EEEEcCCCcEEEeCCccCC----CC-CCCCCCcccccCCCCCeeEEECC--CCeEEEEECCCCeE
Q 011333          155 NIYIADTMNM---A-IRKISDSGVTTIAGGKWGR----GG-GHVDGPSEDAKFSNDFDVVYIGS--SCSLLVIDRGNRAI  223 (488)
Q Consensus       155 ~LYVAD~~N~---r-Irkid~ggVttIaGg~~g~----~~-g~~dG~~~~a~f~~P~gIa~vd~--~G~LYVaD~gN~rI  223 (488)
                      ..-|+.....   + |..-++|.|+-+...-...    .. -.+++. ..+-+   .|+|+...  .+.||.+|..+++|
T Consensus        89 ~F~vt~~g~~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~-~gavY---kGLAi~~~~~~~~LYaadF~~g~I  164 (336)
T TIGR03118        89 TFVVSGEGITGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQ-QGNVY---KGLAVGPTGGGDYLYAANFRQGRI  164 (336)
T ss_pred             ceEEcCCCcccceeEEEEeCCceEEeecCcCCcccccccEEEEccCC-Cccee---eeeEEeecCCCceEEEeccCCCce
Confidence            4333331111   1 1111244455444210000    00 000000 00111   45664322  46899999999999


Q ss_pred             EEEEcCCC
Q 011333          224 REIQLHFD  231 (488)
Q Consensus       224 rkI~~~g~  231 (488)
                      .+++....
T Consensus       165 DVFd~~f~  172 (336)
T TIGR03118       165 DVFKGSFR  172 (336)
T ss_pred             EEecCccc
Confidence            99986654

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=94.11  E-value=1  Score=48.71  Aligned_cols=113  Identities=17%  Similarity=0.163  Sum_probs=79.5

Q ss_pred             ceEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEECCCC
Q 011333           85 PYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNM  164 (488)
Q Consensus        85 P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~N~  164 (488)
                      -.++++.++|.+.++-.....|+.++..... ..+.++.|.                -+.-+.+++.++|+++++=...+
T Consensus       206 v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~-~~~~~l~gH----------------~~~v~~~~f~p~g~~i~Sgs~D~  268 (456)
T KOG0266|consen  206 VSDVAFSPDGSYLLSGSDDKTLRIWDLKDDG-RNLKTLKGH----------------STYVTSVAFSPDGNLLVSGSDDG  268 (456)
T ss_pred             eeeeEECCCCcEEEEecCCceEEEeeccCCC-eEEEEecCC----------------CCceEEEEecCCCCEEEEecCCC
Confidence            3678889999988888888899999883110 234555554                23357899999999999888888


Q ss_pred             EEEEEc-CC-C-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCc
Q 011333          165 AIRKIS-DS-G-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDD  232 (488)
Q Consensus       165 rIrkid-~g-g-VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g~~  232 (488)
                      .||..+ .+ . +.++.+...                 .-.+++ +..+++++++-...+.|+.++.....
T Consensus       269 tvriWd~~~~~~~~~l~~hs~-----------------~is~~~-f~~d~~~l~s~s~d~~i~vwd~~~~~  321 (456)
T KOG0266|consen  269 TVRIWDVRTGECVRKLKGHSD-----------------GISGLA-FSPDGNLLVSASYDGTIRVWDLETGS  321 (456)
T ss_pred             cEEEEeccCCeEEEeeeccCC-----------------ceEEEE-ECCCCCEEEEcCCCccEEEEECCCCc
Confidence            999888 33 3 445544321                 124566 67777777777778888888888765

>smart00135 LY Low-density lipoprotein-receptor YWTD domain

Probab=93.91  E-value=0.12  Score=36.06  Aligned_cols=29  Identities=31%  Similarity=0.378  Sum_probs=26.1

Q ss_pred             cCCcceEEEcCCC-cEEEEECCCCEEEEEc
Q 011333          142 MNHPKGLTVDDRG-NIYIADTMNMAIRKIS  170 (488)
Q Consensus       142 Ln~P~GIAvD~dG-~LYVAD~~N~rIrkid  170 (488)
                      +..|+|||+|+.+ .||.+|...+.|.+.+
T Consensus         8 ~~~~~~la~d~~~~~lYw~D~~~~~I~~~~   37 (43)
T smart00135        8 LGHPNGLAVDWIEGRLYWTDWGLDVIEVAN   37 (43)
T ss_pred             CCCcCEEEEeecCCEEEEEeCCCCEEEEEe
Confidence            7889999999965 6999999999999887

Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.02  E-value=12  Score=38.56  Aligned_cols=148  Identities=20%  Similarity=0.244  Sum_probs=82.1

Q ss_pred             CCCceEEEEccCCcEEEEECCCCeEEEEeCCCCc----ccccEEEecCCC-CccccCCCcccccccCCcceEEEcCCC-c
Q 011333           82 GIEPYSVEVLPGGELLILDSANSNLYRISSSLSL----YSRPKLVAGSAE-GYSGHVDGKPREARMNHPKGLTVDDRG-N  155 (488)
Q Consensus        82 l~~P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~----~g~i~tvaG~~~-G~~G~~dG~a~~a~Ln~P~GIAvD~dG-~  155 (488)
                      +..|.+|+.-.+|...++|--..+++++..+-..    ......-.|... ..+|             =.|+|.|+.. .
T Consensus       128 ~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~G-------------fEGlA~d~~~~~  194 (316)
T COG3204         128 FSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKG-------------FEGLAWDPVDHR  194 (316)
T ss_pred             cCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcC-------------ceeeecCCCCce
Confidence            5589999988888888889888888888765321    000111122210 1122             2589999854 6


Q ss_pred             EEEEECCC-CEEEEEcC--CCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCc
Q 011333          156 IYIADTMN-MAIRKISD--SGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDD  232 (488)
Q Consensus       156 LYVAD~~N-~rIrkid~--ggVttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g~~  232 (488)
                      +||+--.| -+|.+++.  ..++.-+.....        .....-+..-.++.+-...++|+|---..++|.+++..|+.
T Consensus       195 l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~--------~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~  266 (316)
T COG3204         195 LFVAKERNPIGIFEVTQSPSSLSVHASLDPT--------ADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEV  266 (316)
T ss_pred             EEEEEccCCcEEEEEecCCcccccccccCcc--------cccceEeeccccceecCCCCcEEEEecCCceEEEEecCCCe
Confidence            88886433 45665551  112111111000        00011123345666544567788777777888888888764


Q ss_pred             eEE----------eccCCCcceEEEEec
Q 011333          233 CAY----------QYGSSFPLGIAVLLA  250 (488)
Q Consensus       233 ~~~----------~~~~g~P~GIav~~g  250 (488)
                      ...          ...-..+.||++|..
T Consensus       267 ~~~lsL~~g~~gL~~dipqaEGiamDd~  294 (316)
T COG3204         267 IELLSLTKGNHGLSSDIPQAEGIAMDDD  294 (316)
T ss_pred             eeeEEeccCCCCCcccCCCcceeEECCC
Confidence            322          122236789999966

>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides

Probab=92.88  E-value=0.98  Score=38.13  Aligned_cols=33  Identities=18%  Similarity=0.060  Sum_probs=27.9

Q ss_pred             CCCCCeeEEECCCCeEEEEECCCCeEEEEEcCC
Q 011333          198 FSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHF  230 (488)
Q Consensus       198 f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g  230 (488)
                      |..|+||++.++...|||++...+.|+.+..+.
T Consensus        53 ~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~~   85 (86)
T PF01731_consen   53 FSFANGIAISPDKKYLYVASSLAHSIHVYKRHK   85 (86)
T ss_pred             CCCCceEEEcCCCCEEEEEeccCCeEEEEEecC
Confidence            778999996556778999999999999987653

The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity

>smart00135 LY Low-density lipoprotein-receptor YWTD domain

Probab=92.72  E-value=0.33  Score=33.83  Aligned_cols=35  Identities=14%  Similarity=-0.027  Sum_probs=30.4

Q ss_pred             cCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCC
Q 011333          197 KFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFD  231 (488)
Q Consensus       197 ~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g~  231 (488)
                      .+..|.++|+....+.||.+|...+.|.+.+.+|.
T Consensus         7 ~~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g~   41 (43)
T smart00135        7 GLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGT   41 (43)
T ss_pred             CCCCcCEEEEeecCCEEEEEeCCCCEEEEEeCCCC
Confidence            46789999977777899999999999999998874

Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=92.62  E-value=2.1  Score=43.37  Aligned_cols=111  Identities=13%  Similarity=0.113  Sum_probs=70.1

Q ss_pred             CceEEEEccCCcEEEEEC--CCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEEC
Q 011333           84 EPYSVEVLPGGELLILDS--ANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADT  161 (488)
Q Consensus        84 ~P~GIaVd~dG~LYVaD~--~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~  161 (488)
                      .-+|+.+..+|.||.+..  +.++|++++.+++   ++....--....              --.||++- ++.||.--+
T Consensus        46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg---~~~~~~~l~~~~--------------FgEGit~~-~d~l~qLTW  107 (264)
T PF05096_consen   46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETG---KVLQSVPLPPRY--------------FGEGITIL-GDKLYQLTW  107 (264)
T ss_dssp             EEEEEEEEETTEEEEEECSTTEEEEEEEETTTS---SEEEEEE-TTT----------------EEEEEEE-TTEEEEEES
T ss_pred             cCccEEecCCCEEEEeCCCCCcEEEEEEECCCC---cEEEEEECCccc--------------cceeEEEE-CCEEEEEEe
Confidence            457888878899999975  4468999999873   322221111011              13578887 568999999


Q ss_pred             CCCEEEEEcCCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCC
Q 011333          162 MNMAIRKISDSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHF  230 (488)
Q Consensus       162 ~N~rIrkid~ggVttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g  230 (488)
                      .++...++|......+..-..               -..-+||+ .| ...||++| |+.+|+.+++..
T Consensus       108 k~~~~f~yd~~tl~~~~~~~y---------------~~EGWGLt-~d-g~~Li~SD-GS~~L~~~dP~~  158 (264)
T PF05096_consen  108 KEGTGFVYDPNTLKKIGTFPY---------------PGEGWGLT-SD-GKRLIMSD-GSSRLYFLDPET  158 (264)
T ss_dssp             SSSEEEEEETTTTEEEEEEE----------------SSS--EEE-EC-SSCEEEE--SSSEEEEE-TTT
T ss_pred             cCCeEEEEccccceEEEEEec---------------CCcceEEE-cC-CCEEEEEC-CccceEEECCcc
Confidence            999999999655433321100               01348888 34 45788888 478999988763

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function

Probab=92.47  E-value=1.2  Score=49.32  Aligned_cols=79  Identities=23%  Similarity=0.416  Sum_probs=51.4

Q ss_pred             cccCCcceEEEcC-CCcEEEEECCCC-------------------EEEEEc-CCC--------cEEE-eCCccCCCCCCC
Q 011333          140 ARMNHPKGLTVDD-RGNIYIADTMNM-------------------AIRKIS-DSG--------VTTI-AGGKWGRGGGHV  189 (488)
Q Consensus       140 a~Ln~P~GIAvD~-dG~LYVAD~~N~-------------------rIrkid-~gg--------VttI-aGg~~g~~~g~~  189 (488)
                      +.|..|.||++++ +|.|||+-+.|.                   +|.++. .+.        ..++ .++.........
T Consensus       347 T~f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~~~~~~~  426 (524)
T PF05787_consen  347 TPFDRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAATTFTWELFLVGGDPTDASGNG  426 (524)
T ss_pred             ccccCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCccccceeEEEEEEEecCcccccccc
Confidence            4699999999998 579999988766                   788887 221        1222 222111000111


Q ss_pred             CCCcccccCCCCCeeEEECCCCeEEEEECC
Q 011333          190 DGPSEDAKFSNDFDVVYIGSSCSLLVIDRG  219 (488)
Q Consensus       190 dG~~~~a~f~~P~gIa~vd~~G~LYVaD~g  219 (488)
                      ........|++|-.|+ ++++|+|||+.-+
T Consensus       427 ~~~~~~~~f~sPDNL~-~d~~G~LwI~eD~  455 (524)
T PF05787_consen  427 SNKCDDNGFASPDNLA-FDPDGNLWIQEDG  455 (524)
T ss_pred             cCcccCCCcCCCCceE-ECCCCCEEEEeCC
Confidence            2233456799999999 7889999888643

>PRK02888 nitrous-oxide reductase; Validated

Probab=92.33  E-value=1.6  Score=49.17  Aligned_cols=82  Identities=9%  Similarity=0.112  Sum_probs=55.3

Q ss_pred             CCcceEEEcCCCc-EEEEECCCCEEEEEcCCCcE-EEeCCccCCCCCCCCCCcccccC-CCCCeeEEECCCCeEEEEECC
Q 011333          143 NHPKGLTVDDRGN-IYIADTMNMAIRKISDSGVT-TIAGGKWGRGGGHVDGPSEDAKF-SNDFDVVYIGSSCSLLVIDRG  219 (488)
Q Consensus       143 n~P~GIAvD~dG~-LYVAD~~N~rIrkid~ggVt-tIaGg~~g~~~g~~dG~~~~a~f-~~P~gIa~vd~~G~LYVaD~g  219 (488)
                      +.|+||++++||. +||+......|.+||-..+. .+++.     ....+-...+..+ ..|...+ +|.+|+.|++=.-
T Consensus       321 KsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~-----~~~~~~vvaevevGlGPLHTa-FDg~G~aytslf~  394 (635)
T PRK02888        321 KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGK-----IKPRDAVVAEPELGLGPLHTA-FDGRGNAYTTLFL  394 (635)
T ss_pred             CCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhcc-----CCccceEEEeeccCCCcceEE-ECCCCCEEEeEee
Confidence            7899999999996 88888888999999933321 11111     0000100011111 3689999 6889999998888


Q ss_pred             CCeEEEEEcCC
Q 011333          220 NRAIREIQLHF  230 (488)
Q Consensus       220 N~rIrkI~~~g  230 (488)
                      ...|-++++..
T Consensus       395 dsqv~kwn~~~  405 (635)
T PRK02888        395 DSQIVKWNIEA  405 (635)
T ss_pred             cceeEEEehHH
Confidence            88999998764

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=92.28  E-value=3.9  Score=42.23  Aligned_cols=31  Identities=29%  Similarity=0.574  Sum_probs=27.9

Q ss_pred             CcceEEEcCCCcEEEEECCC------CEEEEEc-CCCc
Q 011333          144 HPKGLTVDDRGNIYIADTMN------MAIRKIS-DSGV  174 (488)
Q Consensus       144 ~P~GIAvD~dG~LYVAD~~N------~rIrkid-~ggV  174 (488)
                      .+.||+++++|.+||++-+.      ++|++++ +|.+
T Consensus        86 D~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~G~~  123 (326)
T PF13449_consen   86 DPEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLDGRV  123 (326)
T ss_pred             ChhHeEEecCCCEEEEeCCccCCCCCCEEEEECCCCcc
Confidence            78899998899999999999      9999999 6554

>KOG1215 consensus Low-density lipoprotein receptors containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]

Probab=91.99  E-value=1.6  Score=51.17  Aligned_cols=135  Identities=16%  Similarity=0.135  Sum_probs=97.8

Q ss_pred             CCCceEEEEcc-CCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcC-CCcEEEE
Q 011333           82 GIEPYSVEVLP-GGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDD-RGNIYIA  159 (488)
Q Consensus        82 l~~P~GIaVd~-dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~-dG~LYVA  159 (488)
                      ...|.++++|- .+++|.+|..+..|.+.+.++.   ...+++..               .+..|..+++++ .|-+|.+
T Consensus       479 ~~~~~~lavD~~~~~~y~tDe~~~~i~v~~~~g~---~~~vl~~~---------------~l~~~r~~~v~p~~g~~~wt  540 (877)
T KOG1215|consen  479 LCIPEGLAVDWIGDNIYWTDEGNCLIEVADLDGS---SRKVLVSK---------------DLDLPRSIAVDPEKGLMFWT  540 (877)
T ss_pred             ccccCcEEEEeccCCceecccCCceeEEEEccCC---ceeEEEec---------------CCCCccceeeccccCeeEEe
Confidence            34789999987 6779999999999999987753   23344443               146799999999 7789999


Q ss_pred             ECC-CCEEEEEc-CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCC-eEEEEEcCCCceE-
Q 011333          160 DTM-NMAIRKIS-DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNR-AIREIQLHFDDCA-  234 (488)
Q Consensus       160 D~~-N~rIrkid-~gg-VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~-rIrkI~~~g~~~~-  234 (488)
                      |.+ ..+|.+-. ++. ..++...                .+..|+++++.-.+..+|-+|.... .|.++..+|.... 
T Consensus       541 d~~~~~~i~ra~~dg~~~~~l~~~----------------~~~~p~glt~d~~~~~~yw~d~~~~~~i~~~~~~g~~r~~  604 (877)
T KOG1215|consen  541 DWGQPPRIERASLDGSERAVLVTN----------------GILWPNGLTIDYETDRLYWADAKLDYTIESANMDGQNRRV  604 (877)
T ss_pred             cCCCCchhhhhcCCCCCceEEEeC----------------CccCCCcceEEeecceeEEEcccCCcceeeeecCCCceEE
Confidence            987 44666655 333 3333321                1458999996666889999999888 7999999886553 


Q ss_pred             -EeccCCCcceEEEEec
Q 011333          235 -YQYGSSFPLGIAVLLA  250 (488)
Q Consensus       235 -~~~~~g~P~GIav~~g  250 (488)
                       .......|.++++-..
T Consensus       605 ~~~~~~~~p~~~~~~~~  621 (877)
T KOG1215|consen  605 VDSEDLPHPFGLSVFED  621 (877)
T ss_pred             eccccCCCceEEEEecc
Confidence             3344567888887644

>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells

Probab=91.56  E-value=0.74  Score=33.34  Aligned_cols=38  Identities=21%  Similarity=0.154  Sum_probs=32.2

Q ss_pred             CeEEEEECCCC-eEEEEEcCCCceEE--eccCCCcceEEEE
Q 011333          211 CSLLVIDRGNR-AIREIQLHFDDCAY--QYGSSFPLGIAVL  248 (488)
Q Consensus       211 G~LYVaD~gN~-rIrkI~~~g~~~~~--~~~~g~P~GIav~  248 (488)
                      ++||.+|.+.+ .|.+..++|.....  ......|.||||+
T Consensus         1 ~~iYWtD~~~~~~I~~a~~dGs~~~~vi~~~l~~P~giaVD   41 (42)
T PF00058_consen    1 GKIYWTDWSQDPSIERANLDGSNRRTVISDDLQHPEGIAVD   41 (42)
T ss_dssp             TEEEEEETTTTEEEEEEETTSTSEEEEEESSTSSEEEEEEE
T ss_pred             CEEEEEECCCCcEEEEEECCCCCeEEEEECCCCCcCEEEEC
Confidence            58999999999 99999999976543  4567789999997

The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....

>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)

Probab=91.47  E-value=4.7  Score=41.49  Aligned_cols=132  Identities=17%  Similarity=0.130  Sum_probs=80.0

Q ss_pred             CCceEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEc----CCCcEEE
Q 011333           83 IEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVD----DRGNIYI  158 (488)
Q Consensus        83 ~~P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD----~dG~LYV  158 (488)
                      .+...|..+.+|+++|+-...+.|++|++.+   |.+....|...+  ++  =......|..-.+..+-    .++.|-|
T Consensus       144 ~HiNsV~~~~~G~yLiS~R~~~~i~~I~~~t---G~I~W~lgG~~~--~d--f~~~~~~f~~QHdar~~~~~~~~~~Isl  216 (299)
T PF14269_consen  144 FHINSVDKDDDGDYLISSRNTSTIYKIDPST---GKIIWRLGGKRN--SD--FTLPATNFSWQHDARFLNESNDDGTISL  216 (299)
T ss_pred             cEeeeeeecCCccEEEEecccCEEEEEECCC---CcEEEEeCCCCC--Cc--ccccCCcEeeccCCEEeccCCCCCEEEE
Confidence            3566778888999999999999999999776   567777765311  11  00123446555555555    5677777


Q ss_pred             EEC----------CCCEEEEEc-CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEE
Q 011333          159 ADT----------MNMAIRKIS-DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREI  226 (488)
Q Consensus       159 AD~----------~N~rIrkid-~gg-VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI  226 (488)
                      -|-          ...+|..++ ... ++.+.... .    ..++.  .+..  .-++- .-++|+++|....++++..+
T Consensus       217 FDN~~~~~~~~~~s~~~v~~ld~~~~~~~~~~~~~-~----~~~~~--~s~~--~G~~Q-~L~nGn~li~~g~~g~~~E~  286 (299)
T PF14269_consen  217 FDNANSDFNGTEPSRGLVLELDPETMTVTLVREYS-D----HPDGF--YSPS--QGSAQ-RLPNGNVLIGWGNNGRISEF  286 (299)
T ss_pred             EcCCCCCCCCCcCCCceEEEEECCCCEEEEEEEee-c----CCCcc--cccC--CCcce-ECCCCCEEEecCCCceEEEE
Confidence            775          235677777 322 33322111 0    00010  0000  01122 23569999999999999999


Q ss_pred             EcCCC
Q 011333          227 QLHFD  231 (488)
Q Consensus       227 ~~~g~  231 (488)
                      +.+|+
T Consensus       287 ~~~G~  291 (299)
T PF14269_consen  287 TPDGE  291 (299)
T ss_pred             CCCCC
Confidence            99885

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=91.33  E-value=4.6  Score=37.25  Aligned_cols=106  Identities=18%  Similarity=0.167  Sum_probs=59.9

Q ss_pred             ceEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEECCCC
Q 011333           85 PYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNM  164 (488)
Q Consensus        85 P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~N~  164 (488)
                      ...+++.+++..+++-..++.|..++....   .......      +         .-.....+++++++.++++-..++
T Consensus       180 i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~---~~~~~~~------~---------~~~~i~~~~~~~~~~~~~~~~~~~  241 (289)
T cd00200         180 VNSVAFSPDGEKLLSSSSDGTIKLWDLSTG---KCLGTLR------G---------HENGVNSVAFSPDGYLLASGSEDG  241 (289)
T ss_pred             cceEEECCCcCEEEEecCCCcEEEEECCCC---ceecchh------h---------cCCceEEEEEcCCCcEEEEEcCCC
Confidence            456677777743333333667777776531   1111110      0         012467899999888888877678


Q ss_pred             EEEEEc-C-CC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEE
Q 011333          165 AIRKIS-D-SG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREI  226 (488)
Q Consensus       165 rIrkid-~-gg-VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI  226 (488)
                      .|+.++ . +. +..+.+.                 -....+++ +.+++.++++-..++.|+.+
T Consensus       242 ~i~i~~~~~~~~~~~~~~~-----------------~~~i~~~~-~~~~~~~l~~~~~d~~i~iw  288 (289)
T cd00200         242 TIRVWDLRTGECVQTLSGH-----------------TNSVTSLA-WSPDGKRLASGSADGTIRIW  288 (289)
T ss_pred             cEEEEEcCCceeEEEcccc-----------------CCcEEEEE-ECCCCCEEEEecCCCeEEec
Confidence            888888 3 33 2332211                 11346777 56666666666666666654

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=89.76  E-value=16  Score=33.66  Aligned_cols=110  Identities=15%  Similarity=0.166  Sum_probs=65.9

Q ss_pred             CceEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEECCC
Q 011333           84 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMN  163 (488)
Q Consensus        84 ~P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~N  163 (488)
                      ....+.+.+++.++++...++.|..++....  .....+.+.                -.....+++++++.++++-..+
T Consensus        95 ~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~----------------~~~i~~~~~~~~~~~l~~~~~~  156 (289)
T cd00200          95 YVSSVAFSPDGRILSSSSRDKTIKVWDVETG--KCLTTLRGH----------------TDWVNSVAFSPDGTFVASSSQD  156 (289)
T ss_pred             cEEEEEEcCCCCEEEEecCCCeEEEEECCCc--EEEEEeccC----------------CCcEEEEEEcCcCCEEEEEcCC
Confidence            3566777777777777776778888887631  112222111                1236788999888777776667


Q ss_pred             CEEEEEc-C-CC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCC-eEEEEECCCCeEEEEEcCC
Q 011333          164 MAIRKIS-D-SG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSC-SLLVIDRGNRAIREIQLHF  230 (488)
Q Consensus       164 ~rIrkid-~-gg-VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G-~LYVaD~gN~rIrkI~~~g  230 (488)
                      +.|+.++ . +. +..+...                 -.....++ ..+++ .|+++.. ++.|+.++...
T Consensus       157 ~~i~i~d~~~~~~~~~~~~~-----------------~~~i~~~~-~~~~~~~l~~~~~-~~~i~i~d~~~  208 (289)
T cd00200         157 GTIKLWDLRTGKCVATLTGH-----------------TGEVNSVA-FSPDGEKLLSSSS-DGTIKLWDLST  208 (289)
T ss_pred             CcEEEEEccccccceeEecC-----------------ccccceEE-ECCCcCEEEEecC-CCcEEEEECCC
Confidence            7888888 2 33 3333211                 01345666 45555 4555544 77888888764

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=89.26  E-value=13  Score=40.16  Aligned_cols=115  Identities=18%  Similarity=0.242  Sum_probs=76.7

Q ss_pred             CceEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEECCC
Q 011333           84 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMN  163 (488)
Q Consensus        84 ~P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~N  163 (488)
                      ..+.+++.++|+++++-...+.|+.++..+++  .+..+.+.       .+         .=+++++.++|+++++-...
T Consensus       248 ~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~--~~~~l~~h-------s~---------~is~~~f~~d~~~l~s~s~d  309 (456)
T KOG0266|consen  248 YVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGE--CVRKLKGH-------SD---------GISGLAFSPDGNLLVSASYD  309 (456)
T ss_pred             ceEEEEecCCCCEEEEecCCCcEEEEeccCCe--EEEeeecc-------CC---------ceEEEEECCCCCEEEEcCCC
Confidence            34889999999999998888999999987522  23333332       11         13578999999988877779


Q ss_pred             CEEEEEc-CCCc----EEEeCCccCCCCCCCCCCcccccCCCC-CeeEEECCCCeEEEEECCCCeEEEEEcCCCce
Q 011333          164 MAIRKIS-DSGV----TTIAGGKWGRGGGHVDGPSEDAKFSND-FDVVYIGSSCSLLVIDRGNRAIREIQLHFDDC  233 (488)
Q Consensus       164 ~rIrkid-~ggV----ttIaGg~~g~~~g~~dG~~~~a~f~~P-~gIa~vd~~G~LYVaD~gN~rIrkI~~~g~~~  233 (488)
                      ..|+.+| ..+.    .++.+...               -. | ..+. ...++..+++-..++.|+-+++....+
T Consensus       310 ~~i~vwd~~~~~~~~~~~~~~~~~---------------~~-~~~~~~-fsp~~~~ll~~~~d~~~~~w~l~~~~~  368 (456)
T KOG0266|consen  310 GTIRVWDLETGSKLCLKLLSGAEN---------------SA-PVTSVQ-FSPNGKYLLSASLDRTLKLWDLRSGKS  368 (456)
T ss_pred             ccEEEEECCCCceeeeecccCCCC---------------CC-ceeEEE-ECCCCcEEEEecCCCeEEEEEccCCcc
Confidence            9999999 3333    23332210               00 2 3444 667777777777777888877765433

>COG3211 PhoX Predicted phosphatase [General function prediction only]

Probab=88.35  E-value=5.3  Score=44.45  Aligned_cols=79  Identities=19%  Similarity=0.239  Sum_probs=50.6

Q ss_pred             cccCCcceEEEcC-CCcEEEEECCCC----------------EEEEEc-CC--------C--cEEEeCCccCCCCCCCCC
Q 011333          140 ARMNHPKGLTVDD-RGNIYIADTMNM----------------AIRKIS-DS--------G--VTTIAGGKWGRGGGHVDG  191 (488)
Q Consensus       140 a~Ln~P~GIAvD~-dG~LYVAD~~N~----------------rIrkid-~g--------g--VttIaGg~~g~~~g~~dG  191 (488)
                      +.|..|.+|++.+ .|.+|++.+.|.                +|.++- .+        .  +...+|.......+. ..
T Consensus       414 T~mdRpE~i~~~p~~g~Vy~~lTNn~~r~~~~aNpr~~n~~G~I~r~~p~~~d~t~~~ftWdlF~~aG~~~~~~~~~-~~  492 (616)
T COG3211         414 TPMDRPEWIAVNPGTGEVYFTLTNNGKRSDDAANPRAKNGYGQIVRWIPATGDHTDTKFTWDLFVEAGNPSVLEGGA-SA  492 (616)
T ss_pred             ccccCccceeecCCcceEEEEeCCCCccccccCCCcccccccceEEEecCCCCccCccceeeeeeecCCcccccccc-cc
Confidence            4689999999998 568999998765                455554 21        1  233344322211111 11


Q ss_pred             CcccccCCCCCeeEEECCCCeEEEEECCC
Q 011333          192 PSEDAKFSNDFDVVYIGSSCSLLVIDRGN  220 (488)
Q Consensus       192 ~~~~a~f~~P~gIa~vd~~G~LYVaD~gN  220 (488)
                      ......|++|-+|+ +|+.|+|+|+.-++
T Consensus       493 ~~~~~~f~~PDnl~-fD~~GrLWi~TDg~  520 (616)
T COG3211         493 NINANWFNSPDNLA-FDPWGRLWIQTDGS  520 (616)
T ss_pred             CcccccccCCCceE-ECCCCCEEEEecCC
Confidence            12235699999999 89999999986543

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=87.43  E-value=15  Score=38.01  Aligned_cols=111  Identities=10%  Similarity=0.094  Sum_probs=71.8

Q ss_pred             ceEEEEcc-CCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEECCC
Q 011333           85 PYSVEVLP-GGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMN  163 (488)
Q Consensus        85 P~GIaVd~-dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~N  163 (488)
                      -.+|.+.| +++.||+-........+|...+  .-+.++.|.    .            ..-+.|.+-|+|.-|++=..+
T Consensus       189 V~slsl~p~~~ntFvSg~cD~~aklWD~R~~--~c~qtF~gh----e------------sDINsv~ffP~G~afatGSDD  250 (343)
T KOG0286|consen  189 VMSLSLSPSDGNTFVSGGCDKSAKLWDVRSG--QCVQTFEGH----E------------SDINSVRFFPSGDAFATGSDD  250 (343)
T ss_pred             EEEEecCCCCCCeEEecccccceeeeeccCc--ceeEeeccc----c------------cccceEEEccCCCeeeecCCC
Confidence            34666777 8888888666555555655421  233444333    1            124568999999999988888


Q ss_pred             CEEEEEc---CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcC
Q 011333          164 MAIRKIS---DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLH  229 (488)
Q Consensus       164 ~rIrkid---~ggVttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~  229 (488)
                      ...|.||   +..+.++....               ....-++|+ +..+|+|+++-..+..+.+++.-
T Consensus       251 ~tcRlyDlRaD~~~a~ys~~~---------------~~~gitSv~-FS~SGRlLfagy~d~~c~vWDtl  303 (343)
T KOG0286|consen  251 ATCRLYDLRADQELAVYSHDS---------------IICGITSVA-FSKSGRLLFAGYDDFTCNVWDTL  303 (343)
T ss_pred             ceeEEEeecCCcEEeeeccCc---------------ccCCceeEE-EcccccEEEeeecCCceeEeecc
Confidence            8889888   33465554321               112336788 67889999997777777777643

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=87.34  E-value=15  Score=42.12  Aligned_cols=112  Identities=13%  Similarity=0.160  Sum_probs=78.7

Q ss_pred             CCceEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEECC
Q 011333           83 IEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTM  162 (488)
Q Consensus        83 ~~P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~  162 (488)
                      ..-..++..|||.+.++-...++|..++...++  .+.|+-..                -+.-+++.+..+|+..++-+.
T Consensus       351 ~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sgf--C~vTFteH----------------ts~Vt~v~f~~~g~~llssSL  412 (893)
T KOG0291|consen  351 DRITSLAYSPDGQLIATGAEDGKVKVWNTQSGF--CFVTFTEH----------------TSGVTAVQFTARGNVLLSSSL  412 (893)
T ss_pred             cceeeEEECCCCcEEEeccCCCcEEEEeccCce--EEEEeccC----------------CCceEEEEEEecCCEEEEeec
Confidence            355678889999999999999999999987533  23333222                122357899999999999999


Q ss_pred             CCEEEEEc-CCC--cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEEC-CCCeEEEEEcC
Q 011333          163 NMAIRKIS-DSG--VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDR-GNRAIREIQLH  229 (488)
Q Consensus       163 N~rIrkid-~gg--VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~-gN~rIrkI~~~  229 (488)
                      .++||..| ...  ..|+..-             ...+|   .+|| +|++|.|.+|-. .+-.|.+++..
T Consensus       413 DGtVRAwDlkRYrNfRTft~P-------------~p~Qf---scva-vD~sGelV~AG~~d~F~IfvWS~q  466 (893)
T KOG0291|consen  413 DGTVRAWDLKRYRNFRTFTSP-------------EPIQF---SCVA-VDPSGELVCAGAQDSFEIFVWSVQ  466 (893)
T ss_pred             CCeEEeeeecccceeeeecCC-------------Cceee---eEEE-EcCCCCEEEeeccceEEEEEEEee
Confidence            99999999 332  4555431             11234   5788 899999888765 34567777654

>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller

Probab=87.31  E-value=0.47  Score=33.81  Aligned_cols=20  Identities=35%  Similarity=0.693  Sum_probs=16.9

Q ss_pred             CCcceEEEcCCCcEEEEECC
Q 011333          143 NHPKGLTVDDRGNIYIADTM  162 (488)
Q Consensus       143 n~P~GIAvD~dG~LYVAD~~  162 (488)
                      ..+++|++|++|+|||+=..
T Consensus        13 ~~~~~IavD~~GNiYv~G~T   32 (38)
T PF06739_consen   13 DYGNGIAVDSNGNIYVTGYT   32 (38)
T ss_pred             eeEEEEEECCCCCEEEEEee
Confidence            36899999999999998543

SBBP stands for Seven Bladed Beta Propeller.

>PRK02888 nitrous-oxide reductase; Validated

Probab=87.00  E-value=1.8  Score=48.71  Aligned_cols=76  Identities=20%  Similarity=0.178  Sum_probs=54.7

Q ss_pred             CCCceEEEEccCCc-EEEEECCCCeEEEEeCCCCcc------cccEEEecCCCCccccCCCcccccccCCcceEEEcCCC
Q 011333           82 GIEPYSVEVLPGGE-LLILDSANSNLYRISSSLSLY------SRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRG  154 (488)
Q Consensus        82 l~~P~GIaVd~dG~-LYVaD~~n~rI~kid~~g~~~------g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG  154 (488)
                      ..+|+||+++|||. +|++....+.|.+||......      .--.++++..+             -=..|...++|.+|
T Consensus       320 GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaeve-------------vGlGPLHTaFDg~G  386 (635)
T PRK02888        320 PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPE-------------LGLGPLHTAFDGRG  386 (635)
T ss_pred             CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeec-------------cCCCcceEEECCCC
Confidence            46999999999998 888888888999999863110      00012222210             01358899999999


Q ss_pred             cEEEEECCCCEEEEEc
Q 011333          155 NIYIADTMNMAIRKIS  170 (488)
Q Consensus       155 ~LYVAD~~N~rIrkid  170 (488)
                      +.|++=.....|.|++
T Consensus       387 ~aytslf~dsqv~kwn  402 (635)
T PRK02888        387 NAYTTLFLDSQIVKWN  402 (635)
T ss_pred             CEEEeEeecceeEEEe
Confidence            9999877778999988

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=86.45  E-value=25  Score=36.38  Aligned_cols=119  Identities=11%  Similarity=0.014  Sum_probs=72.9

Q ss_pred             CceEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEECCC
Q 011333           84 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMN  163 (488)
Q Consensus        84 ~P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~N  163 (488)
                      .+--.|+||+|.++++-.++..|..+|...-..|=..++ .       ..+     .....=++|-+.++|...+.-+.+
T Consensus       142 ~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf-~-------i~~-----~~~~ew~~l~FS~dGK~iLlsT~~  208 (311)
T KOG1446|consen  142 GRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTF-S-------ITD-----NDEAEWTDLEFSPDGKSILLSTNA  208 (311)
T ss_pred             CCcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeE-c-------cCC-----CCccceeeeEEcCCCCEEEEEeCC
Confidence            344567888888888877777888777641000111111 0       001     113344689999999855555567


Q ss_pred             CEEEEEc--CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCC
Q 011333          164 MAIRKIS--DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHF  230 (488)
Q Consensus       164 ~rIrkid--~gg-VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g  230 (488)
                      +.|..+|  +|. ..++.+-..              ..+.|.+-+ ..+++..+++-.++++|..+.++.
T Consensus       209 s~~~~lDAf~G~~~~tfs~~~~--------------~~~~~~~a~-ftPds~Fvl~gs~dg~i~vw~~~t  263 (311)
T KOG1446|consen  209 SFIYLLDAFDGTVKSTFSGYPN--------------AGNLPLSAT-FTPDSKFVLSGSDDGTIHVWNLET  263 (311)
T ss_pred             CcEEEEEccCCcEeeeEeeccC--------------CCCcceeEE-ECCCCcEEEEecCCCcEEEEEcCC
Confidence            8888888  666 355554321              123454445 567788888888889998888753

>PTZ00421 coronin; Provisional

Probab=86.19  E-value=51  Score=36.36  Aligned_cols=113  Identities=12%  Similarity=0.086  Sum_probs=68.4

Q ss_pred             ceEEEEcc-CCcEEEEECCCCeEEEEeCCCCcc-c----ccEEEecCCCCccccCCCcccccccCCcceEEEcCCC-cEE
Q 011333           85 PYSVEVLP-GGELLILDSANSNLYRISSSLSLY-S----RPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRG-NIY  157 (488)
Q Consensus        85 P~GIaVd~-dG~LYVaD~~n~rI~kid~~g~~~-g----~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG-~LY  157 (488)
                      -.++++++ +++++++-...+.|+.++...... .    .+..+.|       +         -..-..|++.+++ +++
T Consensus        78 V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~g-------H---------~~~V~~l~f~P~~~~iL  141 (493)
T PTZ00421         78 IIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQG-------H---------TKKVGIVSFHPSAMNVL  141 (493)
T ss_pred             EEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecC-------C---------CCcEEEEEeCcCCCCEE
Confidence            46788888 788778777788898888653110 0    0112211       1         1124568888875 577


Q ss_pred             EEECCCCEEEEEc-C-CC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCC
Q 011333          158 IADTMNMAIRKIS-D-SG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFD  231 (488)
Q Consensus       158 VAD~~N~rIrkid-~-gg-VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g~  231 (488)
                      ++=...+.|+.+| . +. +.++.+..                 ..-.+|+ ..++|.++++-..++.|+.+++...
T Consensus       142 aSgs~DgtVrIWDl~tg~~~~~l~~h~-----------------~~V~sla-~spdG~lLatgs~Dg~IrIwD~rsg  200 (493)
T PTZ00421        142 ASAGADMVVNVWDVERGKAVEVIKCHS-----------------DQITSLE-WNLDGSLLCTTSKDKKLNIIDPRDG  200 (493)
T ss_pred             EEEeCCCEEEEEECCCCeEEEEEcCCC-----------------CceEEEE-EECCCCEEEEecCCCEEEEEECCCC
Confidence            7666678888888 3 33 33332211                 1235666 4556777777777788888887643

>KOG3567 consensus Peptidylglycine alpha-amidating monooxygenase [Posttranslational modification, protein turnover, chaperones]

Probab=85.71  E-value=2.3  Score=46.04  Aligned_cols=128  Identities=15%  Similarity=0.151  Sum_probs=81.8

Q ss_pred             CCCceEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEEC
Q 011333           82 GIEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADT  161 (488)
Q Consensus        82 l~~P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~  161 (488)
                      +.-|+|+.+|.+|+.+++|-.-|.+.++.+..   +.+.++.|.. -.+|     .....|+.|...+|..+|.|+++|.
T Consensus       167 lqvhyg~t~df~~~~d~TgV~mH~t~kp~pkl---a~~~L~l~~~-tvp~-----~~~~~f~~~tsc~v~~n~~ihvfa~  237 (501)
T KOG3567|consen  167 LQVHYGLTIDFDGNYDVTGVGMHQTEKPQPKL---AKTMLLLGDG-TVPG-----EGTKHFETPTSCAVEENGPIHVFAY  237 (501)
T ss_pred             EEeccccccCCCCCcccccceeeeeccCCchh---hceEEeecCC-ccCC-----CCccccCCCceEEEecCcceeeEEe
Confidence            34688888888999999999999999998874   3445554431 1111     1235588999999999999999997


Q ss_pred             C-CCEEEEEc-CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCC-CeEEEEECCCCeEEEEEcC
Q 011333          162 M-NMAIRKIS-DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSS-CSLLVIDRGNRAIREIQLH  229 (488)
Q Consensus       162 ~-N~rIrkid-~gg-VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~-G~LYVaD~gN~rIrkI~~~  229 (488)
                      . |.+|.+.. .|. |.-.-.+.+-. .|.          ..|.-..++..- ..+-|+|..|.+++.+-..
T Consensus       238 r~hTh~Lgk~vsG~lv~q~~~g~w~~-ig~----------r~Pq~pqlf~~v~~~~~iadgD~~~vrC~~~s  298 (501)
T KOG3567|consen  238 RCHTHILGKVVSGYLVAQKHEGHWTL-IGR----------RDPQLPQLFEPVNHIVCVADGDNQRVRCFFQS  298 (501)
T ss_pred             eeeehhhcceeeeeEeeeccCcceee-ccc----------cCCCchhhhcCCCcceeeecCCceEEEEEEcc
Confidence            6 55666655 333 22111111110 111          123333333333 3788999999999998765

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=84.58  E-value=72  Score=35.49  Aligned_cols=111  Identities=20%  Similarity=0.296  Sum_probs=67.4

Q ss_pred             CCceEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCccccccc-CCcceEEEcCCCcEEEEEC
Q 011333           83 IEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARM-NHPKGLTVDDRGNIYIADT  161 (488)
Q Consensus        83 ~~P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~L-n~P~GIAvD~dG~LYVAD~  161 (488)
                      +.-.+++.+..++||.+-.. ..+++++..+.             ++...     ..-.| .+|.|+|+.++|.+.|.-.
T Consensus       364 nqI~~~~~~~~~~~~t~g~D-d~l~~~~~~~~-------------~~t~~-----~~~~lg~QP~~lav~~d~~~avv~~  424 (603)
T KOG0318|consen  364 NQIKGMAASESGELFTIGWD-DTLRVISLKDN-------------GYTKS-----EVVKLGSQPKGLAVLSDGGTAVVAC  424 (603)
T ss_pred             ceEEEEeecCCCcEEEEecC-CeEEEEecccC-------------ccccc-----ceeecCCCceeEEEcCCCCEEEEEe
Confidence            34456666666777776553 36667665421             11110     00112 5799999999986555443


Q ss_pred             CCCEEEEEc-CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCc
Q 011333          162 MNMAIRKIS-DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDD  232 (488)
Q Consensus       162 ~N~rIrkid-~ggVttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g~~  232 (488)
                      . ..|..+. .++++++--+                 | .|.++| +.++++....--..+.|+.+.+.|+.
T Consensus       425 ~-~~iv~l~~~~~~~~~~~~-----------------y-~~s~vA-v~~~~~~vaVGG~Dgkvhvysl~g~~  476 (603)
T KOG0318|consen  425 I-SDIVLLQDQTKVSSIPIG-----------------Y-ESSAVA-VSPDGSEVAVGGQDGKVHVYSLSGDE  476 (603)
T ss_pred             c-CcEEEEecCCcceeeccc-----------------c-ccceEE-EcCCCCEEEEecccceEEEEEecCCc
Confidence            3 4455555 4556555321                 1 577888 67778777777667789999888754

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=84.53  E-value=8.6  Score=39.08  Aligned_cols=126  Identities=18%  Similarity=0.168  Sum_probs=69.0

Q ss_pred             CceEEEEccCCcEEEEECCCCeEEEEeCCCC-cccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEECC
Q 011333           84 EPYSVEVLPGGELLILDSANSNLYRISSSLS-LYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTM  162 (488)
Q Consensus        84 ~P~GIaVd~dG~LYVaD~~n~rI~kid~~g~-~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~  162 (488)
                      ..+||+-| +..||++|. +++|+.+|+..- ..+.+.+..+          |.    .+..-+-+-.- +|.||.-=..
T Consensus       131 EGWGLt~d-g~~Li~SDG-S~~L~~~dP~~f~~~~~i~V~~~----------g~----pv~~LNELE~i-~G~IyANVW~  193 (264)
T PF05096_consen  131 EGWGLTSD-GKRLIMSDG-SSRLYFLDPETFKEVRTIQVTDN----------GR----PVSNLNELEYI-NGKIYANVWQ  193 (264)
T ss_dssp             S--EEEEC-SSCEEEE-S-SSEEEEE-TTT-SEEEEEE-EET----------TE----E---EEEEEEE-TTEEEEEETT
T ss_pred             cceEEEcC-CCEEEEECC-ccceEEECCcccceEEEEEEEEC----------CE----ECCCcEeEEEE-cCEEEEEeCC
Confidence            67899854 346888885 789999998742 1222222211          11    12233334333 7999999999


Q ss_pred             CCEEEEEc--CCCcEEEeCCccCCC-CC-CCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcC
Q 011333          163 NMAIRKIS--DSGVTTIAGGKWGRG-GG-HVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLH  229 (488)
Q Consensus       163 N~rIrkid--~ggVttIaGg~~g~~-~g-~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~  229 (488)
                      .++|.+||  +|.|..+..-..-.. .. ..+-.+.+   .--+|||+.+..+.+||+-..=..+.+|.+.
T Consensus       194 td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~---dVLNGIAyd~~~~~l~vTGK~Wp~lyeV~l~  261 (264)
T PF05096_consen  194 TDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDD---DVLNGIAYDPETDRLFVTGKLWPKLYEVKLV  261 (264)
T ss_dssp             SSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TT---S-EEEEEEETTTTEEEEEETT-SEEEEEEEE
T ss_pred             CCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccC---CeeEeEeEeCCCCEEEEEeCCCCceEEEEEE
Confidence            99999999  566766554211000 00 00000111   2237999888899999998766777777654

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=84.42  E-value=21  Score=37.66  Aligned_cols=108  Identities=14%  Similarity=0.181  Sum_probs=57.7

Q ss_pred             CcEEEEEC----CCCeEEEEeCCCCcccccEEEecCC-CCccccCCCcccccccCCcceEEEcCCC-cEEEEECCC----
Q 011333           94 GELLILDS----ANSNLYRISSSLSLYSRPKLVAGSA-EGYSGHVDGKPREARMNHPKGLTVDDRG-NIYIADTMN----  163 (488)
Q Consensus        94 G~LYVaD~----~n~rI~kid~~g~~~g~i~tvaG~~-~G~~G~~dG~a~~a~Ln~P~GIAvD~dG-~LYVAD~~N----  163 (488)
                      .++||.|.    ..+||+.+|.+.+   +   +.|.. .|             |..  .++++++| .+|++++.-    
T Consensus         3 ~rvyV~D~~~~~~~~rv~viD~d~~---k---~lGmi~~g-------------~~~--~~~~spdgk~~y~a~T~~sR~~   61 (342)
T PF06433_consen    3 HRVYVQDPVFFHMTSRVYVIDADSG---K---LLGMIDTG-------------FLG--NVALSPDGKTIYVAETFYSRGT   61 (342)
T ss_dssp             TEEEEEE-GGGGSSEEEEEEETTTT---E---EEEEEEEE-------------SSE--EEEE-TTSSEEEEEEEEEEETT
T ss_pred             cEEEEECCccccccceEEEEECCCC---c---EEEEeecc-------------cCC--ceeECCCCCEEEEEEEEEeccc
Confidence            46888885    2368888887742   2   22221 01             211  27788888 499998752    


Q ss_pred             -----CEEEEEcCCCcEEEeC--CccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEEC-CCCeEEEEEcCCC
Q 011333          164 -----MAIRKISDSGVTTIAG--GKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDR-GNRAIREIQLHFD  231 (488)
Q Consensus       164 -----~rIrkid~ggVttIaG--g~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~-gN~rIrkI~~~g~  231 (488)
                           ..|..+|...+.....  .+..        + ....+..++-+++.+++..+||.+. -...|-++|+...
T Consensus        62 rG~RtDvv~~~D~~TL~~~~EI~iP~k--------~-R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~  128 (342)
T PF06433_consen   62 RGERTDVVEIWDTQTLSPTGEIEIPPK--------P-RAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAK  128 (342)
T ss_dssp             EEEEEEEEEEEETTTTEEEEEEEETTS----------B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTT
T ss_pred             cccceeEEEEEecCcCcccceEecCCc--------c-hheecccccceEEccCCcEEEEEccCCCCeEEEEECCCC
Confidence                 2355666444432221  1100        0 0112456777887677778899884 3567777777653

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=83.92  E-value=4.3  Score=28.17  Aligned_cols=39  Identities=23%  Similarity=0.388  Sum_probs=27.2

Q ss_pred             CCCeEEEEECCCCeEEEEEcCCCce-EEeccCCCcceEEE
Q 011333          209 SSCSLLVIDRGNRAIREIQLHFDDC-AYQYGSSFPLGIAV  247 (488)
Q Consensus       209 ~~G~LYVaD~gN~rIrkI~~~g~~~-~~~~~~g~P~GIav  247 (488)
                      ..+.|||++.+.+.|..|++..... ........|.+|++
T Consensus         2 d~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~   41 (42)
T TIGR02276         2 DGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAV   41 (42)
T ss_pred             CCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence            4567999999999999999864333 22333346777765

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>KOG1215 consensus Low-density lipoprotein receptors containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]

Probab=83.36  E-value=13  Score=43.57  Aligned_cols=134  Identities=19%  Similarity=0.203  Sum_probs=93.2

Q ss_pred             ceEEEEcc-CCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcC-CCcEEEEECC
Q 011333           85 PYSVEVLP-GGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDD-RGNIYIADTM  162 (488)
Q Consensus        85 P~GIaVd~-dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~-dG~LYVAD~~  162 (488)
                      ...+.++. ++.+|-+|....+|.+....+...   ..+.+.               ....|.|+++|- .+++|.+|..
T Consensus       439 ~~~~d~d~~~~~i~~~d~~~~~i~~~~~~~~~~---~~~~~~---------------g~~~~~~lavD~~~~~~y~tDe~  500 (877)
T KOG1215|consen  439 AVALDFDVLNNRIYWADLSDEKICRASQDGSSE---CELCGD---------------GLCIPEGLAVDWIGDNIYWTDEG  500 (877)
T ss_pred             ceEEEEEecCCEEEEEeccCCeEeeeccCCCcc---ceEecc---------------CccccCcEEEEeccCCceecccC
Confidence            33444443 457888998888888888775321   112222               156789999997 5589999999


Q ss_pred             CCEEEEEc-CCCc-EEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECC-CCeEEEEEcCCCceEEe--c
Q 011333          163 NMAIRKIS-DSGV-TTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRG-NRAIREIQLHFDDCAYQ--Y  237 (488)
Q Consensus       163 N~rIrkid-~ggV-ttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~g-N~rIrkI~~~g~~~~~~--~  237 (488)
                      +..|.+.+ ++.. .+++..                .+..|..+++.+..|.+|.+|++ ..+|-+-.++|......  .
T Consensus       501 ~~~i~v~~~~g~~~~vl~~~----------------~l~~~r~~~v~p~~g~~~wtd~~~~~~i~ra~~dg~~~~~l~~~  564 (877)
T KOG1215|consen  501 NCLIEVADLDGSSRKVLVSK----------------DLDLPRSIAVDPEKGLMFWTDWGQPPRIERASLDGSERAVLVTN  564 (877)
T ss_pred             CceeEEEEccCCceeEEEec----------------CCCCccceeeccccCeeEEecCCCCchhhhhcCCCCCceEEEeC
Confidence            99999888 5542 344432                13578888866778999999998 55788888888655442  3


Q ss_pred             cCCCcceEEEEecCC
Q 011333          238 GSSFPLGIAVLLAAG  252 (488)
Q Consensus       238 ~~g~P~GIav~~g~g  252 (488)
                      +...|.|++++....
T Consensus       565 ~~~~p~glt~d~~~~  579 (877)
T KOG1215|consen  565 GILWPNGLTIDYETD  579 (877)
T ss_pred             CccCCCcceEEeecc
Confidence            357899999986544

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=83.16  E-value=5.1  Score=27.76  Aligned_cols=20  Identities=15%  Similarity=0.282  Sum_probs=17.4

Q ss_pred             CcEEEEECCCCeEEEEeCCC
Q 011333           94 GELLILDSANSNLYRISSSL  113 (488)
Q Consensus        94 G~LYVaD~~n~rI~kid~~g  113 (488)
                      +.|||++...+.|..++..+
T Consensus         4 ~~lyv~~~~~~~v~~id~~~   23 (42)
T TIGR02276         4 TKLYVTNSGSNTVSVIDTAT   23 (42)
T ss_pred             CEEEEEeCCCCEEEEEECCC
Confidence            45999999999999999864

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>TIGR03032 conserved hypothetical protein TIGR03032

Probab=82.83  E-value=3.5  Score=42.95  Aligned_cols=57  Identities=21%  Similarity=0.219  Sum_probs=41.6

Q ss_pred             CCCceEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEE
Q 011333           82 GIEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIAD  160 (488)
Q Consensus        82 l~~P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD  160 (488)
                      +.-|++... .+|.||++|.+.+.|.++|+++   |+...++--    +            ..|+||++.  |++.|.-
T Consensus       202 LsmPhSPRW-hdgrLwvldsgtGev~~vD~~~---G~~e~Va~v----p------------G~~rGL~f~--G~llvVg  258 (335)
T TIGR03032       202 LSMPHSPRW-YQGKLWLLNSGRGELGYVDPQA---GKFQPVAFL----P------------GFTRGLAFA--GDFAFVG  258 (335)
T ss_pred             ccCCcCCcE-eCCeEEEEECCCCEEEEEcCCC---CcEEEEEEC----C------------CCCccccee--CCEEEEE
Confidence            345666666 3899999999999999999975   455555432    1            248999998  8766653

This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=81.86  E-value=67  Score=33.16  Aligned_cols=57  Identities=12%  Similarity=0.316  Sum_probs=32.3

Q ss_pred             CCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEECCCCEEEEEc
Q 011333           93 GGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNMAIRKIS  170 (488)
Q Consensus        93 dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~N~rIrkid  170 (488)
                      ++.||+.+. ++.|+.++..+   |++..-......             +  -.+++++ ++.+||++. ++.+..+|
T Consensus        65 ~~~v~v~~~-~g~v~a~d~~t---G~~~W~~~~~~~-------------~--~~~p~v~-~~~v~v~~~-~g~l~ald  121 (377)
T TIGR03300        65 GGKVYAADA-DGTVVALDAET---GKRLWRVDLDER-------------L--SGGVGAD-GGLVFVGTE-KGEVIALD  121 (377)
T ss_pred             CCEEEEECC-CCeEEEEEccC---CcEeeeecCCCC-------------c--ccceEEc-CCEEEEEcC-CCEEEEEE
Confidence            667888765 46788898654   222221111000             1  1124555 677888764 67888888

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=81.49  E-value=59  Score=33.53  Aligned_cols=112  Identities=9%  Similarity=0.046  Sum_probs=77.9

Q ss_pred             eEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEECCCCE
Q 011333           86 YSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNMA  165 (488)
Q Consensus        86 ~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~N~r  165 (488)
                      .++++.+||+..++-+..+.++.+|..++.  ....+.|..                +.-.++++++|..-.|+-+....
T Consensus        67 ~dv~~s~dg~~alS~swD~~lrlWDl~~g~--~t~~f~GH~----------------~dVlsva~s~dn~qivSGSrDkT  128 (315)
T KOG0279|consen   67 SDVVLSSDGNFALSASWDGTLRLWDLATGE--STRRFVGHT----------------KDVLSVAFSTDNRQIVSGSRDKT  128 (315)
T ss_pred             cceEEccCCceEEeccccceEEEEEecCCc--EEEEEEecC----------------CceEEEEecCCCceeecCCCcce
Confidence            577888999999998888899999988642  234455541                22457999999999998887888


Q ss_pred             EEEEc-CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCC-CeEEEEEcCC
Q 011333          166 IRKIS-DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGN-RAIREIQLHF  230 (488)
Q Consensus       166 Irkid-~gg-VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN-~rIrkI~~~g  230 (488)
                      |..++ -|. ..++.....               =..-.+|.+++...+.+|+..+. ..|+..++.+
T Consensus       129 iklwnt~g~ck~t~~~~~~---------------~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~  181 (315)
T KOG0279|consen  129 IKLWNTLGVCKYTIHEDSH---------------REWVSCVRFSPNESNPIIVSASWDKTVKVWNLRN  181 (315)
T ss_pred             eeeeeecccEEEEEecCCC---------------cCcEEEEEEcCCCCCcEEEEccCCceEEEEccCC
Confidence            88888 344 566665421               12456788777765666666654 4566666654

>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller

Probab=81.46  E-value=2.8  Score=29.83  Aligned_cols=22  Identities=14%  Similarity=0.122  Sum_probs=18.2

Q ss_pred             CCCceEEEEccCCcEEEEECCC
Q 011333           82 GIEPYSVEVLPGGELLILDSAN  103 (488)
Q Consensus        82 l~~P~GIaVd~dG~LYVaD~~n  103 (488)
                      ...+.+|++|++|++||+-..+
T Consensus        12 ~~~~~~IavD~~GNiYv~G~T~   33 (38)
T PF06739_consen   12 QDYGNGIAVDSNGNIYVTGYTN   33 (38)
T ss_pred             ceeEEEEEECCCCCEEEEEeec
Confidence            3479999999999999996544

SBBP stands for Seven Bladed Beta Propeller.

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=80.67  E-value=11  Score=42.88  Aligned_cols=109  Identities=12%  Similarity=0.172  Sum_probs=69.4

Q ss_pred             EEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEECCCCEE
Q 011333           87 SVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNMAI  166 (488)
Q Consensus        87 GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~N~rI  166 (488)
                      .+.+.|+.+...+-+..+.++.+|...+  ..++++.|.    .            ..-..|++.++|.-.++=...+.|
T Consensus       540 cv~FHPNs~Y~aTGSsD~tVRlWDv~~G--~~VRiF~GH----~------------~~V~al~~Sp~Gr~LaSg~ed~~I  601 (707)
T KOG0263|consen  540 CVSFHPNSNYVATGSSDRTVRLWDVSTG--NSVRIFTGH----K------------GPVTALAFSPCGRYLASGDEDGLI  601 (707)
T ss_pred             eEEECCcccccccCCCCceEEEEEcCCC--cEEEEecCC----C------------CceEEEEEcCCCceEeecccCCcE
Confidence            3666777665555566677777776542  245555443    1            123468888888766655556777


Q ss_pred             EEEc-C-CC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCC
Q 011333          167 RKIS-D-SG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFD  231 (488)
Q Consensus       167 rkid-~-gg-VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g~  231 (488)
                      ..+| . +. +..+.|-.                 ..-..|. +..+|+++|++.+++.|+.+|....
T Consensus       602 ~iWDl~~~~~v~~l~~Ht-----------------~ti~Sls-FS~dg~vLasgg~DnsV~lWD~~~~  651 (707)
T KOG0263|consen  602 KIWDLANGSLVKQLKGHT-----------------GTIYSLS-FSRDGNVLASGGADNSVRLWDLTKV  651 (707)
T ss_pred             EEEEcCCCcchhhhhccc-----------------CceeEEE-EecCCCEEEecCCCCeEEEEEchhh
Confidence            7777 2 23 44443321                 1235667 5788999999999999999998753

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	488
3tc9_A	430	Crystal Structure Of A Hypothetical Hydrolase (Bt_3		3e-04
3hrp_A	409	Crystal Structure Of Structural Genomics Protein Of		8e-04

>pdb|3TC9|A Chain A, Crystal Structure Of A Hypothetical Hydrolase (Bt_3476) From Bacteroides Thetaiotaomicron Vpi-5482 At 2.23 A Resolution Length = 430

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 55/119 (46%), Gaps = 12/119 (10%)
Query: 119 PKLVAGSAEGYSGHVDGKPREARMNHPKGLTV---------DDRGNIYIADTMNMAIRKI 169
           P +V G  +G    VDG  ++AR + P+  T           D  + Y  D  N  IR +
Sbjct: 309 PYIVCGQ-QGAKDWVDGVGKKARXHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRIL 367
Query: 170 SDSG-VTTIAGGKWGRGGGHVDGP-SEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREI 226
           +  G VTT AG       G+ DG   ++A+F++   +VY        + DR NR IR+I
Sbjct: 368 TPQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKI 426

>pdb|3HRP|A Chain A, Crystal Structure Of Structural Genomics Protein Of Unknown Function (np_812590.1) From Bacteroides Thetaiotaomicron Vpi-5482 At 1.70 A Resolution Length = 409

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 46/99 (46%), Gaps = 6/99 (6%)
Query: 134 DGKPREARMNHPKGLTVDDRGNIYIADTMN-MAIRK--ISDSGVTTIAGGKWGRGGGHVD 190
           DG   EA    P G TVD+ GN YI D      +RK  I D  V+T+AG         +D
Sbjct: 314 DGLREEALFAQPNGXTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVAGQV--DVASQID 371
Query: 191 GPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLH 229
           G   +A F+  +D+ Y G      + +   +AIR+  + 
Sbjct: 372 GTPLEATFNYPYDICYDGEG-GYWIAEAWGKAIRKYAVE 409

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	488
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	6e-35
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	2e-16
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	4e-15
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	1e-32
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	5e-13
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	2e-04
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	3e-04
3kya_A	496	Putative phosphatase; structural genomics, joint c	9e-26
3kya_A	496	Putative phosphatase; structural genomics, joint c	1e-15
3kya_A	496	Putative phosphatase; structural genomics, joint c	1e-05
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	3e-13
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	5e-13
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	2e-09
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	1e-10
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	9e-10
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	2e-09
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	3e-08
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	6e-05
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	2e-10
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	4e-08
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	3e-06
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	4e-10
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	4e-09
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	3e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-09
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	5e-09
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	1e-08
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	1e-07

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} Length = 409

 Score =  134 bits (338), Expect = 6e-35
 Identities = 46/198 (23%), Positives = 74/198 (37%), Gaps = 13/198 (6%)

Query: 34  GFVSNGVSVLMKWLWSLKTTTKTAITGRPMMKFESGYTVETVFDGSKLGI--EPYSVEVL 91
                G   L +    L         GR  +K +    ++ +     LG    PY +   
Sbjct: 217 FSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYF 276

Query: 92  PGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVD 151
                 + D   S++Y+I+         +   GSA       DG   EA    P G+TVD
Sbjct: 277 VDSNFYMSDQNLSSVYKITPD----GECEWFCGSA-TQKTVQDGLREEALFAQPNGMTVD 331

Query: 152 DRGNIYIADTM-NMAIRKI--SDSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIG 208
           + GN YI D      +RK+   D  V+T+AG         +DG   +A F+  +D+    
Sbjct: 332 EDGNFYIVDGFKGYCLRKLDILDGYVSTVAGQ--VDVASQIDGTPLEATFNYPYDIC-YD 388

Query: 209 SSCSLLVIDRGNRAIREI 226
                 + +   +AIR+ 
Sbjct: 389 GEGGYWIAEAWGKAIRKY 406

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} Length = 409

 Score = 80.4 bits (198), Expect = 2e-16
 Identities = 24/166 (14%), Positives = 46/166 (27%), Gaps = 30/166 (18%)

Query: 67  ESGYTVETVFDGSKLGIEPYSVEVLPGG-----ELLILDSANSNLYRISSSLSLYSRPKL 121
           E     + +  GS  G +   V+V            ++   N+ LY ++           
Sbjct: 27  EGKLREKVIVKGSNFGTDKSKVKVYFVDEAAERLSTVIGIDNNTLYCLAPRQLPGGNRIK 86

Query: 122 V------------------------AGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIY 157
           V                        +GSA    G+ DG    A+  +  G+       + 
Sbjct: 87  VIVDGKEVTTDGTFKYEQAQNVSTISGSA-SKDGNDDGDLASAKFKYMWGIAAVGNNTVL 145

Query: 158 IADTMNMAIRKISDSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFD 203
                +  +R IS             +GG       +   +S  ++
Sbjct: 146 AYQRDDPRVRLISVDDNKVTTVHPGFKGGKPAVTKDKQRVYSIGWE 191

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} Length = 409

 Score = 76.1 bits (187), Expect = 4e-15
 Identities = 25/88 (28%), Positives = 36/88 (40%), Gaps = 5/88 (5%)

Query: 84  EPYSVEVLPGGELLILDSANSNLYR-ISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARM 142
           +P  + V   G   I+D       R +       S    VAG     +  +DG P EA  
Sbjct: 324 QPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVS---TVAGQV-DVASQIDGTPLEATF 379

Query: 143 NHPKGLTVDDRGNIYIADTMNMAIRKIS 170
           N+P  +  D  G  +IA+    AIRK +
Sbjct: 380 NYPYDICYDGEGGYWIAEAWGKAIRKYA 407

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} Length = 430

 Score =  128 bits (322), Expect = 1e-32
 Identities = 50/222 (22%), Positives = 80/222 (36%), Gaps = 19/222 (8%)

Query: 19  ITAAPSSASPAKIVSGFVSNGVSVLMKWLWSLKTTTKTAITGRPMMKFESGYTVETVFDG 78
           +T         ++  G   NG          L   +     G+      +      +F  
Sbjct: 210 LTRESGFKVITELTKGQNCNGAETHPIN-GELYFNSWN--AGQVFRYDFTTQETTPLFTI 266

Query: 79  SKLGIEPYSVEVLP-GGELLILDSANSNLYRISSSLSL--YSRPKLVAGSAEGYSGHVDG 135
              G   + ++  P G    I+      + R          + P +V G   G    VDG
Sbjct: 267 QDSGW-EFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQ-GAKDWVDG 324

Query: 136 KPREARMNHPKGLT---------VDDRGNIYIADTMNMAIRKISDSG-VTTIAGGKWGRG 185
             ++ARM+ P+  T           D  + Y  D  N  IR ++  G VTT AG      
Sbjct: 325 VGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTPQGRVTTFAGRGSNGT 384

Query: 186 GGHVDG-PSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREI 226
            G+ DG   ++A+F++   +VY        + DR NR IR+I
Sbjct: 385 SGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKI 426

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} Length = 430

 Score = 69.8 bits (170), Expect = 5e-13
 Identities = 27/89 (30%), Positives = 36/89 (40%), Gaps = 7/89 (7%)

Query: 85  PYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAE-GYSGHVDGKPR-EARM 142
           P         +    D  N  +  ++       R    AG    G SG+ DG  R EAR 
Sbjct: 343 PAYKGSSDEYDFYFCDRENHCIRILTPQ----GRVTTFAGRGSNGTSGYNDGDLRQEARF 398

Query: 143 NHPKGLTVDDRGN-IYIADTMNMAIRKIS 170
           NHP+G+  D+     +I D  N  IRKI 
Sbjct: 399 NHPEGIVYDEERECFFIGDRENRRIRKIG 427

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} Length = 430

 Score = 42.8 bits (100), Expect = 2e-04
 Identities = 20/145 (13%), Positives = 46/145 (31%), Gaps = 24/145 (16%)

Query: 74  TVFDGSKLGIEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGH- 132
            V   +  G    S+    G E+   ++    +Y+    ++         G+    +   
Sbjct: 70  VVPAKAYDGDIKLSILNDEGEEIANTEANEKFVYQKKMLVTT------FLGTMYDGNTKY 123

Query: 133 --VDGKPRE-ARMNHPKGLTVDDRGN--IYIADTMNMAIRKI--SDSGVTTIAGGKWGRG 185
              DG   +         L+ D + +  +Y+    +   R I      V+T+       G
Sbjct: 124 DLKDGPFDDCGGFGGAVWLSFDPKNHNHLYLVGEQH-PTRLIDFEKEYVSTVYS-----G 177

Query: 186 GGHVDGPSEDAKFSNDFDVVYIGSS 210
              V        ++++ D + I + 
Sbjct: 178 LSKVRTIC----WTHEADSMIITND 198

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} Length = 430

 Score = 42.4 bits (99), Expect = 3e-04
 Identities = 26/166 (15%), Positives = 45/166 (27%), Gaps = 30/166 (18%)

Query: 67  ESGYTVETVFDGSKLGIEPYSVEVLPGG-ELLILDSANSNLYRISSSLSLYSRPKLVAGS 125
           E G     +  G   G +   ++V  GG +  ++ +   +LY +                
Sbjct: 27  EGGLGTRMLLYGENFGSDISKIKVTIGGQDSKVVGAKGKSLYCVV--------------- 71

Query: 126 AEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNMAIRKISDSGVTTIAG--GKWG 183
                      P +A     K   ++D G        N          VTT  G      
Sbjct: 72  -----------PAKAYDGDIKLSILNDEGEEIANTEANEKFVYQKKMLVTTFLGTMYDGN 120

Query: 184 RGGGHVDGP-SEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQL 228
                 DGP  +   F     + +   + + L +       R I  
Sbjct: 121 TKYDLKDGPFDDCGGFGGAVWLSFDPKNHNHLYLVGEQHPTRLIDF 166

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} Length = 496

 Score =  109 bits (272), Expect = 9e-26
 Identities = 43/204 (21%), Positives = 66/204 (32%), Gaps = 19/204 (9%)

Query: 43  LMKWLWSLKTTTKTAITGRPMMKFESGYTVETVFDGSKLGIEPYSVEVLPGGELLILDSA 102
           + +        T         +   +  T + +F  +    E        G         
Sbjct: 271 VFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVIN 330

Query: 103 NSNLYRIS--SSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHP--------KGLTVDD 152
           N    R         +  P    G     SG+ D    EARMN+P           T ++
Sbjct: 331 NHYFMRSDYDEIKKEFITPYNFVGGY-KQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEE 389

Query: 153 RGNIYIADTMNMAIRKISDSG-VTTIAG------GKWGRGGGHVDG-PSEDAKFSNDFDV 204
             + Y  D +N  +RK++  G V+T AG         G   G  DG   E A+F +   +
Sbjct: 390 EYDFYFVDRLNFCVRKVTPEGIVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGL 449

Query: 205 VYIGSSCSLLVIDRGNRAIREIQL 228
           VY        V D+    IR I +
Sbjct: 450 VYDDVKEMFYVHDQVGHTIRTISM 473

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} Length = 496

 Score = 78.1 bits (191), Expect = 1e-15
 Identities = 31/190 (16%), Positives = 54/190 (28%), Gaps = 27/190 (14%)

Query: 27  SPAKIVSGFVSNGVSVLMKWLWSLKTTTKTAITGRPMMKFESGYT----VETVFDGSKLG 82
            P    + F        M+  +                  +SGY      E   +    G
Sbjct: 318 HPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQG 377

Query: 83  I--EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAE-------GYSGHV 133
           +  +          +   +D  N  + +++            AG             G  
Sbjct: 378 VFVKNPDYTGEEEYDFYFVDRLNFCVRKVTPE----GIVSTYAGRGASTSLADGNQWGTD 433

Query: 134 DGKPR-EARMNHPKGLTVDDRGN-IYIADTMNMAIRKISDSGVTTIAGGKWGRGGGHVDG 191
           DG  R  AR     GL  DD     Y+ D +   IR IS      +AG +        + 
Sbjct: 434 DGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEENVAGDE--------NI 485

Query: 192 PSEDAKFSND 201
           P +++   ++
Sbjct: 486 PEDESTVESN 495

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} Length = 496

 Score = 46.9 bits (110), Expect = 1e-05
 Identities = 18/168 (10%), Positives = 36/168 (21%), Gaps = 9/168 (5%)

Query: 68  SGYTVETVFDGSKLGIEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPK--LVAGS 125
               + +  + + +                  D A   +  I         P   ++  +
Sbjct: 170 KNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRN 229

Query: 126 AEGYSGHVDGKPREARMNHPKGLTVDDR-GNIYIADTMNMAIRKISDSGV-TTIAGG--- 180
           A+G           A      G T+    G +Y        + ++       TI  G   
Sbjct: 230 ADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSW 289

Query: 181 --KWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREI 226
                            A  S +F +    +          N      
Sbjct: 290 DPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRS 337

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A Length = 270

 Score = 68.8 bits (169), Expect = 3e-13
 Identities = 37/182 (20%), Positives = 60/182 (32%), Gaps = 36/182 (19%)

Query: 68  SGYTVETVFDGSKLGIEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAE 127
           SG TV   F G    + P  V V   G + +         R+          KL  GS  
Sbjct: 10  SGQTVLP-FTGIDFRLSPSGVAVDSAGNVYVTSEGMYG--RVV---------KLATGSTG 57

Query: 128 GYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNMAIRKISDSGVTTIAGGKWGRGGG 187
                 +G      +  P+GL VD  G +Y+ D  N  +   + S   T+          
Sbjct: 58  TTVLPFNG------LYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPF------- 104

Query: 188 HVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQL--HFDDCAYQYGSSFPLGI 245
                      +    +  + +  ++ V DRGN  + ++             G + P G+
Sbjct: 105 --------DGLNYPEGLA-VDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGV 155

Query: 246 AV 247
           AV
Sbjct: 156 AV 157

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A Length = 270

 Score = 68.0 bits (167), Expect = 5e-13
 Identities = 30/162 (18%), Positives = 62/162 (38%), Gaps = 34/162 (20%)

Query: 65  KFESGYTVETVFDGSKLGIEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAG 124
           K  +G   +TV   + L  +P  V V   G + + D+ N+ + ++ +     S  ++V  
Sbjct: 133 KLAAGSKTQTVLPFTGLN-DPDGVAVDNSGNVYVTDTDNNRVVKLEAE----SNNQVVLP 187

Query: 125 SAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNMAIRKISDSGVTTIAGGKWGR 184
             +              +  P G+ VD+ G +Y+ +     + K+     T+      G 
Sbjct: 188 FTD--------------ITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTG- 232

Query: 185 GGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREI 226
               ++ P            V + S  ++ V DRGN  + ++
Sbjct: 233 ----LNTPLA----------VAVDSDRTVYVADRGNDRVVKL 260

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A Length = 270

 Score = 57.6 bits (140), Expect = 2e-09
 Identities = 17/109 (15%), Positives = 38/109 (34%), Gaps = 19/109 (17%)

Query: 65  KFESGYTVETVFDGSKLGIEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAG 124
           K E+    + V   + +   P+ + V   G + + +   + + ++ +     S    V  
Sbjct: 175 KLEAESNNQVVLPFTDIT-APWGIAVDEAGTVYVTEHNTNQVVKLLAG----STTSTVLP 229

Query: 125 SAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNMAIRKISDSG 173
                            +N P  + VD    +Y+AD  N  + K++   
Sbjct: 230 FT--------------GLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLE 264

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Length = 300

 Score = 61.6 bits (150), Expect = 1e-10
 Identities = 26/179 (14%), Positives = 54/179 (30%), Gaps = 35/179 (19%)

Query: 71  TVETVFDGSKLGIEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYS 130
                +D    G  P  + +     L   ++ N+++ RI+++           G  E Y 
Sbjct: 134 GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITNT-----------GKLEEYP 182

Query: 131 GHVDGKPREARMNHPKGLTVDDRGNIYIADTMNMAIRKISDSGVTTIAGGKWGRGGGHVD 190
              +          P G+T  + G ++  + M   I +I+ +G  +              
Sbjct: 183 LPTNA-------AAPVGITSGNDGALWFVEIMGNKIGRITTTGEISEYDI--PTPNARPH 233

Query: 191 GPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQL--HFDDCAYQYGSSFPLGIAV 247
                         +  G +  +   + G   I  I       +   Q  ++ P GI  
Sbjct: 234 A-------------ITAGKNSEIWFTEWGANQIGRITNDNTIQEYQLQTENAEPHGITF 279

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Length = 300

 Score = 58.9 bits (143), Expect = 9e-10
 Identities = 25/176 (14%), Positives = 52/176 (29%), Gaps = 35/176 (19%)

Query: 74  TVFDGSKLGIEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHV 133
             F+      +   + V   G++   ++  + + ++S                    G  
Sbjct: 53  KEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK------------------GGF 94

Query: 134 DGKPREARMNHPKGLTVDDRGNIYIADTMNMAIRKISDSGVTTIAGGKWGRGGGHVDGPS 193
              P     + P G+T    G+I+        I K++  G                    
Sbjct: 95  TEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTADGTIYEYDL------------- 141

Query: 194 EDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQL--HFDDCAYQYGSSFPLGIAV 247
              K S    +  +GS  +L   +  N +I  I      ++      ++ P+GI  
Sbjct: 142 -PNKGSYPAFIT-LGSDNALWFTENQNNSIGRITNTGKLEEYPLPTNAAAPVGITS 195

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Length = 300

 Score = 57.7 bits (140), Expect = 2e-09
 Identities = 18/179 (10%), Positives = 50/179 (27%), Gaps = 35/179 (19%)

Query: 71  TVETVFDGSKLGIEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYS 130
              T +   +    PY +     G++         + ++++                   
Sbjct: 92  GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTA------------------D 133

Query: 131 GHVDGKPREARMNHPKGLTVDDRGNIYIADTMNMAIRKISDSGVTTIAGGKWGRGGGHVD 190
           G +       + ++P  +T+     ++  +  N +I +I+++G                 
Sbjct: 134 GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITNTGKLEEYPL--PTNAAAPV 191

Query: 191 GPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQL--HFDDCAYQYGSSFPLGIAV 247
           G             +  G+  +L  ++     I  I       +      ++ P  I  
Sbjct: 192 G-------------ITSGNDGALWFVEIMGNKIGRITTTGEISEYDIPTPNARPHAITA 237

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Length = 300

 Score = 54.2 bits (131), Expect = 3e-08
 Identities = 21/166 (12%), Positives = 42/166 (25%), Gaps = 37/166 (22%)

Query: 85  PYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNH 144
           PY +     G++       + +  +                    SG +           
Sbjct: 22  PYGITSSEDGKVWFTQHKANKISSLDQ------------------SGRIKEFEVPTPDAK 63

Query: 145 PKGLTVDDRGNIYIADTMNMAIRKIS-DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFD 203
              L V   G+I+  +     I K+S   G T     +         GP         + 
Sbjct: 64  VMCLIVSSLGDIWFTENGANKIGKLSKKGGFTEYPLPQPD------SGP---------YG 108

Query: 204 VVYIGSSCSLLVIDRGNRAIREI--QLHFDDCAYQYGSSFPLGIAV 247
           +   G +  +         I ++       +       S+P  I +
Sbjct: 109 IT-EGLNGDIWFTQLNGDRIGKLTADGTIYEYDLPNKGSYPAFITL 153

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Length = 300

 Score = 43.8 bits (104), Expect = 6e-05
 Identities = 14/121 (11%), Positives = 34/121 (28%), Gaps = 26/121 (21%)

Query: 74  TVFDGSKLGIEPYSVEVLPGGELLILDSANSNLYRISSSLSL--------YSRPKLVAGS 125
             +        P  +     G L  ++   + + RI+++  +         +RP  +   
Sbjct: 179 EEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITTTGEISEYDIPTPNARPHAITAG 238

Query: 126 AEGY----------------SGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNMAIRKI 169
                                  +     +     P G+T    G+++ A      I K+
Sbjct: 239 KNSEIWFTEWGANQIGRITNDNTIQEYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKL 296

Query: 170 S 170
           +
Sbjct: 297 N 297

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* Length = 329

 Score = 61.0 bits (148), Expect = 2e-10
 Identities = 27/168 (16%), Positives = 53/168 (31%), Gaps = 19/168 (11%)

Query: 70  YTVETVFDGSKLGI---EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSA 126
           + VE   D   + +   +   V +     L+I    +      S       + + +    
Sbjct: 8   FHVEEELDWPGVYLLPGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIE 67

Query: 127 EG-------YSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNMAIRKISDSG--VTTI 177
           E         +  +     +     P GL++D  GN ++ D     + K+         +
Sbjct: 68  EDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLL 127

Query: 178 AGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVID-RGNRAIR 224
             G+  + G      S+   F    DV    S+ ++ V D   N  I 
Sbjct: 128 ILGRSMQPG------SDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIV 169

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* Length = 329

 Score = 54.1 bits (130), Expect = 4e-08
 Identities = 15/120 (12%), Positives = 30/120 (25%), Gaps = 13/120 (10%)

Query: 134 DGKPREARMNHPKGLTVDDR-GNIYIADTMNMAIRKISDSGVTTIAGGKWGRGGGHVDGP 192
              PR  + + P  L +      + +AD  N  I+         +   K    G +V   
Sbjct: 187 GSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFA- 245

Query: 193 SEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCAYQYGS-----SFPLGIAV 247
                 S     ++  +       D+       +     +    +         P  I  
Sbjct: 246 -----ISYIPGFLFAVNG-KPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVA 299

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* Length = 329

 Score = 48.3 bits (115), Expect = 3e-06
 Identities = 14/111 (12%), Positives = 31/111 (27%), Gaps = 21/111 (18%)

Query: 69  GYTVETVFDGSKLGIEPYSVEVLPG------GELLILDSANSNLYRISSSLSLYSRPKLV 122
                     +  G   +++  +PG      G+    D      + ++ S          
Sbjct: 227 TKEFVREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFS---------- 276

Query: 123 AGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNMAIRKISDSG 173
           +G        V         + P  +   + G +YI D     + K + + 
Sbjct: 277 SGEIIDVFKPVRKH-----FDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE 322

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Length = 299

 Score = 60.0 bits (146), Expect = 4e-10
 Identities = 30/177 (16%), Positives = 58/177 (32%), Gaps = 37/177 (20%)

Query: 74  TVFDGSKLGIEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHV 133
           T +       +   + +   GE+   ++A + + RI+             G  + Y+   
Sbjct: 48  TEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-----------GIIKEYTLPN 96

Query: 134 DGKPREARMNHPKGLTVDDRGNIYIADTMNMAIRKISDSG-VTTIAGGKWGRGGGHVDGP 192
                    + P G+T    G+I+  +     I +I+D G +        G     +   
Sbjct: 97  PD-------SAPYGITEGPNGDIWFTEMNGNRIGRITDDGKIREYELPNKGSYPSFIT-- 147

Query: 193 SEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCAYQYGS--SFPLGIAV 247
                         +GS  +L   +  N AI  I    D   ++  +  S P+GI  
Sbjct: 148 --------------LGSDNALWFTENQNNAIGRITESGDITEFKIPTPASGPVGITK 190

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Length = 299

 Score = 56.6 bits (137), Expect = 4e-09
 Identities = 22/181 (12%), Positives = 45/181 (24%), Gaps = 43/181 (23%)

Query: 70  YTVETVFDGSKLGIEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGY 129
             +     G      PY + V   G++ I     + +  I+                   
Sbjct: 8   LNLTNQDTG------PYGITVSDKGKVWITQHKANMISCINLD----------------- 44

Query: 130 SGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNMAIRKISDSG-VTTIAGGKWGRGGGH 188
            G +   P          LT+   G ++  +     I +I+  G +              
Sbjct: 45  -GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKKGIIKEYTLPNPD----- 98

Query: 189 VDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQL--HFDDCAYQYGSSFPLGIA 246
              P         + +   G +  +   +     I  I       +       S+P  I 
Sbjct: 99  -SAP---------YGIT-EGPNGDIWFTEMNGNRIGRITDDGKIREYELPNKGSYPSFIT 147

Query: 247 V 247
           +
Sbjct: 148 L 148

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Length = 299

 Score = 53.9 bits (130), Expect = 3e-08
 Identities = 15/145 (10%), Positives = 38/145 (26%), Gaps = 32/145 (22%)

Query: 74  TVFDGSKLGIEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHV 133
           T F        P  +       L  ++   + + RI++S                  G +
Sbjct: 174 TEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITTS------------------GEI 215

Query: 134 DGKPREARMNHPKGLTVDDRGNIYIADTMNMAIRKISDSGVTTIAGGKWGRGGGH---VD 190
                      P  +T     +++  +     I +++ + +      +      H    D
Sbjct: 216 TEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTSNNIIEEYPIQIKSAEPHGICFD 275

Query: 191 GPSEDAKFSNDFDVVYIGSSCSLLV 215
           G           + ++    C  + 
Sbjct: 276 G-----------ETIWFAMECDKIG 289

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 58.7 bits (141), Expect = 3e-09
 Identities = 77/580 (13%), Positives = 167/580 (28%), Gaps = 174/580 (30%)

Query: 1   MGNNVSVMVLALLLLCSGITAAPSSASPAKIVSGFVSNGVSVLMKWLWSLKTTTKTAITG 60
             + VS  +     L S            ++V  FV   + +  K+L S    T+     
Sbjct: 57  SKDAVSGTLRLFWTLLS---------KQEEMVQKFVEEVLRINYKFLMS-PIKTEQRQPS 106

Query: 61  RPMMKFESGYTVETVFDGSKLGIEPYSV--------------EVLPGGEL---------- 96
                +      + +++ +++    Y+V              E+ P   +          
Sbjct: 107 MMTRMYIE--QRDRLYNDNQV-FAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGK 163

Query: 97  --LILDSANS---------NLYRISSS------------LSLYSR--PKLVAGSAEGYSG 131
             + LD   S          ++ ++                L  +  P   + S    + 
Sbjct: 164 TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI 223

Query: 132 HV---DGKPREARM----NHPKGLTV-DDRGNIYIADTMNMAIR-KI----SDSGVTTIA 178
            +     +    R+     +   L V  +  N    +  N  +  KI        VT   
Sbjct: 224 KLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN--LSCKILLTTRFKQVTDFL 281

Query: 179 GGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCAYQYG 238
                    H+         + D          SLL        ++ +     D   +  
Sbjct: 282 SAA---TTTHISLDHHSMTLTPD-------EVKSLL--------LKYLDCRPQDLPREVL 323

Query: 239 SSFPLGIAVLLAAGFFGYMLALLQRRVGTIVSSQN-DHGTVNTSNSASPYQKPLKSVRPP 297
           ++ P  +++             ++  + T  + ++ +   + T   +S     L  + P 
Sbjct: 324 TTNPRRLSI------IA---ESIRDGLATWDNWKHVNCDKLTTIIESS-----LNVLEPA 369

Query: 298 LIPTEEDEGKQEEEGFFGSLAKLF---ANTESSVLEIL---------RGIFPHLRKKTLS 345
                      E    F  L+ +F   A+  + +L ++           +   L K +L 
Sbjct: 370 -----------EYRKMFDRLS-VFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLV 417

Query: 346 NQYP------------SLQKHSTSWPAQESFVIPHEDEPPSIDTRTPTPRKT----YAFM 389
            + P             L+    +  A    ++ H + P + D+    P       Y+ +
Sbjct: 418 EKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHI 477

Query: 390 S---KDAEKIHQLRQSRAFYSGWDGDFQQQKQQHH---HRYQSSTPNT-----YYEQ--- 435
               K+ E   ++   R  +   D  F +QK +H         S  NT     +Y+    
Sbjct: 478 GHHLKNIEHPERMTLFRMVF--LDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYIC 535

Query: 436 SSEKTNEIVFGAIQEQGAKREAVVIKPVNYGDPIYDHQNI 475
            ++   E +  AI +   K E  +I           + ++
Sbjct: 536 DNDPKYERLVNAILDFLPKIEENLI--------CSKYTDL 567

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 Length = 286

 Score = 56.4 bits (137), Expect = 5e-09
 Identities = 30/185 (16%), Positives = 57/185 (30%), Gaps = 46/185 (24%)

Query: 64  MKFESGYTVETVFDGSKLGIEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVA 123
           + F+    V   F  SK    P  V V    E+ I D+    +   +       +     
Sbjct: 145 IIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEG----QYLRQI 200

Query: 124 GSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNMA-IRKISDSG--VTTIAGG 180
           G              E   N+P G+ ++  G I IAD  N   +   +  G  ++ +   
Sbjct: 201 GG-------------EGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQLISALE-- 245

Query: 181 KWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCAYQYGSS 240
                        +          V +    S+++  +  R    + +      Y+Y   
Sbjct: 246 ----SKVKHAQCFD----------VALMDDGSVVLASKDYR----LYI------YRYVQL 281

Query: 241 FPLGI 245
            P+G+
Sbjct: 282 APVGM 286

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 Length = 286

 Score = 55.3 bits (134), Expect = 1e-08
 Identities = 22/111 (19%), Positives = 44/111 (39%), Gaps = 10/111 (9%)

Query: 139 EARMNHPKGLTVDDRGNIYIADTMNMAIRKISDSGVTTIAGGKWGRGGGHVDGPSEDAKF 198
           E +   P G+ V+ + +I +ADT N  I+     G      G+ G+    +  P+  A  
Sbjct: 26  EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVV 85

Query: 199 SNDFDVVYIGSSCS--LLVIDRGNRAIREIQLHFDDCAYQYGSSFPLGIAV 247
            N  D++    S +  + + ++  + +R+                P G+ V
Sbjct: 86  RNSGDIIVTERSPTHQIQIYNQYGQFVRKFGAT--------ILQHPRGVTV 128

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 Length = 286

 Score = 51.8 bits (125), Expect = 1e-07
 Identities = 27/174 (15%), Positives = 61/174 (35%), Gaps = 45/174 (25%)

Query: 83  IEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARM 142
           + P  V V+     +I+   +   ++I     +Y++            G    K     +
Sbjct: 77  LYPNRVAVVRNSGDIIVTERSPT-HQIQ----IYNQ-----------YGQFVRKFGATIL 120

Query: 143 NHPKGLTVDDRGNIYIADTMNMAIRKISDSG--VTTIAGGKWGRGGGHVDGPSEDAKFSN 200
            HP+G+TVD++G I + +   M +     +G  +             H++ P+       
Sbjct: 121 QHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLHKF------GCSKHLEFPN------- 167

Query: 201 DFDVVYIGSSCSLLVIDRGNRAIREIQLHFD---DCAYQYGS----SFPLGIAV 247
               V +     + + D     ++     F+       Q G     ++P+G+ +
Sbjct: 168 ---GVVVNDKQEIFISDNRAHCVK----VFNYEGQYLRQIGGEGITNYPIGVGI 214

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	488
3kya_A	496	Putative phosphatase; structural genomics, joint c	99.88
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	99.83
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	99.81
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.79
3kya_A	496	Putative phosphatase; structural genomics, joint c	99.67
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	99.67
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	99.66
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.62
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.62
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.59
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	99.51
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	99.5
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	99.5
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	99.5
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.46
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	99.46
3v65_B	386	Low-density lipoprotein receptor-related protein;	99.46
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.44
3v65_B	386	Low-density lipoprotein receptor-related protein;	99.44
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	99.44
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	99.43
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	99.42
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.42
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	99.4
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	99.4
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.4
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.4
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	99.38
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	99.38
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	99.38
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.36
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	99.34
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	99.34
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.32
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	99.3
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.25
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	99.22
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.22
2p4o_A	306	Hypothetical protein; putative lactonase, structur	99.18
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.18
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.17
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.16
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	99.12
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	99.11
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	99.11
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.11
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.1
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	99.08
2p4o_A	306	Hypothetical protein; putative lactonase, structur	99.05
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.05
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.02
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.0
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.0
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	98.98
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	98.89
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	98.86
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.86
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	98.82
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	98.82
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	98.81
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	98.79
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	98.78
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	98.71
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	98.68
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.64
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	98.64
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	98.57
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	98.54
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.53
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	98.5
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	98.49
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	98.47
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	98.46
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	98.41
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	98.36
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	98.33
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	98.29
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	98.26
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	98.24
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	98.22
4a9v_A	592	PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona	98.15
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.04
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	98.02
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	97.96
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	97.95
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	97.87
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	97.85
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	97.83
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	97.79
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	97.78
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	97.78
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	97.77
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	97.76
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	97.73
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	97.72
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	97.66
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	97.65
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	97.64
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	97.62
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	97.54
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	97.51
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	97.48
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	97.4
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	97.33
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	97.28
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	97.27
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	97.25
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	97.1
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.07
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	97.04
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	97.02
3zwu_A	592	Alkaline phosphatase PHOX; hydrolase, beta-propell	97.02
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	96.99
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	96.89
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	96.87
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	96.83
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	96.76
4a9v_A	592	PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona	96.73
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	96.66
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	96.64
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	96.54
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	96.53
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	96.51
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	96.5
2ece_A	462	462AA long hypothetical selenium-binding protein;	96.23
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	96.2
2ece_A	462	462AA long hypothetical selenium-binding protein;	96.19
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	96.14
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	96.13
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	95.98
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	95.91
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	95.89
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	95.89
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	95.49
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	95.39
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	95.38
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	95.28
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	95.26
4a2l_A	795	BT_4663, two-component system sensor histidine kin	95.22
3ow8_A	321	WD repeat-containing protein 61; structural genomi	95.05
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	94.72
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	94.71
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	94.62
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	94.62
3ow8_A	321	WD repeat-containing protein 61; structural genomi	94.58
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	94.34
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	94.26
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	94.23
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	94.21
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	94.03
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	94.02
3v9f_A	781	Two-component system sensor histidine kinase/RESP	93.96
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	93.92
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	93.74
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	93.56
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	93.49
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	93.42
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	93.36
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	93.22
3v9f_A	781	Two-component system sensor histidine kinase/RESP	93.17
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	93.08
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	93.05
3zwu_A	592	Alkaline phosphatase PHOX; hydrolase, beta-propell	93.02
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	92.97
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	92.88
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	92.88
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	92.81
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	92.76
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	92.66
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	92.64
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	92.39
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	92.36
4a2l_A	795	BT_4663, two-component system sensor histidine kin	92.25
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	92.07
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	92.03
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	91.94
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	91.83
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	91.78
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	91.66
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	91.66
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	91.53
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	91.46
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	91.43
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	91.37
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	91.15
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	91.12
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	91.11
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	91.07
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	90.7
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	90.65
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	90.55
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	90.52
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	90.43
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	90.34
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	90.28
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	90.17
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	90.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	89.91
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	89.69
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	89.62
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	89.49
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	89.43
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	89.4
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	89.32
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	89.24
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	89.01
2pm7_B	297	Protein transport protein SEC13, protein transport	88.58
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	88.46
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	88.43
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	88.2
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	88.03
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	87.52
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	87.48
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	87.4
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	87.36
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	87.31
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	87.2
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	87.19
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	86.92
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	86.67
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	86.49
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	86.42
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	86.15
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	85.92
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	85.34
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	85.32
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	85.13
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	85.11
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	84.94
3jrp_A	379	Fusion protein of protein transport protein SEC13	84.66
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	84.57
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	84.35
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	84.17
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	83.94
3ott_A	758	Two-component system sensor histidine kinase; beta	83.4
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	83.02
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	82.98
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	82.78
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	82.22
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	82.1
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	82.03
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	81.86
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	81.25
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	80.91
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	80.86
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	80.53
3jro_A	753	Fusion protein of protein transport protein SEC13	80.05
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	80.02

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=99.88  E-value=3e-22  Score=214.62  Aligned_cols=151  Identities=26%  Similarity=0.324  Sum_probs=125.3

Q ss_pred             CCceEEEEccCCc-EEEEECCCCeEEEEeCCCCc--ccccEEEecCCCCccccCCCcccccccCCcc-eEEEc-------
Q 011333           83 IEPYSVEVLPGGE-LLILDSANSNLYRISSSLSL--YSRPKLVAGSAEGYSGHVDGKPREARMNHPK-GLTVD-------  151 (488)
Q Consensus        83 ~~P~GIaVd~dG~-LYVaD~~n~rI~kid~~g~~--~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~-GIAvD-------  151 (488)
                      ..|.+|+++++|+ |||+|..+|+|++++.++..  +...++++|.. |..|+.||.+..++|+.|. |+++|       
T Consensus       310 ~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~-g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~  388 (496)
T 3kya_A          310 SWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGY-KQSGYRDDVGTEARMNNPCQGVFVKNPDYTGE  388 (496)
T ss_dssp             SCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBT-TBCCCBCCBGGGCBCSSEEEEEEEECTTCCSS
T ss_pred             CCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCC-CCCcccCCcccccccCCCeEEEEEcccccccc
Confidence            3689999999998 99999999999998876422  12237888863 5677779999999999999 89998       


Q ss_pred             CCCcEEEEECCCCEEEEEc-CCCcEEEeCCcc------CCCCCCCCC-CcccccCCCCCeeEEECCC-CeEEEEECCCCe
Q 011333          152 DRGNIYIADTMNMAIRKIS-DSGVTTIAGGKW------GRGGGHVDG-PSEDAKFSNDFDVVYIGSS-CSLLVIDRGNRA  222 (488)
Q Consensus       152 ~dG~LYVAD~~N~rIrkid-~ggVttIaGg~~------g~~~g~~dG-~~~~a~f~~P~gIa~vd~~-G~LYVaD~gN~r  222 (488)
                      .+|+|||||+.|||||+|+ +|.++|++|...      +..+|+.|| ++.+++|+.|.+|+ ++++ |+|||+|++|+|
T Consensus       389 ~~g~lyVaD~~N~rIr~i~~~G~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIa-vd~~~g~lyVaD~~N~r  467 (496)
T 3kya_A          389 EEYDFYFVDRLNFCVRKVTPEGIVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLV-YDDVKEMFYVHDQVGHT  467 (496)
T ss_dssp             CCEEEEEEEGGGTEEEEECTTCBEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEE-EETTTTEEEEEETTTTE
T ss_pred             CCCeEEEEECCCCEEEEEeCCCCEEEEecccccccccCccccccCCCCchhhhhcCCCcEEE-EECCCCEEEEEeCCCCE
Confidence            6899999999999999999 677999998532      122366787 88999999999999 6765 999999999999


Q ss_pred             EEEEEcCCCceEE
Q 011333          223 IREIQLHFDDCAY  235 (488)
Q Consensus       223 IrkI~~~g~~~~~  235 (488)
                      ||+|++.++.|.-
T Consensus       468 Irki~~~~~~~~~  480 (496)
T 3kya_A          468 IRTISMEQEENVA  480 (496)
T ss_dssp             EEEEEECCCC---
T ss_pred             EEEEECCCCcccc
Confidence            9999999877753

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=99.83  E-value=5.4e-20  Score=193.33  Aligned_cols=144  Identities=24%  Similarity=0.369  Sum_probs=121.8

Q ss_pred             CceEEEEccCCc-EEEEECCCCeEEEEeCC--CCcccccEEEecCCCCccccCCCcccccccCCcceEEE---------c
Q 011333           84 EPYSVEVLPGGE-LLILDSANSNLYRISSS--LSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTV---------D  151 (488)
Q Consensus        84 ~P~GIaVd~dG~-LYVaD~~n~rI~kid~~--g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAv---------D  151 (488)
                      .+.+|+++++|+ |||+|..+++|++++.+  ++.+..+.+++|.. +..|..||.+..++|+.|.||++         |
T Consensus       274 ~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~-g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd  352 (433)
T 4hw6_A          274 SNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQH-SSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEE  352 (433)
T ss_dssp             SCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECT-TCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSS
T ss_pred             CcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecC-CCCccCCCcccceEEcCCccEEEEccccccccC
Confidence            467899999998 99999999999999876  33334567888863 55667788888999999999999         9


Q ss_pred             CCCcEEEEECCCCEEEEEc-CCCcEEEeCCccCCCCCCCCC-CcccccCCCCCeeEEEC-CCCeEEEEECCCCeEEEEEc
Q 011333          152 DRGNIYIADTMNMAIRKIS-DSGVTTIAGGKWGRGGGHVDG-PSEDAKFSNDFDVVYIG-SSCSLLVIDRGNRAIREIQL  228 (488)
Q Consensus       152 ~dG~LYVAD~~N~rIrkid-~ggVttIaGg~~g~~~g~~dG-~~~~a~f~~P~gIa~vd-~~G~LYVaD~gN~rIrkI~~  228 (488)
                      .+|+|||||+.|++|++++ +|.+++++|.......|+.+| .+.+++|+.|.+|+ ++ ++|+|||+|++|+|||+|++
T Consensus       353 ~~g~lyvaD~~n~~I~~~~~~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~gia-vd~~~g~lyVaD~~n~rIr~i~~  431 (433)
T 4hw6_A          353 DEYDFYFCDRDSHTVRVLTPEGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIA-YDMKRKCFYIGDCDNHRVRKIAP  431 (433)
T ss_dssp             CCEEEEEEETTTTEEEEECTTSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEE-EETTTTEEEEEEGGGTEEEEEEE
T ss_pred             CCCcEEEEECCCCEEEEECCCCCEEEEEeCCCCCccccCCCccccccEeCCCcEEE-EECCCCEEEEEeCCCCEEEEEec
Confidence            9999999999999999999 666999998643222456777 78889999999999 56 89999999999999999987


Q ss_pred             C
Q 011333          229 H  229 (488)
Q Consensus       229 ~  229 (488)
                      +
T Consensus       432 e  432 (433)
T 4hw6_A          432 E  432 (433)
T ss_dssp             C
T ss_pred             C
Confidence            5

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=99.81  E-value=4.7e-19  Score=185.73  Aligned_cols=144  Identities=29%  Similarity=0.451  Sum_probs=120.0

Q ss_pred             CCceEEEEccCCc-EEEEECCCCeEEEEeCCCC--cccccEEEecCCCCccccCCCcccccccCCcc-eEEE--------
Q 011333           83 IEPYSVEVLPGGE-LLILDSANSNLYRISSSLS--LYSRPKLVAGSAEGYSGHVDGKPREARMNHPK-GLTV--------  150 (488)
Q Consensus        83 ~~P~GIaVd~dG~-LYVaD~~n~rI~kid~~g~--~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~-GIAv--------  150 (488)
                      ..|.+|+++++|+ |||+|..+++|++++.++.  .+..+.+++|.. |..|..+|.+..++|+.|. |+++        
T Consensus       270 ~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~-g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~  348 (430)
T 3tc9_A          270 GWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQ-GAKDWVDGVGKKARMHAPRQGTFVKNPAYKGS  348 (430)
T ss_dssp             SCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECT-TCBCCBCEEGGGCBBSSEEEEEEEECGGGTTS
T ss_pred             CcceeEEEcCCCCEEEEEECCCCEEEEEeCCcccccccceEEEeccC-CCCCCCCCCCcceEeCCCcceEEEcccccccc
Confidence            4799999999998 9999999999999988742  234467888863 5566668888889999999 8999        


Q ss_pred             cCCCcEEEEECCCCEEEEEc-CCCcEEEeCCcc-CCCCCCCCC-CcccccCCCCCeeEEECC-CCeEEEEECCCCeEEEE
Q 011333          151 DDRGNIYIADTMNMAIRKIS-DSGVTTIAGGKW-GRGGGHVDG-PSEDAKFSNDFDVVYIGS-SCSLLVIDRGNRAIREI  226 (488)
Q Consensus       151 D~dG~LYVAD~~N~rIrkid-~ggVttIaGg~~-g~~~g~~dG-~~~~a~f~~P~gIa~vd~-~G~LYVaD~gN~rIrkI  226 (488)
                      |++|+|||||+.|++|++++ +|.+++++|... +. .|+.|| .+.+++|+.|.+|+ +++ +|+|||+|++|++||+|
T Consensus       349 D~~g~lyvaD~~n~~I~~i~~~G~v~~~~g~g~~~~-~G~~dG~~~~~~~~~~P~gia-vd~~~g~lyVaD~~n~rIr~i  426 (430)
T 3tc9_A          349 SDEYDFYFCDRENHCIRILTPQGRVTTFAGRGSNGT-SGYNDGDLRQEARFNHPEGIV-YDEERECFFIGDRENRRIRKI  426 (430)
T ss_dssp             SCCEEEEEEEGGGTEEEEECTTSEEEEEEECCTTSS-SSCBCEETTTTCBCSSEEEEE-EETTTTEEEEEEGGGTEEEEE
T ss_pred             CCCCeEEEEECCCcEEEEECCCCcEEEEEeCCCCCC-CcccCCCchhhcEeCCCcEEE-EECCCCEEEEEECCCCeEEEE
Confidence            46799999999999999999 666899987532 22 355577 78889999999999 566 79999999999999999


Q ss_pred             EcC
Q 011333          227 QLH  229 (488)
Q Consensus       227 ~~~  229 (488)
                      +++
T Consensus       427 ~~e  429 (430)
T 3tc9_A          427 GYE  429 (430)
T ss_dssp             EEC
T ss_pred             ccC
Confidence            875

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.79  E-value=1e-18  Score=181.54  Aligned_cols=138  Identities=26%  Similarity=0.391  Sum_probs=118.8

Q ss_pred             Cce-EEEEcc-CCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEEC
Q 011333           84 EPY-SVEVLP-GGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADT  161 (488)
Q Consensus        84 ~P~-GIaVd~-dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~  161 (488)
                      +|. +|++++ +|.|||+|..+++|++++.++    .+.+++|.. +..|..+|.+..++|+.|.||++|++|+|||||+
T Consensus       267 ~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g----~~~~~~g~~-~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~  341 (409)
T 3hrp_A          267 NPGPYLIYYFVDSNFYMSDQNLSSVYKITPDG----ECEWFCGSA-TQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDG  341 (409)
T ss_dssp             SSCCEEEEETTTTEEEEEETTTTEEEEECTTC----CEEEEEECT-TCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEET
T ss_pred             CccccEEEeCCCCEEEEEeCCCCEEEEEecCC----CEEEEEeCC-CCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeC
Confidence            577 999999 689999999999999999985    577888863 3456668888889999999999999999999999


Q ss_pred             -CCCEEEEEc-C-CCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcC
Q 011333          162 -MNMAIRKIS-D-SGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLH  229 (488)
Q Consensus       162 -~N~rIrkid-~-ggVttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~  229 (488)
                       .|++|++++ . +.+++++|....  .|+.+|.+..++|+.|.+|+ ++++|+|||+|++|++|++|+++
T Consensus       342 ~~~~~I~~~~~~~G~v~~~~g~~~~--~g~~~g~~~~~~~~~P~gia-vd~~g~lyVad~~n~~Ir~i~~e  409 (409)
T 3hrp_A          342 FKGYCLRKLDILDGYVSTVAGQVDV--ASQIDGTPLEATFNYPYDIC-YDGEGGYWIAEAWGKAIRKYAVE  409 (409)
T ss_dssp             TTTCEEEEEETTTTEEEEEEECTTC--BSCCCBSTTTCCBSSEEEEE-ECSSSEEEEEESTTCEEEEEEEC
T ss_pred             CCCCEEEEEECCCCEEEEEeCCCCC--CCcCCCChhceEeCCceEEE-EcCCCCEEEEECCCCeEEEEEeC
Confidence             999999999 4 558888875322  45667888889999999999 78889999999999999999863

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=99.67  E-value=6.1e-16  Score=165.79  Aligned_cols=132  Identities=17%  Similarity=0.177  Sum_probs=101.9

Q ss_pred             CCceEEEEcc-CCcEEEEECCCCeEEEEeCC-------CCcccc---------cEEEecCCCCccccCCCcccccccCCc
Q 011333           83 IEPYSVEVLP-GGELLILDSANSNLYRISSS-------LSLYSR---------PKLVAGSAEGYSGHVDGKPREARMNHP  145 (488)
Q Consensus        83 ~~P~GIaVd~-dG~LYVaD~~n~rI~kid~~-------g~~~g~---------i~tvaG~~~G~~G~~dG~a~~a~Ln~P  145 (488)
                      .+|+++++++ +|.||++|..+++|++++++       ++....         ...++-.              ..-..|
T Consensus       247 ~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~--------------~~~~~p  312 (496)
T 3kya_A          247 KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTI--------------ADPSWE  312 (496)
T ss_dssp             SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEEC--------------SSSSCC
T ss_pred             CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEec--------------CCCCCc
Confidence            5799999999 78899999999999999986       422100         0011100              012468


Q ss_pred             ceEEEcCCCc-EEEEECCCCEEEEEc-CCC---c---EEEeCCccCCCCCCCCCCcccccCCCCC-eeEEEC-------C
Q 011333          146 KGLTVDDRGN-IYIADTMNMAIRKIS-DSG---V---TTIAGGKWGRGGGHVDGPSEDAKFSNDF-DVVYIG-------S  209 (488)
Q Consensus       146 ~GIAvD~dG~-LYVAD~~N~rIrkid-~gg---V---ttIaGg~~g~~~g~~dG~~~~a~f~~P~-gIa~vd-------~  209 (488)
                      .+||++++|+ |||||+.+|+|++++ ++.   +   ++++|.. +. .|+.||.+..++|+.|. +++ ++       .
T Consensus       313 ~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~-g~-~G~~DG~~~~a~f~~P~~gv~-vd~~~~~~~~  389 (496)
T 3kya_A          313 FQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGY-KQ-SGYRDDVGTEARMNNPCQGVF-VKNPDYTGEE  389 (496)
T ss_dssp             EEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBT-TB-CCCBCCBGGGCBCSSEEEEEE-EECTTCCSSC
T ss_pred             eEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCC-CC-CcccCCcccccccCCCeEEEE-EccccccccC
Confidence            9999999998 899999999999988 432   2   6788742 22 46668999999999999 666 66       6


Q ss_pred             CCeEEEEECCCCeEEEEEcCCC
Q 011333          210 SCSLLVIDRGNRAIREIQLHFD  231 (488)
Q Consensus       210 ~G~LYVaD~gN~rIrkI~~~g~  231 (488)
                      +|+|||||++|||||+|+++|.
T Consensus       390 ~g~lyVaD~~N~rIr~i~~~G~  411 (496)
T 3kya_A          390 EYDFYFVDRLNFCVRKVTPEGI  411 (496)
T ss_dssp             CEEEEEEEGGGTEEEEECTTCB
T ss_pred             CCeEEEEECCCCEEEEEeCCCC
Confidence            8999999999999999998874

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=99.67  E-value=1.1e-15  Score=160.07  Aligned_cols=148  Identities=19%  Similarity=0.219  Sum_probs=114.0

Q ss_pred             CCCceEEEEcc-CCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCc-EEEE
Q 011333           82 GIEPYSVEVLP-GGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-IYIA  159 (488)
Q Consensus        82 l~~P~GIaVd~-dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~-LYVA  159 (488)
                      +..|+++++++ +|.|||+|..+++|+++++++.   ....+....              ....|++|++|++|+ |||+
T Consensus       225 ~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~---~~~~~~~~~--------------~~~~P~gia~~pdG~~lyv~  287 (430)
T 3tc9_A          225 GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQ---ETTPLFTIQ--------------DSGWEFHIQFHPSGNYAYIV  287 (430)
T ss_dssp             CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTT---EEEEEEECS--------------SSSCCEEEEECTTSSEEEEE
T ss_pred             CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCC---cEEEEEEcC--------------CCCcceeEEEcCCCCEEEEE
Confidence            56899999999 8999999999999999999863   332332210              034699999999998 9999


Q ss_pred             ECCCCEEEEEc-CCC------cEEEeCCccCCCCCCCCCCcccccCCCCC-eeEEE--------CCCCeEEEEECCCCeE
Q 011333          160 DTMNMAIRKIS-DSG------VTTIAGGKWGRGGGHVDGPSEDAKFSNDF-DVVYI--------GSSCSLLVIDRGNRAI  223 (488)
Q Consensus       160 D~~N~rIrkid-~gg------VttIaGg~~g~~~g~~dG~~~~a~f~~P~-gIa~v--------d~~G~LYVaD~gN~rI  223 (488)
                      |..+++|++++ ++.      +.+++|.. +. .|+.+|....++|+.|. +++ +        |.+|+|||+|++|++|
T Consensus       288 d~~~~~I~~~~~d~~~~~~~~~~~~ag~~-g~-~g~~dg~~~~a~~~~P~~gv~-v~~~~y~~~D~~g~lyvaD~~n~~I  364 (430)
T 3tc9_A          288 VVNQHYILRSDYDWKTKRLTTPYIVCGQQ-GA-KDWVDGVGKKARMHAPRQGTF-VKNPAYKGSSDEYDFYFCDRENHCI  364 (430)
T ss_dssp             ETTTTEEEEEEEETTTTEECCCEEEEECT-TC-BCCBCEEGGGCBBSSEEEEEE-EECGGGTTSSCCEEEEEEEGGGTEE
T ss_pred             ECCCCEEEEEeCCcccccccceEEEeccC-CC-CCCCCCCCcceEeCCCcceEE-EccccccccCCCCeEEEEECCCcEE
Confidence            99999999998 432      56777642 11 35567777888999999 787 5        5679999999999999


Q ss_pred             EEEEcCCCceEEec-----------c-------CCCcceEEEEe
Q 011333          224 REIQLHFDDCAYQY-----------G-------SSFPLGIAVLL  249 (488)
Q Consensus       224 rkI~~~g~~~~~~~-----------~-------~g~P~GIav~~  249 (488)
                      ++|+.+|.......           +       +..|.||+++.
T Consensus       365 ~~i~~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~  408 (430)
T 3tc9_A          365 RILTPQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDE  408 (430)
T ss_dssp             EEECTTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEET
T ss_pred             EEECCCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEEC
Confidence            99998774333221           1       34799999985

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=99.66  E-value=1.3e-15  Score=159.85  Aligned_cols=148  Identities=14%  Similarity=0.155  Sum_probs=113.4

Q ss_pred             CCCceEEEEcc-CCcEEEEECCCCeEEEEeCCCCccccc-EEEecCCCCccccCCCcccccccCCcceEEEcCCCc-EEE
Q 011333           82 GIEPYSVEVLP-GGELLILDSANSNLYRISSSLSLYSRP-KLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-IYI  158 (488)
Q Consensus        82 l~~P~GIaVd~-dG~LYVaD~~n~rI~kid~~g~~~g~i-~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~-LYV  158 (488)
                      +..|.+|++++ +|+|||+|..+++|+++++++   +.+ ..+...  +       .     ...+.+|++|++|+ |||
T Consensus       227 ~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~---g~~~~~~~~~--~-------~-----~~~~~~ia~dpdG~~LYv  289 (433)
T 4hw6_A          227 ARGAKTCAVHPQNGKIYYTRYHHAMISSYDPAT---GTLTEEEVMM--D-------T-----KGSNFHIVWHPTGDWAYI  289 (433)
T ss_dssp             CSSBCCCEECTTTCCEEECBTTCSEEEEECTTT---CCEEEEEEEC--S-------C-----CSSCEEEEECTTSSEEEE
T ss_pred             cCCCCEEEEeCCCCeEEEEECCCCEEEEEECCC---CeEEEEEecc--C-------C-----CCCcccEEEeCCCCEEEE
Confidence            56899999999 899999999999999999984   333 333322  1       0     22356899999998 999


Q ss_pred             EECCCCEEEEEc-C---CC---cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEE--------CCCCeEEEEECCCCeE
Q 011333          159 ADTMNMAIRKIS-D---SG---VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYI--------GSSCSLLVIDRGNRAI  223 (488)
Q Consensus       159 AD~~N~rIrkid-~---gg---VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~v--------d~~G~LYVaD~gN~rI  223 (488)
                      +|..+++|++++ +   +.   +.+++|.. +. .|+.+|....++|+.|.+|+++        +.+|+|||+|++|++|
T Consensus       290 ad~~~~~I~~~~~d~~~~~~~~~~~~ag~~-g~-~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I  367 (433)
T 4hw6_A          290 IYNGKHCIYRVDYNRETGKLAVPYIVCGQH-SS-PGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTV  367 (433)
T ss_dssp             EETTTTEEEEEEBCTTTCCBCCCEEEEECT-TC-CCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEE
T ss_pred             EeCCCCEEEEEeCCCCCcccCcEEEEEecC-CC-CccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEE
Confidence            999999999988 3   22   35777642 11 4566888889999999999932        8999999999999999


Q ss_pred             EEEEcCCCceEEe-----------c-------cCCCcceEEEE
Q 011333          224 REIQLHFDDCAYQ-----------Y-------GSSFPLGIAVL  248 (488)
Q Consensus       224 rkI~~~g~~~~~~-----------~-------~~g~P~GIav~  248 (488)
                      ++|+++|......           .       .+..|.|||++
T Consensus       368 ~~~~~~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd  410 (433)
T 4hw6_A          368 RVLTPEGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYD  410 (433)
T ss_dssp             EEECTTSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEE
T ss_pred             EEECCCCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEE
Confidence            9999877433221           1       13458889888

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.62  E-value=1.7e-14  Score=143.36  Aligned_cols=140  Identities=17%  Similarity=0.230  Sum_probs=104.3

Q ss_pred             CCCCCCceEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcC-CCcEE
Q 011333           79 SKLGIEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDD-RGNIY  157 (488)
Q Consensus        79 ~~~l~~P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~-dG~LY  157 (488)
                      ...+..|.+|+++++|+|||+|..+++|+++++++.. ..+..+...  +..|..     ...|+.|++|++|+ +|+||
T Consensus        87 ~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~-~~~~~~~~~--~~~g~~-----~~~~~~P~~ia~~~~~g~ly  158 (329)
T 3fvz_A           87 KNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKE-GPLLILGRS--MQPGSD-----QNHFCQPTDVAVEPSTGAVF  158 (329)
T ss_dssp             TTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSS-CCSEEESBT--TBCCCS-----TTCCSSEEEEEECTTTCCEE
T ss_pred             CCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCe-EEEEEeccc--CCCCCC-----ccccCCCcEEEEeCCCCeEE
Confidence            3456789999999999999999999999999998631 133444222  223321     24589999999999 89999


Q ss_pred             EEEC-CCCEEEEEc-CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCC-CeEEEEECCCCeEEEEEcC-CCce
Q 011333          158 IADT-MNMAIRKIS-DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSS-CSLLVIDRGNRAIREIQLH-FDDC  233 (488)
Q Consensus       158 VAD~-~N~rIrkid-~ggVttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~-G~LYVaD~gN~rIrkI~~~-g~~~  233 (488)
                      |+|. .+++|++++ ++.+....+... .     .+.+....|..|.+|+ ++++ |+|||+|.++++|+++++. |...
T Consensus       159 v~d~~~~~~I~~~~~~g~~~~~~~~~g-~-----~~~~~~~~~~~p~gia-~d~~~g~l~v~d~~~~~I~~~~~~~G~~~  231 (329)
T 3fvz_A          159 VSDGYCNSRIVQFSPSGKFVTQWGEES-S-----GSSPRPGQFSVPHSLA-LVPHLDQLCVADRENGRIQCFKTDTKEFV  231 (329)
T ss_dssp             EEECSSCCEEEEECTTSCEEEEECEEC-C-----SSSCCTTEESCEEEEE-EETTTTEEEEEETTTTEEEEEETTTCCEE
T ss_pred             EEeCCCCCeEEEEcCCCCEEEEeccCC-C-----CCCCCCcccCCCcEEE-EECCCCEEEEEECCCCEEEEEECCCCcEE
Confidence            9997 799999999 566544443211 0     1122345789999999 5665 9999999999999999998 5433

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.62  E-value=1.1e-14  Score=151.29  Aligned_cols=153  Identities=19%  Similarity=0.175  Sum_probs=116.6

Q ss_pred             CCCCceEEEEcc-CCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcc-eEEEcC-CCcEE
Q 011333           81 LGIEPYSVEVLP-GGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPK-GLTVDD-RGNIY  157 (488)
Q Consensus        81 ~l~~P~GIaVd~-dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~-GIAvD~-dG~LY  157 (488)
                      .+..|+++++++ +|.||++|. +++|++++.++   +...++++.  +..|. .       -..|. +|++++ +|+||
T Consensus       217 ~~~~p~~iav~p~~g~lyv~d~-~~~I~~~d~~~---~~~~~~~~~--~~~g~-~-------~~~P~~~ia~~p~~g~ly  282 (409)
T 3hrp_A          217 FSGKIGAVALDETEEWLYFVDS-NKNFGRFNVKT---QEVTLIKQL--ELSGS-L-------GTNPGPYLIYYFVDSNFY  282 (409)
T ss_dssp             SCSCCCBCEECTTSSEEEEECT-TCEEEEEETTT---CCEEEEEEC--CCCSC-C-------CCSSCCEEEEETTTTEEE
T ss_pred             hcCCcEEEEEeCCCCeEEEEEC-CCcEEEEECCC---CCEEEEecc--cccCC-C-------CCCccccEEEeCCCCEEE
Confidence            456899999999 899999886 78999999986   344555443  11111 0       12377 999999 68999


Q ss_pred             EEECCCCEEEEEc-CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEEC-CCCeEEEEE-cCCCceE
Q 011333          158 IADTMNMAIRKIS-DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDR-GNRAIREIQ-LHFDDCA  234 (488)
Q Consensus       158 VAD~~N~rIrkid-~ggVttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~-gN~rIrkI~-~~g~~~~  234 (488)
                      |+|..+++|++++ ++.+.+++|....  .|..+|....++|+.|.+|+ ++++|+|||+|+ +|++|++|+ ..+....
T Consensus       283 v~d~~~~~I~~~~~~g~~~~~~g~~~~--~g~~dg~~~~~~~~~P~gia-~d~dG~lyvad~~~~~~I~~~~~~~G~v~~  359 (409)
T 3hrp_A          283 MSDQNLSSVYKITPDGECEWFCGSATQ--KTVQDGLREEALFAQPNGMT-VDEDGNFYIVDGFKGYCLRKLDILDGYVST  359 (409)
T ss_dssp             EEETTTTEEEEECTTCCEEEEEECTTC--CSCBCEEGGGCBCSSEEEEE-ECTTCCEEEEETTTTCEEEEEETTTTEEEE
T ss_pred             EEeCCCCEEEEEecCCCEEEEEeCCCC--CCcCCCcccccEeCCCeEEE-EeCCCCEEEEeCCCCCEEEEEECCCCEEEE
Confidence            9999999999999 6778888875321  45677788889999999999 799999999999 999999999 4443222


Q ss_pred             Eecc---------------CCCcceEEEEec
Q 011333          235 YQYG---------------SSFPLGIAVLLA  250 (488)
Q Consensus       235 ~~~~---------------~g~P~GIav~~g  250 (488)
                      ....               +..|.||+++..
T Consensus       360 ~~g~~~~~g~~~g~~~~~~~~~P~giavd~~  390 (409)
T 3hrp_A          360 VAGQVDVASQIDGTPLEATFNYPYDICYDGE  390 (409)
T ss_dssp             EEECTTCBSCCCBSTTTCCBSSEEEEEECSS
T ss_pred             EeCCCCCCCcCCCChhceEeCCceEEEEcCC
Confidence            2111               357999999854

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.59  E-value=4.6e-14  Score=140.29  Aligned_cols=145  Identities=18%  Similarity=0.224  Sum_probs=108.3

Q ss_pred             CCCCCceEEEEccCCcEEEEECCCC------------------------eEEEEeCCCCcccccEEEecCCCCccccCCC
Q 011333           80 KLGIEPYSVEVLPGGELLILDSANS------------------------NLYRISSSLSLYSRPKLVAGSAEGYSGHVDG  135 (488)
Q Consensus        80 ~~l~~P~GIaVd~dG~LYVaD~~n~------------------------rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG  135 (488)
                      ..+..|.+|+++++|+|||++..++                        +|++++.++   +++....+.          
T Consensus        21 ~~l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~---g~~~~~~~~----------   87 (329)
T 3fvz_A           21 LLPGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNN---AEILQSSGK----------   87 (329)
T ss_dssp             CCCSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTT---CCEEEEECT----------
T ss_pred             eecCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCC---CeEEeccCC----------
Confidence            3466899999999999999999884                        688898864   344333332          


Q ss_pred             cccccccCCcceEEEcCCCcEEEEECCCCEEEEEc-CCC---cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECC-C
Q 011333          136 KPREARMNHPKGLTVDDRGNIYIADTMNMAIRKIS-DSG---VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGS-S  210 (488)
Q Consensus       136 ~a~~a~Ln~P~GIAvD~dG~LYVAD~~N~rIrkid-~gg---VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~-~  210 (488)
                          ..|+.|.||++|++|+|||+|..+++|++++ ++.   +.++...  +. .|.     ....|..|.+|+ +++ +
T Consensus        88 ----~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~--~~-~g~-----~~~~~~~P~~ia-~~~~~  154 (329)
T 3fvz_A           88 ----NLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRS--MQ-PGS-----DQNHFCQPTDVA-VEPST  154 (329)
T ss_dssp             ----TTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBT--TB-CCC-----STTCCSSEEEEE-ECTTT
T ss_pred             ----CccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEeccc--CC-CCC-----CccccCCCcEEE-EeCCC
Confidence                2378999999999999999999999999999 554   3444321  10 111     134688999999 676 8


Q ss_pred             CeEEEEEC-CCCeEEEEEcCCCceEEec-----------cCCCcceEEEEec
Q 011333          211 CSLLVIDR-GNRAIREIQLHFDDCAYQY-----------GSSFPLGIAVLLA  250 (488)
Q Consensus       211 G~LYVaD~-gN~rIrkI~~~g~~~~~~~-----------~~g~P~GIav~~g  250 (488)
                      |+|||+|. ++++|++++.+|.......           ....|.||+++..
T Consensus       155 g~lyv~d~~~~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~  206 (329)
T 3fvz_A          155 GAVFVSDGYCNSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPH  206 (329)
T ss_dssp             CCEEEEECSSCCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETT
T ss_pred             CeEEEEeCCCCCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECC
Confidence            99999997 8999999998876554432           1235999999843

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=99.51  E-value=1.2e-12  Score=130.84  Aligned_cols=133  Identities=16%  Similarity=0.100  Sum_probs=103.8

Q ss_pred             CCCceEEEEcc-CCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcC-CCcEEEE
Q 011333           82 GIEPYSVEVLP-GGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDD-RGNIYIA  159 (488)
Q Consensus        82 l~~P~GIaVd~-dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~-dG~LYVA  159 (488)
                      +..|.||++|. +|+||++|..+++|.+++.++.   ...+++..               .+..|+||++|+ +|.||++
T Consensus        76 ~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~---~~~~~~~~---------------~~~~P~~iavdp~~g~ly~~  137 (316)
T 1ijq_A           76 IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV---KRKTLFRE---------------NGSKPRAIVVDPVHGFMYWT  137 (316)
T ss_dssp             CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS---SEEEEEEC---------------TTCCEEEEEEETTTTEEEEE
T ss_pred             CCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCC---ceEEEEEC---------------CCCCcceEEeCCCCCEEEEE
Confidence            45899999996 7889999999999999999863   23333321               267899999997 7789999


Q ss_pred             ECCC-CEEEEEc-CCCcEE-EeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCceEEe
Q 011333          160 DTMN-MAIRKIS-DSGVTT-IAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCAYQ  236 (488)
Q Consensus       160 D~~N-~rIrkid-~ggVtt-IaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g~~~~~~  236 (488)
                      |..+ ++|.+++ +|.... +...                .+..|++|++....+.||++|+.+++|.+++++|......
T Consensus       138 d~~~~~~I~~~~~dG~~~~~~~~~----------------~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~  201 (316)
T 1ijq_A          138 DWGTPAKIKKGGLNGVDIYSLVTE----------------NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTI  201 (316)
T ss_dssp             ECSSSCEEEEEETTSCCEEEEECS----------------SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred             ccCCCCeEEEEcCCCCCeEEEEEC----------------CCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEE
Confidence            9986 8999999 665433 3321                3678999995446889999999999999999998644332


Q ss_pred             ----ccCCCcceEEEE
Q 011333          237 ----YGSSFPLGIAVL  248 (488)
Q Consensus       237 ----~~~g~P~GIav~  248 (488)
                          .....|.||+++
T Consensus       202 ~~~~~~~~~P~giav~  217 (316)
T 1ijq_A          202 LEDEKRLAHPFSLAVF  217 (316)
T ss_dssp             EECTTTTSSEEEEEEE
T ss_pred             eecCCccCCcEEEEEE
Confidence                234679999997

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=99.50  E-value=4.5e-13  Score=136.16  Aligned_cols=135  Identities=18%  Similarity=0.149  Sum_probs=105.2

Q ss_pred             CCCceEEEEcc-CCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcC-CCcEEEE
Q 011333           82 GIEPYSVEVLP-GGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDD-RGNIYIA  159 (488)
Q Consensus        82 l~~P~GIaVd~-dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~-dG~LYVA  159 (488)
                      +..|.||++|. +|+||++|..+++|.+++.+|.   ...+++.               ..|..|+||++|+ +|.||++
T Consensus       115 ~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~---~~~~l~~---------------~~l~~P~~iavdp~~g~ly~t  176 (349)
T 3v64_C          115 LESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGA---HRKVLLW---------------QSLEKPRAIALHPMEGTIYWT  176 (349)
T ss_dssp             CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSC---SCEEEEC---------------TTCSCEEEEEEETTTTEEEEE
T ss_pred             CCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCC---ceEEEEe---------------CCCCCcceEEEecCcCeEEEe
Confidence            45899999996 7889999999999999999863   2233322               1278899999997 7789999


Q ss_pred             ECCC-CEEEEEc-CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCceEE--
Q 011333          160 DTMN-MAIRKIS-DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCAY--  235 (488)
Q Consensus       160 D~~N-~rIrkid-~ggVttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g~~~~~--  235 (488)
                      |..+ ++|.+++ +|...+....               ..+..|++|++...++.||++|+++++|++++++|.....  
T Consensus       177 d~~~~~~I~r~~~dG~~~~~~~~---------------~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~  241 (349)
T 3v64_C          177 DWGNTPRIEASSMDGSGRRIIAD---------------THLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVI  241 (349)
T ss_dssp             ECSSSCEEEEEETTSCSCEESCC---------------SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE
T ss_pred             ccCCCCEEEEEeCCCCCcEEEEE---------------CCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEE
Confidence            9998 9999999 6554333211               1367899999544789999999999999999999864432  


Q ss_pred             eccCCCcceEEEEe
Q 011333          236 QYGSSFPLGIAVLL  249 (488)
Q Consensus       236 ~~~~g~P~GIav~~  249 (488)
                      ....+.|.||+++.
T Consensus       242 ~~~~~~P~giav~~  255 (349)
T 3v64_C          242 SQGLPHPFAITVFE  255 (349)
T ss_dssp             CSSCSSEEEEEEET
T ss_pred             eCCCCCceEEEEEC
Confidence            34567899999953

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=99.50  E-value=5.4e-13  Score=134.42  Aligned_cols=134  Identities=15%  Similarity=0.102  Sum_probs=105.1

Q ss_pred             CCCceEEEEcc-CCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcC-CCcEEEE
Q 011333           82 GIEPYSVEVLP-GGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDD-RGNIYIA  159 (488)
Q Consensus        82 l~~P~GIaVd~-dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~-dG~LYVA  159 (488)
                      +..|.||++|. +|+||++|..+++|.+++++|.   ...++...               .+..|+||++|+ .|.||++
T Consensus        78 l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~---~~~~l~~~---------------~~~~P~giavdp~~g~ly~t  139 (318)
T 3sov_A           78 LLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGS---LRKVLFWQ---------------ELDQPRAIALDPSSGFMYWT  139 (318)
T ss_dssp             CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSC---SCEEEECS---------------SCSSEEEEEEEGGGTEEEEE
T ss_pred             CCCccEEEEEcCCCeEEEEECCCCEEEEEECCCC---cEEEEEeC---------------CCCCccEEEEeCCCCEEEEE
Confidence            45899999996 7889999999999999999863   23333321               278899999997 6899999


Q ss_pred             ECC-CCEEEEEc-CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCceEEe
Q 011333          160 DTM-NMAIRKIS-DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCAYQ  236 (488)
Q Consensus       160 D~~-N~rIrkid-~gg-VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g~~~~~~  236 (488)
                      |.. +++|.+++ +|. ..++...                .+..|++|++...++.||++|+.+++|++++++|......
T Consensus       140 d~~~~~~I~r~~~dG~~~~~~~~~----------------~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~  203 (318)
T 3sov_A          140 DWGEVPKIERAGMDGSSRFIIINS----------------EIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAV  203 (318)
T ss_dssp             ECSSSCEEEEEETTSCSCEEEECS----------------SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred             ecCCCCEEEEEEcCCCCeEEEEEC----------------CCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEE
Confidence            976 79999999 555 3444321                2678999995446899999999999999999998654332


Q ss_pred             --ccCCCcceEEEEe
Q 011333          237 --YGSSFPLGIAVLL  249 (488)
Q Consensus       237 --~~~g~P~GIav~~  249 (488)
                        .....|.||+++.
T Consensus       204 ~~~~~~~P~glav~~  218 (318)
T 3sov_A          204 VKGSLPHPFALTLFE  218 (318)
T ss_dssp             ECSCCSCEEEEEEET
T ss_pred             ecCCCCCceEEEEeC
Confidence              2467899999974

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=99.50  E-value=5.6e-13  Score=138.19  Aligned_cols=134  Identities=16%  Similarity=0.108  Sum_probs=105.0

Q ss_pred             CCCceEEEEcc-CCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcC-CCcEEEE
Q 011333           82 GIEPYSVEVLP-GGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDD-RGNIYIA  159 (488)
Q Consensus        82 l~~P~GIaVd~-dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~-dG~LYVA  159 (488)
                      +..|.|||+|. +++||++|..+++|.+++++|.   ...+++..               .|..|+||++|+ .|.||++
T Consensus       158 ~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~---~~~~l~~~---------------~~~~P~~iavdp~~g~ly~t  219 (400)
T 3p5b_L          158 IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV---KRKTLFRE---------------NGSKPRAIVVDPVHGFMYWT  219 (400)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEECTTTC---SEEEEEEC---------------SSCCEEEEEEETTTTEEEEE
T ss_pred             CCCcccEEEEecCCceEEEECCCCeEEEEeCCCC---ceEEEEeC---------------CCCCcceEEEecccCeEEEE
Confidence            55899999997 7899999999999999999963   23344321               278899999998 6789999


Q ss_pred             ECC-CCEEEEEc-CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCceEEe
Q 011333          160 DTM-NMAIRKIS-DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCAYQ  236 (488)
Q Consensus       160 D~~-N~rIrkid-~gg-VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g~~~~~~  236 (488)
                      |.+ +++|.+++ +|. ..++...                .|..|++|++....++||++|+.+++|++++++|......
T Consensus       220 d~~~~~~I~~~~~dG~~~~~~~~~----------------~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~  283 (400)
T 3p5b_L          220 DWGTPAKIKKGGLNGVDIYSLVTE----------------NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTI  283 (400)
T ss_dssp             ECSSSCCEEEEETTSCSCEEEECS----------------SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEE
T ss_pred             eCCCCCEEEEEeCCCCccEEEEEC----------------CCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEE
Confidence            987 58999999 555 4444321                3678999995447899999999999999999998654432


Q ss_pred             -c---cCCCcceEEEEe
Q 011333          237 -Y---GSSFPLGIAVLL  249 (488)
Q Consensus       237 -~---~~g~P~GIav~~  249 (488)
                       .   ....|.||+++.
T Consensus       284 ~~~~~~l~~P~gl~v~~  300 (400)
T 3p5b_L          284 LEDEKRLAHPFSLAVFE  300 (400)
T ss_dssp             EECSSTTSSEEEEEEET
T ss_pred             EeCCCCCCCCEEEEEeC
Confidence             2   346799999864

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.46  E-value=4e-12  Score=122.17  Aligned_cols=133  Identities=17%  Similarity=0.220  Sum_probs=101.4

Q ss_pred             CCCceEEEEcc-CCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcC-CCcEEEE
Q 011333           82 GIEPYSVEVLP-GGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDD-RGNIYIA  159 (488)
Q Consensus        82 l~~P~GIaVd~-dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~-dG~LYVA  159 (488)
                      +..|.+|++++ +|.||++|..+++|.+++.++.   ....+...               .+..|++|++|+ .|.|||+
T Consensus        78 ~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~---~~~~~~~~---------------~~~~P~~i~vd~~~g~lyv~  139 (267)
T 1npe_A           78 LGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGT---QRRVLFDT---------------GLVNPRGIVTDPVRGNLYWT  139 (267)
T ss_dssp             CCCEEEEEEETTTTEEEEEETTTTEEEEEETTSC---SCEEEECS---------------SCSSEEEEEEETTTTEEEEE
T ss_pred             CCCccEEEEEecCCeEEEEECCCCEEEEEEcCCC---CEEEEEEC---------------CCCCccEEEEeeCCCEEEEE
Confidence            45899999998 5789999999999999999863   22333221               167899999999 6889999


Q ss_pred             ECC--CCEEEEEc-CCCc-EEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCceE-
Q 011333          160 DTM--NMAIRKIS-DSGV-TTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCA-  234 (488)
Q Consensus       160 D~~--N~rIrkid-~ggV-ttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g~~~~-  234 (488)
                      |..  +++|.+++ ++.. .++...                .+..|++|++....+.|||+|+++++|+++++++.... 
T Consensus       140 ~~~~~~~~I~~~~~dg~~~~~~~~~----------------~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~  203 (267)
T 1npe_A          140 DWNRDNPKIETSHMDGTNRRILAQD----------------NLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRK  203 (267)
T ss_dssp             ECCSSSCEEEEEETTSCCCEEEECT----------------TCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEE
T ss_pred             ECCCCCcEEEEEecCCCCcEEEEEC----------------CCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEE
Confidence            987  68999998 5553 333311                25689999954346799999999999999999864332 


Q ss_pred             EeccCCCcceEEEE
Q 011333          235 YQYGSSFPLGIAVL  248 (488)
Q Consensus       235 ~~~~~g~P~GIav~  248 (488)
                      .......|.||+++
T Consensus       204 ~~~~~~~P~gi~~d  217 (267)
T 1npe_A          204 VLEGLQYPFAVTSY  217 (267)
T ss_dssp             EEECCCSEEEEEEE
T ss_pred             EecCCCCceEEEEe
Confidence            23455689999987

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=99.46  E-value=3.9e-12  Score=129.23  Aligned_cols=135  Identities=15%  Similarity=0.137  Sum_probs=106.4

Q ss_pred             CCCceEEEEcc-CCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcC-CCcEEEE
Q 011333           82 GIEPYSVEVLP-GGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDD-RGNIYIA  159 (488)
Q Consensus        82 l~~P~GIaVd~-dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~-dG~LYVA  159 (488)
                      +.+|.+|++++ ++.||++|..+++|++++++++   ....++..               .+..|.|||+|. .|+||++
T Consensus        72 ~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~---~~~~~~~~---------------~~~~p~glavd~~~g~ly~~  133 (349)
T 3v64_C           72 LENAIALDFHHRRELVFWSDVTLDRILRANLNGS---NVEEVVST---------------GLESPGGLAVDWVHDKLYWT  133 (349)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC---SCEEEECS---------------SCSCCCEEEEETTTTEEEEE
T ss_pred             CCceEEEEEeccccEEEEEeccCCceEEEecCCC---CceEEEeC---------------CCCCccEEEEecCCCeEEEE
Confidence            45799999995 7889999999999999999873   33444322               167899999996 7899999


Q ss_pred             ECCCCEEEEEc-CCCc-EEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCC-CeEEEEEcCCCceEEe
Q 011333          160 DTMNMAIRKIS-DSGV-TTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGN-RAIREIQLHFDDCAYQ  236 (488)
Q Consensus       160 D~~N~rIrkid-~ggV-ttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN-~rIrkI~~~g~~~~~~  236 (488)
                      |..+++|.+++ +|.. .++..                ..+..|.+|++.+..|.||++|+++ ++|.+++++|......
T Consensus       134 d~~~~~I~~~~~dG~~~~~l~~----------------~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~  197 (349)
T 3v64_C          134 DSGTSRIEVANLDGAHRKVLLW----------------QSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRII  197 (349)
T ss_dssp             ETTTTEEEEEETTSCSCEEEEC----------------TTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEES
T ss_pred             cCCCCeEEEEcCCCCceEEEEe----------------CCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEE
Confidence            99999999999 5553 34332                1367899999444589999999998 9999999998655443


Q ss_pred             --ccCCCcceEEEEec
Q 011333          237 --YGSSFPLGIAVLLA  250 (488)
Q Consensus       237 --~~~g~P~GIav~~g  250 (488)
                        .....|.||+++..
T Consensus       198 ~~~~~~~PnGla~d~~  213 (349)
T 3v64_C          198 ADTHLFWPNGLTIDYA  213 (349)
T ss_dssp             CCSSCSCEEEEEEETT
T ss_pred             EECCCCCcceEEEeCC
Confidence              45668999999954

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=99.46  E-value=8.4e-13  Score=135.95  Aligned_cols=134  Identities=19%  Similarity=0.156  Sum_probs=105.4

Q ss_pred             CCCceEEEEcc-CCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcC-CCcEEEE
Q 011333           82 GIEPYSVEVLP-GGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDD-RGNIYIA  159 (488)
Q Consensus        82 l~~P~GIaVd~-dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~-dG~LYVA  159 (488)
                      +..|.||++|+ +|.||++|..+++|.+++.++.   ...+++..               .|..|+||++|+ +|.||++
T Consensus       158 ~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~---~~~~l~~~---------------~l~~P~giavdp~~g~ly~t  219 (386)
T 3v65_B          158 LESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGA---HRKVLLWQ---------------SLEKPRAIALHPMEGTIYWT  219 (386)
T ss_dssp             CSCCCCEEEETTTTEEEEEETTTTEEEECBTTSC---SCEEEECS---------------SCSCEEEEEEETTTTEEEEE
T ss_pred             CCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCC---ceEEeecC---------------CCCCCcEEEEEcCCCeEEEe
Confidence            45899999996 7889999999999999999863   23333321               278899999996 6789999


Q ss_pred             ECCC-CEEEEEc-CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCceEE-
Q 011333          160 DTMN-MAIRKIS-DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCAY-  235 (488)
Q Consensus       160 D~~N-~rIrkid-~gg-VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g~~~~~-  235 (488)
                      |..+ ++|.+++ +|. ..++...                .+..|++|++....++|||+|+.+++|++++++|..... 
T Consensus       220 d~~~~~~I~r~~~dG~~~~~~~~~----------------~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~  283 (386)
T 3v65_B          220 DWGNTPRIEASSMDGSGRRIIADT----------------HLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAV  283 (386)
T ss_dssp             ECSSSCEEEEEETTSCSCEEEECS----------------SCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEE
T ss_pred             ccCCCCEEEEEeCCCCCcEEEEEC----------------CCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEE
Confidence            9998 9999999 555 3444321                266899999544789999999999999999999864432 


Q ss_pred             -eccCCCcceEEEEe
Q 011333          236 -QYGSSFPLGIAVLL  249 (488)
Q Consensus       236 -~~~~g~P~GIav~~  249 (488)
                       ..+.+.|.||+++.
T Consensus       284 ~~~~~~~P~giav~~  298 (386)
T 3v65_B          284 ISQGLPHPFAITVFE  298 (386)
T ss_dssp             ECSSCSSEEEEEEET
T ss_pred             EECCCCCceEEEEEC
Confidence             34567899999953

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.44  E-value=4e-12  Score=122.12  Aligned_cols=132  Identities=14%  Similarity=0.129  Sum_probs=102.3

Q ss_pred             CceEEEEcc-CCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCC-CcEEEEEC
Q 011333           84 EPYSVEVLP-GGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDR-GNIYIADT  161 (488)
Q Consensus        84 ~P~GIaVd~-dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~d-G~LYVAD~  161 (488)
                      +|+++++++ ++.||++|..+++|++++.++.   .+..+...               .+..|.+|++|++ |+|||+|.
T Consensus        37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~---~~~~~~~~---------------~~~~p~~ia~d~~~~~lyv~d~   98 (267)
T 1npe_A           37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGG---EPTTIIRQ---------------DLGSPEGIALDHLGRTIFWTDS   98 (267)
T ss_dssp             EEEEEEEETTTTEEEEEETTTTEEEEEESSSC---CCEEEECT---------------TCCCEEEEEEETTTTEEEEEET
T ss_pred             cEEEEEEecCCCEEEEEECCCCEEEEEecCCC---CcEEEEEC---------------CCCCccEEEEEecCCeEEEEEC
Confidence            799999998 5789999999999999999863   23333321               2678999999984 78999999


Q ss_pred             CCCEEEEEc-CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECC-CCeEEEEECC--CCeEEEEEcCCCceEEe
Q 011333          162 MNMAIRKIS-DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGS-SCSLLVIDRG--NRAIREIQLHFDDCAYQ  236 (488)
Q Consensus       162 ~N~rIrkid-~gg-VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~-~G~LYVaD~g--N~rIrkI~~~g~~~~~~  236 (488)
                      .+++|.+++ ++. ..++...                .+..|.+|+ +++ .+.|||+|.+  +++|.++++++......
T Consensus        99 ~~~~I~~~~~~g~~~~~~~~~----------------~~~~P~~i~-vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~  161 (267)
T 1npe_A           99 QLDRIEVAKMDGTQRRVLFDT----------------GLVNPRGIV-TDPVRGNLYWTDWNRDNPKIETSHMDGTNRRIL  161 (267)
T ss_dssp             TTTEEEEEETTSCSCEEEECS----------------SCSSEEEEE-EETTTTEEEEEECCSSSCEEEEEETTSCCCEEE
T ss_pred             CCCEEEEEEcCCCCEEEEEEC----------------CCCCccEEE-EeeCCCEEEEEECCCCCcEEEEEecCCCCcEEE
Confidence            999999999 554 3444321                256899999 565 7999999987  78999999988654332


Q ss_pred             --ccCCCcceEEEEec
Q 011333          237 --YGSSFPLGIAVLLA  250 (488)
Q Consensus       237 --~~~g~P~GIav~~g  250 (488)
                        .....|.||+++..
T Consensus       162 ~~~~~~~P~gia~d~~  177 (267)
T 1npe_A          162 AQDNLGLPNGLTFDAF  177 (267)
T ss_dssp             ECTTCSCEEEEEEETT
T ss_pred             EECCCCCCcEEEEcCC
Confidence              34568999999853

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=99.44  E-value=3.5e-12  Score=131.32  Aligned_cols=135  Identities=15%  Similarity=0.142  Sum_probs=106.6

Q ss_pred             CCCceEEEEcc-CCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcC-CCcEEEE
Q 011333           82 GIEPYSVEVLP-GGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDD-RGNIYIA  159 (488)
Q Consensus        82 l~~P~GIaVd~-dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~-dG~LYVA  159 (488)
                      +..|.||++++ ++.||++|..+++|+++++++.   .+..++..               .+..|.|||+|. .|+||++
T Consensus       115 ~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~---~~~~~~~~---------------~~~~p~glavd~~~g~lY~~  176 (386)
T 3v65_B          115 LENAIALDFHHRRELVFWSDVTLDRILRANLNGS---NVEEVVST---------------GLESPGGLAVDWVHDKLYWT  176 (386)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC---CEEEEECS---------------SCSCCCCEEEETTTTEEEEE
T ss_pred             CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCC---CcEEEEeC---------------CCCCccEEEEEeCCCeEEEE
Confidence            45899999995 7889999999999999999863   34444332               167899999996 6799999


Q ss_pred             ECCCCEEEEEc-CCCc-EEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCC-CeEEEEEcCCCceEE-
Q 011333          160 DTMNMAIRKIS-DSGV-TTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGN-RAIREIQLHFDDCAY-  235 (488)
Q Consensus       160 D~~N~rIrkid-~ggV-ttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN-~rIrkI~~~g~~~~~-  235 (488)
                      |..+++|.+++ ++.. .++...                .|..|.+|++.+..|.||++|.++ ++|++++++|..... 
T Consensus       177 d~~~~~I~~~~~dg~~~~~l~~~----------------~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~  240 (386)
T 3v65_B          177 DSGTSRIEVANLDGAHRKVLLWQ----------------SLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRII  240 (386)
T ss_dssp             ETTTTEEEECBTTSCSCEEEECS----------------SCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEE
T ss_pred             cCCCCeEEEEeCCCCceEEeecC----------------CCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEE
Confidence            99999999999 5553 444321                367899999544689999999998 999999999865543 


Q ss_pred             -eccCCCcceEEEEec
Q 011333          236 -QYGSSFPLGIAVLLA  250 (488)
Q Consensus       236 -~~~~g~P~GIav~~g  250 (488)
                       ..+...|.||+++..
T Consensus       241 ~~~~~~~PnGlavd~~  256 (386)
T 3v65_B          241 ADTHLFWPNGLTIDYA  256 (386)
T ss_dssp             ECSSCSCEEEEEEEGG
T ss_pred             EECCCCCeeeEEEeCC
Confidence             345667999999843

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=99.44  E-value=3.4e-12  Score=127.55  Aligned_cols=134  Identities=19%  Similarity=0.224  Sum_probs=99.0

Q ss_pred             CCCCceEEEEcc-CCcEEEEECCC-CeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcC-CCcEE
Q 011333           81 LGIEPYSVEVLP-GGELLILDSAN-SNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDD-RGNIY  157 (488)
Q Consensus        81 ~l~~P~GIaVd~-dG~LYVaD~~n-~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~-dG~LY  157 (488)
                      .+..|.+|++|+ +|.||++|.++ ++|.+++++|.   ...+++..               .+..|+||++|+ ++.||
T Consensus       118 ~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~---~~~~~~~~---------------~~~~P~gla~d~~~~~lY  179 (316)
T 1ijq_A          118 NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV---DIYSLVTE---------------NIQWPNGITLDLLSGRLY  179 (316)
T ss_dssp             TTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC---CEEEEECS---------------SCSCEEEEEEETTTTEEE
T ss_pred             CCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCC---CeEEEEEC---------------CCCCceEEEEeccCCEEE
Confidence            356899999997 78899999886 89999999863   22233221               278899999996 56899


Q ss_pred             EEECCCCEEEEEc-CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEc-CCCceE
Q 011333          158 IADTMNMAIRKIS-DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQL-HFDDCA  234 (488)
Q Consensus       158 VAD~~N~rIrkid-~gg-VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~-~g~~~~  234 (488)
                      ++|..+++|.+++ +|. ..+++...              ..+..|.+|+ ++ .+.||++|+++++|.+++. .|....
T Consensus       180 ~~D~~~~~I~~~d~dg~~~~~~~~~~--------------~~~~~P~gia-v~-~~~ly~~d~~~~~V~~~~~~~g~~~~  243 (316)
T 1ijq_A          180 WVDSKLHSISSIDVNGGNRKTILEDE--------------KRLAHPFSLA-VF-EDKVFWTDIINEAIFSANRLTGSDVN  243 (316)
T ss_dssp             EEETTTTEEEEEETTSCSCEEEEECT--------------TTTSSEEEEE-EE-TTEEEEEETTTTEEEEEETTTCCCCE
T ss_pred             EEECCCCeEEEEecCCCceEEEeecC--------------CccCCcEEEE-EE-CCEEEEEECCCCeEEEEeCCCCcceE
Confidence            9999999999999 554 55554321              1366899999 55 5899999999999999997 444332


Q ss_pred             -EeccCCCcceEEEE
Q 011333          235 -YQYGSSFPLGIAVL  248 (488)
Q Consensus       235 -~~~~~g~P~GIav~  248 (488)
                       ...+...|.||++.
T Consensus       244 ~i~~~~~~p~~i~v~  258 (316)
T 1ijq_A          244 LLAENLLSPEDMVLF  258 (316)
T ss_dssp             EEECSCSCCCCEEEE
T ss_pred             EEecCCCCceEEEEe
Confidence             22333456666654

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=99.43  E-value=2.2e-12  Score=145.39  Aligned_cols=134  Identities=16%  Similarity=0.101  Sum_probs=103.5

Q ss_pred             CCCCceEEEEccC-CcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCC-CcEEE
Q 011333           81 LGIEPYSVEVLPG-GELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDR-GNIYI  158 (488)
Q Consensus        81 ~l~~P~GIaVd~d-G~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~d-G~LYV  158 (488)
                      .+..|.|||||.. ++||++|..+++|.+++++|.   ...+++..               .|..|+|||||+. |.||+
T Consensus       469 ~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~---~~~~l~~~---------------~l~~P~gIaVDp~~g~LYw  530 (791)
T 3m0c_C          469 DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV---KRKTLFRE---------------NGSKPRAIVVDPVHGFMYW  530 (791)
T ss_dssp             SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS---SEEEEEEC---------------TTCCEEEEEEETTTTEEEE
T ss_pred             CCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCC---eEEEEEeC---------------CCCCcceEEEecCCCCEEE
Confidence            3568999999974 589999999999999999963   33444322               2778999999984 89999


Q ss_pred             EECCC-CEEEEEc-CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCceEE
Q 011333          159 ADTMN-MAIRKIS-DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCAY  235 (488)
Q Consensus       159 AD~~N-~rIrkid-~gg-VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g~~~~~  235 (488)
                      +|.++ ++|.+++ +|. +.++...                .|..|++|++....++|||+|+++++|++++++|.....
T Consensus       531 tD~g~~~~I~~~~~dG~~~~~lv~~----------------~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~  594 (791)
T 3m0c_C          531 TDWGTPAKIKKGGLNGVDIYSLVTE----------------NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKT  594 (791)
T ss_dssp             EECSSSCEEEEEETTSCCEEEEECS----------------SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred             ecCCCCCeEEEEecCCCceEEEEeC----------------CCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEE
Confidence            99886 8999999 555 3444321                367999999544789999999999999999999865543


Q ss_pred             ec----cCCCcceEEEE
Q 011333          236 QY----GSSFPLGIAVL  248 (488)
Q Consensus       236 ~~----~~g~P~GIav~  248 (488)
                      ..    ....|.||++.
T Consensus       595 v~~~~~~l~~P~glav~  611 (791)
T 3m0c_C          595 ILEDEKRLAHPFSLAVF  611 (791)
T ss_dssp             EEECTTTTSSEEEEEEE
T ss_pred             EecCCCccCCCCEEEEe
Confidence            22    23467777775

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=99.42  E-value=5.5e-12  Score=127.05  Aligned_cols=132  Identities=19%  Similarity=0.197  Sum_probs=100.2

Q ss_pred             CCCCceEEEEcc-CCcEEEEECC-CCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcC-CCcEE
Q 011333           81 LGIEPYSVEVLP-GGELLILDSA-NSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDD-RGNIY  157 (488)
Q Consensus        81 ~l~~P~GIaVd~-dG~LYVaD~~-n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~-dG~LY  157 (488)
                      .+..|.||++|+ +|.||++|.+ +++|++++++|.   ...+++..               .+..|+|||+|+ +++||
T Consensus       120 ~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~---~~~~~~~~---------------~l~~Pnglavd~~~~~lY  181 (318)
T 3sov_A          120 ELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGS---SRFIIINS---------------EIYWPNGLTLDYEEQKLY  181 (318)
T ss_dssp             SCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSC---SCEEEECS---------------SCSCEEEEEEETTTTEEE
T ss_pred             CCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCC---CeEEEEEC---------------CCCCccEEEEeccCCEEE
Confidence            466899999997 6889999975 799999999863   23333321               278899999997 67899


Q ss_pred             EEECCCCEEEEEc-CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcC-CCce-
Q 011333          158 IADTMNMAIRKIS-DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLH-FDDC-  233 (488)
Q Consensus       158 VAD~~N~rIrkid-~gg-VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~-g~~~-  233 (488)
                      ++|+.+++|.+++ +|. ..+++.+                .+..|.+|+ ++ .+.||++|+++++|.++++. |... 
T Consensus       182 ~aD~~~~~I~~~d~dG~~~~~~~~~----------------~~~~P~gla-v~-~~~lywtd~~~~~V~~~~~~~G~~~~  243 (318)
T 3sov_A          182 WADAKLNFIHKSNLDGTNRQAVVKG----------------SLPHPFALT-LF-EDILYWTDWSTHSILACNKYTGEGLR  243 (318)
T ss_dssp             EEETTTTEEEEEETTSCSCEEEECS----------------CCSCEEEEE-EE-TTEEEEEETTTTEEEEEETTTCCSCE
T ss_pred             EEECCCCEEEEEcCCCCceEEEecC----------------CCCCceEEE-Ee-CCEEEEEecCCCeEEEEECCCCCceE
Confidence            9999999999999 554 4555421                266899999 55 57999999999999999984 4432 


Q ss_pred             EEeccCCCcceEEEE
Q 011333          234 AYQYGSSFPLGIAVL  248 (488)
Q Consensus       234 ~~~~~~g~P~GIav~  248 (488)
                      ........|.+|++.
T Consensus       244 ~i~~~~~~P~~i~v~  258 (318)
T 3sov_A          244 EIHSDIFSPMDIHAF  258 (318)
T ss_dssp             EEECCCSSCCCEEEE
T ss_pred             EEeCCCCCCcEEEEe
Confidence            333444567777664

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.42  E-value=8.7e-12  Score=119.64  Aligned_cols=136  Identities=16%  Similarity=0.288  Sum_probs=103.6

Q ss_pred             CCCceEEEE-ccCCcEEEEECC-CCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEE
Q 011333           82 GIEPYSVEV-LPGGELLILDSA-NSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIA  159 (488)
Q Consensus        82 l~~P~GIaV-d~dG~LYVaD~~-n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVA  159 (488)
                      +..|.+|++ +++|+|||++.. +++|++++.++    ......+.              ..+..|.+|++|++|+|||+
T Consensus        76 ~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~~g----~~~~~~~~--------------~~~~~~~~i~~~~~g~l~v~  137 (286)
T 1q7f_A           76 LLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYG----QFVRKFGA--------------TILQHPRGVTVDNKGRIIVV  137 (286)
T ss_dssp             BSSEEEEEEETTTTEEEEEECGGGCEEEEECTTS----CEEEEECT--------------TTCSCEEEEEECTTSCEEEE
T ss_pred             ccCceEEEEEcCCCeEEEEcCCCCCEEEEECCCC----cEEEEecC--------------ccCCCceEEEEeCCCCEEEE
Confidence            458999999 579999999975 78999999775    22222221              12668999999999999999


Q ss_pred             ECCCCEEEEEc-CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCceEEecc
Q 011333          160 DTMNMAIRKIS-DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCAYQYG  238 (488)
Q Consensus       160 D~~N~rIrkid-~ggVttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g~~~~~~~~  238 (488)
                      |..+++|++++ ++.+....+..              ..+..|.+|+ ++++|+|||+|..+++|++++..+........
T Consensus       138 ~~~~~~i~~~~~~g~~~~~~~~~--------------~~~~~p~~i~-~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~  202 (286)
T 1q7f_A          138 ECKVMRVIIFDQNGNVLHKFGCS--------------KHLEFPNGVV-VNDKQEIFISDNRAHCVKVFNYEGQYLRQIGG  202 (286)
T ss_dssp             ETTTTEEEEECTTSCEEEEEECT--------------TTCSSEEEEE-ECSSSEEEEEEGGGTEEEEEETTCCEEEEESC
T ss_pred             ECCCCEEEEEcCCCCEEEEeCCC--------------CccCCcEEEE-ECCCCCEEEEECCCCEEEEEcCCCCEEEEEcc
Confidence            99999999999 55543322211              1356799999 78999999999999999999998765444322


Q ss_pred             ---CCCcceEEEEec
Q 011333          239 ---SSFPLGIAVLLA  250 (488)
Q Consensus       239 ---~g~P~GIav~~g  250 (488)
                         ...|.+|+++..
T Consensus       203 ~g~~~~p~~i~~d~~  217 (286)
T 1q7f_A          203 EGITNYPIGVGINSN  217 (286)
T ss_dssp             TTTSCSEEEEEECTT
T ss_pred             CCccCCCcEEEECCC
Confidence               357999999853

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=99.40  E-value=6.6e-12  Score=137.72  Aligned_cols=135  Identities=12%  Similarity=0.094  Sum_probs=107.0

Q ss_pred             CCCceEEEEcc-CCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcC-CCcEEEE
Q 011333           82 GIEPYSVEVLP-GGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDD-RGNIYIA  159 (488)
Q Consensus        82 l~~P~GIaVd~-dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~-dG~LYVA  159 (488)
                      +..|.|||+|. .++||++|..+++|.+++.+|.   ...+++..               .|+.|++||+|+ +|.||++
T Consensus       391 ~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~---~~~~l~~~---------------~l~~P~~iavdp~~G~ly~t  452 (619)
T 3s94_A          391 IAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGT---MRKILISE---------------DLEEPRAIVLDPMVGYMYWT  452 (619)
T ss_dssp             CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSC---SCEEEECT---------------TCCSEEEEEEETTTTEEEEE
T ss_pred             CCCcCceEEecccCcEEEEeCCCCcEEEEeCCCC---eEEEEEEC---------------CCCCeeeEEEEcCCCcEEEe
Confidence            56899999996 7889999999999999999873   23444321               288999999998 5999999


Q ss_pred             ECCC-CEEEEEc-CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCceEE-
Q 011333          160 DTMN-MAIRKIS-DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCAY-  235 (488)
Q Consensus       160 D~~N-~rIrkid-~gg-VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g~~~~~-  235 (488)
                      |.++ .+|.+++ +|. ..++...                .|..|+||++...+++||++|+++++|++++++|..... 
T Consensus       453 D~g~~~~I~r~~~dG~~~~~l~~~----------------~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~~~~~~  516 (619)
T 3s94_A          453 DWGEIPKIERAALDGSDRVVLVNT----------------SLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRRVL  516 (619)
T ss_dssp             ECSSSCEEEEEETTSCSCEEEECS----------------SCSCEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEE
T ss_pred             cCCCCCEEEEEccCCCccEEEEeC----------------CCCCCeeeEEcccCCEEEEEECCCCEEEEEecCCCceEEE
Confidence            9875 8999998 655 3444321                377999999544689999999999999999999875543 


Q ss_pred             -eccCCCcceEEEEec
Q 011333          236 -QYGSSFPLGIAVLLA  250 (488)
Q Consensus       236 -~~~~g~P~GIav~~g  250 (488)
                       ......|.||++..+
T Consensus       517 ~~~~l~~P~glav~~~  532 (619)
T 3s94_A          517 VEDKIPHIFGFTLLGD  532 (619)
T ss_dssp             EECCCCSSCCEEEETT
T ss_pred             eccCCCCcEEEEEECC
Confidence             345678999998743

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=99.40  E-value=9e-12  Score=129.12  Aligned_cols=139  Identities=17%  Similarity=0.105  Sum_probs=105.0

Q ss_pred             CCCceEEEEcc-CCcEEEEECCCCeEEEEeCCCCc-ccccEEEecCCCCccccCCCcccccccCCcceEEEcC-CCcEEE
Q 011333           82 GIEPYSVEVLP-GGELLILDSANSNLYRISSSLSL-YSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDD-RGNIYI  158 (488)
Q Consensus        82 l~~P~GIaVd~-dG~LYVaD~~n~rI~kid~~g~~-~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~-dG~LYV  158 (488)
                      +..|.+|++++ ++.||++|..+++|++++.++.. .+...+++..               .+..|.|||+|. .++||+
T Consensus       111 ~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~---------------~~~~p~glavD~~~~~lY~  175 (400)
T 3p5b_L          111 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR---------------DIQAPDGLAVDWIHSNIYW  175 (400)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECS---------------SCSCEEEEEEETTTTEEEE
T ss_pred             cCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeC---------------CCCCcccEEEEecCCceEE
Confidence            55899999997 68899999999999999988521 0123334332               277899999997 789999


Q ss_pred             EECCCCEEEEEc-CCCc-EEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECC-CCeEEEEEcCCCceEE
Q 011333          159 ADTMNMAIRKIS-DSGV-TTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRG-NRAIREIQLHFDDCAY  235 (488)
Q Consensus       159 AD~~N~rIrkid-~ggV-ttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~g-N~rIrkI~~~g~~~~~  235 (488)
                      +|..+++|.+++ +++. .++...                .+..|.+|++.+..|.||++|.+ +++|++++++|.....
T Consensus       176 ~d~~~~~I~~~~~~g~~~~~l~~~----------------~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~  239 (400)
T 3p5b_L          176 TDSVLGTVSVADTKGVKRKTLFRE----------------NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS  239 (400)
T ss_dssp             EETTTTEEEEECTTTCSEEEEEEC----------------SSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEE
T ss_pred             EECCCCeEEEEeCCCCceEEEEeC----------------CCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEE
Confidence            999999999999 6653 444321                36789999944458999999987 5899999999865543


Q ss_pred             --eccCCCcceEEEEecC
Q 011333          236 --QYGSSFPLGIAVLLAA  251 (488)
Q Consensus       236 --~~~~g~P~GIav~~g~  251 (488)
                        ......|.||+++...
T Consensus       240 ~~~~~l~~P~glavd~~~  257 (400)
T 3p5b_L          240 LVTENIQWPNGITLDLLS  257 (400)
T ss_dssp             EECSSCSCEEEEEEETTT
T ss_pred             EEECCCCceEEEEEEeCC
Confidence              3455789999999543

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.40  E-value=1.5e-11  Score=118.04  Aligned_cols=141  Identities=15%  Similarity=0.186  Sum_probs=105.4

Q ss_pred             CCCCceEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEE-cCCCcEEEE
Q 011333           81 LGIEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTV-DDRGNIYIA  159 (488)
Q Consensus        81 ~l~~P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAv-D~dG~LYVA  159 (488)
                      .+..|.+|+++++|+|||+|..+++|+++++++.   .+..+ +..    +.     ....+..|.+|++ +++|+|||+
T Consensus        28 ~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~---~~~~~-~~~----~~-----~~~~~~~p~~i~~~~~~g~l~v~   94 (286)
T 1q7f_A           28 QFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGR---FKFQF-GEC----GK-----RDSQLLYPNRVAVVRNSGDIIVT   94 (286)
T ss_dssp             CBSCEEEEEECTTCCEEEEEGGGTEEEEECTTSC---EEEEE-CCB----SS-----STTCBSSEEEEEEETTTTEEEEE
T ss_pred             ccCCCceEEECCCCCEEEEECCCCEEEEECCCCc---EEEEe-ccc----CC-----CcccccCceEEEEEcCCCeEEEE
Confidence            3558999999999999999999999999998852   22233 221    11     1134788999999 589999999


Q ss_pred             ECC-CCEEEEEc-CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCceEEe-
Q 011333          160 DTM-NMAIRKIS-DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCAYQ-  236 (488)
Q Consensus       160 D~~-N~rIrkid-~ggVttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g~~~~~~-  236 (488)
                      |.. +++|++++ ++.+....+.               ..+..|.+|+ ++++|+|||+|..+++|++++..+...... 
T Consensus        95 ~~~~~~~i~~~d~~g~~~~~~~~---------------~~~~~~~~i~-~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~  158 (286)
T 1q7f_A           95 ERSPTHQIQIYNQYGQFVRKFGA---------------TILQHPRGVT-VDNKGRIIVVECKVMRVIIFDQNGNVLHKFG  158 (286)
T ss_dssp             ECGGGCEEEEECTTSCEEEEECT---------------TTCSCEEEEE-ECTTSCEEEEETTTTEEEEECTTSCEEEEEE
T ss_pred             cCCCCCEEEEECCCCcEEEEecC---------------ccCCCceEEE-EeCCCCEEEEECCCCEEEEEcCCCCEEEEeC
Confidence            975 89999999 5554322221               1256799999 788999999999999999999887654433 


Q ss_pred             --ccCCCcceEEEEec
Q 011333          237 --YGSSFPLGIAVLLA  250 (488)
Q Consensus       237 --~~~g~P~GIav~~g  250 (488)
                        .....|.+|+++..
T Consensus       159 ~~~~~~~p~~i~~~~~  174 (286)
T 1q7f_A          159 CSKHLEFPNGVVVNDK  174 (286)
T ss_dssp             CTTTCSSEEEEEECSS
T ss_pred             CCCccCCcEEEEECCC
Confidence              23356899999854

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.40  E-value=5.4e-12  Score=119.28  Aligned_cols=134  Identities=22%  Similarity=0.315  Sum_probs=102.3

Q ss_pred             CCCceEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEEC
Q 011333           82 GIEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADT  161 (488)
Q Consensus        82 l~~P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~  161 (488)
                      +..|.+|+++++|+|||++. +++|+++++++.   ....+..               ..+..|.+|++|++|+|||+|.
T Consensus        66 ~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~---~~~~~~~---------------~~~~~p~~i~~~~~g~l~v~~~  126 (270)
T 1rwi_B           66 LYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSN---NQTVLPF---------------DGLNYPEGLAVDTQGAVYVADR  126 (270)
T ss_dssp             CCSCCCEEECTTCCEEEEET-TTEEEEECTTCS---CCEECCC---------------CSCSSEEEEEECTTCCEEEEEG
T ss_pred             cCCcceeEECCCCCEEEEcC-CCEEEEEeCCCc---eEeeeec---------------CCcCCCcceEECCCCCEEEEEC
Confidence            45899999999999999998 889999998863   2222211               1156799999999999999999


Q ss_pred             CCCEEEEEcCCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCceEEe--cc
Q 011333          162 MNMAIRKISDSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCAYQ--YG  238 (488)
Q Consensus       162 ~N~rIrkid~gg-VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g~~~~~~--~~  238 (488)
                      .+++|.+++.+. ......               ...+..|.+|+ ++++|+|||+|.++++|.+++..+......  ..
T Consensus       127 ~~~~i~~~~~~~~~~~~~~---------------~~~~~~p~~i~-~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~  190 (270)
T 1rwi_B          127 GNNRVVKLAAGSKTQTVLP---------------FTGLNDPDGVA-VDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTD  190 (270)
T ss_dssp             GGTEEEEECTTCCSCEECC---------------CCSCCSCCCEE-ECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSS
T ss_pred             CCCEEEEEECCCceeEeec---------------cccCCCceeEE-EeCCCCEEEEECCCCEEEEEecCCCceEeecccC
Confidence            999999998544 222211               11256799999 788999999999999999999987655432  23


Q ss_pred             CCCcceEEEEec
Q 011333          239 SSFPLGIAVLLA  250 (488)
Q Consensus       239 ~g~P~GIav~~g  250 (488)
                      ...|.+|+++..
T Consensus       191 ~~~p~~i~~d~~  202 (270)
T 1rwi_B          191 ITAPWGIAVDEA  202 (270)
T ss_dssp             CCSEEEEEECTT
T ss_pred             CCCceEEEECCC
Confidence            367889998843

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=99.38  E-value=1e-11  Score=139.97  Aligned_cols=140  Identities=18%  Similarity=0.101  Sum_probs=105.2

Q ss_pred             CCCceEEEEcc-CCcEEEEECCCCeEEEEeCCCCcc-cccEEEecCCCCccccCCCcccccccCCcceEEEcCCC-cEEE
Q 011333           82 GIEPYSVEVLP-GGELLILDSANSNLYRISSSLSLY-SRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRG-NIYI  158 (488)
Q Consensus        82 l~~P~GIaVd~-dG~LYVaD~~n~rI~kid~~g~~~-g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG-~LYV  158 (488)
                      +..|.+|+++. ++.||++|..+++|++++.++... +...+++..               .|..|.|||||..+ +||+
T Consensus       423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~---------------~l~~P~GLAvD~~~~~LY~  487 (791)
T 3m0c_C          423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR---------------DIQAPDGLAVDWIHSNIYW  487 (791)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECS---------------SCSCCCEEEEETTTTEEEE
T ss_pred             CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEec---------------CCCCcceeeeeecCCcEEE
Confidence            55899999997 788999999999999999885211 123344432               27889999999755 8999


Q ss_pred             EECCCCEEEEEc-CCCc-EEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCC-CeEEEEEcCCCceEE
Q 011333          159 ADTMNMAIRKIS-DSGV-TTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGN-RAIREIQLHFDDCAY  235 (488)
Q Consensus       159 AD~~N~rIrkid-~ggV-ttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN-~rIrkI~~~g~~~~~  235 (488)
                      +|..+++|++++ +|.. .+++..                .|..|.+||+.+..|.||++|+++ ++|++++++|.....
T Consensus       488 tD~~~~~I~v~~ldG~~~~~l~~~----------------~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~  551 (791)
T 3m0c_C          488 TDSVLGTVSVADTKGVKRKTLFRE----------------NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS  551 (791)
T ss_dssp             EETTTTEEEEEETTSSSEEEEEEC----------------TTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEE
T ss_pred             EecCCCeEEEEeCCCCeEEEEEeC----------------CCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEE
Confidence            999999999999 6664 444321                366899999544569999999987 899999999876543


Q ss_pred             e--ccCCCcceEEEEecCC
Q 011333          236 Q--YGSSFPLGIAVLLAAG  252 (488)
Q Consensus       236 ~--~~~g~P~GIav~~g~g  252 (488)
                      .  .....|.||+++...+
T Consensus       552 lv~~~l~~P~GLavD~~~~  570 (791)
T 3m0c_C          552 LVTENIQWPNGITLDLLSG  570 (791)
T ss_dssp             EECSSCSCEEEEEEETTTT
T ss_pred             EEeCCCCCceEEEEecCCC
Confidence            3  3456899999995433

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=99.38  E-value=9.6e-12  Score=136.70  Aligned_cols=133  Identities=14%  Similarity=0.117  Sum_probs=105.4

Q ss_pred             CCCceEEEEcc-CCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcC-CCcEEEE
Q 011333           82 GIEPYSVEVLP-GGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDD-RGNIYIA  159 (488)
Q Consensus        82 l~~P~GIaVd~-dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~-dG~LYVA  159 (488)
                      +..|.|||+|. .|+||++|..+++|.+++.+|.   ...+++..               .|..|++||+|+ +|.||++
T Consensus        79 ~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~---~~~~l~~~---------------~l~~P~~iavdp~~G~lY~t  140 (628)
T 4a0p_A           79 LDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQ---HRQVLVWK---------------DLDSPRALALDPAEGFMYWT  140 (628)
T ss_dssp             CSCCCEEEEETTTTEEEEEETTTTEEEEEETTST---TCEEEECS---------------SCCCEEEEEEETTTTEEEEE
T ss_pred             CCCcceEEEEeCCCEEEEEECCCCEEEEEecCCC---cEEEEEeC---------------CCCCcccEEEccCCCeEEEe
Confidence            35799999996 6789999999999999999863   23344321               278899999997 7899999


Q ss_pred             ECC-CCEEEEEc-CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCceEE-
Q 011333          160 DTM-NMAIRKIS-DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCAY-  235 (488)
Q Consensus       160 D~~-N~rIrkid-~gg-VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g~~~~~-  235 (488)
                      |.+ +.+|.+++ +|. +.+++.                 .+..|+||++....++||++|.++++|++++++|..... 
T Consensus       141 D~g~~~~I~r~~~dG~~~~~l~~-----------------~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~~v~  203 (628)
T 4a0p_A          141 EWGGKPKIDRAAMDGSERTTLVP-----------------NVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREVI  203 (628)
T ss_dssp             ECSSSCEEEEEETTSCSCEEEEC-----------------SCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred             CCCCCCEEEEEeCCCCceEEEEC-----------------CCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCceEEe
Confidence            987 78999999 555 555542                 256899999544579999999999999999999854433 


Q ss_pred             eccCCCcceEEEEe
Q 011333          236 QYGSSFPLGIAVLL  249 (488)
Q Consensus       236 ~~~~g~P~GIav~~  249 (488)
                      ......|.|++++.
T Consensus       204 ~~~l~~P~glav~~  217 (628)
T 4a0p_A          204 ADDLPHPFGLTQYQ  217 (628)
T ss_dssp             EECCSCEEEEEEET
T ss_pred             eccCCCceEEEEEC
Confidence            34566899999984

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=99.38  E-value=8.3e-12  Score=123.41  Aligned_cols=134  Identities=18%  Similarity=0.136  Sum_probs=99.0

Q ss_pred             CCceEEEEcc-CCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcC-CCcEEEEE
Q 011333           83 IEPYSVEVLP-GGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDD-RGNIYIAD  160 (488)
Q Consensus        83 ~~P~GIaVd~-dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~-dG~LYVAD  160 (488)
                      ..|.||++++ +|+|||+|.. +.|+++++++   +.+..++...       ++    ..++.|++|++|+ +|+|||+|
T Consensus        80 ~~p~gi~~~~~~g~l~v~d~~-~~i~~~d~~~---g~~~~~~~~~-------~~----~~~~~p~~i~~d~~~G~l~v~d  144 (322)
T 2fp8_A           80 GRTYDISYNLQNNQLYIVDCY-YHLSVVGSEG---GHATQLATSV-------DG----VPFKWLYAVTVDQRTGIVYFTD  144 (322)
T ss_dssp             CCEEEEEEETTTTEEEEEETT-TEEEEECTTC---EECEEEESEE-------TT----EECSCEEEEEECTTTCCEEEEE
T ss_pred             CCCceEEEcCCCCcEEEEECC-CCEEEEeCCC---CEEEEecccC-------CC----CcccccceEEEecCCCEEEEEC
Confidence            3799999997 8999999986 4699999875   4455554421       11    2478899999999 99999999


Q ss_pred             CCC-----------------CEEEEEc-C-CCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCC-eEEEEECCC
Q 011333          161 TMN-----------------MAIRKIS-D-SGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSC-SLLVIDRGN  220 (488)
Q Consensus       161 ~~N-----------------~rIrkid-~-ggVttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G-~LYVaD~gN  220 (488)
                      ..+                 ++|.+++ + +.+..+..                 .+..|++|+ ++++| .|||+|+.+
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~-----------------~~~~p~gia-~~~dg~~lyv~d~~~  206 (322)
T 2fp8_A          145 VSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLK-----------------ELHVPGGAE-VSADSSFVLVAEFLS  206 (322)
T ss_dssp             SCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEE-----------------EESCCCEEE-ECTTSSEEEEEEGGG
T ss_pred             CcccccccccceehcccCCCceEEEEeCCCCEEEEecc-----------------CCccCcceE-ECCCCCEEEEEeCCC
Confidence            763                 5788888 3 33544432                 256899999 67776 599999999


Q ss_pred             CeEEEEEcCCC----ceEEeccCCCcceEEEEec
Q 011333          221 RAIREIQLHFD----DCAYQYGSSFPLGIAVLLA  250 (488)
Q Consensus       221 ~rIrkI~~~g~----~~~~~~~~g~P~GIav~~g  250 (488)
                      ++|+++++.+.    ........+ |.||+++..
T Consensus       207 ~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~  239 (322)
T 2fp8_A          207 HQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNAD  239 (322)
T ss_dssp             TEEEEEESSSTTTTCEEEEEECSS-EEEEEECTT
T ss_pred             CeEEEEECCCCcCCccceEEeCCC-CCCeEECCC
Confidence            99999998852    112222234 999999864

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.36  E-value=1.6e-11  Score=116.00  Aligned_cols=134  Identities=19%  Similarity=0.305  Sum_probs=100.9

Q ss_pred             CCCceEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEEC
Q 011333           82 GIEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADT  161 (488)
Q Consensus        82 l~~P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~  161 (488)
                      +..|.+|+++++|+|||+|..+++|++++..+.   ... ...              ...+..|.+|++|++|+|||+|.
T Consensus       107 ~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~---~~~-~~~--------------~~~~~~p~~i~~~~~g~l~v~~~  168 (270)
T 1rwi_B          107 LNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSK---TQT-VLP--------------FTGLNDPDGVAVDNSGNVYVTDT  168 (270)
T ss_dssp             CSSEEEEEECTTCCEEEEEGGGTEEEEECTTCC---SCE-ECC--------------CCSCCSCCCEEECTTCCEEEEEG
T ss_pred             cCCCcceEECCCCCEEEEECCCCEEEEEECCCc---eeE-eec--------------cccCCCceeEEEeCCCCEEEEEC
Confidence            357999999999999999999999999975431   111 111              01267899999999999999999


Q ss_pred             CCCEEEEEc-CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCceEEec--c
Q 011333          162 MNMAIRKIS-DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCAYQY--G  238 (488)
Q Consensus       162 ~N~rIrkid-~ggVttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g~~~~~~~--~  238 (488)
                      .+++|.+++ ++........               ..+..|.+|+ ++.+|+|||++.++++|++++..+.......  +
T Consensus       169 ~~~~i~~~~~~~~~~~~~~~---------------~~~~~p~~i~-~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~  232 (270)
T 1rwi_B          169 DNNRVVKLEAESNNQVVLPF---------------TDITAPWGIA-VDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTG  232 (270)
T ss_dssp             GGTEEEEECTTTCCEEECCC---------------SSCCSEEEEE-ECTTCCEEEEETTTSCEEEECTTCSCCEECCCCS
T ss_pred             CCCEEEEEecCCCceEeecc---------------cCCCCceEEE-ECCCCCEEEEECCCCcEEEEcCCCCcceeeccCC
Confidence            999999999 4433222110               1246799999 7889999999999999999999876544422  2


Q ss_pred             CCCcceEEEEe
Q 011333          239 SSFPLGIAVLL  249 (488)
Q Consensus       239 ~g~P~GIav~~  249 (488)
                      ...|.+|+++.
T Consensus       233 ~~~p~~i~~~~  243 (270)
T 1rwi_B          233 LNTPLAVAVDS  243 (270)
T ss_dssp             CSCEEEEEECT
T ss_pred             CCCceeEEECC
Confidence            35688888874

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=99.34  E-value=2.7e-11  Score=132.86  Aligned_cols=137  Identities=19%  Similarity=0.213  Sum_probs=108.0

Q ss_pred             CCCceEEEEcc-CCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcC-CCcEEEE
Q 011333           82 GIEPYSVEVLP-GGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDD-RGNIYIA  159 (488)
Q Consensus        82 l~~P~GIaVd~-dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~-dG~LYVA  159 (488)
                      +.+|.+|++|+ +|.||++|..+++|++++++|.   ...+++..               .+..|.|||+|. .++||++
T Consensus       348 l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~---~~~~v~~~---------------~~~~p~GlAvD~~~~~lY~t  409 (619)
T 3s94_A          348 IRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGS---GSQFVVTA---------------QIAHPDGIAVDWVARNLYWT  409 (619)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEETTSC---SCEEEECS---------------SCSCCCEEEEETTTTEEEEE
T ss_pred             cCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCC---ccEEEEEC---------------CCCCcCceEEecccCcEEEE
Confidence            56899999997 7889999999999999999863   34444432               277899999996 7889999


Q ss_pred             ECCCCEEEEEc-CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCC-CeEEEEEcCCCceEE-
Q 011333          160 DTMNMAIRKIS-DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGN-RAIREIQLHFDDCAY-  235 (488)
Q Consensus       160 D~~N~rIrkid-~gg-VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN-~rIrkI~~~g~~~~~-  235 (488)
                      |..+++|.+++ +|. ..++...                .|+.|.+||+.+..|.||++|.++ .+|.++.++|..... 
T Consensus       410 D~~~~~I~v~~~~G~~~~~l~~~----------------~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~~l  473 (619)
T 3s94_A          410 DTGTDRIEVTRLNGTMRKILISE----------------DLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVVL  473 (619)
T ss_dssp             ETTTTEEEEEETTSCSCEEEECT----------------TCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEE
T ss_pred             eCCCCcEEEEeCCCCeEEEEEEC----------------CCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccEEE
Confidence            99999999999 665 3444421                378999999544579999999875 899999999865433 


Q ss_pred             -eccCCCcceEEEEecCC
Q 011333          236 -QYGSSFPLGIAVLLAAG  252 (488)
Q Consensus       236 -~~~~g~P~GIav~~g~g  252 (488)
                       ......|.||+++...+
T Consensus       474 ~~~~l~~P~GlalD~~~~  491 (619)
T 3s94_A          474 VNTSLGWPNGLALDYDEG  491 (619)
T ss_dssp             ECSSCSCEEEEEEETTTT
T ss_pred             EeCCCCCCeeeEEcccCC
Confidence             33567899999995433

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=99.34  E-value=3e-11  Score=132.79  Aligned_cols=135  Identities=15%  Similarity=0.091  Sum_probs=107.3

Q ss_pred             CCCceEEEEcc-CCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcC-CCcEEEE
Q 011333           82 GIEPYSVEVLP-GGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDD-RGNIYIA  159 (488)
Q Consensus        82 l~~P~GIaVd~-dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~-dG~LYVA  159 (488)
                      +.+|.+|++++ +|.||++|..+++|++++.+|.   .+.+++..               .+..|.|||+|. .|+||++
T Consensus        36 ~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~---~~~~v~~~---------------g~~~P~GlAvD~~~~~LY~t   97 (628)
T 4a0p_A           36 VKEASALDFDVTDNRIYWTDISLKTISRAFMNGS---ALEHVVEF---------------GLDYPEGMAVDWLGKNLYWA   97 (628)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC---SCEEEECS---------------SCSCCCEEEEETTTTEEEEE
T ss_pred             CCceEEEEEECCCCEEEEEECCCCeEEEEECCCC---CcEEEEeC---------------CCCCcceEEEEeCCCEEEEE
Confidence            45899999997 6889999999999999999873   34555443               166799999996 5789999


Q ss_pred             ECCCCEEEEEc-CCCc-EEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECC-CCeEEEEEcCCCceE-E
Q 011333          160 DTMNMAIRKIS-DSGV-TTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRG-NRAIREIQLHFDDCA-Y  235 (488)
Q Consensus       160 D~~N~rIrkid-~ggV-ttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~g-N~rIrkI~~~g~~~~-~  235 (488)
                      |..+++|.+++ +|.. .++...                .|..|.+||+.+..|.||++|++ +++|.+++++|.... .
T Consensus        98 D~~~~~I~v~~~dG~~~~~l~~~----------------~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l  161 (628)
T 4a0p_A           98 DTGTNRIEVSKLDGQHRQVLVWK----------------DLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTL  161 (628)
T ss_dssp             ETTTTEEEEEETTSTTCEEEECS----------------SCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEE
T ss_pred             ECCCCEEEEEecCCCcEEEEEeC----------------CCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEE
Confidence            99999999999 6653 444321                36789999954468999999987 899999999986543 3


Q ss_pred             eccCCCcceEEEEec
Q 011333          236 QYGSSFPLGIAVLLA  250 (488)
Q Consensus       236 ~~~~g~P~GIav~~g  250 (488)
                      ......|.||+++..
T Consensus       162 ~~~~~~P~GlalD~~  176 (628)
T 4a0p_A          162 VPNVGRANGLTIDYA  176 (628)
T ss_dssp             ECSCSSEEEEEEETT
T ss_pred             ECCCCCcceEEEccc
Confidence            456678999999864

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.32  E-value=8e-11  Score=111.94  Aligned_cols=135  Identities=16%  Similarity=0.233  Sum_probs=104.2

Q ss_pred             CCCceEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEEC
Q 011333           82 GIEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADT  161 (488)
Q Consensus        82 l~~P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~  161 (488)
                      ...|.+|+++++|+|||++..++.|++++.++    .+..+...              ..+..|.+|++|++|+|||++.
T Consensus       145 ~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g----~~~~~~~~--------------~~~~~~~~i~~d~~g~l~v~~~  206 (300)
T 2qc5_A          145 GSYPAFITLGSDNALWFTENQNNSIGRITNTG----KLEEYPLP--------------TNAAAPVGITSGNDGALWFVEI  206 (300)
T ss_dssp             TCCEEEEEECTTSSEEEEETTTTEEEEECTTC----CEEEEECS--------------STTCCEEEEEECTTSSEEEEET
T ss_pred             CCCceeEEECCCCCEEEEecCCCeEEEECCCC----cEEEeeCC--------------CCCCCcceEEECCCCCEEEEcc
Confidence            45899999999999999999999999999863    33333211              1256799999999999999999


Q ss_pred             CCCEEEEEc-CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCceEEec--c
Q 011333          162 MNMAIRKIS-DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCAYQY--G  238 (488)
Q Consensus       162 ~N~rIrkid-~ggVttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g~~~~~~~--~  238 (488)
                      .+++|.+++ ++.+..+...               ..+..|.+|+ ++++|+|||++.++++|.++++.+....+..  .
T Consensus       207 ~~~~i~~~~~~g~~~~~~~~---------------~~~~~~~~i~-~d~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~  270 (300)
T 2qc5_A          207 MGNKIGRITTTGEISEYDIP---------------TPNARPHAIT-AGKNSEIWFTEWGANQIGRITNDNTIQEYQLQTE  270 (300)
T ss_dssp             TTTEEEEECTTCCEEEEECS---------------STTCCEEEEE-ECSTTCEEEEETTTTEEEEECTTSCEEEEECCST
T ss_pred             CCCEEEEEcCCCcEEEEECC---------------CCCCCceEEE-ECCCCCEEEeccCCCeEEEECCCCcEEEEECCcc
Confidence            999999999 5555544321               1245799999 7889999999999999999999765443322  3


Q ss_pred             CCCcceEEEEec
Q 011333          239 SSFPLGIAVLLA  250 (488)
Q Consensus       239 ~g~P~GIav~~g  250 (488)
                      ...|.+|+++..
T Consensus       271 ~~~~~~i~~~~~  282 (300)
T 2qc5_A          271 NAEPHGITFGKD  282 (300)
T ss_dssp             TCCCCCEEECTT
T ss_pred             CCccceeEeCCC
Confidence            457899998743

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=99.30  E-value=1.6e-11  Score=136.46  Aligned_cols=135  Identities=16%  Similarity=0.101  Sum_probs=101.3

Q ss_pred             CCCceEEEEcc-CCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcC-CCcEEEE
Q 011333           82 GIEPYSVEVLP-GGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDD-RGNIYIA  159 (488)
Q Consensus        82 l~~P~GIaVd~-dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~-dG~LYVA  159 (488)
                      +..|.||+|+. +|+||++|..+++|.++++++.   .+.+++..               .+..|+|||+|+ .|.||++
T Consensus       452 ~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~---~~~~l~~~---------------~~~~P~giavDp~~g~ly~t  513 (699)
T 1n7d_A          452 IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV---KRKTLFRE---------------QGSKPRAIVVDPVHGFMYWT  513 (699)
T ss_dssp             C--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC---CEEEECCC---------------SSCCCCCEECCSSSSCCEEC
T ss_pred             CCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC---ceEEEEeC---------------CCCCcceEEEccCCCcEEEc
Confidence            45799999994 7889999999999999999862   33444321               267899999998 5789999


Q ss_pred             ECCC-CEEEEEc-CCCc-EEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCceEEe
Q 011333          160 DTMN-MAIRKIS-DSGV-TTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCAYQ  236 (488)
Q Consensus       160 D~~N-~rIrkid-~ggV-ttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g~~~~~~  236 (488)
                      |..+ ++|.+++ +|.. .+++.                ..|..|++||+....++|||+|+.+++|++++++|......
T Consensus       514 d~~~~~~I~~~~~dG~~~~~l~~----------------~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~  577 (699)
T 1n7d_A          514 DWGTPAKIKKGGLNGVDIYSLVT----------------ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTI  577 (699)
T ss_dssp             CCSSSCCEEBCCSSSCCCCEESC----------------SSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEE
T ss_pred             ccCCCCeEEEEeCCCCCeeEEEe----------------CCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEE
Confidence            9876 8999998 5543 33321                13678999994335789999999999999999987544332


Q ss_pred             ----ccCCCcceEEEEec
Q 011333          237 ----YGSSFPLGIAVLLA  250 (488)
Q Consensus       237 ----~~~g~P~GIav~~g  250 (488)
                          .....|.||+++..
T Consensus       578 ~~~~~~~~~P~glavd~~  595 (699)
T 1n7d_A          578 LEDEKRLAHPFSLAVFED  595 (699)
T ss_dssp             CCCSSSCSSCCCCEEETT
T ss_pred             EecCCcCCCceEeEEECC
Confidence                23467999999743

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.25  E-value=3.7e-10  Score=107.30  Aligned_cols=135  Identities=11%  Similarity=0.136  Sum_probs=103.6

Q ss_pred             CCCceEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEEC
Q 011333           82 GIEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADT  161 (488)
Q Consensus        82 l~~P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~  161 (488)
                      ...|.+|+++++|+|||++..++.|.++++++    .+..+...              ..+..|.+|++|++|+|||++.
T Consensus       103 ~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g----~~~~~~~~--------------~~~~~~~~i~~d~~g~l~v~~~  164 (300)
T 2qc5_A          103 DSGPYGITEGLNGDIWFTQLNGDRIGKLTADG----TIYEYDLP--------------NKGSYPAFITLGSDNALWFTEN  164 (300)
T ss_dssp             TCCEEEEEECSTTCEEEEETTTTEEEEECTTS----CEEEEECS--------------STTCCEEEEEECTTSSEEEEET
T ss_pred             CCCCccceECCCCCEEEEccCCCeEEEECCCC----CEEEccCC--------------CCCCCceeEEECCCCCEEEEec
Confidence            35799999999999999999889999999874    33333211              1256799999999999999999


Q ss_pred             CCCEEEEEc-CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCceEEe--cc
Q 011333          162 MNMAIRKIS-DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCAYQ--YG  238 (488)
Q Consensus       162 ~N~rIrkid-~ggVttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g~~~~~~--~~  238 (488)
                      .+++|.+++ ++.+..+...               ..+..|.+|+ ++++|+|||++..+++|.+++..+......  ..
T Consensus       165 ~~~~i~~~~~~g~~~~~~~~---------------~~~~~~~~i~-~d~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~  228 (300)
T 2qc5_A          165 QNNSIGRITNTGKLEEYPLP---------------TNAAAPVGIT-SGNDGALWFVEIMGNKIGRITTTGEISEYDIPTP  228 (300)
T ss_dssp             TTTEEEEECTTCCEEEEECS---------------STTCCEEEEE-ECTTSSEEEEETTTTEEEEECTTCCEEEEECSST
T ss_pred             CCCeEEEECCCCcEEEeeCC---------------CCCCCcceEE-ECCCCCEEEEccCCCEEEEEcCCCcEEEEECCCC
Confidence            999999999 5555544321               1245789999 788999999999999999999966544332  23


Q ss_pred             CCCcceEEEEec
Q 011333          239 SSFPLGIAVLLA  250 (488)
Q Consensus       239 ~g~P~GIav~~g  250 (488)
                      ...|.+|+++..
T Consensus       229 ~~~~~~i~~d~~  240 (300)
T 2qc5_A          229 NARPHAITAGKN  240 (300)
T ss_dssp             TCCEEEEEECST
T ss_pred             CCCceEEEECCC
Confidence            456888888744

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=99.22  E-value=5.9e-11  Score=117.24  Aligned_cols=151  Identities=11%  Similarity=0.109  Sum_probs=105.3

Q ss_pred             CCCceEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccc--cCCC---cccccccCCcceEEEcC-CCc
Q 011333           82 GIEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSG--HVDG---KPREARMNHPKGLTVDD-RGN  155 (488)
Q Consensus        82 l~~P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G--~~dG---~a~~a~Ln~P~GIAvD~-dG~  155 (488)
                      +..|.+++++++|++|++|..+++|+++++++   +.+..+.... ...+  ..+|   ......+..|.||++|+ +|+
T Consensus        18 ~~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~---~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~   93 (322)
T 2fp8_A           18 SYAPNSFTFDSTNKGFYTSVQDGRVIKYEGPN---SGFVDFAYAS-PYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ   93 (322)
T ss_dssp             SSCCCCEECCTTCSSEEEECTTSEEEEECCTT---TCEEEEEESC-TTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE
T ss_pred             cCCceEEEEcCCCCEEEEEcCCCeEEEECCCC---CceEEEeccc-ccccccccccccchhccccCCCCceEEEcCCCCc
Confidence            45899999999999666788889999999886   3455554321 0000  0011   11223467899999997 899


Q ss_pred             EEEEECCCCEEEEEc-CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECC-CCeEEEEECCC------------
Q 011333          156 IYIADTMNMAIRKIS-DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGS-SCSLLVIDRGN------------  220 (488)
Q Consensus       156 LYVAD~~N~rIrkid-~gg-VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~-~G~LYVaD~gN------------  220 (488)
                      |||+|.. +.|++++ +++ +++++....            ...+..|++|+ +++ +|+|||+|..+            
T Consensus        94 l~v~d~~-~~i~~~d~~~g~~~~~~~~~~------------~~~~~~p~~i~-~d~~~G~l~v~d~~~~~~~~~~~~~~~  159 (322)
T 2fp8_A           94 LYIVDCY-YHLSVVGSEGGHATQLATSVD------------GVPFKWLYAVT-VDQRTGIVYFTDVSTLYDDRGVQQIMD  159 (322)
T ss_dssp             EEEEETT-TEEEEECTTCEECEEEESEET------------TEECSCEEEEE-ECTTTCCEEEEESCSSCCTTCHHHHHH
T ss_pred             EEEEECC-CCEEEEeCCCCEEEEecccCC------------CCcccccceEE-EecCCCEEEEECCcccccccccceehc
Confidence            9999985 5699999 434 666654211            12467899999 788 99999999763            


Q ss_pred             -----CeEEEEEcCCCce-EEeccCCCcceEEEEec
Q 011333          221 -----RAIREIQLHFDDC-AYQYGSSFPLGIAVLLA  250 (488)
Q Consensus       221 -----~rIrkI~~~g~~~-~~~~~~g~P~GIav~~g  250 (488)
                           ++|.+++..+... ........|.||+++..
T Consensus       160 ~~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~d  195 (322)
T 2fp8_A          160 TSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSAD  195 (322)
T ss_dssp             HTCCCEEEEEEETTTTEEEEEEEEESCCCEEEECTT
T ss_pred             ccCCCceEEEEeCCCCEEEEeccCCccCcceEECCC
Confidence                 6899999875433 23445578999999854

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.22  E-value=5.2e-10  Score=108.12  Aligned_cols=136  Identities=15%  Similarity=0.086  Sum_probs=104.8

Q ss_pred             CCCceEEEEccCCc-EEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEE
Q 011333           82 GIEPYSVEVLPGGE-LLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIAD  160 (488)
Q Consensus        82 l~~P~GIaVd~dG~-LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD  160 (488)
                      +..|.|++++++|+ ||+++..+++|+++++++   + ...+...                ...|.+|+++++|+|||++
T Consensus        27 ~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~---~-~~~~~~~----------------~~~~~~l~~~~dg~l~v~~   86 (296)
T 3e5z_A           27 FTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDG---Q-LSPEMHP----------------SHHQNGHCLNKQGHLIACS   86 (296)
T ss_dssp             CSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTS---C-EEEEESS----------------CSSEEEEEECTTCCEEEEE
T ss_pred             CccccCCeEeCCCCEEEEEeCCCCEEEEEECCC---C-eEEEECC----------------CCCcceeeECCCCcEEEEe
Confidence            44799999999998 999999999999999986   3 4444321                2458999999999999999


Q ss_pred             CCCCEEEEEc--CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEEC-----------------CCC
Q 011333          161 TMNMAIRKIS--DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDR-----------------GNR  221 (488)
Q Consensus       161 ~~N~rIrkid--~ggVttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~-----------------gN~  221 (488)
                      ..+++|.+++  ++.+..+.....            ...+..|++|+ ++++|+|||+|.                 ..+
T Consensus        87 ~~~~~i~~~d~~~g~~~~~~~~~~------------~~~~~~~~~i~-~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~  153 (296)
T 3e5z_A           87 HGLRRLERQREPGGEWESIADSFE------------GKKLNSPNDVC-LAPDGSLWFSDPTYGIDKPEEGYGGEMELPGR  153 (296)
T ss_dssp             TTTTEEEEECSTTCCEEEEECEET------------TEECCCCCCEE-ECTTSCEEEEECSHHHHCGGGSSCCCCCSSSC
T ss_pred             cCCCeEEEEcCCCCcEEEEeeccC------------CCCCCCCCCEE-ECCCCCEEEECCccccccccccccccccCCCc
Confidence            9889999999  455665543211            12366899999 799999999985                 246


Q ss_pred             eEEEEEcCCCceEEeccCCCcceEEEEec
Q 011333          222 AIREIQLHFDDCAYQYGSSFPLGIAVLLA  250 (488)
Q Consensus       222 rIrkI~~~g~~~~~~~~~g~P~GIav~~g  250 (488)
                      .|++++..+...........|.|+++...
T Consensus       154 ~l~~~~~~g~~~~~~~~~~~~~gi~~s~d  182 (296)
T 3e5z_A          154 WVFRLAPDGTLSAPIRDRVKPNGLAFLPS  182 (296)
T ss_dssp             EEEEECTTSCEEEEECCCSSEEEEEECTT
T ss_pred             EEEEECCCCCEEEeecCCCCCccEEECCC
Confidence            89999988655455556677899988754

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=99.18  E-value=4.6e-10  Score=110.55  Aligned_cols=113  Identities=14%  Similarity=0.073  Sum_probs=87.8

Q ss_pred             CCceEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEECC
Q 011333           83 IEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTM  162 (488)
Q Consensus        83 ~~P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~  162 (488)
                      ..|.+++++++|+|||+|..+++|+++++++    ....++..                -..|.||+++++|+|||||..
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g----~~~~~~~~----------------~~~p~gia~~~dG~l~vad~~   91 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVGEIVSITPDG----NQQIHATV----------------EGKVSGLAFTSNGDLVATGWN   91 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTC----CEEEEEEC----------------SSEEEEEEECTTSCEEEEEEC
T ss_pred             CCcceEEECCCCCEEEEeCCCCeEEEECCCC----ceEEEEeC----------------CCCceeEEEcCCCcEEEEecc
Confidence            4799999999999999999999999999985    33333332                124999999999999999976


Q ss_pred             CC--EEEEEc--CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCC
Q 011333          163 NM--AIRKIS--DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFD  231 (488)
Q Consensus       163 N~--rIrkid--~ggVttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g~  231 (488)
                      ++  +|.+++  ++.+..++....               ...|.+++ +..++.+||+|..+++|++++..+.
T Consensus        92 ~~~~~v~~~d~~~g~~~~~~~~~~---------------~~~~~g~~-~~~~~~~~v~d~~~g~i~~~d~~~~  148 (306)
T 2p4o_A           92 ADSIPVVSLVKSDGTVETLLTLPD---------------AIFLNGIT-PLSDTQYLTADSYRGAIWLIDVVQP  148 (306)
T ss_dssp             TTSCEEEEEECTTSCEEEEEECTT---------------CSCEEEEE-ESSSSEEEEEETTTTEEEEEETTTT
T ss_pred             CCcceEEEEcCCCCeEEEEEeCCC---------------ccccCccc-ccCCCcEEEEECCCCeEEEEeCCCC
Confidence            54  588887  455766654211               23567888 5778899999999999999998753

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.18  E-value=9.8e-10  Score=106.20  Aligned_cols=136  Identities=15%  Similarity=0.158  Sum_probs=100.8

Q ss_pred             CCceEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEECC
Q 011333           83 IEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTM  162 (488)
Q Consensus        83 ~~P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~  162 (488)
                      ..|.+|+++++|.|||++..+++|.++++..   +.+..+....           ....++.|++|++|++|+|||+|..
T Consensus        69 ~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~---g~~~~~~~~~-----------~~~~~~~~~~i~~d~~G~l~vtd~~  134 (296)
T 3e5z_A           69 HHQNGHCLNKQGHLIACSHGLRRLERQREPG---GEWESIADSF-----------EGKKLNSPNDVCLAPDGSLWFSDPT  134 (296)
T ss_dssp             SSEEEEEECTTCCEEEEETTTTEEEEECSTT---CCEEEEECEE-----------TTEECCCCCCEEECTTSCEEEEECS
T ss_pred             CCcceeeECCCCcEEEEecCCCeEEEEcCCC---CcEEEEeecc-----------CCCCCCCCCCEEECCCCCEEEECCc
Confidence            4799999999999999999889999999854   3455554321           0123678999999999999999862


Q ss_pred             -----------------CCEEEEEc-CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEE
Q 011333          163 -----------------NMAIRKIS-DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIR  224 (488)
Q Consensus       163 -----------------N~rIrkid-~ggVttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIr  224 (488)
                                       ...|.+++ ++.+..+...                 +..|++|+ ++++|+++|+|+.+++|+
T Consensus       135 ~g~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~-----------------~~~~~gi~-~s~dg~~lv~~~~~~~i~  196 (296)
T 3e5z_A          135 YGIDKPEEGYGGEMELPGRWVFRLAPDGTLSAPIRD-----------------RVKPNGLA-FLPSGNLLVSDTGDNATH  196 (296)
T ss_dssp             HHHHCGGGSSCCCCCSSSCEEEEECTTSCEEEEECC-----------------CSSEEEEE-ECTTSCEEEEETTTTEEE
T ss_pred             cccccccccccccccCCCcEEEEECCCCCEEEeecC-----------------CCCCccEE-ECCCCCEEEEeCCCCeEE
Confidence                             45899998 4556555432                 45789999 678887779999999999


Q ss_pred             EEEcC--CCc---e-EEeccCCCcceEEEEec
Q 011333          225 EIQLH--FDD---C-AYQYGSSFPLGIAVLLA  250 (488)
Q Consensus       225 kI~~~--g~~---~-~~~~~~g~P~GIav~~g  250 (488)
                      ++++.  +..   . ......+.|.+|+++..
T Consensus       197 ~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~  228 (296)
T 3e5z_A          197 RYCLNARGETEYQGVHFTVEPGKTDGLRVDAG  228 (296)
T ss_dssp             EEEECSSSCEEEEEEEECCSSSCCCSEEEBTT
T ss_pred             EEEECCCCcCcCCCeEeeCCCCCCCeEEECCC
Confidence            99986  222   1 11123457899999854

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.17  E-value=1.4e-09  Score=103.23  Aligned_cols=135  Identities=15%  Similarity=0.211  Sum_probs=102.1

Q ss_pred             CCCceEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEEC
Q 011333           82 GIEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADT  161 (488)
Q Consensus        82 l~~P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~  161 (488)
                      ...|.+|+++++|.|||++..++.|+++++++    .+..+...              .....|.+|++|++|+|||++.
T Consensus        98 ~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~g----~~~~~~~~--------------~~~~~~~~i~~~~~g~l~v~~~  159 (299)
T 2z2n_A           98 DSAPYGITEGPNGDIWFTEMNGNRIGRITDDG----KIREYELP--------------NKGSYPSFITLGSDNALWFTEN  159 (299)
T ss_dssp             TCCEEEEEECTTSCEEEEETTTTEEEEECTTC----CEEEEECS--------------STTCCEEEEEECTTSCEEEEET
T ss_pred             CCCceeeEECCCCCEEEEecCCceEEEECCCC----CEEEecCC--------------CCCCCCceEEEcCCCCEEEEeC
Confidence            45899999999999999999889999999853    33433221              1145799999999999999999


Q ss_pred             CCCEEEEEc-CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCceEEec--c
Q 011333          162 MNMAIRKIS-DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCAYQY--G  238 (488)
Q Consensus       162 ~N~rIrkid-~ggVttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g~~~~~~~--~  238 (488)
                      .++.|.+++ ++.+..+...               ..+..|.+|+ ++++|+|||++..++.|.++++.+....+..  .
T Consensus       160 ~~~~i~~~~~~g~~~~~~~~---------------~~~~~~~~i~-~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~  223 (299)
T 2z2n_A          160 QNNAIGRITESGDITEFKIP---------------TPASGPVGIT-KGNDDALWFVEIIGNKIGRITTSGEITEFKIPTP  223 (299)
T ss_dssp             TTTEEEEECTTCCEEEEECS---------------STTCCEEEEE-ECTTSSEEEEETTTTEEEEECTTCCEEEEECSST
T ss_pred             CCCEEEEEcCCCcEEEeeCC---------------CCCCcceeEE-ECCCCCEEEEccCCceEEEECCCCcEEEEECCCC
Confidence            899999999 5555544221               1245789999 7889999999999999999999554333321  2


Q ss_pred             CCCcceEEEEec
Q 011333          239 SSFPLGIAVLLA  250 (488)
Q Consensus       239 ~g~P~GIav~~g  250 (488)
                      ...|.+|+++..
T Consensus       224 ~~~~~~i~~~~~  235 (299)
T 2z2n_A          224 NARPHAITAGAG  235 (299)
T ss_dssp             TCCEEEEEECST
T ss_pred             CCCceeEEECCC
Confidence            356888888743

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.16  E-value=1.9e-09  Score=102.25  Aligned_cols=132  Identities=17%  Similarity=0.224  Sum_probs=99.7

Q ss_pred             CCCceEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEEC
Q 011333           82 GIEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADT  161 (488)
Q Consensus        82 l~~P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~  161 (488)
                      ...|.+|+++++|+||+++..++.|++++.+    +.+..+...              ..+..|.+|++|++|+|||++.
T Consensus       140 ~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~----g~~~~~~~~--------------~~~~~~~~i~~~~~g~l~v~~~  201 (299)
T 2z2n_A          140 GSYPSFITLGSDNALWFTENQNNAIGRITES----GDITEFKIP--------------TPASGPVGITKGNDDALWFVEI  201 (299)
T ss_dssp             TCCEEEEEECTTSCEEEEETTTTEEEEECTT----CCEEEEECS--------------STTCCEEEEEECTTSSEEEEET
T ss_pred             CCCCceEEEcCCCCEEEEeCCCCEEEEEcCC----CcEEEeeCC--------------CCCCcceeEEECCCCCEEEEcc
Confidence            4579999999999999999988999999985    344443221              1256799999999999999999


Q ss_pred             CCCEEEEEc-CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCceEEe--cc
Q 011333          162 MNMAIRKIS-DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCAYQ--YG  238 (488)
Q Consensus       162 ~N~rIrkid-~ggVttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g~~~~~~--~~  238 (488)
                      .++.|.+++ ++.+..+...               ..+..|.+|+ ++++|+|||++..++.|.++++.+....+.  ..
T Consensus       202 ~~~~i~~~~~~g~~~~~~~~---------------~~~~~~~~i~-~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~  265 (299)
T 2z2n_A          202 IGNKIGRITTSGEITEFKIP---------------TPNARPHAIT-AGAGIDLWFTEWGANKIGRLTSNNIIEEYPIQIK  265 (299)
T ss_dssp             TTTEEEEECTTCCEEEEECS---------------STTCCEEEEE-ECSTTCEEEEETTTTEEEEEETTTEEEEEECSSS
T ss_pred             CCceEEEECCCCcEEEEECC---------------CCCCCceeEE-ECCCCCEEEeccCCceEEEECCCCceEEEeCCCC
Confidence            899999999 4555544221               1245789998 788999999999999999999865333322  22


Q ss_pred             CCCcceEEE
Q 011333          239 SSFPLGIAV  247 (488)
Q Consensus       239 ~g~P~GIav  247 (488)
                      ...|.++++
T Consensus       266 ~~~~~~i~~  274 (299)
T 2z2n_A          266 SAEPHGICF  274 (299)
T ss_dssp             SCCEEEEEE
T ss_pred             CCccceEEe
Confidence            345777776

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=99.12  E-value=1.7e-10  Score=128.19  Aligned_cols=114  Identities=20%  Similarity=0.250  Sum_probs=88.7

Q ss_pred             CCCceEEEEcc-CCcEEEEECCC-CeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCC-CcEEE
Q 011333           82 GIEPYSVEVLP-GGELLILDSAN-SNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDR-GNIYI  158 (488)
Q Consensus        82 l~~P~GIaVd~-dG~LYVaD~~n-~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~d-G~LYV  158 (488)
                      +..|.+|++++ .|.||++|.++ ++|.+++++|..   ..+++.               ..|..|+|||+|++ +.|||
T Consensus       495 ~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~---~~~l~~---------------~~l~~PnGlavd~~~~~LY~  556 (699)
T 1n7d_A          495 GSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD---IYSLVT---------------ENIQWPNGITLDLLSGRLYW  556 (699)
T ss_dssp             SCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCC---CCEESC---------------SSCSSCCCEEECTTTCCEEE
T ss_pred             CCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCC---eeEEEe---------------CCCCCccEEEEeccCCEEEE
Confidence            56899999998 67899999876 899999988632   222221               12788999999975 68999


Q ss_pred             EECCCCEEEEEc-CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcC
Q 011333          159 ADTMNMAIRKIS-DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLH  229 (488)
Q Consensus       159 AD~~N~rIrkid-~gg-VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~  229 (488)
                      +|+.+++|.+++ ++. ..+++..              ...+..|.+|+ ++. +.||++|+++++|+++++.
T Consensus       557 aD~~~~~I~~~d~dG~~~~~~~~~--------------~~~~~~P~gla-vd~-~~lywtd~~~~~V~~~d~~  613 (699)
T 1n7d_A          557 VDSKLHSISSIDVNGGNRKTILED--------------EKRLAHPFSLA-VFE-DKVFWTDIINEAIFSANRL  613 (699)
T ss_dssp             EETTTTEEEEECSSSSCCEEECCC--------------SSSCSSCCCCE-EET-TEEEEECSTTTCEEEEETT
T ss_pred             EecCCCeEEEEccCCCceEEEEec--------------CCcCCCceEeE-EEC-CEEEEEeCCCCeEEEEEcc
Confidence            999999999999 554 4555432              12367899999 554 5999999999999999974

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=99.11  E-value=1.4e-09  Score=110.54  Aligned_cols=134  Identities=10%  Similarity=0.081  Sum_probs=84.0

Q ss_pred             CCCceEEEEccC----CcEEEEECCC-----CeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcC
Q 011333           82 GIEPYSVEVLPG----GELLILDSAN-----SNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDD  152 (488)
Q Consensus        82 l~~P~GIaVd~d----G~LYVaD~~n-----~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~  152 (488)
                      ...|.||+++++    |.|||++..+     ++|.+++.++.......+++.....         .....+.|.+|++++
T Consensus        74 ~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~---------~~~~~h~~~~l~~~p  144 (352)
T 2ism_A           74 ESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPA---------RPHGLHSGGRIAFGP  144 (352)
T ss_dssp             TCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECC---------CTTCCCCCCCEEECT
T ss_pred             CCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCC---------CCCCCcCCceEEECC
Confidence            457999999997    8899999754     7999999875322222333221100         011256789999999


Q ss_pred             CCcEEEEECC-------------CCEEEEEc-CCCcEEEeCCccCCCCCC--CCCCcccccCCCCCeeEEECC-CCeEEE
Q 011333          153 RGNIYIADTM-------------NMAIRKIS-DSGVTTIAGGKWGRGGGH--VDGPSEDAKFSNDFDVVYIGS-SCSLLV  215 (488)
Q Consensus       153 dG~LYVAD~~-------------N~rIrkid-~ggVttIaGg~~g~~~g~--~dG~~~~a~f~~P~gIa~vd~-~G~LYV  215 (488)
                      +|.|||++..             ..+|.+|+ ++.+.  .+.+  + .+.  ........-+.+|++|+ +++ +|.|||
T Consensus       145 dG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p--~~np--f-~~~~~~~~~i~a~G~rnp~g~a-~d~~~g~l~v  218 (352)
T 2ism_A          145 DGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPA--PGNP--F-LGRRGARPEVYSLGHRNPQGLA-WHPKTGELFS  218 (352)
T ss_dssp             TSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBC--TTCT--T-TTCTTSCTTEEEECCSEECCCE-ECTTTCCEEE
T ss_pred             CCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCC--CCCc--c-cCCCCCCccEEEEcCCCcccEE-EECCCCCEEE
Confidence            9999999742             35899998 44321  1110  0 000  00011122367899999 576 899999


Q ss_pred             EECCCCe--------EEEEEcCC
Q 011333          216 IDRGNRA--------IREIQLHF  230 (488)
Q Consensus       216 aD~gN~r--------IrkI~~~g  230 (488)
                      +|.+++.        |..|...+
T Consensus       219 ~d~g~~~~~~~~~dei~~i~~G~  241 (352)
T 2ism_A          219 SEHGPSGEQGYGHDEVNLIVPGG  241 (352)
T ss_dssp             EEECC------CCCEEEEECTTC
T ss_pred             EEcCCCCCCCCCCeEEEEeccCC
Confidence            9998877        77776543

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=99.11  E-value=1.8e-09  Score=110.24  Aligned_cols=150  Identities=21%  Similarity=0.240  Sum_probs=104.3

Q ss_pred             CCceeEEeecCCCCCCCceEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcce
Q 011333           68 SGYTVETVFDGSKLGIEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKG  147 (488)
Q Consensus        68 dG~~~~~~~~G~~~l~~P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~G  147 (488)
                      .++..+....+   +..|.+|+++++|+|||++.. ++|++++.++    . ..+++....          ...+..|.|
T Consensus        17 ~~~~~~~va~~---l~~P~~ia~~pdG~l~V~e~~-g~I~~~d~~G----~-~~~~~~~v~----------~~g~~g~~g   77 (354)
T 3a9g_A           17 WKFKISEVASD---LEVPWSIAPLGGGRYLVTERP-GRLVLISPSG----K-KLVASFDVA----------NVGEAGLLG   77 (354)
T ss_dssp             CCEEEEEEECS---CSCEEEEEEEETTEEEEEETT-TEEEEECSSC----E-EEEEECCCC----------CSTTCSEEE
T ss_pred             CCeEEEEEeCC---CCCCeEEEEcCCCeEEEEeCC-CEEEEEeCCC----c-eEeecccee----------ecCCCceee
Confidence            34555555543   668999999999999999987 8999998663    4 444432100          011567999


Q ss_pred             EEEcCC----CcEEEEECC---C----CEEEEEc-CCC------cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECC
Q 011333          148 LTVDDR----GNIYIADTM---N----MAIRKIS-DSG------VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGS  209 (488)
Q Consensus       148 IAvD~d----G~LYVAD~~---N----~rIrkid-~gg------VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~  209 (488)
                      |+++++    |.|||++..   +    ++|.+++ ++.      ..++..+-.            ......|.+|+ +++
T Consensus        78 ia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~------------~~~~h~~~~l~-~~p  144 (354)
T 3a9g_A           78 LALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIP------------GAYIHNGGRIR-FGP  144 (354)
T ss_dssp             EEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEE------------CCSSCCCCCEE-ECT
T ss_pred             EEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCC------------CCCCcCCceEE-ECC
Confidence            999996    899999974   3    7899998 433      222321100            11245688999 789


Q ss_pred             CCeEEEEECC-------------CCeEEEEEcCCC---------ceEEeccCCCcceEEEEe
Q 011333          210 SCSLLVIDRG-------------NRAIREIQLHFD---------DCAYQYGSSFPLGIAVLL  249 (488)
Q Consensus       210 ~G~LYVaD~g-------------N~rIrkI~~~g~---------~~~~~~~~g~P~GIav~~  249 (488)
                      +|.|||++..             +++|.+|+++|.         ...+..+...|.||+++.
T Consensus       145 DG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~~~~i~a~G~rnp~Gla~d~  206 (354)
T 3a9g_A          145 DGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFPNSPIWSYGHRNPQGIDWHR  206 (354)
T ss_dssp             TSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSSTTCCEEEECCSCCCEEEECT
T ss_pred             CCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCCCCcEEEEccCCcceEEEeC
Confidence            9999999632             368999999874         234456667799999986

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.11  E-value=2.2e-09  Score=105.09  Aligned_cols=134  Identities=10%  Similarity=0.098  Sum_probs=102.0

Q ss_pred             CCceEEEEccCCc-EEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEEC
Q 011333           83 IEPYSVEVLPGGE-LLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADT  161 (488)
Q Consensus        83 ~~P~GIaVd~dG~-LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~  161 (488)
                      ..+.|++.+++|+ ||++|..+++|+++++++    .+..+...                -..|+++++|++|+||+++.
T Consensus        45 ~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g----~~~~~~~~----------------~~~~~gl~~d~dG~l~v~~~  104 (305)
T 3dr2_A           45 TWSEGPAWWEAQRTLVWSDLVGRRVLGWREDG----TVDVLLDA----------------TAFTNGNAVDAQQRLVHCEH  104 (305)
T ss_dssp             SSEEEEEEEGGGTEEEEEETTTTEEEEEETTS----CEEEEEES----------------CSCEEEEEECTTSCEEEEET
T ss_pred             cCccCCeEeCCCCEEEEEECCCCEEEEEeCCC----CEEEEeCC----------------CCccceeeECCCCCEEEEEC
Confidence            3678999999988 999999999999999864    34444322                23589999999999999999


Q ss_pred             CCCEEEEEc-CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEEC-----------------CCCeE
Q 011333          162 MNMAIRKIS-DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDR-----------------GNRAI  223 (488)
Q Consensus       162 ~N~rIrkid-~ggVttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~-----------------gN~rI  223 (488)
                      .+++|.+++ ++.+++++....            ...++.|++|+ ++++|+|||+|.                 ..+.|
T Consensus       105 ~~~~v~~~~~~g~~~~~~~~~~------------~~~~~~~~~i~-~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v  171 (305)
T 3dr2_A          105 GRRAITRSDADGQAHLLVGRYA------------GKRLNSPNDLI-VARDGAIWFTDPPFGLRKPSQGCPADPELAHHSV  171 (305)
T ss_dssp             TTTEEEEECTTSCEEEEECEET------------TEECSCCCCEE-ECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEE
T ss_pred             CCCEEEEECCCCCEEEEEeccC------------CCccCCCCCEE-ECCCCCEEEeCcCCCccccccccccccccCCCeE
Confidence            889999999 666776654321            12467899999 799999999984                 23689


Q ss_pred             EEEEcC-CCceEEeccCCCcceEEEEec
Q 011333          224 REIQLH-FDDCAYQYGSSFPLGIAVLLA  250 (488)
Q Consensus       224 rkI~~~-g~~~~~~~~~g~P~GIav~~g  250 (488)
                      +++++. +...... ....|.|+++...
T Consensus       172 ~~~d~~~g~~~~~~-~~~~p~gl~~spd  198 (305)
T 3dr2_A          172 YRLPPDGSPLQRMA-DLDHPNGLAFSPD  198 (305)
T ss_dssp             EEECSSSCCCEEEE-EESSEEEEEECTT
T ss_pred             EEEcCCCCcEEEEe-cCCCCcceEEcCC
Confidence            999985 4433333 5567888888644

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.10  E-value=1.9e-09  Score=105.56  Aligned_cols=134  Identities=16%  Similarity=0.195  Sum_probs=99.6

Q ss_pred             CCceEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEECC
Q 011333           83 IEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTM  162 (488)
Q Consensus        83 ~~P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~  162 (488)
                      ..|.+++++++|+||+++..+++|.+++.++    .+..++...       .    ...++.|++|++|++|+|||+|..
T Consensus        86 ~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~g----~~~~~~~~~-------~----~~~~~~~~~i~~d~dG~l~~td~~  150 (305)
T 3dr2_A           86 AFTNGNAVDAQQRLVHCEHGRRAITRSDADG----QAHLLVGRY-------A----GKRLNSPNDLIVARDGAIWFTDPP  150 (305)
T ss_dssp             SCEEEEEECTTSCEEEEETTTTEEEEECTTS----CEEEEECEE-------T----TEECSCCCCEEECTTSCEEEECCS
T ss_pred             CccceeeECCCCCEEEEECCCCEEEEECCCC----CEEEEEecc-------C----CCccCCCCCEEECCCCCEEEeCcC
Confidence            3799999999999999999989999999874    455555421       1    134788999999999999999841


Q ss_pred             -----------------CCEEEEEcC--CCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCC-eEEEEECCC--
Q 011333          163 -----------------NMAIRKISD--SGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSC-SLLVIDRGN--  220 (488)
Q Consensus       163 -----------------N~rIrkid~--ggVttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G-~LYVaD~gN--  220 (488)
                                       ...|.+++.  +.+..+. .                 +..|++++ +++++ .|||+|+.+  
T Consensus       151 ~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~-----------------~~~p~gl~-~spdg~~lyv~~~~~~~  211 (305)
T 3dr2_A          151 FGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-D-----------------LDHPNGLA-FSPDEQTLYVSQTPEQG  211 (305)
T ss_dssp             GGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-E-----------------ESSEEEEE-ECTTSSEEEEEECCC--
T ss_pred             CCccccccccccccccCCCeEEEEcCCCCcEEEEe-c-----------------CCCCcceE-EcCCCCEEEEEecCCcC
Confidence                             357889983  4465554 2                 34789999 56666 599999974  


Q ss_pred             ---CeEEEEEcCCCceE-----EeccCCCcceEEEEec
Q 011333          221 ---RAIREIQLHFDDCA-----YQYGSSFPLGIAVLLA  250 (488)
Q Consensus       221 ---~rIrkI~~~g~~~~-----~~~~~g~P~GIav~~g  250 (488)
                         ++|++++..+....     .....+.|.||+++..
T Consensus       212 ~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~  249 (305)
T 3dr2_A          212 HGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRG  249 (305)
T ss_dssp             -CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTT
T ss_pred             CCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCC
Confidence               89999998754311     1123467999999855

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=99.08  E-value=2e-09  Score=109.50  Aligned_cols=141  Identities=16%  Similarity=0.165  Sum_probs=98.7

Q ss_pred             CCCceEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCC----CcEE
Q 011333           82 GIEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDR----GNIY  157 (488)
Q Consensus        82 l~~P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~d----G~LY  157 (488)
                      +..|.+|+++++|+|||+|.. ++|++++ ++    ....+++....          ...+..|.||+++++    |.||
T Consensus        30 l~~P~~ia~~pdG~l~V~e~~-g~I~~i~-~g----~~~~~~~~~v~----------~~g~~~p~gia~~pdf~~~g~lY   93 (352)
T 2ism_A           30 LEVPWALAFLPDGGMLIAERP-GRIRLFR-EG----RLSTYAELSVY----------HRGESGLLGLALHPRFPQEPYVY   93 (352)
T ss_dssp             CSCEEEEEECTTSCEEEEETT-TEEEEEE-TT----EEEEEEECCCC----------CSTTCSEEEEEECTTTTTSCEEE
T ss_pred             CCCceEEEEcCCCeEEEEeCC-CeEEEEE-CC----CccEeecceEe----------ecCCCCceeEEECCCCCCCCEEE
Confidence            558999999999999999986 8999999 53    44455432100          012567999999997    7999


Q ss_pred             EEECCC-----CEEEEEc-CCC-c---EEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECC--------
Q 011333          158 IADTMN-----MAIRKIS-DSG-V---TTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRG--------  219 (488)
Q Consensus       158 VAD~~N-----~rIrkid-~gg-V---ttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~g--------  219 (488)
                      |+++.+     ++|.+++ ++. +   .++..+-..          .......|.+|+ ++++|.|||++..        
T Consensus        94 v~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~----------~~~~~h~~~~l~-~~pdG~Lyv~~G~~~~~~~~~  162 (352)
T 2ism_A           94 AYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPA----------RPHGLHSGGRIA-FGPDGMLYVTTGEVYERELAQ  162 (352)
T ss_dssp             EEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECC----------CTTCCCCCCCEE-ECTTSCEEEECCCTTCGGGGG
T ss_pred             EEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCC----------CCCCCcCCceEE-ECCCCCEEEEECCCCCCcccc
Confidence            999865     8899998 432 2   223221000          011356788999 7899999999732        


Q ss_pred             -----CCeEEEEEcCCC--------------ceEEeccCCCcceEEEEe
Q 011333          220 -----NRAIREIQLHFD--------------DCAYQYGSSFPLGIAVLL  249 (488)
Q Consensus       220 -----N~rIrkI~~~g~--------------~~~~~~~~g~P~GIav~~  249 (488)
                           .++|.+|+++|.              ...+..+...|.||+++.
T Consensus       163 d~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~g~a~d~  211 (352)
T 2ism_A          163 DLASLGGKILRLTPEGEPAPGNPFLGRRGARPEVYSLGHRNPQGLAWHP  211 (352)
T ss_dssp             CTTCSSSEEEEECTTSSBCTTCTTTTCTTSCTTEEEECCSEECCCEECT
T ss_pred             CCCCCceEEEEEcCCCCCCCCCcccCCCCCCccEEEEcCCCcccEEEEC
Confidence                 368999999872              223445556699999986

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=99.05  E-value=4.3e-09  Score=103.60  Aligned_cols=140  Identities=11%  Similarity=-0.012  Sum_probs=97.4

Q ss_pred             CceEEEEccCCcEEEEECCCC--eEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEEC
Q 011333           84 EPYSVEVLPGGELLILDSANS--NLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADT  161 (488)
Q Consensus        84 ~P~GIaVd~dG~LYVaD~~n~--rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~  161 (488)
                      .|++|+++++|+|||+|..++  +|++++...   +.+..++...              ....|.|+++++++++||+|.
T Consensus        73 ~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~---g~~~~~~~~~--------------~~~~~~g~~~~~~~~~~v~d~  135 (306)
T 2p4o_A           73 KVSGLAFTSNGDLVATGWNADSIPVVSLVKSD---GTVETLLTLP--------------DAIFLNGITPLSDTQYLTADS  135 (306)
T ss_dssp             EEEEEEECTTSCEEEEEECTTSCEEEEEECTT---SCEEEEEECT--------------TCSCEEEEEESSSSEEEEEET
T ss_pred             CceeEEEcCCCcEEEEeccCCcceEEEEcCCC---CeEEEEEeCC--------------CccccCcccccCCCcEEEEEC
Confidence            799999999999999997654  599988654   4555555431              134578999988889999999


Q ss_pred             CCCEEEEEcC-CC---cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCc----e
Q 011333          162 MNMAIRKISD-SG---VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDD----C  233 (488)
Q Consensus       162 ~N~rIrkid~-gg---VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g~~----~  233 (488)
                      .+++|.+++. ++   +....+.  .. ..     .....|..|++|.  .+.+.|||+|+.+++|++|+.+++.    .
T Consensus       136 ~~g~i~~~d~~~~~~~v~~~~~~--~~-~~-----~~~~~~~~pngis--~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~  205 (306)
T 2p4o_A          136 YRGAIWLIDVVQPSGSIWLEHPM--LA-RS-----NSESVFPAANGLK--RFGNFLYVSNTEKMLLLRIPVDSTDKPGEP  205 (306)
T ss_dssp             TTTEEEEEETTTTEEEEEEECGG--GS-CS-----STTCCSCSEEEEE--EETTEEEEEETTTTEEEEEEBCTTSCBCCC
T ss_pred             CCCeEEEEeCCCCcEeEEEECCc--cc-cc-----cccCCCCcCCCcC--cCCCEEEEEeCCCCEEEEEEeCCCCCCCcc
Confidence            8999999994 32   2222221  00 00     0113467899984  3456899999999999999987521    1


Q ss_pred             EEeccCCCcceEEEEec
Q 011333          234 AYQYGSSFPLGIAVLLA  250 (488)
Q Consensus       234 ~~~~~~g~P~GIav~~g  250 (488)
                      ........|.||+++..
T Consensus       206 ~~~~~~~~P~gi~vd~d  222 (306)
T 2p4o_A          206 EIFVEQTNIDDFAFDVE  222 (306)
T ss_dssp             EEEEESCCCSSEEEBTT
T ss_pred             EEEeccCCCCCeEECCC
Confidence            12222367999999954

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.05  E-value=2.2e-09  Score=104.95  Aligned_cols=132  Identities=11%  Similarity=0.033  Sum_probs=94.5

Q ss_pred             CCCceEEEEccCCcEEEEEC-----------CCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEE
Q 011333           82 GIEPYSVEVLPGGELLILDS-----------ANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTV  150 (488)
Q Consensus        82 l~~P~GIaVd~dG~LYVaD~-----------~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAv  150 (488)
                      ...|.+++++++|+||+++.           ..++|+++++++    .+..+...                +..|+||++
T Consensus        97 ~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g----~~~~~~~~----------------~~~pngi~~  156 (297)
T 3g4e_A           97 NNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDH----HVKKYFDQ----------------VDISNGLDW  156 (297)
T ss_dssp             SEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTS----CEEEEEEE----------------ESBEEEEEE
T ss_pred             CCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCC----CEEEEeec----------------cccccceEE
Confidence            45689999999999999973           346899999874    33444322                567999999


Q ss_pred             cCCCc-EEEEECCCCEEEEEc-C---CCcE---EEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCe
Q 011333          151 DDRGN-IYIADTMNMAIRKIS-D---SGVT---TIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRA  222 (488)
Q Consensus       151 D~dG~-LYVAD~~N~rIrkid-~---ggVt---tIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~r  222 (488)
                      +++|+ |||+|+.+++|.+++ +   +.+.   .++....              ....|.+|+ +|.+|+|||++.++++
T Consensus       157 spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~--------------~~~~p~g~~-~d~~G~lwva~~~~~~  221 (297)
T 3g4e_A          157 SLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEK--------------EEQIPDGMC-IDAEGKLWVACYNGGR  221 (297)
T ss_dssp             CTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCG--------------GGCEEEEEE-EBTTSCEEEEEETTTE
T ss_pred             cCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCC--------------CCCCCCeeE-ECCCCCEEEEEcCCCE
Confidence            99996 999999999999997 2   3232   2221100              113689999 7999999999999999


Q ss_pred             EEEEEcC-CCceEEec-cCCCcceEEEE
Q 011333          223 IREIQLH-FDDCAYQY-GSSFPLGIAVL  248 (488)
Q Consensus       223 IrkI~~~-g~~~~~~~-~~g~P~GIav~  248 (488)
                      |.++++. |....... ....|..+++.
T Consensus       222 v~~~d~~tG~~~~~i~~p~~~~t~~~f~  249 (297)
T 3g4e_A          222 VIRLDPVTGKRLQTVKLPVDKTTSCCFG  249 (297)
T ss_dssp             EEEECTTTCCEEEEEECSSSBEEEEEEE
T ss_pred             EEEEcCCCceEEEEEECCCCCceEEEEe
Confidence            9999997 54333322 22356666665

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.02  E-value=3.1e-09  Score=103.80  Aligned_cols=133  Identities=11%  Similarity=0.070  Sum_probs=95.5

Q ss_pred             CceEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEECC-
Q 011333           84 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTM-  162 (488)
Q Consensus        84 ~P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~-  162 (488)
                      .|.+++++++|+|||+.  .+.|++++.++   +.+..++....+           ..++.|++|++|++|+|||++.. 
T Consensus        55 ~~~~i~~~~dG~l~v~~--~~~l~~~d~~~---g~~~~~~~~~~~-----------~~~~~~~di~~d~dG~l~~~~~~~  118 (297)
T 3g4e_A           55 PVSSVALRQSGGYVATI--GTKFCALNWKE---QSAVVLATVDND-----------KKNNRFNDGKVDPAGRYFAGTMAE  118 (297)
T ss_dssp             CEEEEEEBTTSSEEEEE--TTEEEEEETTT---TEEEEEEECCTT-----------CSSEEEEEEEECTTSCEEEEEEEC
T ss_pred             ceEEEEECCCCCEEEEE--CCeEEEEECCC---CcEEEEEecCCC-----------CCCCCCCCEEECCCCCEEEecCCc
Confidence            68999999999999997  46999999876   455555442101           12567999999999999999843 


Q ss_pred             ----------CCEEEEEc-CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCC-eEEEEECCCCeEEEEEcC-
Q 011333          163 ----------NMAIRKIS-DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSC-SLLVIDRGNRAIREIQLH-  229 (488)
Q Consensus       163 ----------N~rIrkid-~ggVttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G-~LYVaD~gN~rIrkI~~~-  229 (488)
                                ..+|.+++ ++.+..+..                 .+..|++|+ +++++ .|||+|+.+++|++++.+ 
T Consensus       119 ~~~~~~~~~~~~~l~~~d~~g~~~~~~~-----------------~~~~pngi~-~spdg~~lyv~~~~~~~i~~~~~d~  180 (297)
T 3g4e_A          119 ETAPAVLERHQGALYSLFPDHHVKKYFD-----------------QVDISNGLD-WSLDHKIFYYIDSLSYSVDAFDYDL  180 (297)
T ss_dssp             CSBTTBCCTTCEEEEEECTTSCEEEEEE-----------------EESBEEEEE-ECTTSCEEEEEEGGGTEEEEEEECT
T ss_pred             ccccccccCCCcEEEEEECCCCEEEEee-----------------ccccccceE-EcCCCCEEEEecCCCCcEEEEeccC
Confidence                      35788888 455555432                 245789999 45555 699999999999999874 


Q ss_pred             --CCce--E-E---eccCCCcceEEEEec
Q 011333          230 --FDDC--A-Y---QYGSSFPLGIAVLLA  250 (488)
Q Consensus       230 --g~~~--~-~---~~~~g~P~GIav~~g  250 (488)
                        |...  . .   ....+.|.||+++..
T Consensus       181 ~~G~~~~~~~~~~~~~~~~~p~g~~~d~~  209 (297)
T 3g4e_A          181 QTGQISNRRSVYKLEKEEQIPDGMCIDAE  209 (297)
T ss_dssp             TTCCEEEEEEEEECCGGGCEEEEEEEBTT
T ss_pred             CCCcccCcEEEEECCCCCCCCCeeEECCC
Confidence              2111  1 1   112367999999854

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.00  E-value=5.2e-09  Score=100.71  Aligned_cols=139  Identities=15%  Similarity=0.169  Sum_probs=99.1

Q ss_pred             CCCceEEEEccCCcEEEE-------ECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCC-
Q 011333           82 GIEPYSVEVLPGGELLIL-------DSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDR-  153 (488)
Q Consensus        82 l~~P~GIaVd~dG~LYVa-------D~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~d-  153 (488)
                      +..|.+++++++|.||++       +..+++|+++++.+   +.+..+...  ...|         ....|.+|++|++ 
T Consensus        17 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~---g~~~~~~~~--~~~~---------~~~~~~~i~~~~~~   82 (314)
T 1pjx_A           17 IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKT---GKKTVICKP--EVNG---------YGGIPAGCQCDRDA   82 (314)
T ss_dssp             CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTT---CCEEEEECC--EETT---------EECCEEEEEECSSS
T ss_pred             CCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCC---CcEEEEEec--ccCC---------CCCCCceEEEecCC
Confidence            447999999999999999       87788999999764   344444321  0001         1356999999999 


Q ss_pred             CcEEEEECCCCEEEEEc-CCCcEEE-eCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCC-----------
Q 011333          154 GNIYIADTMNMAIRKIS-DSGVTTI-AGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGN-----------  220 (488)
Q Consensus       154 G~LYVAD~~N~rIrkid-~ggVttI-aGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN-----------  220 (488)
                      |+|||++..+ .|.+++ ++.+..+ .....            ...+..|++|+ ++++|+|||++..+           
T Consensus        83 g~l~v~~~~~-~l~~~d~~g~~~~~~~~~~~------------~~~~~~~~~i~-~d~~g~l~v~~~~~~~~~~~~~~~~  148 (314)
T 1pjx_A           83 NQLFVADMRL-GLLVVQTDGTFEEIAKKDSE------------GRRMQGCNDCA-FDYEGNLWITAPAGEVAPADYTRSM  148 (314)
T ss_dssp             SEEEEEETTT-EEEEEETTSCEEECCSBCTT------------SCBCBCCCEEE-ECTTSCEEEEECBCBCTTSCCCBTT
T ss_pred             CcEEEEECCC-CEEEEeCCCCEEEEEeccCC------------CccccCCcCEE-ECCCCCEEEEecCcccccccccccc
Confidence            9999999754 899998 6445544 32110            11346799999 79999999999865           


Q ss_pred             ----CeEEEEEcCCCceEEeccCCCcceEEEE
Q 011333          221 ----RAIREIQLHFDDCAYQYGSSFPLGIAVL  248 (488)
Q Consensus       221 ----~rIrkI~~~g~~~~~~~~~g~P~GIav~  248 (488)
                          +.|++++..+...........|.+++++
T Consensus       149 ~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~  180 (314)
T 1pjx_A          149 QEKFGSIYCFTTDGQMIQVDTAFQFPNGIAVR  180 (314)
T ss_dssp             SSSCEEEEEECTTSCEEEEEEEESSEEEEEEE
T ss_pred             cCCCCeEEEECCCCCEEEeccCCCCcceEEEe
Confidence                6899999875443333444567888876

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.00  E-value=1.5e-08  Score=101.34  Aligned_cols=157  Identities=13%  Similarity=0.090  Sum_probs=100.2

Q ss_pred             CCCCCceEEEEccCCcEEEEECC-----CCeEEEEeCCCCcccc-cEEEecCCCCccccCCCcccccccCCcceEEEcC-
Q 011333           80 KLGIEPYSVEVLPGGELLILDSA-----NSNLYRISSSLSLYSR-PKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDD-  152 (488)
Q Consensus        80 ~~l~~P~GIaVd~dG~LYVaD~~-----n~rI~kid~~g~~~g~-i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~-  152 (488)
                      ..+..|++|++|++|+|||+|.+     .++|+++++.+   ++ +.++.-.. ..         ......|++|++|+ 
T Consensus        64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~t---g~~~~~~~~~~-~~---------~~~~~~~~~v~vd~~  130 (343)
T 2qe8_A           64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLN---NQLSRVIYLPP-PI---------TLSNSFVNDLAVDLI  130 (343)
T ss_dssp             CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTT---TEEEEEEECCT-TT---------SCTTCCCCEEEEETT
T ss_pred             cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCC---CeEEEEEECCh-hh---------cccccccceEEEecC
Confidence            34669999999999999999987     58999999875   33 23332110 00         01245789999996 


Q ss_pred             CCcEEEEEC---CCCEEEEEc--CCCcEEEeCCccCCCC-C---CCCCCc-----ccc----cCCCCCeeEEECCCC-eE
Q 011333          153 RGNIYIADT---MNMAIRKIS--DSGVTTIAGGKWGRGG-G---HVDGPS-----EDA----KFSNDFDVVYIGSSC-SL  213 (488)
Q Consensus       153 dG~LYVAD~---~N~rIrkid--~ggVttIaGg~~g~~~-g---~~dG~~-----~~a----~f~~P~gIa~vd~~G-~L  213 (488)
                      +|.+||+|.   .++.|.+++  .+.+..+..+...... .   ..+|..     .+.    ....|++|+ ++++| .|
T Consensus       131 ~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia-~s~dg~~l  209 (343)
T 2qe8_A          131 HNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIV-LDAENEWL  209 (343)
T ss_dssp             TTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEE-ECTTSCEE
T ss_pred             CCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeE-eccCCCEE
Confidence            578999999   889999999  3555444432100000 0   001100     000    114689999 56666 79


Q ss_pred             EEEECCCCeEEEEEcCC----C--------ceEEeccCCCcceEEEEec
Q 011333          214 LVIDRGNRAIREIQLHF----D--------DCAYQYGSSFPLGIAVLLA  250 (488)
Q Consensus       214 YVaD~gN~rIrkI~~~g----~--------~~~~~~~~g~P~GIav~~g  250 (488)
                      |+++...++|++++...    .        ........+.|.||+++..
T Consensus       210 y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~  258 (343)
T 2qe8_A          210 YLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKD  258 (343)
T ss_dssp             EEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTT
T ss_pred             EEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCC
Confidence            99999999999998531    1        0011123457999999954

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=98.98  E-value=5.5e-09  Score=107.52  Aligned_cols=145  Identities=11%  Similarity=0.091  Sum_probs=101.3

Q ss_pred             CCceEEEEcc--CC--cEEEEECC--CCe--EEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCC
Q 011333           83 IEPYSVEVLP--GG--ELLILDSA--NSN--LYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRG  154 (488)
Q Consensus        83 ~~P~GIaVd~--dG--~LYVaD~~--n~r--I~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG  154 (488)
                      .+|+||.+..  +|  .|||+|+.  +++  |++++.++    ...+++....+           .+|+.|+++++|++|
T Consensus       112 f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~----~~~~~~~~~~g-----------~~~~~pND~~v~~~G  176 (355)
T 3sre_A          112 FNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEE----KSLLHLKTIRH-----------KLLPSVNDIVAVGPE  176 (355)
T ss_dssp             CCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTT----TEEEEEEEECC-----------TTCSSEEEEEEEETT
T ss_pred             eeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCC----CEEEEEecccc-----------CCCCCCceEEEeCCC
Confidence            4899999965  45  59999987  344  56666664    23344433211           248999999999999


Q ss_pred             cEEEEEC-----------------CCCEEEEEcCCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEE
Q 011333          155 NIYIADT-----------------MNMAIRKISDSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVID  217 (488)
Q Consensus       155 ~LYVAD~-----------------~N~rIrkid~ggVttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD  217 (488)
                      .+||++.                 ...+|.+++.+.++.++.+                 +..|+||++.++...|||+|
T Consensus       177 ~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~~~~~~~~~-----------------l~~pNGia~spDg~~lYvad  239 (355)
T 3sre_A          177 HFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRVVAEG-----------------FDFANGINISPDGKYVYIAE  239 (355)
T ss_dssp             EEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTTCCEEEEEE-----------------ESSEEEEEECTTSSEEEEEE
T ss_pred             CEEecCCcEeCCcccccchhhccCCccEEEEEECCeEEEeecC-----------------CcccCcceECCCCCEEEEEe
Confidence            9999875                 2467888887677666532                 66899999544444899999


Q ss_pred             CCCCeEEEEEcCCCceE----EeccCCCcceEEEEecCCceEEEEEEEE
Q 011333          218 RGNRAIREIQLHFDDCA----YQYGSSFPLGIAVLLAAGFFGYMLALLQ  262 (488)
Q Consensus       218 ~gN~rIrkI~~~g~~~~----~~~~~g~P~GIav~~g~g~~Gy~~a~l~  262 (488)
                      +..++|++++.+.+...    .....+.|+||+++..   .|.+|+...
T Consensus       240 t~~~~I~~~~~~~~g~l~~~~~~~~~g~PDGi~vD~e---~G~lwva~~  285 (355)
T 3sre_A          240 LLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPV---TGDLWVGCH  285 (355)
T ss_dssp             GGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTT---TCCEEEEEE
T ss_pred             CCCCeEEEEEECCCCcEecCEEEeCCCCCceEEEeCC---CCcEEEEec
Confidence            99999999998743211    2233478999999952   245555444

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=98.89  E-value=3.6e-08  Score=94.76  Aligned_cols=132  Identities=14%  Similarity=0.130  Sum_probs=95.4

Q ss_pred             CCceEEEEccCCcEEEEECCC---------------CeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcce
Q 011333           83 IEPYSVEVLPGGELLILDSAN---------------SNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKG  147 (488)
Q Consensus        83 ~~P~GIaVd~dG~LYVaD~~n---------------~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~G  147 (488)
                      ..|.+|+++++|+|||++..+               +.|+++++++    .+..+...                +..|++
T Consensus       117 ~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g----~~~~~~~~----------------~~~~~~  176 (314)
T 1pjx_A          117 QGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDG----QMIQVDTA----------------FQFPNG  176 (314)
T ss_dssp             BCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTS----CEEEEEEE----------------ESSEEE
T ss_pred             cCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCCC----CEEEeccC----------------CCCcce
Confidence            469999999999999999765               6899999873    33333321                456899


Q ss_pred             EEEc----CCC-cEEEEECCCCEEEEEc-C--CCcE---EEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEE
Q 011333          148 LTVD----DRG-NIYIADTMNMAIRKIS-D--SGVT---TIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVI  216 (488)
Q Consensus       148 IAvD----~dG-~LYVAD~~N~rIrkid-~--ggVt---tIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVa  216 (488)
                      |+++    ++| .|||+|..+++|.+++ +  +.+.   .+.... +            ..+..|.+|+ ++++|+|||+
T Consensus       177 i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~-~------------~~~~~p~~i~-~d~~G~l~v~  242 (314)
T 1pjx_A          177 IAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIP-G------------THEGGADGMD-FDEDNNLLVA  242 (314)
T ss_dssp             EEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECC-C------------CSSCEEEEEE-EBTTCCEEEE
T ss_pred             EEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECC-C------------CCCCCCCceE-ECCCCCEEEE
Confidence            9999    999 6999999999999998 2  3332   222110 0            0124688998 7999999999


Q ss_pred             ECCCCeEEEEEcC-CCceEE-eccCCCcceEEEE
Q 011333          217 DRGNRAIREIQLH-FDDCAY-QYGSSFPLGIAVL  248 (488)
Q Consensus       217 D~gN~rIrkI~~~-g~~~~~-~~~~g~P~GIav~  248 (488)
                      +..++.|.++++. +..... ......|.+++++
T Consensus       243 ~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~  276 (314)
T 1pjx_A          243 NWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFK  276 (314)
T ss_dssp             EETTTEEEEECTTCBSCSEEEECSSSCEEEEEEC
T ss_pred             EcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEEC
Confidence            9999999999988 543332 2233567788874

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=98.86  E-value=7.7e-08  Score=97.88  Aligned_cols=166  Identities=13%  Similarity=0.090  Sum_probs=106.0

Q ss_pred             cCCceeEEeecCCCCCCCceEEEEccCCc-EEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCc
Q 011333           67 ESGYTVETVFDGSKLGIEPYSVEVLPGGE-LLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHP  145 (488)
Q Consensus        67 ~dG~~~~~~~~G~~~l~~P~GIaVd~dG~-LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P  145 (488)
                      .+|+.++....+   +..|.+|+++++|+ |||++.. ++|++++.++..   ...+++...-.         ......|
T Consensus         5 p~g~~~~~va~~---l~~P~~i~~~pdG~~l~V~e~~-G~i~~~~~~g~~---~~~~~~~~~v~---------~~g~~g~   68 (353)
T 2g8s_A            5 PATVNVEVLQDK---LDHPWALAFLPDNHGMLITLRG-GELRHWQAGKGL---SAPLSGVPDVW---------AHGQGGL   68 (353)
T ss_dssp             -CCSEEEEEEEE---ESSEEEEEECSTTCCEEEEETT-TEEEEEETTTEE---CCCCBSCCCCC---------CSTTCSE
T ss_pred             CCCcEEEEEECC---CCCcEEEEEcCCCCEEEEEeCC-ceEEEEeCCCce---eeEecCCcccc---------cCCCCCc
Confidence            356666666553   56999999999999 9999984 899999976421   11222211000         0113468


Q ss_pred             ceEEEcC----CCcEEEEECC-------CCEEEEEc-C-C--C---cEEEe-CCccCCCCCCCCCCcccccCCCCCeeEE
Q 011333          146 KGLTVDD----RGNIYIADTM-------NMAIRKIS-D-S--G---VTTIA-GGKWGRGGGHVDGPSEDAKFSNDFDVVY  206 (488)
Q Consensus       146 ~GIAvD~----dG~LYVAD~~-------N~rIrkid-~-g--g---VttIa-Gg~~g~~~g~~dG~~~~a~f~~P~gIa~  206 (488)
                      .||++++    +|.|||+++.       .++|.+++ + +  .   ..++. +...           .......+.+|+ 
T Consensus        69 ~gia~~pdf~~~g~lYv~~~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~-----------~~~~~h~~~~l~-  136 (353)
T 2g8s_A           69 LDVVLAPDFAQSRRIWLSYSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPK-----------LSTGNHFGGRLV-  136 (353)
T ss_dssp             EEEEECTTHHHHCEEEEEEEEECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSC-----------CBSSSCCCCCEE-
T ss_pred             eeEEECCCCCCCCEEEEEEeCCCCCCCceeEEEEEEECCCCCCCCceEEEEEECCC-----------CCCCcccCccEE-
Confidence            9999998    5899999865       46888886 2 2  1   22232 2110           012245688998 


Q ss_pred             ECCCCeEEEEECC-------------CCeEEEEEcCCC--------------ceEEeccCCCcceEEEEecCCceEEEEE
Q 011333          207 IGSSCSLLVIDRG-------------NRAIREIQLHFD--------------DCAYQYGSSFPLGIAVLLAAGFFGYMLA  259 (488)
Q Consensus       207 vd~~G~LYVaD~g-------------N~rIrkI~~~g~--------------~~~~~~~~g~P~GIav~~g~g~~Gy~~a  259 (488)
                      ++++|.|||+...             .++|.+|++++.              ...+..+...|.|++++..   .|.+++
T Consensus       137 ~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~---~g~l~~  213 (353)
T 2g8s_A          137 FDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPDDNPFIKESGVRAEIWSYGIRNPQGMAMNPW---SNALWL  213 (353)
T ss_dssp             ECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCCTTCTTTTSTTSCTTEEEECCSEEEEEEEETT---TTEEEE
T ss_pred             ECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCCCCCCCcCCCCCCccEEEEcCcCccceEEECC---CCCEEE
Confidence            7899999999633             368999999874              2234455566888988853   234554


Q ss_pred             EEEe
Q 011333          260 LLQR  263 (488)
Q Consensus       260 ~l~~  263 (488)
                      .-..
T Consensus       214 ~d~g  217 (353)
T 2g8s_A          214 NEHG  217 (353)
T ss_dssp             EEEC
T ss_pred             EecC
Confidence            4443

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.86  E-value=8e-08  Score=96.00  Aligned_cols=123  Identities=11%  Similarity=0.085  Sum_probs=86.4

Q ss_pred             CCceEEEEccCCcEEEEECC--C--CeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEE
Q 011333           83 IEPYSVEVLPGGELLILDSA--N--SNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYI  158 (488)
Q Consensus        83 ~~P~GIaVd~dG~LYVaD~~--n--~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYV  158 (488)
                      ..|.+|+++++|++||+...  .  .+|.+++ +    +.+..+....  .    +   ....|..|.||++|++|+|||
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~-~----g~~~~~p~~~--~----~---~~~~~~~p~gv~~d~~g~L~v   82 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELT-Q----DGLIPFPPQS--G----N---AIITFDTVLGIKSDGNGIVWM   82 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEE-T----TEEEESCCCC--S----S---CCCCCSCEEEEEECSSSEEEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEEC-C----CCeecCCCcc--c----C---cccceeEeeEEEEcCCCcEEE
Confidence            47999999999999999642  2  3899998 5    3333332110  0    0   113488999999999999999


Q ss_pred             EECC-----CCEEEEEc-C-CC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEEC-CCCeEEEEEC---CCCeEEEE
Q 011333          159 ADTM-----NMAIRKIS-D-SG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIG-SSCSLLVIDR---GNRAIREI  226 (488)
Q Consensus       159 AD~~-----N~rIrkid-~-gg-VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd-~~G~LYVaD~---gN~rIrkI  226 (488)
                      +|.+     .++|.+++ . +. +.++......           ......|++|+ ++ .++.+||+|.   .++.|.++
T Consensus        83 ~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~-----------~~~~~~~~~v~-vd~~~g~~yvtd~~~~~~~~i~v~  150 (343)
T 2qe8_A           83 LDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPI-----------TLSNSFVNDLA-VDLIHNFVYISDPAPDDKAALIRV  150 (343)
T ss_dssp             EECHHHHTSCCEEEEEETTTTEEEEEEECCTTT-----------SCTTCCCCEEE-EETTTTEEEEEECCSGGGCEEEEE
T ss_pred             EcCCCCcCCCCeEEEEECCCCeEEEEEECChhh-----------cccccccceEE-EecCCCEEEEEcCccCCCCeEEEE
Confidence            9987     58999999 3 55 3444321110           01234689999 55 5689999999   88999999


Q ss_pred             EcCCC
Q 011333          227 QLHFD  231 (488)
Q Consensus       227 ~~~g~  231 (488)
                      ++...
T Consensus       151 d~~~g  155 (343)
T 2qe8_A          151 DLQTG  155 (343)
T ss_dssp             ETTTC
T ss_pred             ECCCC
Confidence            98743

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=98.82  E-value=1.5e-07  Score=91.84  Aligned_cols=136  Identities=9%  Similarity=0.038  Sum_probs=95.3

Q ss_pred             CCceEEEEccCCcEEEEECC------CCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCc-
Q 011333           83 IEPYSVEVLPGGELLILDSA------NSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-  155 (488)
Q Consensus        83 ~~P~GIaVd~dG~LYVaD~~------n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~-  155 (488)
                      ..|.+++++++|+|||++..      ++.|++++.++   +.+..+...                +..|++|+++++|+ 
T Consensus       135 ~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~----------------~~~~~~i~~~~dg~~  195 (333)
T 2dg1_A          135 YCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDF---RTVTPIIQN----------------ISVANGIALSTDEKV  195 (333)
T ss_dssp             CCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTS---CCEEEEEEE----------------ESSEEEEEECTTSSE
T ss_pred             CcccceEECCCCCEEEEeccccccCCCceEEEEeCCC---CEEEEeecC----------------CCcccceEECCCCCE
Confidence            46899999999999999875      47899999875   233333221                45689999999996 


Q ss_pred             EEEEECCCCEEEEEc-C--CC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCC
Q 011333          156 IYIADTMNMAIRKIS-D--SG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFD  231 (488)
Q Consensus       156 LYVAD~~N~rIrkid-~--gg-VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g~  231 (488)
                      |||+|..+++|.+++ +  +. +..+....... .         .....|.+|+ ++++|+|||++.++++|+++++.+.
T Consensus       196 l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~-~---------~~~~~~~~i~-~d~~G~l~v~~~~~~~v~~~d~~g~  264 (333)
T 2dg1_A          196 LWVTETTANRLHRIALEDDGVTIQPFGATIPYY-F---------TGHEGPDSCC-IDSDDNLYVAMYGQGRVLVFNKRGY  264 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEE-C---------CSSSEEEEEE-EBTTCCEEEEEETTTEEEEECTTSC
T ss_pred             EEEEeCCCCeEEEEEecCCCcCcccccceEEEe-c---------CCCCCCCceE-ECCCCCEEEEEcCCCEEEEECCCCC
Confidence            999999889999998 2  33 33221000000 0         0013688898 7999999999999999999998765


Q ss_pred             ceEEeccC-C------CcceEEEE
Q 011333          232 DCAYQYGS-S------FPLGIAVL  248 (488)
Q Consensus       232 ~~~~~~~~-g------~P~GIav~  248 (488)
                      ........ .      .|.++++.
T Consensus       265 ~~~~~~~~~~~~g~~~~~~~~~~~  288 (333)
T 2dg1_A          265 PIGQILIPGRDEGHMLRSTHPQFI  288 (333)
T ss_dssp             EEEEEECTTGGGTCSCBCCEEEEC
T ss_pred             EEEEEEcCCCccccccCcceEEEC
Confidence            43332211 1      57888885

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=98.82  E-value=1.3e-07  Score=93.94  Aligned_cols=135  Identities=10%  Similarity=0.054  Sum_probs=97.6

Q ss_pred             CCCceEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEEC
Q 011333           82 GIEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADT  161 (488)
Q Consensus        82 l~~P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~  161 (488)
                      +..|.+|+++++|.|||++..++.|.++|+.+.   ++......  +.        ...++..|.+|++ .++.|||++.
T Consensus        83 ~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~---~~~~~i~~--g~--------~~~~~~~p~~i~~-~~~~lyv~~~  148 (328)
T 3dsm_A           83 FTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTY---EITGYIEC--PD--------MDMESGSTEQMVQ-YGKYVYVNCW  148 (328)
T ss_dssp             CSSEEEEEEEETTEEEEEEBSCSEEEEEETTTT---EEEEEEEC--TT--------CCTTTCBCCCEEE-ETTEEEEEEC
T ss_pred             CCCCcEEEEeCCCeEEEEECCCCeEEEEECCCC---eEEEEEEc--CC--------ccccCCCcceEEE-ECCEEEEEcC
Confidence            458999999889999999977889999999863   33322211  10        0123567999999 5789999998


Q ss_pred             C-CCEEEEEc--CCCc-EEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCC----------CeEEEEE
Q 011333          162 M-NMAIRKIS--DSGV-TTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGN----------RAIREIQ  227 (488)
Q Consensus       162 ~-N~rIrkid--~ggV-ttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN----------~rIrkI~  227 (488)
                      + .+.|.+||  .+.+ .++..+                  ..|.+|+ ++++|++||++.++          +.|.+|+
T Consensus       149 ~~~~~v~viD~~t~~~~~~i~~g------------------~~p~~i~-~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id  209 (328)
T 3dsm_A          149 SYQNRILKIDTETDKVVDELTIG------------------IQPTSLV-MDKYNKMWTITDGGYEGSPYGYEAPSLYRID  209 (328)
T ss_dssp             TTCCEEEEEETTTTEEEEEEECS------------------SCBCCCE-ECTTSEEEEEBCCBCTTCSSCBCCCEEEEEE
T ss_pred             CCCCEEEEEECCCCeEEEEEEcC------------------CCccceE-EcCCCCEEEEECCCccCCccccCCceEEEEE
Confidence            4 89999999  3443 333321                  2588998 78899999999886          8999999


Q ss_pred             cCCCceEE-ecc--CCCcceEEEEe
Q 011333          228 LHFDDCAY-QYG--SSFPLGIAVLL  249 (488)
Q Consensus       228 ~~g~~~~~-~~~--~g~P~GIav~~  249 (488)
                      +....... ...  ...|.+++++.
T Consensus       210 ~~t~~v~~~~~~~~g~~p~~la~~~  234 (328)
T 3dsm_A          210 AETFTVEKQFKFKLGDWPSEVQLNG  234 (328)
T ss_dssp             TTTTEEEEEEECCTTCCCEEEEECT
T ss_pred             CCCCeEEEEEecCCCCCceeEEEec
Confidence            87654432 211  23699999985

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=98.81  E-value=1.4e-07  Score=96.69  Aligned_cols=163  Identities=18%  Similarity=0.168  Sum_probs=107.8

Q ss_pred             eeEEeecCCCCCCCceEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEE
Q 011333           71 TVETVFDGSKLGIEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTV  150 (488)
Q Consensus        71 ~~~~~~~G~~~l~~P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAv  150 (488)
                      ..+....+   +..|++|++.+||.|||++...++|++++.++   +....+.+...-.         ......|.|||+
T Consensus        23 ~~~~va~g---L~~P~~ia~~pdG~llVter~~G~I~~v~~~~---g~~~~v~~~~~v~---------~~g~~GllGia~   87 (347)
T 3das_A           23 VLRTVATG---LNSPWGLAPLPGGDLLVSSRDEATITRVDAKT---GRKTELGEVPGVS---------PSGEGGLLGIAL   87 (347)
T ss_dssp             EEEEEECC---CSSEEEEEECTTSCEEEEETTTCEEEEECTTT---CCEEEEEECTTCC---------CBTTBSEEEEEE
T ss_pred             eeEEeecC---CCCceEEEEcCCCcEEEEEecCCEEEEEECCC---CcEeeecccCcee---------ecCCCCceeeEe
Confidence            34444443   56999999999999999999889999998764   3334443321000         011456899999


Q ss_pred             cC----CCcEEEEEC--CCCEEEEEc-CC------C---cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEE
Q 011333          151 DD----RGNIYIADT--MNMAIRKIS-DS------G---VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLL  214 (488)
Q Consensus       151 D~----dG~LYVAD~--~N~rIrkid-~g------g---VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LY  214 (488)
                      ++    +|.|||+.+  ..++|.++. ++      .   ..+|...-..            ........|+ ++++|.||
T Consensus        88 ~Pdf~~~g~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~------------~~~H~g~~l~-fgpDG~Ly  154 (347)
T 3das_A           88 SPDYASDHMVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPK------------GVIHNGGRIA-FGPDKMLY  154 (347)
T ss_dssp             CTTHHHHCEEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECC------------CSSCCCCCEE-ECTTSCEE
T ss_pred             ccccccCCEEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCC------------CCCccCcccc-CCCCCCEE
Confidence            98    488999764  457888887 32      1   2333321100            1234567798 78999999


Q ss_pred             EEEC-------------CCCeEEEEEcCCC---------ceEEeccCCCcceEEEEecCCceEEEEEEEEecc
Q 011333          215 VIDR-------------GNRAIREIQLHFD---------DCAYQYGSSFPLGIAVLLAAGFFGYMLALLQRRV  265 (488)
Q Consensus       215 VaD~-------------gN~rIrkI~~~g~---------~~~~~~~~g~P~GIav~~g~g~~Gy~~a~l~~~~  265 (488)
                      |+--             ..++|.+|+++|.         ...+..+...|.|++++..    |.+|+.-..+.
T Consensus       155 vt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nPf~~~~i~a~G~RNp~Gla~dp~----G~L~~~d~g~~  223 (347)
T 3das_A          155 AGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGNPFPGSPVYSYGHRNVQGLAWDDK----QRLFASEFGQD  223 (347)
T ss_dssp             EECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTCSSTTCCEEEBCCSBCCEEEECTT----CCEEEEECCSS
T ss_pred             EEECCCCCCccccCCCCCCCEEEEEeCCCCccCCCCCCCCeEEeeCCCCcceEEECCC----CCEEEEecCCC
Confidence            9942             3589999999875         1244566667999999852    55666655543

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=98.79  E-value=1.9e-07  Score=91.05  Aligned_cols=134  Identities=16%  Similarity=0.169  Sum_probs=96.3

Q ss_pred             CCceEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEECC
Q 011333           83 IEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTM  162 (488)
Q Consensus        83 ~~P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~  162 (488)
                      ..|.+++++++|+||+++..++.|++++.++   +.+..+....               -..|.+|++|++|+|||++..
T Consensus        45 ~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~---~~~~~~~~~~---------------~~~~~~i~~~~dg~l~v~~~~  106 (333)
T 2dg1_A           45 LQLEGLNFDRQGQLFLLDVFEGNIFKINPET---KEIKRPFVSH---------------KANPAAIKIHKDGRLFVCYLG  106 (333)
T ss_dssp             CCEEEEEECTTSCEEEEETTTCEEEEECTTT---CCEEEEEECS---------------SSSEEEEEECTTSCEEEEECT
T ss_pred             ccccCcEECCCCCEEEEECCCCEEEEEeCCC---CcEEEEeeCC---------------CCCcceEEECCCCcEEEEeCC
Confidence            3689999999999999999899999999886   3344332110               235899999999999999987


Q ss_pred             C----CEEEEEc-CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECC------CCeEEEEEcCC
Q 011333          163 N----MAIRKIS-DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRG------NRAIREIQLHF  230 (488)
Q Consensus       163 N----~rIrkid-~gg-VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~g------N~rIrkI~~~g  230 (488)
                      +    +.|.+++ +++ +..+.....              ....|++|+ ++++|+|||++..      +..|++++..+
T Consensus       107 ~~~~~~~i~~~d~~~~~~~~~~~~~~--------------~~~~~~~i~-~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~  171 (333)
T 2dg1_A          107 DFKSTGGIFAATENGDNLQDIIEDLS--------------TAYCIDDMV-FDSKGGFYFTDFRGYSTNPLGGVYYVSPDF  171 (333)
T ss_dssp             TSSSCCEEEEECTTSCSCEEEECSSS--------------SCCCEEEEE-ECTTSCEEEEECCCBTTBCCEEEEEECTTS
T ss_pred             CCCCCceEEEEeCCCCEEEEEEccCc--------------cCCcccceE-ECCCCCEEEEeccccccCCCceEEEEeCCC
Confidence            6    7999999 444 443332100              124688998 7889999999975      57899998875


Q ss_pred             CceE-EeccCCCcceEEEEe
Q 011333          231 DDCA-YQYGSSFPLGIAVLL  249 (488)
Q Consensus       231 ~~~~-~~~~~g~P~GIav~~  249 (488)
                      .... .......|.+++++.
T Consensus       172 ~~~~~~~~~~~~~~~i~~~~  191 (333)
T 2dg1_A          172 RTVTPIIQNISVANGIALST  191 (333)
T ss_dssp             CCEEEEEEEESSEEEEEECT
T ss_pred             CEEEEeecCCCcccceEECC
Confidence            4332 223334577777764

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=98.78  E-value=1.3e-07  Score=100.06  Aligned_cols=158  Identities=18%  Similarity=0.230  Sum_probs=105.6

Q ss_pred             ccCCceeEEeecCCCCCCCceEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCc
Q 011333           66 FESGYTVETVFDGSKLGIEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHP  145 (488)
Q Consensus        66 ~~dG~~~~~~~~G~~~l~~P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P  145 (488)
                      ..+|+.++....+   +..|++|+++++|+|||++...++|++++..+   +....++.-......       ..-...+
T Consensus        13 ~~~gf~~~~~a~~---l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~---g~~~~~~~~~~~~~~-------~~g~~Gl   79 (454)
T 1cru_A           13 KSENFDKKVILSN---LNKPHALLWGPDNQIWLTERATGKILRVNPES---GSVKTVFQVPEIVND-------ADGQNGL   79 (454)
T ss_dssp             CCTTSCEEEEECC---CSSEEEEEECTTSCEEEEETTTCEEEEECTTT---CCEEEEEECTTCCCC-------TTSSCSE
T ss_pred             CCCCeEEEEEECC---CCCceEEEEcCCCcEEEEEcCCCEEEEEECCC---CcEeEEecCCccccc-------cCCCCce
Confidence            3466777776654   66999999999999999999878999998754   344444432111100       0013457


Q ss_pred             ceEEEcC----CCcEEEEECC------------CCEEEEEc-C-C--Cc---EEEeCCccCCCCCCCCCCcccccCCCCC
Q 011333          146 KGLTVDD----RGNIYIADTM------------NMAIRKIS-D-S--GV---TTIAGGKWGRGGGHVDGPSEDAKFSNDF  202 (488)
Q Consensus       146 ~GIAvD~----dG~LYVAD~~------------N~rIrkid-~-g--gV---ttIaGg~~g~~~g~~dG~~~~a~f~~P~  202 (488)
                      .|||+++    +|.|||+++.            ..+|.+++ + +  .+   .++...-..            .....+.
T Consensus        80 lgia~~Pdf~~~g~lYv~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~------------~~~H~~~  147 (454)
T 1cru_A           80 LGFAFHPDFKNNPYIYISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPS------------SKDHQSG  147 (454)
T ss_dssp             EEEEECTTTTTSCEEEEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECC------------CSSCCEE
T ss_pred             eEEEECCCcCcCCEEEEEEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCC------------CCCCCCC
Confidence            7999998    7899999964            46888887 2 2  12   233321000            1245688


Q ss_pred             eeEEECCCCeEEEEEC--C------------------------------CCeEEEEEcCCC------------ceEEecc
Q 011333          203 DVVYIGSSCSLLVIDR--G------------------------------NRAIREIQLHFD------------DCAYQYG  238 (488)
Q Consensus       203 gIa~vd~~G~LYVaD~--g------------------------------N~rIrkI~~~g~------------~~~~~~~  238 (488)
                      +|+ ++++|.|||+-.  +                              .++|.+|+++|.            ...+..+
T Consensus       148 ~l~-f~pDG~Lyv~~Gd~~~~~~~~~~~~~~~~~~p~~~~~~aq~~~~~~G~IlRi~~dG~ip~~Npf~~~~~~ei~a~G  226 (454)
T 1cru_A          148 RLV-IGPDQKIYYTIGDQGRNQLAYLFLPNQAQHTPTQQELNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTLG  226 (454)
T ss_dssp             EEE-ECTTSCEEEEECCTTTTSGGGTTSCCCTTCCCCHHHHHTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEEEBC
T ss_pred             eEe-ECCCCeEEEEECCCCCCCccccccccccccccccccccccCCCCCCeeEEEEeCCCCCCCCCCCCCCCcceEEEEC
Confidence            999 799999999843  2                              368999999875            1234556


Q ss_pred             CCCcceEEEEe
Q 011333          239 SSFPLGIAVLL  249 (488)
Q Consensus       239 ~g~P~GIav~~  249 (488)
                      ...|.|++++.
T Consensus       227 ~RNp~gla~dp  237 (454)
T 1cru_A          227 HRNPQGLAFTP  237 (454)
T ss_dssp             CSEEEEEEECT
T ss_pred             CCCcceEEECC
Confidence            66788888885

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=98.71  E-value=1.9e-07  Score=92.80  Aligned_cols=127  Identities=13%  Similarity=0.097  Sum_probs=89.8

Q ss_pred             CceEEEEccCCcEEEEECC-CCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEECC
Q 011333           84 EPYSVEVLPGGELLILDSA-NSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTM  162 (488)
Q Consensus        84 ~P~GIaVd~dG~LYVaD~~-n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~  162 (488)
                      .|.+|++ .++.|||++.+ .+.|.+||..+.   .+...+..                -..|.+|++|++|++||++..
T Consensus       132 ~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~---~~~~~i~~----------------g~~p~~i~~~~dG~l~v~~~~  191 (328)
T 3dsm_A          132 STEQMVQ-YGKYVYVNCWSYQNRILKIDTETD---KVVDELTI----------------GIQPTSLVMDKYNKMWTITDG  191 (328)
T ss_dssp             BCCCEEE-ETTEEEEEECTTCCEEEEEETTTT---EEEEEEEC----------------SSCBCCCEECTTSEEEEEBCC
T ss_pred             CcceEEE-ECCEEEEEcCCCCCEEEEEECCCC---eEEEEEEc----------------CCCccceEEcCCCCEEEEECC
Confidence            7999999 57899999984 889999998753   22222111                135899999999999999987


Q ss_pred             C----------CEEEEEcC--CCcE-EEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcC
Q 011333          163 N----------MAIRKISD--SGVT-TIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLH  229 (488)
Q Consensus       163 N----------~rIrkid~--ggVt-tIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~  229 (488)
                      +          +.|.+||.  +.+. ++. ...+               ..|++|++.++.+.|||++.   .|.+|+..
T Consensus       192 ~~~~~~~~~~~~~v~~id~~t~~v~~~~~-~~~g---------------~~p~~la~~~d~~~lyv~~~---~v~~~d~~  252 (328)
T 3dsm_A          192 GYEGSPYGYEAPSLYRIDAETFTVEKQFK-FKLG---------------DWPSEVQLNGTRDTLYWINN---DIWRMPVE  252 (328)
T ss_dssp             BCTTCSSCBCCCEEEEEETTTTEEEEEEE-CCTT---------------CCCEEEEECTTSCEEEEESS---SEEEEETT
T ss_pred             CccCCccccCCceEEEEECCCCeEEEEEe-cCCC---------------CCceeEEEecCCCEEEEEcc---EEEEEECC
Confidence            6          89999993  3343 332 1100               26899995445678999986   89999987


Q ss_pred             CCceEE---ec-cCCCcceEEEEe
Q 011333          230 FDDCAY---QY-GSSFPLGIAVLL  249 (488)
Q Consensus       230 g~~~~~---~~-~~g~P~GIav~~  249 (488)
                      ......   .. +...|.||+++.
T Consensus       253 t~~~~~~~~~~~~~~~p~gi~vdp  276 (328)
T 3dsm_A          253 ADRVPVRPFLEFRDTKYYGLTVNP  276 (328)
T ss_dssp             CSSCCSSCSBCCCSSCEEEEEECT
T ss_pred             CCceeeeeeecCCCCceEEEEEcC
Confidence            543321   11 135799999985

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=98.68  E-value=2.1e-07  Score=94.86  Aligned_cols=128  Identities=13%  Similarity=0.093  Sum_probs=82.4

Q ss_pred             CCCceEEEEccC----CcEEEEECC---C----CeEEEEeCCCC--cccccEEEecCCCCccccCCCcccccccCCcceE
Q 011333           82 GIEPYSVEVLPG----GELLILDSA---N----SNLYRISSSLS--LYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGL  148 (488)
Q Consensus        82 l~~P~GIaVd~d----G~LYVaD~~---n----~rI~kid~~g~--~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GI  148 (488)
                      ...|.||+++++    |.|||++..   +    ++|.+++.++.  ......+++...   .        ....+.|.+|
T Consensus        72 ~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~---~--------~~~~h~~~~l  140 (354)
T 3a9g_A           72 EAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGI---P--------GAYIHNGGRI  140 (354)
T ss_dssp             TCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEE---E--------CCSSCCCCCE
T ss_pred             CCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcC---C--------CCCCcCCceE
Confidence            347999999996    899999864   3    79999997753  111222332210   0        0125678999


Q ss_pred             EEcCCCcEEEEECC-------------CCEEEEEc-CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECC-CCeE
Q 011333          149 TVDDRGNIYIADTM-------------NMAIRKIS-DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGS-SCSL  213 (488)
Q Consensus       149 AvD~dG~LYVAD~~-------------N~rIrkid-~ggVttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~-~G~L  213 (488)
                      +++++|.|||++..             +.+|.+|+ ++.+.  .+.+      +........-+.+|++|+ +++ +|.|
T Consensus       141 ~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p--~~np------f~~~~i~a~G~rnp~Gla-~d~~~g~l  211 (354)
T 3a9g_A          141 RFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPP--ADNP------FPNSPIWSYGHRNPQGID-WHRASGVM  211 (354)
T ss_dssp             EECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCC--TTSS------STTCCEEEECCSCCCEEE-ECTTTCCE
T ss_pred             EECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCC--CCCC------CCCCcEEEEccCCcceEE-EeCCCCCE
Confidence            99999999999642             35899998 54421  0000      000011112367899999 677 8999


Q ss_pred             EEEECCCCe---EEEEEcC
Q 011333          214 LVIDRGNRA---IREIQLH  229 (488)
Q Consensus       214 YVaD~gN~r---IrkI~~~  229 (488)
                      ||+|.+.++   |..|...
T Consensus       212 ~v~d~g~~~~dei~~i~~G  230 (354)
T 3a9g_A          212 VATEHGPVGHDEVNIILKG  230 (354)
T ss_dssp             EEEECCSSSCCEEEEECTT
T ss_pred             EEEecCCCCCcEEEEecCC
Confidence            999998765   6666543

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.64  E-value=7.6e-07  Score=88.35  Aligned_cols=130  Identities=13%  Similarity=0.154  Sum_probs=90.5

Q ss_pred             CCceEEEEccCCcEEEEECC------CCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCc-
Q 011333           83 IEPYSVEVLPGGELLILDSA------NSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-  155 (488)
Q Consensus        83 ~~P~GIaVd~dG~LYVaD~~------n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~-  155 (488)
                      ..+.+++++++|+|||++..      .+.|++++ +    +.+..+...                +..|++|+++++|+ 
T Consensus       134 ~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~-~----g~~~~~~~~----------------~~~~~~i~~s~dg~~  192 (326)
T 2ghs_A          134 NRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA-K----GKVTKLFAD----------------ISIPNSICFSPDGTT  192 (326)
T ss_dssp             EEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE-T----TEEEEEEEE----------------ESSEEEEEECTTSCE
T ss_pred             CCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe-C----CcEEEeeCC----------------CcccCCeEEcCCCCE
Confidence            46889999999999998753      46899998 5    344443221                44689999999995 


Q ss_pred             EEEEECCCCEEEEEc-C--CC--c---EEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEE
Q 011333          156 IYIADTMNMAIRKIS-D--SG--V---TTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQ  227 (488)
Q Consensus       156 LYVAD~~N~rIrkid-~--gg--V---ttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~  227 (488)
                      ||++|+.+++|.+++ +  ++  +   ..+....              .....|.+++ +|.+|+|||++.++++|.+++
T Consensus       193 lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~--------------~~~~~p~gi~-~d~~G~lwva~~~~~~v~~~d  257 (326)
T 2ghs_A          193 GYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDST--------------GIKGGMDGSV-CDAEGHIWNARWGEGAVDRYD  257 (326)
T ss_dssp             EEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECT--------------TSSSEEEEEE-ECTTSCEEEEEETTTEEEEEC
T ss_pred             EEEEECCCCEEEEEEcccccCCcccCceEEEECC--------------CCCCCCCeeE-ECCCCCEEEEEeCCCEEEEEC
Confidence            999999999999998 3  22  1   1221100              0112578898 799999999999889999999


Q ss_pred             cCCCceEEe-ccCCCcceEEEE
Q 011333          228 LHFDDCAYQ-YGSSFPLGIAVL  248 (488)
Q Consensus       228 ~~g~~~~~~-~~~g~P~GIav~  248 (488)
                      +.+...... .....|.++++.
T Consensus       258 ~~g~~~~~i~~~~~~~~~~af~  279 (326)
T 2ghs_A          258 TDGNHIARYEVPGKQTTCPAFI  279 (326)
T ss_dssp             TTCCEEEEEECSCSBEEEEEEE
T ss_pred             CCCCEEEEEECCCCCcEEEEEe
Confidence            876543322 222245566655

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=98.64  E-value=1.7e-06  Score=88.23  Aligned_cols=132  Identities=19%  Similarity=0.165  Sum_probs=86.1

Q ss_pred             CceEEEE---ccCCcEEE-EEC------------CCCeEEEEeCCCCcccccEEEecCCCCccccCCC--cccccccCCc
Q 011333           84 EPYSVEV---LPGGELLI-LDS------------ANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDG--KPREARMNHP  145 (488)
Q Consensus        84 ~P~GIaV---d~dG~LYV-aD~------------~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG--~a~~a~Ln~P  145 (488)
                      .|.||.+   |++|.|+| +|.            +.+.|.++++.+..-++....+.-.    +..++  ......+..|
T Consensus        64 ~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~----~~~~~~~~~~g~~~~~~  139 (334)
T 2p9w_A           64 QMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFE----KVQDEFEKKAGKRPFGV  139 (334)
T ss_dssp             EEEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESH----HHHHHHHHHHSSCCEEE
T ss_pred             eeeEEEEeccCCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCc----cccccccccccccccCC
Confidence            6789999   78999998 562            3578999998821113333333310    00000  0000124468


Q ss_pred             ceEEEcCCCcEEEEECCC-CEEEEEc-CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCe
Q 011333          146 KGLTVDDRGNIYIADTMN-MAIRKIS-DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRA  222 (488)
Q Consensus       146 ~GIAvD~dG~LYVAD~~N-~rIrkid-~gg-VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~r  222 (488)
                      ++|++|++||+||+|+.. ..|.|++ +|. +..+.-...           .......++||++.+....|+|++. .++
T Consensus       140 nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~~~~~~~~~-----------~~~~~~G~nGIv~~pdg~~Liv~~~-~g~  207 (334)
T 2p9w_A          140 VQSAQDRDGNSYVAFALGMPAIARVSADGKTVSTFAWESG-----------NGGQRPGYSGITFDPHSNKLIAFGG-PRA  207 (334)
T ss_dssp             EEEEECTTSCEEEEEEESSCEEEEECTTSCCEEEEEECCC-----------CSSSCCSCSEEEEETTTTEEEEESS-SSS
T ss_pred             ceeEECCCCCEEEeCCCCCCeEEEEeCCCCEEeeeeecCC-----------CcccccCcceEEEeCCCCEEEEEcC-CCe
Confidence            999999999999999999 9999999 555 333321110           0112456899997655557888888 999


Q ss_pred             EEEEEcCCC
Q 011333          223 IREIQLHFD  231 (488)
Q Consensus       223 IrkI~~~g~  231 (488)
                      |.+|++...
T Consensus       208 L~~fD~~~p  216 (334)
T 2p9w_A          208 LTAFDVSKP  216 (334)
T ss_dssp             EEEEECSSS
T ss_pred             EEEEcCCCC
Confidence            999998743

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=98.57  E-value=3.9e-06  Score=81.27  Aligned_cols=140  Identities=14%  Similarity=0.153  Sum_probs=93.1

Q ss_pred             CceEEEEccCCc-EEEEECC------CCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCc-
Q 011333           84 EPYSVEVLPGGE-LLILDSA------NSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-  155 (488)
Q Consensus        84 ~P~GIaVd~dG~-LYVaD~~------n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~-  155 (488)
                      .|.+++++++|. ||+++..      .+.|++++..+.   ++......                -..|.+++++++|+ 
T Consensus        42 ~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~---~~~~~~~~----------------~~~~~~~~~s~dg~~  102 (353)
T 3vgz_A           42 GAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTL---EVTQAIHN----------------DLKPFGATINNTTQT  102 (353)
T ss_dssp             SEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTC---CEEEEEEE----------------SSCCCSEEEETTTTE
T ss_pred             CccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCC---eEEEEEec----------------CCCcceEEECCCCCE
Confidence            688999999875 9999876      568999998753   22222111                12488999999997 


Q ss_pred             EEEEECCCCEEEEEc--CCCc-EEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEEC-CCCeEEEEEcCCC
Q 011333          156 IYIADTMNMAIRKIS--DSGV-TTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDR-GNRAIREIQLHFD  231 (488)
Q Consensus       156 LYVAD~~N~rIrkid--~ggV-ttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~-gN~rIrkI~~~g~  231 (488)
                      +||++..++.|..++  .+.+ .++..+....        ........|.++++.++.+.||+++. .+++|+.+++...
T Consensus       103 l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~  174 (353)
T 3vgz_A          103 LWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKR--------TEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNI  174 (353)
T ss_dssp             EEEEETTTTEEEEEETTTCCEEEEEESCCCCC--------CSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTT
T ss_pred             EEEEecCCCEEEEEeCCCCeeEEEEecCCCcc--------ccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCC
Confidence            999999999999999  3443 4443321100        00111234788996555567999995 4788999998865


Q ss_pred             ceEEe-c-cCCCcceEEEEec
Q 011333          232 DCAYQ-Y-GSSFPLGIAVLLA  250 (488)
Q Consensus       232 ~~~~~-~-~~g~P~GIav~~g  250 (488)
                      ..... . ....|.++++...
T Consensus       175 ~~~~~~~~~~~~~~~~~~s~d  195 (353)
T 3vgz_A          175 KLKTAIQNTGKMSTGLALDSE  195 (353)
T ss_dssp             EEEEEECCCCTTCCCCEEETT
T ss_pred             ceEEEecCCCCccceEEECCC
Confidence            54432 2 2234788887644

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=98.54  E-value=1.2e-06  Score=85.77  Aligned_cols=125  Identities=16%  Similarity=0.161  Sum_probs=84.8

Q ss_pred             CCceEEEEccCCcEEEEECC--CCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCc-EEEE
Q 011333           83 IEPYSVEVLPGGELLILDSA--NSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-IYIA  159 (488)
Q Consensus        83 ~~P~GIaVd~dG~LYVaD~~--n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~-LYVA  159 (488)
                      ..|.+|++++||.||+++..  ++.|+.++.+++   ....+...             ......|.+|+++++|+ ||++
T Consensus        40 ~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g---~~~~~~~~-------------~~~~~~p~~~a~spdg~~l~~~  103 (347)
T 3hfq_A           40 QNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQ---TAHKLNTV-------------VAPGTPPAYVAVDEARQLVYSA  103 (347)
T ss_dssp             SCCCCEEECTTCEEEEEEEETTEEEEEEEEEETT---EEEEEEEE-------------EEESCCCSEEEEETTTTEEEEE
T ss_pred             CCcceEEEccCCeEEEEEecCCCceEEEEEecCC---cEEEeeee-------------ecCCCCCEEEEECCCCCEEEEE
Confidence            37999999999999999853  678999987652   32222110             01134699999999997 9999


Q ss_pred             ECCCCEEEEEc---CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcC
Q 011333          160 DTMNMAIRKIS---DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLH  229 (488)
Q Consensus       160 D~~N~rIrkid---~ggVttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~  229 (488)
                      +..++.|+.++   ++....+.....   .+  .++........|.+++ ++++|+||+++.+++.|+.+++.
T Consensus       104 ~~~~~~v~v~~~~~~g~~~~~~~~~~---~~--~~p~~~~~~~~~~~~~-~spdg~l~v~~~~~~~v~~~~~~  170 (347)
T 3hfq_A          104 NYHKGTAEVMKIAADGALTLTDTVQH---SG--HGPRPEQDGSHIHYTD-LTPDNRLAVIDLGSDKVYVYNVS  170 (347)
T ss_dssp             ETTTTEEEEEEECTTSCEEEEEEEEC---CC--CCSSTTCSSCCEEEEE-ECTTSCEEEEETTTTEEEEEEEC
T ss_pred             eCCCCEEEEEEeCCCCCeeecceeec---CC--CCCCccccCCCceEEE-ECCCCcEEEEeCCCCEEEEEEEC
Confidence            98888888887   233433321100   00  0111112345678898 67888899999999999999987

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.53  E-value=1.7e-06  Score=85.89  Aligned_cols=133  Identities=11%  Similarity=0.053  Sum_probs=91.9

Q ss_pred             CceEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEECC-
Q 011333           84 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTM-  162 (488)
Q Consensus        84 ~P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~-  162 (488)
                      .|.+++++++|++||+.  .+.|++++..+   +.+..+.....+           ...+.|+++++|++|++||++.. 
T Consensus        91 ~v~~i~~~~dg~l~v~~--~~gl~~~d~~~---g~~~~~~~~~~~-----------~~~~~~~~i~~d~~G~l~v~~~~~  154 (326)
T 2ghs_A           91 MGSALAKISDSKQLIAS--DDGLFLRDTAT---GVLTLHAELESD-----------LPGNRSNDGRMHPSGALWIGTMGR  154 (326)
T ss_dssp             CEEEEEEEETTEEEEEE--TTEEEEEETTT---CCEEEEECSSTT-----------CTTEEEEEEEECTTSCEEEEEEET
T ss_pred             cceEEEEeCCCeEEEEE--CCCEEEEECCC---CcEEEEeeCCCC-----------CCCCCCCCEEECCCCCEEEEeCCC
Confidence            68899999999999997  34699999875   445555432100           12456899999999999999853 


Q ss_pred             -----CCEEEEEcCCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCC-eEEEEECCCCeEEEEEcC---C-Cc
Q 011333          163 -----NMAIRKISDSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSC-SLLVIDRGNRAIREIQLH---F-DD  232 (488)
Q Consensus       163 -----N~rIrkid~ggVttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G-~LYVaD~gN~rIrkI~~~---g-~~  232 (488)
                           ...|.+++++.+..+...                 +..|++++ ++++| .|||+|+.+++|++++.+   | ..
T Consensus       155 ~~~~~~~~l~~~~~g~~~~~~~~-----------------~~~~~~i~-~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~  216 (326)
T 2ghs_A          155 KAETGAGSIYHVAKGKVTKLFAD-----------------ISIPNSIC-FSPDGTTGYFVDTKVNRLMRVPLDARTGLPT  216 (326)
T ss_dssp             TCCTTCEEEEEEETTEEEEEEEE-----------------ESSEEEEE-ECTTSCEEEEEETTTCEEEEEEBCTTTCCBS
T ss_pred             cCCCCceEEEEEeCCcEEEeeCC-----------------CcccCCeE-EcCCCCEEEEEECCCCEEEEEEcccccCCcc
Confidence                 367888884445444321                 33578999 56666 699999999999999975   2 11


Q ss_pred             ---eEEe---ccCCCcceEEEEec
Q 011333          233 ---CAYQ---YGSSFPLGIAVLLA  250 (488)
Q Consensus       233 ---~~~~---~~~g~P~GIav~~g  250 (488)
                         ....   ...+.|.|++++..
T Consensus       217 ~~~~~~~~~~~~~~~p~gi~~d~~  240 (326)
T 2ghs_A          217 GKAEVFIDSTGIKGGMDGSVCDAE  240 (326)
T ss_dssp             SCCEEEEECTTSSSEEEEEEECTT
T ss_pred             cCceEEEECCCCCCCCCeeEECCC
Confidence               1111   12356889988854

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=98.50  E-value=2.6e-06  Score=83.28  Aligned_cols=135  Identities=13%  Similarity=0.145  Sum_probs=95.7

Q ss_pred             CceEEEEccCCcEEEEECC-CCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEECC
Q 011333           84 EPYSVEVLPGGELLILDSA-NSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTM  162 (488)
Q Consensus        84 ~P~GIaVd~dG~LYVaD~~-n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~  162 (488)
                      ..+++.+.+||+++|++.. +++|+.++++|..   +..+ +...+.         ...+..|.+++++++|+++|++..
T Consensus        78 ~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~Gk~---l~~~-~~~~~~---------~~~~~~~~~v~~~~~G~~lv~~~~  144 (276)
T 3no2_A           78 EMQTARILPDGNALVAWCGHPSTILEVNMKGEV---LSKT-EFETGI---------ERPHAQFRQINKNKKGNYLVPLFA  144 (276)
T ss_dssp             EEEEEEECTTSCEEEEEESTTEEEEEECTTSCE---EEEE-EECCSC---------SSGGGSCSCCEECTTSCEEEEETT
T ss_pred             cccccEECCCCCEEEEecCCCCEEEEEeCCCCE---EEEE-eccCCC---------CcccccccCceECCCCCEEEEecC
Confidence            4557788899999999988 8999999998632   2222 110011         122556889999999999999999


Q ss_pred             CCEEEEEc-CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcC-CCceEEecc-
Q 011333          163 NMAIRKIS-DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLH-FDDCAYQYG-  238 (488)
Q Consensus       163 N~rIrkid-~gg-VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~-g~~~~~~~~-  238 (488)
                      +++|..++ +|. +.++...                  ..|++++ ...+|+++|++..+++|..+++. |...-.... 
T Consensus       145 ~~~v~~~d~~G~~~w~~~~~------------------~~~~~~~-~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~  205 (276)
T 3no2_A          145 TSEVREIAPNGQLLNSVKLS------------------GTPFSSA-FLDNGDCLVACGDAHCFVQLNLESNRIVRRVNAN  205 (276)
T ss_dssp             TTEEEEECTTSCEEEEEECS------------------SCCCEEE-ECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGG
T ss_pred             CCEEEEECCCCCEEEEEECC------------------CCcccee-EcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCC
Confidence            99999999 655 3333221                  2577787 67889999999999999999999 654433221 


Q ss_pred             ------CCCcceEEEEec
Q 011333          239 ------SSFPLGIAVLLA  250 (488)
Q Consensus       239 ------~g~P~GIav~~g  250 (488)
                            +..|.+++++..
T Consensus       206 ~~~~~~l~~~~~~~~~~~  223 (276)
T 3no2_A          206 DIEGVQLFFVAQLFPLQN  223 (276)
T ss_dssp             GSBSCCCSEEEEEEECTT
T ss_pred             CCCCccccccccceEcCC
Confidence                  223667777644

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=98.49  E-value=2.9e-06  Score=82.96  Aligned_cols=132  Identities=11%  Similarity=0.007  Sum_probs=96.5

Q ss_pred             CceEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEECCC
Q 011333           84 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMN  163 (488)
Q Consensus        84 ~P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~N  163 (488)
                      .|.+++++++|+++|++..+++|+.++++|    ++....+.                -..|.+++++++|+++|++..+
T Consensus       126 ~~~~v~~~~~G~~lv~~~~~~~v~~~d~~G----~~~w~~~~----------------~~~~~~~~~~~~g~~~v~~~~~  185 (276)
T 3no2_A          126 QFRQINKNKKGNYLVPLFATSEVREIAPNG----QLLNSVKL----------------SGTPFSSAFLDNGDCLVACGDA  185 (276)
T ss_dssp             SCSCCEECTTSCEEEEETTTTEEEEECTTS----CEEEEEEC----------------SSCCCEEEECTTSCEEEECBTT
T ss_pred             cccCceECCCCCEEEEecCCCEEEEECCCC----CEEEEEEC----------------CCCccceeEcCCCCEEEEeCCC
Confidence            577889999999999999999999999985    33333322                0247889999999999999999


Q ss_pred             CEEEEEc-C-CC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEEC----------CCCeEEEEEcCC
Q 011333          164 MAIRKIS-D-SG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDR----------GNRAIREIQLHF  230 (488)
Q Consensus       164 ~rIrkid-~-gg-VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~----------gN~rIrkI~~~g  230 (488)
                      ++|..++ + |. +..+.....           ....|..|.+++ +.++|++||++.          ++.++.+|+.+|
T Consensus       186 ~~v~~~d~~tG~~~w~~~~~~~-----------~~~~l~~~~~~~-~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g  253 (276)
T 3no2_A          186 HCFVQLNLESNRIVRRVNANDI-----------EGVQLFFVAQLF-PLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEG  253 (276)
T ss_dssp             SEEEEECTTTCCEEEEEEGGGS-----------BSCCCSEEEEEE-ECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTS
T ss_pred             CeEEEEeCcCCcEEEEecCCCC-----------CCccccccccce-EcCCCCEEEEeccCccccccccCCceEEEECCCC
Confidence            9999999 4 55 444432110           012477899999 788999999996          245799998888


Q ss_pred             CceEEe---ccCCCcceEEE
Q 011333          231 DDCAYQ---YGSSFPLGIAV  247 (488)
Q Consensus       231 ~~~~~~---~~~g~P~GIav  247 (488)
                      +..-.+   ...+.+.+||.
T Consensus       254 ~~~W~~~~~~~~~~~~~~~~  273 (276)
T 3no2_A          254 KVVWQLNDKVKFGMISTICP  273 (276)
T ss_dssp             BEEEEECCTTTSCCCCEEEE
T ss_pred             CEEEEecCcccccceeeeee
Confidence            755433   33456666654

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=98.47  E-value=1.2e-06  Score=89.37  Aligned_cols=147  Identities=11%  Similarity=-0.016  Sum_probs=96.8

Q ss_pred             CceEEEEcc-CCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcc--ccCCCcccccccCCcceEEE---cCCCcEE
Q 011333           84 EPYSVEVLP-GGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYS--GHVDGKPREARMNHPKGLTV---DDRGNIY  157 (488)
Q Consensus        84 ~P~GIaVd~-dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~--G~~dG~a~~a~Ln~P~GIAv---D~dG~LY  157 (488)
                      .|.+++.|+ +|.+|+++..+++|.++++.++   ....+  ...+..  |.        ...+|.||.+   |++|.||
T Consensus        14 yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~---~~~~~--~~~~~s~~g~--------~~~~~sGl~~~~~D~~grL~   80 (334)
T 2p9w_A           14 TPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQ---SHFNV--VIDGASSNGD--------GEQQMSGLSLLTHDNSKRLF   80 (334)
T ss_dssp             CCSCEEEETTTTEEEEEETTTTEEEEECTTTC---CEEEE--CCTTTCCSSC--------CSEEEEEEEESSSSSCCEEE
T ss_pred             CCcCccCcCCCCEEEEEeccCCEEEEEcCCCC---eEEEE--ecCCccccCC--------CcceeeEEEEeccCCCCcEE
Confidence            799999986 7889999999999999999852   22222  111211  21        1345789999   7899999


Q ss_pred             E-EEC------------CCCEEEEEc-C----CCcEEEeCCccCCCCCCCCC--CcccccCCCCCeeEEECCCCeEEEEE
Q 011333          158 I-ADT------------MNMAIRKIS-D----SGVTTIAGGKWGRGGGHVDG--PSEDAKFSNDFDVVYIGSSCSLLVID  217 (488)
Q Consensus       158 V-AD~------------~N~rIrkid-~----ggVttIaGg~~g~~~g~~dG--~~~~a~f~~P~gIa~vd~~G~LYVaD  217 (488)
                      | +|.            +.+.|.++| +    +.+...+......     ++  ......+..+++|+ +|.+|++||+|
T Consensus        81 vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~-----~~~~~~~g~~~~~~nDva-vD~~GnaYVt~  154 (334)
T 2p9w_A           81 AVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQ-----DEFEKKAGKRPFGVVQSA-QDRDGNSYVAF  154 (334)
T ss_dssp             EEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHH-----HHHHHHHSSCCEEEEEEE-ECTTSCEEEEE
T ss_pred             EEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCcccc-----ccccccccccccCCceeE-ECCCCCEEEeC
Confidence            8 662            357899999 5    4443333321000     00  00000234589999 89999999999


Q ss_pred             CCC-CeEEEEEcCCCceEEe-ccC------CCcceEEEEe
Q 011333          218 RGN-RAIREIQLHFDDCAYQ-YGS------SFPLGIAVLL  249 (488)
Q Consensus       218 ~gN-~rIrkI~~~g~~~~~~-~~~------g~P~GIav~~  249 (488)
                      +.. +.|++++++|...... ...      ..+.||+...
T Consensus       155 s~~~~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~p  194 (334)
T 2p9w_A          155 ALGMPAIARVSADGKTVSTFAWESGNGGQRPGYSGITFDP  194 (334)
T ss_dssp             EESSCEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEET
T ss_pred             CCCCCeEEEEeCCCCEEeeeeecCCCcccccCcceEEEeC
Confidence            999 9999999998744321 111      1366888873

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=98.46  E-value=2.7e-05  Score=75.28  Aligned_cols=140  Identities=16%  Similarity=0.166  Sum_probs=89.3

Q ss_pred             CceEEEEccCCc-EEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCc-EEEEEC
Q 011333           84 EPYSVEVLPGGE-LLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-IYIADT  161 (488)
Q Consensus        84 ~P~GIaVd~dG~-LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~-LYVAD~  161 (488)
                      .|.+++++++|. ||+++..++.|..++..++   ++........+..      ........|.+++++++|+ ||+++.
T Consensus        90 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~---~~~~~~~~~~~~~------~~~~~~~~~~~~~~s~dg~~l~~~~~  160 (353)
T 3vgz_A           90 KPFGATINNTTQTLWFGNTVNSAVTAIDAKTG---EVKGRLVLDDRKR------TEEVRPLQPRELVADDATNTVYISGI  160 (353)
T ss_dssp             CCCSEEEETTTTEEEEEETTTTEEEEEETTTC---CEEEEEESCCCCC------CSSCCCCEEEEEEEETTTTEEEEEEE
T ss_pred             CcceEEECCCCCEEEEEecCCCEEEEEeCCCC---eeEEEEecCCCcc------ccccCCCCCceEEECCCCCEEEEEec
Confidence            689999999987 9999998899999998753   3322222110000      0001123588999999986 999994


Q ss_pred             -CCCEEEEEc-C-CCc-EEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCceEEe-
Q 011333          162 -MNMAIRKIS-D-SGV-TTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCAYQ-  236 (488)
Q Consensus       162 -~N~rIrkid-~-ggV-ttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g~~~~~~-  236 (488)
                       .+++|.+++ . +.+ .++...                 -..|.++++.++...||+++. ++.|..+++........ 
T Consensus       161 ~~~~~i~~~d~~~~~~~~~~~~~-----------------~~~~~~~~~s~dg~~l~~~~~-~~~i~~~d~~~~~~~~~~  222 (353)
T 3vgz_A          161 GKESVIWVVDGGNIKLKTAIQNT-----------------GKMSTGLALDSEGKRLYTTNA-DGELITIDTADNKILSRK  222 (353)
T ss_dssp             SSSCEEEEEETTTTEEEEEECCC-----------------CTTCCCCEEETTTTEEEEECT-TSEEEEEETTTTEEEEEE
T ss_pred             CCCceEEEEcCCCCceEEEecCC-----------------CCccceEEECCCCCEEEEEcC-CCeEEEEECCCCeEEEEE
Confidence             478899999 3 333 222211                 124788886555556888876 67899999876544321 


Q ss_pred             -c----cCCCcceEEEEec
Q 011333          237 -Y----GSSFPLGIAVLLA  250 (488)
Q Consensus       237 -~----~~g~P~GIav~~g  250 (488)
                       .    ....+.++++...
T Consensus       223 ~~~~~~~~~~~~~~~~s~d  241 (353)
T 3vgz_A          223 KLLDDGKEHFFINISLDTA  241 (353)
T ss_dssp             ECCCSSSCCCEEEEEEETT
T ss_pred             EcCCCCCCcccceEEECCC
Confidence             1    1224556777654

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=98.41  E-value=3.1e-07  Score=94.51  Aligned_cols=111  Identities=15%  Similarity=0.109  Sum_probs=82.6

Q ss_pred             CCCCCceEEEEccCCcEEEEEC-----------------CCCeEEEEeCCCCcccccEEEecCCCCccccCCCccccccc
Q 011333           80 KLGIEPYSVEVLPGGELLILDS-----------------ANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARM  142 (488)
Q Consensus        80 ~~l~~P~GIaVd~dG~LYVaD~-----------------~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~L  142 (488)
                      ..++.|++++++++|.+||++.                 ..++|+++++.     .+..++..                |
T Consensus       162 ~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~-----~~~~~~~~----------------l  220 (355)
T 3sre_A          162 KLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN-----DVRVVAEG----------------F  220 (355)
T ss_dssp             TTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT-----CCEEEEEE----------------E
T ss_pred             CCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECC-----eEEEeecC----------------C
Confidence            3477999999999999999875                 24689999873     34555443                7


Q ss_pred             CCcceEEEcCCC-cEEEEECCCCEEEEEc-C--CCcEE--EeCCccCCCCCCCCCCcccccCCCCCeeEEECC-CCeEEE
Q 011333          143 NHPKGLTVDDRG-NIYIADTMNMAIRKIS-D--SGVTT--IAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGS-SCSLLV  215 (488)
Q Consensus       143 n~P~GIAvD~dG-~LYVAD~~N~rIrkid-~--ggVtt--IaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~-~G~LYV  215 (488)
                      ..|+|||+++|| .|||+|+..++|++++ +  +.+..  +...                 -..|-+++ +|. +|+|||
T Consensus       221 ~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~~-----------------~g~PDGi~-vD~e~G~lwv  282 (355)
T 3sre_A          221 DFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSF-----------------DTLVDNIS-VDPVTGDLWV  282 (355)
T ss_dssp             SSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEC-----------------SSEEEEEE-ECTTTCCEEE
T ss_pred             cccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEeC-----------------CCCCceEE-EeCCCCcEEE
Confidence            789999999999 6999999999999998 3  33321  1100                 12588999 898 599999


Q ss_pred             EE-CCCCeEEEEEcC
Q 011333          216 ID-RGNRAIREIQLH  229 (488)
Q Consensus       216 aD-~gN~rIrkI~~~  229 (488)
                      +. .+..+|.++++.
T Consensus       283 a~~~~g~~v~~~~P~  297 (355)
T 3sre_A          283 GCHPNGMRIFFYDAE  297 (355)
T ss_dssp             EEESCHHHHHSCCTT
T ss_pred             EecCCceEEEEECCC
Confidence            76 455666666654

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=98.36  E-value=8.1e-06  Score=79.85  Aligned_cols=121  Identities=10%  Similarity=0.134  Sum_probs=81.3

Q ss_pred             CCceEEEEccCCc-EEEEECCCCeEEEEeCCCCcccccEEE---ecCCCCccccCCCcccccccCCcceEEEcCCCc-EE
Q 011333           83 IEPYSVEVLPGGE-LLILDSANSNLYRISSSLSLYSRPKLV---AGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-IY  157 (488)
Q Consensus        83 ~~P~GIaVd~dG~-LYVaD~~n~rI~kid~~g~~~g~i~tv---aG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~-LY  157 (488)
                      ..|.++++++||. ||+++...++|..++.+... +.+..+   .....+.          .....|.+|+++++|+ ||
T Consensus       187 ~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~-g~~~~~~~~~~~~~~~----------~~~~~~~~i~~spdG~~l~  255 (347)
T 3hfq_A          187 FGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQT-GAFTQLGIVKTIPADY----------TAHNGAAAIRLSHDGHFLY  255 (347)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEEEETTT-TEEEEEEEEESSCTTC----------CSCCEEEEEEECTTSCEEE
T ss_pred             CCCceEEECCCCCEEEEEeCCCCEEEEEEecCCC-CceEEeeeeeecCCCC----------CCCCcceeEEECCCCCEEE
Confidence            4688999999998 99999888888888765211 222222   1111111          1135689999999997 89


Q ss_pred             EEECCCCEEEEEc-C--CCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCC-eEEEEECCCCeEEEEEcC
Q 011333          158 IADTMNMAIRKIS-D--SGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSC-SLLVIDRGNRAIREIQLH  229 (488)
Q Consensus       158 VAD~~N~rIrkid-~--ggVttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G-~LYVaD~gN~rIrkI~~~  229 (488)
                      |++..++.|..++ +  +.+..+.....              .-..|.+++ ++++| .|||++.+++.|..++.+
T Consensus       256 v~~~~~~~v~v~~~~~~g~~~~~~~~~~--------------~~~~~~~~~-~spdg~~l~v~~~~~~~v~v~~~d  316 (347)
T 3hfq_A          256 VSNRGYNTLAVFAVTADGHLTLIQQIST--------------EGDFPRDFD-LDPTEAFVVVVNQNTDNATLYARD  316 (347)
T ss_dssp             EEEETTTEEEEEEECGGGCEEEEEEEEC--------------SSSCCCEEE-ECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             EEeCCCCEEEEEEECCCCcEEEeEEEec--------------CCCCcCeEE-ECCCCCEEEEEEcCCCcEEEEEEe
Confidence            9998889999888 3  23333322110              012588999 56666 599999998988888654

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=98.33  E-value=2.2e-05  Score=75.74  Aligned_cols=143  Identities=13%  Similarity=0.212  Sum_probs=93.6

Q ss_pred             CCCceEEEEccCCc-EEEEECCCCeEEEEeCCCCcc-cccEEEecCCCCccccCCCcccccccCCcceEEEcCCCc-EEE
Q 011333           82 GIEPYSVEVLPGGE-LLILDSANSNLYRISSSLSLY-SRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-IYI  158 (488)
Q Consensus        82 l~~P~GIaVd~dG~-LYVaD~~n~rI~kid~~g~~~-g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~-LYV  158 (488)
                      ...|.+++++++|. ||+++..++.|+.++...+.. ..+..+..                 -..|.+++++++|+ ||+
T Consensus       175 ~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~-----------------~~~~~~~~~spdg~~l~v  237 (331)
T 3u4y_A          175 GTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGT-----------------NNLPGTIVVSRDGSTVYV  237 (331)
T ss_dssp             SSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEEC-----------------SSCCCCEEECTTSSEEEE
T ss_pred             CCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccC-----------------CCCCceEEECCCCCEEEE
Confidence            34699999999997 999999899999999875321 00222221                 13588999999998 999


Q ss_pred             EECCCCEEEEEc-C-CCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCceEEe
Q 011333          159 ADTMNMAIRKIS-D-SGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCAYQ  236 (488)
Q Consensus       159 AD~~N~rIrkid-~-ggVttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g~~~~~~  236 (488)
                      ++...+.|..++ . +.+..+.......   ..+.    .......++++.++...|||+...++.|..+++......+.
T Consensus       238 ~~~~~~~i~~~d~~~~~~~~~~~~~~~~---~~~~----~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~  310 (331)
T 3u4y_A          238 LTESTVDVFNFNQLSGTLSFVKSFGHGL---LIDP----RPLFGANQMALNKTETKLFISANISRELKVFTISGKVVGYV  310 (331)
T ss_dssp             ECSSEEEEEEEETTTTEEEEEEEEECCC---CCCC----GGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCEEEEC
T ss_pred             EEcCCCEEEEEECCCCceeeeccccccc---ccCC----CCcccccceEECCCCCEEEEecCCCCcEEEEEecCCcccce
Confidence            998888999999 3 4443332111100   0000    11112356885444456899999999999999987666555


Q ss_pred             ccCCCcceEEEE
Q 011333          237 YGSSFPLGIAVL  248 (488)
Q Consensus       237 ~~~g~P~GIav~  248 (488)
                      .......++++.
T Consensus       311 ~~~~~~g~~~~~  322 (331)
T 3u4y_A          311 AGIEANGGIAIC  322 (331)
T ss_dssp             TTCCCBSCEEEC
T ss_pred             ecccccCCeEEE
Confidence            444444455543

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=98.29  E-value=4.1e-05  Score=75.36  Aligned_cols=145  Identities=14%  Similarity=0.166  Sum_probs=90.0

Q ss_pred             CceEEEEccCCc-EEEEECCCCeEEEEeCCCCccc----c-cEEEecCCCCccccCCCcccccccCCcceEEEcCCCc-E
Q 011333           84 EPYSVEVLPGGE-LLILDSANSNLYRISSSLSLYS----R-PKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-I  156 (488)
Q Consensus        84 ~P~GIaVd~dG~-LYVaD~~n~rI~kid~~g~~~g----~-i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~-L  156 (488)
                      .|++++++|+|. ||+++...++|+.++.+... +    . +... |...        ......-..|++++++++|+ |
T Consensus       156 ~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~-~~~~~~~l~~~-~~~~--------~~~~~~~~~~~~~~~spdg~~l  225 (361)
T 3scy_A          156 HLHCVRITPDGKYLLADDLGTDQIHKFNINPNA-NADNKEKFLTK-GTPE--------AFKVAPGSGPRHLIFNSDGKFA  225 (361)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEECTTC-CTTTCCCCEEE-EEEE--------EEECCTTCCEEEEEECTTSSEE
T ss_pred             cceEEEECCCCCEEEEEeCCCCEEEEEEEcCCC-Ccccccceeec-cccc--------ceecCCCCCCeEEEEcCCCCEE
Confidence            358899999997 99999988888888655311 1    1 1111 0000        00000124588999999996 9


Q ss_pred             EEEECCCCEEEEEc--CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCC-eEEEEECC-CCeEEEEEcC---
Q 011333          157 YIADTMNMAIRKIS--DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSC-SLLVIDRG-NRAIREIQLH---  229 (488)
Q Consensus       157 YVAD~~N~rIrkid--~ggVttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G-~LYVaD~g-N~rIrkI~~~---  229 (488)
                      |+++..++.|+.++  .+.+..+......           ...+..|.+|+ ++++| .||+++.+ .+.|..++.+   
T Consensus       226 ~v~~~~~~~v~v~~~~~g~~~~~~~~~~~-----------~~~~~~~~~i~-~spdg~~l~v~~~~~~~~i~v~~~~~~~  293 (361)
T 3scy_A          226 YLINEIGGTVIAFRYADGMLDEIQTVAAD-----------TVNAQGSGDIH-LSPDGKYLYASNRLKADGVAIFKVDETN  293 (361)
T ss_dssp             EEEETTTCEEEEEEEETTEEEEEEEEESC-----------SSCCCCEEEEE-ECTTSSEEEEEECSSSCEEEEEEECTTT
T ss_pred             EEEcCCCCeEEEEEecCCceEEeEEEecC-----------CCCCCCcccEE-ECCCCCEEEEECCCCCCEEEEEEEcCCC
Confidence            99998889999988  4444333211100           11245678999 55666 58999998 8889888875   


Q ss_pred             CCceE--EeccCCCcceEEEEec
Q 011333          230 FDDCA--YQYGSSFPLGIAVLLA  250 (488)
Q Consensus       230 g~~~~--~~~~~g~P~GIav~~g  250 (488)
                      +....  .......|.++++...
T Consensus       294 g~~~~~~~~~~g~~~~~~~~spd  316 (361)
T 3scy_A          294 GTLTKVGYQLTGIHPRNFIITPN  316 (361)
T ss_dssp             CCEEEEEEEECSSCCCEEEECTT
T ss_pred             CcEEEeeEecCCCCCceEEECCC
Confidence            22111  1222346888888743

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=98.26  E-value=3.4e-05  Score=75.96  Aligned_cols=119  Identities=13%  Similarity=0.182  Sum_probs=81.1

Q ss_pred             CCCceEEEEccCCc-EEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCc-EEEE
Q 011333           82 GIEPYSVEVLPGGE-LLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-IYIA  159 (488)
Q Consensus        82 l~~P~GIaVd~dG~-LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~-LYVA  159 (488)
                      ...|.++++++||. ||+++..++.|..++.++   +.+..+.... ...         ..+..|.+|+++++|+ ||++
T Consensus       210 ~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~---g~~~~~~~~~-~~~---------~~~~~~~~i~~spdg~~l~v~  276 (361)
T 3scy_A          210 GSGPRHLIFNSDGKFAYLINEIGGTVIAFRYAD---GMLDEIQTVA-ADT---------VNAQGSGDIHLSPDGKYLYAS  276 (361)
T ss_dssp             TCCEEEEEECTTSSEEEEEETTTCEEEEEEEET---TEEEEEEEEE-SCS---------SCCCCEEEEEECTTSSEEEEE
T ss_pred             CCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecC---CceEEeEEEe-cCC---------CCCCCcccEEECCCCCEEEEE
Confidence            34789999999997 999998888999998764   2332221110 000         1245688999999997 8899


Q ss_pred             ECC-CCEEEEEc-C---CCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCC-eEEEEECCCCeEEEEEcC
Q 011333          160 DTM-NMAIRKIS-D---SGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSC-SLLVIDRGNRAIREIQLH  229 (488)
Q Consensus       160 D~~-N~rIrkid-~---ggVttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G-~LYVaD~gN~rIrkI~~~  229 (488)
                      +.. .+.|..++ +   +.+..+.....+               ..|.+++ ++++| .||+++..++.|..+..+
T Consensus       277 ~~~~~~~i~v~~~~~~~g~~~~~~~~~~g---------------~~~~~~~-~spdg~~l~~~~~~~~~v~v~~~d  336 (361)
T 3scy_A          277 NRLKADGVAIFKVDETNGTLTKVGYQLTG---------------IHPRNFI-ITPNGKYLLVACRDTNVIQIFERD  336 (361)
T ss_dssp             ECSSSCEEEEEEECTTTCCEEEEEEEECS---------------SCCCEEE-ECTTSCEEEEEETTTTEEEEEEEC
T ss_pred             CCCCCCEEEEEEEcCCCCcEEEeeEecCC---------------CCCceEE-ECCCCCEEEEEECCCCCEEEEEEE
Confidence            988 78888866 2   334333221101               2688999 56666 599999888888885554

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=98.24  E-value=3e-06  Score=86.08  Aligned_cols=128  Identities=14%  Similarity=0.078  Sum_probs=79.0

Q ss_pred             CceEEEEcc----CCcEEEEECC-------CCeEEEEeCCCC--cccccEEEecCCCCccccCCCcccccccCCcceEEE
Q 011333           84 EPYSVEVLP----GGELLILDSA-------NSNLYRISSSLS--LYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTV  150 (488)
Q Consensus        84 ~P~GIaVd~----dG~LYVaD~~-------n~rI~kid~~g~--~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAv  150 (488)
                      .|.||+++|    +|.|||++..       .++|.+++.+..  ......+++.....         .....+.|.+|++
T Consensus        67 g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~---------~~~~~h~~~~l~~  137 (353)
T 2g8s_A           67 GLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPK---------LSTGNHFGGRLVF  137 (353)
T ss_dssp             SEEEEEECTTHHHHCEEEEEEEEECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSC---------CBSSSCCCCCEEE
T ss_pred             CceeEEECCCCCCCCEEEEEEeCCCCCCCceeEEEEEEECCCCCCCCceEEEEEECCC---------CCCCcccCccEEE
Confidence            678999998    5899999864       468999876532  11222333321100         0112456899999


Q ss_pred             cCCCcEEEEECC-------------CCEEEEEc-CCCcEEEeCCccCCCCCCCCC---CcccccCCCCCeeEEECC-CCe
Q 011333          151 DDRGNIYIADTM-------------NMAIRKIS-DSGVTTIAGGKWGRGGGHVDG---PSEDAKFSNDFDVVYIGS-SCS  212 (488)
Q Consensus       151 D~dG~LYVAD~~-------------N~rIrkid-~ggVttIaGg~~g~~~g~~dG---~~~~a~f~~P~gIa~vd~-~G~  212 (488)
                      +++|.|||+...             ..+|.+|+ ++.+.  .+.+    +-...+   ......+.+|++++ +++ +|.
T Consensus       138 ~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p--~~np----f~~~~~~~~~i~a~G~rnp~gl~-~d~~~g~  210 (353)
T 2g8s_A          138 DGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIP--DDNP----FIKESGVRAEIWSYGIRNPQGMA-MNPWSNA  210 (353)
T ss_dssp             CSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCC--TTCT----TTTSTTSCTTEEEECCSEEEEEE-EETTTTE
T ss_pred             CCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCC--CCCC----CcCCCCCCccEEEEcCcCccceE-EECCCCC
Confidence            999999999633             35899998 54431  1110    000011   11123467899999 566 899


Q ss_pred             EEEEECCCC---eEEEEE
Q 011333          213 LLVIDRGNR---AIREIQ  227 (488)
Q Consensus       213 LYVaD~gN~---rIrkI~  227 (488)
                      ||++|.+.+   .|.+|.
T Consensus       211 l~~~d~g~~~~dei~~i~  228 (353)
T 2g8s_A          211 LWLNEHGPRGGDEINIPQ  228 (353)
T ss_dssp             EEEEEECSBSCEEEECCC
T ss_pred             EEEEecCCCCCcEEeEec
Confidence            999998754   555554

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=98.22  E-value=1.4e-05  Score=81.87  Aligned_cols=129  Identities=10%  Similarity=0.107  Sum_probs=81.5

Q ss_pred             CCCceEEEEcc----CCcEEEEEC--CCCeEEEEeCCCC-----cccccEEEecCCCCccccCCCcccccccCCcceEEE
Q 011333           82 GIEPYSVEVLP----GGELLILDS--ANSNLYRISSSLS-----LYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTV  150 (488)
Q Consensus        82 l~~P~GIaVd~----dG~LYVaD~--~n~rI~kid~~g~-----~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAv  150 (488)
                      ...|.||+++|    +|.|||+.+  ..++|.|+..++.     ......+++-....           ...+....|++
T Consensus        79 ~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~-----------~~~H~g~~l~f  147 (347)
T 3das_A           79 EGGLLGIALSPDYASDHMVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPK-----------GVIHNGGRIAF  147 (347)
T ss_dssp             TBSEEEEEECTTHHHHCEEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECC-----------CSSCCCCCEEE
T ss_pred             CCCceeeEeccccccCCEEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCC-----------CCCccCccccC
Confidence            34789999998    588999753  4579999987641     22233333321100           11345778999


Q ss_pred             cCCCcEEEEEC-------------CCCEEEEEc-CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEE
Q 011333          151 DDRGNIYIADT-------------MNMAIRKIS-DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVI  216 (488)
Q Consensus       151 D~dG~LYVAD~-------------~N~rIrkid-~ggVttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVa  216 (488)
                      +++|.|||+-.             ...+|.+|+ ++.+.  .+..      +.+...-..-+.+|.+|+ ++++|.||++
T Consensus       148 gpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip--~~nP------f~~~~i~a~G~RNp~Gla-~dp~G~L~~~  218 (347)
T 3das_A          148 GPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPA--PGNP------FPGSPVYSYGHRNVQGLA-WDDKQRLFAS  218 (347)
T ss_dssp             CTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBC--TTCS------STTCCEEEBCCSBCCEEE-ECTTCCEEEE
T ss_pred             CCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCcc--CCCC------CCCCeEEeeCCCCcceEE-ECCCCCEEEE
Confidence            99999999942             246888888 55431  0000      001111222377899999 6779999999


Q ss_pred             ECCC---CeEEEEEcCC
Q 011333          217 DRGN---RAIREIQLHF  230 (488)
Q Consensus       217 D~gN---~rIrkI~~~g  230 (488)
                      |.+.   ..|..|...+
T Consensus       219 d~g~~~~deln~i~~G~  235 (347)
T 3das_A          219 EFGQDTWDELNAIKPGD  235 (347)
T ss_dssp             ECCSSSCEEEEEECTTC
T ss_pred             ecCCCCCceeeEEcCCC
Confidence            9876   3577775443

>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*

Probab=98.15  E-value=1.4e-05  Score=86.87  Aligned_cols=122  Identities=18%  Similarity=0.169  Sum_probs=81.7

Q ss_pred             CCCCCceEEEEcc-CCcEEEEECCC---------------------CeEEEEeCCCCc------ccccEEEecCCCCc--
Q 011333           80 KLGIEPYSVEVLP-GGELLILDSAN---------------------SNLYRISSSLSL------YSRPKLVAGSAEGY--  129 (488)
Q Consensus        80 ~~l~~P~GIaVd~-dG~LYVaD~~n---------------------~rI~kid~~g~~------~g~i~tvaG~~~G~--  129 (488)
                      ..+..|.+|+++| +|.||++=++|                     ++|+++...++.      ...+.+++|.+...  
T Consensus       381 T~mdRpEdi~v~p~~g~vY~alTnn~~rg~~~~~~~~~Npr~~n~~G~I~r~~e~~~d~~a~~f~W~i~l~~G~p~~~~~  460 (592)
T 4a9v_A          381 TRMDRPEWIVVSPKDGQVYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHASKTFAWDLFVVAGNPSVHAG  460 (592)
T ss_dssp             CCEECEEEEEECTTTCCEEEEECCBTTTTSTTSCCBTTBCCSSBSSCEEEEEEEGGGCTTCSEEEEEEEEECCCTTTSTT
T ss_pred             ccccCccceeEcCCCCEEEEEEeCCCCCCCcCccccCCCCccCCCCCeEEEEeeCCCCcccceeeEEEEEEccCCccccc
Confidence            3456899999998 89999985432                     789999765321      01233444443111  


Q ss_pred             ---cccCCCcccccccCCcceEEEcCCCcEEE-EECC-----------CCEEEEEc--CCCcEEEeCCccCCCCCCCCCC
Q 011333          130 ---SGHVDGKPREARMNHPKGLTVDDRGNIYI-ADTM-----------NMAIRKIS--DSGVTTIAGGKWGRGGGHVDGP  192 (488)
Q Consensus       130 ---~G~~dG~a~~a~Ln~P~GIAvD~dG~LYV-AD~~-----------N~rIrkid--~ggVttIaGg~~g~~~g~~dG~  192 (488)
                         .|. .+......|+.|.+|+||++|+||| +|..           |+.|..++  .+.+..++.+..          
T Consensus       461 ~~~~g~-~~~~~~~~fnsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~----------  529 (592)
T 4a9v_A          461 TPKGGS-SNITPQNMFNSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPI----------  529 (592)
T ss_dssp             SGGGCC-TTCCTTTCCCCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCT----------
T ss_pred             ccccCc-cCccccCccCCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCC----------
Confidence               110 1122345799999999999999999 8863           56889988  355777764321          


Q ss_pred             cccccCCCCCeeEEECCCCeEEEEE
Q 011333          193 SEDAKFSNDFDVVYIGSSCSLLVID  217 (488)
Q Consensus       193 ~~~a~f~~P~gIa~vd~~G~LYVaD  217 (488)
                           +..|+|+++.++...|||+-
T Consensus       530 -----~aEpnGiafSPD~ktLfV~v  549 (592)
T 4a9v_A          530 -----GCEVTGISFSPDQKTLFVGI  549 (592)
T ss_dssp             -----TCEEEEEEECTTSSEEEEEE
T ss_pred             -----CccccCCEECCCCCEEEEEE
Confidence                 34789999777667888874

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.04  E-value=0.00011  Score=72.59  Aligned_cols=132  Identities=14%  Similarity=0.002  Sum_probs=87.8

Q ss_pred             CceEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEECCC
Q 011333           84 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMN  163 (488)
Q Consensus        84 ~P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~N  163 (488)
                      .+.|++++ ++.||+++..+++|.++|..+..  .+.++. .  +             ...+.||+.| .+.+|++| +.
T Consensus        67 fgeGi~~~-g~~lyv~t~~~~~v~viD~~t~~--v~~~i~-~--g-------------~~~g~glt~D-g~~l~vs~-gs  125 (266)
T 2iwa_A           67 FGEGLTLL-NEKLYQVVWLKNIGFIYDRRTLS--NIKNFT-H--Q-------------MKDGWGLATD-GKILYGSD-GT  125 (266)
T ss_dssp             CEEEEEEE-TTEEEEEETTCSEEEEEETTTTE--EEEEEE-C--C-------------SSSCCEEEEC-SSSEEEEC-SS
T ss_pred             ceEEEEEe-CCEEEEEEecCCEEEEEECCCCc--EEEEEE-C--C-------------CCCeEEEEEC-CCEEEEEC-CC
Confidence            45677886 46899999999999999987521  222221 0  1             0124556665 35799999 68


Q ss_pred             CEEEEEcCC--C-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCceEE-ec--
Q 011333          164 MAIRKISDS--G-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCAY-QY--  237 (488)
Q Consensus       164 ~rIrkid~g--g-VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g~~~~~-~~--  237 (488)
                      ++|..+|..  . +.+|.-+..+.            .+..|+.+.++  +|.||++....+.|.+||+....+.. ..  
T Consensus       126 ~~l~viD~~t~~v~~~I~Vg~~~~------------p~~~~nele~~--dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~  191 (266)
T 2iwa_A          126 SILYEIDPHTFKLIKKHNVKYNGH------------RVIRLNELEYI--NGEVWANIWQTDCIARISAKDGTLLGWILLP  191 (266)
T ss_dssp             SEEEEECTTTCCEEEEEECEETTE------------ECCCEEEEEEE--TTEEEEEETTSSEEEEEETTTCCEEEEEECH
T ss_pred             CeEEEEECCCCcEEEEEEECCCCc------------ccccceeEEEE--CCEEEEecCCCCeEEEEECCCCcEEEEEECC
Confidence            899999943  3 44554322111            24568899866  58999999999999999997654432 21  


Q ss_pred             c------------CCCcceEEEEec
Q 011333          238 G------------SSFPLGIAVLLA  250 (488)
Q Consensus       238 ~------------~g~P~GIav~~g  250 (488)
                      +            ...|.|||++.+
T Consensus       192 g~~~~~~~~~~~~~~v~nGIa~~~~  216 (266)
T 2iwa_A          192 NLRKKLIDEGFRDIDVLNGIAWDQE  216 (266)
T ss_dssp             HHHHHHHHTTCTTCCCEEEEEEETT
T ss_pred             CcccccccccccccCceEEEEEcCC
Confidence            1            135789999855

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=98.02  E-value=7.8e-05  Score=71.81  Aligned_cols=119  Identities=13%  Similarity=0.199  Sum_probs=81.7

Q ss_pred             CCCceEEEEccCCc-EEEEECCCCe-EEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCc-EEE
Q 011333           82 GIEPYSVEVLPGGE-LLILDSANSN-LYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-IYI  158 (488)
Q Consensus        82 l~~P~GIaVd~dG~-LYVaD~~n~r-I~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~-LYV  158 (488)
                      ...|.+++++++|+ ||+++...+. |..++.+..  +.+....... -           ..-..|.+++++++|+ ||+
T Consensus       127 ~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~--g~~~~~~~~~-~-----------~~~~~~~~~~~spdg~~l~v  192 (331)
T 3u4y_A          127 PYDAVGIAISPNGNGLILIDRSSANTVRRFKIDAD--GVLFDTGQEF-I-----------SGGTRPFNITFTPDGNFAFV  192 (331)
T ss_dssp             CTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTT--CCEEEEEEEE-E-----------CSSSSEEEEEECTTSSEEEE
T ss_pred             CCCccceEECCCCCEEEEEecCCCceEEEEEECCC--CcEeecCCcc-c-----------cCCCCccceEECCCCCEEEE
Confidence            34789999999996 9999987677 776665421  2221111100 0           0023489999999997 999


Q ss_pred             EECCCCEEEEEc--CCCc----EEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCe-EEEEECCCCeEEEEEcCCC
Q 011333          159 ADTMNMAIRKIS--DSGV----TTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCS-LLVIDRGNRAIREIQLHFD  231 (488)
Q Consensus       159 AD~~N~rIrkid--~ggV----ttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~-LYVaD~gN~rIrkI~~~g~  231 (488)
                      ++..++.|+.++  .+.+    .++..+                  ..|.+++ ++++|+ ||+++.+.+.|..+++...
T Consensus       193 ~~~~~~~v~v~d~~~~~~~~~~~~~~~~------------------~~~~~~~-~spdg~~l~v~~~~~~~i~~~d~~~~  253 (331)
T 3u4y_A          193 ANLIGNSIGILETQNPENITLLNAVGTN------------------NLPGTIV-VSRDGSTVYVLTESTVDVFNFNQLSG  253 (331)
T ss_dssp             EETTTTEEEEEECSSTTSCEEEEEEECS------------------SCCCCEE-ECTTSSEEEEECSSEEEEEEEETTTT
T ss_pred             EeCCCCeEEEEECCCCcccceeeeccCC------------------CCCceEE-ECCCCCEEEEEEcCCCEEEEEECCCC
Confidence            999999999999  3443    222211                  3578898 566665 9999988889999998754


Q ss_pred             ce
Q 011333          232 DC  233 (488)
Q Consensus       232 ~~  233 (488)
                      ..
T Consensus       254 ~~  255 (331)
T 3u4y_A          254 TL  255 (331)
T ss_dssp             EE
T ss_pred             ce
Confidence            43

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=97.96  E-value=0.00037  Score=66.63  Aligned_cols=141  Identities=11%  Similarity=0.051  Sum_probs=88.4

Q ss_pred             CCceEEEEccCCc-EEEEECCCCeEEEEeCCCCcccccE---EEecCCCCccccCCCcccccccCCcceEEEcCCCc-EE
Q 011333           83 IEPYSVEVLPGGE-LLILDSANSNLYRISSSLSLYSRPK---LVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-IY  157 (488)
Q Consensus        83 ~~P~GIaVd~dG~-LYVaD~~n~rI~kid~~g~~~g~i~---tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~-LY  157 (488)
                      ..|.+++++++|. ||+++..++.|..++.+... +.+.   .+.....+.          .....|.+|+++++|. ||
T Consensus       178 ~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~-g~~~~~~~~~~~~~~~----------~~~~~~~~i~~s~dg~~l~  246 (343)
T 1ri6_A          178 AGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPH-GNIECVQTLDMMPENF----------SDTRWAADIHITPDGRHLY  246 (343)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEESSCTT-SCCEEEEEEECSCTTC----------CSCCCEEEEEECTTSSEEE
T ss_pred             CCcceEEECCCCCEEEEEeCCCCEEEEEEecCCC-CcEEEEeeccccCccc----------cccCCccceEECCCCCEEE
Confidence            4788999999997 88999888999999985211 2222   221111111          1145678999999995 88


Q ss_pred             EEECCCCEEEEEc-C--CC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCC-eEEEEECCCCeEEEEEcC--C
Q 011333          158 IADTMNMAIRKIS-D--SG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSC-SLLVIDRGNRAIREIQLH--F  230 (488)
Q Consensus       158 VAD~~N~rIrkid-~--gg-VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G-~LYVaD~gN~rIrkI~~~--g  230 (488)
                      +++..++.|+.++ +  ++ ...+.....               -..|.+++ ++++| .||+++...+.|..++.+  .
T Consensus       247 v~~~~~~~i~v~d~~~~~~~~~~~~~~~~---------------~~~~~~~~-~s~dg~~l~~~~~~~~~v~v~~~d~~~  310 (343)
T 1ri6_A          247 ACDRTASLITVFSVSEDGSVLSKEGFQPT---------------ETQPRGFN-VDHSGKYLIAAGQKSHHISVYEIVGEQ  310 (343)
T ss_dssp             EEETTTTEEEEEEECTTSCCEEEEEEEEC---------------SSSCCCEE-ECTTSSEEEEECTTTCEEEEEEEETTT
T ss_pred             EEecCCCEEEEEEEcCCCCceEEeeeecC---------------CCccceEE-ECCCCCEEEEecCCCCeEEEEEEcCCC
Confidence            8998889999988 3  33 333221110               01378898 45555 589998878888887554  2


Q ss_pred             CceE---EeccCCCcceEEEEec
Q 011333          231 DDCA---YQYGSSFPLGIAVLLA  250 (488)
Q Consensus       231 ~~~~---~~~~~g~P~GIav~~g  250 (488)
                      ....   .......|.+|++...
T Consensus       311 g~~~~~~~~~~g~~p~~i~~~~~  333 (343)
T 1ri6_A          311 GLLHEKGRYAVGQGPMWVVVNAH  333 (343)
T ss_dssp             TEEEEEEEEECSSSCCEEEEEEE
T ss_pred             ceeeEccccccCCCCeeEEEEcc
Confidence            2111   1222346777777643

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=97.95  E-value=0.0001  Score=72.79  Aligned_cols=110  Identities=12%  Similarity=0.074  Sum_probs=77.2

Q ss_pred             CceEEEEccCCcEEEEEC--CCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEEC
Q 011333           84 EPYSVEVLPGGELLILDS--ANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADT  161 (488)
Q Consensus        84 ~P~GIaVd~dG~LYVaD~--~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~  161 (488)
                      .|+||+++++|.||++..  +.+.|+++|..++   ++....--.       .       -..+.||+++ .+.||+++.
T Consensus        22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg---~v~~~i~l~-------~-------~~fgeGi~~~-g~~lyv~t~   83 (266)
T 2iwa_A           22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTG---KVENIHKMD-------D-------SYFGEGLTLL-NEKLYQVVW   83 (266)
T ss_dssp             CEEEEEECSTTEEEEEECSTTTCEEEEEETTTC---CEEEEEECC-------T-------TCCEEEEEEE-TTEEEEEET
T ss_pred             CcccEEEeCCCeEEEECCCCCCCEEEEEECCCC---CEEEEEecC-------C-------CcceEEEEEe-CCEEEEEEe
Confidence            589999999899999974  4789999999863   322221110       0       1234578887 458999999


Q ss_pred             CCCEEEEEcCCC---cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCC
Q 011333          162 MNMAIRKISDSG---VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFD  231 (488)
Q Consensus       162 ~N~rIrkid~gg---VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g~  231 (488)
                      .+++|.+||...   +.+|.-+ .+                .+++|+  .+.+.|||+| +.+.|..|++...
T Consensus        84 ~~~~v~viD~~t~~v~~~i~~g-~~----------------~g~glt--~Dg~~l~vs~-gs~~l~viD~~t~  136 (266)
T 2iwa_A           84 LKNIGFIYDRRTLSNIKNFTHQ-MK----------------DGWGLA--TDGKILYGSD-GTSILYEIDPHTF  136 (266)
T ss_dssp             TCSEEEEEETTTTEEEEEEECC-SS----------------SCCEEE--ECSSSEEEEC-SSSEEEEECTTTC
T ss_pred             cCCEEEEEECCCCcEEEEEECC-CC----------------CeEEEE--ECCCEEEEEC-CCCeEEEEECCCC
Confidence            999999999433   3444322 00                245666  3467899999 6889999998763

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=97.87  E-value=0.00037  Score=66.60  Aligned_cols=114  Identities=10%  Similarity=0.003  Sum_probs=77.7

Q ss_pred             CceEEEEccCCc-EEEEECCCCeEEEEeCC--CCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCc-EEEE
Q 011333           84 EPYSVEVLPGGE-LLILDSANSNLYRISSS--LSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-IYIA  159 (488)
Q Consensus        84 ~P~GIaVd~dG~-LYVaD~~n~rI~kid~~--g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~-LYVA  159 (488)
                      .|.+++++++|. ||+++..++.|..++.+  +   +....+.... .             -..|.+|+++++|+ ||++
T Consensus        39 ~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~---~~~~~~~~~~-~-------------~~~~~~~~~s~dg~~l~~~  101 (343)
T 1ri6_A           39 QVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDD---GALTFAAESA-L-------------PGSLTHISTDHQGQFVFVG  101 (343)
T ss_dssp             CCCCEEECTTSSEEEEEETTTTEEEEEEECTTT---CCEEEEEEEE-C-------------SSCCSEEEECTTSSEEEEE
T ss_pred             CCceEEECCCCCEEEEeecCCCeEEEEEecCCC---Cceeeccccc-c-------------CCCCcEEEEcCCCCEEEEE
Confidence            688999999998 89998877888887665  3   2222221110 0             12589999999997 8899


Q ss_pred             ECCCCEEEEEcC--CCc-EEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCC-eEEEEECCCCeEEEEEcCC
Q 011333          160 DTMNMAIRKISD--SGV-TTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSC-SLLVIDRGNRAIREIQLHF  230 (488)
Q Consensus       160 D~~N~rIrkid~--ggV-ttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G-~LYVaD~gN~rIrkI~~~g  230 (488)
                      +...+.|..++-  +.. ..+....               ....|.++++ +++| .||+++...+.|+.+++..
T Consensus       102 ~~~~~~i~~~d~~~~~~~~~~~~~~---------------~~~~~~~~~~-s~dg~~l~~~~~~~~~v~~~d~~~  160 (343)
T 1ri6_A          102 SYNAGNVSVTRLEDGLPVGVVDVVE---------------GLDGCHSANI-SPDNRTLWVPALKQDRICLFTVSD  160 (343)
T ss_dssp             ETTTTEEEEEEEETTEEEEEEEEEC---------------CCTTBCCCEE-CTTSSEEEEEEGGGTEEEEEEECT
T ss_pred             ecCCCeEEEEECCCCcccccccccc---------------CCCCceEEEE-CCCCCEEEEecCCCCEEEEEEecC
Confidence            988888888872  221 1111100               0124788884 5555 6999998889999999875

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=97.85  E-value=0.00041  Score=68.71  Aligned_cols=130  Identities=15%  Similarity=0.019  Sum_probs=87.0

Q ss_pred             ceEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEECCCC
Q 011333           85 PYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNM  164 (488)
Q Consensus        85 P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~N~  164 (488)
                      ..||+++ ++.||+++..+++|+++|.++..  .+.++.-.                 ..+.|++.| .+.||++| +.+
T Consensus        98 geGit~~-g~~Ly~ltw~~~~v~V~D~~Tl~--~~~ti~~~-----------------~eGwGLt~D-g~~L~vSd-Gs~  155 (268)
T 3nok_A           98 AEGLASD-GERLYQLTWTEGLLFTWSGMPPQ--RERTTRYS-----------------GEGWGLCYW-NGKLVRSD-GGT  155 (268)
T ss_dssp             EEEEEEC-SSCEEEEESSSCEEEEEETTTTE--EEEEEECS-----------------SCCCCEEEE-TTEEEEEC-SSS
T ss_pred             eeEEEEe-CCEEEEEEccCCEEEEEECCcCc--EEEEEeCC-----------------CceeEEecC-CCEEEEEC-CCC
Confidence            3567775 45899999999999999987521  22233211                 125678877 45899999 589


Q ss_pred             EEEEEcCC--C-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCceEE-ec---
Q 011333          165 AIRKISDS--G-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCAY-QY---  237 (488)
Q Consensus       165 rIrkid~g--g-VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g~~~~~-~~---  237 (488)
                      +|+.+|..  . +.+|.-+..+.            .+..++.+.++  +|.||+..+..+.|.+||+....+.. ..   
T Consensus       156 ~l~~iDp~T~~v~~~I~V~~~g~------------~v~~lNeLe~~--dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~  221 (268)
T 3nok_A          156 MLTFHEPDGFALVGAVQVKLRGQ------------PVELINELECA--NGVIYANIWHSSDVLEIDPATGTVVGVIDASA  221 (268)
T ss_dssp             EEEEECTTTCCEEEEEECEETTE------------ECCCEEEEEEE--TTEEEEEETTCSEEEEECTTTCBEEEEEECHH
T ss_pred             EEEEEcCCCCeEEEEEEeCCCCc------------ccccccccEEe--CCEEEEEECCCCeEEEEeCCCCcEEEEEECCC
Confidence            99999933  3 33443221111            24456778865  68999999999999999997654432 11   


Q ss_pred             -----------cCCCcceEEEEec
Q 011333          238 -----------GSSFPLGIAVLLA  250 (488)
Q Consensus       238 -----------~~g~P~GIav~~g  250 (488)
                                 ....|.|||.+..
T Consensus       222 L~~~~~~~~~~~~~vlNGIA~dp~  245 (268)
T 3nok_A          222 LTRAVAGQVTNPEAVLNGIAVEPG  245 (268)
T ss_dssp             HHHHHTTTCCCTTCCEEEEEECTT
T ss_pred             CcccccccccCcCCceEEEEEcCC
Confidence                       1136789998864

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=97.83  E-value=4.5e-05  Score=80.46  Aligned_cols=121  Identities=12%  Similarity=0.092  Sum_probs=73.7

Q ss_pred             CceEEEEcc----CCcEEEEECC------------CCeEEEEeCCCC--cccccEEEecCCCCccccCCCcccccccCCc
Q 011333           84 EPYSVEVLP----GGELLILDSA------------NSNLYRISSSLS--LYSRPKLVAGSAEGYSGHVDGKPREARMNHP  145 (488)
Q Consensus        84 ~P~GIaVd~----dG~LYVaD~~------------n~rI~kid~~g~--~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P  145 (488)
                      .+.||+++|    +|.|||+++.            .++|.|++.+..  ......+++.....           ...+.+
T Consensus        78 Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~-----------~~~H~~  146 (454)
T 1cru_A           78 GLLGFAFHPDFKNNPYIYISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPS-----------SKDHQS  146 (454)
T ss_dssp             SEEEEEECTTTTTSCEEEEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECC-----------CSSCCE
T ss_pred             ceeEEEECCCcCcCCEEEEEEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCC-----------CCCCCC
Confidence            567999998    7899999864            468999986431  11222333321100           114568


Q ss_pred             ceEEEcCCCcEEEEECC--------------------------------CCEEEEEc-CCCcEEEeCCccCCCCCCCCCC
Q 011333          146 KGLTVDDRGNIYIADTM--------------------------------NMAIRKIS-DSGVTTIAGGKWGRGGGHVDGP  192 (488)
Q Consensus       146 ~GIAvD~dG~LYVAD~~--------------------------------N~rIrkid-~ggVttIaGg~~g~~~g~~dG~  192 (488)
                      .+|++++||.|||+-..                                ..+|.+|+ ++.+.  .+....   +.....
T Consensus       147 ~~l~f~pDG~Lyv~~Gd~~~~~~~~~~~~~~~~~~p~~~~~~aq~~~~~~G~IlRi~~dG~ip--~~Npf~---~~~~~e  221 (454)
T 1cru_A          147 GRLVIGPDQKIYYTIGDQGRNQLAYLFLPNQAQHTPTQQELNGKDYHTYMGKVLRLNLDGSIP--KDNPSF---NGVVSH  221 (454)
T ss_dssp             EEEEECTTSCEEEEECCTTTTSGGGTTSCCCTTCCCCHHHHHTTCCTTCSSEEEEECTTSCCC--TTCCEE---TTEECS
T ss_pred             CeEeECCCCeEEEEECCCCCCCccccccccccccccccccccccCCCCCCeeEEEEeCCCCCC--CCCCCC---CCCcce
Confidence            99999999999998432                                35788888 54421  000000   000000


Q ss_pred             cccccCCCCCeeEEECCCCeEEEEECCCC
Q 011333          193 SEDAKFSNDFDVVYIGSSCSLLVIDRGNR  221 (488)
Q Consensus       193 ~~~a~f~~P~gIa~vd~~G~LYVaD~gN~  221 (488)
                      .-..-+.+|++++ ++++|.||++|.+.+
T Consensus       222 i~a~G~RNp~gla-~dp~G~L~~~d~g~~  249 (454)
T 1cru_A          222 IYTLGHRNPQGLA-FTPNGKLLQSEQGPN  249 (454)
T ss_dssp             EEEBCCSEEEEEE-ECTTSCEEEEEECSS
T ss_pred             EEEECCCCcceEE-ECCCCCEEEEecCCC
Confidence            1122367899999 677899999997654

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=97.79  E-value=0.00076  Score=71.49  Aligned_cols=162  Identities=13%  Similarity=0.125  Sum_probs=98.5

Q ss_pred             CCceeEEeecCCCCCCCceEEEEccCCc--EEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCc
Q 011333           68 SGYTVETVFDGSKLGIEPYSVEVLPGGE--LLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHP  145 (488)
Q Consensus        68 dG~~~~~~~~G~~~l~~P~GIaVd~dG~--LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P  145 (488)
                      .|+.++.+..+   |..|++|++.+||.  |||++. .++|++++.++...  ...+++-..-.   ..|. ...-...+
T Consensus         2 ~gf~v~~va~g---L~~P~~~a~~pdG~~rl~V~er-~G~i~~~~~~g~~~--~~~~~~~~~~~---~~g~-~~~~e~Gl   71 (463)
T 2wg3_C            2 NCFCIQEVVSG---LRQPVGALHSGDGSQRLFILEK-EGYVKILTPEGEIF--KEPYLDIHKLV---QSGI-KGGDERGL   71 (463)
T ss_dssp             CCEEEEEEEEE---ESSEEEEECCSSSSCCEEEEET-TTEEEEECTTSCBC--SSCSEECTTTB---CCCC-SSSCCCSE
T ss_pred             CceEEEEeccC---CCCceEEEECCCCCeEEEEEeC-CceEEEEeCCCCee--eeeecCCccee---ccCc-cccCCCcc
Confidence            35556665553   56999999999985  999997 47999998765311  11122211000   0000 00013456


Q ss_pred             ceEEEcCC----CcEEEEECCC------------CEEEEEc-C-C--------CcEEEeCCccCCCCCCCCCCcccccCC
Q 011333          146 KGLTVDDR----GNIYIADTMN------------MAIRKIS-D-S--------GVTTIAGGKWGRGGGHVDGPSEDAKFS  199 (488)
Q Consensus       146 ~GIAvD~d----G~LYVAD~~N------------~rIrkid-~-g--------gVttIaGg~~g~~~g~~dG~~~~a~f~  199 (488)
                      .|||++++    |.|||+-+..            .+|.++. . +        ...+|......            ..-.
T Consensus        72 lgia~~P~f~~n~~lYv~yt~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~------------~~~H  139 (463)
T 2wg3_C           72 LSLAFHPNYKKNGKLYVSYTTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAEL------------HRKH  139 (463)
T ss_dssp             EEEEECTTHHHHCEEEEEEEECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEES------------SSSS
T ss_pred             eeeEeCCCCcCCCEEEEEEeCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCC------------CCcc
Confidence            79999985    8899985421            3777766 2 1        12333321110            0123


Q ss_pred             CCCeeEEECCCCeEEEEE--CC---------------CCeEEEEEcCCC---------------------ceEEeccCCC
Q 011333          200 NDFDVVYIGSSCSLLVID--RG---------------NRAIREIQLHFD---------------------DCAYQYGSSF  241 (488)
Q Consensus       200 ~P~gIa~vd~~G~LYVaD--~g---------------N~rIrkI~~~g~---------------------~~~~~~~~g~  241 (488)
                      .-..|+ ++++|.|||+-  .+               .+.|.+|++++.                     ...+..+.--
T Consensus       140 ~g~~l~-fgpDG~LYv~~Gd~~~~~~~~~~~q~~~~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a~G~RN  218 (463)
T 2wg3_C          140 LGGQLL-FGPDGFLYIILGDGMITLDDMEEMDGLSDFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFAHGLHD  218 (463)
T ss_dssp             CEEEEE-ECTTSCEEEEECCTTCCHHHHHHCTTCCSCTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEEECCSS
T ss_pred             cCCcEe-ECCCCcEEEEeCCCCCCCCccccccCcCCCCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEEECCCC
Confidence            345677 78999999983  32               357999999983                     2345667778


Q ss_pred             cceEEEEecCC
Q 011333          242 PLGIAVLLAAG  252 (488)
Q Consensus       242 P~GIav~~g~g  252 (488)
                      |.|++++...+
T Consensus       219 p~gla~dp~tg  229 (463)
T 2wg3_C          219 PGRCAVDRHPT  229 (463)
T ss_dssp             CCBEEEESSCS
T ss_pred             cceEEECCCCC
Confidence            99999997643

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=97.78  E-value=0.00078  Score=66.49  Aligned_cols=130  Identities=12%  Similarity=0.017  Sum_probs=86.4

Q ss_pred             ceEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEECCCC
Q 011333           85 PYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNM  164 (488)
Q Consensus        85 P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~N~  164 (488)
                      ..||+++ ++.||+++..++++.++|+++..  .+.++.-.                 ..+.|++.| .+.||++|. .+
T Consensus        89 geGit~~-g~~ly~ltw~~~~v~v~D~~t~~--~~~ti~~~-----------------~eG~glt~d-g~~L~~SdG-s~  146 (262)
T 3nol_A           89 GEGISDW-KDKIVGLTWKNGLGFVWNIRNLR--QVRSFNYD-----------------GEGWGLTHN-DQYLIMSDG-TP  146 (262)
T ss_dssp             EEEEEEE-TTEEEEEESSSSEEEEEETTTCC--EEEEEECS-----------------SCCCCEEEC-SSCEEECCS-SS
T ss_pred             eeEEEEe-CCEEEEEEeeCCEEEEEECccCc--EEEEEECC-----------------CCceEEecC-CCEEEEECC-CC
Confidence            3567775 46899999999999999997522  22333211                 135678876 468999995 89


Q ss_pred             EEEEEcCC--C-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCceEE-ecc--
Q 011333          165 AIRKISDS--G-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCAY-QYG--  238 (488)
Q Consensus       165 rIrkid~g--g-VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g~~~~~-~~~--  238 (488)
                      +|.++|..  . +.+|.-+..+            ..+..++.+.++  +|.||+.....+.|.+||+....+.. ...  
T Consensus       147 ~i~~iDp~T~~v~~~I~V~~~g------------~~~~~lNELe~~--~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~  212 (262)
T 3nol_A          147 VLRFLDPESLTPVRTITVTAHG------------EELPELNELEWV--DGEIFANVWQTNKIVRIDPETGKVTGIIDLNG  212 (262)
T ss_dssp             EEEEECTTTCSEEEEEECEETT------------EECCCEEEEEEE--TTEEEEEETTSSEEEEECTTTCBEEEEEECTT
T ss_pred             eEEEEcCCCCeEEEEEEeccCC------------ccccccceeEEE--CCEEEEEEccCCeEEEEECCCCcEEEEEECCc
Confidence            99999943  3 3444322111            124456678765  68999999999999999997654432 111  


Q ss_pred             -----------CCCcceEEEEec
Q 011333          239 -----------SSFPLGIAVLLA  250 (488)
Q Consensus       239 -----------~g~P~GIav~~g  250 (488)
                                 ...|.|||.+..
T Consensus       213 L~~~~~~~~~~~~vlNGIA~dp~  235 (262)
T 3nol_A          213 ILAEAGPLPSPIDVLNGIAWDKE  235 (262)
T ss_dssp             GGGGSCSCCSSCCCEEEEEEETT
T ss_pred             CccccccccCcCCceEEEEEcCC
Confidence                       136788998864

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=97.78  E-value=0.00092  Score=65.25  Aligned_cols=130  Identities=18%  Similarity=0.119  Sum_probs=86.2

Q ss_pred             ceEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEECCCC
Q 011333           85 PYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNM  164 (488)
Q Consensus        85 P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~N~  164 (488)
                      ..|++++ ++.||+++..+++|+++|.++.  ..+.++.-.                 ..+.||+.| .+.||++|. .+
T Consensus        67 geGi~~~-~~~ly~ltw~~~~v~v~D~~tl--~~~~ti~~~-----------------~~Gwglt~d-g~~L~vSdg-s~  124 (243)
T 3mbr_X           67 GAGIVAW-RDRLIQLTWRNHEGFVYDLATL--TPRARFRYP-----------------GEGWALTSD-DSHLYMSDG-TA  124 (243)
T ss_dssp             EEEEEEE-TTEEEEEESSSSEEEEEETTTT--EEEEEEECS-----------------SCCCEEEEC-SSCEEEECS-SS
T ss_pred             eeEEEEe-CCEEEEEEeeCCEEEEEECCcC--cEEEEEeCC-----------------CCceEEeeC-CCEEEEECC-CC
Confidence            4567775 5789999999999999998752  122333211                 135788876 468999995 89


Q ss_pred             EEEEEcCCC---cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCceEE-ec---
Q 011333          165 AIRKISDSG---VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCAY-QY---  237 (488)
Q Consensus       165 rIrkid~gg---VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g~~~~~-~~---  237 (488)
                      +|..+|...   +.+|.-+..+.            .+...+.+.++  +|.||+..+..+.|.+||+....+.. ..   
T Consensus       125 ~l~~iDp~t~~~~~~I~V~~~g~------------~~~~lNeLe~~--~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~  190 (243)
T 3mbr_X          125 VIRKLDPDTLQQVGSIKVTAGGR------------PLDNLNELEWV--NGELLANVWLTSRIARIDPASGKVVAWIDLQA  190 (243)
T ss_dssp             EEEEECTTTCCEEEEEECEETTE------------ECCCEEEEEEE--TTEEEEEETTTTEEEEECTTTCBEEEEEECGG
T ss_pred             eEEEEeCCCCeEEEEEEEccCCc------------ccccceeeEEe--CCEEEEEECCCCeEEEEECCCCCEEEEEECCc
Confidence            999999433   34443221111            23455677754  68999999999999999998654432 11   


Q ss_pred             -----------cCCCcceEEEEec
Q 011333          238 -----------GSSFPLGIAVLLA  250 (488)
Q Consensus       238 -----------~~g~P~GIav~~g  250 (488)
                                 ....|.|||.+..
T Consensus       191 l~~~~~~~~~~~~~vlNGIA~d~~  214 (243)
T 3mbr_X          191 LVPDADALTDSTNDVLNGIAFDAE  214 (243)
T ss_dssp             GSTTTTSCCCTTSSCEEEEEEETT
T ss_pred             CccccccccCCcCCceEEEEEcCC
Confidence                       1136788888864

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=97.77  E-value=0.0011  Score=65.34  Aligned_cols=128  Identities=20%  Similarity=0.278  Sum_probs=88.1

Q ss_pred             CceEEEEccCCc-EEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCc-EEEEEC
Q 011333           84 EPYSVEVLPGGE-LLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-IYIADT  161 (488)
Q Consensus        84 ~P~GIaVd~dG~-LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~-LYVAD~  161 (488)
                      .+.+++++++|. ||++....+.|+.++..++   ........                -..+.+++++++|+ ||++..
T Consensus        75 ~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~---~~~~~~~~----------------~~~~~~~~~s~dg~~l~~~~~  135 (391)
T 1l0q_A           75 SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSN---TVAGTVKT----------------GKSPLGLALSPDGKKLYVTNN  135 (391)
T ss_dssp             SEEEEEECTTSSEEEEEETTTTEEEEEETTTT---EEEEEEEC----------------SSSEEEEEECTTSSEEEEEET
T ss_pred             CccceEECCCCCEEEEEECCCCEEEEEECCCC---eEEEEEeC----------------CCCcceEEECCCCCEEEEEeC
Confidence            788999999887 8889888899999998863   32222221                12478999999997 779998


Q ss_pred             CCCEEEEEc-C-CCc-EEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCceEEe-c
Q 011333          162 MNMAIRKIS-D-SGV-TTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCAYQ-Y  237 (488)
Q Consensus       162 ~N~rIrkid-~-ggV-ttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g~~~~~~-~  237 (488)
                      .++.|+.++ . +.+ .++..+                  ..|.++++.+....||++...++.|+.+++....+... .
T Consensus       136 ~~~~v~~~d~~~~~~~~~~~~~------------------~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~  197 (391)
T 1l0q_A          136 GDKTVSVINTVTKAVINTVSVG------------------RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK  197 (391)
T ss_dssp             TTTEEEEEETTTTEEEEEEECC------------------SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             CCCEEEEEECCCCcEEEEEecC------------------CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe
Confidence            899999999 3 333 333221                  14678884444446889998899999999886554432 2


Q ss_pred             cCCCcceEEEE
Q 011333          238 GSSFPLGIAVL  248 (488)
Q Consensus       238 ~~g~P~GIav~  248 (488)
                      ....+.++++.
T Consensus       198 ~~~~~~~~~~~  208 (391)
T 1l0q_A          198 VEAAPSGIAVN  208 (391)
T ss_dssp             CSSEEEEEEEC
T ss_pred             cCCCccceEEC
Confidence            22345555554

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=97.76  E-value=0.00051  Score=67.36  Aligned_cols=125  Identities=8%  Similarity=0.150  Sum_probs=81.0

Q ss_pred             eEEEEccCC-cEEEEECC-CCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcC-CCcEEEEECC
Q 011333           86 YSVEVLPGG-ELLILDSA-NSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDD-RGNIYIADTM  162 (488)
Q Consensus        86 ~GIaVd~dG-~LYVaD~~-n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~-dG~LYVAD~~  162 (488)
                      .|||+++++ .||++.-. ...|+.++.-... ..+..+ .... ..       ....+..+.+|++|+ .|.+||....
T Consensus       124 EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~-~~l~i~-~~~~-~~-------~~~~~~d~S~l~~dp~tg~lliLS~~  193 (255)
T 3qqz_A          124 EGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSS-NELHIS-KDKA-LQ-------RQFTLDDVSGAEFNQQKNTLLVLSHE  193 (255)
T ss_dssp             EEEEEETTTTEEEEEEESSSEEEEEEESTTCS-SCCEEE-ECHH-HH-------HTCCSSCCCEEEEETTTTEEEEEETT
T ss_pred             ceEEEeCCCCEEEEEECcCCceEEEEcccccC-Cceeee-cchh-hc-------cccccCCceeEEEcCCCCeEEEEECC
Confidence            899999976 69988644 3488888721000 112222 1100 00       012256799999998 6789999999


Q ss_pred             CCEEEEEc-CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcC
Q 011333          163 NMAIRKIS-DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLH  229 (488)
Q Consensus       163 N~rIrkid-~ggVttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~  229 (488)
                      +++|..+| +|.+........+.       ......+..|.||| +|++|+|||+.-. +.+++|...
T Consensus       194 s~~L~~~d~~g~~~~~~~L~~g~-------~~l~~~~~qpEGia-~d~~G~lyIvsE~-n~~y~f~~~  252 (255)
T 3qqz_A          194 SRALQEVTLVGEVIGEMSLTKGS-------RGLSHNIKQAEGVA-MDASGNIYIVSEP-NRFYRFTPQ  252 (255)
T ss_dssp             TTEEEEECTTCCEEEEEECSTTG-------GGCSSCCCSEEEEE-ECTTCCEEEEETT-TEEEEEEC-
T ss_pred             CCeEEEEcCCCCEEEEEEcCCcc-------CCcccccCCCCeeE-ECCCCCEEEEcCC-ceEEEEEec
Confidence            99999999 66653333221111       01123477999999 7999999999766 599999865

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=97.73  E-value=0.0013  Score=65.44  Aligned_cols=149  Identities=17%  Similarity=0.064  Sum_probs=87.7

Q ss_pred             CCceEEEEccCCc-EEEEECCCCeEEEEeCC-CCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCc-EEEE
Q 011333           83 IEPYSVEVLPGGE-LLILDSANSNLYRISSS-LSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-IYIA  159 (488)
Q Consensus        83 ~~P~GIaVd~dG~-LYVaD~~n~rI~kid~~-g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~-LYVA  159 (488)
                      ..|+++++++||. ||++|.+.++|+.++.+ +   +++..+... .. .         ..-..|.+++++++|. ||++
T Consensus       145 ~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~---g~~~~~~~~-~~-~---------~~g~~p~~~~~spdg~~l~v~  210 (365)
T 1jof_A          145 TGIHGMVFDPTETYLYSADLTANKLWTHRKLAS---GEVELVGSV-DA-P---------DPGDHPRWVAMHPTGNYLYAL  210 (365)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEEECTT---SCEEEEEEE-EC-S---------STTCCEEEEEECTTSSEEEEE
T ss_pred             CcceEEEECCCCCEEEEEcCCCCEEEEEEECCC---CCEEEeeeE-ec-C---------CCCCCCCEeEECCCCCEEEEE
Confidence            4789999999997 89999888999999876 4   333222110 00 0         0023599999999994 8999


Q ss_pred             ECCCCEEEEEc-C---CCcE----EEeCCccCCCCCCCCCCcccccCCCCCeeE-EECCCCeEEEEECCCC-----eEEE
Q 011333          160 DTMNMAIRKIS-D---SGVT----TIAGGKWGRGGGHVDGPSEDAKFSNDFDVV-YIGSSCSLLVIDRGNR-----AIRE  225 (488)
Q Consensus       160 D~~N~rIrkid-~---ggVt----tIaGg~~g~~~g~~dG~~~~a~f~~P~gIa-~vd~~G~LYVaD~gN~-----rIrk  225 (488)
                      +..++.|..++ +   +.+.    ++.....+. .+. .+...  ....|.+++ +.++...||+++++.+     .|..
T Consensus       211 ~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~-~g~-~~~~~--~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v  286 (365)
T 1jof_A          211 MEAGNRICEYVIDPATHMPVYTHHSFPLIPPGI-PDR-DPETG--KGLYRADVCALTFSGKYMFASSRANKFELQGYIAG  286 (365)
T ss_dssp             ETTTTEEEEEEECTTTCCEEEEEEEEESSCTTC-CCB-CTTTS--SBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEE
T ss_pred             ECCCCeEEEEEEeCCCCcEEEccceEEcCCCCc-CCc-ccccc--cccccccEEEECCCCCEEEEECCCCCCCCCCeEEE
Confidence            98788888775 2   3332    222211110 000 00000  122578888 6444446899998766     8888


Q ss_pred             EEcC--CCceE---Eec-cCCCcceEEEEe
Q 011333          226 IQLH--FDDCA---YQY-GSSFPLGIAVLL  249 (488)
Q Consensus       226 I~~~--g~~~~---~~~-~~g~P~GIav~~  249 (488)
                      ++++  +....   ... ....|.++++..
T Consensus       287 ~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp  316 (365)
T 1jof_A          287 FKLRDCGSIEKQLFLSPTPTSGGHSNAVSP  316 (365)
T ss_dssp             EEECTTSCEEEEEEEEECSSCCTTCCCEEE
T ss_pred             EEECCCCCEEEeeeeeecCCCCcccceecC
Confidence            8874  32221   111 223567777665

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=97.72  E-value=0.0013  Score=64.50  Aligned_cols=153  Identities=15%  Similarity=0.148  Sum_probs=97.5

Q ss_pred             CCceEEEEccCCcEEEEECCCCeEEEEeCCCCcccccE--EEecCCCCccccCCCcccccccCCcceEEEcCCC-cEEEE
Q 011333           83 IEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPK--LVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRG-NIYIA  159 (488)
Q Consensus        83 ~~P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~--tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG-~LYVA  159 (488)
                      ..+.||+++++|.++|++..+++|+.++.+..  +.+.  ......  . +.      ...=....|||+|+++ .||++
T Consensus        70 ~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~--~~i~~~~~~~~~--~-~~------~~~N~g~EGLA~d~~~~~L~va  138 (255)
T 3qqz_A           70 KDLETIEYIGDNQFVISDERDYAIYVISLTPN--SEVKILKKIKIP--L-QE------SPTNCGFEGLAYSRQDHTFWFF  138 (255)
T ss_dssp             SSEEEEEECSTTEEEEEETTTTEEEEEEECTT--CCEEEEEEEECC--C-SS------CCCSSCCEEEEEETTTTEEEEE
T ss_pred             CChHHeEEeCCCEEEEEECCCCcEEEEEcCCC--Ceeeeeeeeccc--c-cc------ccccCCcceEEEeCCCCEEEEE
Confidence            47999999999999999988999998875532  2211  111110  0 00      0001235899999987 68887


Q ss_pred             ECC-CCEEEEEc---CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCceE
Q 011333          160 DTM-NMAIRKIS---DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCA  234 (488)
Q Consensus       160 D~~-N~rIrkid---~gg-VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g~~~~  234 (488)
                      --. ..+|..++   .+. ++.+. ...         ......+..+.+|++.+..++|||....+++|..++..|....
T Consensus       139 ~E~~p~~i~~~~g~~~~~~l~i~~-~~~---------~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~~~~  208 (255)
T 3qqz_A          139 KEKNPIEVYKVNGLLSSNELHISK-DKA---------LQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGEVIG  208 (255)
T ss_dssp             EESSSEEEEEEESTTCSSCCEEEE-CHH---------HHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCCEEE
T ss_pred             ECcCCceEEEEcccccCCceeeec-chh---------hccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCCEEE
Confidence            644 34788887   111 22221 100         0001124568999988889999999999999999999997554


Q ss_pred             Eecc----------CCCcceEEEEecCCceEEEE
Q 011333          235 YQYG----------SSFPLGIAVLLAAGFFGYML  258 (488)
Q Consensus       235 ~~~~----------~g~P~GIav~~g~g~~Gy~~  258 (488)
                      ...-          ...|.|||++..+  .-|+.
T Consensus       209 ~~~L~~g~~~l~~~~~qpEGia~d~~G--~lyIv  240 (255)
T 3qqz_A          209 EMSLTKGSRGLSHNIKQAEGVAMDASG--NIYIV  240 (255)
T ss_dssp             EEECSTTGGGCSSCCCSEEEEEECTTC--CEEEE
T ss_pred             EEEcCCccCCcccccCCCCeeEECCCC--CEEEE
Confidence            4221          1378999999652  35554

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=97.66  E-value=0.00069  Score=67.40  Aligned_cols=133  Identities=13%  Similarity=0.055  Sum_probs=79.2

Q ss_pred             CCCceEEEEccCCc-EEEEECCCCeEEEEeCCCCcccccE----EEecCCCCccccCCCcccccccCCcceEE-EcCCCc
Q 011333           82 GIEPYSVEVLPGGE-LLILDSANSNLYRISSSLSLYSRPK----LVAGSAEGYSGHVDGKPREARMNHPKGLT-VDDRGN  155 (488)
Q Consensus        82 l~~P~GIaVd~dG~-LYVaD~~n~rI~kid~~g~~~g~i~----tvaG~~~G~~G~~dG~a~~a~Ln~P~GIA-vD~dG~  155 (488)
                      ...|.++++++||. ||+++..++.|..++.+... |...    .+.....+..|+ .+..  .....|.+|+ ++++|+
T Consensus       192 g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~-g~~~~~~~~~~~~~~~~~g~-~~~~--~~~~~~~~i~~~spdG~  267 (365)
T 1jof_A          192 GDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPAT-HMPVYTHHSFPLIPPGIPDR-DPET--GKGLYRADVCALTFSGK  267 (365)
T ss_dssp             TCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTT-CCEEEEEEEEESSCTTCCCB-CTTT--SSBSEEEEEEEECTTSS
T ss_pred             CCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCC-CcEEEccceEEcCCCCcCCc-cccc--ccccccccEEEECCCCC
Confidence            34699999999995 88998877888777543100 2221    121111111111 0000  0122588999 999996


Q ss_pred             -EEEEECCCC-----EEEEEc---CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEEC---CCCeEEEEECCCCeE
Q 011333          156 -IYIADTMNM-----AIRKIS---DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIG---SSCSLLVIDRGNRAI  223 (488)
Q Consensus       156 -LYVAD~~N~-----rIrkid---~ggVttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd---~~G~LYVaD~gN~rI  223 (488)
                       ||+++...+     +|..++   ++.+..+......             .-..|.++++.+   +...||+++..++.|
T Consensus       268 ~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~-------------~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v  334 (365)
T 1jof_A          268 YMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPT-------------PTSGGHSNAVSPCPWSDEWMAITDDQEGWL  334 (365)
T ss_dssp             EEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEEC-------------SSCCTTCCCEEECTTCTTEEEEECSSSCEE
T ss_pred             EEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeec-------------CCCCcccceecCCCcCCCEEEEEEcCCCeE
Confidence             899987655     888776   3445432110000             012467788555   466899999888889


Q ss_pred             EEEEcCCC
Q 011333          224 REIQLHFD  231 (488)
Q Consensus       224 rkI~~~g~  231 (488)
                      ..++.+..
T Consensus       335 ~v~~~~~~  342 (365)
T 1jof_A          335 EIYRWKDE  342 (365)
T ss_dssp             EEEEEETT
T ss_pred             EEEEEchh
Confidence            88887765

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=97.65  E-value=0.00035  Score=67.14  Aligned_cols=117  Identities=9%  Similarity=-0.020  Sum_probs=77.8

Q ss_pred             ceEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCc-EEEEECCC
Q 011333           85 PYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-IYIADTMN  163 (488)
Q Consensus        85 P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~-LYVAD~~N  163 (488)
                      ++|+++.+++.+|++...++.|++++..++   ++....... .             ...|.+++++++|+ +|+++..+
T Consensus         2 ~~g~~~~~~~~~~v~~~~~~~v~~~d~~~~---~~~~~~~~~-~-------------~~~~~~~~~s~dg~~~~v~~~~~   64 (349)
T 1jmx_B            2 DTGPALKAGHEYMIVTNYPNNLHVVDVASD---TVYKSCVMP-D-------------KFGPGTAMMAPDNRTAYVLNNHY   64 (349)
T ss_dssp             --CCCCCTTCEEEEEEETTTEEEEEETTTT---EEEEEEECS-S-------------CCSSCEEEECTTSSEEEEEETTT
T ss_pred             CccccccCCCEEEEEeCCCCeEEEEECCCC---cEEEEEecC-C-------------CCCCceeEECCCCCEEEEEeCCC
Confidence            356777888999999999999999998753   222221110 0             12488999999996 89999889


Q ss_pred             CEEEEEc-C-CCc-EEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCC-eEEEEECC-----------CCeEEEEEc
Q 011333          164 MAIRKIS-D-SGV-TTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSC-SLLVIDRG-----------NRAIREIQL  228 (488)
Q Consensus       164 ~rIrkid-~-ggV-ttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G-~LYVaD~g-----------N~rIrkI~~  228 (488)
                      +.|..++ . +.+ .++......           ...-..|.++++ +++| .||+++..           .+.|+.+++
T Consensus        65 ~~i~~~d~~t~~~~~~~~~~~~~-----------~~~~~~~~~~~~-spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~  132 (349)
T 1jmx_B           65 GDIYGIDLDTCKNTFHANLSSVP-----------GEVGRSMYSFAI-SPDGKEVYATVNPTQRLNDHYVVKPPRLEVFST  132 (349)
T ss_dssp             TEEEEEETTTTEEEEEEESCCST-----------TEEEECSSCEEE-CTTSSEEEEEEEEEEECSSCEEECCCEEEEEEG
T ss_pred             CcEEEEeCCCCcEEEEEEccccc-----------ccccccccceEE-CCCCCEEEEEcccccccccccccCCCeEEEEEC
Confidence            9999999 3 333 333221100           001235788984 5555 78888854           579999998


Q ss_pred             CC
Q 011333          229 HF  230 (488)
Q Consensus       229 ~g  230 (488)
                      ..
T Consensus       133 ~~  134 (349)
T 1jmx_B          133 AD  134 (349)
T ss_dssp             GG
T ss_pred             CC
Confidence            64

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=97.64  E-value=0.0011  Score=65.32  Aligned_cols=126  Identities=14%  Similarity=0.064  Sum_probs=80.1

Q ss_pred             CceEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEECCC
Q 011333           84 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMN  163 (488)
Q Consensus        84 ~P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~N  163 (488)
                      .++|++.| .+.||++|. .++|+.+|+.+..  .+..+.=   +.    +|    ..+..++.+... +|.||++....
T Consensus       128 eG~glt~d-g~~L~~SdG-s~~i~~iDp~T~~--v~~~I~V---~~----~g----~~~~~lNELe~~-~G~lyan~w~~  191 (262)
T 3nol_A          128 EGWGLTHN-DQYLIMSDG-TPVLRFLDPESLT--PVRTITV---TA----HG----EELPELNELEWV-DGEIFANVWQT  191 (262)
T ss_dssp             CCCCEEEC-SSCEEECCS-SSEEEEECTTTCS--EEEEEEC---EE----TT----EECCCEEEEEEE-TTEEEEEETTS
T ss_pred             CceEEecC-CCEEEEECC-CCeEEEEcCCCCe--EEEEEEe---cc----CC----ccccccceeEEE-CCEEEEEEccC
Confidence            45566653 356999995 7899999998532  2222211   00    11    125667778876 79999999999


Q ss_pred             CEEEEEc--CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcC
Q 011333          164 MAIRKIS--DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLH  229 (488)
Q Consensus       164 ~rIrkid--~ggVttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~  229 (488)
                      +.|.+||  ++.|.-......-.    ............|+|||+.+..+.|||+...=..+.+|.+.
T Consensus       192 ~~I~vIDp~tG~V~~~Id~~~L~----~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~Wp~~~ev~~~  255 (262)
T 3nol_A          192 NKIVRIDPETGKVTGIIDLNGIL----AEAGPLPSPIDVLNGIAWDKEHHRLFVTGKLWPKVFEITLT  255 (262)
T ss_dssp             SEEEEECTTTCBEEEEEECTTGG----GGSCSCCSSCCCEEEEEEETTTTEEEEEETTCSEEEEEEEE
T ss_pred             CeEEEEECCCCcEEEEEECCcCc----cccccccCcCCceEEEEEcCCCCEEEEECCCCCceEEEEEe
Confidence            9999999  45554333211000    00000112245789999877789999999877788887754

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=97.62  E-value=0.0039  Score=61.23  Aligned_cols=112  Identities=15%  Similarity=0.347  Sum_probs=80.4

Q ss_pred             CceEEEEccCCc-EEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCc-EEEEEC
Q 011333           84 EPYSVEVLPGGE-LLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-IYIADT  161 (488)
Q Consensus        84 ~P~GIaVd~dG~-LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~-LYVAD~  161 (488)
                      .|.+++++++|. ||++...++.|+.++..+   +++......                -..+.+++++++|+ ||++..
T Consensus        33 ~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~---~~~~~~~~~----------------~~~v~~~~~spdg~~l~~~~~   93 (391)
T 1l0q_A           33 NPMGAVISPDGTKVYVANAHSNDVSIIDTAT---NNVIATVPA----------------GSSPQGVAVSPDGKQVYVTNM   93 (391)
T ss_dssp             SEEEEEECTTSSEEEEEEGGGTEEEEEETTT---TEEEEEEEC----------------SSSEEEEEECTTSSEEEEEET
T ss_pred             CcceEEECCCCCEEEEECCCCCeEEEEECCC---CeEEEEEEC----------------CCCccceEECCCCCEEEEEEC
Confidence            578999999997 778887888999999875   233222221                11578999999997 889998


Q ss_pred             CCCEEEEEc-C-CCc-EEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCC-eEEEEECCCCeEEEEEcCCCce
Q 011333          162 MNMAIRKIS-D-SGV-TTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSC-SLLVIDRGNRAIREIQLHFDDC  233 (488)
Q Consensus       162 ~N~rIrkid-~-ggV-ttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G-~LYVaD~gN~rIrkI~~~g~~~  233 (488)
                      ..+.|+.++ . +.+ .++...                  ..+.++++ .++| .||++...++.|+.+++....+
T Consensus        94 ~~~~v~v~d~~~~~~~~~~~~~------------------~~~~~~~~-s~dg~~l~~~~~~~~~v~~~d~~~~~~  150 (391)
T 1l0q_A           94 ASSTLSVIDTTSNTVAGTVKTG------------------KSPLGLAL-SPDGKKLYVTNNGDKTVSVINTVTKAV  150 (391)
T ss_dssp             TTTEEEEEETTTTEEEEEEECS------------------SSEEEEEE-CTTSSEEEEEETTTTEEEEEETTTTEE
T ss_pred             CCCEEEEEECCCCeEEEEEeCC------------------CCcceEEE-CCCCCEEEEEeCCCCEEEEEECCCCcE
Confidence            889999999 3 333 333221                  14678884 5555 5789998899999999876544

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=97.54  E-value=0.0018  Score=63.20  Aligned_cols=127  Identities=12%  Similarity=0.092  Sum_probs=81.6

Q ss_pred             CceEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEECCC
Q 011333           84 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMN  163 (488)
Q Consensus        84 ~P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~N  163 (488)
                      .++|++-+ .+.||++|. .++|+.+|+.+..  .+..+. .  +.    +|    ..+..++.|... +|.||++.+..
T Consensus       106 ~Gwglt~d-g~~L~vSdg-s~~l~~iDp~t~~--~~~~I~-V--~~----~g----~~~~~lNeLe~~-~G~lyanvw~s  169 (243)
T 3mbr_X          106 EGWALTSD-DSHLYMSDG-TAVIRKLDPDTLQ--QVGSIK-V--TA----GG----RPLDNLNELEWV-NGELLANVWLT  169 (243)
T ss_dssp             CCCEEEEC-SSCEEEECS-SSEEEEECTTTCC--EEEEEE-C--EE----TT----EECCCEEEEEEE-TTEEEEEETTT
T ss_pred             CceEEeeC-CCEEEEECC-CCeEEEEeCCCCe--EEEEEE-E--cc----CC----cccccceeeEEe-CCEEEEEECCC
Confidence            56777754 457999995 8899999998532  222221 1  00    11    125566777766 89999999999


Q ss_pred             CEEEEEc--CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcC
Q 011333          164 MAIRKIS--DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLH  229 (488)
Q Consensus       164 ~rIrkid--~ggVttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~  229 (488)
                      +.|.+||  +|.|.-......-...  . .........-|+|||+.+..++|||+...=..+.+|.+.
T Consensus       170 ~~I~vIDp~tG~V~~~idl~~l~~~--~-~~~~~~~~~vlNGIA~d~~~~~lfVTGK~wp~~~~v~~~  234 (243)
T 3mbr_X          170 SRIARIDPASGKVVAWIDLQALVPD--A-DALTDSTNDVLNGIAFDAEHDRLFVTGKRWPMLYEIRLT  234 (243)
T ss_dssp             TEEEEECTTTCBEEEEEECGGGSTT--T-TSCCCTTSSCEEEEEEETTTTEEEEEETTCSEEEEEEEC
T ss_pred             CeEEEEECCCCCEEEEEECCcCccc--c-ccccCCcCCceEEEEEcCCCCEEEEECCCCCcEEEEEEe
Confidence            9999999  5555433322111000  0 000012345789999877789999999877888888865

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=97.51  E-value=0.0019  Score=61.40  Aligned_cols=115  Identities=12%  Similarity=0.105  Sum_probs=75.1

Q ss_pred             CceEEEEccCC-cEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCC-cEEEEEC
Q 011333           84 EPYSVEVLPGG-ELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRG-NIYIADT  161 (488)
Q Consensus        84 ~P~GIaVd~dG-~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG-~LYVAD~  161 (488)
                      .|.+++++++| .||+++...+.|++++..++   +.......  +..+        ..-..|.+++++++| .||+++.
T Consensus        35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~---~~~~~~~~--~~~~--------~~~~~~~~~~~s~dg~~l~~~~~  101 (337)
T 1pby_B           35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTG---ETLGRIDL--STPE--------ERVKSLFGAALSPDGKTLAIYES  101 (337)
T ss_dssp             CCCCEEECTTSSEEEEEETTTTEEEEEETTTC---CEEEEEEC--CBTT--------EEEECTTCEEECTTSSEEEEEEE
T ss_pred             CccceEEcCCCCEEEEEeCCCCeEEEEECCCC---CeEeeEEc--CCcc--------cccccccceEECCCCCEEEEEec
Confidence            48899999998 48999988899999998752   32222111  0000        001258899999999 5999862


Q ss_pred             -----------CCCEEEEEc-CC-Cc-EEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCe-EEEEECCCCeEEEE
Q 011333          162 -----------MNMAIRKIS-DS-GV-TTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCS-LLVIDRGNRAIREI  226 (488)
Q Consensus       162 -----------~N~rIrkid-~g-gV-ttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~-LYVaD~gN~rIrkI  226 (488)
                                 .++.|+.++ .. .+ ..+..+                  ..|.+++ ++++|+ ||++   ++.|+.+
T Consensus       102 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~------------------~~~~~~~-~s~dg~~l~~~---~~~i~~~  159 (337)
T 1pby_B          102 PVRLELTHFEVQPTRVALYDAETLSRRKAFEAP------------------RQITMLA-WARDGSKLYGL---GRDLHVM  159 (337)
T ss_dssp             EEEECSSCEEECCCEEEEEETTTTEEEEEEECC------------------SSCCCEE-ECTTSSCEEEE---SSSEEEE
T ss_pred             ccccccccccccCceEEEEECCCCcEEEEEeCC------------------CCcceeE-ECCCCCEEEEe---CCeEEEE
Confidence                       358899999 33 32 333221                  1467888 455554 8888   4678888


Q ss_pred             EcCCCce
Q 011333          227 QLHFDDC  233 (488)
Q Consensus       227 ~~~g~~~  233 (488)
                      ++.....
T Consensus       160 d~~~~~~  166 (337)
T 1pby_B          160 DPEAGTL  166 (337)
T ss_dssp             ETTTTEE
T ss_pred             ECCCCcE
Confidence            8775433

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=97.48  E-value=0.0024  Score=63.74  Aligned_cols=110  Identities=10%  Similarity=0.062  Sum_probs=77.4

Q ss_pred             CceEEEEccCCc-EEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCc-EEEEEC
Q 011333           84 EPYSVEVLPGGE-LLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-IYIADT  161 (488)
Q Consensus        84 ~P~GIaVd~dG~-LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~-LYVAD~  161 (488)
                      .|.+++++++|. ||++....++|+.++..+   +++......                ...|.+++++++|. ||+++.
T Consensus       304 ~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~---~~~~~~~~~----------------~~~~~~~~~s~dg~~l~~~~~  364 (433)
T 3bws_A          304 NKRHIVSGNTENKIYVSDMCCSKIEVYDLKE---KKVQKSIPV----------------FDKPNTIALSPDGKYLYVSCR  364 (433)
T ss_dssp             CEEEEEECSSTTEEEEEETTTTEEEEEETTT---TEEEEEEEC----------------SSSEEEEEECTTSSEEEEEEC
T ss_pred             CcceEEECCCCCEEEEEecCCCEEEEEECCC---CcEEEEecC----------------CCCCCeEEEcCCCCEEEEEec
Confidence            678899999985 999988899999999875   232222221                23478999999996 888887


Q ss_pred             CC--------------CEEEEEc--CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEE
Q 011333          162 MN--------------MAIRKIS--DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIR  224 (488)
Q Consensus       162 ~N--------------~rIrkid--~gg-VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIr  224 (488)
                      .+              +.|+.++  .+. +.++.++                  ..|.++++.++...|++++..++.|+
T Consensus       365 ~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~------------------~~~~~~~~s~dg~~l~~~~~~d~~i~  426 (433)
T 3bws_A          365 GPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAG------------------NQPTGLDVSPDNRYLVISDFLDHQIR  426 (433)
T ss_dssp             CCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECS------------------SSEEEEEECTTSCEEEEEETTTTEEE
T ss_pred             CCCccccccccccccceEEEEEECCCCcEEEEecCC------------------CCCceEEEcCCCCEEEEEECCCCeEE
Confidence            64              3899998  333 3333321                  24788985444446788888789999


Q ss_pred             EEEcCC
Q 011333          225 EIQLHF  230 (488)
Q Consensus       225 kI~~~g  230 (488)
                      .+++++
T Consensus       427 v~~~~~  432 (433)
T 3bws_A          427 VYRRDG  432 (433)
T ss_dssp             EEEETT
T ss_pred             EEEecC
Confidence            988753

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=97.40  E-value=0.0016  Score=64.50  Aligned_cols=106  Identities=11%  Similarity=0.000  Sum_probs=75.5

Q ss_pred             ceEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEECCCC
Q 011333           85 PYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNM  164 (488)
Q Consensus        85 P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~N~  164 (488)
                      -+||.++ ++.||++....++|+++|+.++++  +..+.+.  .              -...||+++ .+.||+++..++
T Consensus        57 tqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv--~~~~l~~--~--------------~FgeGit~~-g~~Ly~ltw~~~  116 (268)
T 3nok_A           57 TQGLVFH-QGHFFESTGHQGTLRQLSLESAQP--VWMERLG--N--------------IFAEGLASD-GERLYQLTWTEG  116 (268)
T ss_dssp             EEEEEEE-TTEEEEEETTTTEEEECCSSCSSC--SEEEECT--T--------------CCEEEEEEC-SSCEEEEESSSC
T ss_pred             cceEEEE-CCEEEEEcCCCCEEEEEECCCCcE--EeEECCC--C--------------cceeEEEEe-CCEEEEEEccCC
Confidence            3799997 589999999999999999986432  1222221  0              013568887 458999999999


Q ss_pred             EEEEEcCCC---cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCC
Q 011333          165 AIRKISDSG---VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFD  231 (488)
Q Consensus       165 rIrkid~gg---VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g~  231 (488)
                      ++.+||...   +.+|.-..                  .+++++ .| .+.||++| +.++|+.||+...
T Consensus       117 ~v~V~D~~Tl~~~~ti~~~~------------------eGwGLt-~D-g~~L~vSd-Gs~~l~~iDp~T~  165 (268)
T 3nok_A          117 LLFTWSGMPPQRERTTRYSG------------------EGWGLC-YW-NGKLVRSD-GGTMLTFHEPDGF  165 (268)
T ss_dssp             EEEEEETTTTEEEEEEECSS------------------CCCCEE-EE-TTEEEEEC-SSSEEEEECTTTC
T ss_pred             EEEEEECCcCcEEEEEeCCC------------------ceeEEe-cC-CCEEEEEC-CCCEEEEEcCCCC
Confidence            999999443   34443211                  357787 33 57999999 6899999998753

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=97.33  E-value=0.0022  Score=61.44  Aligned_cols=115  Identities=12%  Similarity=0.138  Sum_probs=73.7

Q ss_pred             CceEEEEccCCc-EEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCc-EEEEEC
Q 011333           84 EPYSVEVLPGGE-LLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-IYIADT  161 (488)
Q Consensus        84 ~P~GIaVd~dG~-LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~-LYVAD~  161 (488)
                      .|.+++++++|. +|+++..++.|++++..++   +........ ...        ..+-..|.+++++++|. ||+++.
T Consensus        44 ~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~---~~~~~~~~~-~~~--------~~~~~~~~~~~~spdg~~l~~~~~  111 (349)
T 1jmx_B           44 GPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTC---KNTFHANLS-SVP--------GEVGRSMYSFAISPDGKEVYATVN  111 (349)
T ss_dssp             SSCEEEECTTSSEEEEEETTTTEEEEEETTTT---EEEEEEESC-CST--------TEEEECSSCEEECTTSSEEEEEEE
T ss_pred             CCceeEECCCCCEEEEEeCCCCcEEEEeCCCC---cEEEEEEcc-ccc--------ccccccccceEECCCCCEEEEEcc
Confidence            588999999986 8999988899999998752   322222110 000        01123588999999995 888874


Q ss_pred             C-----------CCEEEEEc-CC-Cc----EEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEE
Q 011333          162 M-----------NMAIRKIS-DS-GV----TTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIR  224 (488)
Q Consensus       162 ~-----------N~rIrkid-~g-gV----ttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIr  224 (488)
                      .           ++.|..++ .. .+    .+...                  -..+.+++ ++++|+||+++   +.|+
T Consensus       112 ~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~------------------~~~~~~~~-~s~dg~l~~~~---~~i~  169 (349)
T 1jmx_B          112 PTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPM------------------PRQVYLMR-AADDGSLYVAG---PDIY  169 (349)
T ss_dssp             EEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEEC------------------CSSCCCEE-ECTTSCEEEES---SSEE
T ss_pred             cccccccccccCCCeEEEEECCCccccceeeeccC------------------CCccccee-ECCCCcEEEcc---CcEE
Confidence            3           47888888 32 21    11111                  01356787 56777788853   3488


Q ss_pred             EEEcCCCc
Q 011333          225 EIQLHFDD  232 (488)
Q Consensus       225 kI~~~g~~  232 (488)
                      .+++....
T Consensus       170 ~~d~~~~~  177 (349)
T 1jmx_B          170 KMDVKTGK  177 (349)
T ss_dssp             EECTTTCC
T ss_pred             EEeCCCCc
Confidence            88876543

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=97.28  E-value=0.0032  Score=61.01  Aligned_cols=135  Identities=18%  Similarity=0.206  Sum_probs=80.0

Q ss_pred             eEEeCCCcccccCCceeEEeecCCCCCCCceEEEEccCCcEEEEECCCCeEEEEeCCCCc----ccccEEEecCCCCccc
Q 011333           56 TAITGRPMMKFESGYTVETVFDGSKLGIEPYSVEVLPGGELLILDSANSNLYRISSSLSL----YSRPKLVAGSAEGYSG  131 (488)
Q Consensus        56 ~~iaG~~~~~~~dG~~~~~~~~G~~~l~~P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~----~g~i~tvaG~~~G~~G  131 (488)
                      +.++|+......+.+.......|...+.+-..|+++|+|.||.+  .++.++++++....    .+. .+.+|.. |..+
T Consensus        14 ~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s-~t~IG~~-Gw~~   89 (236)
T 1tl2_A           14 KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGR-AKKIGNG-GWNQ   89 (236)
T ss_dssp             EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHH-CEEEECS-CGGG
T ss_pred             cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEEE--eCCeEEEECCCCCCccccccc-ccEeccc-cccc
Confidence            44555543333334422222223333446779999999999999  56789999985311    111 3444431 2222


Q ss_pred             cCCCcccccccCCcceEEEcCCCcEEEEECCCCEEEEEcC--CCc-------EEEeCCccCCCCCCCCCCcccccCCCCC
Q 011333          132 HVDGKPREARMNHPKGLTVDDRGNIYIADTMNMAIRKISD--SGV-------TTIAGGKWGRGGGHVDGPSEDAKFSNDF  202 (488)
Q Consensus       132 ~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~N~rIrkid~--ggV-------ttIaGg~~g~~~g~~dG~~~~a~f~~P~  202 (488)
                                   =..|.+|++|+||++  .+.+|+|++.  .+-       ++|-.+.+.             .|   .
T Consensus        90 -------------F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~-------------~~---~  138 (236)
T 1tl2_A           90 -------------FQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWS-------------GF---K  138 (236)
T ss_dssp             -------------CSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGG-------------GE---E
T ss_pred             -------------ceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCC-------------ce---E
Confidence                         145999999999999  3599999982  221       222222111             12   4


Q ss_pred             eeEEECCCCeEEEEECCCCeEEEEEc
Q 011333          203 DVVYIGSSCSLLVIDRGNRAIREIQL  228 (488)
Q Consensus       203 gIa~vd~~G~LYVaD~gN~rIrkI~~  228 (488)
                      .|+ ++++|.||-++  .+++++-..
T Consensus       139 ~lf-f~p~G~Lyav~--dg~lyr~~~  161 (236)
T 1tl2_A          139 FLF-FHPNGYLYAVH--GQQFYKALP  161 (236)
T ss_dssp             EEE-ECTTSCEEEEE--TTEEEEECC
T ss_pred             EEE-ECCCceEEEEe--CCcEEecCC
Confidence            455 89999999999  555766443

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=97.27  E-value=0.012  Score=62.75  Aligned_cols=140  Identities=6%  Similarity=-0.055  Sum_probs=91.3

Q ss_pred             CceEEEEccCCc-EEEEECCCCeEEEEeC--CCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcC----CCc-
Q 011333           84 EPYSVEVLPGGE-LLILDSANSNLYRISS--SLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDD----RGN-  155 (488)
Q Consensus        84 ~P~GIaVd~dG~-LYVaD~~n~rI~kid~--~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~----dG~-  155 (488)
                      .|+++++++||. ||+++.. +.|..++.  .+.  ..+.++..                 -..|.+|++++    +|. 
T Consensus       180 ~~~~v~~spdg~~l~v~~~d-~~V~v~D~~~~t~--~~~~~i~~-----------------g~~p~~va~sp~~~~dg~~  239 (543)
T 1nir_A          180 AVHISRMSASGRYLLVIGRD-ARIDMIDLWAKEP--TKVAEIKI-----------------GIEARSVESSKFKGYEDRY  239 (543)
T ss_dssp             TEEEEEECTTSCEEEEEETT-SEEEEEETTSSSC--EEEEEEEC-----------------CSEEEEEEECCSTTCTTTE
T ss_pred             ccceEEECCCCCEEEEECCC-CeEEEEECcCCCC--cEEEEEec-----------------CCCcceEEeCCCcCCCCCE
Confidence            389999999986 8888876 89999998  431  12222221                 12489999999    885 


Q ss_pred             EEEEECCCCEEEEEc--CCC-cEEEeCCccCCCCCCCCCCccccc-CCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCC
Q 011333          156 IYIADTMNMAIRKIS--DSG-VTTIAGGKWGRGGGHVDGPSEDAK-FSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFD  231 (488)
Q Consensus       156 LYVAD~~N~rIrkid--~gg-VttIaGg~~g~~~g~~dG~~~~a~-f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g~  231 (488)
                      ||+++...+.|..+|  .+. +.++.......     ++  .+.. -..+.+|++.+..+.+||+..+.+.|+.++....
T Consensus       240 l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~-----~~--~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~  312 (543)
T 1nir_A          240 TIAGAYWPPQFAIMDGETLEPKQIVSTRGMTV-----DT--QTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDI  312 (543)
T ss_dssp             EEEEEEESSEEEEEETTTCCEEEEEECCEECS-----SS--CCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTS
T ss_pred             EEEEEccCCeEEEEeccccccceeecccCccc-----Cc--cccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCC
Confidence            899998889999999  333 44444321100     00  0000 1246678855557789999999999999998653


Q ss_pred             ce-E--EeccCCCcceEEEEec
Q 011333          232 DC-A--YQYGSSFPLGIAVLLA  250 (488)
Q Consensus       232 ~~-~--~~~~~g~P~GIav~~g  250 (488)
                      .+ .  .......|.+++++..
T Consensus       313 ~~l~~~~i~~~~~~~~~~~spd  334 (543)
T 1nir_A          313 DNLTVTSIGAAPFLHDGGWDSS  334 (543)
T ss_dssp             SSCEEEEEECCSSCCCEEECTT
T ss_pred             CcceeEEeccCcCccCceECCC
Confidence            22 1  2223346778887744

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=97.25  E-value=0.0033  Score=62.71  Aligned_cols=136  Identities=10%  Similarity=0.083  Sum_probs=91.3

Q ss_pred             CceEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEECCC
Q 011333           84 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMN  163 (488)
Q Consensus        84 ~P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~N  163 (488)
                      .|.++++++++.++++....+.|+.++..+   +......... ...+         ......+++++++|.+|++....
T Consensus       124 ~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~---g~~~~~~~~~-~~~~---------~~~~v~~~~~~~~~~~~~s~~~d  190 (433)
T 3bws_A          124 QPKSVRFIDNTRLAIPLLEDEGMDVLDINS---GQTVRLSPPE-KYKK---------KLGFVETISIPEHNELWVSQMQA  190 (433)
T ss_dssp             CBCCCEESSSSEEEEEBTTSSSEEEEETTT---CCEEEECCCH-HHHT---------TCCEEEEEEEGGGTEEEEEEGGG
T ss_pred             CceEEEEeCCCeEEEEeCCCCeEEEEECCC---CeEeeecCcc-cccc---------cCCceeEEEEcCCCEEEEEECCC
Confidence            577899999888999988888999999875   2333222110 0011         12345679999999999999988


Q ss_pred             CEEEEEc-CC-C-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCceEE-eccC
Q 011333          164 MAIRKIS-DS-G-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCAY-QYGS  239 (488)
Q Consensus       164 ~rIrkid-~g-g-VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g~~~~~-~~~~  239 (488)
                      +.|+.++ +. . +.++.+.                 -..+.++++.+....||+++...+.|+.+++....+.. ....
T Consensus       191 ~~v~~~d~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~  253 (433)
T 3bws_A          191 NAVHVFDLKTLAYKATVDLT-----------------GKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI  253 (433)
T ss_dssp             TEEEEEETTTCCEEEEEECS-----------------SSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCC
T ss_pred             CEEEEEECCCceEEEEEcCC-----------------CCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCC
Confidence            9999999 33 3 3444321                 12567888665556788999888999999987554433 2223


Q ss_pred             CCcceEEEEe
Q 011333          240 SFPLGIAVLL  249 (488)
Q Consensus       240 g~P~GIav~~  249 (488)
                      +.|.++++..
T Consensus       254 ~~~~~~~~~~  263 (433)
T 3bws_A          254 GLPRGLLLSK  263 (433)
T ss_dssp             SEEEEEEECT
T ss_pred             CCceEEEEcC
Confidence            3455666653

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=97.10  E-value=0.0037  Score=65.56  Aligned_cols=110  Identities=14%  Similarity=0.066  Sum_probs=72.5

Q ss_pred             CC-cEEEEECCC----CeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCc-EEEEEC-----
Q 011333           93 GG-ELLILDSAN----SNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-IYIADT-----  161 (488)
Q Consensus        93 dG-~LYVaD~~n----~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~-LYVAD~-----  161 (488)
                      ++ .+||++...    +.|.+||..+.+  .+.++. .     |           ..| ||++++||. |||++.     
T Consensus        83 ~~~~vyV~n~~~~~~~~~VsVID~~t~~--vv~~I~-v-----G-----------~~P-gia~SpDgk~lyVan~~~~~~  142 (426)
T 3c75_H           83 DARRVYIQDPAHFAAITQQFVIDGSTGR--ILGMTD-G-----G-----------FLP-HPVAAEDGSFFAQASTVFERI  142 (426)
T ss_dssp             CTTEEEEEECTTTCSSEEEEEEETTTTE--EEEEEE-E-----C-----------SSC-EEEECTTSSCEEEEEEEEEET
T ss_pred             CCCEEEEECCCcCCCCCeEEEEECCCCE--EEEEEE-C-----C-----------CCC-ceEECCCCCEEEEEecccccc
Confidence            44 599999865    799999988532  122221 1     0           248 999999995 999986     


Q ss_pred             ----CCCEEEEEc--CCC-cEEEe-CCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECC-CCeEEEEEcCCCc
Q 011333          162 ----MNMAIRKIS--DSG-VTTIA-GGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRG-NRAIREIQLHFDD  232 (488)
Q Consensus       162 ----~N~rIrkid--~gg-VttIa-Gg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~g-N~rIrkI~~~g~~  232 (488)
                          ..+.|.+||  .+. +.+|. ++....           .....|.++++.++...|||++.. .+.|.+||.....
T Consensus       143 ~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~-----------~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~k  211 (426)
T 3c75_H          143 ARGKRTDYVEVFDPVTFLPIADIELPDAPRF-----------LVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKT  211 (426)
T ss_dssp             TEEEEEEEEEEECTTTCCEEEEEEETTCCCC-----------CBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTE
T ss_pred             ccCCCCCEEEEEECCCCcEEEEEECCCcccc-----------ccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCe
Confidence                356799999  333 34443 211000           012468999954444589999975 7899999988654


Q ss_pred             e
Q 011333          233 C  233 (488)
Q Consensus       233 ~  233 (488)
                      .
T Consensus       212 v  212 (426)
T 3c75_H          212 F  212 (426)
T ss_dssp             E
T ss_pred             E
Confidence            3

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.07  E-value=0.034  Score=57.01  Aligned_cols=161  Identities=14%  Similarity=0.153  Sum_probs=96.9

Q ss_pred             CCceeEEeecCCCCCCCceEEEEccC----C----cEEEEECC--CCeEEEE--eCCCCcccccEEEecCCCCccccCCC
Q 011333           68 SGYTVETVFDGSKLGIEPYSVEVLPG----G----ELLILDSA--NSNLYRI--SSSLSLYSRPKLVAGSAEGYSGHVDG  135 (488)
Q Consensus        68 dG~~~~~~~~G~~~l~~P~GIaVd~d----G----~LYVaD~~--n~rI~ki--d~~g~~~g~i~tvaG~~~G~~G~~dG  135 (488)
                      +|........|     .+++|.+-++    |    .+|++|..  +++|..|  ++..   +.+..+ +..       . 
T Consensus        58 ~G~~l~~~~~g-----~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~---~~l~~i-~~~-------~-  120 (355)
T 3amr_A           58 DGKMLHSYNTG-----KLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKN---GTLQSM-TDP-------D-  120 (355)
T ss_dssp             TSCEEEEECCS-----CEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTT---CCEEEC-SCT-------T-
T ss_pred             CCcEEEEccCC-----CcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCC---Cceeec-ccc-------c-
Confidence            45544443322     5677766542    2    36889988  8988888  5443   233322 210       0 


Q ss_pred             cccccccCCcceEEE--cCC-Cc--EEEEECCCCEEEEEc-----CCCc-----EEEeCCccCCCCCCCCCCcccccCCC
Q 011333          136 KPREARMNHPKGLTV--DDR-GN--IYIADTMNMAIRKIS-----DSGV-----TTIAGGKWGRGGGHVDGPSEDAKFSN  200 (488)
Q Consensus       136 ~a~~a~Ln~P~GIAv--D~d-G~--LYVAD~~N~rIrkid-----~ggV-----ttIaGg~~g~~~g~~dG~~~~a~f~~  200 (488)
                      .+....+..|.|||+  ++. |.  +||.+.. +++..+.     ++.+     .++.-+                  ..
T Consensus       121 ~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~-G~~~q~~l~~~~~g~~~~~lVR~f~lg------------------sq  181 (355)
T 3amr_A          121 HPIATAINEVYGFTLYHSQKTGKYYAMVTGKE-GEFEQYELKADKNGYISGKKVRAFKMN------------------SQ  181 (355)
T ss_dssp             SCEECCCSSCCCEEEEECTTTCCEEEEEECSS-SEEEEEEEEECTTSCEEEEEEEEEECS------------------SC
T ss_pred             cCcCCCCCCeeEEEEEecCCCCcEEEEEECCC-CeEEEEEEEeCCCCcccceEEEEecCC------------------CC
Confidence            001123688999999  774 53  8888865 6777644     2222     222211                  25


Q ss_pred             CCeeEEECCCCeEEEEECCCCeEEEEEcCCCc-----eE-EeccC---CCcceEEEEecCCceEEEEEEEEecc
Q 011333          201 DFDVVYIGSSCSLLVIDRGNRAIREIQLHFDD-----CA-YQYGS---SFPLGIAVLLAAGFFGYMLALLQRRV  265 (488)
Q Consensus       201 P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g~~-----~~-~~~~~---g~P~GIav~~g~g~~Gy~~a~l~~~~  265 (488)
                      |.++++.+..+.|||++...+ ||+|+.+...     .. .....   .-+.||++..+...-||.+++-|..-
T Consensus       182 ~EgcvvDd~~g~Lyv~eEd~G-Iw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~  254 (355)
T 3amr_A          182 TEGMAADDEYGRLYIAEEDEA-IWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNS  254 (355)
T ss_dssp             EEEEEEETTTTEEEEEETTTE-EEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGT
T ss_pred             cceEEEcCCCCeEEEecccce-EEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCC
Confidence            778886667899999998754 9999966321     11 11111   35789999866556789888877663

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=97.04  E-value=0.0048  Score=63.96  Aligned_cols=111  Identities=16%  Similarity=0.128  Sum_probs=72.8

Q ss_pred             ccCCc-EEEEECC----CCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCc-EEEEECC--
Q 011333           91 LPGGE-LLILDSA----NSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-IYIADTM--  162 (488)
Q Consensus        91 d~dG~-LYVaD~~----n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~-LYVAD~~--  162 (488)
                      .|+|. |||+|..    .++|.+||..+..  .+.++..      |           ..|. |++++||. +||+++.  
T Consensus        41 ~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~--v~~~I~v------G-----------~~P~-va~spDG~~lyVan~~~~  100 (386)
T 3sjl_D           41 APDARRVYVNDPAHFAAVTQQFVIDGEAGR--VIGMIDG------G-----------FLPN-PVVADDGSFIAHASTVFS  100 (386)
T ss_dssp             CCCTTEEEEEECGGGCSSEEEEEEETTTTE--EEEEEEE------C-----------SSCE-EEECTTSSCEEEEEEEEE
T ss_pred             CCCCCEEEEEcCcccCCCCEEEEEECCCCe--EEEEEEC------C-----------CCCc-EEECCCCCEEEEEccccc
Confidence            35664 9999986    6799999987532  1222211      1           1374 99999995 9999852  


Q ss_pred             -------CCEEEEEc--CCC-cEEEe-CC-ccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECC-CCeEEEEEcC
Q 011333          163 -------NMAIRKIS--DSG-VTTIA-GG-KWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRG-NRAIREIQLH  229 (488)
Q Consensus       163 -------N~rIrkid--~gg-VttIa-Gg-~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~g-N~rIrkI~~~  229 (488)
                             .+.|.+||  ... +.+|. +. +..            ..-..|.++++.++...|||++.. .+.|..||..
T Consensus       101 r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~------------~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~  168 (386)
T 3sjl_D          101 RIARGERTDYVEVFDPVTLLPTADIELPDAPRF------------LVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLE  168 (386)
T ss_dssp             ETTEEEEEEEEEEECTTTCCEEEEEEETTCCCC------------CBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETT
T ss_pred             ccccCCCCCEEEEEECCCCeEEEEEECCCcccc------------ccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECC
Confidence                   46799999  333 34442 21 100            012379999954445579999974 7899999988


Q ss_pred             CCce
Q 011333          230 FDDC  233 (488)
Q Consensus       230 g~~~  233 (488)
                      ....
T Consensus       169 t~~v  172 (386)
T 3sjl_D          169 GKAF  172 (386)
T ss_dssp             TTEE
T ss_pred             CCcE
Confidence            6543

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=97.02  E-value=0.012  Score=59.75  Aligned_cols=115  Identities=8%  Similarity=-0.069  Sum_probs=71.0

Q ss_pred             CCceEEEEccCCc-EEEEEC---------CCCeEEEEeCCCCcccccEEE-ecCCCCccccCCCcccccccCCcceEEEc
Q 011333           83 IEPYSVEVLPGGE-LLILDS---------ANSNLYRISSSLSLYSRPKLV-AGSAEGYSGHVDGKPREARMNHPKGLTVD  151 (488)
Q Consensus        83 ~~P~GIaVd~dG~-LYVaD~---------~n~rI~kid~~g~~~g~i~tv-aG~~~G~~G~~dG~a~~a~Ln~P~GIAvD  151 (488)
                      ..| +|++++||. |||++.         ..+.|.+||..+..  .+..+ ++..    +      .......|.+++++
T Consensus        67 ~~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~--~~~~i~~~~~----~------~~~~g~~p~~~~~s  133 (373)
T 2mad_H           67 FLP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFL--PIADIELPDA----P------RFDVGPYSWMNANT  133 (373)
T ss_pred             CCC-CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCc--EEEEEECCCc----c------ccccCCCccceEEC
Confidence            368 999999986 999984         24678899986421  11222 1100    0      00002469999999


Q ss_pred             CCCc-EEEEECC-CCEEEEEcCCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEc
Q 011333          152 DRGN-IYIADTM-NMAIRKISDSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQL  228 (488)
Q Consensus       152 ~dG~-LYVAD~~-N~rIrkid~ggVttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~  228 (488)
                      +||. |||+... .+.|..|| ..-..+.-                 .+..|.++.+.+....+|++.+..+++..|+.
T Consensus       134 pDG~~l~v~n~~~~~~v~viD-~t~~~~~~-----------------~i~~~~~~~~~~~~~~~~~~~~~dg~~~~vd~  194 (373)
T 2mad_H          134 PNNADLLFFQFAAGPAVGLVV-QGGSSDDQ-----------------LLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDH  194 (373)
T ss_pred             CCCCEEEEEecCCCCeEEEEE-CCCCEEeE-----------------EcCCCceEEEEeCCCceEEEEcCCCCEEEEEC
Confidence            9995 9999865 68899998 44222211                 01112233334555567788877888888877

>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}

Probab=97.02  E-value=0.0053  Score=67.04  Aligned_cols=122  Identities=18%  Similarity=0.186  Sum_probs=76.8

Q ss_pred             CCCCCceEEEEcc-CCcEEEEECCC---------------------CeEEEEeCCCCcc------cccEEEecCCCCccc
Q 011333           80 KLGIEPYSVEVLP-GGELLILDSAN---------------------SNLYRISSSLSLY------SRPKLVAGSAEGYSG  131 (488)
Q Consensus        80 ~~l~~P~GIaVd~-dG~LYVaD~~n---------------------~rI~kid~~g~~~------g~i~tvaG~~~G~~G  131 (488)
                      ..+..|.++++++ +|.|||+-+.+                     ++|+++.+++...      ..+.+++|.+....+
T Consensus       381 T~f~RpEgi~~~p~~g~vY~a~Tn~~~rg~~~~~~~~~np~~~n~~G~I~r~~~~~~d~~a~~f~w~~~v~~g~p~~~~~  460 (592)
T 3zwu_A          381 TRMDRPEWIVVSPKDGQVYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHASKTFAWDLFVVAGNPSVHAG  460 (592)
T ss_dssp             CCEECEEEEEECTTTCCEEEEECCBTTTTSTTCCCBTTBCCSSBSSCEEEEEEEGGGCTTCSEEEEEEEEECCCTTTSTT
T ss_pred             EEEeccceeEEcCCCCEEEEEecCCcccccCcccccccccccCCcceeEEEEecCCCccccceeEEEEEEeccCcccccc
Confidence            3466999999997 89999996643                     5799997653211      112334443211000


Q ss_pred             ----cCCCcccccccCCcceEEEcCCCcEEEEEC------------CCCEEEEEc--CCCcEEEeCCccCCCCCCCCCCc
Q 011333          132 ----HVDGKPREARMNHPKGLTVDDRGNIYIADT------------MNMAIRKIS--DSGVTTIAGGKWGRGGGHVDGPS  193 (488)
Q Consensus       132 ----~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~------------~N~rIrkid--~ggVttIaGg~~g~~~g~~dG~~  193 (488)
                          ..........|+.|-+|+||+.|+|||+.-            .|+.+..++  .+.+..++.++.+.         
T Consensus       461 ~~~~~~~~~~~~~~f~~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~ga---------  531 (592)
T 3zwu_A          461 TPKGGSSNITPQNMFNSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGC---------  531 (592)
T ss_dssp             SGGGCCTTCCTTTCCCCEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTC---------
T ss_pred             cccccccccCCCCCccCCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCc---------
Confidence                001112334699999999999999999854            356777777  45677777554321         


Q ss_pred             ccccCCCCCeeEEECCCCeEEEE
Q 011333          194 EDAKFSNDFDVVYIGSSCSLLVI  216 (488)
Q Consensus       194 ~~a~f~~P~gIa~vd~~G~LYVa  216 (488)
                            ...|+++.++...|||.
T Consensus       532 ------E~TG~~fspDg~tlfvn  548 (592)
T 3zwu_A          532 ------EVTGISFSPDQKTLFVG  548 (592)
T ss_dssp             ------EEEEEEECTTSSEEEEE
T ss_pred             ------cCcCeeECCCCCEEEEE
Confidence                  45788865555567774

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=96.99  E-value=0.014  Score=58.55  Aligned_cols=48  Identities=8%  Similarity=0.062  Sum_probs=33.6

Q ss_pred             CCeeEEECCCCeEEEEECCCCeEEEEEcCCC--ceEEe-cc-CCCcceEEEEec
Q 011333          201 DFDVVYIGSSCSLLVIDRGNRAIREIQLHFD--DCAYQ-YG-SSFPLGIAVLLA  250 (488)
Q Consensus       201 P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g~--~~~~~-~~-~g~P~GIav~~g  250 (488)
                      |++|++.++...||+++.  +.|..|+....  ..... .. ...|.+|++...
T Consensus       307 p~~ia~spdg~~l~v~n~--~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~  358 (361)
T 2oiz_A          307 ALSMTIDQQRNLMLTLDG--GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPV  358 (361)
T ss_dssp             CCEEEEETTTTEEEEECS--SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCC
T ss_pred             eeEEEECCCCCEEEEeCC--CeEEEEECCCCcceeeEEeccCCCCcEEEEecCC
Confidence            899996655557888885  89999998765  44332 22 346888887644

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=96.89  E-value=0.033  Score=52.71  Aligned_cols=127  Identities=10%  Similarity=0.001  Sum_probs=77.5

Q ss_pred             cEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCC-cEEEEECCCCEEEEEc--C
Q 011333           95 ELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRG-NIYIADTMNMAIRKIS--D  171 (488)
Q Consensus        95 ~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG-~LYVAD~~N~rIrkid--~  171 (488)
                      +++++....+.|+.++..++   ++......  +      +     ....|.+++++++| .+|+++...+.|..++  .
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~---~~~~~~~~--~------~-----~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~   65 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKM---AVDKVITI--A------D-----AGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVT   65 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTT---EEEEEEEC--T------T-----CTTCCCCEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred             cEEEEcCCCCeEEEEECCCC---cEEEEEEc--C------C-----CCCCccceEEcCCCCEEEEEeCCCCeEEEEECCC
Confidence            45666667778888887642   22221111  0      0     01138899999999 5899999889999999  3


Q ss_pred             CCc-EEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCC-eEEEEEC-----------CCCeEEEEEcCCCceEE-ec
Q 011333          172 SGV-TTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSC-SLLVIDR-----------GNRAIREIQLHFDDCAY-QY  237 (488)
Q Consensus       172 ggV-ttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G-~LYVaD~-----------gN~rIrkI~~~g~~~~~-~~  237 (488)
                      +.+ .++..+..+            ..-..|.+++ ++++| .||+++.           .++.|+.+++....... ..
T Consensus        66 ~~~~~~~~~~~~~------------~~~~~~~~~~-~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~  132 (337)
T 1pby_B           66 GETLGRIDLSTPE------------ERVKSLFGAA-LSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE  132 (337)
T ss_dssp             CCEEEEEECCBTT------------EEEECTTCEE-ECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEE
T ss_pred             CCeEeeEEcCCcc------------cccccccceE-ECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEe
Confidence            443 333321100            0012578898 55566 7999863           35899999987654432 22


Q ss_pred             cCCCcceEEEEec
Q 011333          238 GSSFPLGIAVLLA  250 (488)
Q Consensus       238 ~~g~P~GIav~~g  250 (488)
                      ....|.++++...
T Consensus       133 ~~~~~~~~~~s~d  145 (337)
T 1pby_B          133 APRQITMLAWARD  145 (337)
T ss_dssp             CCSSCCCEEECTT
T ss_pred             CCCCcceeEECCC
Confidence            3345777776543

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=96.87  E-value=0.006  Score=63.97  Aligned_cols=75  Identities=8%  Similarity=-0.071  Sum_probs=53.3

Q ss_pred             CCceEEEEccCCc-EEEEEC---------CCCeEEEEeCCCCcccccEEE-ecCCCCccccCCCcccccccCCcceEEEc
Q 011333           83 IEPYSVEVLPGGE-LLILDS---------ANSNLYRISSSLSLYSRPKLV-AGSAEGYSGHVDGKPREARMNHPKGLTVD  151 (488)
Q Consensus        83 ~~P~GIaVd~dG~-LYVaD~---------~n~rI~kid~~g~~~g~i~tv-aG~~~G~~G~~dG~a~~a~Ln~P~GIAvD  151 (488)
                      ..| +|++++||. |||++.         ..+.|.+||..+..  .+..+ ++....          ......|.+++++
T Consensus       119 ~~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~--vv~~I~v~g~~r----------~~~g~~P~~~~~s  185 (426)
T 3c75_H          119 FLP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFL--PIADIELPDAPR----------FLVGTYQWMNALT  185 (426)
T ss_dssp             SSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCC--EEEEEEETTCCC----------CCBSCCGGGSEEC
T ss_pred             CCC-ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCc--EEEEEECCCccc----------cccCCCcceEEEc
Confidence            479 999999987 999985         35679999987532  22222 221000          0012569999999


Q ss_pred             CCC-cEEEEECC-CCEEEEEc
Q 011333          152 DRG-NIYIADTM-NMAIRKIS  170 (488)
Q Consensus       152 ~dG-~LYVAD~~-N~rIrkid  170 (488)
                      +|| .|||++.. .+.|.+||
T Consensus       186 pDGk~lyV~n~~~~~~VsVID  206 (426)
T 3c75_H          186 PDNKNLLFYQFSPAPAVGVVD  206 (426)
T ss_dssp             TTSSEEEEEECSSSCEEEEEE
T ss_pred             CCCCEEEEEecCCCCeEEEEE
Confidence            999 59999875 78999999

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=96.83  E-value=0.0056  Score=65.38  Aligned_cols=107  Identities=7%  Similarity=-0.092  Sum_probs=76.2

Q ss_pred             EEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCc-EEEEECCCCEEE
Q 011333           89 EVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-IYIADTMNMAIR  167 (488)
Q Consensus        89 aVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~-LYVAD~~N~rIr  167 (488)
                      +++++|.+||+....+.|..+|..++.  .+.++...                . .|.+++++++|+ ||+++.. +.|+
T Consensus       144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~--~~~~i~~g----------------~-~~~~v~~spdg~~l~v~~~d-~~V~  203 (543)
T 1nir_A          144 DLDLPNLFSVTLRDAGQIALVDGDSKK--IVKVIDTG----------------Y-AVHISRMSASGRYLLVIGRD-ARID  203 (543)
T ss_dssp             CCCGGGEEEEEEGGGTEEEEEETTTCC--EEEEEECS----------------T-TEEEEEECTTSCEEEEEETT-SEEE
T ss_pred             ccCCCCEEEEEEcCCCeEEEEECCCce--EEEEEecC----------------c-ccceEEECCCCCEEEEECCC-CeEE
Confidence            367889999999999999999987532  22333211                1 278999999995 8999976 9999


Q ss_pred             EEcC--CCc---EEEeCCccCCCCCCCCCCcccccCCCCCeeEEEC----CCCeEEEEECCCCeEEEEEcCCCce
Q 011333          168 KISD--SGV---TTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIG----SSCSLLVIDRGNRAIREIQLHFDDC  233 (488)
Q Consensus       168 kid~--ggV---ttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd----~~G~LYVaD~gN~rIrkI~~~g~~~  233 (488)
                      .+|-  ...   .++..+                  ..|.+|++.+    +...|||++...+.|..++.....+
T Consensus       204 v~D~~~~t~~~~~~i~~g------------------~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~  260 (543)
T 1nir_A          204 MIDLWAKEPTKVAEIKIG------------------IEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEP  260 (543)
T ss_dssp             EEETTSSSCEEEEEEECC------------------SEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCE
T ss_pred             EEECcCCCCcEEEEEecC------------------CCcceEEeCCCcCCCCCEEEEEEccCCeEEEEecccccc
Confidence            9995  332   333221                  2588999543    4557999998888999998765433

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=96.76  E-value=0.12  Score=55.74  Aligned_cols=130  Identities=5%  Similarity=-0.091  Sum_probs=80.6

Q ss_pred             CCceEEEEccCCc-EEEEECCCCeEEEEeCC--CCcccccEEEecCCCCccccCCCcccccccCCcceEEEc----CCC-
Q 011333           83 IEPYSVEVLPGGE-LLILDSANSNLYRISSS--LSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVD----DRG-  154 (488)
Q Consensus        83 ~~P~GIaVd~dG~-LYVaD~~n~rI~kid~~--g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD----~dG-  154 (488)
                      ..|+++++++||. |||++. .+.|.+||..  +.  ..+..+.-                 -..|.+|+++    ++| 
T Consensus       197 ~~p~~v~~SpDGr~lyv~~~-dg~V~viD~~~~t~--~~v~~i~~-----------------G~~P~~ia~s~~~~pDGk  256 (567)
T 1qks_A          197 YAVHISRLSASGRYLFVIGR-DGKVNMIDLWMKEP--TTVAEIKI-----------------GSEARSIETSKMEGWEDK  256 (567)
T ss_dssp             SCEEEEEECTTSCEEEEEET-TSEEEEEETTSSSC--CEEEEEEC-----------------CSEEEEEEECCSTTCTTT
T ss_pred             CCccceEECCCCCEEEEEcC-CCeEEEEECCCCCC--cEeEEEec-----------------CCCCceeEEccccCCCCC
Confidence            4789999999987 888875 5699999984  21  12222211                 0248999999    588 


Q ss_pred             cEEEEECCCCEEEEEcC--CC-cEEEeCCccCCCC-----C--------CCC-----------CCcccc-----------
Q 011333          155 NIYIADTMNMAIRKISD--SG-VTTIAGGKWGRGG-----G--------HVD-----------GPSEDA-----------  196 (488)
Q Consensus       155 ~LYVAD~~N~rIrkid~--gg-VttIaGg~~g~~~-----g--------~~d-----------G~~~~a-----------  196 (488)
                      .+||++...+.|..||.  .. +.++.-+......     .        ..+           |...-.           
T Consensus       257 ~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~  336 (567)
T 1qks_A          257 YAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTT  336 (567)
T ss_dssp             EEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEE
T ss_pred             EEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceee
Confidence            59999999999999993  22 3444322110000     0        000           000000           


Q ss_pred             ---cCCCCCeeEEECCCC-eEEEEECCCCeEEEEEcCCCce
Q 011333          197 ---KFSNDFDVVYIGSSC-SLLVIDRGNRAIREIQLHFDDC  233 (488)
Q Consensus       197 ---~f~~P~gIa~vd~~G-~LYVaD~gN~rIrkI~~~g~~~  233 (488)
                         .=..|.++. ++++| .+||++...+.|.+|+......
T Consensus       337 ~i~~~~~~~d~~-~~pdgr~~~va~~~sn~V~ViD~~t~kl  376 (567)
T 1qks_A          337 EISAERFLHDGG-LDGSHRYFITAANARNKLVVIDTKEGKL  376 (567)
T ss_dssp             EEECCSSEEEEE-ECTTSCEEEEEEGGGTEEEEEETTTTEE
T ss_pred             eeeccccccCce-ECCCCCEEEEEeCCCCeEEEEECCCCcE
Confidence               002456777 45555 5889999999999999886543

>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*

Probab=96.73  E-value=0.0089  Score=65.01  Aligned_cols=121  Identities=17%  Similarity=0.191  Sum_probs=75.6

Q ss_pred             cccCCcceEEEcC-CCcEEEEECCC---------------------CEEEEEc-CCC----------cEEEeCCccCCCC
Q 011333          140 ARMNHPKGLTVDD-RGNIYIADTMN---------------------MAIRKIS-DSG----------VTTIAGGKWGRGG  186 (488)
Q Consensus       140 a~Ln~P~GIAvD~-dG~LYVAD~~N---------------------~rIrkid-~gg----------VttIaGg~~g~~~  186 (488)
                      ..|..|.+|++++ +|.||||=+.|                     .+|.++. +++          +..++|.......
T Consensus       381 T~mdRpEdi~v~p~~g~vY~alTnn~~rg~~~~~~~~~Npr~~n~~G~I~r~~e~~~d~~a~~f~W~i~l~~G~p~~~~~  460 (592)
T 4a9v_A          381 TRMDRPEWIVVSPKDGQVYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHASKTFAWDLFVVAGNPSVHAG  460 (592)
T ss_dssp             CCEECEEEEEECTTTCCEEEEECCBTTTTSTTSCCBTTBCCSSBSSCEEEEEEEGGGCTTCSEEEEEEEEECCCTTTSTT
T ss_pred             ccccCccceeEcCCCCEEEEEEeCCCCCCCcCccccCCCCccCCCCCeEEEEeeCCCCcccceeeEEEEEEccCCccccc
Confidence            4578999999998 78999996543                     5688886 221          2223332211000


Q ss_pred             C---CCCCCcccccCCCCCeeEEECCCCeEEE-EEC-----------CCCeEEEEEcCCCce-EEec--cCCCcceEEEE
Q 011333          187 G---HVDGPSEDAKFSNDFDVVYIGSSCSLLV-IDR-----------GNRAIREIQLHFDDC-AYQY--GSSFPLGIAVL  248 (488)
Q Consensus       187 g---~~dG~~~~a~f~~P~gIa~vd~~G~LYV-aD~-----------gN~rIrkI~~~g~~~-~~~~--~~g~P~GIav~  248 (488)
                      +   ...+......|++|.+|+ ++++|+||| +|.           +|+.|+++++..... ....  ....|+|+++.
T Consensus       461 ~~~~g~~~~~~~~~fnsPDnL~-fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafS  539 (592)
T 4a9v_A          461 TPKGGSSNITPQNMFNSPDGLG-FDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFS  539 (592)
T ss_dssp             SGGGCCTTCCTTTCCCCEEEEE-ECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEEC
T ss_pred             ccccCccCccccCccCCCCceE-ECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEEC
Confidence            0   001122345799999999 799999999 886           366899998854333 2222  23468899888


Q ss_pred             ecCCceEEEEEEEEec
Q 011333          249 LAAGFFGYMLALLQRR  264 (488)
Q Consensus       249 ~g~g~~Gy~~a~l~~~  264 (488)
                      ...   -+++...|++
T Consensus       540 PD~---ktLfV~vQHP  552 (592)
T 4a9v_A          540 PDQ---KTLFVGIQHP  552 (592)
T ss_dssp             TTS---SEEEEEEEST
T ss_pred             CCC---CEEEEEEeCC
Confidence            442   3456666665

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=96.66  E-value=0.011  Score=60.74  Aligned_cols=106  Identities=12%  Similarity=-0.085  Sum_probs=70.9

Q ss_pred             CcEEEEECCCC----eEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCC-cEEEEEC-------
Q 011333           94 GELLILDSANS----NLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRG-NIYIADT-------  161 (488)
Q Consensus        94 G~LYVaD~~n~----rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG-~LYVAD~-------  161 (488)
                      ..+||++...+    +|..||.++.+  .+.++.-.                 ..| +|++++|| .+||++.       
T Consensus        32 ~~~yV~~~~~~~~~d~vsvID~~t~~--v~~~i~vG-----------------~~P-~i~~spDg~~lyVan~~~~r~~~   91 (368)
T 1mda_H           32 RRSHITLPAYFAGTTENWVSCAGCGV--TLGHSLGA-----------------FLS-LAVAGHSGSDFALASTSFARSAK   91 (368)
T ss_dssp             TEEEEEECTTTCSSEEEEEEETTTTE--EEEEEEEC-----------------TTC-EEEECTTSSCEEEEEEEETTTTS
T ss_pred             CeEEEECCccCCccceEEEEECCCCe--EEEEEeCC-----------------CCC-ceEECCCCCEEEEEccccccccc
Confidence            57999998877    88999987532  22222211                 238 99999998 5999984       


Q ss_pred             --CCCEEEEEc--CCC-cEEEe-CCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECC-CCeEEE--EEcCC
Q 011333          162 --MNMAIRKIS--DSG-VTTIA-GGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRG-NRAIRE--IQLHF  230 (488)
Q Consensus       162 --~N~rIrkid--~gg-VttIa-Gg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~g-N~rIrk--I~~~g  230 (488)
                        ..+.|.+||  .+. +.+|. ++...           ......|.++++.++...|||++.+ .+.|..  ||+..
T Consensus        92 G~~~~~VsviD~~T~~vv~~I~v~~~~~-----------~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t  158 (368)
T 1mda_H           92 GKRTDYVEVFDPVTFLPIADIELPDAPR-----------FSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD  158 (368)
T ss_dssp             SSEEEEEEEECTTTCCEEEEEEETTSCS-----------CCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE
T ss_pred             CCCCCEEEEEECCCCCEEEEEECCCccc-----------cccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh
Confidence              358899999  344 45553 21110           0112479999954444589999975 677888  87654

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=96.64  E-value=0.0053  Score=67.05  Aligned_cols=116  Identities=11%  Similarity=0.094  Sum_probs=75.5

Q ss_pred             CCceEEEEccCCc-EEEEECCCCeEEEEeCCCCcc---ccc---EEEecCCCCccccCCCcccccccCCcceEEEcCCCc
Q 011333           83 IEPYSVEVLPGGE-LLILDSANSNLYRISSSLSLY---SRP---KLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN  155 (488)
Q Consensus        83 ~~P~GIaVd~dG~-LYVaD~~n~rI~kid~~g~~~---g~i---~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~  155 (488)
                      .+|+|+.++|||. +||++...++|.+|+......   +.+   ..+....  ..           =..|.++++|++|+
T Consensus       277 ~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v--~v-----------G~gP~h~aF~~dG~  343 (595)
T 1fwx_A          277 NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEP--EL-----------GLGPLHTAFDGRGN  343 (595)
T ss_dssp             SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECC--BC-----------CSCEEEEEECTTSE
T ss_pred             CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEc--CC-----------CCCcceEEECCCCe
Confidence            4899999999998 999999999999999873100   000   0011110  00           13599999999999


Q ss_pred             EEEEECCCCEEEEEc-CC-----------C-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCC-C
Q 011333          156 IYIADTMNMAIRKIS-DS-----------G-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGN-R  221 (488)
Q Consensus       156 LYVAD~~N~rIrkid-~g-----------g-VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN-~  221 (488)
                      +|++-...+.|.+++ +.           . +.++.-+       +..|     ..+...++++..+...||+++.+. +
T Consensus       344 aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~-------yqpG-----h~~~~~g~t~~~DGk~l~~~Nk~skd  411 (595)
T 1fwx_A          344 AYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVH-------YQPG-----HLKTVMGETLDATNDWLVCLSKFSKD  411 (595)
T ss_dssp             EEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECS-------SCEE-----EEEETTTTSTTCCSSEEEEEESCCTT
T ss_pred             EEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecc-------cccc-----cceeccceEeCCCCCEEEEcCCCCcc
Confidence            999999999999999 33           1 2333221       1111     123345666333344799999887 7


Q ss_pred             eE
Q 011333          222 AI  223 (488)
Q Consensus       222 rI  223 (488)
                      |+
T Consensus       412 r~  413 (595)
T 1fwx_A          412 RF  413 (595)
T ss_dssp             SS
T ss_pred             cc
Confidence            77

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=96.54  E-value=0.033  Score=56.55  Aligned_cols=110  Identities=12%  Similarity=0.031  Sum_probs=68.2

Q ss_pred             cCCc-EEEEEC-CCC---eEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCc-EEEEECC---
Q 011333           92 PGGE-LLILDS-ANS---NLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-IYIADTM---  162 (488)
Q Consensus        92 ~dG~-LYVaD~-~n~---rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~-LYVAD~~---  162 (488)
                      +++. +||+|. ..+   .|.+||..+.   ++...+-.     |           ..| +|++++||. |||++..   
T Consensus        30 ~~~~~~yv~~~~~~~~~~~v~v~D~~t~---~~~~~i~~-----g-----------~~p-~i~~spDg~~lyv~n~~~~~   89 (373)
T 2mad_H           30 ADGRRSYINLPAHHSAIIQQWVLDAGSG---SILGHVNG-----G-----------FLP-NPVAAHSGSEFALASTSFSR   89 (373)
T ss_pred             CCCCEEEEeCCcccCCccEEEEEECCCC---eEEEEecC-----C-----------CCC-CeEECCCCCEEEEEeccccc
Confidence            4444 999997 444   8899998752   22111111     1           147 999999995 9999853   


Q ss_pred             ------CCEEEEEcCCC---cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECC-CCeEEEEEcCCCc
Q 011333          163 ------NMAIRKISDSG---VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRG-NRAIREIQLHFDD  232 (488)
Q Consensus       163 ------N~rIrkid~gg---VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~g-N~rIrkI~~~g~~  232 (488)
                            .+.|.+||...   +.++.-+....          ......|.++++.++...|||++.. .+.|..|+ ....
T Consensus        90 ~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~----------~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~  158 (373)
T 2mad_H           90 IAKGKRTDYVEVFDPVTFLPIADIELPDAPR----------FDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGS  158 (373)
T ss_pred             cccCCCCCeEEEEECCCCcEEEEEECCCccc----------cccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCC
Confidence                  46788898433   23332110000          0001468899955555679999875 68999999 6543

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=96.53  E-value=0.064  Score=55.48  Aligned_cols=113  Identities=9%  Similarity=-0.043  Sum_probs=70.1

Q ss_pred             CCceEEEEccCCc-EEEEEC---------CCCeEEEEeCCCCcccccEEE-ecCCCCccccCCCcccccccCCcceEEEc
Q 011333           83 IEPYSVEVLPGGE-LLILDS---------ANSNLYRISSSLSLYSRPKLV-AGSAEGYSGHVDGKPREARMNHPKGLTVD  151 (488)
Q Consensus        83 ~~P~GIaVd~dG~-LYVaD~---------~n~rI~kid~~g~~~g~i~tv-aG~~~G~~G~~dG~a~~a~Ln~P~GIAvD  151 (488)
                      ..|+ |++++||. |||++.         ..+.|.+||..+..  .+..+ ++.  |...        ..-..|.+++++
T Consensus        79 ~~P~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~--v~~~I~v~~--g~r~--------~~g~~P~~~a~s  145 (386)
T 3sjl_D           79 FLPN-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLL--PTADIELPD--APRF--------LVGTYPWMTSLT  145 (386)
T ss_dssp             SSCE-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCC--EEEEEEETT--CCCC--------CBSCCGGGEEEC
T ss_pred             CCCc-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCe--EEEEEECCC--cccc--------ccCCCCceEEEc
Confidence            3685 99999987 999984         24579999988632  12222 221  0000        012479999999


Q ss_pred             CCCc-EEEEECC-CCEEEEEc--CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCe----eEEECCCCeEEEEECCC-C
Q 011333          152 DRGN-IYIADTM-NMAIRKIS--DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFD----VVYIGSSCSLLVIDRGN-R  221 (488)
Q Consensus       152 ~dG~-LYVAD~~-N~rIrkid--~gg-VttIaGg~~g~~~g~~dG~~~~a~f~~P~g----Ia~vd~~G~LYVaD~gN-~  221 (488)
                      +||. |||++.. .+.|..||  .+. +.+|.-..    +          ....|.+    ++ +..+|.+++.|.+. +
T Consensus       146 pDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g----~----------~~~~P~g~~~~~~-~~~DG~~~~v~~~~~g  210 (386)
T 3sjl_D          146 PDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD----C----------YHIFPTAPDTFFM-HCRDGSLAKVAFGTEG  210 (386)
T ss_dssp             TTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS----E----------EEEEEEETTEEEE-EETTSCEEEEECCSSS
T ss_pred             CCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC----c----------ceeecCCCceeEE-ECCCCCEEEEECCCCC
Confidence            9995 9999974 78999999  344 45553210    0          0112433    24 55677777777764 5


Q ss_pred             eE
Q 011333          222 AI  223 (488)
Q Consensus       222 rI  223 (488)
                      +|
T Consensus       211 ~v  212 (386)
T 3sjl_D          211 TP  212 (386)
T ss_dssp             CC
T ss_pred             eE
Confidence            55

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=96.51  E-value=0.0073  Score=61.93  Aligned_cols=114  Identities=6%  Similarity=-0.103  Sum_probs=71.8

Q ss_pred             CCceEEEEccCCc-EEEEEC---------CCCeEEEEeCCCCcccccEEE-ecCCCCccccCCCcccccccCCcceEEEc
Q 011333           83 IEPYSVEVLPGGE-LLILDS---------ANSNLYRISSSLSLYSRPKLV-AGSAEGYSGHVDGKPREARMNHPKGLTVD  151 (488)
Q Consensus        83 ~~P~GIaVd~dG~-LYVaD~---------~n~rI~kid~~g~~~g~i~tv-aG~~~G~~G~~dG~a~~a~Ln~P~GIAvD  151 (488)
                      ..| ++++++||. |||++.         ..+.|.+||..+.+  .+.++ +|....          ......|.+|+++
T Consensus        66 ~~P-~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~--vv~~I~v~~~~~----------~~~g~~P~~ia~S  132 (368)
T 1mda_H           66 FLS-LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFL--PIADIELPDAPR----------FSVGPRVHIIGNC  132 (368)
T ss_dssp             TTC-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCC--EEEEEEETTSCS----------CCBSCCTTSEEEC
T ss_pred             CCC-ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCC--EEEEEECCCccc----------cccCCCcceEEEc
Confidence            368 999999886 999984         35789999998643  23333 221000          0113579999999


Q ss_pred             CCC-cEEEEECC-CCEEEE--EcCCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEE
Q 011333          152 DRG-NIYIADTM-NMAIRK--ISDSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQ  227 (488)
Q Consensus       152 ~dG-~LYVAD~~-N~rIrk--id~ggVttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~  227 (488)
                      +|| .+||++.. ++.|..  ||...+.++.-+.    +               ..+  .+....+|++.+.++++..++
T Consensus       133 pDGk~lyVan~~~~~~v~V~~iD~~tv~~i~v~~----~---------------~~~--~p~g~~~~~~~~~dg~~~~vd  191 (368)
T 1mda_H          133 ASSACLLFFLFGSSAAAGLSVPGASDDQLTKSAS----C---------------FHI--HPGAAATHYLGSCPASLAASD  191 (368)
T ss_dssp             TTSSCEEEEECSSSCEEEEEETTTEEEEEEECSS----C---------------CCC--EEEETTEEECCCCTTSCEEEE
T ss_pred             CCCCEEEEEccCCCCeEEEEEEchhhceEEECCC----c---------------eEE--ccCCCeEEEEEcCCCCEEEEE
Confidence            999 59999875 678888  8833355553210    0               111  233345666666667776676


Q ss_pred             cCC
Q 011333          228 LHF  230 (488)
Q Consensus       228 ~~g  230 (488)
                      ...
T Consensus       192 ~~~  194 (368)
T 1mda_H          192 LAA  194 (368)
T ss_dssp             CCS
T ss_pred             Ccc
Confidence            653

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=96.50  E-value=0.075  Score=54.95  Aligned_cols=155  Identities=12%  Similarity=0.083  Sum_probs=95.1

Q ss_pred             CceEEEEc-c-------CCcEEEEECCCCeEEEEeCCCCcccccEEEecC-CCCcc-c--cCCCcccccccCCcceEEEc
Q 011333           84 EPYSVEVL-P-------GGELLILDSANSNLYRISSSLSLYSRPKLVAGS-AEGYS-G--HVDGKPREARMNHPKGLTVD  151 (488)
Q Consensus        84 ~P~GIaVd-~-------dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~-~~G~~-G--~~dG~a~~a~Ln~P~GIAvD  151 (488)
                      .-..|+|| .       ++.+||+|.+...|.++|...+.   ...+... ..-.. +  ..+|.... ....-.|||++
T Consensus       153 ~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~---swRv~~~~~~pd~~~~~~i~G~~~~-~~~Gi~gIaLs  228 (381)
T 3q6k_A          153 YFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQD---SWNVTHPTFKAERPTKFDYGGKEYE-FKAGIFGITLG  228 (381)
T ss_dssp             GEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTE---EEEEECGGGSCCSCEEEEETTEEEE-ECCCEEEEEEC
T ss_pred             ccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCc---EEEEccCCCccccCcceEECCEEeE-eccCceEEEec
Confidence            45688998 2       45699999999999999988643   2223321 10000 0  01221110 01366799999


Q ss_pred             CC----C-cEEEEECCCCEEEEEc-----CCC----cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEEC-CCCeEEEE
Q 011333          152 DR----G-NIYIADTMNMAIRKIS-----DSG----VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIG-SSCSLLVI  216 (488)
Q Consensus       152 ~d----G-~LYVAD~~N~rIrkid-----~gg----VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd-~~G~LYVa  216 (488)
                      ++    + .||+.--.+.++..+.     +..    |..+ |.. +        +     .....+++ .| .+|+||++
T Consensus       229 p~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~-G~k-g--------~-----~s~~~~~~-~D~~~G~ly~~  292 (381)
T 3q6k_A          229 DRDSEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPELL-GNR-G--------K-----YNDAIALA-YDPKTKVIFFA  292 (381)
T ss_dssp             CCCTTSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCCEEE-EEC-C--------T-----TCCEEEEE-ECTTTCEEEEE
T ss_pred             CCcCCCCeEEEEEECCCCcEEEEEHHHhhCcchhhceEEe-eec-C--------C-----CCCcceEE-EeCCCCeEEEE
Confidence            86    3 5999999888999887     221    2222 111 0        0     01123455 55 89999999


Q ss_pred             ECCCCeEEEEEcCC-Cc-------eEEeccCCCcceEEEEecCCceEEEEEEEE
Q 011333          217 DRGNRAIREIQLHF-DD-------CAYQYGSSFPLGIAVLLAAGFFGYMLALLQ  262 (488)
Q Consensus       217 D~gN~rIrkI~~~g-~~-------~~~~~~~g~P~GIav~~g~g~~Gy~~a~l~  262 (488)
                      +..++.|.+++.++ .-       ........+|++++++.    -|+++.+..
T Consensus       293 ~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~----~g~Lwv~sn  342 (381)
T 3q6k_A          293 EANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDS----KGGLWFMSN  342 (381)
T ss_dssp             ESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECT----TSCEEEEEC
T ss_pred             eccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECC----CCeEEEEEC
Confidence            99999999999987 21       22234556899999873    345655543

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=96.23  E-value=0.078  Score=56.19  Aligned_cols=31  Identities=13%  Similarity=-0.006  Sum_probs=26.2

Q ss_pred             CCCCeeEEECCCCeEEEEECCCCeEEEEEcC
Q 011333          199 SNDFDVVYIGSSCSLLVIDRGNRAIREIQLH  229 (488)
Q Consensus       199 ~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~  229 (488)
                      ..|.+|.+..+...|||++++.+.|..++..
T Consensus       321 ~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~  351 (462)
T 2ece_A          321 PLVTDIDISLDDKFLYLSLWGIGEVRQYDIS  351 (462)
T ss_dssp             CCCCCEEECTTSCEEEEEETTTTEEEEEECS
T ss_pred             CceeEEEECCCCCEEEEEeCCCCEEEEEEec
Confidence            4689999655556799999999999999975

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=96.20  E-value=0.027  Score=60.83  Aligned_cols=103  Identities=10%  Similarity=-0.073  Sum_probs=72.4

Q ss_pred             EccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCc-EEEEECCCCEEEE
Q 011333           90 VLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-IYIADTMNMAIRK  168 (488)
Q Consensus        90 Vd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~-LYVAD~~N~rIrk  168 (488)
                      .|+.+.+||++...+.|..||..+.   ++...+..                -..|.++++++||+ +||++. .+.|.+
T Consensus       163 ~d~~~~~~V~~~~~~~V~viD~~t~---~v~~~i~~----------------g~~p~~v~~SpDGr~lyv~~~-dg~V~v  222 (567)
T 1qks_A          163 WDLENLFSVTLRDAGQIALIDGSTY---EIKTVLDT----------------GYAVHISRLSASGRYLFVIGR-DGKVNM  222 (567)
T ss_dssp             CCGGGEEEEEETTTTEEEEEETTTC---CEEEEEEC----------------SSCEEEEEECTTSCEEEEEET-TSEEEE
T ss_pred             cCCCceEEEEeCCCCeEEEEECCCC---eEEEEEeC----------------CCCccceEECCCCCEEEEEcC-CCeEEE
Confidence            4556779999999999999998863   22222221                12478999999996 899985 568999


Q ss_pred             EcCC--C---cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEEC----CCCeEEEEECCCCeEEEEEcCC
Q 011333          169 ISDS--G---VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIG----SSCSLLVIDRGNRAIREIQLHF  230 (488)
Q Consensus       169 id~g--g---VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd----~~G~LYVaD~gN~rIrkI~~~g  230 (488)
                      ||..  .   +.++..+                  ..|.+|++..    +...|||++...+.|..|+...
T Consensus       223 iD~~~~t~~~v~~i~~G------------------~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t  275 (567)
T 1qks_A          223 IDLWMKEPTTVAEIKIG------------------SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGET  275 (567)
T ss_dssp             EETTSSSCCEEEEEECC------------------SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTT
T ss_pred             EECCCCCCcEeEEEecC------------------CCCceeEEccccCCCCCEEEEEEccCCeEEEEECCC
Confidence            9942  3   3333321                  1588999541    3448999999999999998654

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=96.19  E-value=0.082  Score=56.02  Aligned_cols=142  Identities=10%  Similarity=0.018  Sum_probs=77.0

Q ss_pred             CceEEEE--ccCCc-EEEEEC-----CCCeEEEEeCCCCcccccEEE-ecCCCCccccCC-C-cccccccCCcceEEEcC
Q 011333           84 EPYSVEV--LPGGE-LLILDS-----ANSNLYRISSSLSLYSRPKLV-AGSAEGYSGHVD-G-KPREARMNHPKGLTVDD  152 (488)
Q Consensus        84 ~P~GIaV--d~dG~-LYVaD~-----~n~rI~kid~~g~~~g~i~tv-aG~~~G~~G~~d-G-~a~~a~Ln~P~GIAvD~  152 (488)
                      .|.+|.+  +++|. +||+..     .++.|.++..+.+......++ +... ...+... - ....+.-+.|.+|.+++
T Consensus       252 ~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~-~v~~~lp~~~~~f~~~~~~pa~I~lS~  330 (462)
T 2ece_A          252 MALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAE-PLEGNLPEILKPFKAVPPLVTDIDISL  330 (462)
T ss_dssp             EEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCE-ECCSSCCGGGGGGTEECCCCCCEEECT
T ss_pred             ccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCc-cccccccccccccccCCCceeEEEECC
Confidence            5778877  88886 888887     778887766553221111111 0110 0000000 0 00000025699999999


Q ss_pred             CCc-EEEEECCCCEEEEEc-C-C-CcE---EEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEE--------
Q 011333          153 RGN-IYIADTMNMAIRKIS-D-S-GVT---TIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVID--------  217 (488)
Q Consensus       153 dG~-LYVAD~~N~rIrkid-~-g-gVt---tIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD--------  217 (488)
                      ||+ |||++++.+.|..|+ . . ..+   .+.-++.........|.   ..-..|.++++..+...|||++        
T Consensus       331 DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~---~~~ggPr~~~lSpDGk~LyVaNsl~~~wd~  407 (462)
T 2ece_A          331 DDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGH---KLTGAPQMLEISRDGRRVYVTNSLYSTWDN  407 (462)
T ss_dssp             TSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSC---CCCSCCCCEEECTTSSEEEEECCCCHHHHH
T ss_pred             CCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccc---cCCCCCCEEEEcCCCCEEEEEcCCcccccc
Confidence            995 999999999999998 2 2 222   22211100000000010   0123699999544455799999        


Q ss_pred             C-----CCCeEEEEEcC
Q 011333          218 R-----GNRAIREIQLH  229 (488)
Q Consensus       218 ~-----gN~rIrkI~~~  229 (488)
                      .     .+..+.+++.+
T Consensus       408 Qfyp~~~~~~~~~~~vd  424 (462)
T 2ece_A          408 QFYPEGLKGWMVKLNAN  424 (462)
T ss_dssp             HHSTTCCCCEEEEEEEC
T ss_pred             cccCCCCceEEEEEEec
Confidence            3     45677766555

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=96.14  E-value=0.037  Score=57.25  Aligned_cols=105  Identities=14%  Similarity=0.243  Sum_probs=72.4

Q ss_pred             CCceEEEEccC----C-cEEEEECCCCeEEEEeCC----CCcccccEEEecCCCCccccCCCcccccccCCcceEEEc-C
Q 011333           83 IEPYSVEVLPG----G-ELLILDSANSNLYRISSS----LSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVD-D  152 (488)
Q Consensus        83 ~~P~GIaVd~d----G-~LYVaD~~n~rI~kid~~----g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD-~  152 (488)
                      ..-.||+++++    + .||++-..+.+++++...    ......+.. .|.    .|.         .....++++| .
T Consensus       220 ~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~-~G~----kg~---------~s~~~~~~~D~~  285 (381)
T 3q6k_A          220 AGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPEL-LGN----RGK---------YNDAIALAYDPK  285 (381)
T ss_dssp             CCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCCEE-EEE----CCT---------TCCEEEEEECTT
T ss_pred             cCceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHHhhCcchhhceEE-eee----cCC---------CCCcceEEEeCC
Confidence            35679999886    3 499999888899999632    111112222 221    110         1223468897 7


Q ss_pred             CCcEEEEECCCCEEEEEc-CC------CcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEE
Q 011333          153 RGNIYIADTMNMAIRKIS-DS------GVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVID  217 (488)
Q Consensus       153 dG~LYVAD~~N~rIrkid-~g------gVttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD  217 (488)
                      +|+||+++..++.|.+++ ++      .+.+++-.               ..|.+|.++. ++.+|.|||.-
T Consensus       286 ~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d---------------~~l~~pd~~~-i~~~g~Lwv~s  341 (381)
T 3q6k_A          286 TKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTS---------------SRFVFGTDIS-VDSKGGLWFMS  341 (381)
T ss_dssp             TCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEEC---------------TTCCSEEEEE-ECTTSCEEEEE
T ss_pred             CCeEEEEeccCCeEEEEeCCCCccccCceEEEEEC---------------CCccccCeEE-ECCCCeEEEEE
Confidence            999999999999999999 43      24555532               2588999999 78999999986

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=96.13  E-value=0.036  Score=60.55  Aligned_cols=72  Identities=8%  Similarity=0.134  Sum_probs=56.3

Q ss_pred             CCcceEEEcCCCc-EEEEECCCCEEEEEcCCCcE------------EEeCCccCCCCCCCCCCcccccCCCCCeeEEECC
Q 011333          143 NHPKGLTVDDRGN-IYIADTMNMAIRKISDSGVT------------TIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGS  209 (488)
Q Consensus       143 n~P~GIAvD~dG~-LYVAD~~N~rIrkid~ggVt------------tIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~  209 (488)
                      +.|.||.+++||. +||++...++|.+|+-....            .++--..|               ..|.+++ ++.
T Consensus       277 ~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG---------------~gP~h~a-F~~  340 (595)
T 1fwx_A          277 NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELG---------------LGPLHTA-FDG  340 (595)
T ss_dssp             SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCC---------------SCEEEEE-ECT
T ss_pred             CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCC---------------CCcceEE-ECC
Confidence            6899999999996 99999999999999933221            11111111               3799999 688


Q ss_pred             CCeEEEEECCCCeEEEEEcCC
Q 011333          210 SCSLLVIDRGNRAIREIQLHF  230 (488)
Q Consensus       210 ~G~LYVaD~gN~rIrkI~~~g  230 (488)
                      +|++|++..-.+.|.+++.+.
T Consensus       341 dG~aY~t~~ldsqV~kwdi~~  361 (595)
T 1fwx_A          341 RGNAYTSLFLDSQVVKWNIED  361 (595)
T ss_dssp             TSEEEEEETTTTEEEEEEHHH
T ss_pred             CCeEEEEEecCCcEEEEEhhH
Confidence            889999999999999999764

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=95.98  E-value=0.048  Score=54.57  Aligned_cols=109  Identities=12%  Similarity=0.054  Sum_probs=68.3

Q ss_pred             CcEEEEECC-----CCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCc-EEEEEC------
Q 011333           94 GELLILDSA-----NSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-IYIADT------  161 (488)
Q Consensus        94 G~LYVaD~~-----n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~-LYVAD~------  161 (488)
                      ..+||+|.+     .+.|+++|...+.  .+.++...                 ..| +|+++++|. |||++.      
T Consensus        16 ~~~yv~~~~~~~~~d~~v~v~D~~t~~--~~~~i~~g-----------------~~p-~i~~spdg~~lyv~~~~~~~~~   75 (361)
T 2oiz_A           16 NRIYVMDSVFMHLTESRVHVYDYTNGK--FLGMVPTA-----------------FNG-HVQVSNDGKKIYTMTTYHERIT   75 (361)
T ss_dssp             GEEEEEECCGGGGGGCEEEEEETTTCC--EEEEEECC-----------------EEE-EEEECTTSSEEEEEEEEETTSS
T ss_pred             CEEEEECCCCCccccCeEEEEECCCCe--EEEEecCC-----------------CCC-ceEECCCCCEEEEEEecccccc
Confidence            359999864     3589999976522  12222110                 137 999999995 999974      


Q ss_pred             ---CCCEEEEEcC--CC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECC-CCeEEEEEcCCCce
Q 011333          162 ---MNMAIRKISD--SG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRG-NRAIREIQLHFDDC  233 (488)
Q Consensus       162 ---~N~rIrkid~--gg-VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~g-N~rIrkI~~~g~~~  233 (488)
                         ..+.|..||.  .. +.++......           ...-..|.+|++.++...|||++.+ .+.|..|+......
T Consensus        76 ~g~~~~~v~v~d~~t~~~~~~i~~~~~~-----------~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~  143 (361)
T 2oiz_A           76 RGKRSDVVEVWDADKLTFEKEISLPPKR-----------VQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDY  143 (361)
T ss_dssp             SSCEEEEEEEEETTTCCEEEEEEECTTB-----------CCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEE
T ss_pred             cCCCCCEEEEEECcCCcEEEEEEcCccc-----------cccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcE
Confidence               2356999983  23 3444321100           0012479999954444479999976 68999999876543

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=95.91  E-value=0.029  Score=55.79  Aligned_cols=107  Identities=12%  Similarity=0.114  Sum_probs=69.8

Q ss_pred             EEEEccC-CcEEEEE---CCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCC-CcEEEEEC
Q 011333           87 SVEVLPG-GELLILD---SANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDR-GNIYIADT  161 (488)
Q Consensus        87 GIaVd~d-G~LYVaD---~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~d-G~LYVAD~  161 (488)
                      +.++.++ +.||++|   .++..|++++.+|.   ....+....               .     ++++.+ +.||++|.
T Consensus       108 ~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs---~~~~lt~~~---------------~-----~~~~~~g~~iy~t~~  164 (302)
T 3s25_A          108 CIYASLIGNYIYYLHYDTQTATSLYRIRIDGE---EKKKIKNHY---------------L-----FTCNTSDRYFYYNNP  164 (302)
T ss_dssp             EEEEEEETTEEEEEEESSSSCEEEEEEETTSC---CCEEEESSC---------------C-----CCSEEETTEEEEECT
T ss_pred             ccEEEEeCCEEEEEeecCCCCceEEEEECCCC---CeEEEeCCC---------------c-----eEeeEECCEEEEEeC
Confidence            3455554 4599999   67889999999973   334443320               0     123343 47999998


Q ss_pred             CCCEEEEEc-CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCC-CeEEEEEcCCCceEEe
Q 011333          162 MNMAIRKIS-DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGN-RAIREIQLHFDDCAYQ  236 (488)
Q Consensus       162 ~N~rIrkid-~gg-VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN-~rIrkI~~~g~~~~~~  236 (488)
                      +..+|.+++ +|+ ..++..+                    +..+++++..+.||.+|... .+|.+++++|......
T Consensus       165 g~~~Iy~~~l~g~~~~~l~~~--------------------~~~~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~~~L  222 (302)
T 3s25_A          165 KNGQLYRYDTASQSEALFYDC--------------------NCYKPVVLDDTNVYYMDVNRDNAIVHVNINNPNPVVL  222 (302)
T ss_dssp             TTCCEEEEETTTTEEEEEECS--------------------CEEEEEEEETTEEEEEEGGGTTEEEEECSSSCCCEEC
T ss_pred             CCceEEEEECCCCCEEEEeCC--------------------CccceeeecCCEEEEEEcCCCcEEEEEECCCCCeEEE
Confidence            889999998 555 4444321                    11123345688999999754 6899999998665543

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=95.89  E-value=0.098  Score=55.22  Aligned_cols=75  Identities=11%  Similarity=0.013  Sum_probs=46.7

Q ss_pred             CCcceEEEcC-------CCcEEEEECCCCEEEEEc--CCC-c---EEEeCCccCCCCCCCCCCcccccCCCCCeeEEECC
Q 011333          143 NHPKGLTVDD-------RGNIYIADTMNMAIRKIS--DSG-V---TTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGS  209 (488)
Q Consensus       143 n~P~GIAvD~-------dG~LYVAD~~N~rIrkid--~gg-V---ttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~  209 (488)
                      ..|.|++|-.       .|.++|+|.. .+|.++.  .++ +   ..+..+....        ........|.+|+ +++
T Consensus       276 ~Ap~G~~~Y~G~~fP~~~g~~f~~~~~-g~i~~~~~~~~~~~~~~~~~~~g~~~~--------~~~~~~~r~~~v~-~~p  345 (463)
T 2wg3_C          276 GPLVGGFVYRGCQSERLYGSYVFGDRN-GNFLTLQQSPVTKQWQEKPLCLGTSGS--------CRGYFSGHILGFG-EDE  345 (463)
T ss_dssp             -CEEEEEECCCSSCTTTTTCEEEEETT-SCEEEEEC-----CCEEEEECEEETTS--------SCSCCCSEEEEEE-ECT
T ss_pred             ccccceEEEeCCCChhhcceEEEecCC-CcEEEEEeCCCCceeeEEEeecCCccc--------ccccccCcceEEE-ECC
Confidence            3678888852       4569999986 6788776  222 1   1221110000        0011234689999 899


Q ss_pred             CCeEEEEEC-------CCCeEEEEE
Q 011333          210 SCSLLVIDR-------GNRAIREIQ  227 (488)
Q Consensus       210 ~G~LYVaD~-------gN~rIrkI~  227 (488)
                      +|.|||+|.       .+++|+||.
T Consensus       346 dG~Lyv~~~~~~~~~~~~G~I~Ri~  370 (463)
T 2wg3_C          346 LGEVYILSSSKSMTQTHNGKLYKIV  370 (463)
T ss_dssp             TCCEEEEEESSCGGGCSSEEEEEEE
T ss_pred             CCCEEEEeccCCcccCCCCcEEEec
Confidence            999999997       578999997

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=95.89  E-value=0.084  Score=50.27  Aligned_cols=69  Identities=14%  Similarity=0.185  Sum_probs=45.4

Q ss_pred             CcceEEEcCCCcEEEEECCCCEEEEEcC-CCc-EEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCC
Q 011333          144 HPKGLTVDDRGNIYIADTMNMAIRKISD-SGV-TTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNR  221 (488)
Q Consensus       144 ~P~GIAvD~dG~LYVAD~~N~rIrkid~-ggV-ttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~  221 (488)
                      ....+++|++|+|||+.. ++.|.+++. +.. ..+....                 ..+..++ ++.+|+|||+.. ++
T Consensus       216 ~~~~~~~~~~g~l~v~t~-~~gl~~~~~~g~~~~~~~~~~-----------------~~~~~~~-~~~~g~l~v~t~-~g  275 (330)
T 3hxj_A          216 TVTRPAISEDGTIYVTSL-DGHLYAINPDGTEKWRFKTGK-----------------RIESSPV-IGNTDTIYFGSY-DG  275 (330)
T ss_dssp             CCSCCEECTTSCEEEEET-TTEEEEECTTSCEEEEEECSS-----------------CCCSCCE-ECTTSCEEEECT-TC
T ss_pred             ceeceEECCCCeEEEEcC-CCeEEEECCCCCEeEEeeCCC-----------------Cccccce-EcCCCeEEEecC-CC
Confidence            356789999999999975 567888883 443 2222110                 0123455 677899999864 46


Q ss_pred             eEEEEEcCCCc
Q 011333          222 AIREIQLHFDD  232 (488)
Q Consensus       222 rIrkI~~~g~~  232 (488)
                      .|.+++..+..
T Consensus       276 gl~~~d~~g~~  286 (330)
T 3hxj_A          276 HLYAINPDGTE  286 (330)
T ss_dssp             EEEEECTTSCE
T ss_pred             CEEEECCCCcE
Confidence            89999876543

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=95.49  E-value=0.26  Score=50.87  Aligned_cols=112  Identities=9%  Similarity=0.131  Sum_probs=74.6

Q ss_pred             ceEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEECCCC
Q 011333           85 PYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNM  164 (488)
Q Consensus        85 P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~N~  164 (488)
                      ..++++.+|+.++++-..++.|+.++.++   ..+..+.+.                -.....|+++++|.++++=....
T Consensus       429 v~~~~~s~d~~~l~~~~~d~~v~~w~~~~---~~~~~~~~~----------------~~~v~~~~~spd~~~las~~~d~  489 (577)
T 2ymu_A          429 VWGVAFSPDDQTIASASDDKTVKLWNRNG---QLLQTLTGH----------------SSSVRGVAFSPDGQTIASASDDK  489 (577)
T ss_dssp             EEEEEECTTSSEEEEEETTSEEEEEETTS---CEEEEEECC----------------SSCEEEEEECTTSCEEEEEETTS
T ss_pred             eEEEEECCCCCEEEEEcCCCEEEEEECCC---CEEEEEcCC----------------CCCEEEEEEcCCCCEEEEEeCCC
Confidence            46788888888777766777888888765   233344332                12356799999999888766788


Q ss_pred             EEEEEc-CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCce
Q 011333          165 AIRKIS-DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDC  233 (488)
Q Consensus       165 rIrkid-~gg-VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g~~~  233 (488)
                      .|+.++ ++. +.++.+..                 ....+|+ +.++|.++++-...+.|+.++..+...
T Consensus       490 ~i~iw~~~~~~~~~~~~h~-----------------~~v~~l~-~s~dg~~l~s~~~dg~v~lwd~~~~~~  542 (577)
T 2ymu_A          490 TVKLWNRNGQLLQTLTGHS-----------------SSVRGVA-FSPDGQTIASASDDKTVKLWNRNGQLL  542 (577)
T ss_dssp             EEEEEETTSCEEEEEECCS-----------------SCEEEEE-ECTTSSCEEEEETTSEEEEECTTSCEE
T ss_pred             EEEEEcCCCCEEEEEeCCC-----------------CCEEEEE-EcCCCCEEEEEECcCEEEEEeCCCCEE
Confidence            899998 554 44444321                 1345777 466677666666677888888765433

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=95.39  E-value=0.58  Score=48.21  Aligned_cols=109  Identities=10%  Similarity=0.139  Sum_probs=71.2

Q ss_pred             ceEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEECCCC
Q 011333           85 PYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNM  164 (488)
Q Consensus        85 P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~N~  164 (488)
                      -..|+++|||.++++-..++.|+.++.++   ..+.++.|..                ..-..|++.++|++.++=...+
T Consensus        19 V~~~a~spdg~~las~~~d~~v~iWd~~~---~~~~~l~gh~----------------~~V~~l~fspdg~~las~~~d~   79 (577)
T 2ymu_A           19 VRGVAFSPDGQTIASASDDKTVKLWNRNG---QLLQTLTGHS----------------SSVWGVAFSPDGQTIASASDDK   79 (577)
T ss_dssp             EEEEEECTTSSCEEEEETTSEEEEECTTS---CEEEEEECCS----------------SCEEEEEECTTSSEEEEEETTS
T ss_pred             EEEEEECCCCCEEEEEeCCCEEEEEECCC---CEEEEEeCCC----------------CCEEEEEECCCCCEEEEEeCCC
Confidence            36889999999877766778999999775   2344554431                1245799999998777666678


Q ss_pred             EEEEEc-CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCC
Q 011333          165 AIRKIS-DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHF  230 (488)
Q Consensus       165 rIrkid-~gg-VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g  230 (488)
                      .|+..+ ++. +.++.+..                 ....+|+ +.+++..+++-...+.++.++...
T Consensus        80 ~i~vWd~~~~~~~~~~~~~-----------------~~v~~~~-~s~d~~~l~~~~~d~~~~~~~~~~  129 (577)
T 2ymu_A           80 TVKLWNRNGQLLQTLTGHS-----------------SSVRGVA-FSPDGQTIASASDDKTVKLWNRNG  129 (577)
T ss_dssp             CEEEEETTSCEEEEECCCS-----------------SCEEEEE-ECTTSSEEEEEETTSCEEEEETTC
T ss_pred             EEEEEECCCCEEEEEECCC-----------------CCEEEEE-ECCCCCEEEEEcCCCceeeccccc
Confidence            899998 444 34443211                 1235666 455666666555566666666554

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=95.38  E-value=0.22  Score=47.26  Aligned_cols=106  Identities=11%  Similarity=0.041  Sum_probs=59.9

Q ss_pred             ceEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEECCCC
Q 011333           85 PYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNM  164 (488)
Q Consensus        85 P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~N~  164 (488)
                      ...++++++|.||++.. ++.|++++.++.   .+..+...                -..+..+++|++|+|||+.. ++
T Consensus       217 ~~~~~~~~~g~l~v~t~-~~gl~~~~~~g~---~~~~~~~~----------------~~~~~~~~~~~~g~l~v~t~-~g  275 (330)
T 3hxj_A          217 VTRPAISEDGTIYVTSL-DGHLYAINPDGT---EKWRFKTG----------------KRIESSPVIGNTDTIYFGSY-DG  275 (330)
T ss_dssp             CSCCEECTTSCEEEEET-TTEEEEECTTSC---EEEEEECS----------------SCCCSCCEECTTSCEEEECT-TC
T ss_pred             eeceEECCCCeEEEEcC-CCeEEEECCCCC---EeEEeeCC----------------CCccccceEcCCCeEEEecC-CC
Confidence            34556666667777654 346666665532   11111100                01234578888999999985 45


Q ss_pred             EEEEEc-CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcC
Q 011333          165 AIRKIS-DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLH  229 (488)
Q Consensus       165 rIrkid-~ggVttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~  229 (488)
                      .|.+++ ++..........                .....++ .+.+|+|||+.. ++.|......
T Consensus       276 gl~~~d~~g~~~~~~~~~~----------------~~~~~~~-~d~~g~l~~gt~-~G~~~~~~~~  323 (330)
T 3hxj_A          276 HLYAINPDGTEKWNFETGS----------------WIIATPV-IDENGTIYFGTR-NGKFYALFNL  323 (330)
T ss_dssp             EEEEECTTSCEEEEEECSS----------------CCCSCCE-ECTTCCEEEECT-TSCEEEEEC-
T ss_pred             CEEEECCCCcEEEEEEcCC----------------ccccceE-EcCCCEEEEEcC-CCeEEEEecc
Confidence            899998 444322221110                1234555 788999999754 5666666544

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=95.28  E-value=1.2  Score=41.48  Aligned_cols=114  Identities=6%  Similarity=-0.005  Sum_probs=72.2

Q ss_pred             CceEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEECCC
Q 011333           84 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMN  163 (488)
Q Consensus        84 ~P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~N  163 (488)
                      ....++++++|.++++-..++.|+.++....   +.......                -.....++++++|.++++-..+
T Consensus       185 ~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~---~~~~~~~~----------------~~~v~~~~~s~~~~~l~~~~~~  245 (337)
T 1gxr_A          185 GASCIDISNDGTKLWTGGLDNTVRSWDLREG---RQLQQHDF----------------TSQIFSLGYCPTGEWLAVGMES  245 (337)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEETTTT---EEEEEEEC----------------SSCEEEEEECTTSSEEEEEETT
T ss_pred             ceEEEEECCCCCEEEEEecCCcEEEEECCCC---ceEeeecC----------------CCceEEEEECCCCCEEEEEcCC
Confidence            4567778888876666656778888887642   22221111                1235678999999877776667


Q ss_pred             CEEEEEc-C-CCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCceE
Q 011333          164 MAIRKIS-D-SGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCA  234 (488)
Q Consensus       164 ~rIrkid-~-ggVttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g~~~~  234 (488)
                      +.|+.++ . +....+.+.                 -....+++ ..+++.++++-..++.|+.++.......
T Consensus       246 ~~i~~~~~~~~~~~~~~~~-----------------~~~v~~~~-~~~~~~~l~~~~~dg~i~~~~~~~~~~~  300 (337)
T 1gxr_A          246 SNVEVLHVNKPDKYQLHLH-----------------ESCVLSLK-FAYCGKWFVSTGKDNLLNAWRTPYGASI  300 (337)
T ss_dssp             SCEEEEETTSSCEEEECCC-----------------SSCEEEEE-ECTTSSEEEEEETTSEEEEEETTTCCEE
T ss_pred             CcEEEEECCCCCeEEEcCC-----------------ccceeEEE-ECCCCCEEEEecCCCcEEEEECCCCeEE
Confidence            8889888 3 334333221                 12346777 5667777777667888988887754443

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=95.26  E-value=0.31  Score=45.77  Aligned_cols=108  Identities=12%  Similarity=0.107  Sum_probs=66.6

Q ss_pred             CceEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEECCC
Q 011333           84 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMN  163 (488)
Q Consensus        84 ~P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~N  163 (488)
                      ....++++++|.++++-..++.|+.++....   ....+.+.                -.....++++++|.++++-..+
T Consensus       226 ~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~---~~~~~~~~----------------~~~v~~~~~~~~~~~l~~~~~d  286 (337)
T 1gxr_A          226 QIFSLGYCPTGEWLAVGMESSNVEVLHVNKP---DKYQLHLH----------------ESCVLSLKFAYCGKWFVSTGKD  286 (337)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTSS---CEEEECCC----------------SSCEEEEEECTTSSEEEEEETT
T ss_pred             ceEEEEECCCCCEEEEEcCCCcEEEEECCCC---CeEEEcCC----------------ccceeEEEECCCCCEEEEecCC
Confidence            3566777777776666555667777776642   22222111                2346789999999877777778


Q ss_pred             CEEEEEc-C-CCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEc
Q 011333          164 MAIRKIS-D-SGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQL  228 (488)
Q Consensus       164 ~rIrkid-~-ggVttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~  228 (488)
                      +.|+.++ . +........                 -....+++ +.+++.++++-..++.|+.+++
T Consensus       287 g~i~~~~~~~~~~~~~~~~-----------------~~~v~~~~-~s~~~~~l~~~~~dg~i~iw~~  335 (337)
T 1gxr_A          287 NLLNAWRTPYGASIFQSKE-----------------SSSVLSCD-ISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             SEEEEEETTTCCEEEEEEC-----------------SSCEEEEE-ECTTSCEEEEEETTSCEEEEEE
T ss_pred             CcEEEEECCCCeEEEEecC-----------------CCcEEEEE-ECCCCCEEEEecCCCeEEEEEE
Confidence            8999998 3 333222111                 11346777 5666766666666777877764

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=95.22  E-value=0.15  Score=56.34  Aligned_cols=113  Identities=8%  Similarity=-0.006  Sum_probs=68.2

Q ss_pred             CceEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEECCC
Q 011333           84 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMN  163 (488)
Q Consensus        84 ~P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~N  163 (488)
                      .-..|+.|++|.|||.-.  +.+.+++...   ++...+....       ...     ...-..|+.|++|+|||+-.  
T Consensus        89 ~I~~i~~d~~g~lWigT~--~Gl~~yd~~~---~~f~~~~~~~-------~~~-----~~~i~~i~~d~~g~lwi~t~--  149 (795)
T 4a2l_A           89 ISRIVKTDSQGRVWIGTR--DGLSRYDEEK---DIFQNFFYEK-------NGK-----HLQVNGIEEISPEQLLISTP--  149 (795)
T ss_dssp             CEEEEEECTTSCEEEEES--SCEEEEETTT---TEEEEECCEE-------TTE-----ECCCCEEEEEETTEEEEEET--
T ss_pred             ceeEEEECCCCCEEEEeC--CchheeCCCC---CeEEeccccc-------cCC-----CceEEEEEECCCCCEEEEEC--
Confidence            456788899999999875  4589999864   2333332110       000     01156799999999999974  


Q ss_pred             CEEEEEcCC-C-cEEEeCCccCCCCCCCCCCcccccCCC-CCeeEEECCCCeEEEEECCCCeEEEEEcCCCc
Q 011333          164 MAIRKISDS-G-VTTIAGGKWGRGGGHVDGPSEDAKFSN-DFDVVYIGSSCSLLVIDRGNRAIREIQLHFDD  232 (488)
Q Consensus       164 ~rIrkid~g-g-VttIaGg~~g~~~g~~dG~~~~a~f~~-P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g~~  232 (488)
                      +.|.+++.. + +..+...           .    .... ...|+ .+.+|.|||+-. ++.|.+++.....
T Consensus       150 ~gl~~~~~~~~~~~~~~~~-----------~----~~~~~i~~i~-~d~~g~lwigt~-~~Gl~~~~~~~~~  204 (795)
T 4a2l_A          150 EGLIMFDIKESKFIDDSFS-----------T----AMHKTIASTL-YRQGDQIYIGTS-TDGLYTYSITQKT  204 (795)
T ss_dssp             TEEEEEETTTTEEECSSSC-----------H----HHHTCCEEEE-EEETTEEEEEES-SSCEEEEETTTCC
T ss_pred             CceEEEECCCCEEEeccCC-----------C----CCCcceEEEE-ECCCCCEEEEEC-CCCEEEEeCCCCe
Confidence            668888832 2 3221100           0    0011 34565 677889999754 3347777765443

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=95.05  E-value=0.62  Score=45.13  Aligned_cols=114  Identities=12%  Similarity=0.177  Sum_probs=76.1

Q ss_pred             ceEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEECCCC
Q 011333           85 PYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNM  164 (488)
Q Consensus        85 P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~N~  164 (488)
                      ...++++++|.++++-..++.|+.++...+.  .+.++.+.                -...+.|+++++|.++++=...+
T Consensus       167 v~~~~~spdg~~lasg~~dg~i~iwd~~~~~--~~~~~~~h----------------~~~v~~l~~spd~~~l~s~s~dg  228 (321)
T 3ow8_A          167 ILSIAYSPDGKYLASGAIDGIINIFDIATGK--LLHTLEGH----------------AMPIRSLTFSPDSQLLVTASDDG  228 (321)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTTE--EEEEECCC----------------SSCCCEEEECTTSCEEEEECTTS
T ss_pred             EEEEEECCCCCEEEEEcCCCeEEEEECCCCc--EEEEEccc----------------CCceeEEEEcCCCCEEEEEcCCC
Confidence            4678888999887777777889999876521  22223221                11246799999999888777788


Q ss_pred             EEEEEc--CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCceE
Q 011333          165 AIRKIS--DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCA  234 (488)
Q Consensus       165 rIrkid--~gg-VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g~~~~  234 (488)
                      .|+.++  .+. +.++.+..                 ....+++ +.+++.++++-...+.|+.+++....+.
T Consensus       229 ~i~iwd~~~~~~~~~~~~h~-----------------~~v~~~~-~sp~~~~l~s~s~D~~v~iwd~~~~~~~  283 (321)
T 3ow8_A          229 YIKIYDVQHANLAGTLSGHA-----------------SWVLNVA-FCPDDTHFVSSSSDKSVKVWDVGTRTCV  283 (321)
T ss_dssp             CEEEEETTTCCEEEEECCCS-----------------SCEEEEE-ECTTSSEEEEEETTSCEEEEETTTTEEE
T ss_pred             eEEEEECCCcceeEEEcCCC-----------------CceEEEE-ECCCCCEEEEEeCCCcEEEEeCCCCEEE
Confidence            899998  333 33333211                 1245777 5667777777777888999988765554

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=94.72  E-value=0.21  Score=49.54  Aligned_cols=104  Identities=11%  Similarity=0.158  Sum_probs=67.6

Q ss_pred             EEEccCCcEEEEEC-CCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEECC----
Q 011333           88 VEVLPGGELLILDS-ANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTM----  162 (488)
Q Consensus        88 IaVd~dG~LYVaD~-~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~----  162 (488)
                      .++..++.||+++. .+++|++++.+|.   .+..+...                  .+..|.++ .+.||.++..    
T Consensus        20 ~~~~~g~~iy~~n~~d~~~ly~~~~dg~---~~~~l~~~------------------~~~~i~~~-g~~Iyy~~~~~~~~   77 (302)
T 3s25_A           20 LFCESDGEVFFSNTNDNGRLYAMNIDGS---NIHKLSND------------------TAMYINAD-KNYVYYVRNNNQKI   77 (302)
T ss_dssp             CEEEETTEEEEEEGGGTTEEEEEETTSC---SCEEEEEE------------------EEEEEEEC-SSEEEEEEECC---
T ss_pred             EEEEeCCEEEEEeCCCCceEEEEcCCCC---CCEEccCC------------------ceeeEEEc-CCEEEEEECCCCcc
Confidence            33445778999974 3689999999973   34444321                  14557766 4568887653    


Q ss_pred             ---------CCEEEEEc-CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEE---CCCCeEEEEEc
Q 011333          163 ---------NMAIRKIS-DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVID---RGNRAIREIQL  228 (488)
Q Consensus       163 ---------N~rIrkid-~gg-VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD---~gN~rIrkI~~  228 (488)
                               .+.|++++ +++ .+.+.... +                  ..++  ...+.||++|   .++..|+++++
T Consensus        78 ~~~~~~~~n~~~Iy~i~~dg~~~~~l~~~~-~------------------~~~s--~~g~~Iy~~~~~~~~~~~Iy~~~~  136 (302)
T 3s25_A           78 TSQTFFSYDRNSLCRIKRNGHGSTVLDPDP-C------------------IYAS--LIGNYIYYLHYDTQTATSLYRIRI  136 (302)
T ss_dssp             ---CCSSCCSEEEEEEETTSCCCEEEECSC-E------------------EEEE--EETTEEEEEEESSSSCEEEEEEET
T ss_pred             cccceeccCCCeEEEEeCCCCcceEeecCC-c------------------cEEE--EeCCEEEEEeecCCCCceEEEEEC
Confidence                     36899999 555 34443210 0                  1233  3567999999   78899999999


Q ss_pred             CCCceE
Q 011333          229 HFDDCA  234 (488)
Q Consensus       229 ~g~~~~  234 (488)
                      +|....
T Consensus       137 dGs~~~  142 (302)
T 3s25_A          137 DGEEKK  142 (302)
T ss_dssp             TSCCCE
T ss_pred             CCCCeE
Confidence            985443

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=94.71  E-value=0.55  Score=45.42  Aligned_cols=111  Identities=21%  Similarity=0.181  Sum_probs=68.4

Q ss_pred             eEEEEccCCcEEEEECCCCeEEEEeCCCCccccc---EEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEECC
Q 011333           86 YSVEVLPGGELLILDSANSNLYRISSSLSLYSRP---KLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTM  162 (488)
Q Consensus        86 ~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i---~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~  162 (488)
                      ..+.+|++|.||++  .+++|+|+++.......+   .+.+|.    .|.          +.=.-|+++++|+||.++  
T Consensus        91 ~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~----~gw----------~~~~~lff~p~G~Lyav~--  152 (236)
T 1tl2_A           91 QFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGS----GGW----------SGFKFLFFHPNGYLYAVH--  152 (236)
T ss_dssp             SEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEEC----SSG----------GGEEEEEECTTSCEEEEE--
T ss_pred             eEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEecc----CCC----------CceEEEEECCCceEEEEe--
Confidence            36889999999999  348999999842110111   122222    121          112679999999999999  


Q ss_pred             CCEEEEEc-C--CC------cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCce
Q 011333          163 NMAIRKIS-D--SG------VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDC  233 (488)
Q Consensus       163 N~rIrkid-~--gg------VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g~~~  233 (488)
                      +.++.+-. .  .+      .+++..+.+..             +   .-++ .+.+|.||.+.  +++|.+.......|
T Consensus       153 dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~-------------y---r~l~-f~~~G~l~~v~--~g~~Y~~~~p~~~~  213 (236)
T 1tl2_A          153 GQQFYKALPPVSNQDNWLARATKIGQGGWDT-------------F---KFLF-FSSVGTLFGVQ--GGKFYEDYPPSYAY  213 (236)
T ss_dssp             TTEEEEECCCSSTTCCHHHHCEEEESSSGGG-------------E---EEEE-ECTTSCEEEEE--TTEEEEESCCCSTT
T ss_pred             CCcEEecCCCCCCCcccccccceeccCCcce-------------E---EEEE-ECCCCcEEEEe--CCeEEecCCccccC
Confidence            55576544 2  11      22332122211             1   1244 78999999999  78999997664433

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=94.62  E-value=1.4  Score=43.36  Aligned_cols=121  Identities=10%  Similarity=0.017  Sum_probs=79.9

Q ss_pred             ceEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEECCCC
Q 011333           85 PYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNM  164 (488)
Q Consensus        85 P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~N~  164 (488)
                      -..|++.|+|.++++-...+.|+.++...+.  .+.++.... .   .     ..........+++.++|.++++-..++
T Consensus       252 v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~--~~~~~~~~~-~---~-----~~~~~~~v~~~~~s~~g~~l~~g~~dg  320 (380)
T 3iz6_a          252 INSVKFFPDGQRFGTGSDDGTCRLFDMRTGH--QLQVYNREP-D---R-----NDNELPIVTSVAFSISGRLLFAGYSNG  320 (380)
T ss_dssp             CCEEEECTTSSEEEEECSSSCEEEEETTTTE--EEEEECCCC-S---S-----SCCSSCSCSEEEECSSSSEEEEECTTS
T ss_pred             eEEEEEecCCCeEEEEcCCCeEEEEECCCCc--EEEEecccc-c---c-----cccccCceEEEEECCCCCEEEEEECCC
Confidence            4688999999998888888899999987521  222332211 0   0     001123357899999999998888889


Q ss_pred             EEEEEc--CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCC
Q 011333          165 AIRKIS--DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHF  230 (488)
Q Consensus       165 rIrkid--~gg-VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g  230 (488)
                      .|+.++  .+. +..+.....             ..-..-.+|+ +.++|.++++-...+.|+.++..+
T Consensus       321 ~i~vwd~~~~~~~~~~~~~~~-------------~h~~~v~~l~-~s~dg~~l~sgs~D~~i~iW~~~~  375 (380)
T 3iz6_a          321 DCYVWDTLLAEMVLNLGTLQN-------------SHEGRISCLG-LSSDGSALCTGSWDKNLKIWAFSG  375 (380)
T ss_dssp             CEEEEETTTCCEEEEECCSCS-------------SCCCCCCEEE-ECSSSSEEEEECTTSCEEEEECCS
T ss_pred             CEEEEECCCCceEEEEecccC-------------CCCCceEEEE-ECCCCCEEEEeeCCCCEEEEecCC
Confidence            999998  333 333321100             0112346788 677888888888888898888764

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=94.62  E-value=0.45  Score=48.73  Aligned_cols=75  Identities=13%  Similarity=0.137  Sum_probs=52.5

Q ss_pred             CCCCceEEEEcc-CCcEEEEECCCCeEEEEeCC--CCcccccEEEecCCCCccccCCCcccccccC-CcceEEEc--CC-
Q 011333           81 LGIEPYSVEVLP-GGELLILDSANSNLYRISSS--LSLYSRPKLVAGSAEGYSGHVDGKPREARMN-HPKGLTVD--DR-  153 (488)
Q Consensus        81 ~l~~P~GIaVd~-dG~LYVaD~~n~rI~kid~~--g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln-~P~GIAvD--~d-  153 (488)
                      +..+|.|+++|+ .|.|||++-.. .|++++.+  ++..+++...++.     |         .|. .+.||++.  ++ 
T Consensus       178 lgsq~EgcvvDd~~g~Lyv~eEd~-GIw~~da~p~~~~~~~~v~~~~~-----g---------~l~aDvEGLai~~~~~g  242 (355)
T 3amr_A          178 MNSQTEGMAADDEYGRLYIAEEDE-AIWKFSAEPDGGSNGTVIDRADG-----R---------HLTRDIEGLTIYYAADG  242 (355)
T ss_dssp             CSSCEEEEEEETTTTEEEEEETTT-EEEEEECSTTSCSCCEEEEEBSS-----S---------SBCSCEEEEEEEECGGG
T ss_pred             CCCCcceEEEcCCCCeEEEecccc-eEEEEeCCcCCCCCceEEEEecC-----C---------ccccCcceEEEEecCCC
Confidence            345899999997 68899999875 59999954  3211222222221     0         143 69999995  33 


Q ss_pred             -CcEEEEECCCCEEEEEc
Q 011333          154 -GNIYIADTMNMAIRKIS  170 (488)
Q Consensus       154 -G~LYVAD~~N~rIrkid  170 (488)
                       |.|++++.+++....|+
T Consensus       243 ~gyLivSsQG~~s~~Vyd  260 (355)
T 3amr_A          243 KGYLMASSQGNSSYAIYD  260 (355)
T ss_dssp             CEEEEEEEGGGTEEEEEE
T ss_pred             CEEEEEEcCCCCEEEEEE
Confidence             45999999999999998

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=94.58  E-value=0.52  Score=45.70  Aligned_cols=108  Identities=11%  Similarity=0.115  Sum_probs=71.6

Q ss_pred             ceEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEECCCC
Q 011333           85 PYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNM  164 (488)
Q Consensus        85 P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~N~  164 (488)
                      ...++++++|.++++-...+.|+.++.....  .+.++.|.                -.....|++.++|.++++=...+
T Consensus       209 v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~--~~~~~~~h----------------~~~v~~~~~sp~~~~l~s~s~D~  270 (321)
T 3ow8_A          209 IRSLTFSPDSQLLVTASDDGYIKIYDVQHAN--LAGTLSGH----------------ASWVLNVAFCPDDTHFVSSSSDK  270 (321)
T ss_dssp             CCEEEECTTSCEEEEECTTSCEEEEETTTCC--EEEEECCC----------------SSCEEEEEECTTSSEEEEEETTS
T ss_pred             eeEEEEcCCCCEEEEEcCCCeEEEEECCCcc--eeEEEcCC----------------CCceEEEEECCCCCEEEEEeCCC
Confidence            4678888888888877777888888876421  22233221                12356799999998888777788


Q ss_pred             EEEEEc-C-CC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEc
Q 011333          165 AIRKIS-D-SG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQL  228 (488)
Q Consensus       165 rIrkid-~-gg-VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~  228 (488)
                      .|+.++ . +. +.++.+..                 ...++|+ ..+++..+++-...+.|+.++.
T Consensus       271 ~v~iwd~~~~~~~~~~~~h~-----------------~~v~~v~-~s~~g~~l~s~~~d~~i~vwd~  319 (321)
T 3ow8_A          271 SVKVWDVGTRTCVHTFFDHQ-----------------DQVWGVK-YNGNGSKIVSVGDDQEIHIYDC  319 (321)
T ss_dssp             CEEEEETTTTEEEEEECCCS-----------------SCEEEEE-ECTTSSEEEEEETTCCEEEEEC
T ss_pred             cEEEEeCCCCEEEEEEcCCC-----------------CcEEEEE-ECCCCCEEEEEeCCCeEEEEeC
Confidence            899998 3 33 34443311                 1346788 5667777777777788888764

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=94.34  E-value=1.1  Score=42.17  Aligned_cols=114  Identities=16%  Similarity=0.192  Sum_probs=73.8

Q ss_pred             CceEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEECCC
Q 011333           84 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMN  163 (488)
Q Consensus        84 ~P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~N  163 (488)
                      .-..++++++|.++++-...+.|+.++...+.  ....+.+.                -..-..|++.++|+++++=...
T Consensus        25 ~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~--~~~~~~~h----------------~~~v~~~~~~~~~~~l~s~~~d   86 (312)
T 4ery_A           25 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGK--FEKTISGH----------------KLGISDVAWSSDSNLLVSASDD   86 (312)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTTCC--EEEEECCC----------------SSCEEEEEECTTSSEEEEEETT
T ss_pred             cEEEEEECCCCCEEEEeeCCCeEEEEeCCCcc--cchhhccC----------------CCceEEEEEcCCCCEEEEECCC
Confidence            34688899999987776677889999876421  22233221                1124679999999888877678


Q ss_pred             CEEEEEc--CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCce
Q 011333          164 MAIRKIS--DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDC  233 (488)
Q Consensus       164 ~rIrkid--~gg-VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g~~~  233 (488)
                      +.|+.++  .+. +.++.+..                 ..-.+++ ..++++++++-...+.|+.+++....+
T Consensus        87 ~~i~vwd~~~~~~~~~~~~~~-----------------~~v~~~~-~~~~~~~l~s~~~d~~i~iwd~~~~~~  141 (312)
T 4ery_A           87 KTLKIWDVSSGKCLKTLKGHS-----------------NYVFCCN-FNPQSNLIVSGSFDESVRIWDVKTGKC  141 (312)
T ss_dssp             SEEEEEETTTCCEEEEEECCS-----------------SCEEEEE-ECSSSSEEEEEETTSCEEEEETTTCCE
T ss_pred             CEEEEEECCCCcEEEEEcCCC-----------------CCEEEEE-EcCCCCEEEEEeCCCcEEEEECCCCEE
Confidence            8999998  333 44444321                 1224566 456666666666677888888765444

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=94.26  E-value=0.46  Score=46.94  Aligned_cols=115  Identities=8%  Similarity=0.022  Sum_probs=71.5

Q ss_pred             ceEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCC-cEEEEECCC
Q 011333           85 PYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRG-NIYIADTMN  163 (488)
Q Consensus        85 P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG-~LYVAD~~N  163 (488)
                      -..|++.++|.++++-...+.|+.++...+.  .+.++.|.                -..-..+++.+++ .++++=...
T Consensus       130 V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~--~~~~~~~h----------------~~~V~~~~~~~~~~~~l~s~s~D  191 (344)
T 4gqb_B          130 VSTVSVLSSGTQAVSGSKDICIKVWDLAQQV--VLSSYRAH----------------AAQVTCVAASPHKDSVFLSCSED  191 (344)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTTE--EEEEECCC----------------SSCEEEEEECSSCTTEEEEEETT
T ss_pred             EEEEEECCCCCEEEEEeCCCeEEEEECCCCc--EEEEEcCc----------------CCceEEEEecCCCCCceeeeccc
Confidence            3678899999988887777899999987532  23333222                1224578888887 477766667


Q ss_pred             CEEEEEc--CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCc
Q 011333          164 MAIRKIS--DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDD  232 (488)
Q Consensus       164 ~rIrkid--~gg-VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g~~  232 (488)
                      +.|+.+|  .+. +.++.....               -....++++.+.+++++++-..++.|+.++.....
T Consensus       192 ~~v~iwd~~~~~~~~~~~~~~~---------------~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~  248 (344)
T 4gqb_B          192 NRILLWDTRCPKPASQIGCSAP---------------GYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTS  248 (344)
T ss_dssp             SCEEEEETTSSSCEEECC-------------------CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--
T ss_pred             cccccccccccceeeeeeccee---------------eccceeeeecCCCCcceEEeccCCcEEEEECCCCc
Confidence            8888888  333 333221110               11345677555566777776677888888876543

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=94.23  E-value=1.4  Score=41.81  Aligned_cols=112  Identities=6%  Similarity=0.050  Sum_probs=75.5

Q ss_pred             CceEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEECCC
Q 011333           84 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMN  163 (488)
Q Consensus        84 ~P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~N  163 (488)
                      .-..|+++|+|.++++-...+.|+.++...+.  .+..+.+..                ..-..+++.++|+++++=...
T Consensus        15 ~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~--~~~~~~~~~----------------~~v~~~~~~~~~~~l~s~s~d   76 (304)
T 2ynn_A           15 RVKGIDFHPTEPWVLTTLYSGRVELWNYETQV--EVRSIQVTE----------------TPVRAGKFIARKNWIIVGSDD   76 (304)
T ss_dssp             CEEEEEECSSSSEEEEEETTSEEEEEETTTTE--EEEEEECCS----------------SCEEEEEEEGGGTEEEEEETT
T ss_pred             ceEEEEECCCCCEEEEEcCCCcEEEEECCCCc--eeEEeeccC----------------CcEEEEEEeCCCCEEEEECCC
Confidence            35688999999988887778899999987532  233332220                113467888899888777778


Q ss_pred             CEEEEEc--CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCC
Q 011333          164 MAIRKIS--DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFD  231 (488)
Q Consensus       164 ~rIrkid--~gg-VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g~  231 (488)
                      +.|+.++  .+. +.++.+..                 ..-.+|+ +.+++.++++-...+.|+.++....
T Consensus        77 ~~i~vwd~~~~~~~~~~~~h~-----------------~~v~~~~-~~~~~~~l~sgs~D~~v~lWd~~~~  129 (304)
T 2ynn_A           77 FRIRVFNYNTGEKVVDFEAHP-----------------DYIRSIA-VHPTKPYVLSGSDDLTVKLWNWENN  129 (304)
T ss_dssp             SEEEEEETTTCCEEEEEECCS-----------------SCEEEEE-ECSSSSEEEEEETTSCEEEEEGGGT
T ss_pred             CEEEEEECCCCcEEEEEeCCC-----------------CcEEEEE-EcCCCCEEEEECCCCeEEEEECCCC
Confidence            8999998  333 44443321                 1235677 5667777777777888888887654

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=94.21  E-value=0.96  Score=43.82  Aligned_cols=113  Identities=11%  Similarity=0.091  Sum_probs=71.3

Q ss_pred             ceEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEECCCC
Q 011333           85 PYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNM  164 (488)
Q Consensus        85 P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~N~  164 (488)
                      ...+++.++|.++++-...+.|+.++...+.  .+.++.+.                -...+.|++.++|+++++=...+
T Consensus       187 v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~--~~~~~~~h----------------~~~v~~v~~~p~~~~l~s~s~d~  248 (340)
T 1got_B          187 VMSLSLAPDTRLFVSGACDASAKLWDVREGM--CRQTFTGH----------------ESDINAICFFPNGNAFATGSDDA  248 (340)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTCS--EEEEECCC----------------SSCEEEEEECTTSSEEEEEETTS
T ss_pred             eEEEEECCCCCEEEEEeCCCcEEEEECCCCe--eEEEEcCC----------------cCCEEEEEEcCCCCEEEEEcCCC
Confidence            3567777777777776666777777765321  12222221                12356899999999888877788


Q ss_pred             EEEEEc-CC-C-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCC
Q 011333          165 AIRKIS-DS-G-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFD  231 (488)
Q Consensus       165 rIrkid-~g-g-VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g~  231 (488)
                      .|+.++ .. . +.++....               .......++ +.++|.++++-..++.|+.++....
T Consensus       249 ~v~iwd~~~~~~~~~~~~~~---------------~~~~v~~~~-~s~~g~~l~~g~~d~~i~vwd~~~~  302 (340)
T 1got_B          249 TCRLFDLRADQELMTYSHDN---------------IICGITSVS-FSKSGRLLLAGYDDFNCNVWDALKA  302 (340)
T ss_dssp             CEEEEETTTTEEEEEECCTT---------------CCSCEEEEE-ECTTSSEEEEEETTSEEEEEETTTC
T ss_pred             cEEEEECCCCcEEEEEccCC---------------cccceEEEE-ECCCCCEEEEECCCCeEEEEEcccC
Confidence            899998 32 2 22222110               011235677 5778888888778888999887643

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=94.03  E-value=1.3  Score=41.82  Aligned_cols=110  Identities=15%  Similarity=0.058  Sum_probs=70.7

Q ss_pred             CceEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEECCC
Q 011333           84 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMN  163 (488)
Q Consensus        84 ~P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~N  163 (488)
                      .-..++++++|.++++-..++.|+.++...+.  .+..+.+.                -.....|+++++|+++++=...
T Consensus        34 ~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~h----------------~~~v~~~~~~~~~~~l~s~~~d   95 (369)
T 3zwl_B           34 PLTQVKYNKEGDLLFSCSKDSSASVWYSLNGE--RLGTLDGH----------------TGTIWSIDVDCFTKYCVTGSAD   95 (369)
T ss_dssp             CEEEEEECTTSCEEEEEESSSCEEEEETTTCC--EEEEECCC----------------SSCEEEEEECTTSSEEEEEETT
T ss_pred             eEEEEEEcCCCCEEEEEeCCCEEEEEeCCCch--hhhhhhhc----------------CCcEEEEEEcCCCCEEEEEeCC
Confidence            35688899999977776667889999876421  23333221                1234678999999877766668


Q ss_pred             CEEEEEc--CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCC-----CeEEEEEcCC
Q 011333          164 MAIRKIS--DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGN-----RAIREIQLHF  230 (488)
Q Consensus       164 ~rIrkid--~gg-VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN-----~rIrkI~~~g  230 (488)
                      +.|+.++  .+. +.++...                  ....+++ ..+++..+++-..+     +.|+.++...
T Consensus        96 g~i~iwd~~~~~~~~~~~~~------------------~~v~~~~-~~~~~~~l~~~~~~~~~~~g~i~~~d~~~  151 (369)
T 3zwl_B           96 YSIKLWDVSNGQCVATWKSP------------------VPVKRVE-FSPCGNYFLAILDNVMKNPGSINIYEIER  151 (369)
T ss_dssp             TEEEEEETTTCCEEEEEECS------------------SCEEEEE-ECTTSSEEEEEECCBTTBCCEEEEEEEEE
T ss_pred             CeEEEEECCCCcEEEEeecC------------------CCeEEEE-EccCCCEEEEecCCccCCCCEEEEEEecC
Confidence            8899998  333 3333211                  1345677 45666666655555     7788777654

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=94.02  E-value=0.7  Score=44.16  Aligned_cols=115  Identities=8%  Similarity=-0.053  Sum_probs=71.3

Q ss_pred             ceEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEECCCC
Q 011333           85 PYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNM  164 (488)
Q Consensus        85 P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~N~  164 (488)
                      -..++++++|.++++-..++.|+.++..+.....+..+.+.                -.....|++.++|+++++=...+
T Consensus        11 i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h----------------~~~v~~~~~~~~~~~l~~~~~dg   74 (372)
T 1k8k_C           11 ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEH----------------NGQVTGVDWAPDSNRIVTCGTDR   74 (372)
T ss_dssp             CCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECC----------------SSCEEEEEEETTTTEEEEEETTS
T ss_pred             eEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCC----------------CCcccEEEEeCCCCEEEEEcCCC
Confidence            46788999999888877788999998875311123333322                12356899999998777655677


Q ss_pred             EEEEEc--CCCc-EEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCC
Q 011333          165 AIRKIS--DSGV-TTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFD  231 (488)
Q Consensus       165 rIrkid--~ggV-ttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g~  231 (488)
                      .|+.++  .+.. ..+.-..               .-....+++ ..+++.++++-..++.|+.++....
T Consensus        75 ~i~vwd~~~~~~~~~~~~~~---------------~~~~v~~~~-~~~~~~~l~~~~~d~~v~i~d~~~~  128 (372)
T 1k8k_C           75 NAYVWTLKGRTWKPTLVILR---------------INRAARCVR-WAPNEKKFAVGSGSRVISICYFEQE  128 (372)
T ss_dssp             CEEEEEEETTEEEEEEECCC---------------CSSCEEEEE-ECTTSSEEEEEETTSSEEEEEEETT
T ss_pred             eEEEEECCCCeeeeeEEeec---------------CCCceeEEE-ECCCCCEEEEEeCCCEEEEEEecCC
Confidence            888887  4432 2221110               011346777 4556665555556677877776654

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=93.96  E-value=0.87  Score=49.98  Aligned_cols=120  Identities=10%  Similarity=-0.002  Sum_probs=77.1

Q ss_pred             CCceEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEECC
Q 011333           83 IEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTM  162 (488)
Q Consensus        83 ~~P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~  162 (488)
                      .....|+.|++|.|||+-.++ -|.++++++   +.+..+...        ++.    .-+...+|+.|++|+|||+-. 
T Consensus       495 ~~i~~i~~d~~g~lWigt~~~-Gl~~~~~~~---~~~~~~~~~--------~~l----~~~~i~~i~~d~~g~lWi~T~-  557 (781)
T 3v9f_A          495 NFVRSIAQDSEGRFWIGTFGG-GVGIYTPDM---QLVRKFNQY--------EGF----CSNTINQIYRSSKGQMWLATG-  557 (781)
T ss_dssp             SCEEEEEECTTCCEEEEESSS-CEEEECTTC---CEEEEECTT--------TTC----SCSCEEEEEECTTSCEEEEET-
T ss_pred             ceeEEEEEcCCCCEEEEEcCC-CEEEEeCCC---CeEEEccCC--------CCC----CCCeeEEEEECCCCCEEEEEC-
Confidence            356788999999999997643 488899875   334443211        110    123457899999999999986 


Q ss_pred             CCEEEEEc-C-CCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCceEE
Q 011333          163 NMAIRKIS-D-SGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCAY  235 (488)
Q Consensus       163 N~rIrkid-~-ggVttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g~~~~~  235 (488)
                      ++-|.+++ . +.+..+. ..        +|.+.    +...+|+ .|.+|+|||+-  ++-|.++++.......
T Consensus       558 ~Glv~~~d~~~~~~~~~~-~~--------~gl~~----~~i~~i~-~d~~g~lW~~t--~~Gl~~~~~~~~~~~~  616 (781)
T 3v9f_A          558 EGLVCFPSARNFDYQVFQ-RK--------EGLPN----THIRAIS-EDKNGNIWAST--NTGISCYITSKKCFYT  616 (781)
T ss_dssp             TEEEEESCTTTCCCEEEC-GG--------GTCSC----CCCCEEE-ECSSSCEEEEC--SSCEEEEETTTTEEEE
T ss_pred             CCceEEECCCCCcEEEcc-cc--------CCCCC----ceEEEEE-ECCCCCEEEEc--CCceEEEECCCCceEE
Confidence            44338888 3 3354432 11        11111    1235787 79999999985  4569999988654443

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=93.92  E-value=2.7  Score=39.50  Aligned_cols=114  Identities=16%  Similarity=0.118  Sum_probs=73.6

Q ss_pred             CceEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEECCC
Q 011333           84 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMN  163 (488)
Q Consensus        84 ~P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~N  163 (488)
                      .-..+++.++|+++++-..++.|+.++.....  .+..+.+.                -..-..+++.++++++++=...
T Consensus        67 ~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~--~~~~~~~~----------------~~~v~~~~~~~~~~~l~s~~~d  128 (312)
T 4ery_A           67 GISDVAWSSDSNLLVSASDDKTLKIWDVSSGK--CLKTLKGH----------------SNYVFCCNFNPQSNLIVSGSFD  128 (312)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEETTTCC--EEEEEECC----------------SSCEEEEEECSSSSEEEEEETT
T ss_pred             ceEEEEEcCCCCEEEEECCCCEEEEEECCCCc--EEEEEcCC----------------CCCEEEEEEcCCCCEEEEEeCC
Confidence            34688899999988887778899999987521  23333322                1124568889999887776677


Q ss_pred             CEEEEEc--CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCce
Q 011333          164 MAIRKIS--DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDC  233 (488)
Q Consensus       164 ~rIrkid--~gg-VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g~~~  233 (488)
                      +.|+.++  .+. +.++.+..                 .....++ ..+++.++++-...+.|+.+++....+
T Consensus       129 ~~i~iwd~~~~~~~~~~~~~~-----------------~~v~~~~-~~~~~~~l~~~~~d~~i~~wd~~~~~~  183 (312)
T 4ery_A          129 ESVRIWDVKTGKCLKTLPAHS-----------------DPVSAVH-FNRDGSLIVSSSYDGLCRIWDTASGQC  183 (312)
T ss_dssp             SCEEEEETTTCCEEEEECCCS-----------------SCEEEEE-ECTTSSEEEEEETTSCEEEEETTTCCE
T ss_pred             CcEEEEECCCCEEEEEecCCC-----------------CcEEEEE-EcCCCCEEEEEeCCCcEEEEECCCCce
Confidence            8899888  333 33332210                 1224566 466676666666677888888765443

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=93.74  E-value=1.1  Score=43.68  Aligned_cols=109  Identities=7%  Similarity=-0.015  Sum_probs=72.5

Q ss_pred             ceEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCc-EEEEECCC
Q 011333           85 PYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-IYIADTMN  163 (488)
Q Consensus        85 P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~-LYVAD~~N  163 (488)
                      ...+++.++|.++++-..++.|+.++..+   ..+..+.+.                -.....|++.+++. ++++-...
T Consensus       166 v~~~~~~~~~~~l~~~~~d~~i~i~d~~~---~~~~~~~~h----------------~~~v~~~~~~~~~~~~l~s~~~d  226 (383)
T 3ei3_B          166 YCCVDVSVSRQMLATGDSTGRLLLLGLDG---HEIFKEKLH----------------KAKVTHAEFNPRCDWLMATSSVD  226 (383)
T ss_dssp             EEEEEEETTTTEEEEEETTSEEEEEETTS---CEEEEEECS----------------SSCEEEEEECSSCTTEEEEEETT
T ss_pred             eEEEEECCCCCEEEEECCCCCEEEEECCC---CEEEEeccC----------------CCcEEEEEECCCCCCEEEEEeCC
Confidence            56788888888777776778888888764   233333322                22357899999998 77777678


Q ss_pred             CEEEEEc--C----CCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECC-CCeEEEEECCCCeEEEEEcCC
Q 011333          164 MAIRKIS--D----SGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGS-SCSLLVIDRGNRAIREIQLHF  230 (488)
Q Consensus       164 ~rIrkid--~----ggVttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~-~G~LYVaD~gN~rIrkI~~~g  230 (488)
                      +.|+.++  .    +......+.                 -....+|+ +.+ ++.++++-...+.|+.+++..
T Consensus       227 ~~i~iwd~~~~~~~~~~~~~~~~-----------------~~~v~~~~-~s~~~~~~l~~~~~d~~i~iwd~~~  282 (383)
T 3ei3_B          227 ATVKLWDLRNIKDKNSYIAEMPH-----------------EKPVNAAY-FNPTDSTKLLTTDQRNEIRVYSSYD  282 (383)
T ss_dssp             SEEEEEEGGGCCSTTCEEEEEEC-----------------SSCEEEEE-ECTTTSCEEEEEESSSEEEEEETTB
T ss_pred             CEEEEEeCCCCCcccceEEEecC-----------------CCceEEEE-EcCCCCCEEEEEcCCCcEEEEECCC
Confidence            8899988  2    222222221                 11346777 455 777777767778899998764

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=93.56  E-value=3  Score=40.92  Aligned_cols=116  Identities=13%  Similarity=0.106  Sum_probs=73.3

Q ss_pred             CceEEEEccCC-cEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEECC
Q 011333           84 EPYSVEVLPGG-ELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTM  162 (488)
Q Consensus        84 ~P~GIaVd~dG-~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~  162 (488)
                      ....|++.++| +++++-...+.|+.++...+   ........    .++         -.....|+++++|+++++=..
T Consensus       133 ~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~----~~~---------~~~v~~~~~~~~~~~l~~~~~  196 (402)
T 2aq5_A          133 RVGIVAWHPTAQNVLLSAGCDNVILVWDVGTG---AAVLTLGP----DVH---------PDTIYSVDWSRDGALICTSCR  196 (402)
T ss_dssp             CEEEEEECSSBTTEEEEEETTSCEEEEETTTT---EEEEEECT----TTC---------CSCEEEEEECTTSSCEEEEET
T ss_pred             eEEEEEECcCCCCEEEEEcCCCEEEEEECCCC---CccEEEec----CCC---------CCceEEEEECCCCCEEEEEec
Confidence            45678899987 57777666788999998752   22222210    011         123568999999986666656


Q ss_pred             CCEEEEEc-C-CC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEE---CCCCeEEEEEcCCC
Q 011333          163 NMAIRKIS-D-SG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVID---RGNRAIREIQLHFD  231 (488)
Q Consensus       163 N~rIrkid-~-gg-VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD---~gN~rIrkI~~~g~  231 (488)
                      .+.|+.++ . +. +.++..+..+               ..+..++ ..+++.++++-   ..++.|+.++....
T Consensus       197 d~~i~iwd~~~~~~~~~~~~~~~~---------------~~~~~~~-~~~~~~~l~~g~~~~~d~~i~iwd~~~~  255 (402)
T 2aq5_A          197 DKRVRVIEPRKGTVVAEKDRPHEG---------------TRPVHAV-FVSEGKILTTGFSRMSERQVALWDTKHL  255 (402)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSCS---------------SSCCEEE-ECSTTEEEEEEECTTCCEEEEEEETTBC
T ss_pred             CCcEEEEeCCCCceeeeeccCCCC---------------CcceEEE-EcCCCcEEEEeccCCCCceEEEEcCccc
Confidence            78999999 3 33 3333111110               1246677 56678887776   57788999988753

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=93.49  E-value=1.2  Score=44.13  Aligned_cols=112  Identities=13%  Similarity=0.046  Sum_probs=73.3

Q ss_pred             ceEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEECCCC
Q 011333           85 PYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNM  164 (488)
Q Consensus        85 P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~N~  164 (488)
                      -..+++.++|.++++-...+.|+.++.....  .+.++.|.                -..-..|++.++|+.+++-...+
T Consensus       126 v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~--~~~~~~~h----------------~~~v~~~~~~p~~~~l~s~s~d~  187 (393)
T 1erj_A          126 IRSVCFSPDGKFLATGAEDRLIRIWDIENRK--IVMILQGH----------------EQDIYSLDYFPSGDKLVSGSGDR  187 (393)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTTE--EEEEECCC----------------SSCEEEEEECTTSSEEEEEETTS
T ss_pred             EEEEEECCCCCEEEEEcCCCeEEEEECCCCc--EEEEEccC----------------CCCEEEEEEcCCCCEEEEecCCC
Confidence            3578899999988887778899999987521  22233221                12246789999998877777788


Q ss_pred             EEEEEc-C-CCc-EEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCc
Q 011333          165 AIRKIS-D-SGV-TTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDD  232 (488)
Q Consensus       165 rIrkid-~-ggV-ttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g~~  232 (488)
                      .|+.++ . +.. .++...                  .....+++.+.++.++++-...+.|+.++.....
T Consensus       188 ~v~iwd~~~~~~~~~~~~~------------------~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~  240 (393)
T 1erj_A          188 TVRIWDLRTGQCSLTLSIE------------------DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGF  240 (393)
T ss_dssp             EEEEEETTTTEEEEEEECS------------------SCEEEEEECSTTCCEEEEEETTSCEEEEETTTCC
T ss_pred             cEEEEECCCCeeEEEEEcC------------------CCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCc
Confidence            999998 3 332 222211                  1234566444477777777777888888876543

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=93.42  E-value=1.6  Score=43.05  Aligned_cols=117  Identities=9%  Similarity=0.067  Sum_probs=72.2

Q ss_pred             CceEEEEcc-CCcEEEEECCCCeEEEEeCCCCcc-----cccEEEecCCCCccccCCCcccccccCCcceEEEcCCC-cE
Q 011333           84 EPYSVEVLP-GGELLILDSANSNLYRISSSLSLY-----SRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRG-NI  156 (488)
Q Consensus        84 ~P~GIaVd~-dG~LYVaD~~n~rI~kid~~g~~~-----g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG-~L  156 (488)
                      .-..+++++ +++++++-...+.|+.++......     ..+..+.+.                -.....|++.++| ++
T Consensus        83 ~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h----------------~~~v~~~~~~p~~~~~  146 (402)
T 2aq5_A           83 PVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGH----------------TKRVGIVAWHPTAQNV  146 (402)
T ss_dssp             CEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECC----------------SSCEEEEEECSSBTTE
T ss_pred             CEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCC----------------CCeEEEEEECcCCCCE
Confidence            346888998 888888877788999999774311     112333222                1235679999998 57


Q ss_pred             EEEECCCCEEEEEc-C-CC-cEEEe-CCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCc
Q 011333          157 YIADTMNMAIRKIS-D-SG-VTTIA-GGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDD  232 (488)
Q Consensus       157 YVAD~~N~rIrkid-~-gg-VttIa-Gg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g~~  232 (488)
                      +++=...+.|+.++ . +. +.++. .+.                -....+++ ..+++.++++-...+.|+.+++....
T Consensus       147 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~----------------~~~v~~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~  209 (402)
T 2aq5_A          147 LLSAGCDNVILVWDVGTGAAVLTLGPDVH----------------PDTIYSVD-WSRDGALICTSCRDKRVRVIEPRKGT  209 (402)
T ss_dssp             EEEEETTSCEEEEETTTTEEEEEECTTTC----------------CSCEEEEE-ECTTSSCEEEEETTSEEEEEETTTTE
T ss_pred             EEEEcCCCEEEEEECCCCCccEEEecCCC----------------CCceEEEE-ECCCCCEEEEEecCCcEEEEeCCCCc
Confidence            77665678888888 3 33 33331 110                01235666 45566665555566788888876544


Q ss_pred             e
Q 011333          233 C  233 (488)
Q Consensus       233 ~  233 (488)
                      +
T Consensus       210 ~  210 (402)
T 2aq5_A          210 V  210 (402)
T ss_dssp             E
T ss_pred             e
Confidence            4

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=93.36  E-value=1.3  Score=41.74  Aligned_cols=114  Identities=11%  Similarity=0.054  Sum_probs=70.6

Q ss_pred             CceEEEEccC---CcEEEEECCCCeEEEEeCCCCccccc-EEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEE
Q 011333           84 EPYSVEVLPG---GELLILDSANSNLYRISSSLSLYSRP-KLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIA  159 (488)
Q Consensus        84 ~P~GIaVd~d---G~LYVaD~~n~rI~kid~~g~~~g~i-~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVA  159 (488)
                      .-..|+++++   |.++++-..++.|+.++..... ..+ ..+.+.                -.....|++.++|+++++
T Consensus        41 ~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~-~~~~~~~~~h----------------~~~v~~~~~~~~~~~l~s  103 (368)
T 3mmy_A           41 SIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSG-QTIPKAQQMH----------------TGPVLDVCWSDDGSKVFT  103 (368)
T ss_dssp             CEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTS-CEEEEEEEEC----------------SSCEEEEEECTTSSEEEE
T ss_pred             ceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCC-ceeEEEeccc----------------cCCEEEEEECcCCCEEEE
Confidence            3467888887   5877776667888888876311 122 233222                123567999999987666


Q ss_pred             ECCCCEEEEEc-C-CCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEE-CCCCeEEEEECCCCeEEEEEcCCC
Q 011333          160 DTMNMAIRKIS-D-SGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYI-GSSCSLLVIDRGNRAIREIQLHFD  231 (488)
Q Consensus       160 D~~N~rIrkid-~-ggVttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~v-d~~G~LYVaD~gN~rIrkI~~~g~  231 (488)
                      =..++.|+.++ . +....+.+..                 ....++++. .+++.++++-..++.|+.+++...
T Consensus       104 ~~~dg~v~iwd~~~~~~~~~~~~~-----------------~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~  161 (368)
T 3mmy_A          104 ASCDKTAKMWDLSSNQAIQIAQHD-----------------APVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSS  161 (368)
T ss_dssp             EETTSEEEEEETTTTEEEEEEECS-----------------SCEEEEEEEECSSCEEEEEEETTSEEEEECSSCS
T ss_pred             EcCCCcEEEEEcCCCCceeecccc-----------------CceEEEEEEeCCCCCEEEEccCCCcEEEEECCCC
Confidence            66688899998 3 3333332211                 123556631 567776666666778888887643

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=93.22  E-value=1.9  Score=40.66  Aligned_cols=110  Identities=13%  Similarity=0.024  Sum_probs=66.1

Q ss_pred             CceEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEECCC
Q 011333           84 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMN  163 (488)
Q Consensus        84 ~P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~N  163 (488)
                      ....++++++|.++++-..++.|+.++.....  .+..+..                 -.....++++++|..+++-...
T Consensus       220 ~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~--~~~~~~~-----------------~~~~~~~~~~~~~~~l~~~~~~  280 (369)
T 3zwl_B          220 SISDMQFSPDLTYFITSSRDTNSFLVDVSTLQ--VLKKYET-----------------DCPLNTAVITPLKEFIILGGGQ  280 (369)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEETTTCC--EEEEEEC-----------------SSCEEEEEECSSSSEEEEEECC
T ss_pred             ceeEEEECCCCCEEEEecCCceEEEEECCCCc--eeeeecC-----------------CCCceeEEecCCCceEEEeecC
Confidence            45677888888866666667788888876421  1222211                 1234578888888755544333


Q ss_pred             C--------------EEEEEc--CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEE
Q 011333          164 M--------------AIRKIS--DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREI  226 (488)
Q Consensus       164 ~--------------rIrkid--~gg-VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI  226 (488)
                      .              .|+.++  .+. +.++.+.                 -....+++ +.+++.++++-...+.|+.+
T Consensus       281 ~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~-----------------~~~v~~~~-~s~~~~~l~s~~~dg~v~iw  342 (369)
T 3zwl_B          281 EAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGH-----------------FGPLNTVA-ISPQGTSYASGGEDGFIRLH  342 (369)
T ss_dssp             C-------------CEEEEEETTTCCEEEEEECC-----------------SSCEEEEE-ECTTSSEEEEEETTSEEEEE
T ss_pred             CCceEEEEecCCCcceeEEEecCCCcchhheecc-----------------cCcEEEEE-ECCCCCEEEEEcCCCeEEEE
Confidence            3              566666  222 3333321                 12346777 56677777777777888888


Q ss_pred             EcCC
Q 011333          227 QLHF  230 (488)
Q Consensus       227 ~~~g  230 (488)
                      +...
T Consensus       343 ~~~~  346 (369)
T 3zwl_B          343 HFEK  346 (369)
T ss_dssp             EECH
T ss_pred             ECcc
Confidence            8753

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=93.17  E-value=1.3  Score=48.71  Aligned_cols=119  Identities=9%  Similarity=0.001  Sum_probs=75.3

Q ss_pred             CceEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEECCC
Q 011333           84 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMN  163 (488)
Q Consensus        84 ~P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~N  163 (488)
                      ....|+.|++|.|||+..  +.|.++++.+.   .+..+.... .      ..   ..-+...+|+.|++|+|||+-..+
T Consensus       451 ~v~~i~~d~~g~lwigt~--~Gl~~~~~~~~---~~~~~~~~~-~------~~---~~~~~i~~i~~d~~g~lWigt~~~  515 (781)
T 3v9f_A          451 DVRVFYEDKNKKIWIGTH--AGVFVIDLASK---KVIHHYDTS-N------SQ---LLENFVRSIAQDSEGRFWIGTFGG  515 (781)
T ss_dssp             CEEEEEECTTSEEEEEET--TEEEEEESSSS---SCCEEECTT-T------SS---CSCSCEEEEEECTTCCEEEEESSS
T ss_pred             eEEEEEECCCCCEEEEEC--CceEEEeCCCC---eEEecccCc-c------cc---cccceeEEEEEcCCCCEEEEEcCC
Confidence            456788888999999876  57999998752   333332210 0      00   012457799999999999997643


Q ss_pred             CEEEEEc-CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCce
Q 011333          164 MAIRKIS-DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDC  233 (488)
Q Consensus       164 ~rIrkid-~gg-VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g~~~  233 (488)
                       -|.+++ +++ +..+.. ..        +.    .-+...+|+ .|.+|+|||+-. ++.|.++++.....
T Consensus       516 -Gl~~~~~~~~~~~~~~~-~~--------~l----~~~~i~~i~-~d~~g~lWi~T~-~Glv~~~d~~~~~~  571 (781)
T 3v9f_A          516 -GVGIYTPDMQLVRKFNQ-YE--------GF----CSNTINQIY-RSSKGQMWLATG-EGLVCFPSARNFDY  571 (781)
T ss_dssp             -CEEEECTTCCEEEEECT-TT--------TC----SCSCEEEEE-ECTTSCEEEEET-TEEEEESCTTTCCC
T ss_pred             -CEEEEeCCCCeEEEccC-CC--------CC----CCCeeEEEE-ECCCCCEEEEEC-CCceEEECCCCCcE
Confidence             477888 333 444321 11        11    012346776 789999999876 55548888765443

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=93.08  E-value=1.3  Score=42.84  Aligned_cols=109  Identities=6%  Similarity=0.050  Sum_probs=68.7

Q ss_pred             CceEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEECCC
Q 011333           84 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMN  163 (488)
Q Consensus        84 ~P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~N  163 (488)
                      ....|++.|+|.++++-...+.|+.++.....  .+..+ ...    +         .......++++++|.++++=..+
T Consensus       228 ~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~--~~~~~-~~~----~---------~~~~v~~~~~s~~g~~l~~g~~d  291 (340)
T 1got_B          228 DINAICFFPNGNAFATGSDDATCRLFDLRADQ--ELMTY-SHD----N---------IICGITSVSFSKSGRLLLAGYDD  291 (340)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTTTE--EEEEE-CCT----T---------CCSCEEEEEECTTSSEEEEEETT
T ss_pred             CEEEEEEcCCCCEEEEEcCCCcEEEEECCCCc--EEEEE-ccC----C---------cccceEEEEECCCCCEEEEECCC
Confidence            34678888888877777777888888876421  11222 110    0         01234678999999988887778


Q ss_pred             CEEEEEc--CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEE
Q 011333          164 MAIRKIS--DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREI  226 (488)
Q Consensus       164 ~rIrkid--~gg-VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI  226 (488)
                      +.|+.++  .+. +.++.+-.                 ..-.+|+ +.++|.++++-...+.|+.+
T Consensus       292 ~~i~vwd~~~~~~~~~~~~h~-----------------~~v~~~~-~s~dg~~l~s~s~D~~i~iW  339 (340)
T 1got_B          292 FNCNVWDALKADRAGVLAGHD-----------------NRVSCLG-VTDDGMAVATGSWDSFLKIW  339 (340)
T ss_dssp             SEEEEEETTTCCEEEEEECCS-----------------SCEEEEE-ECTTSSCEEEEETTSCEEEE
T ss_pred             CeEEEEEcccCcEeeEeecCC-----------------CcEEEEE-EcCCCCEEEEEcCCccEEec
Confidence            8999998  333 44554321                 1235677 56677766666666667654

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=93.05  E-value=3.4  Score=41.64  Aligned_cols=114  Identities=15%  Similarity=0.139  Sum_probs=63.5

Q ss_pred             CceEEEEccCCc-EEEEEC--CCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCc-EEEE
Q 011333           84 EPYSVEVLPGGE-LLILDS--ANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-IYIA  159 (488)
Q Consensus        84 ~P~GIaVd~dG~-LYVaD~--~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~-LYVA  159 (488)
                      ....++++|||. |+++..  ++..|+.++..+   +....+.+.                -.....+++.++|. |+++
T Consensus       224 ~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~---~~~~~l~~~----------------~~~~~~~~~spdg~~l~~~  284 (415)
T 2hqs_A          224 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLAS---GQIRQVTDG----------------RSNNTEPTWFPDSQNLAFT  284 (415)
T ss_dssp             CEEEEEECTTSSEEEEEECTTSSCEEEEEETTT---CCEEECCCC----------------SSCEEEEEECTTSSEEEEE
T ss_pred             cccCEEEcCCCCEEEEEEecCCCceEEEEECCC---CCEEeCcCC----------------CCcccceEECCCCCEEEEE
Confidence            346788888887 554432  345688888775   333333222                01245789999997 5544


Q ss_pred             EC--CCCEEEEEc-CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCC-eEEEEECC--CCeEEEEEcCCCc
Q 011333          160 DT--MNMAIRKIS-DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSC-SLLVIDRG--NRAIREIQLHFDD  232 (488)
Q Consensus       160 D~--~N~rIrkid-~gg-VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G-~LYVaD~g--N~rIrkI~~~g~~  232 (488)
                      -.  +..+|..++ .++ +..+....                 .....+++ .++| .|+++...  ...|+.+++.+..
T Consensus       285 s~~~g~~~i~~~d~~~~~~~~l~~~~-----------------~~~~~~~~-spdG~~l~~~~~~~g~~~i~~~d~~~~~  346 (415)
T 2hqs_A          285 SDQAGRPQVYKVNINGGAPQRITWEG-----------------SQNQDADV-SSDGKFMVMVSSNGGQQHIAKQDLATGG  346 (415)
T ss_dssp             ECTTSSCEEEEEETTSSCCEECCCSS-----------------SEEEEEEE-CTTSSEEEEEEECSSCEEEEEEETTTCC
T ss_pred             ECCCCCcEEEEEECCCCCEEEEecCC-----------------CcccCeEE-CCCCCEEEEEECcCCceEEEEEECCCCC
Confidence            32  234788888 333 44332210                 12235663 4444 45555443  3578888877655


Q ss_pred             eE
Q 011333          233 CA  234 (488)
Q Consensus       233 ~~  234 (488)
                      +.
T Consensus       347 ~~  348 (415)
T 2hqs_A          347 VQ  348 (415)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}

Probab=93.02  E-value=0.95  Score=49.33  Aligned_cols=121  Identities=17%  Similarity=0.161  Sum_probs=71.8

Q ss_pred             cccCCcceEEEcC-CCcEEEEECCC---------------------CEEEEEc-CC---C-------cEEEeCCccCCCC
Q 011333          140 ARMNHPKGLTVDD-RGNIYIADTMN---------------------MAIRKIS-DS---G-------VTTIAGGKWGRGG  186 (488)
Q Consensus       140 a~Ln~P~GIAvD~-dG~LYVAD~~N---------------------~rIrkid-~g---g-------VttIaGg~~g~~~  186 (488)
                      ..|..|.||++++ +|.||||-+.|                     .+|.++. ++   .       +..++|.......
T Consensus       381 T~f~RpEgi~~~p~~g~vY~a~Tn~~~rg~~~~~~~~~np~~~n~~G~I~r~~~~~~d~~a~~f~w~~~v~~g~p~~~~~  460 (592)
T 3zwu_A          381 TRMDRPEWIVVSPKDGQVYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHASKTFAWDLFVVAGNPSVHAG  460 (592)
T ss_dssp             CCEECEEEEEECTTTCCEEEEECCBTTTTSTTCCCBTTBCCSSBSSCEEEEEEEGGGCTTCSEEEEEEEEECCCTTTSTT
T ss_pred             EEEeccceeEEcCCCCEEEEEecCCcccccCcccccccccccCCcceeEEEEecCCCccccceeEEEEEEeccCcccccc
Confidence            4689999999997 78999998753                     4688886 11   1       1222232111000


Q ss_pred             C---CCCCCcccccCCCCCeeEEECCCCeEEEEEC------------CCCeEEEEEcCCCceEEe-c--cCCCcceEEEE
Q 011333          187 G---HVDGPSEDAKFSNDFDVVYIGSSCSLLVIDR------------GNRAIREIQLHFDDCAYQ-Y--GSSFPLGIAVL  248 (488)
Q Consensus       187 g---~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~------------gN~rIrkI~~~g~~~~~~-~--~~g~P~GIav~  248 (488)
                      .   ..........|+.|-.|+ +++.|+|||+.-            +|+.++.+.+.......+ .  .....+|+++.
T Consensus       461 ~~~~~~~~~~~~~~f~~PDNL~-fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fs  539 (592)
T 3zwu_A          461 TPKGGSSNITPQNMFNSPDGLG-FDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFS  539 (592)
T ss_dssp             SGGGCCTTCCTTTCCCCEEEEE-ECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEEC
T ss_pred             cccccccccCCCCCccCCcceE-ECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeEC
Confidence            0   011122345699999999 799999999864            356777776653322221 1  11245566666


Q ss_pred             ecCCceEEEEEEEEec
Q 011333          249 LAAGFFGYMLALLQRR  264 (488)
Q Consensus       249 ~g~g~~Gy~~a~l~~~  264 (488)
                      ..   .-+++...|++
T Consensus       540 pD---g~tlfvniQHP  552 (592)
T 3zwu_A          540 PD---QKTLFVGIQHP  552 (592)
T ss_dssp             TT---SSEEEEEEEST
T ss_pred             CC---CCEEEEEEECC
Confidence            43   12567777877

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=92.97  E-value=0.87  Score=45.65  Aligned_cols=114  Identities=14%  Similarity=0.179  Sum_probs=75.3

Q ss_pred             CceEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEECCC
Q 011333           84 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMN  163 (488)
Q Consensus        84 ~P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~N  163 (488)
                      ....+++++++.++++-...+.|+.++...+.  ...++.|.                -..-..|+++++|+++++=...
T Consensus       110 ~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~--~~~~l~~h----------------~~~V~~v~~~~~~~~l~sgs~D  171 (410)
T 1vyh_C          110 PVTRVIFHPVFSVMVSASEDATIKVWDYETGD--FERTLKGH----------------TDSVQDISFDHSGKLLASCSAD  171 (410)
T ss_dssp             CEEEEEECSSSSEEEEEESSSCEEEEETTTCC--CCEEECCC----------------SSCEEEEEECTTSSEEEEEETT
T ss_pred             cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc--EEEEEecc----------------CCcEEEEEEcCCCCEEEEEeCC
Confidence            34688899999988888788899999987532  23334322                1124679999999988877777


Q ss_pred             CEEEEEc-CC-C-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCce
Q 011333          164 MAIRKIS-DS-G-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDC  233 (488)
Q Consensus       164 ~rIrkid-~g-g-VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g~~~  233 (488)
                      +.|+.++ .+ . +.++.+.                 -..-.+++ +.+++..+++-...+.|+.++.....+
T Consensus       172 ~~i~iwd~~~~~~~~~~~~h-----------------~~~V~~v~-~~p~~~~l~s~s~D~~i~~wd~~~~~~  226 (410)
T 1vyh_C          172 MTIKLWDFQGFECIRTMHGH-----------------DHNVSSVS-IMPNGDHIVSASRDKTIKMWEVQTGYC  226 (410)
T ss_dssp             SCCCEEETTSSCEEECCCCC-----------------SSCEEEEE-ECSSSSEEEEEETTSEEEEEETTTCCE
T ss_pred             CeEEEEeCCCCceeEEEcCC-----------------CCCEEEEE-EeCCCCEEEEEeCCCeEEEEECCCCcE
Confidence            8888888 32 2 2222221                 01235667 456676666666778888888765544

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=92.88  E-value=0.9  Score=43.95  Aligned_cols=68  Identities=12%  Similarity=-0.044  Sum_probs=46.9

Q ss_pred             CceEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEECCC
Q 011333           84 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMN  163 (488)
Q Consensus        84 ~P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~N  163 (488)
                      ....+++.++| ++++-...+.|+.++.....  .+..+.+.                -.....++++++|+++++-..+
T Consensus       291 ~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~--~~~~~~~~----------------~~~i~~~~~s~~~~~l~~~~~d  351 (425)
T 1r5m_A          291 SIVSASWVGDD-KVISCSMDGSVRLWSLKQNT--LLALSIVD----------------GVPIFAGRISQDGQKYAVAFMD  351 (425)
T ss_dssp             CEEEEEEETTT-EEEEEETTSEEEEEETTTTE--EEEEEECT----------------TCCEEEEEECTTSSEEEEEETT
T ss_pred             cEEEEEECCCC-EEEEEeCCCcEEEEECCCCc--EeEecccC----------------CccEEEEEEcCCCCEEEEEECC
Confidence            45678888888 66666667899999986421  22222221                1235689999999877777677


Q ss_pred             CEEEEEc
Q 011333          164 MAIRKIS  170 (488)
Q Consensus       164 ~rIrkid  170 (488)
                      +.|+.++
T Consensus       352 g~i~i~~  358 (425)
T 1r5m_A          352 GQVNVYD  358 (425)
T ss_dssp             SCEEEEE
T ss_pred             CeEEEEE
Confidence            8888888

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=92.88  E-value=4.5  Score=39.70  Aligned_cols=119  Identities=10%  Similarity=0.057  Sum_probs=70.4

Q ss_pred             EEEEcc-CCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEECCCCE
Q 011333           87 SVEVLP-GGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNMA  165 (488)
Q Consensus        87 GIaVd~-dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~N~r  165 (488)
                      .+++.+ +++++++-...+.|+.++..... ..+.++.|.                -..-+.|++.++|..+++=...+.
T Consensus       210 ~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~-~~~~~~~~h----------------~~~v~~v~~~p~~~~l~s~s~D~~  272 (380)
T 3iz6_a          210 SLSINSLNANMFISGSCDTTVRLWDLRITS-RAVRTYHGH----------------EGDINSVKFFPDGQRFGTGSDDGT  272 (380)
T ss_dssp             EEEECSSSCCEEEEEETTSCEEEEETTTTC-CCCEEECCC----------------SSCCCEEEECTTSSEEEEECSSSC
T ss_pred             EEEeecCCCCEEEEEECCCeEEEEECCCCC-cceEEECCc----------------CCCeEEEEEecCCCeEEEEcCCCe
Confidence            444443 55666665555666666653110 112223221                123567999999999888888889


Q ss_pred             EEEEc-C-CC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCce
Q 011333          166 IRKIS-D-SG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDC  233 (488)
Q Consensus       166 Irkid-~-gg-VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g~~~  233 (488)
                      |+.++ . +. +.++......          ..........++ +.++|.++++-..++.|+.++.....+
T Consensus       273 i~lwd~~~~~~~~~~~~~~~~----------~~~~~~~v~~~~-~s~~g~~l~~g~~dg~i~vwd~~~~~~  332 (380)
T 3iz6_a          273 CRLFDMRTGHQLQVYNREPDR----------NDNELPIVTSVA-FSISGRLLFAGYSNGDCYVWDTLLAEM  332 (380)
T ss_dssp             EEEEETTTTEEEEEECCCCSS----------SCCSSCSCSEEE-ECSSSSEEEEECTTSCEEEEETTTCCE
T ss_pred             EEEEECCCCcEEEEecccccc----------cccccCceEEEE-ECCCCCEEEEEECCCCEEEEECCCCce
Confidence            99999 3 33 3333221100          011122346788 577888888888889999998765443

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=92.81  E-value=1.2  Score=44.66  Aligned_cols=113  Identities=14%  Similarity=0.129  Sum_probs=74.9

Q ss_pred             ceEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEECCCC
Q 011333           85 PYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNM  164 (488)
Q Consensus        85 P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~N~  164 (488)
                      -..|+++++|.++++-...+.|+.++..+..  .+.++.|       +         -..-..+++.++|+.+++=...+
T Consensus       153 V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~--~~~~~~~-------h---------~~~V~~v~~~p~~~~l~s~s~D~  214 (410)
T 1vyh_C          153 VQDISFDHSGKLLASCSADMTIKLWDFQGFE--CIRTMHG-------H---------DHNVSSVSIMPNGDHIVSASRDK  214 (410)
T ss_dssp             EEEEEECTTSSEEEEEETTSCCCEEETTSSC--EEECCCC-------C---------SSCEEEEEECSSSSEEEEEETTS
T ss_pred             EEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc--eeEEEcC-------C---------CCCEEEEEEeCCCCEEEEEeCCC
Confidence            4678888888888877777888888876421  1222211       1         12246789999998888777788


Q ss_pred             EEEEEc--CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCce
Q 011333          165 AIRKIS--DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDC  233 (488)
Q Consensus       165 rIrkid--~gg-VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g~~~  233 (488)
                      .|+.++  .+. +.++.+..                 ..-..++ ..+++.++++-...+.|+.++.....+
T Consensus       215 ~i~~wd~~~~~~~~~~~~h~-----------------~~v~~~~-~~~~g~~l~s~s~D~~v~vwd~~~~~~  268 (410)
T 1vyh_C          215 TIKMWEVQTGYCVKTFTGHR-----------------EWVRMVR-PNQDGTLIASCSNDQTVRVWVVATKEC  268 (410)
T ss_dssp             EEEEEETTTCCEEEEEECCS-----------------SCEEEEE-ECTTSSEEEEEETTSCEEEEETTTCCE
T ss_pred             eEEEEECCCCcEEEEEeCCC-----------------ccEEEEE-ECCCCCEEEEEcCCCeEEEEECCCCce
Confidence            999998  333 45554321                 1224556 567788877777788888888765444

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=92.76  E-value=1.1  Score=43.32  Aligned_cols=141  Identities=16%  Similarity=0.064  Sum_probs=75.5

Q ss_pred             CceEEEEccCCcEEEEECCC---CeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEE
Q 011333           84 EPYSVEVLPGGELLILDSAN---SNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIAD  160 (488)
Q Consensus        84 ~P~GIaVd~dG~LYVaD~~n---~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD  160 (488)
                      ....++++++|.++++-...   +.|+.++.....  .+..+.+...  ... .-....+.-.....|+++++|.++++-
T Consensus       235 ~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~--~~~~~~~~~~--~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~  309 (397)
T 1sq9_A          235 SIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGE--RIGSLSVPTH--SSQ-ASLGEFAHSSWVMSLSFNDSGETLCSA  309 (397)
T ss_dssp             CEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCC--EEEEECBC-----------CCBSBSSCEEEEEECSSSSEEEEE
T ss_pred             ccceEEECCCCCEEEEEecCCCCceEEEEECCCCc--ccceeccCcc--ccc-ccccccccCCcEEEEEECCCCCEEEEE
Confidence            45788899999877776656   789999976421  2333332100  000 000000012235689999999888877


Q ss_pred             CCCCEEEEEc--CCC-cEEEeCCccCCCC--CCCCCCc--ccccCCCCCeeEEECCCC----------eEEEEECCCCeE
Q 011333          161 TMNMAIRKIS--DSG-VTTIAGGKWGRGG--GHVDGPS--EDAKFSNDFDVVYIGSSC----------SLLVIDRGNRAI  223 (488)
Q Consensus       161 ~~N~rIrkid--~gg-VttIaGg~~g~~~--g~~dG~~--~~a~f~~P~gIa~vd~~G----------~LYVaD~gN~rI  223 (488)
                      ..++.|+.++  .+. +.++.........  ....|..  ....-....++++ .+++          .++++-...+.|
T Consensus       310 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~-~~~g~~~~~~~~~~~~l~s~~~dg~i  388 (397)
T 1sq9_A          310 GWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKF-LKKGWRSGMGADLNESLCCVCLDRSI  388 (397)
T ss_dssp             ETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEE-ECTTTSBSTTCTTSCEEEEEETTTEE
T ss_pred             eCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEe-ccccccccccccccceEEEecCCCcE
Confidence            7789999999  333 4444411000000  0000000  0000123567884 5555          677776678888


Q ss_pred             EEEEcCC
Q 011333          224 REIQLHF  230 (488)
Q Consensus       224 rkI~~~g  230 (488)
                      +.+++..
T Consensus       389 ~iw~~~~  395 (397)
T 1sq9_A          389 RWFREAG  395 (397)
T ss_dssp             EEEEEEC
T ss_pred             EEEEcCC
Confidence            8887653

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=92.66  E-value=3.5  Score=40.22  Aligned_cols=130  Identities=17%  Similarity=0.209  Sum_probs=75.4

Q ss_pred             CceEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEECCC
Q 011333           84 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMN  163 (488)
Q Consensus        84 ~P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~N  163 (488)
                      ....++++++|.++++-..++.|+.++...+.  .+..+.+.                -.....|++.++|.++++=...
T Consensus       141 ~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~--~~~~~~~h----------------~~~v~~~~~~~~~~~l~s~~~d  202 (420)
T 3vl1_A          141 EITKLKFFPSGEALISSSQDMQLKIWSVKDGS--NPRTLIGH----------------RATVTDIAIIDRGRNVLSASLD  202 (420)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEETTTCC--CCEEEECC----------------SSCEEEEEEETTTTEEEEEETT
T ss_pred             ccEEEEECCCCCEEEEEeCCCeEEEEeCCCCc--CceEEcCC----------------CCcEEEEEEcCCCCEEEEEcCC
Confidence            45788899999877777777899999986432  33344332                1235678899998877766667


Q ss_pred             CEEEEEc--CCC-cEEEeCCccCCCCC--------CCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCc
Q 011333          164 MAIRKIS--DSG-VTTIAGGKWGRGGG--------HVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDD  232 (488)
Q Consensus       164 ~rIrkid--~gg-VttIaGg~~g~~~g--------~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g~~  232 (488)
                      +.|+.++  .+. +.++....... ..        ..........-.....++ +.+++.++++-..++.|+.+++....
T Consensus       203 ~~v~iwd~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~v~~~~-~s~~~~~l~~~~~dg~i~i~d~~~~~  280 (420)
T 3vl1_A          203 GTIRLWECGTGTTIHTFNRKENPH-DGVNSIALFVGTDRQLHEISTSKKNNLE-FGTYGKYVIAGHVSGVITVHNVFSKE  280 (420)
T ss_dssp             SCEEEEETTTTEEEEEECBTTBTT-CCEEEEEEEECCCSSCGGGCCCCCCTTC-SSCTTEEEEEEETTSCEEEEETTTCC
T ss_pred             CcEEEeECCCCceeEEeecCCCCC-CCccEEEEecCCcceeeecccCcccceE-EcCCCCEEEEEcCCCeEEEEECCCCc
Confidence            7888888  333 33333211000 00        000000000112334555 46677777777777888888876544


Q ss_pred             e
Q 011333          233 C  233 (488)
Q Consensus       233 ~  233 (488)
                      .
T Consensus       281 ~  281 (420)
T 3vl1_A          281 Q  281 (420)
T ss_dssp             E
T ss_pred             e
Confidence            3

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=92.64  E-value=2.6  Score=39.97  Aligned_cols=110  Identities=8%  Similarity=0.082  Sum_probs=71.7

Q ss_pred             eEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEECCCCE
Q 011333           86 YSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNMA  165 (488)
Q Consensus        86 ~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~N~r  165 (488)
                      ..+++.++|+++++-...+.|+.++...+.  .+..+.+.                -..-..|++.+++.++++=...+.
T Consensus        59 ~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~--~~~~~~~h----------------~~~v~~~~~~~~~~~l~sgs~D~~  120 (304)
T 2ynn_A           59 RAGKFIARKNWIIVGSDDFRIRVFNYNTGE--KVVDFEAH----------------PDYIRSIAVHPTKPYVLSGSDDLT  120 (304)
T ss_dssp             EEEEEEGGGTEEEEEETTSEEEEEETTTCC--EEEEEECC----------------SSCEEEEEECSSSSEEEEEETTSC
T ss_pred             EEEEEeCCCCEEEEECCCCEEEEEECCCCc--EEEEEeCC----------------CCcEEEEEEcCCCCEEEEECCCCe
Confidence            467788899988887778899999987532  23333332                112467999999988887777888


Q ss_pred             EEEEc-CCC--c-EEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCC
Q 011333          166 IRKIS-DSG--V-TTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHF  230 (488)
Q Consensus       166 Irkid-~gg--V-ttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g  230 (488)
                      |+.++ ..+  + .++.+..                 ....++++.+.++.++++-...+.|+.+++..
T Consensus       121 v~lWd~~~~~~~~~~~~~h~-----------------~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~  172 (304)
T 2ynn_A          121 VKLWNWENNWALEQTFEGHE-----------------HFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ  172 (304)
T ss_dssp             EEEEEGGGTTEEEEEECCCC-----------------SCEEEEEECTTCTTEEEEEETTSEEEEEETTC
T ss_pred             EEEEECCCCcchhhhhcccC-----------------CcEEEEEECCCCCCEEEEEeCCCeEEEEECCC
Confidence            99888 322  2 2232211                 12356774444667777766778888888754

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=92.39  E-value=1.7  Score=41.93  Aligned_cols=109  Identities=12%  Similarity=-0.003  Sum_probs=70.1

Q ss_pred             ceEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEECCCC
Q 011333           85 PYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNM  164 (488)
Q Consensus        85 P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~N~  164 (488)
                      ...++++++|.++++-..++.|+.++.....  .+..+.+.                -.....+++.++| ++++-...+
T Consensus       250 i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~--~~~~~~~~----------------~~~i~~~~~~~~~-~l~~~~~d~  310 (425)
T 1r5m_A          250 ISVLEFNDTNKLLLSASDDGTLRIWHGGNGN--SQNCFYGH----------------SQSIVSASWVGDD-KVISCSMDG  310 (425)
T ss_dssp             EEEEEEETTTTEEEEEETTSCEEEECSSSBS--CSEEECCC----------------SSCEEEEEEETTT-EEEEEETTS
T ss_pred             eEEEEECCCCCEEEEEcCCCEEEEEECCCCc--cceEecCC----------------CccEEEEEECCCC-EEEEEeCCC
Confidence            4677888888877766667788888876421  22333221                1235678999998 666666788


Q ss_pred             EEEEEc-C-CC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCC
Q 011333          165 AIRKIS-D-SG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHF  230 (488)
Q Consensus       165 rIrkid-~-gg-VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g  230 (488)
                      .|+.++ . +. +.++.+..                 .....++ +.+++.++++-..++.|+.++...
T Consensus       311 ~i~i~d~~~~~~~~~~~~~~-----------------~~i~~~~-~s~~~~~l~~~~~dg~i~i~~~~~  361 (425)
T 1r5m_A          311 SVRLWSLKQNTLLALSIVDG-----------------VPIFAGR-ISQDGQKYAVAFMDGQVNVYDLKK  361 (425)
T ss_dssp             EEEEEETTTTEEEEEEECTT-----------------CCEEEEE-ECTTSSEEEEEETTSCEEEEECHH
T ss_pred             cEEEEECCCCcEeEecccCC-----------------ccEEEEE-EcCCCCEEEEEECCCeEEEEECCC
Confidence            999998 3 33 33333211                 1345677 566777777777778899888764

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=92.36  E-value=4.6  Score=38.91  Aligned_cols=132  Identities=11%  Similarity=0.011  Sum_probs=75.3

Q ss_pred             CceEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEECCC
Q 011333           84 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMN  163 (488)
Q Consensus        84 ~P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~N  163 (488)
                      ....+++.++| ++++-..++.|+.++.....  .+..+.+.    .++.      ..-.....|+++++|+++++-...
T Consensus       188 ~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~--~~~~~~~~----~~h~------~~~~~i~~i~~~~~~~~l~~~~~d  254 (397)
T 1sq9_A          188 FATSVDISERG-LIATGFNNGTVQISELSTLR--PLYNFESQ----HSMI------NNSNSIRSVKFSPQGSLLAIAHDS  254 (397)
T ss_dssp             CCCEEEECTTS-EEEEECTTSEEEEEETTTTE--EEEEEECC----C---------CCCCCEEEEEECSSTTEEEEEEEE
T ss_pred             CceEEEECCCc-eEEEEeCCCcEEEEECCCCc--eeEEEecc----cccc------ccCCccceEEECCCCCEEEEEecC
Confidence            46789999999 88888888999999987421  22233220    0000      001235689999999877766556


Q ss_pred             ---CEEEEEc--CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCce
Q 011333          164 ---MAIRKIS--DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDC  233 (488)
Q Consensus       164 ---~rIrkid--~gg-VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g~~~  233 (488)
                         +.|+.++  .+. +.++.+.....  ...  ....+.-....+++ ..+++.++++-..++.|+.+++....+
T Consensus       255 ~~~g~i~i~d~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~v~~~~-~~~~~~~l~~~~~dg~i~iwd~~~~~~  325 (397)
T 1sq9_A          255 NSFGCITLYETEFGERIGSLSVPTHSS--QAS--LGEFAHSSWVMSLS-FNDSGETLCSAGWDGKLRFWDVKTKER  325 (397)
T ss_dssp             TTEEEEEEEETTTCCEEEEECBC------------CCBSBSSCEEEEE-ECSSSSEEEEEETTSEEEEEETTTTEE
T ss_pred             CCCceEEEEECCCCcccceeccCcccc--ccc--ccccccCCcEEEEE-ECCCCCEEEEEeCCCeEEEEEcCCCce
Confidence               7899998  333 34443310000  000  00000112345677 456676666666778888888865443

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=92.25  E-value=4.1  Score=44.66  Aligned_cols=118  Identities=10%  Similarity=0.025  Sum_probs=74.7

Q ss_pred             CceEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEECCC
Q 011333           84 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMN  163 (488)
Q Consensus        84 ~P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~N  163 (488)
                      ....|+.|++|.|||+..  +.|.++++.+.   .+ .+.... ..    ++    ..-+...+|+.|++|+|||+-.. 
T Consensus       499 ~i~~i~~d~~g~lWigt~--~Gl~~~~~~~~---~~-~~~~~~-~~----~~----l~~~~i~~i~~d~~g~lWigT~~-  562 (795)
T 4a2l_A          499 QITTLFRDSHKRLWIGGE--EGLSVFKQEGL---DI-QKASIL-PV----SN----VTKLFTNCIYEASNGIIWVGTRE-  562 (795)
T ss_dssp             CEEEEEECTTCCEEEEES--SCEEEEEEETT---EE-EECCCS-CS----CG----GGGSCEEEEEECTTSCEEEEESS-
T ss_pred             eEEEEEECCCCCEEEEeC--CceEEEeCCCC---eE-EEecCC-CC----CC----CCCCeeEEEEECCCCCEEEEeCC-
Confidence            346788899999999986  46888887652   22 221100 00    00    01234678999999999999863 


Q ss_pred             CEEEEEc-CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCceE
Q 011333          164 MAIRKIS-DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCA  234 (488)
Q Consensus       164 ~rIrkid-~gg-VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g~~~~  234 (488)
                       -|.+++ ..+ +..+ ...        +|.+.    +...+|+ .|.+|+|||+-  ++-|.++++......
T Consensus       563 -Gl~~~d~~~~~~~~~-~~~--------~gl~~----~~i~~i~-~d~~g~lWi~t--~~Gl~~~~~~~~~~~  618 (795)
T 4a2l_A          563 -GFYCFNEKDKQIKRY-NTT--------NGLPN----NVVYGIL-EDSFGRLWLST--NRGISCFNPETEKFR  618 (795)
T ss_dssp             -CEEEEETTTTEEEEE-CGG--------GTCSC----SCEEEEE-ECTTSCEEEEE--TTEEEEEETTTTEEE
T ss_pred             -CceeECCCCCcEEEe-CCC--------CCCch----hheEEEE-ECCCCCEEEEc--CCceEEEcCCCCcEE
Confidence             688888 333 4433 211        11111    1235676 78999999987  577899998765544

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=92.07  E-value=1.7  Score=42.51  Aligned_cols=108  Identities=10%  Similarity=0.108  Sum_probs=66.5

Q ss_pred             ceEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEECCCC
Q 011333           85 PYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNM  164 (488)
Q Consensus        85 P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~N~  164 (488)
                      -..+++.|+|.++++-...+.|+.++.....  .+..+...              ........+++.++|.+.++-...+
T Consensus       243 v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~--~~~~~~~~--------------~~~~~~~~~~~s~~g~~l~~g~~d~  306 (354)
T 2pbi_B          243 VNSVRYYPSGDAFASGSDDATCRLYDLRADR--EVAIYSKE--------------SIIFGASSVDFSLSGRLLFAGYNDY  306 (354)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTTE--EEEEECCT--------------TCCSCEEEEEECTTSSEEEEEETTS
T ss_pred             eEEEEEeCCCCEEEEEeCCCeEEEEECCCCc--EEEEEcCC--------------CcccceeEEEEeCCCCEEEEEECCC
Confidence            3567777777777766666778777765321  11222110              0012346789999999888776778


Q ss_pred             EEEEEc--CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEE
Q 011333          165 AIRKIS--DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREI  226 (488)
Q Consensus       165 rIrkid--~gg-VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI  226 (488)
                      .|+.++  .+. +.++.+..                 ....+|+ +.++|.++++-...+.|+.+
T Consensus       307 ~i~vwd~~~~~~~~~l~~h~-----------------~~v~~l~-~spdg~~l~sgs~D~~v~vW  353 (354)
T 2pbi_B          307 TINVWDVLKGSRVSILFGHE-----------------NRVSTLR-VSPDGTAFCSGSWDHTLRVW  353 (354)
T ss_dssp             CEEEEETTTCSEEEEECCCS-----------------SCEEEEE-ECTTSSCEEEEETTSEEEEE
T ss_pred             cEEEEECCCCceEEEEECCC-----------------CcEEEEE-ECCCCCEEEEEcCCCCEEec
Confidence            899998  344 44443321                 1346777 56777777776667777765

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=92.03  E-value=2.1  Score=41.57  Aligned_cols=113  Identities=10%  Similarity=0.001  Sum_probs=75.1

Q ss_pred             CceEEEEcc-CCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEECC
Q 011333           84 EPYSVEVLP-GGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTM  162 (488)
Q Consensus        84 ~P~GIaVd~-dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~  162 (488)
                      .-..+++.+ ++.++++-..++.|+.++..+   ..+..+.+..    ++         -.....+++.++|+++++-..
T Consensus       120 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~---~~~~~~~~~~----~~---------~~~v~~~~~~~~~~~l~~~~~  183 (383)
T 3ei3_B          120 AITGMKFNQFNTNQLFVSSIRGATTLRDFSG---SVIQVFAKTD----SW---------DYWYCCVDVSVSRQMLATGDS  183 (383)
T ss_dssp             BEEEEEEETTEEEEEEEEETTTEEEEEETTS---CEEEEEECCC----CS---------SCCEEEEEEETTTTEEEEEET
T ss_pred             ceeEEEeCCCCCCEEEEEeCCCEEEEEECCC---CceEEEeccC----CC---------CCCeEEEEECCCCCEEEEECC
Confidence            456788888 667777766778999999875   3444444321    11         123568999999987777777


Q ss_pred             CCEEEEEc-CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCe-EEEEECCCCeEEEEEcCC
Q 011333          163 NMAIRKIS-DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCS-LLVIDRGNRAIREIQLHF  230 (488)
Q Consensus       163 N~rIrkid-~gg-VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~-LYVaD~gN~rIrkI~~~g  230 (488)
                      .+.|+.++ .+. +.++.+..                 ....+|+ ..+++. ++++-...+.|+.+++..
T Consensus       184 d~~i~i~d~~~~~~~~~~~h~-----------------~~v~~~~-~~~~~~~~l~s~~~d~~i~iwd~~~  236 (383)
T 3ei3_B          184 TGRLLLLGLDGHEIFKEKLHK-----------------AKVTHAE-FNPRCDWLMATSSVDATVKLWDLRN  236 (383)
T ss_dssp             TSEEEEEETTSCEEEEEECSS-----------------SCEEEEE-ECSSCTTEEEEEETTSEEEEEEGGG
T ss_pred             CCCEEEEECCCCEEEEeccCC-----------------CcEEEEE-ECCCCCCEEEEEeCCCEEEEEeCCC
Confidence            88999999 444 44444321                 1346777 455565 777766778888888774

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=91.94  E-value=4.3  Score=43.58  Aligned_cols=112  Identities=6%  Similarity=0.036  Sum_probs=70.1

Q ss_pred             CceEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEECCC
Q 011333           84 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMN  163 (488)
Q Consensus        84 ~P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~N  163 (488)
                      ...+++++|+|.++++-..++.|+.++...+  ..+..+.+.                -.....++++++|+.+++=...
T Consensus        15 ~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~--~~~~~~~~~----------------~~~v~~~~~s~~~~~l~~~~~d   76 (814)
T 3mkq_A           15 RVKGIDFHPTEPWVLTTLYSGRVEIWNYETQ--VEVRSIQVT----------------ETPVRAGKFIARKNWIIVGSDD   76 (814)
T ss_dssp             CEEEEEECSSSSEEEEEETTSEEEEEETTTT--EEEEEEECC----------------SSCEEEEEEEGGGTEEEEEETT
T ss_pred             ceEEEEECCCCCEEEEEeCCCEEEEEECCCC--ceEEEEecC----------------CCcEEEEEEeCCCCEEEEEeCC
Confidence            4578899999997777667789999997642  123333322                1125678999999866655557


Q ss_pred             CEEEEEc--CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCC
Q 011333          164 MAIRKIS--DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFD  231 (488)
Q Consensus       164 ~rIrkid--~gg-VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g~  231 (488)
                      +.|+.++  .+. +.++.+..                 ....+++ +.+++..+++-..++.|+.++....
T Consensus        77 g~i~vw~~~~~~~~~~~~~~~-----------------~~v~~~~-~s~~~~~l~~~~~dg~i~vw~~~~~  129 (814)
T 3mkq_A           77 FRIRVFNYNTGEKVVDFEAHP-----------------DYIRSIA-VHPTKPYVLSGSDDLTVKLWNWENN  129 (814)
T ss_dssp             SEEEEEETTTCCEEEEEECCS-----------------SCEEEEE-ECSSSSEEEEEETTSEEEEEEGGGT
T ss_pred             CeEEEEECCCCcEEEEEecCC-----------------CCEEEEE-EeCCCCEEEEEcCCCEEEEEECCCC
Confidence            8899988  344 34443321                 1235666 4555554444445677777776643

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=91.83  E-value=9.7  Score=38.19  Aligned_cols=113  Identities=14%  Similarity=0.166  Sum_probs=65.1

Q ss_pred             CceEEEEccCCc-EEEEECC--CCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCc-EEEE
Q 011333           84 EPYSVEVLPGGE-LLILDSA--NSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-IYIA  159 (488)
Q Consensus        84 ~P~GIaVd~dG~-LYVaD~~--n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~-LYVA  159 (488)
                      ....++++|||. |+++...  ...|+.++..+   ++...+.+..                .....+++.++|. |+++
T Consensus       180 ~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~t---g~~~~l~~~~----------------~~~~~~~~spdg~~la~~  240 (415)
T 2hqs_A          180 PLMSPAWSPDGSKLAYVTFESGRSALVIQTLAN---GAVRQVASFP----------------RHNGAPAFSPDGSKLAFA  240 (415)
T ss_dssp             CEEEEEECTTSSEEEEEECTTSSCEEEEEETTT---CCEEEEECCS----------------SCEEEEEECTTSSEEEEE
T ss_pred             cceeeEEcCCCCEEEEEEecCCCcEEEEEECCC---CcEEEeecCC----------------CcccCEEEcCCCCEEEEE
Confidence            346788899987 4444432  35899999876   3444443320                1246789999997 5545


Q ss_pred             EC--CCCEEEEEc-C-CCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCe-EEEEEC--CCCeEEEEEcCCCc
Q 011333          160 DT--MNMAIRKIS-D-SGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCS-LLVIDR--GNRAIREIQLHFDD  232 (488)
Q Consensus       160 D~--~N~rIrkid-~-ggVttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~-LYVaD~--gN~rIrkI~~~g~~  232 (488)
                      -.  ++..|+.++ . +.+..+.+..                 ....++++ .++|+ |+++..  +..+|+.+++.+..
T Consensus       241 ~~~~g~~~i~~~d~~~~~~~~l~~~~-----------------~~~~~~~~-spdg~~l~~~s~~~g~~~i~~~d~~~~~  302 (415)
T 2hqs_A          241 LSKTGSLNLYVMDLASGQIRQVTDGR-----------------SNNTEPTW-FPDSQNLAFTSDQAGRPQVYKVNINGGA  302 (415)
T ss_dssp             ECTTSSCEEEEEETTTCCEEECCCCS-----------------SCEEEEEE-CTTSSEEEEEECTTSSCEEEEEETTSSC
T ss_pred             EecCCCceEEEEECCCCCEEeCcCCC-----------------CcccceEE-CCCCCEEEEEECCCCCcEEEEEECCCCC
Confidence            33  256788888 3 3344433211                 12345664 45554 554442  23478888877644


Q ss_pred             e
Q 011333          233 C  233 (488)
Q Consensus       233 ~  233 (488)
                      +
T Consensus       303 ~  303 (415)
T 2hqs_A          303 P  303 (415)
T ss_dssp             C
T ss_pred             E
Confidence            3

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=91.78  E-value=0.96  Score=44.48  Aligned_cols=115  Identities=9%  Similarity=-0.008  Sum_probs=70.8

Q ss_pred             ceEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCc-EEEEECCC
Q 011333           85 PYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-IYIADTMN  163 (488)
Q Consensus        85 P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~-LYVAD~~N  163 (488)
                      -..|++.++|.++++-...+.|+.++...+.  .+..+-+.                -...+.|++.+++. ++++-..+
T Consensus       142 V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~--~~~~~~~h----------------~~~v~~v~~s~~~~~~~~s~~~d  203 (357)
T 4g56_B          142 VKTLSVFSDGTQAVSGGKDFSVKVWDLSQKA--VLKSYNAH----------------SSEVNCVAACPGKDTIFLSCGED  203 (357)
T ss_dssp             EEEEEECSSSSEEEEEETTSCEEEEETTTTE--EEEEECCC----------------SSCEEEEEECTTCSSCEEEEETT
T ss_pred             EEEEEECCCCCEEEEEeCCCeEEEEECCCCc--EEEEEcCC----------------CCCEEEEEEccCCCceeeeeccC
Confidence            4678899999988877777899999987521  12222221                12346788888774 66666667


Q ss_pred             CEEEEEc--CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCc
Q 011333          164 MAIRKIS--DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDD  232 (488)
Q Consensus       164 ~rIrkid--~gg-VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g~~  232 (488)
                      +.|+.++  .+. +..+....               .-..+..|++.+..+.++++-..++.|+.+++....
T Consensus       204 g~v~~wd~~~~~~~~~~~~~~---------------~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~  260 (357)
T 4g56_B          204 GRILLWDTRKPKPATRIDFCA---------------SDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPD  260 (357)
T ss_dssp             SCEEECCTTSSSCBCBCCCTT---------------CCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGG
T ss_pred             CceEEEECCCCceeeeeeecc---------------ccccccchhhhhcccceEEEeecccceeEEECCCCc
Confidence            8888887  222 21111100               011346777555556777766667888888876543

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=91.66  E-value=2.5  Score=42.33  Aligned_cols=117  Identities=13%  Similarity=0.141  Sum_probs=73.1

Q ss_pred             ceEEEEcc-CCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcC-CCcEEEEECC
Q 011333           85 PYSVEVLP-GGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDD-RGNIYIADTM  162 (488)
Q Consensus        85 P~GIaVd~-dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~-dG~LYVAD~~  162 (488)
                      -+.|+++| +++++++-..++.|+.++.....  ....+..     .|+         -..-++|++.+ +++++++=..
T Consensus       122 V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~--~~~~~~~-----~gH---------~~~V~~l~f~p~~~~~l~s~s~  185 (435)
T 4e54_B          122 ATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKD--KPTFIKG-----IGA---------GGSITGLKFNPLNTNQFYASSM  185 (435)
T ss_dssp             EEEEEECSSCTTCEEEEETTSCEEEECSSCCS--CCEEECC-----CSS---------SCCCCEEEECSSCTTEEEEECS
T ss_pred             EEEEEEeCCCCCEEEEEeCCCEEEEEECCCCC--ceeEEEc-----cCC---------CCCEEEEEEeCCCCCEEEEEeC
Confidence            46788888 56677776667899999876432  1122211     122         11246789986 6788887777


Q ss_pred             CCEEEEEc-CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCc
Q 011333          163 NMAIRKIS-DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDD  232 (488)
Q Consensus       163 N~rIrkid-~gg-VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g~~  232 (488)
                      .+.|+.+| .++ +.++......              -.....++ +.+++.++++-...+.|+.+++.+..
T Consensus       186 D~~v~iwd~~~~~~~~~~~~~~~--------------~~~~~~~~-~~~~~~~l~~g~~dg~i~~wd~~~~~  242 (435)
T 4e54_B          186 EGTTRLQDFKGNILRVFASSDTI--------------NIWFCSLD-VSASSRMVVTGDNVGNVILLNMDGKE  242 (435)
T ss_dssp             SSCEEEEETTSCEEEEEECCSSC--------------SCCCCCEE-EETTTTEEEEECSSSBEEEEESSSCB
T ss_pred             CCEEEEeeccCCceeEEeccCCC--------------CccEEEEE-ECCCCCEEEEEeCCCcEeeeccCcce
Confidence            78899998 444 4444432110              11234566 45677777777778889998887643

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=91.66  E-value=3  Score=40.68  Aligned_cols=110  Identities=14%  Similarity=0.148  Sum_probs=70.4

Q ss_pred             EEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEECCCCEEEE
Q 011333           89 EVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNMAIRK  168 (488)
Q Consensus        89 aVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~N~rIrk  168 (488)
                      ++.++|.++++-..++.|+.++...   +.......      ++         -.....|++.++|+++++=...+.|+.
T Consensus       104 ~~~~~~~~l~~~~~dg~i~iwd~~~---~~~~~~~~------~h---------~~~v~~~~~~~~~~~l~s~s~d~~i~i  165 (420)
T 3vl1_A          104 TAKLQMRRFILGTTEGDIKVLDSNF---NLQREIDQ------AH---------VSEITKLKFFPSGEALISSSQDMQLKI  165 (420)
T ss_dssp             EECSSSCEEEEEETTSCEEEECTTS---CEEEEETT------SS---------SSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             EEecCCCEEEEEECCCCEEEEeCCC---cceeeecc------cc---------cCccEEEEECCCCCEEEEEeCCCeEEE
Confidence            4567888777766778899998775   22222211      11         223568999999987777667889999


Q ss_pred             Ec--CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCceE
Q 011333          169 IS--DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCA  234 (488)
Q Consensus       169 id--~gg-VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g~~~~  234 (488)
                      ++  .+. +.++.+..                 ....++++ .+++.++++-...+.|+.+++....+.
T Consensus       166 wd~~~~~~~~~~~~h~-----------------~~v~~~~~-~~~~~~l~s~~~d~~v~iwd~~~~~~~  216 (420)
T 3vl1_A          166 WSVKDGSNPRTLIGHR-----------------ATVTDIAI-IDRGRNVLSASLDGTIRLWECGTGTTI  216 (420)
T ss_dssp             EETTTCCCCEEEECCS-----------------SCEEEEEE-ETTTTEEEEEETTSCEEEEETTTTEEE
T ss_pred             EeCCCCcCceEEcCCC-----------------CcEEEEEE-cCCCCEEEEEcCCCcEEEeECCCCcee
Confidence            98  333 45554321                 13466774 455666666666788888887754443

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=91.53  E-value=3.9  Score=40.18  Aligned_cols=116  Identities=7%  Similarity=-0.046  Sum_probs=69.9

Q ss_pred             eEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEECCCCE
Q 011333           86 YSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNMA  165 (488)
Q Consensus        86 ~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~N~r  165 (488)
                      ..+++.+++.|.++. .++.|+.++.+.+.  .+.+..-.   ..|+         -..-+.|++.++|+++++=...+.
T Consensus        86 ~~~~~s~d~~l~~~s-~dg~v~lWd~~~~~--~~~~~~~~---~~~H---------~~~V~~v~~spdg~~l~sgs~d~~  150 (344)
T 4gqb_B           86 ADLTWVGERGILVAS-DSGAVELWELDENE--TLIVSKFC---KYEH---------DDIVSTVSVLSSGTQAVSGSKDIC  150 (344)
T ss_dssp             EEEEEETTTEEEEEE-TTSEEEEEEECTTS--SCEEEEEE---EECC---------SSCEEEEEECTTSSEEEEEETTSC
T ss_pred             EEEEEeCCCeEEEEE-CCCEEEEEeccCCC--ceeEeecc---ccCC---------CCCEEEEEECCCCCEEEEEeCCCe
Confidence            578888888776654 46789998876432  11111100   0112         112467999999998887667788


Q ss_pred             EEEEc-C-CC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCce
Q 011333          166 IRKIS-D-SG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDC  233 (488)
Q Consensus       166 Irkid-~-gg-VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g~~~  233 (488)
                      |+.++ . +. +.++.+-.                 ....++++......++++-...+.|+.++.....+
T Consensus       151 i~iwd~~~~~~~~~~~~h~-----------------~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~  204 (344)
T 4gqb_B          151 IKVWDLAQQVVLSSYRAHA-----------------AQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKP  204 (344)
T ss_dssp             EEEEETTTTEEEEEECCCS-----------------SCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSC
T ss_pred             EEEEECCCCcEEEEEcCcC-----------------CceEEEEecCCCCCceeeeccccccccccccccce
Confidence            99998 3 33 34443311                 12356664343446777766678888888765443

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=91.46  E-value=4.1  Score=38.33  Aligned_cols=114  Identities=11%  Similarity=0.069  Sum_probs=72.3

Q ss_pred             CceEEEEccC----CcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcC-CCcEEE
Q 011333           84 EPYSVEVLPG----GELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDD-RGNIYI  158 (488)
Q Consensus        84 ~P~GIaVd~d----G~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~-dG~LYV  158 (488)
                      .-..+++.++    |.++++-..++.|+.++.....  .+..+.+.                -.....|++.+ ++++++
T Consensus        71 ~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~--~~~~~~~~----------------~~~i~~~~~~~~~~~~l~  132 (366)
T 3k26_A           71 NFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQ--CIKHYVGH----------------GNAINELKFHPRDPNLLL  132 (366)
T ss_dssp             CEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCC--EEEEEESC----------------CSCEEEEEECSSCTTEEE
T ss_pred             cEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhce--EeeeecCC----------------CCcEEEEEECCCCCCEEE
Confidence            3467788777    6677776677899999987421  23333222                12356789998 888777


Q ss_pred             EECCCCEEEEEc--CCCc-EEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCC
Q 011333          159 ADTMNMAIRKIS--DSGV-TTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHF  230 (488)
Q Consensus       159 AD~~N~rIrkid--~ggV-ttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g  230 (488)
                      +=...+.|+.++  .+.. ..+.... +             .-....+++ ..+++.++++-..++.|+.+++..
T Consensus       133 s~~~dg~i~iwd~~~~~~~~~~~~~~-~-------------~~~~v~~~~-~~~~~~~l~~~~~dg~i~i~d~~~  192 (366)
T 3k26_A          133 SVSKDHALRLWNIQTDTLVAIFGGVE-G-------------HRDEVLSAD-YDLLGEKIMSCGMDHSLKLWRINS  192 (366)
T ss_dssp             EEETTSCEEEEETTTTEEEEEECSTT-S-------------CSSCEEEEE-ECTTSSEEEEEETTSCEEEEESCS
T ss_pred             EEeCCCeEEEEEeecCeEEEEecccc-c-------------ccCceeEEE-ECCCCCEEEEecCCCCEEEEECCC
Confidence            766678899888  3333 3331100 0             112456787 566777666666678999998774

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=91.43  E-value=4  Score=39.52  Aligned_cols=113  Identities=14%  Similarity=0.095  Sum_probs=68.5

Q ss_pred             ceEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEECCCC
Q 011333           85 PYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNM  164 (488)
Q Consensus        85 P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~N~  164 (488)
                      -..|+++++|.++++-...+.|+.++.+......+.++.|.                -..-..|++.++|+++++=...+
T Consensus        64 v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h----------------~~~v~~v~~sp~~~~l~s~s~D~  127 (345)
T 3fm0_A           64 VRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGH----------------ENEVKSVAWAPSGNLLATCSRDK  127 (345)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCC----------------SSCEEEEEECTTSSEEEEEETTS
T ss_pred             EEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCC----------------CCCceEEEEeCCCCEEEEEECCC
Confidence            46788999999877766677787777653211112223221                12346799999999888766677


Q ss_pred             EEEEEc--CCC-cE---EEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCC
Q 011333          165 AIRKIS--DSG-VT---TIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFD  231 (488)
Q Consensus       165 rIrkid--~gg-Vt---tIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g~  231 (488)
                      .|+.++  .+. ..   ++.+.                 -.....++ ..+++.++++-...+.|+.++....
T Consensus       128 ~v~iwd~~~~~~~~~~~~~~~h-----------------~~~v~~~~-~~p~~~~l~s~s~d~~i~~w~~~~~  182 (345)
T 3fm0_A          128 SVWVWEVDEEDEYECVSVLNSH-----------------TQDVKHVV-WHPSQELLASASYDDTVKLYREEED  182 (345)
T ss_dssp             CEEEEEECTTSCEEEEEEECCC-----------------CSCEEEEE-ECSSSSCEEEEETTSCEEEEEEETT
T ss_pred             eEEEEECCCCCCeEEEEEecCc-----------------CCCeEEEE-ECCCCCEEEEEeCCCcEEEEEecCC
Confidence            888877  222 22   22111                 01235666 4566766666666777887776543

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=91.37  E-value=3.2  Score=39.73  Aligned_cols=116  Identities=14%  Similarity=0.112  Sum_probs=69.0

Q ss_pred             CceEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEECCC
Q 011333           84 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMN  163 (488)
Q Consensus        84 ~P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~N  163 (488)
                      .-..++++++|.++++-...+.|+.++.....  .+..+.+.                 .....+++.++|.++++-. .
T Consensus       198 ~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~-----------------~~v~~~~~sp~~~~la~~~-~  257 (319)
T 3frx_A          198 NINTLTASPDGTLIASAGKDGEIMLWNLAAKK--AMYTLSAQ-----------------DEVFSLAFSPNRYWLAAAT-A  257 (319)
T ss_dssp             CEEEEEECTTSSEEEEEETTCEEEEEETTTTE--EEEEEECC-----------------SCEEEEEECSSSSEEEEEE-T
T ss_pred             cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc--EEEEecCC-----------------CcEEEEEEcCCCCEEEEEc-C
Confidence            34678888999988877777899999987521  22222211                 1246799999997655543 3


Q ss_pred             CEEEEEc-CCC--cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcC
Q 011333          164 MAIRKIS-DSG--VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLH  229 (488)
Q Consensus       164 ~rIrkid-~gg--VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~  229 (488)
                      ..|+.++ +..  +..+.....+.         ....-....+++ ..++|..+++-...+.|+.++..
T Consensus       258 ~~i~v~~~~~~~~~~~~~~~~~~~---------~~~~~~~v~~~~-~spdg~~l~sg~~Dg~i~vWd~~  316 (319)
T 3frx_A          258 TGIKVFSLDPQYLVDDLRPEFAGY---------SKAAEPHAVSLA-WSADGQTLFAGYTDNVIRVWQVM  316 (319)
T ss_dssp             TEEEEEEETTEEEEEEECCCCTTC---------CGGGCCCEEEEE-ECTTSSEEEEEETTSCEEEEEEE
T ss_pred             CCcEEEEeCcCeeeeccCcccccc---------ccCcCcceeEEE-ECCCCCEEEEeecCceEEEEEEe
Confidence            4566666 332  23332211100         000112345788 57788888877778888888753

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=91.15  E-value=3.5  Score=38.05  Aligned_cols=112  Identities=9%  Similarity=-0.012  Sum_probs=66.4

Q ss_pred             ceEEEEccCCcEEEEECCCCeEEEEeCCCCcc--cccEEEecCCCCccccCCCcccccccCCcceEEEcC--CCcEEEEE
Q 011333           85 PYSVEVLPGGELLILDSANSNLYRISSSLSLY--SRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDD--RGNIYIAD  160 (488)
Q Consensus        85 P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~--g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~--dG~LYVAD  160 (488)
                      -..|+++++|.++++-..++.|+.++......  ..+..+.+.                -.....|++.+  +++++++=
T Consensus        14 v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~----------------~~~v~~~~~~~~~d~~~l~s~   77 (351)
T 3f3f_A           14 VHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAH----------------DSSIVAIDWASPEYGRIIASA   77 (351)
T ss_dssp             EEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECC----------------SSCEEEEEECCGGGCSEEEEE
T ss_pred             eeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccC----------------CCcEEEEEEcCCCCCCEEEEE
Confidence            46788899999777776778899988764210  011122221                12356788887  57776665


Q ss_pred             CCCCEEEEEc-CCC-----------cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCC--CeEEEEECCCCeEEEE
Q 011333          161 TMNMAIRKIS-DSG-----------VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSS--CSLLVIDRGNRAIREI  226 (488)
Q Consensus       161 ~~N~rIrkid-~gg-----------VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~--G~LYVaD~gN~rIrkI  226 (488)
                      ...+.|+.++ ..+           +.++.+.                 -....+++ ..++  +.++++-..++.|+.+
T Consensus        78 ~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~-----------------~~~v~~~~-~~~~~~~~~l~~~~~dg~v~iw  139 (351)
T 3f3f_A           78 SYDKTVKLWEEDPDQEECSGRRWNKLCTLNDS-----------------KGSLYSVK-FAPAHLGLKLACLGNDGILRLY  139 (351)
T ss_dssp             ETTSCEEEEEECTTSCTTSSCSEEEEEEECCC-----------------SSCEEEEE-ECCGGGCSEEEEEETTCEEEEE
T ss_pred             cCCCeEEEEecCCCcccccccCcceeeeeccc-----------------CCceeEEE-EcCCCCCcEEEEecCCCcEEEe
Confidence            5677788777 221           2222211                 11245677 4555  6666665667888888


Q ss_pred             EcCC
Q 011333          227 QLHF  230 (488)
Q Consensus       227 ~~~g  230 (488)
                      ++..
T Consensus       140 d~~~  143 (351)
T 3f3f_A          140 DALE  143 (351)
T ss_dssp             ECSS
T ss_pred             cCCC
Confidence            8654

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=91.12  E-value=1.6  Score=43.06  Aligned_cols=69  Identities=14%  Similarity=0.180  Sum_probs=50.2

Q ss_pred             cceEEEcCCCcEEEEECCCCEEEEEc--CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCC
Q 011333          145 PKGLTVDDRGNIYIADTMNMAIRKIS--DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNR  221 (488)
Q Consensus       145 P~GIAvD~dG~LYVAD~~N~rIrkid--~gg-VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~  221 (488)
                      -+.|++.++|.++++=...+.|+.++  ++. +.++..+-                -...++|+ +.++|.++++-+..+
T Consensus       272 V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH----------------~~~V~~v~-fSpdg~~laS~S~D~  334 (365)
T 4h5i_A          272 ITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAH----------------SFAITEVT-ISPDSTYVASVSAAN  334 (365)
T ss_dssp             EEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSS----------------SSCEEEEE-ECTTSCEEEEEETTS
T ss_pred             eEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcc----------------cCCEEEEE-ECCCCCEEEEEeCCC
Confidence            46789999999887766678899998  333 34443221                12347888 578899999988889


Q ss_pred             eEEEEEcCC
Q 011333          222 AIREIQLHF  230 (488)
Q Consensus       222 rIrkI~~~g  230 (488)
                      .|+.+++..
T Consensus       335 tvrvw~ip~  343 (365)
T 4h5i_A          335 TIHIIKLPL  343 (365)
T ss_dssp             EEEEEECCT
T ss_pred             eEEEEEcCC
Confidence            999999754

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=91.11  E-value=2.2  Score=42.87  Aligned_cols=115  Identities=13%  Similarity=0.138  Sum_probs=69.3

Q ss_pred             CceEEEEccCCcEEEEECCCCeEEEEeCCCCcccc--cEEEecCCCCccccCCCcccccccCCcceEEEcCC---CcEEE
Q 011333           84 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSR--PKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDR---GNIYI  158 (488)
Q Consensus        84 ~P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~--i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~d---G~LYV  158 (488)
                      .+..++++++|.++++-...+.|+.++........  ...+.       ++         ......|++.++   |.+++
T Consensus       151 ~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~-------~h---------~~~v~~~~~sp~~~~~~~l~  214 (450)
T 2vdu_B          151 RPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPIL-------GH---------VSMLTDVHLIKDSDGHQFII  214 (450)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSE-------EC---------SSCEEEEEEEECTTSCEEEE
T ss_pred             CceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeee-------cc---------cCceEEEEEcCCCCCCcEEE
Confidence            56789999998855554457789999876421110  00111       11         234678999998   86665


Q ss_pred             EECCCCEEEEEc--CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCc
Q 011333          159 ADTMNMAIRKIS--DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDD  232 (488)
Q Consensus       159 AD~~N~rIrkid--~gg-VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g~~  232 (488)
                      +=...+.|+.++  .+. +.++..+.                -....++++ . ++.++++-...+.|+.+++....
T Consensus       215 s~~~d~~i~vwd~~~~~~~~~~~~~h----------------~~~v~~~~~-s-d~~~l~s~~~d~~v~vwd~~~~~  273 (450)
T 2vdu_B          215 TSDRDEHIKISHYPQCFIVDKWLFGH----------------KHFVSSICC-G-KDYLLLSAGGDDKIFAWDWKTGK  273 (450)
T ss_dssp             EEETTSCEEEEEESCTTCEEEECCCC----------------SSCEEEEEE-C-STTEEEEEESSSEEEEEETTTCC
T ss_pred             EEcCCCcEEEEECCCCceeeeeecCC----------------CCceEEEEE-C-CCCEEEEEeCCCeEEEEECCCCc
Confidence            554567888888  343 33333111                123467774 4 66666666677888888876543

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=91.07  E-value=3.2  Score=41.62  Aligned_cols=114  Identities=11%  Similarity=0.055  Sum_probs=75.3

Q ss_pred             CceEEEEcc-CCcEEEEECCCCeEEEEeCCCCc-ccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCc-EEEEE
Q 011333           84 EPYSVEVLP-GGELLILDSANSNLYRISSSLSL-YSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-IYIAD  160 (488)
Q Consensus        84 ~P~GIaVd~-dG~LYVaD~~n~rI~kid~~g~~-~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~-LYVAD  160 (488)
                      ....|++.+ ++.++++....+.|+.++..... ...+..+.+.                -..++.|++.+++. ++++-
T Consensus       233 ~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~----------------~~~v~~i~~~p~~~~~l~tg  296 (430)
T 2xyi_A          233 VVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAH----------------TAEVNCLSFNPYSEFILATG  296 (430)
T ss_dssp             CEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECC----------------SSCEEEEEECSSCTTEEEEE
T ss_pred             CEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecC----------------CCCeEEEEeCCCCCCEEEEE
Confidence            356788888 67788888888999999987421 0112222111                12367899999886 77776


Q ss_pred             CCCCEEEEEc-CC-C--cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCC
Q 011333          161 TMNMAIRKIS-DS-G--VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHF  230 (488)
Q Consensus       161 ~~N~rIrkid-~g-g--VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g  230 (488)
                      ...+.|+.++ .. +  +.++.+..                 ....+|++.+....++++-...++|+.+++..
T Consensus       297 ~~dg~v~vwd~~~~~~~~~~~~~h~-----------------~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~  353 (430)
T 2xyi_A          297 SADKTVALWDLRNLKLKLHSFESHK-----------------DEIFQVQWSPHNETILASSGTDRRLHVWDLSK  353 (430)
T ss_dssp             ETTSEEEEEETTCTTSCSEEEECCS-----------------SCEEEEEECSSCTTEEEEEETTSCCEEEEGGG
T ss_pred             eCCCeEEEEeCCCCCCCeEEeecCC-----------------CCEEEEEECCCCCCEEEEEeCCCcEEEEeCCC
Confidence            6788999998 32 2  45554321                 13467774443336788888888999998875

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=90.70  E-value=4.5  Score=39.90  Aligned_cols=116  Identities=16%  Similarity=0.184  Sum_probs=67.3

Q ss_pred             ceEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcC-CCcEEEEECCC
Q 011333           85 PYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDD-RGNIYIADTMN  163 (488)
Q Consensus        85 P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~-dG~LYVAD~~N  163 (488)
                      -..+++.++|..+++-...+.|+.++...+   ........                -.....+++.+ +|+++++-...
T Consensus       168 v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~---~~~~~~~~----------------~~~v~~~~~~~~~~~~l~~~s~d  228 (393)
T 1erj_A          168 IYSLDYFPSGDKLVSGSGDRTVRIWDLRTG---QCSLTLSI----------------EDGVTTVAVSPGDGKYIAAGSLD  228 (393)
T ss_dssp             EEEEEECTTSSEEEEEETTSEEEEEETTTT---EEEEEEEC----------------SSCEEEEEECSTTCCEEEEEETT
T ss_pred             EEEEEEcCCCCEEEEecCCCcEEEEECCCC---eeEEEEEc----------------CCCcEEEEEECCCCCEEEEEcCC
Confidence            356777777776666666677777776642   22221111                11245688887 78888777778


Q ss_pred             CEEEEEc--CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCC
Q 011333          164 MAIRKIS--DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHF  230 (488)
Q Consensus       164 ~rIrkid--~gg-VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g  230 (488)
                      +.|+.++  .+. +..+....... .         ..-....+|+ +.++|.++++-...+.|+.+++..
T Consensus       229 ~~v~iwd~~~~~~~~~~~~~~~~~-~---------~h~~~v~~v~-~~~~g~~l~s~s~d~~v~~wd~~~  287 (393)
T 1erj_A          229 RAVRVWDSETGFLVERLDSENESG-T---------GHKDSVYSVV-FTRDGQSVVSGSLDRSVKLWNLQN  287 (393)
T ss_dssp             SCEEEEETTTCCEEEEEC-------C---------CCSSCEEEEE-ECTTSSEEEEEETTSEEEEEEC--
T ss_pred             CcEEEEECCCCcEEEeecccccCC-C---------CCCCCEEEEE-ECCCCCEEEEEeCCCEEEEEECCC
Confidence            8899988  333 23331110000 0         0112346777 567777777777788898888764

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=90.65  E-value=2.3  Score=40.52  Aligned_cols=113  Identities=10%  Similarity=-0.026  Sum_probs=68.2

Q ss_pred             CceEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEECCC
Q 011333           84 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMN  163 (488)
Q Consensus        84 ~P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~N  163 (488)
                      ....+++.++|.++++-..++.|+.++....   ......-.    .++         -.....+++.++|+++++=..+
T Consensus        54 ~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~---~~~~~~~~----~~~---------~~~v~~~~~~~~~~~l~~~~~d  117 (372)
T 1k8k_C           54 QVTGVDWAPDSNRIVTCGTDRNAYVWTLKGR---TWKPTLVI----LRI---------NRAARCVRWAPNEKKFAVGSGS  117 (372)
T ss_dssp             CEEEEEEETTTTEEEEEETTSCEEEEEEETT---EEEEEEEC----CCC---------SSCEEEEEECTTSSEEEEEETT
T ss_pred             cccEEEEeCCCCEEEEEcCCCeEEEEECCCC---eeeeeEEe----ecC---------CCceeEEEECCCCCEEEEEeCC
Confidence            4568889999987777666788888887642   21111110    000         1236789999999866665556


Q ss_pred             CEEEEEc--CCC----cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcC
Q 011333          164 MAIRKIS--DSG----VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLH  229 (488)
Q Consensus       164 ~rIrkid--~gg----VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~  229 (488)
                      +.|+.++  .+.    ...+...                .-....+++ +.+++.++++-...+.|+.++..
T Consensus       118 ~~v~i~d~~~~~~~~~~~~~~~~----------------~~~~i~~~~-~~~~~~~l~~~~~dg~i~~~d~~  172 (372)
T 1k8k_C          118 RVISICYFEQENDWWVCKHIKKP----------------IRSTVLSLD-WHPNSVLLAAGSCDFKCRIFSAY  172 (372)
T ss_dssp             SSEEEEEEETTTTEEEEEEECTT----------------CCSCEEEEE-ECTTSSEEEEEETTSCEEEEECC
T ss_pred             CEEEEEEecCCCcceeeeeeecc----------------cCCCeeEEE-EcCCCCEEEEEcCCCCEEEEEcc
Confidence            7777766  333    1222111                012346777 56677766666667888888853

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=90.55  E-value=10  Score=37.04  Aligned_cols=142  Identities=11%  Similarity=0.109  Sum_probs=73.9

Q ss_pred             CceEEEEccCC-cEEEEECCCCeEEEEeCCCCcc-c-ccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEE
Q 011333           84 EPYSVEVLPGG-ELLILDSANSNLYRISSSLSLY-S-RPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIAD  160 (488)
Q Consensus        84 ~P~GIaVd~dG-~LYVaD~~n~rI~kid~~g~~~-g-~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD  160 (488)
                      ....++++++| .++++-...+.|+.++...... . .+.++.+.. .. .  ...........-..|+++++|.++++-
T Consensus       228 ~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~-~--~~~~~~~~~~~v~~~~~s~~g~~l~~~  303 (447)
T 3dw8_B          228 VITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPE-DP-S--NRSFFSEIISSISDVKFSHSGRYMMTR  303 (447)
T ss_dssp             CEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC---------CCHHHHHTTCEEEEEECTTSSEEEEE
T ss_pred             ceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCC-Cc-c--ccccccccCceEEEEEECCCCCEEEEe
Confidence            35788999998 7888777788999999875220 0 023443321 00 0  000000001245689999999877765


Q ss_pred             CCCCEEEEEc-C--CC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCce
Q 011333          161 TMNMAIRKIS-D--SG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDC  233 (488)
Q Consensus       161 ~~N~rIrkid-~--gg-VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g~~~  233 (488)
                      .. +.|+.++ .  +. +.++.+..... .. .........+.....++ +.+++..+++-..++.|+.++.....+
T Consensus       304 ~~-~~v~iwd~~~~~~~~~~~~~~~~~~-~~-l~~~~~~~~i~~~~~~~-~s~~~~~l~s~s~dg~v~iwd~~~~~~  376 (447)
T 3dw8_B          304 DY-LSVKVWDLNMENRPVETYQVHEYLR-SK-LCSLYENDCIFDKFECC-WNGSDSVVMTGSYNNFFRMFDRNTKRD  376 (447)
T ss_dssp             ES-SEEEEEETTCCSSCSCCEESCGGGT-TT-HHHHHHTSGGGCCCCEE-ECTTSSEEEEECSTTEEEEEETTTCCE
T ss_pred             eC-CeEEEEeCCCCccccceeecccccc-cc-ccccccccccccceEEE-ECCCCCEEEEeccCCEEEEEEcCCCcc
Confidence            55 8999998 2  33 44444321110 00 00000000111123466 455666556666677777777665433

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=90.52  E-value=2.3  Score=41.24  Aligned_cols=113  Identities=16%  Similarity=0.157  Sum_probs=69.1

Q ss_pred             ceEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEECCCC
Q 011333           85 PYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNM  164 (488)
Q Consensus        85 P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~N~  164 (488)
                      -..|+++|+|.++++-...+.|+.++..+... .......     .|+         -..-..|++.++|+++++=...+
T Consensus        19 v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~-~~~~~~~-----~~h---------~~~v~~~~~sp~g~~l~s~s~D~   83 (345)
T 3fm0_A           19 CWFLAWNPAGTLLASCGGDRRIRIWGTEGDSW-ICKSVLS-----EGH---------QRTVRKVAWSPCGNYLASASFDA   83 (345)
T ss_dssp             EEEEEECTTSSCEEEEETTSCEEEEEEETTEE-EEEEEEC-----SSC---------SSCEEEEEECTTSSEEEEEETTS
T ss_pred             EEEEEECCCCCEEEEEcCCCeEEEEEcCCCcc-eeeeeec-----ccc---------CCcEEEEEECCCCCEEEEEECCC
Confidence            35788999999888877778898888764210 0111111     111         12246799999998777666667


Q ss_pred             EEEEEc--CCC---cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCC
Q 011333          165 AIRKIS--DSG---VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHF  230 (488)
Q Consensus       165 rIrkid--~gg---VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g  230 (488)
                      .|+.++  .+.   +.++.+..                 ....+|+ ..++++++++-...+.|+.+++..
T Consensus        84 ~v~iw~~~~~~~~~~~~~~~h~-----------------~~v~~v~-~sp~~~~l~s~s~D~~v~iwd~~~  136 (345)
T 3fm0_A           84 TTCIWKKNQDDFECVTTLEGHE-----------------NEVKSVA-WAPSGNLLATCSRDKSVWVWEVDE  136 (345)
T ss_dssp             CEEEEEECCC-EEEEEEECCCS-----------------SCEEEEE-ECTTSSEEEEEETTSCEEEEEECT
T ss_pred             cEEEEEccCCCeEEEEEccCCC-----------------CCceEEE-EeCCCCEEEEEECCCeEEEEECCC
Confidence            777766  333   22332211                 1235677 466777777766677888887654

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=90.43  E-value=6.7  Score=36.00  Aligned_cols=109  Identities=12%  Similarity=0.064  Sum_probs=67.0

Q ss_pred             CceEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEECCC
Q 011333           84 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMN  163 (488)
Q Consensus        84 ~P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~N  163 (488)
                      ....+++.++|.|+ +-..++.|+.++.....  .+..+.+.                -.....|++.++|.|+.+. ..
T Consensus       186 ~i~~~~~~~~~~~~-~~~~dg~i~i~d~~~~~--~~~~~~~~----------------~~~i~~~~~~~~~~l~~~~-~d  245 (313)
T 3odt_A          186 VVRHLAVVDDGHFI-SCSNDGLIKLVDMHTGD--VLRTYEGH----------------ESFVYCIKLLPNGDIVSCG-ED  245 (313)
T ss_dssp             CEEEEEEEETTEEE-EEETTSEEEEEETTTCC--EEEEEECC----------------SSCEEEEEECTTSCEEEEE-TT
T ss_pred             cEEEEEEcCCCeEE-EccCCCeEEEEECCchh--hhhhhhcC----------------CceEEEEEEecCCCEEEEe-cC
Confidence            45677788888844 44456788888876421  22233221                1235689999999766655 47


Q ss_pred             CEEEEEc--CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCC
Q 011333          164 MAIRKIS--DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFD  231 (488)
Q Consensus       164 ~rIrkid--~gg-VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g~  231 (488)
                      +.|+.++  .+. +.++.+..                 ....+++ ..+++.++++ ...+.|+.+++...
T Consensus       246 g~v~iwd~~~~~~~~~~~~~~-----------------~~i~~~~-~~~~~~~~~~-~~dg~i~iw~~~~~  297 (313)
T 3odt_A          246 RTVRIWSKENGSLKQVITLPA-----------------ISIWSVD-CMSNGDIIVG-SSDNLVRIFSQEKS  297 (313)
T ss_dssp             SEEEEECTTTCCEEEEEECSS-----------------SCEEEEE-ECTTSCEEEE-ETTSCEEEEESCGG
T ss_pred             CEEEEEECCCCceeEEEeccC-----------------ceEEEEE-EccCCCEEEE-eCCCcEEEEeCCCC
Confidence            8899998  344 34443211                 1245777 5667776554 45678888887653

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=90.34  E-value=2.4  Score=41.19  Aligned_cols=114  Identities=9%  Similarity=0.045  Sum_probs=70.0

Q ss_pred             CceEEEEccCC-cEEEEECCCC---eEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcC-CCcEEE
Q 011333           84 EPYSVEVLPGG-ELLILDSANS---NLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDD-RGNIYI  158 (488)
Q Consensus        84 ~P~GIaVd~dG-~LYVaD~~n~---rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~-dG~LYV  158 (488)
                      ....++++++| .++++-...+   .|+.++..... ..+..+.      .++         -.....|++.+ ++++++
T Consensus       216 ~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~-~~~~~~~------~~~---------~~~v~~~~~s~~~~~~l~  279 (416)
T 2pm9_A          216 QLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNAN-TPLQTLN------QGH---------QKGILSLDWCHQDEHLLL  279 (416)
T ss_dssp             CEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTT-SCSBCCC------SCC---------SSCEEEEEECSSCSSCEE
T ss_pred             ceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCC-CCcEEee------cCc---------cCceeEEEeCCCCCCeEE
Confidence            45677888876 4555554454   77777766321 0111111      011         12357899998 888777


Q ss_pred             EECCCCEEEEEc--CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCC-eEEEEECCCCeEEEEEcCCC
Q 011333          159 ADTMNMAIRKIS--DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSC-SLLVIDRGNRAIREIQLHFD  231 (488)
Q Consensus       159 AD~~N~rIrkid--~gg-VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G-~LYVaD~gN~rIrkI~~~g~  231 (488)
                      +-...+.|+.++  .+. +.++.+..                 ....+++ ..+++ .++++-...+.|+.+++...
T Consensus       280 s~~~dg~v~~wd~~~~~~~~~~~~~~-----------------~~v~~~~-~s~~~~~~l~s~~~d~~i~iw~~~~~  338 (416)
T 2pm9_A          280 SSGRDNTVLLWNPESAEQLSQFPARG-----------------NWCFKTK-FAPEAPDLFACASFDNKIEVQTLQNL  338 (416)
T ss_dssp             EEESSSEEEEECSSSCCEEEEEECSS-----------------SCCCCEE-ECTTCTTEEEECCSSSEEEEEESCCC
T ss_pred             EEeCCCCEEEeeCCCCccceeecCCC-----------------CceEEEE-ECCCCCCEEEEEecCCcEEEEEccCC
Confidence            766788999999  333 44444321                 1345778 45566 78888777889999988753

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=90.28  E-value=2.3  Score=42.62  Aligned_cols=113  Identities=9%  Similarity=-0.040  Sum_probs=71.2

Q ss_pred             ceEEEEcc-CCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEECCC
Q 011333           85 PYSVEVLP-GGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMN  163 (488)
Q Consensus        85 P~GIaVd~-dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~N  163 (488)
                      -..|++.| +++++++-...+.|+.++..+   +.+.++.... .            .-..-..++++++|.++++=...
T Consensus       167 V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~---~~~~~~~~~~-~------------~~~~~~~~~~~~~~~~l~~g~~d  230 (435)
T 4e54_B          167 ITGLKFNPLNTNQFYASSMEGTTRLQDFKG---NILRVFASSD-T------------INIWFCSLDVSASSRMVVTGDNV  230 (435)
T ss_dssp             CCEEEECSSCTTEEEEECSSSCEEEEETTS---CEEEEEECCS-S------------CSCCCCCEEEETTTTEEEEECSS
T ss_pred             EEEEEEeCCCCCEEEEEeCCCEEEEeeccC---CceeEEeccC-C------------CCccEEEEEECCCCCEEEEEeCC
Confidence            36888987 688888877788999999875   3344444321 0            01123568899999988877777


Q ss_pred             CEEEEEc-CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCC
Q 011333          164 MAIRKIS-DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHF  230 (488)
Q Consensus       164 ~rIrkid-~gg-VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g  230 (488)
                      +.|+.++ .+. +.++.+.                 -..-.+|++.+....++++-...+.|+.+++..
T Consensus       231 g~i~~wd~~~~~~~~~~~h-----------------~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~  282 (435)
T 4e54_B          231 GNVILLNMDGKELWNLRMH-----------------KKKVTHVALNPCCDWFLATASVDQTVKIWDLRQ  282 (435)
T ss_dssp             SBEEEEESSSCBCCCSBCC-----------------SSCEEEEEECTTCSSEEEEEETTSBCCEEETTT
T ss_pred             CcEeeeccCcceeEEEecc-----------------cceEEeeeecCCCceEEEEecCcceeeEEeccc
Confidence            8888888 433 2222111                 112356774333345666666677888887754

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=90.17  E-value=4.5  Score=38.87  Aligned_cols=113  Identities=7%  Similarity=-0.045  Sum_probs=72.0

Q ss_pred             ceEEEEcc--CCcEEEEECCCCeEEEEeCCCCcccccEEEe-cCCCCccccCCCcccccccCCcceEEEcCCCcEEEEEC
Q 011333           85 PYSVEVLP--GGELLILDSANSNLYRISSSLSLYSRPKLVA-GSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADT  161 (488)
Q Consensus        85 P~GIaVd~--dG~LYVaD~~n~rI~kid~~g~~~g~i~tva-G~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~  161 (488)
                      -..+++++  +|.++++-...+.|+.++...+   ....+. +..               -.....+++.++|.++++=.
T Consensus       128 v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~---~~~~~~~~~~---------------~~~i~~~~~~pdg~~lasg~  189 (343)
T 3lrv_A          128 IIYMYGHNEVNTEYFIWADNRGTIGFQSYEDD---SQYIVHSAKS---------------DVEYSSGVLHKDSLLLALYS  189 (343)
T ss_dssp             EEEEECCC---CCEEEEEETTCCEEEEESSSS---CEEEEECCCS---------------SCCCCEEEECTTSCEEEEEC
T ss_pred             EEEEEcCCCCCCCEEEEEeCCCcEEEEECCCC---cEEEEEecCC---------------CCceEEEEECCCCCEEEEEc
Confidence            56788888  8998887777889999998752   222222 110               11256899999999888866


Q ss_pred             CCCEEEEEc--CCC-c-EEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCce
Q 011333          162 MNMAIRKIS--DSG-V-TTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDC  233 (488)
Q Consensus       162 ~N~rIrkid--~gg-V-ttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g~~~  233 (488)
                      .++.|+.+|  .+. + .++.++.                -....+|+ +.++|..+++-..+ .|+.+++....+
T Consensus       190 ~dg~i~iwd~~~~~~~~~~~~~~h----------------~~~v~~l~-fs~~g~~l~s~~~~-~v~iwd~~~~~~  247 (343)
T 3lrv_A          190 PDGILDVYNLSSPDQASSRFPVDE----------------EAKIKEVK-FADNGYWMVVECDQ-TVVCFDLRKDVG  247 (343)
T ss_dssp             TTSCEEEEESSCTTSCCEECCCCT----------------TSCEEEEE-ECTTSSEEEEEESS-BEEEEETTSSTT
T ss_pred             CCCEEEEEECCCCCCCccEEeccC----------------CCCEEEEE-EeCCCCEEEEEeCC-eEEEEEcCCCCc
Confidence            788999998  333 3 3333210                11346788 45666655554443 899999876433

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=90.00  E-value=4.1  Score=40.81  Aligned_cols=121  Identities=11%  Similarity=0.028  Sum_probs=74.1

Q ss_pred             CceEEEEccC-CcEEEEECCCCeEEEEeCCCC--------cccccEEEecCCCCccccCCCcccccccCCcceEEEcCCC
Q 011333           84 EPYSVEVLPG-GELLILDSANSNLYRISSSLS--------LYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRG  154 (488)
Q Consensus        84 ~P~GIaVd~d-G~LYVaD~~n~rI~kid~~g~--------~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG  154 (488)
                      .+..|++.++ +.++++-..++.|+.++....        ....+..+.+.                -....+|++++++
T Consensus       130 ~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h----------------~~~v~~l~~~~~~  193 (430)
T 2xyi_A          130 EVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGH----------------QKEGYGLSWNPNL  193 (430)
T ss_dssp             CCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECC----------------SSCCCCEEECTTS
T ss_pred             cEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCC----------------CCCeEEEEeCCCC
Confidence            6788999996 678887777888999887531        00122222221                1235789999988


Q ss_pred             c-EEEEECCCCEEEEEc-CC-C-c-EEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcC
Q 011333          155 N-IYIADTMNMAIRKIS-DS-G-V-TTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLH  229 (488)
Q Consensus       155 ~-LYVAD~~N~rIrkid-~g-g-V-ttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~  229 (488)
                      . ++++=...+.|+.++ .. . . ..+......           ...-....+|++.+.++.++++....+.|+.+++.
T Consensus       194 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~-----------~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~  262 (430)
T 2xyi_A          194 NGYLLSASDDHTICLWDINATPKEHRVIDAKNIF-----------TGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTR  262 (430)
T ss_dssp             TTEEEEECTTSCEEEEETTSCCBGGGEEECSEEE-----------CCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETT
T ss_pred             CCeEEEEeCCCeEEEEeCCCCCCCCceeccceee-----------cCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECC
Confidence            7 777776778888888 22 1 1 111000000           00112356777544477888888888999999887


Q ss_pred             CC
Q 011333          230 FD  231 (488)
Q Consensus       230 g~  231 (488)
                      ..
T Consensus       263 ~~  264 (430)
T 2xyi_A          263 NN  264 (430)
T ss_dssp             CS
T ss_pred             CC
Confidence            43

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=89.91  E-value=2.9  Score=39.61  Aligned_cols=112  Identities=9%  Similarity=-0.028  Sum_probs=61.4

Q ss_pred             ceEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCC--CcEEEEECC
Q 011333           85 PYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDR--GNIYIADTM  162 (488)
Q Consensus        85 P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~d--G~LYVAD~~  162 (488)
                      -..++++++|.++++-..++.|+.++........+..+.+.                -..-..|++.++  ++++++=..
T Consensus        14 v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h----------------~~~v~~~~~~~~~~~~~l~s~~~   77 (379)
T 3jrp_A           14 IHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGH----------------EGPVWRVDWAHPKFGTILASCSY   77 (379)
T ss_dssp             EEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCC----------------SSCEEEEEECCGGGCSEEEEEET
T ss_pred             EEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCC----------------CCcEEEEEeCCCCCCCEEEEecc
Confidence            45788889998777766677888887653211112222221                112356777655  776665555


Q ss_pred             CCEEEEEc--CCCc---EEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCC--CeEEEEECCCCeEEEEEcCC
Q 011333          163 NMAIRKIS--DSGV---TTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSS--CSLLVIDRGNRAIREIQLHF  230 (488)
Q Consensus       163 N~rIrkid--~ggV---ttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~--G~LYVaD~gN~rIrkI~~~g  230 (488)
                      ++.|+.++  .+..   ..+.+.                 -....+++ +.++  +.++++-..++.|+.+++..
T Consensus        78 dg~v~iwd~~~~~~~~~~~~~~~-----------------~~~v~~~~-~~~~~~~~~l~~~~~d~~i~v~d~~~  134 (379)
T 3jrp_A           78 DGKVLIWKEENGRWSQIAVHAVH-----------------SASVNSVQ-WAPHEYGPLLLVASSDGKVSVVEFKE  134 (379)
T ss_dssp             TSCEEEEEEETTEEEEEEEECCC-----------------SSCEEEEE-ECCGGGCSEEEEEETTSEEEEEECCT
T ss_pred             CCEEEEEEcCCCceeEeeeecCC-----------------CcceEEEE-eCCCCCCCEEEEecCCCcEEEEecCC
Confidence            67777777  4432   222111                 01234556 3444  55555555566677766654

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=89.69  E-value=2.3  Score=40.89  Aligned_cols=112  Identities=9%  Similarity=0.010  Sum_probs=64.9

Q ss_pred             ceEEEEccCCcEEEEECCCCeEEEEeCCCCc-ccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEECCC
Q 011333           85 PYSVEVLPGGELLILDSANSNLYRISSSLSL-YSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMN  163 (488)
Q Consensus        85 P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~-~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~N  163 (488)
                      -..+++.++|+++++-...+.|+.++..... ......+.+.                -.....|++.++|+++++=...
T Consensus        58 v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~----------------~~~v~~~~~~~~~~~l~~~~~d  121 (377)
T 3dwl_C           58 VTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRL----------------NRAATFVRWSPNEDKFAVGSGA  121 (377)
T ss_dssp             EEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCC----------------SSCEEEEECCTTSSCCEEEESS
T ss_pred             EEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeccc----------------CCceEEEEECCCCCEEEEEecC
Confidence            4678889999877776667788888876421 0012222111                1235678888888766655557


Q ss_pred             CEEEEEc--CCC----cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcC
Q 011333          164 MAIRKIS--DSG----VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLH  229 (488)
Q Consensus       164 ~rIrkid--~gg----VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~  229 (488)
                      +.|+.++  .+.    +..+.+..                -....+|+ ..+++.++++-...+.|+.+++.
T Consensus       122 ~~i~iwd~~~~~~~~~~~~~~~~h----------------~~~v~~~~-~~~~~~~l~~~~~d~~i~iwd~~  176 (377)
T 3dwl_C          122 RVISVCYFEQENDWWVSKHLKRPL----------------RSTILSLD-WHPNNVLLAAGCADRKAYVLSAY  176 (377)
T ss_dssp             SCEEECCC-----CCCCEEECSSC----------------CSCEEEEE-ECTTSSEEEEEESSSCEEEEEEC
T ss_pred             CeEEEEEECCcccceeeeEeeccc----------------CCCeEEEE-EcCCCCEEEEEeCCCEEEEEEEE
Confidence            7788877  222    33333211                11346777 56677777776667888888875

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=89.62  E-value=9  Score=34.42  Aligned_cols=72  Identities=11%  Similarity=0.053  Sum_probs=41.6

Q ss_pred             cceEEEcCCCcEEEEECCCCEEEEEc-CC--CcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCe-EEEEEC--
Q 011333          145 PKGLTVDDRGNIYIADTMNMAIRKIS-DS--GVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCS-LLVIDR--  218 (488)
Q Consensus       145 P~GIAvD~dG~LYVAD~~N~rIrkid-~g--gVttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~-LYVaD~--  218 (488)
                      ...++++++|+.+++.. +..|+.++ .+  ....+.....               -....++++ .++|. |+++..  
T Consensus        44 v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~---------------~~~~~~~~~-spdg~~l~~~~~~~  106 (297)
T 2ojh_A           44 FEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFA---------------TICNNDHGI-SPDGALYAISDKVE  106 (297)
T ss_dssp             CEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTC---------------CCBCSCCEE-CTTSSEEEEEECTT
T ss_pred             eEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccc---------------cccccceEE-CCCCCEEEEEEeCC
Confidence            56799999998555543 67888888 33  3443332110               012456674 44554 444442  


Q ss_pred             -CCCeEEEEEcCCCce
Q 011333          219 -GNRAIREIQLHFDDC  233 (488)
Q Consensus       219 -gN~rIrkI~~~g~~~  233 (488)
                       +..+|+.++..+...
T Consensus       107 ~~~~~l~~~~~~~~~~  122 (297)
T 2ojh_A          107 FGKSAIYLLPSTGGTP  122 (297)
T ss_dssp             TSSCEEEEEETTCCCC
T ss_pred             CCcceEEEEECCCCce
Confidence             357888888765433

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=89.49  E-value=7.2  Score=36.40  Aligned_cols=116  Identities=13%  Similarity=0.072  Sum_probs=65.0

Q ss_pred             ceEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEECCCC
Q 011333           85 PYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNM  164 (488)
Q Consensus        85 P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~N~  164 (488)
                      -..|+++++|.++++-...+.|+.++.....  .+..+.+.                 .....+++.+++.+.++- ..+
T Consensus       218 v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~--~~~~~~~~-----------------~~v~~~~~~~~~~~~~~~-~d~  277 (340)
T 4aow_A          218 LNTVTVSPDGSLCASGGKDGQAMLWDLNEGK--HLYTLDGG-----------------DIINALCFSPNRYWLCAA-TGP  277 (340)
T ss_dssp             EEEEEECTTSSEEEEEETTCEEEEEETTTTE--EEEEEECS-----------------SCEEEEEECSSSSEEEEE-ETT
T ss_pred             EEEEEECCCCCEEEEEeCCCeEEEEEeccCc--eeeeecCC-----------------ceEEeeecCCCCceeecc-CCC
Confidence            3567788888877776667788888876421  22222111                 123567777777666554 357


Q ss_pred             EEEEEc-CCC--cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcC
Q 011333          165 AIRKIS-DSG--VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLH  229 (488)
Q Consensus       165 rIrkid-~gg--VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~  229 (488)
                      .|+.++ .++  +..+.......        .....-..-.+|+ +.++|.++++-...+.|+.+++.
T Consensus       278 ~i~iwd~~~~~~~~~~~~~~~~~--------~~~~h~~~v~~l~-~s~dg~~l~sgs~Dg~v~iW~~~  336 (340)
T 4aow_A          278 SIKIWDLEGKIIVDELKQEVIST--------SSKAEPPQCTSLA-WSADGQTLFAGYTDNLVRVWQVT  336 (340)
T ss_dssp             EEEEEETTTTEEEEEECCC---------------CCCCCEEEEE-ECTTSSEEEEEETTSCEEEEEEE
T ss_pred             EEEEEECCCCeEEEeccccceee--------eccCCCCCEEEEE-ECCCCCEEEEEeCCCEEEEEeCC
Confidence            788887 333  22222110000        0011112336777 57788877777677888888764

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=89.43  E-value=12  Score=33.68  Aligned_cols=69  Identities=23%  Similarity=0.275  Sum_probs=42.9

Q ss_pred             CceEEEEccCCcEEEEECCCCeEEEEeCCC-CcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcE-EEEEC
Q 011333           84 EPYSVEVLPGGELLILDSANSNLYRISSSL-SLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNI-YIADT  161 (488)
Q Consensus        84 ~P~GIaVd~dG~LYVaD~~n~rI~kid~~g-~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~L-YVAD~  161 (488)
                      ....++++++|.++++.. .+.|+.++..+ +.   ...+...   .           .-.....+++.++|.. +++..
T Consensus        43 ~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~---~~~~~~~---~-----------~~~~~~~~~~spdg~~l~~~~~  104 (297)
T 2ojh_A           43 LFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPS---PEKVDTG---F-----------ATICNNDHGISPDGALYAISDK  104 (297)
T ss_dssp             CCEEEEECTTSSEEEEEE-TTEEEEEESSSCCS---CEECCCT---T-----------CCCBCSCCEECTTSSEEEEEEC
T ss_pred             ceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCC---ceEeccc---c-----------ccccccceEECCCCCEEEEEEe
Confidence            467889999999665543 56999999875 32   2222111   0           0123567899999974 44432


Q ss_pred             ---CCCEEEEEc
Q 011333          162 ---MNMAIRKIS  170 (488)
Q Consensus       162 ---~N~rIrkid  170 (488)
                         ...+|..++
T Consensus       105 ~~~~~~~l~~~~  116 (297)
T 2ojh_A          105 VEFGKSAIYLLP  116 (297)
T ss_dssp             TTTSSCEEEEEE
T ss_pred             CCCCcceEEEEE
Confidence               257788887

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=89.40  E-value=2.4  Score=44.91  Aligned_cols=117  Identities=9%  Similarity=0.027  Sum_probs=68.9

Q ss_pred             ceEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEECCCC
Q 011333           85 PYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNM  164 (488)
Q Consensus        85 P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~N~  164 (488)
                      +..++++|||.++++-..++.|+.++..+.....+.. .+.                -...+.|++.++|.++++-...+
T Consensus       451 v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h----------------~~~v~~v~fspdg~~las~s~d~  513 (611)
T 1nr0_A          451 SSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVH----------------PAEITSVAFSNNGAFLVATDQSR  513 (611)
T ss_dssp             EEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEE-EEC----------------SSCEEEEEECTTSSEEEEEETTS
T ss_pred             ceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeec-cCC----------------CCceEEEEECCCCCEEEEEcCCC
Confidence            4566677777766666566677776655311000011 111                12356899999999888776778


Q ss_pred             EEEEEc-CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCC
Q 011333          165 AIRKIS-DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFD  231 (488)
Q Consensus       165 rIrkid-~ggVttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g~  231 (488)
                      .|+.++ ...-..+.....+   +         .-...++|+ +.++|.++++-...+.|+.++....
T Consensus       514 ~v~~w~~~~~~~~~~~~~~~---~---------H~~~V~~v~-fspdg~~lasgs~D~~v~lW~~~~~  568 (611)
T 1nr0_A          514 KVIPYSVANNFELAHTNSWT---F---------HTAKVACVS-WSPDNVRLATGSLDNSVIVWNMNKP  568 (611)
T ss_dssp             CEEEEEGGGTTEESCCCCCC---C---------CSSCEEEEE-ECTTSSEEEEEETTSCEEEEETTCT
T ss_pred             CEEEEEcCCCCceeeeeeee---e---------cccceeEEE-ECCCCCEEEEEECCCcEEEEECCCc
Confidence            888888 3211111100000   0         112346788 5778888888777889999998753

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=89.32  E-value=9.7  Score=37.35  Aligned_cols=114  Identities=9%  Similarity=0.001  Sum_probs=66.8

Q ss_pred             CceEEEEccCC-cEEEEEC--CCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEE-
Q 011333           84 EPYSVEVLPGG-ELLILDS--ANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIA-  159 (488)
Q Consensus        84 ~P~GIaVd~dG-~LYVaD~--~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVA-  159 (488)
                      ....+++.++| .|+++-.  ..+.|+.++...+   ........                -.....+++.++|..+++ 
T Consensus       261 ~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~---~~~~~~~~----------------~~~v~~~~~s~~~~~l~~~  321 (401)
T 4aez_A          261 AVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATG---ARVNTVDA----------------GSQVTSLIWSPHSKEIMST  321 (401)
T ss_dssp             CCCEEEECTTSTTEEEEECCTTTCEEEEEETTTC---CEEEEEEC----------------SSCEEEEEECSSSSEEEEE
T ss_pred             eEEEEEECCCCCCEEEEecCCCCCEEEEEECCCC---CEEEEEeC----------------CCcEEEEEECCCCCeEEEE
Confidence            34567777755 4555543  4677777776542   22222111                123568999999987666 


Q ss_pred             -ECCCCEEEEEc--CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCC
Q 011333          160 -DTMNMAIRKIS--DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFD  231 (488)
Q Consensus       160 -D~~N~rIrkid--~ggVttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g~  231 (488)
                       -..++.|+.++  .+....+.....              .-....+++ +.+++.++++-..++.|+.++....
T Consensus       322 ~g~~dg~i~v~~~~~~~~~~~~~~~~--------------h~~~v~~~~-~s~dg~~l~s~~~dg~i~iw~~~~~  381 (401)
T 4aez_A          322 HGFPDNNLSIWSYSSSGLTKQVDIPA--------------HDTRVLYSA-LSPDGRILSTAASDENLKFWRVYDG  381 (401)
T ss_dssp             ECTTTCEEEEEEEETTEEEEEEEEEC--------------CSSCCCEEE-ECTTSSEEEEECTTSEEEEEECCC-
T ss_pred             eecCCCcEEEEecCCccceeEEEecC--------------CCCCEEEEE-ECCCCCEEEEEeCCCcEEEEECCCC
Confidence             33578888888  333322211000              011346777 5677877777777888998887653

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=89.24  E-value=3.5  Score=40.41  Aligned_cols=112  Identities=13%  Similarity=0.037  Sum_probs=67.4

Q ss_pred             CceEEEEccC-CcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCC-cEEEEEC
Q 011333           84 EPYSVEVLPG-GELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRG-NIYIADT  161 (488)
Q Consensus        84 ~P~GIaVd~d-G~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG-~LYVAD~  161 (488)
                      .+..|++.|+ +.++++-..++.|+.++.....  .+.++.+.                -..-+.|++.++| .+.++=.
T Consensus       228 ~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~--~~~~~~~~----------------~~~v~~l~~sp~~~~~lasgs  289 (357)
T 4g56_B          228 IPTSVTWHPEKDDTFACGDETGNVSLVNIKNPD--SAQTSAVH----------------SQNITGLAYSYHSSPFLASIS  289 (357)
T ss_dssp             CEEEEEECTTSTTEEEEEESSSCEEEEESSCGG--GCEEECCC----------------SSCEEEEEECSSSSCCEEEEE
T ss_pred             cccchhhhhcccceEEEeecccceeEEECCCCc--EeEEEecc----------------ceeEEEEEEcCCCCCEEEEEe
Confidence            3567888876 4566665567788888876421  23333322                1123578888877 4444444


Q ss_pred             CCCEEEEEc-C-CCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCC
Q 011333          162 MNMAIRKIS-D-SGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHF  230 (488)
Q Consensus       162 ~N~rIrkid-~-ggVttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g  230 (488)
                      ..+.|+.++ . +.+....+-.                 ...++|++.+.++.++++-...+.|+.+++..
T Consensus       290 ~D~~i~iwd~~~~~~~~~~~H~-----------------~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~  343 (357)
T 4g56_B          290 EDCTVAVLDADFSEVFRDLSHR-----------------DFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPS  343 (357)
T ss_dssp             TTSCEEEECTTSCEEEEECCCS-----------------SCEEEEEECSSSTTEEEEEETTSCEEEEECC-
T ss_pred             CCCEEEEEECCCCcEeEECCCC-----------------CCEEEEEEeCCCCCEEEEEcCCCeEEEEECCC
Confidence            467888888 3 3333332211                 12467885445777777777778888888753

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=89.01  E-value=9.9  Score=37.30  Aligned_cols=111  Identities=11%  Similarity=0.038  Sum_probs=63.8

Q ss_pred             CceEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCC-cEEEEEC-
Q 011333           84 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRG-NIYIADT-  161 (488)
Q Consensus        84 ~P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG-~LYVAD~-  161 (488)
                      ...++++.++|.++++-...+.|+.++.....  .+..+.+.                -.....|++.++| .++++-. 
T Consensus       219 ~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~--~~~~~~~~----------------~~~v~~~~~~p~~~~ll~~~~g  280 (401)
T 4aez_A          219 EVCGLAWRSDGLQLASGGNDNVVQIWDARSSI--PKFTKTNH----------------NAAVKAVAWCPWQSNLLATGGG  280 (401)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTCSS--EEEEECCC----------------SSCCCEEEECTTSTTEEEEECC
T ss_pred             CeeEEEEcCCCCEEEEEeCCCeEEEccCCCCC--ccEEecCC----------------cceEEEEEECCCCCCEEEEecC
Confidence            34567777777766665556677777766421  11222111                1235689999876 5666643 


Q ss_pred             -CCCEEEEEc--CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEE--ECCCCeEEEEEcCCC
Q 011333          162 -MNMAIRKIS--DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVI--DRGNRAIREIQLHFD  231 (488)
Q Consensus       162 -~N~rIrkid--~gg-VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVa--D~gN~rIrkI~~~g~  231 (488)
                       ..+.|+.++  .+. +.++...                  ....+++ ..+++..+++  ...++.|+.++....
T Consensus       281 s~d~~i~i~d~~~~~~~~~~~~~------------------~~v~~~~-~s~~~~~l~~~~g~~dg~i~v~~~~~~  337 (401)
T 4aez_A          281 TMDKQIHFWNAATGARVNTVDAG------------------SQVTSLI-WSPHSKEIMSTHGFPDNNLSIWSYSSS  337 (401)
T ss_dssp             TTTCEEEEEETTTCCEEEEEECS------------------SCEEEEE-ECSSSSEEEEEECTTTCEEEEEEEETT
T ss_pred             CCCCEEEEEECCCCCEEEEEeCC------------------CcEEEEE-ECCCCCeEEEEeecCCCcEEEEecCCc
Confidence             578899998  333 3333221                  1245666 4555555554  335677777776653

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=88.58  E-value=7.6  Score=36.54  Aligned_cols=111  Identities=8%  Similarity=0.036  Sum_probs=64.1

Q ss_pred             eEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcC--CCcEEEEECCC
Q 011333           86 YSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDD--RGNIYIADTMN  163 (488)
Q Consensus        86 ~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~--dG~LYVAD~~N  163 (488)
                      ..++++++|.++++-..++.|+.++.++.....+.++.|.    .    +        .-..|++.+  +|+++++=...
T Consensus        13 ~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH----~----~--------~V~~v~~s~~~~g~~l~s~s~D   76 (297)
T 2pm7_B           13 HDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGH----E----G--------PVWRVDWAHPKFGTILASCSYD   76 (297)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCC----S----S--------CEEEEEECCGGGCSEEEEEETT
T ss_pred             EEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccc----c----C--------CeEEEEecCCCcCCEEEEEcCC
Confidence            5788999999888877788899998763211123344332    1    1        134577754  37777766667


Q ss_pred             CEEEEEc-C-CC---cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCC--CeEEEEECCCCeEEEEEcCC
Q 011333          164 MAIRKIS-D-SG---VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSS--CSLLVIDRGNRAIREIQLHF  230 (488)
Q Consensus       164 ~rIrkid-~-gg---VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~--G~LYVaD~gN~rIrkI~~~g  230 (488)
                      +.|+..+ . +.   +.++.+..                 ....+|++ .++  |.++++-...+.|+.++...
T Consensus        77 ~~v~iWd~~~~~~~~~~~~~~h~-----------------~~v~~v~~-~p~~~g~~l~s~s~d~~v~~wd~~~  132 (297)
T 2pm7_B           77 GKVMIWKEENGRWSQIAVHAVHS-----------------ASVNSVQW-APHEYGPMLLVASSDGKVSVVEFKE  132 (297)
T ss_dssp             TEEEEEEBSSSCBCCCEEECCCS-----------------SCEEEEEE-CCGGGCSEEEEEETTSEEEEEEBCS
T ss_pred             CEEEEEEcCCCceEEEEEeecCC-----------------CceeEEEe-CcCCCCcEEEEEECCCcEEEEEecC
Confidence            8888887 2 22   23332211                 12345663 333  55555555567777777653

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=88.46  E-value=9.9  Score=36.94  Aligned_cols=112  Identities=11%  Similarity=0.035  Sum_probs=69.7

Q ss_pred             eEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcC--CCcEEEEECCC
Q 011333           86 YSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDD--RGNIYIADTMN  163 (488)
Q Consensus        86 ~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~--dG~LYVAD~~N  163 (488)
                      ..+++.+++..+++-...+.|+.++...+.  .+..+.|..                .....+++.+  +|+++++=...
T Consensus       158 ~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~--~~~~~~~h~----------------~~v~~~~~~~~~~g~~l~sgs~D  219 (354)
T 2pbi_B          158 SACSFTNSDMQILTASGDGTCALWDVESGQ--LLQSFHGHG----------------ADVLCLDLAPSETGNTFVSGGCD  219 (354)
T ss_dssp             EEEEECSSSSEEEEEETTSEEEEEETTTCC--EEEEEECCS----------------SCEEEEEECCCSSCCEEEEEETT
T ss_pred             EEEEEeCCCCEEEEEeCCCcEEEEeCCCCe--EEEEEcCCC----------------CCeEEEEEEeCCCCCEEEEEeCC
Confidence            567788888877777778899999987532  233443321                1123455554  56766666667


Q ss_pred             CEEEEEc--CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCce
Q 011333          164 MAIRKIS--DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDC  233 (488)
Q Consensus       164 ~rIrkid--~gg-VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g~~~  233 (488)
                      +.|+.++  .+. +.++.+..                 ....+|+ +.+++.++++-...+.|+.+++....+
T Consensus       220 g~v~~wd~~~~~~~~~~~~h~-----------------~~v~~v~-~~p~~~~l~s~s~D~~v~lwd~~~~~~  274 (354)
T 2pbi_B          220 KKAMVWDMRSGQCVQAFETHE-----------------SDVNSVR-YYPSGDAFASGSDDATCRLYDLRADRE  274 (354)
T ss_dssp             SCEEEEETTTCCEEEEECCCS-----------------SCEEEEE-ECTTSSEEEEEETTSCEEEEETTTTEE
T ss_pred             CeEEEEECCCCcEEEEecCCC-----------------CCeEEEE-EeCCCCEEEEEeCCCeEEEEECCCCcE
Confidence            8888888  333 33332211                 1235677 566777777777778888888875433

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=88.43  E-value=10  Score=36.10  Aligned_cols=113  Identities=12%  Similarity=0.059  Sum_probs=67.7

Q ss_pred             ceEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcC------CCcEEE
Q 011333           85 PYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDD------RGNIYI  158 (488)
Q Consensus        85 P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~------dG~LYV  158 (488)
                      -..+++++++.++++-...+.|+.++..+   ..+..+.+..                ..-..+++.+      ++.+++
T Consensus       110 v~~~~~~~~~~~l~s~s~D~~i~vwd~~~---~~~~~~~~h~----------------~~v~~~~~~~~~~~~~~~~~l~  170 (319)
T 3frx_A          110 VMSVDIDKKASMIISGSRDKTIKVWTIKG---QCLATLLGHN----------------DWVSQVRVVPNEKADDDSVTII  170 (319)
T ss_dssp             EEEEEECTTSCEEEEEETTSCEEEEETTS---CEEEEECCCS----------------SCEEEEEECCC------CCEEE
T ss_pred             EEEEEEcCCCCEEEEEeCCCeEEEEECCC---CeEEEEeccC----------------CcEEEEEEccCCCCCCCccEEE
Confidence            46788888888888877778899998875   2334443321                1123344443      344566


Q ss_pred             EECCCCEEEEEcC--CCc-EEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCceE
Q 011333          159 ADTMNMAIRKISD--SGV-TTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCA  234 (488)
Q Consensus       159 AD~~N~rIrkid~--ggV-ttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g~~~~  234 (488)
                      +-...+.|+.++-  ... ..+.+..                 .....++ +.++|.++++-...+.|+.++.....+.
T Consensus       171 s~~~d~~i~~wd~~~~~~~~~~~~h~-----------------~~v~~~~-~sp~g~~l~s~~~dg~i~iwd~~~~~~~  231 (319)
T 3frx_A          171 SAGNDKMVKAWNLNQFQIEADFIGHN-----------------SNINTLT-ASPDGTLIASAGKDGEIMLWNLAAKKAM  231 (319)
T ss_dssp             EEETTSCEEEEETTTTEEEEEECCCC-----------------SCEEEEE-ECTTSSEEEEEETTCEEEEEETTTTEEE
T ss_pred             EEeCCCEEEEEECCcchhheeecCCC-----------------CcEEEEE-EcCCCCEEEEEeCCCeEEEEECCCCcEE
Confidence            6556777888872  222 2222211                 1235677 5667777777767788888888765443

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=88.20  E-value=6.9  Score=44.61  Aligned_cols=115  Identities=9%  Similarity=0.040  Sum_probs=70.5

Q ss_pred             CceEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEECCC
Q 011333           84 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMN  163 (488)
Q Consensus        84 ~P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~N  163 (488)
                      .-..++++++|.++++-..++.|+.++...+.  .+..+.+.                -.....++++++|.+.++=...
T Consensus       617 ~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~--~~~~~~~h----------------~~~v~~~~~s~~~~~l~s~~~d  678 (1249)
T 3sfz_A          617 AVYHACFSQDGQRIASCGADKTLQVFKAETGE--KLLDIKAH----------------EDEVLCCAFSSDDSYIATCSAD  678 (1249)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTTCC--EEEEECCC----------------SSCEEEEEECTTSSEEEEEETT
T ss_pred             cEEEEEECCCCCEEEEEeCCCeEEEEECCCCC--EEEEeccC----------------CCCEEEEEEecCCCEEEEEeCC
Confidence            34678899999988877777899999987532  23333221                1235679999999877776667


Q ss_pred             CEEEEEc--CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECC-CCeEEEEECCCCeEEEEEcCCCce
Q 011333          164 MAIRKIS--DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGS-SCSLLVIDRGNRAIREIQLHFDDC  233 (488)
Q Consensus       164 ~rIrkid--~gg-VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~-~G~LYVaD~gN~rIrkI~~~g~~~  233 (488)
                      +.|+.++  .+. +.++.+...                 ...++++.+. ++.++++-...+.|+.++.....+
T Consensus       679 ~~v~vwd~~~~~~~~~~~~~~~-----------------~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~  735 (1249)
T 3sfz_A          679 KKVKIWDSATGKLVHTYDEHSE-----------------QVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKEC  735 (1249)
T ss_dssp             SEEEEEETTTCCEEEEEECCSS-----------------CEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSE
T ss_pred             CeEEEEECCCCceEEEEcCCCC-----------------cEEEEEEecCCCceEEEEEeCCCeEEEEECCCcch
Confidence            8899998  344 444443211                 1234453222 334555555566666666654433

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=88.03  E-value=17  Score=38.83  Aligned_cols=112  Identities=11%  Similarity=0.029  Sum_probs=67.6

Q ss_pred             ceEEEEcc-CCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcC--CCcEEEEEC
Q 011333           85 PYSVEVLP-GGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDD--RGNIYIADT  161 (488)
Q Consensus        85 P~GIaVd~-dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~--dG~LYVAD~  161 (488)
                      ...+++++ +|.++++-..++.|+.++.....  ....+.+..               -.....+++.+  +|.++++=.
T Consensus       143 v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~--~~~~~~~~~---------------~~~v~~~~~~~~~~~~~l~~~~  205 (814)
T 3mkq_A          143 VMCVAFNPKDPSTFASGCLDRTVKVWSLGQST--PNFTLTTGQ---------------ERGVNYVDYYPLPDKPYMITAS  205 (814)
T ss_dssp             EEEEEEETTEEEEEEEEETTSEEEEEETTCSS--CSEEEECCC---------------TTCCCEEEECCSTTCCEEEEEC
T ss_pred             EEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc--ceeEEecCC---------------CCCEEEEEEEECCCCCEEEEEe
Confidence            46777877 77777766667788888875421  222222210               12345688887  888777777


Q ss_pred             CCCEEEEEc-C-CC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCC
Q 011333          162 MNMAIRKIS-D-SG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFD  231 (488)
Q Consensus       162 ~N~rIrkid-~-gg-VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g~  231 (488)
                      .++.|+.++ . +. +.++.+..                 ....+++ ..+++.++++-...+.|+.++....
T Consensus       206 ~dg~i~~~d~~~~~~~~~~~~~~-----------------~~v~~~~-~~~~~~~l~~~~~dg~v~vwd~~~~  260 (814)
T 3mkq_A          206 DDLTIKIWDYQTKSCVATLEGHM-----------------SNVSFAV-FHPTLPIIISGSEDGTLKIWNSSTY  260 (814)
T ss_dssp             TTSEEEEEETTTTEEEEEEECCS-----------------SCEEEEE-ECSSSSEEEEEETTSCEEEEETTTC
T ss_pred             CCCEEEEEECCCCcEEEEEcCCC-----------------CCEEEEE-EcCCCCEEEEEeCCCeEEEEECCCC
Confidence            788999998 3 33 34443211                 1234566 4556666666556677777776643

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=87.52  E-value=3.3  Score=38.92  Aligned_cols=114  Identities=11%  Similarity=0.033  Sum_probs=67.8

Q ss_pred             CceEEEEccCCcEEEEECCCCeEEEEeCCCCcc-cccEEEecCCCCccccCCCcccccccCCcceEEEcCCCc-EEEEEC
Q 011333           84 EPYSVEVLPGGELLILDSANSNLYRISSSLSLY-SRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-IYIADT  161 (488)
Q Consensus        84 ~P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~-g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~-LYVAD~  161 (488)
                      .-..++++++|.++++-...+.|+.++...... ..+..+.+.                -.....+++.++|+ ++++=.
T Consensus        13 ~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~----------------~~~v~~~~~~~~~~~~l~~~~   76 (342)
T 1yfq_A           13 YISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRY----------------KHPLLCCNFIDNTDLQIYVGT   76 (342)
T ss_dssp             CEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEEC----------------SSCEEEEEEEESSSEEEEEEE
T ss_pred             cEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeec----------------CCceEEEEECCCCCcEEEEEc
Confidence            346788889988777666678888888764210 002223221                12356789999998 555544


Q ss_pred             CCCEEEEEcC-CC--cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCC
Q 011333          162 MNMAIRKISD-SG--VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHF  230 (488)
Q Consensus       162 ~N~rIrkid~-gg--VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g  230 (488)
                      ..+.|+.++- ..  ..++.+..               .-....+|++.+  +.++++-...+.|+.+++..
T Consensus        77 ~dg~i~~wd~~~~~~~~~~~~~~---------------~~~~v~~l~~~~--~~~l~s~~~d~~i~iwd~~~  131 (342)
T 1yfq_A           77 VQGEILKVDLIGSPSFQALTNNE---------------ANLGICRICKYG--DDKLIAASWDGLIEVIDPRN  131 (342)
T ss_dssp             TTSCEEEECSSSSSSEEECBSCC---------------CCSCEEEEEEET--TTEEEEEETTSEEEEECHHH
T ss_pred             CCCeEEEEEeccCCceEeccccC---------------CCCceEEEEeCC--CCEEEEEcCCCeEEEEcccc
Confidence            5778888873 32  33332200               011345777544  55666666678888888663

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=87.48  E-value=8.4  Score=37.70  Aligned_cols=128  Identities=9%  Similarity=0.029  Sum_probs=73.6

Q ss_pred             CceEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEec-CCCCccccCCCcccccccCCcceEEEcCCC-cEEEEEC
Q 011333           84 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAG-SAEGYSGHVDGKPREARMNHPKGLTVDDRG-NIYIADT  161 (488)
Q Consensus        84 ~P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG-~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG-~LYVAD~  161 (488)
                      ....+++.++|.++++- ..+.|+.++....  +....+.. ......++         -.....++++++| +++++=.
T Consensus       179 ~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~--~~~~~~~~~~~~~~~~~---------~~~v~~~~~~p~~~~~l~s~~  246 (447)
T 3dw8_B          179 HINSISINSDYETYLSA-DDLRINLWHLEIT--DRSFNIVDIKPANMEEL---------TEVITAAEFHPNSCNTFVYSS  246 (447)
T ss_dssp             CCCEEEECTTSSEEEEE-CSSEEEEEETTEE--EEEEEEEECCCSSGGGC---------CCCEEEEEECSSCTTEEEEEE
T ss_pred             ceEEEEEcCCCCEEEEe-CCCeEEEEECCCC--Cceeeeeeccccccccc---------CcceEEEEECCCCCcEEEEEe
Confidence            45689999999988876 6889999998721  11111111 10011111         2246789999998 7777776


Q ss_pred             CCCEEEEEc--CCC-----cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCC
Q 011333          162 MNMAIRKIS--DSG-----VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHF  230 (488)
Q Consensus       162 ~N~rIrkid--~gg-----VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g  230 (488)
                      ..+.|+.++  .+.     +.++.+.....     .............+|+ +.++|.++++-.. +.|+.+++..
T Consensus       247 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~v~~~~-~s~~g~~l~~~~~-~~v~iwd~~~  315 (447)
T 3dw8_B          247 SKGTIRLCDMRASALCDRHSKLFEEPEDPS-----NRSFFSEIISSISDVK-FSHSGRYMMTRDY-LSVKVWDLNM  315 (447)
T ss_dssp             TTSCEEEEETTTCSSSCTTCEEECCC----------CCHHHHHTTCEEEEE-ECTTSSEEEEEES-SEEEEEETTC
T ss_pred             CCCeEEEEECcCCccccceeeEeccCCCcc-----ccccccccCceEEEEE-ECCCCCEEEEeeC-CeEEEEeCCC
Confidence            788899988  333     24443221000     0000000011346777 5667776666655 8999998864

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=87.40  E-value=18  Score=38.03  Aligned_cols=138  Identities=12%  Similarity=0.042  Sum_probs=76.8

Q ss_pred             ceEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEECCCC
Q 011333           85 PYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNM  164 (488)
Q Consensus        85 P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~N~  164 (488)
                      -..+++.|+|.++++-...+.|+.++...+.  .+.++........|+         -....+|++.++|.++++=...+
T Consensus       193 V~~v~fspdg~~las~s~D~~i~lwd~~~g~--~~~~~~~~~~~~~~h---------~~~V~~v~~spdg~~l~s~s~D~  261 (611)
T 1nr0_A          193 VHSVRYNPDGSLFASTGGDGTIVLYNGVDGT--KTGVFEDDSLKNVAH---------SGSVFGLTWSPDGTKIASASADK  261 (611)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTCC--EEEECBCTTSSSCSS---------SSCEEEEEECTTSSEEEEEETTS
T ss_pred             eEEEEECCCCCEEEEEECCCcEEEEECCCCc--Eeeeecccccccccc---------CCCEEEEEECCCCCEEEEEeCCC
Confidence            4678888899888887777888888865421  122221100000022         12357899999999888777778


Q ss_pred             EEEEEc-C-CC-cEEEeCCccCC-------------CCCCCCCCc-------------ccccCCCCCeeEEECCCCeEEE
Q 011333          165 AIRKIS-D-SG-VTTIAGGKWGR-------------GGGHVDGPS-------------EDAKFSNDFDVVYIGSSCSLLV  215 (488)
Q Consensus       165 rIrkid-~-gg-VttIaGg~~g~-------------~~g~~dG~~-------------~~a~f~~P~gIa~vd~~G~LYV  215 (488)
                      .|+.++ . +. +.++..+....             -.+..||..             ....-....+|+ +.++|..++
T Consensus       262 ~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~-~spdg~~l~  340 (611)
T 1nr0_A          262 TIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALS-SSADGKTLF  340 (611)
T ss_dssp             EEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEE-ECTTSSEEE
T ss_pred             eEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEE-EeCCCCEEE
Confidence            899888 3 33 33332210000             000001100             001112345677 566777777


Q ss_pred             EECCCCeEEEEEcCCCceE
Q 011333          216 IDRGNRAIREIQLHFDDCA  234 (488)
Q Consensus       216 aD~gN~rIrkI~~~g~~~~  234 (488)
                      +-...+.|+.++.....+.
T Consensus       341 s~s~D~~v~~Wd~~~~~~~  359 (611)
T 1nr0_A          341 SADAEGHINSWDISTGISN  359 (611)
T ss_dssp             EEETTSCEEEEETTTCCEE
T ss_pred             EEeCCCcEEEEECCCCcee
Confidence            6667788998888765443

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=87.36  E-value=6.9  Score=39.21  Aligned_cols=117  Identities=10%  Similarity=0.031  Sum_probs=69.9

Q ss_pred             CceEEEEccCCcE-EEEECCCCeEEEEeCC--CCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEE
Q 011333           84 EPYSVEVLPGGEL-LILDSANSNLYRISSS--LSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIAD  160 (488)
Q Consensus        84 ~P~GIaVd~dG~L-YVaD~~n~rI~kid~~--g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD  160 (488)
                      ....++++++|.. +++-...+.|+.++..  ++  ..+..+.+.     +         .-..+..|+++++|..+++=
T Consensus       104 ~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~--~~~~~~~~~-----~---------~~~~v~~~~~sp~~~~l~~~  167 (450)
T 2vdu_B          104 YIRNLRLTSDESRLIACADSDKSLLVFDVDKTSK--NVLKLRKRF-----C---------FSKRPNAISIAEDDTTVIIA  167 (450)
T ss_dssp             CEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSS--SCEEEEEEE-----E---------CSSCEEEEEECTTSSEEEEE
T ss_pred             ceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCC--ceeeeeecc-----c---------CCCCceEEEEcCCCCEEEEE
Confidence            4578999999986 4666667888888866  42  123333211     0         01246789999999744443


Q ss_pred             CCCCEEEEEc--CCCcE-----EEeCCccCCCCCCCCCCcccccCCCCCeeEEECCC---CeEEEEECCCCeEEEEEcCC
Q 011333          161 TMNMAIRKIS--DSGVT-----TIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSS---CSLLVIDRGNRAIREIQLHF  230 (488)
Q Consensus       161 ~~N~rIrkid--~ggVt-----tIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~---G~LYVaD~gN~rIrkI~~~g  230 (488)
                      .....|+.++  ++...     ++.+                 .-....+|++ .++   +.++++-...+.|+.+++..
T Consensus       168 ~~~g~v~~~~~~~~~~~~~~~~~~~~-----------------h~~~v~~~~~-sp~~~~~~~l~s~~~d~~i~vwd~~~  229 (450)
T 2vdu_B          168 DKFGDVYSIDINSIPEEKFTQEPILG-----------------HVSMLTDVHL-IKDSDGHQFIITSDRDEHIKISHYPQ  229 (450)
T ss_dssp             ETTSEEEEEETTSCCCSSCCCCCSEE-----------------CSSCEEEEEE-EECTTSCEEEEEEETTSCEEEEEESC
T ss_pred             eCCCcEEEEecCCcccccccceeeec-----------------ccCceEEEEE-cCCCCCCcEEEEEcCCCcEEEEECCC
Confidence            3477788887  22211     1111                 1123567774 455   66666656678899988875


Q ss_pred             CceE
Q 011333          231 DDCA  234 (488)
Q Consensus       231 ~~~~  234 (488)
                      ..+.
T Consensus       230 ~~~~  233 (450)
T 2vdu_B          230 CFIV  233 (450)
T ss_dssp             TTCE
T ss_pred             Ccee
Confidence            4443

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=87.31  E-value=2.7  Score=39.58  Aligned_cols=109  Identities=11%  Similarity=0.035  Sum_probs=64.8

Q ss_pred             EccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcC---CCcEEEEECCCCEE
Q 011333           90 VLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDD---RGNIYIADTMNMAI  166 (488)
Q Consensus        90 Vd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~---dG~LYVAD~~N~rI  166 (488)
                      +++++.++++-..++.|+.++....   ......+.                -.....+++++   +++.+++-...+.|
T Consensus       176 ~~~~~~~l~~~~~d~~i~i~d~~~~---~~~~~~~~----------------~~~v~~~~~~~~~~~~~~l~~~~~dg~i  236 (357)
T 3i2n_A          176 YNQEERVVCAGYDNGDIKLFDLRNM---ALRWETNI----------------KNGVCSLEFDRKDISMNKLVATSLEGKF  236 (357)
T ss_dssp             CC-CCCEEEEEETTSEEEEEETTTT---EEEEEEEC----------------SSCEEEEEESCSSSSCCEEEEEESTTEE
T ss_pred             cCCCCCEEEEEccCCeEEEEECccC---ceeeecCC----------------CCceEEEEcCCCCCCCCEEEEECCCCeE
Confidence            4578888887777789999998752   33222221                12356789998   78777666668888


Q ss_pred             EEEc--CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCe-EEEEECCCCeEEEEEcCC
Q 011333          167 RKIS--DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCS-LLVIDRGNRAIREIQLHF  230 (488)
Q Consensus       167 rkid--~gg-VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~-LYVaD~gN~rIrkI~~~g  230 (488)
                      +.++  .+. +..+.-...            ...-....++++ .+++. ++++-...+.|+.++...
T Consensus       237 ~i~d~~~~~~~~~~~~~~~------------~~~~~~v~~~~~-~~~~~~~l~~~~~dg~i~iwd~~~  291 (357)
T 3i2n_A          237 HVFDMRTQHPTKGFASVSE------------KAHKSTVWQVRH-LPQNRELFLTAGGAGGLHLWKYEY  291 (357)
T ss_dssp             EEEEEEEEETTTEEEEEEE------------ECCSSCEEEEEE-ETTEEEEEEEEETTSEEEEEEEEC
T ss_pred             EEEeCcCCCcccceeeecc------------CCCcCCEEEEEE-CCCCCcEEEEEeCCCcEEEeecCC
Confidence            8888  222 222110000            000113466774 45565 677766778888888764

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=87.20  E-value=5.6  Score=38.49  Aligned_cols=123  Identities=9%  Similarity=0.035  Sum_probs=72.7

Q ss_pred             CceEEEEccCCcEEEEECCCCeEEEEeCCCCccc--ccEEEecCCCCccccCCCcccccccCCcceEEEcCC-CcEEEEE
Q 011333           84 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYS--RPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDR-GNIYIAD  160 (488)
Q Consensus        84 ~P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g--~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~d-G~LYVAD  160 (488)
                      ....+++.++|.++++-..++.|+.++......+  .+..+.+.                -.....|++.++ ++++++=
T Consensus        69 ~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h----------------~~~v~~~~~~~~~~~~l~s~  132 (416)
T 2pm9_A           69 KFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNH----------------SSSVKTVKFNAKQDNVLASG  132 (416)
T ss_dssp             CEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCS----------------SSCCCEEEECSSSTTBEEEE
T ss_pred             ceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCC----------------ccceEEEEEcCCCCCEEEEE
Confidence            3567888899987777666778999987641101  12222111                123567999987 7777776


Q ss_pred             CCCCEEEEEc-CCCc------EEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCce
Q 011333          161 TMNMAIRKIS-DSGV------TTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDC  233 (488)
Q Consensus       161 ~~N~rIrkid-~ggV------ttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g~~~  233 (488)
                      ...+.|+.++ ..+-      ..+.-..            ....-....++++.+..+.++++-...+.|+.+++....+
T Consensus       133 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~------------~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~  200 (416)
T 2pm9_A          133 GNNGEIFIWDMNKCTESPSNYTPLTPGQ------------SMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKE  200 (416)
T ss_dssp             CSSSCEEBCBTTTTSSCTTTCCCBCCCC------------SCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEE
T ss_pred             cCCCeEEEEECCCCcccccccccccccc------------ccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCc
Confidence            6778888888 2211      1100000            0011123567884333367777777788899988876544


Q ss_pred             E
Q 011333          234 A  234 (488)
Q Consensus       234 ~  234 (488)
                      .
T Consensus       201 ~  201 (416)
T 2pm9_A          201 V  201 (416)
T ss_dssp             E
T ss_pred             c
Confidence            3

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=87.19  E-value=15  Score=39.18  Aligned_cols=117  Identities=11%  Similarity=0.063  Sum_probs=71.7

Q ss_pred             ceEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEECCCC
Q 011333           85 PYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNM  164 (488)
Q Consensus        85 P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~N~  164 (488)
                      -..++++++|.++++-...+.|+.++...+.  .+..+.+.                -..-..|++.++|+.+++=...+
T Consensus       433 v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~--~~~~~~~h----------------~~~v~~~~~s~~~~~l~s~s~D~  494 (694)
T 3dm0_A          433 VEDVVLSSDGQFALSGSWDGELRLWDLAAGV--STRRFVGH----------------TKDVLSVAFSLDNRQIVSASRDR  494 (694)
T ss_dssp             EEEEEECTTSSEEEEEETTSEEEEEETTTTE--EEEEEECC----------------SSCEEEEEECTTSSCEEEEETTS
T ss_pred             EEEEEECCCCCEEEEEeCCCcEEEEECCCCc--ceeEEeCC----------------CCCEEEEEEeCCCCEEEEEeCCC
Confidence            4678899999988887778899999987532  23333332                11246789999998777766778


Q ss_pred             EEEEEc-CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCC--eEEEEECCCCeEEEEEcCCCce
Q 011333          165 AIRKIS-DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSC--SLLVIDRGNRAIREIQLHFDDC  233 (488)
Q Consensus       165 rIrkid-~gg-VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G--~LYVaD~gN~rIrkI~~~g~~~  233 (488)
                      .|+.++ .+. ..++.....    +         .-..-.++++ .+++  .++++-...+.|+.+++....+
T Consensus       495 ~i~iwd~~~~~~~~~~~~~~----~---------h~~~v~~~~~-~~~~~~~~l~s~s~d~~v~vwd~~~~~~  553 (694)
T 3dm0_A          495 TIKLWNTLGECKYTISEGGE----G---------HRDWVSCVRF-SPNTLQPTIVSASWDKTVKVWNLSNCKL  553 (694)
T ss_dssp             CEEEECTTSCEEEEECSSTT----S---------CSSCEEEEEE-CSCSSSCEEEEEETTSCEEEEETTTCCE
T ss_pred             EEEEEECCCCcceeeccCCC----C---------CCCcEEEEEE-eCCCCcceEEEEeCCCeEEEEECCCCcE
Confidence            899998 333 233322110    0         0112345663 3333  4555555667788777765443

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=86.92  E-value=18  Score=38.28  Aligned_cols=116  Identities=7%  Similarity=0.016  Sum_probs=63.1

Q ss_pred             ceEEEEccCCc-EEEEECCC----CeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcC--CCcEE
Q 011333           85 PYSVEVLPGGE-LLILDSAN----SNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDD--RGNIY  157 (488)
Q Consensus        85 P~GIaVd~dG~-LYVaD~~n----~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~--dG~LY  157 (488)
                      +..+++++||. |+++....    ..|+.++..++.  ....+....  ..+         .......+++.+  +|.++
T Consensus       260 ~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~--~~~~~~~~~--~~~---------~~~~~~~~~~sp~~dg~~l  326 (706)
T 2z3z_A          260 LTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGR--FVRTLFVET--DKH---------YVEPLHPLTFLPGSNNQFI  326 (706)
T ss_dssp             EEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCC--EEEEEEEEE--CSS---------CCCCCSCCEECTTCSSEEE
T ss_pred             EeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCc--eeeEEEEcc--CCC---------eECccCCceeecCCCCEEE
Confidence            45788899998 66543221    388999987631  333333210  000         012235688888  88744


Q ss_pred             E-EEC-CCCEEEEEc-CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCe-eEEECCCC-eEEEEECCCC----eEEEEE
Q 011333          158 I-ADT-MNMAIRKIS-DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFD-VVYIGSSC-SLLVIDRGNR----AIREIQ  227 (488)
Q Consensus       158 V-AD~-~N~rIrkid-~gg-VttIaGg~~g~~~g~~dG~~~~a~f~~P~g-Ia~vd~~G-~LYVaD~gN~----rIrkI~  227 (488)
                      + ++. +..+|..++ +++ +..+.++..                 ...+ ++ ++++| .||++....+    .|+.++
T Consensus       327 ~~~~~~g~~~l~~~~~~~~~~~~l~~~~~-----------------~v~~~~~-~spdg~~l~~~~~~~~~~~~~l~~~d  388 (706)
T 2z3z_A          327 WQSRRDGWNHLYLYDTTGRLIRQVTKGEW-----------------EVTNFAG-FDPKGTRLYFESTEASPLERHFYCID  388 (706)
T ss_dssp             EEECTTSSCEEEEEETTSCEEEECCCSSS-----------------CEEEEEE-ECTTSSEEEEEESSSCTTCBEEEEEE
T ss_pred             EEEccCCccEEEEEECCCCEEEecCCCCe-----------------EEEeeeE-EcCCCCEEEEEecCCCCceEEEEEEE
Confidence            4 433 245777777 555 444433211                 0122 45 44444 5777766544    788888


Q ss_pred             cCCC
Q 011333          228 LHFD  231 (488)
Q Consensus       228 ~~g~  231 (488)
                      ..+.
T Consensus       389 ~~~~  392 (706)
T 2z3z_A          389 IKGG  392 (706)
T ss_dssp             TTCC
T ss_pred             cCCC
Confidence            7653

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=86.67  E-value=11  Score=36.16  Aligned_cols=111  Identities=14%  Similarity=0.183  Sum_probs=68.5

Q ss_pred             eEEEE-----cc-CCcEEEEECCCCeEEEEeCCCCc----cccc-EEEecCCCCccccCCCcccccccCCcceEEEcCCC
Q 011333           86 YSVEV-----LP-GGELLILDSANSNLYRISSSLSL----YSRP-KLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRG  154 (488)
Q Consensus        86 ~GIaV-----d~-dG~LYVaD~~n~rI~kid~~g~~----~g~i-~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG  154 (488)
                      ..|++     .+ +|.++++-...+.|+.++.....    .+.. ..+.|       +         -..-..|++.+++
T Consensus        25 ~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~-------h---------~~~V~~~~~~~~~   88 (343)
T 2xzm_R           25 TSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTG-------H---------NHFVSDLALSQEN   88 (343)
T ss_dssp             EEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECC-------C---------SSCEEEEEECSST
T ss_pred             hheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhcc-------C---------CCceEEEEECCCC
Confidence            45555     44 78888877777788888765311    0111 11211       1         1224578999999


Q ss_pred             cEEEEECCCCEEEEEc--CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCC
Q 011333          155 NIYIADTMNMAIRKIS--DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHF  230 (488)
Q Consensus       155 ~LYVAD~~N~rIrkid--~gg-VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g  230 (488)
                      .+.++-...+.|+.++  .+. +.++.+..                 ....+|+ +.+++..+++-...+.|+.++..+
T Consensus        89 ~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~-----------------~~v~~v~-~sp~~~~l~s~~~d~~i~~wd~~~  149 (343)
T 2xzm_R           89 CFAISSSWDKTLRLWDLRTGTTYKRFVGHQ-----------------SEVYSVA-FSPDNRQILSAGAEREIKLWNILG  149 (343)
T ss_dssp             TEEEEEETTSEEEEEETTSSCEEEEEECCC-----------------SCEEEEE-ECSSTTEEEEEETTSCEEEEESSS
T ss_pred             CEEEEEcCCCcEEEEECCCCcEEEEEcCCC-----------------CcEEEEE-ECCCCCEEEEEcCCCEEEEEeccC
Confidence            9888877788999998  333 44444321                 1235677 466666666666678888888764

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=86.49  E-value=12  Score=38.22  Aligned_cols=120  Identities=7%  Similarity=-0.002  Sum_probs=70.3

Q ss_pred             CceEEEEccCCc-EEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCC-CcEEEEEC
Q 011333           84 EPYSVEVLPGGE-LLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDR-GNIYIADT  161 (488)
Q Consensus        84 ~P~GIaVd~dG~-LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~d-G~LYVAD~  161 (488)
                      ....+++.++|. ++++-..++.|+.++.....  .+..+.+.    .+         .-.....+++.++ |+++++-.
T Consensus       162 ~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~--~~~~~~~~----~~---------~~~~v~~~~~~~~~~~~l~~~~  226 (615)
T 1pgu_A          162 RINACHLKQSRPMRSMTVGDDGSVVFYQGPPFK--FSASDRTH----HK---------QGSFVRDVEFSPDSGEFVITVG  226 (615)
T ss_dssp             CEEEEEECSSSSCEEEEEETTTEEEEEETTTBE--EEEEECSS----SC---------TTCCEEEEEECSTTCCEEEEEE
T ss_pred             cEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcc--eeeeeccc----CC---------CCceEEEEEECCCCCCEEEEEe
Confidence            456788889886 67776677899999976421  22222221    00         0013568999999 98777666


Q ss_pred             CCCEEEEEc--CCCc-EEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCce
Q 011333          162 MNMAIRKIS--DSGV-TTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDC  233 (488)
Q Consensus       162 ~N~rIrkid--~ggV-ttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g~~~  233 (488)
                      .++.|+.++  .+.. .++......             .-....++++ . ++.++++-..++.|+.++.....+
T Consensus       227 ~dg~i~vwd~~~~~~~~~~~~~~~~-------------~~~~v~~~~~-~-~~~~l~~~~~d~~i~~wd~~~~~~  286 (615)
T 1pgu_A          227 SDRKISCFDGKSGEFLKYIEDDQEP-------------VQGGIFALSW-L-DSQKFATVGADATIRVWDVTTSKC  286 (615)
T ss_dssp             TTCCEEEEETTTCCEEEECCBTTBC-------------CCSCEEEEEE-S-SSSEEEEEETTSEEEEEETTTTEE
T ss_pred             CCCeEEEEECCCCCEeEEecccccc-------------cCCceEEEEE-c-CCCEEEEEcCCCcEEEEECCCCcE
Confidence            678899998  3443 333110000             0112356663 4 666666666667788887764433

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=86.42  E-value=5  Score=41.10  Aligned_cols=110  Identities=6%  Similarity=0.096  Sum_probs=69.8

Q ss_pred             CceEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcC----------C
Q 011333           84 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDD----------R  153 (488)
Q Consensus        84 ~P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~----------d  153 (488)
                      ....++++++|.++++-..++.|+.++.....  .+..+.+.      +         -...+.+++.+          +
T Consensus       490 ~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~--~~~~~~~~------h---------~~~v~~~~~sp~~~~~~~~~~~  552 (615)
T 1pgu_A          490 KPSYISISPSETYIAAGDVMGKILLYDLQSRE--VKTSRWAF------R---------TSKINAISWKPAEKGANEEEIE  552 (615)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTTTE--EEECCSCC------C---------SSCEEEEEECCCC------CCS
T ss_pred             ceEEEEECCCCCEEEEcCCCCeEEEeeCCCCc--ceeEeecC------C---------CCceeEEEEcCccccccccccC
Confidence            56789999999988877778899999987421  11111110      1         23467899998          8


Q ss_pred             CcEEEEECCCCEEEEEc--CC-C-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcC
Q 011333          154 GNIYIADTMNMAIRKIS--DS-G-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLH  229 (488)
Q Consensus       154 G~LYVAD~~N~rIrkid--~g-g-VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~  229 (488)
                      |.++++=...+.|+.++  .+ . +.++.+.                 -....+|++ .+++. +++-...+.|+.+++.
T Consensus       553 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h-----------------~~~v~~l~~-s~~~~-l~s~~~d~~v~iw~~~  613 (615)
T 1pgu_A          553 EDLVATGSLDTNIFIYSVKRPMKIIKALNAH-----------------KDGVNNLLW-ETPST-LVSSGADACIKRWNVV  613 (615)
T ss_dssp             CCEEEEEETTSCEEEEESSCTTCCEEETTSS-----------------TTCEEEEEE-EETTE-EEEEETTSCEEEEEEC
T ss_pred             CCEEEEEcCCCcEEEEECCCCceechhhhcC-----------------ccceEEEEE-cCCCC-eEEecCCceEEEEeee
Confidence            98777766678888888  33 2 2222111                 113467884 45666 5555566778777754

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=86.15  E-value=18  Score=38.47  Aligned_cols=118  Identities=11%  Similarity=0.084  Sum_probs=71.8

Q ss_pred             ceEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCC--cEEEEECC
Q 011333           85 PYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRG--NIYIADTM  162 (488)
Q Consensus        85 P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG--~LYVAD~~  162 (488)
                      -..++++++|.++++-...+.|+.++..+.   ....+...   ..++         -..-..+++.+++  .++++=..
T Consensus       475 v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~---~~~~~~~~---~~~h---------~~~v~~~~~~~~~~~~~l~s~s~  539 (694)
T 3dm0_A          475 VLSVAFSLDNRQIVSASRDRTIKLWNTLGE---CKYTISEG---GEGH---------RDWVSCVRFSPNTLQPTIVSASW  539 (694)
T ss_dssp             EEEEEECTTSSCEEEEETTSCEEEECTTSC---EEEEECSS---TTSC---------SSCEEEEEECSCSSSCEEEEEET
T ss_pred             EEEEEEeCCCCEEEEEeCCCEEEEEECCCC---cceeeccC---CCCC---------CCcEEEEEEeCCCCcceEEEEeC
Confidence            457778888887777666778888876531   12222111   1122         1224568888776  45666556


Q ss_pred             CCEEEEEc--CCCc-EEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCceEE
Q 011333          163 NMAIRKIS--DSGV-TTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCAY  235 (488)
Q Consensus       163 N~rIrkid--~ggV-ttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g~~~~~  235 (488)
                      .+.|+.++  .+.. .++.+..                 ....+|+ +.++|+++++-...+.|+.+++....+..
T Consensus       540 d~~v~vwd~~~~~~~~~~~~h~-----------------~~v~~v~-~spdg~~l~sg~~Dg~i~iwd~~~~~~~~  597 (694)
T 3dm0_A          540 DKTVKVWNLSNCKLRSTLAGHT-----------------GYVSTVA-VSPDGSLCASGGKDGVVLLWDLAEGKKLY  597 (694)
T ss_dssp             TSCEEEEETTTCCEEEEECCCS-----------------SCEEEEE-ECTTSSEEEEEETTSBCEEEETTTTEEEE
T ss_pred             CCeEEEEECCCCcEEEEEcCCC-----------------CCEEEEE-EeCCCCEEEEEeCCCeEEEEECCCCceEE
Confidence            77888888  3333 3333211                 1245677 57788888887778899999887655443

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=85.92  E-value=22  Score=37.84  Aligned_cols=82  Identities=13%  Similarity=0.158  Sum_probs=44.3

Q ss_pred             CceEEEEccCCc-EEEEECCCC-----eEEEEeCCCCcccccEEEecCCCCcc-cc---CCCcccc--ccc---CCcceE
Q 011333           84 EPYSVEVLPGGE-LLILDSANS-----NLYRISSSLSLYSRPKLVAGSAEGYS-GH---VDGKPRE--ARM---NHPKGL  148 (488)
Q Consensus        84 ~P~GIaVd~dG~-LYVaD~~n~-----rI~kid~~g~~~g~i~tvaG~~~G~~-G~---~dG~a~~--a~L---n~P~GI  148 (488)
                      .+..+++++||. |+++....+     .|+.++.++   +....+........ |.   .++....  .++   .....+
T Consensus        38 ~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  114 (741)
T 2ecf_A           38 TLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGS---GQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDY  114 (741)
T ss_dssp             CCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTT---CCEEEEECGGGTC--------------------CCEESCCC
T ss_pred             CCCCceEecCCCEEEEEeccCCCCcccEEEEEECCC---CceeEccchhhcccccccccchhhhhhhhhhhccccCccee
Confidence            577889999998 555554234     899999876   33333332110000 00   0000000  000   124678


Q ss_pred             EEcCCCc-EEEEECCCCEEEEEc
Q 011333          149 TVDDRGN-IYIADTMNMAIRKIS  170 (488)
Q Consensus       149 AvD~dG~-LYVAD~~N~rIrkid  170 (488)
                      ++++||. |+++..  ..|+.++
T Consensus       115 ~~SpDg~~l~~~~~--~~i~~~d  135 (741)
T 2ecf_A          115 QWSPDAQRLLFPLG--GELYLYD  135 (741)
T ss_dssp             EECTTSSEEEEEET--TEEEEEE
T ss_pred             EECCCCCEEEEEeC--CcEEEEE
Confidence            9999997 555553  7888888

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=85.34  E-value=13  Score=36.15  Aligned_cols=125  Identities=10%  Similarity=0.018  Sum_probs=73.0

Q ss_pred             CceEEEEccCCcEEEEECCCCe-EEEEeCCCCcccccEEEe-cCCCCccccCCCcccccccCCcceEEEcCCCcEEEEEC
Q 011333           84 EPYSVEVLPGGELLILDSANSN-LYRISSSLSLYSRPKLVA-GSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADT  161 (488)
Q Consensus        84 ~P~GIaVd~dG~LYVaD~~n~r-I~kid~~g~~~g~i~tva-G~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~  161 (488)
                      .-..|+++++|.++++-...+. |+.++...+.  .+..+. |.      +         -..-..|+++++|.++++=.
T Consensus       197 ~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~--~~~~~~~g~------h---------~~~v~~~~~s~~~~~l~s~s  259 (355)
T 3vu4_A          197 PIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGV--LVREFRRGL------D---------RADVVDMKWSTDGSKLAVVS  259 (355)
T ss_dssp             CEEEEEECTTSSEEEEEETTCSEEEEEETTTCC--EEEEEECTT------C---------CSCEEEEEECTTSCEEEEEE
T ss_pred             ceEEEEECCCCCEEEEEeCCCCEEEEEECCCCc--EEEEEEcCC------C---------CCcEEEEEECCCCCEEEEEE
Confidence            3478899999998888777787 9999987522  233333 21      1         12356899999999888777


Q ss_pred             CCCEEEEEc-C-CC---cEEEeCCccCCCCCCCCC--CcccccCC----C-CCeeEEECCCCeEEEEECCCCeEEEEEcC
Q 011333          162 MNMAIRKIS-D-SG---VTTIAGGKWGRGGGHVDG--PSEDAKFS----N-DFDVVYIGSSCSLLVIDRGNRAIREIQLH  229 (488)
Q Consensus       162 ~N~rIrkid-~-gg---VttIaGg~~g~~~g~~dG--~~~~a~f~----~-P~gIa~vd~~G~LYVaD~gN~rIrkI~~~  229 (488)
                      ..+.|+.++ . +.   ...+.+.-..   .+-..  ......+.    . ...++ ..++|+.+++-..++.+++++..
T Consensus       260 ~d~~v~iw~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~a-~~~d~~~l~~~~~dg~~~~~~~~  335 (355)
T 3vu4_A          260 DKWTLHVFEIFNDQDNKRHALKGWINM---KYFQSEWSLCNFKLSVDKHVRGCKIA-WISESSLVVVWPHTRMIETFKVV  335 (355)
T ss_dssp             TTCEEEEEESSCCSCCCSEETTTTEEC---CCCCCSSCSEEEECCCCTTCCCCEEE-ESSSSEEEEEETTTTEEEEEEEE
T ss_pred             CCCEEEEEEccCCCCcccccccceeec---cccccccceeEEEeccCCCCCceEEE-EeCCCCEEEEEeCCCeEEEEEEE
Confidence            788899888 2 21   1211110000   00000  00000011    1 13455 67788877777778888887654

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=85.32  E-value=6.3  Score=41.01  Aligned_cols=114  Identities=10%  Similarity=-0.030  Sum_probs=63.4

Q ss_pred             eEEEEccCCcEEE-E--ECCC-CeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCc-EEEEE
Q 011333           86 YSVEVLPGGELLI-L--DSAN-SNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-IYIAD  160 (488)
Q Consensus        86 ~GIaVd~dG~LYV-a--D~~n-~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~-LYVAD  160 (488)
                      ..++++|||..++ +  |.++ ..|++++.++   +....+.+..                .....+++.+||. |+.++
T Consensus       153 ~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~---g~~~~l~~~~----------------~~~~~~~~SpDG~~l~~~~  213 (582)
T 3o4h_A          153 FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSS---GGLRVFDSGE----------------GSFSSASISPGMKVTAGLE  213 (582)
T ss_dssp             CEEEEEEETTEEEEEEEEETTEEEEEEEETTT---CCCEEECCSS----------------CEEEEEEECTTSCEEEEEE
T ss_pred             ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCC---CCceEeecCC----------------CccccceECCCCCEEEEcc
Confidence            5778888888544 2  2222 5688888765   3455553321                1136789999997 55455


Q ss_pred             CCC-CEEEEEc-CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEc
Q 011333          161 TMN-MAIRKIS-DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQL  228 (488)
Q Consensus       161 ~~N-~rIrkid-~gg-VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~  228 (488)
                      ..+ .+|++++ +++ .. +..+...        ......-..+...+ .+++|.||++-...+.++.+..
T Consensus       214 ~~~~~~i~~~d~~~~~~~-~~~~~~~--------~~~~~~~~~~~~~~-~spdg~~~~~~~~~g~~~l~~~  274 (582)
T 3o4h_A          214 TAREARLVTVDPRDGSVE-DLELPSK--------DFSSYRPTAITWLG-YLPDGRLAVVARREGRSAVFID  274 (582)
T ss_dssp             CSSCEEEEEECTTTCCEE-ECCCSCS--------HHHHHCCSEEEEEE-ECTTSCEEEEEEETTEEEEEET
T ss_pred             CCCeeEEEEEcCCCCcEE-EccCCCc--------Chhhhhhcccccee-EcCCCcEEEEEEcCCcEEEEEE
Confidence            432 3899998 444 44 3322100        00000000112233 4567788887777778877777

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=85.13  E-value=30  Score=36.25  Aligned_cols=121  Identities=8%  Similarity=0.072  Sum_probs=63.0

Q ss_pred             eEEEEccCCc-EEEEECC-------CCeEEEEeCC-CCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcE
Q 011333           86 YSVEVLPGGE-LLILDSA-------NSNLYRISSS-LSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNI  156 (488)
Q Consensus        86 ~GIaVd~dG~-LYVaD~~-------n~rI~kid~~-g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~L  156 (488)
                      ..++++|||. |+++...       ...|+.++.+ .+..+....+....               -.....+++.+||.|
T Consensus       191 ~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~---------------~~~~~~~~~spdg~l  255 (662)
T 3azo_A          191 TGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGP---------------EEAIAQAEWAPDGSL  255 (662)
T ss_dssp             CCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEET---------------TBCEEEEEECTTSCE
T ss_pred             cCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCC---------------CceEcceEECCCCeE
Confidence            4567889997 5444322       2578888877 32111344443310               113567889999987


Q ss_pred             EEEECCCC--EEEEEc--CCCcEEEeCCccCCCCCCCCCCcccccCC-CCCeeEEECCCCeEEEEEC-CCCeEEEEEcCC
Q 011333          157 YIADTMNM--AIRKIS--DSGVTTIAGGKWGRGGGHVDGPSEDAKFS-NDFDVVYIGSSCSLLVIDR-GNRAIREIQLHF  230 (488)
Q Consensus       157 YVAD~~N~--rIrkid--~ggVttIaGg~~g~~~g~~dG~~~~a~f~-~P~gIa~vd~~G~LYVaD~-gN~rIrkI~~~g  230 (488)
                      |++-..+.  +|.+++  .+....+.......         ....+. ....++ +.+++.++++-. +..+|+.+++.+
T Consensus       256 ~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~---------~~p~w~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~d~~~  325 (662)
T 3azo_A          256 IVATDRTGWWNLHRVDPATGAATQLCRREEEF---------AGPLWTPGMRWFA-PLANGLIAVVHGKGAAVLGILDPES  325 (662)
T ss_dssp             EEEECTTSSCEEEEECTTTCCEEESSCCSSBS---------SCCCCSTTCCSEE-ECTTSCEEEEEBSSSCEEEEEETTT
T ss_pred             EEEECCCCCeEEEEEECCCCceeecccccccc---------cCccccccCceEe-EeCCCEEEEEEEcCccEEEEEECCC
Confidence            77654444  888888  33344443321110         000111 124566 344555554433 445667777664


Q ss_pred             C
Q 011333          231 D  231 (488)
Q Consensus       231 ~  231 (488)
                      .
T Consensus       326 ~  326 (662)
T 3azo_A          326 G  326 (662)
T ss_dssp             T
T ss_pred             C
Confidence            3

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=85.11  E-value=0.48  Score=45.84  Aligned_cols=69  Identities=9%  Similarity=0.010  Sum_probs=42.6

Q ss_pred             eEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEECCCCE
Q 011333           86 YSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNMA  165 (488)
Q Consensus        86 ~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~N~r  165 (488)
                      ..++++++|.++++-..++.|+.++..+.   ....+ ..   ..++         -..-..|++.++|+++++=...+.
T Consensus        15 ~~~~~s~~g~~l~~~~~d~~i~iw~~~~~---~~~~~-~~---~~~h---------~~~v~~~~~s~~~~~l~s~s~d~~   78 (377)
T 3dwl_C           15 YEHAFNSQRTEFVTTTATNQVELYEQDGN---GWKHA-RT---FSDH---------DKIVTCVDWAPKSNRIVTCSQDRN   78 (377)
T ss_dssp             SCCEECSSSSEEECCCSSSCBCEEEEETT---EEEEC-CC---BCCC---------SSCEEEEEECTTTCCEEEEETTSS
T ss_pred             EEEEECCCCCEEEEecCCCEEEEEEccCC---ceEEE-EE---EecC---------CceEEEEEEeCCCCEEEEEeCCCe
Confidence            46788899998777666778888877642   11111 11   1111         123467899999986666555677


Q ss_pred             EEEEc
Q 011333          166 IRKIS  170 (488)
Q Consensus       166 Irkid  170 (488)
                      |+.++
T Consensus        79 v~vwd   83 (377)
T 3dwl_C           79 AYVYE   83 (377)
T ss_dssp             EEEC-
T ss_pred             EEEEE
Confidence            88777

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=84.94  E-value=25  Score=32.75  Aligned_cols=68  Identities=9%  Similarity=-0.019  Sum_probs=48.6

Q ss_pred             CceEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEE--cCCCcEEEEEC
Q 011333           84 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTV--DDRGNIYIADT  161 (488)
Q Consensus        84 ~P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAv--D~dG~LYVAD~  161 (488)
                      ....+++.++|.++++-..++.|+.++...   +....+.+.                -.....|++  +++|+++++-.
T Consensus        88 ~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~---~~~~~~~~~----------------~~~v~~~~~~~~~~~~~l~~~~  148 (368)
T 3mmy_A           88 PVLDVCWSDDGSKVFTASCDKTAKMWDLSS---NQAIQIAQH----------------DAPVKTIHWIKAPNYSCVMTGS  148 (368)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEETTT---TEEEEEEEC----------------SSCEEEEEEEECSSCEEEEEEE
T ss_pred             CEEEEEECcCCCEEEEEcCCCcEEEEEcCC---CCceeeccc----------------cCceEEEEEEeCCCCCEEEEcc
Confidence            457889999998777766778999999875   333333332                122467888  88888777666


Q ss_pred             CCCEEEEEc
Q 011333          162 MNMAIRKIS  170 (488)
Q Consensus       162 ~N~rIrkid  170 (488)
                      ..+.|+.++
T Consensus       149 ~dg~i~vwd  157 (368)
T 3mmy_A          149 WDKTLKFWD  157 (368)
T ss_dssp             TTSEEEEEC
T ss_pred             CCCcEEEEE
Confidence            678899998

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=84.66  E-value=26  Score=32.81  Aligned_cols=118  Identities=12%  Similarity=0.082  Sum_probs=69.0

Q ss_pred             CceEEEEccC--CcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcC---------
Q 011333           84 EPYSVEVLPG--GELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDD---------  152 (488)
Q Consensus        84 ~P~GIaVd~d--G~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~---------  152 (488)
                      ....+++.++  |.++++-..++.|+.++...........+.+.                -.....+++.+         
T Consensus       103 ~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~----------------~~~v~~~~~~~~~~~~~~~~  166 (379)
T 3jrp_A          103 SVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAH----------------AIGVNSASWAPATIEEDGEH  166 (379)
T ss_dssp             CEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECC----------------TTCEEEEEECCCC-------
T ss_pred             ceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCC----------------CCceEEEEEcCccccccccc
Confidence            4577888887  88777766778899988764321111222121                11245677777         


Q ss_pred             ----CCcEEEEECCCCEEEEEc--CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCC---CeEEEEECCCCe
Q 011333          153 ----RGNIYIADTMNMAIRKIS--DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSS---CSLLVIDRGNRA  222 (488)
Q Consensus       153 ----dG~LYVAD~~N~rIrkid--~gg-VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~---G~LYVaD~gN~r  222 (488)
                          ++.++++-...+.|+.++  .+. ...+.....+             .-....+++ +.++   +.++++-...+.
T Consensus       167 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-------------h~~~v~~~~-~sp~~~~~~~l~s~~~dg~  232 (379)
T 3jrp_A          167 NGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEG-------------HSDWVRDVA-WSPTVLLRSYLASVSQDRT  232 (379)
T ss_dssp             ---CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECC-------------CSSCEEEEE-ECCCCSSSEEEEEEETTSC
T ss_pred             cCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEec-------------ccCcEeEEE-ECCCCCCCCeEEEEeCCCE
Confidence                577777766677888887  332 1111110000             011345777 4555   777777777788


Q ss_pred             EEEEEcCCC
Q 011333          223 IREIQLHFD  231 (488)
Q Consensus       223 IrkI~~~g~  231 (488)
                      |+.++....
T Consensus       233 i~iwd~~~~  241 (379)
T 3jrp_A          233 CIIWTQDNE  241 (379)
T ss_dssp             EEEEEESST
T ss_pred             EEEEeCCCC
Confidence            888887753

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=84.57  E-value=16  Score=35.38  Aligned_cols=70  Identities=13%  Similarity=0.124  Sum_probs=48.9

Q ss_pred             cceEEEcCCCcEEEEECCCCE-EEEEc--CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCC
Q 011333          145 PKGLTVDDRGNIYIADTMNMA-IRKIS--DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGN  220 (488)
Q Consensus       145 P~GIAvD~dG~LYVAD~~N~r-Irkid--~gg-VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN  220 (488)
                      -+.|+++++|.++++=...+. |+.++  .+. +.++..+..               -....+|+ ..++|.++++-...
T Consensus       198 v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h---------------~~~v~~~~-~s~~~~~l~s~s~d  261 (355)
T 3vu4_A          198 IKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLD---------------RADVVDMK-WSTDGSKLAVVSDK  261 (355)
T ss_dssp             EEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTC---------------CSCEEEEE-ECTTSCEEEEEETT
T ss_pred             eEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCC---------------CCcEEEEE-ECCCCCEEEEEECC
Confidence            468999999998887766776 99998  344 455541100               01346788 57788888877778


Q ss_pred             CeEEEEEcCC
Q 011333          221 RAIREIQLHF  230 (488)
Q Consensus       221 ~rIrkI~~~g  230 (488)
                      +.|+.+++..
T Consensus       262 ~~v~iw~~~~  271 (355)
T 3vu4_A          262 WTLHVFEIFN  271 (355)
T ss_dssp             CEEEEEESSC
T ss_pred             CEEEEEEccC
Confidence            8999998764

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=84.35  E-value=7.1  Score=37.42  Aligned_cols=115  Identities=11%  Similarity=-0.013  Sum_probs=66.9

Q ss_pred             ceEEEEccCCcEEEEECCCCeEEEEeCCCCccccc-EEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEECCC
Q 011333           85 PYSVEVLPGGELLILDSANSNLYRISSSLSLYSRP-KLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMN  163 (488)
Q Consensus        85 P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i-~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~N  163 (488)
                      ...++++++|.++++-..++.|+.++.....  .+ ..+.+      ++         -...+.|++.++|..+++=..+
T Consensus       173 i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~--~~~~~~~~------~h---------~~~v~~l~fs~~g~~l~s~~~~  235 (343)
T 3lrv_A          173 YSSGVLHKDSLLLALYSPDGILDVYNLSSPD--QASSRFPV------DE---------EAKIKEVKFADNGYWMVVECDQ  235 (343)
T ss_dssp             CCEEEECTTSCEEEEECTTSCEEEEESSCTT--SCCEECCC------CT---------TSCEEEEEECTTSSEEEEEESS
T ss_pred             eEEEEECCCCCEEEEEcCCCEEEEEECCCCC--CCccEEec------cC---------CCCEEEEEEeCCCCEEEEEeCC
Confidence            5688899999988887778899999887532  12 22322      01         1235689999999866554433


Q ss_pred             CEEEEEc--CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECC-CCeEEEEEcCC
Q 011333          164 MAIRKIS--DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRG-NRAIREIQLHF  230 (488)
Q Consensus       164 ~rIrkid--~gg-VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~g-N~rIrkI~~~g  230 (488)
                       .|+.+|  .+. +.++..-.        +   ....+.. ..++ .+++|.++++-.+ .+.|+.++...
T Consensus       236 -~v~iwd~~~~~~~~~~~~~~--------~---~~~~~~~-~~~~-~~~~g~~l~~~s~~d~~i~v~~~~~  292 (343)
T 3lrv_A          236 -TVVCFDLRKDVGTLAYPTYT--------I---PEFKTGT-VTYD-IDDSGKNMIAYSNESNSLTIYKFDK  292 (343)
T ss_dssp             -BEEEEETTSSTTCBSSCCCB--------C--------CC-EEEE-ECTTSSEEEEEETTTTEEEEEEECT
T ss_pred             -eEEEEEcCCCCcceeecccc--------c---ccccccc-eEEE-ECCCCCEEEEecCCCCcEEEEEEcc
Confidence             889888  222 22221100        0   0001111 3577 5777776666444 67788777643

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=84.17  E-value=15  Score=35.19  Aligned_cols=111  Identities=11%  Similarity=0.109  Sum_probs=65.9

Q ss_pred             ceEEEEccCCcEEEEECCCCeEEEEeCC-CCc-ccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEECC
Q 011333           85 PYSVEVLPGGELLILDSANSNLYRISSS-LSL-YSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTM  162 (488)
Q Consensus        85 P~GIaVd~dG~LYVaD~~n~rI~kid~~-g~~-~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~  162 (488)
                      -..++++++|.++++-...+.|+.++.. .+. ...+.++.+.                -..-..|++.++|+++++=..
T Consensus       110 V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h----------------~~~v~~v~~~p~~~~l~s~s~  173 (330)
T 2hes_X          110 VKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEH----------------SQDVKHVIWHPSEALLASSSY  173 (330)
T ss_dssp             EEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCC----------------SSCEEEEEECSSSSEEEEEET
T ss_pred             EEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccC----------------CCceEEEEECCCCCEEEEEcC
Confidence            4678899999988877777889999873 211 0112222221                123467899999988887777


Q ss_pred             CCEEEEEc--CCC---cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCC--CeEEEEECCCCeEEEEEcC
Q 011333          163 NMAIRKIS--DSG---VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSS--CSLLVIDRGNRAIREIQLH  229 (488)
Q Consensus       163 N~rIrkid--~gg---VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~--G~LYVaD~gN~rIrkI~~~  229 (488)
                      .+.|+.++  .+.   +.++.+..                 ..-++++ +.++  +.++++-...+.|+.+++.
T Consensus       174 D~~i~iW~~~~~~~~~~~~~~~h~-----------------~~v~~~~-~~~~~~~~~l~s~s~D~~v~iw~~~  229 (330)
T 2hes_X          174 DDTVRIWKDYDDDWECVAVLNGHE-----------------GTVWSSD-FDKTEGVFRLCSGSDDSTVRVWKYM  229 (330)
T ss_dssp             TSCEEEEEEETTEEEEEEEECCCS-----------------SCEEEEE-ECCSSSSCEEEEEETTSCEEEEEEE
T ss_pred             CCeEEEEECCCCCeeEEEEccCCC-----------------CcEEEEE-ecCCCCeeEEEEEeCCCeEEEEEec
Confidence            78888887  332   23332211                 1234566 3444  4455555556677776654

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=83.94  E-value=13  Score=35.67  Aligned_cols=112  Identities=19%  Similarity=0.130  Sum_probs=67.1

Q ss_pred             ceEEEEccCCcEEEEECCCCeEEEEeCCCCcc----cc-cEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEE
Q 011333           85 PYSVEVLPGGELLILDSANSNLYRISSSLSLY----SR-PKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIA  159 (488)
Q Consensus        85 P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~----g~-i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVA  159 (488)
                      -..|++.++|.++++-...+.|+.++......    .. +.++.|       +         -..-..|++.++|+++++
T Consensus        61 v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~-------h---------~~~V~~v~~sp~g~~las  124 (330)
T 2hes_X           61 IRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEG-------H---------ENEVKGVAWSNDGYYLAT  124 (330)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC--------------------CEEEEEECTTSCEEEE
T ss_pred             EEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcC-------C---------CCcEEEEEECCCCCEEEE
Confidence            46788999999888877778898888742110    01 111211       1         123467999999987777


Q ss_pred             ECCCCEEEEEcC--CC-----cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCC
Q 011333          160 DTMNMAIRKISD--SG-----VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHF  230 (488)
Q Consensus       160 D~~N~rIrkid~--gg-----VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g  230 (488)
                      =...+.|+.++-  .+     +.++.+.                 -....+|+ ..+++.++++-...+.|+.++...
T Consensus       125 ~s~D~~v~iwd~~~~~~~~~~~~~~~~h-----------------~~~v~~v~-~~p~~~~l~s~s~D~~i~iW~~~~  184 (330)
T 2hes_X          125 CSRDKSVWIWETDESGEEYECISVLQEH-----------------SQDVKHVI-WHPSEALLASSSYDDTVRIWKDYD  184 (330)
T ss_dssp             EETTSCEEEEECCTTCCCCEEEEEECCC-----------------SSCEEEEE-ECSSSSEEEEEETTSCEEEEEEET
T ss_pred             EeCCCEEEEEeccCCCCCeEEEEEeccC-----------------CCceEEEE-ECCCCCEEEEEcCCCeEEEEECCC
Confidence            666788888872  21     1222221                 01235677 466777777777777888877653

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=83.40  E-value=15  Score=39.87  Aligned_cols=115  Identities=14%  Similarity=0.129  Sum_probs=72.1

Q ss_pred             ceEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEECCCC
Q 011333           85 PYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNM  164 (488)
Q Consensus        85 P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~N~  164 (488)
                      ...|..|.+|+|||+...++-|.++++..   +++..+...  +..+          -+.+..|+.|.+|+|||+-.  .
T Consensus       474 i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~---~~~~~~~~~--~~~~----------~~~~~~i~~d~~g~lWigt~--~  536 (758)
T 3ott_A          474 INQIIPDNEGNVWVLLYNNKGIDKINPRT---REVTKLFAD--ELTG----------EKSPNYLLCDEDGLLWVGFH--G  536 (758)
T ss_dssp             EEEEEECTTSCEEEEETTCSSEEEEETTT---TEEEEECTT--TSCG----------GGCEEEEEECTTSCEEEEET--T
T ss_pred             eeeEEEcCCCCEEEEccCCCCcEEEeCCC---CceEEecCC--CcCC----------CcccceEEECCCCCEEEEec--C
Confidence            56788899999999444446799999875   344444211  1000          13467899999999999963  5


Q ss_pred             EEEEEcC--CCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCceE
Q 011333          165 AIRKISD--SGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCA  234 (488)
Q Consensus       165 rIrkid~--ggVttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g~~~~  234 (488)
                      -|.+++.  +.+..+.  .        +|.+    -+...+|+ .+ +|+|||+-  ++-|.++++......
T Consensus       537 Gl~~~~~~~~~~~~~~--~--------~gl~----~~~i~~i~-~~-~g~lWi~t--~~Gl~~~~~~~~~~~  590 (758)
T 3ott_A          537 GVMRINPKDESQQSIS--F--------GSFS----NNEILSMT-CV-KNSIWVST--TNGLWIIDRKTMDAR  590 (758)
T ss_dssp             EEEEECC--CCCCBCC--C--------CC-------CCEEEEE-EE-TTEEEEEE--SSCEEEEETTTCCEE
T ss_pred             ceEEEecCCCceEEec--c--------cCCC----ccceEEEE-EC-CCCEEEEC--CCCeEEEcCCCceeE
Confidence            6888883  3332221  0        1111    12345665 44 89999986  456899998765443

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=83.02  E-value=24  Score=32.84  Aligned_cols=123  Identities=7%  Similarity=0.011  Sum_probs=71.2

Q ss_pred             CceEEEEccCCcEEEEECCCCeEEEEeCCC-CcccccEEEecCCCCccccCCCcccccccCCcceEEEcC-CCcEEEEEC
Q 011333           84 EPYSVEVLPGGELLILDSANSNLYRISSSL-SLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDD-RGNIYIADT  161 (488)
Q Consensus        84 ~P~GIaVd~dG~LYVaD~~n~rI~kid~~g-~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~-dG~LYVAD~  161 (488)
                      ....+++++++ |+++. ..+.|+.++... .. .........               .-.....|++.+ +|+++++-.
T Consensus       152 ~v~~~~~~~~~-l~~~~-~d~~i~i~d~~~~~~-~~~~~~~~~---------------~~~~i~~i~~~~~~~~~l~~~~  213 (342)
T 1yfq_A          152 KIFTMDTNSSR-LIVGM-NNSQVQWFRLPLCED-DNGTIEESG---------------LKYQIRDVALLPKEQEGYACSS  213 (342)
T ss_dssp             CEEEEEECSSE-EEEEE-STTEEEEEESSCCTT-CCCEEEECS---------------CSSCEEEEEECSGGGCEEEEEE
T ss_pred             ceEEEEecCCc-EEEEe-CCCeEEEEECCcccc-ccceeeecC---------------CCCceeEEEECCCCCCEEEEEe
Confidence            56778888776 55554 457888888764 21 111112111               012357899999 898777766


Q ss_pred             CCCEEEEEc--CC------C-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCc
Q 011333          162 MNMAIRKIS--DS------G-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDD  232 (488)
Q Consensus       162 ~N~rIrkid--~g------g-VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g~~  232 (488)
                      ..+.|+.++  ..      . +.++.+.....     .+   ........+++ +.+++.++++-..++.|+.+++....
T Consensus       214 ~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~-----~~---~~~~~~i~~~~-~s~~~~~l~~~~~dg~i~vwd~~~~~  284 (342)
T 1yfq_A          214 IDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNL-----KD---TNLAYPVNSIE-FSPRHKFLYTAGSDGIISCWNLQTRK  284 (342)
T ss_dssp             TTSEEEEEECCTTCCSTTCTTCEEEECCCCCT-----TC---CSSCCCEEEEE-ECTTTCCEEEEETTSCEEEEETTTTE
T ss_pred             cCCcEEEEEEcCCCcccccccceeeecccccc-----cc---cccceeEEEEE-EcCCCCEEEEecCCceEEEEcCccHh
Confidence            788888855  33      3 34444321100     00   01112446777 56667766666677899999987544


Q ss_pred             e
Q 011333          233 C  233 (488)
Q Consensus       233 ~  233 (488)
                      +
T Consensus       285 ~  285 (342)
T 1yfq_A          285 K  285 (342)
T ss_dssp             E
T ss_pred             H
Confidence            3

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=82.98  E-value=14  Score=42.07  Aligned_cols=112  Identities=8%  Similarity=0.012  Sum_probs=70.2

Q ss_pred             CceEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcC--CCcEEEEEC
Q 011333           84 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDD--RGNIYIADT  161 (488)
Q Consensus        84 ~P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~--dG~LYVAD~  161 (488)
                      ....++++++|.++++-..++.|+.++..++.  .+..+.+.                -..-..+++.+  ++.++++-.
T Consensus       659 ~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~--~~~~~~~~----------------~~~v~~~~~~~~~~~~~l~sg~  720 (1249)
T 3sfz_A          659 EVLCCAFSSDDSYIATCSADKKVKIWDSATGK--LVHTYDEH----------------SEQVNCCHFTNKSNHLLLATGS  720 (1249)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEETTTCC--EEEEEECC----------------SSCEEEEEECSSSSCCEEEEEE
T ss_pred             CEEEEEEecCCCEEEEEeCCCeEEEEECCCCc--eEEEEcCC----------------CCcEEEEEEecCCCceEEEEEe
Confidence            45788999999988877778899999987532  23333332                11245677777  445666666


Q ss_pred             CCCEEEEEc--CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCC
Q 011333          162 MNMAIRKIS--DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFD  231 (488)
Q Consensus       162 ~N~rIrkid--~gg-VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g~  231 (488)
                      ..+.|+.++  .+. +.++.+..                 ....+++ +.+++.++++-...+.|+.++....
T Consensus       721 ~d~~v~vwd~~~~~~~~~~~~h~-----------------~~v~~~~-~sp~~~~l~s~s~dg~v~vwd~~~~  775 (1249)
T 3sfz_A          721 NDFFLKLWDLNQKECRNTMFGHT-----------------NSVNHCR-FSPDDELLASCSADGTLRLWDVRSA  775 (1249)
T ss_dssp             TTSCEEEEETTSSSEEEEECCCS-----------------SCEEEEE-ECSSTTEEEEEESSSEEEEEEGGGT
T ss_pred             CCCeEEEEECCCcchhheecCCC-----------------CCEEEEE-EecCCCEEEEEECCCeEEEEeCCCC
Confidence            677888888  333 33443211                 1235666 4566666666666777888876643

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=82.78  E-value=13  Score=39.46  Aligned_cols=64  Identities=8%  Similarity=0.107  Sum_probs=41.0

Q ss_pred             CceEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCc-EEEEECC
Q 011333           84 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-IYIADTM  162 (488)
Q Consensus        84 ~P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~-LYVAD~~  162 (488)
                      .+..+++++|+.|+++.  ++.|+.++..+   +....+....                .....+++++||+ |.++  .
T Consensus        83 ~v~~~~~spd~~~~~~~--~~~i~~~d~~~---~~~~~l~~~~----------------~~~~~~~~SpdG~~la~~--~  139 (706)
T 2z3z_A           83 PSFRTLDAGRGLVVLFT--QGGLVGFDMLA---RKVTYLFDTN----------------EETASLDFSPVGDRVAYV--R  139 (706)
T ss_dssp             CCEEEEETTTTEEEEEE--TTEEEEEETTT---TEEEEEECCT----------------TCCTTCEECTTSSEEEEE--E
T ss_pred             CceeEEECCCCeEEEEE--CCEEEEEECCC---CceEEccCCc----------------ccccCCcCCCCCCEEEEE--E
Confidence            57889999996666663  37999999876   3444443220                1245578888886 3333  3


Q ss_pred             CCEEEEEc
Q 011333          163 NMAIRKIS  170 (488)
Q Consensus       163 N~rIrkid  170 (488)
                      ++.|+.++
T Consensus       140 ~~~i~v~~  147 (706)
T 2z3z_A          140 NHNLYIAR  147 (706)
T ss_dssp             TTEEEEEE
T ss_pred             CCeEEEEe
Confidence            46777777

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=82.22  E-value=17  Score=33.97  Aligned_cols=121  Identities=11%  Similarity=0.072  Sum_probs=67.2

Q ss_pred             CceEEEEccC---Cc-EEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCC----Cc
Q 011333           84 EPYSVEVLPG---GE-LLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDR----GN  155 (488)
Q Consensus        84 ~P~GIaVd~d---G~-LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~d----G~  155 (488)
                      .-..|++.|+   +. ++++-...+.|+.++....  ..+..+.+....           ..-.....+++.++    |.
T Consensus        20 ~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~--~~~~~~~~~~~~-----------~~~~~v~~~~~~~~~~~~~~   86 (366)
T 3k26_A           20 PLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQ--GEIRLLQSYVDA-----------DADENFYTCAWTYDSNTSHP   86 (366)
T ss_dssp             CEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGG--GCEEEEEEEECS-----------CTTCCEEEEEEEECTTTCCE
T ss_pred             ceEEEEEecccCCCCceEEEECCCCEEEEEEcCCC--cEEEeeeecccc-----------CCCCcEEEEEeccCCCCCCC
Confidence            3467788763   33 4444444558888887632  223333221000           00123567888877    55


Q ss_pred             EEEEECCCCEEEEEc--CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCc
Q 011333          156 IYIADTMNMAIRKIS--DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDD  232 (488)
Q Consensus       156 LYVAD~~N~rIrkid--~gg-VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g~~  232 (488)
                      ++++=..++.|+.++  .+. +.++.+..                 ....+|++.+.+++++++-...+.|+.+++....
T Consensus        87 ~l~~~~~dg~i~v~d~~~~~~~~~~~~~~-----------------~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~  149 (366)
T 3k26_A           87 LLAVAGSRGIIRIINPITMQCIKHYVGHG-----------------NAINELKFHPRDPNLLLSVSKDHALRLWNIQTDT  149 (366)
T ss_dssp             EEEEEETTCEEEEECTTTCCEEEEEESCC-----------------SCEEEEEECSSCTTEEEEEETTSCEEEEETTTTE
T ss_pred             EEEEecCCCEEEEEEchhceEeeeecCCC-----------------CcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCe
Confidence            666655678999998  333 44443321                 1345677433266666666667788888877544


Q ss_pred             eE
Q 011333          233 CA  234 (488)
Q Consensus       233 ~~  234 (488)
                      +.
T Consensus       150 ~~  151 (366)
T 3k26_A          150 LV  151 (366)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=82.10  E-value=11  Score=35.89  Aligned_cols=112  Identities=13%  Similarity=-0.006  Sum_probs=65.1

Q ss_pred             eEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcC--CCcEEEEECCC
Q 011333           86 YSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDD--RGNIYIADTMN  163 (488)
Q Consensus        86 ~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~--dG~LYVAD~~N  163 (488)
                      ..++++++|.++++-...+.|+.++...+....+.++.|.    .            ..-..|++.+  +|+++++=...
T Consensus        17 ~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH----~------------~~V~~v~~~~~~~~~~l~s~s~D   80 (316)
T 3bg1_A           17 HDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGH----E------------GPVWQVAWAHPMYGNILASCSYD   80 (316)
T ss_dssp             EEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECC----S------------SCEEEEEECCGGGSSCEEEEETT
T ss_pred             EEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCC----C------------ccEEEEEeCCCCCCCEEEEEECC
Confidence            5678889999888877778898888754210012223222    1            1234677754  46766665566


Q ss_pred             CEEEEEc-C-CC---cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECC-CCeEEEEECCCCeEEEEEcCC
Q 011333          164 MAIRKIS-D-SG---VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGS-SCSLLVIDRGNRAIREIQLHF  230 (488)
Q Consensus       164 ~rIrkid-~-gg---VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~-~G~LYVaD~gN~rIrkI~~~g  230 (488)
                      +.|+..+ . +.   +.++.+..                 ....+|++.+. ++.++++-...+.|+.++...
T Consensus        81 ~~v~iWd~~~~~~~~~~~~~~h~-----------------~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~  136 (316)
T 3bg1_A           81 RKVIIWREENGTWEKSHEHAGHD-----------------SSVNSVCWAPHDYGLILACGSSDGAISLLTYTG  136 (316)
T ss_dssp             SCEEEECCSSSCCCEEEEECCCS-----------------SCCCEEEECCTTTCSCEEEECSSSCEEEEEECS
T ss_pred             CEEEEEECCCCcceEEEEccCCC-----------------CceEEEEECCCCCCcEEEEEcCCCCEEEEecCC
Confidence            7788887 2 22   22222211                 12456774332 266777777777888877654

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=82.03  E-value=32  Score=31.81  Aligned_cols=70  Identities=9%  Similarity=0.187  Sum_probs=45.3

Q ss_pred             ceEEEEccC-CcEEEEECCCCeEEEEeCCCCcc--cc-cEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEE
Q 011333           85 PYSVEVLPG-GELLILDSANSNLYRISSSLSLY--SR-PKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIAD  160 (488)
Q Consensus        85 P~GIaVd~d-G~LYVaD~~n~rI~kid~~g~~~--g~-i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD  160 (488)
                      -..|+++|+ ++++++-...+.|+.++......  +. ..++.|       +         -.....+++.++|+++++=
T Consensus        41 V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~-------h---------~~~V~~~~~s~dg~~l~s~  104 (340)
T 4aow_A           41 VTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRG-------H---------SHFVSDVVISSDGQFALSG  104 (340)
T ss_dssp             EEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECC-------C---------SSCEEEEEECTTSSEEEEE
T ss_pred             EEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeC-------C---------CCCEEEEEECCCCCEEEEE
Confidence            467888886 67888766677888887653210  11 111111       1         1235679999999877776


Q ss_pred             CCCCEEEEEc
Q 011333          161 TMNMAIRKIS  170 (488)
Q Consensus       161 ~~N~rIrkid  170 (488)
                      .....|+.++
T Consensus       105 ~~d~~i~~~~  114 (340)
T 4aow_A          105 SWDGTLRLWD  114 (340)
T ss_dssp             ETTSEEEEEE
T ss_pred             cccccceEEe
Confidence            6678888888

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=81.86  E-value=42  Score=33.06  Aligned_cols=108  Identities=15%  Similarity=0.113  Sum_probs=63.6

Q ss_pred             EEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEECCCCEEEE
Q 011333           89 EVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNMAIRK  168 (488)
Q Consensus        89 aVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~N~rIrk  168 (488)
                      ++.+++.++++-..++.|+.++.....  .+..+.+.                -.....++++++|+.+++-...+.|+.
T Consensus       275 ~~~~~~~~l~~~~~d~~i~vwd~~~~~--~~~~~~~~----------------~~~v~~~~~~~~~~~l~sg~~dg~i~v  336 (464)
T 3v7d_B          275 TVSGHGNIVVSGSYDNTLIVWDVAQMK--CLYILSGH----------------TDRIYSTIYDHERKRCISASMDTTIRI  336 (464)
T ss_dssp             EEEEETTEEEEEETTSCEEEEETTTTE--EEEEECCC----------------SSCEEEEEEETTTTEEEEEETTSCEEE
T ss_pred             EEcCCCCEEEEEeCCCeEEEEECCCCc--EEEEecCC----------------CCCEEEEEEcCCCCEEEEEeCCCcEEE
Confidence            345667777766667889999876421  22233221                123567899999987777777888999


Q ss_pred             Ec--CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCceE
Q 011333          169 IS--DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCA  234 (488)
Q Consensus       169 id--~gg-VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g~~~~  234 (488)
                      ++  .+. +.++.+..                 .....++ .+  +..+++-...+.|+.+++......
T Consensus       337 wd~~~~~~~~~~~~h~-----------------~~v~~~~-~~--~~~l~s~s~dg~v~vwd~~~~~~~  385 (464)
T 3v7d_B          337 WDLENGELMYTLQGHT-----------------ALVGLLR-LS--DKFLVSAAADGSIRGWDANDYSRK  385 (464)
T ss_dssp             EETTTTEEEEEECCCS-----------------SCEEEEE-EC--SSEEEEEETTSEEEEEETTTCCEE
T ss_pred             EECCCCcEEEEEeCCC-----------------CcEEEEE-Ec--CCEEEEEeCCCcEEEEECCCCcee
Confidence            98  333 34443211                 1223455 22  344555555677777777654433

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=81.25  E-value=38  Score=32.22  Aligned_cols=68  Identities=9%  Similarity=-0.000  Sum_probs=48.0

Q ss_pred             ceEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEECCCC
Q 011333           85 PYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNM  164 (488)
Q Consensus        85 P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~N~  164 (488)
                      -..+++.++|.++++-...+.|+.++...+.  .+..+.+.                -..-..|++.++|+.+++=...+
T Consensus        79 V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~--~~~~~~~h----------------~~~v~~v~~sp~~~~l~s~~~d~  140 (343)
T 2xzm_R           79 VSDLALSQENCFAISSSWDKTLRLWDLRTGT--TYKRFVGH----------------QSEVYSVAFSPDNRQILSAGAER  140 (343)
T ss_dssp             EEEEEECSSTTEEEEEETTSEEEEEETTSSC--EEEEEECC----------------CSCEEEEEECSSTTEEEEEETTS
T ss_pred             eEEEEECCCCCEEEEEcCCCcEEEEECCCCc--EEEEEcCC----------------CCcEEEEEECCCCCEEEEEcCCC
Confidence            4678889999988887778899999987521  23334332                11246789999998776655677


Q ss_pred             EEEEEc
Q 011333          165 AIRKIS  170 (488)
Q Consensus       165 rIrkid  170 (488)
                      .|+.++
T Consensus       141 ~i~~wd  146 (343)
T 2xzm_R          141 EIKLWN  146 (343)
T ss_dssp             CEEEEE
T ss_pred             EEEEEe
Confidence            888887

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=80.91  E-value=6.2  Score=38.77  Aligned_cols=69  Identities=17%  Similarity=0.124  Sum_probs=50.0

Q ss_pred             ceEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEECCCC
Q 011333           85 PYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNM  164 (488)
Q Consensus        85 P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~N~  164 (488)
                      -..|+++|||.++++-...+.|+.++.....  .+.++..      ||         -..-++|++.|||.++++=...+
T Consensus       272 V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~--~~~~~~~------gH---------~~~V~~v~fSpdg~~laS~S~D~  334 (365)
T 4h5i_A          272 ITSMDVDMKGELAVLASNDNSIALVKLKDLS--MSKIFKQ------AH---------SFAITEVTISPDSTYVASVSAAN  334 (365)
T ss_dssp             EEEEEECTTSCEEEEEETTSCEEEEETTTTE--EEEEETT------SS---------SSCEEEEEECTTSCEEEEEETTS
T ss_pred             eEeEEECCCCCceEEEcCCCEEEEEECCCCc--EEEEecC------cc---------cCCEEEEEECCCCCEEEEEeCCC
Confidence            3578899999988877777899999987521  1223221      12         12357899999999999877788


Q ss_pred             EEEEEc
Q 011333          165 AIRKIS  170 (488)
Q Consensus       165 rIrkid  170 (488)
                      .||.++
T Consensus       335 tvrvw~  340 (365)
T 4h5i_A          335 TIHIIK  340 (365)
T ss_dssp             EEEEEE
T ss_pred             eEEEEE
Confidence            899887

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=80.86  E-value=26  Score=36.65  Aligned_cols=83  Identities=16%  Similarity=0.228  Sum_probs=47.2

Q ss_pred             CceEEEEccCCcEEEEECCCC--eEEEEeCCCCcccccEEEecCCCCccccCCCcccccccC-CcceEEEcCCCcEEEEE
Q 011333           84 EPYSVEVLPGGELLILDSANS--NLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMN-HPKGLTVDDRGNIYIAD  160 (488)
Q Consensus        84 ~P~GIaVd~dG~LYVaD~~n~--rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln-~P~GIAvD~dG~LYVAD  160 (488)
                      ....+++++||.||++...++  +|++++.++   +....+....... +   .    ..+. ....+++.++|.++++-
T Consensus       243 ~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~---~~~~~l~~~~~~~-~---~----p~w~~~~~~~~~~~~~~~~~~~  311 (662)
T 3azo_A          243 AIAQAEWAPDGSLIVATDRTGWWNLHRVDPAT---GAATQLCRREEEF-A---G----PLWTPGMRWFAPLANGLIAVVH  311 (662)
T ss_dssp             CEEEEEECTTSCEEEEECTTSSCEEEEECTTT---CCEEESSCCSSBS-S---C----CCCSTTCCSEEECTTSCEEEEE
T ss_pred             eEcceEECCCCeEEEEECCCCCeEEEEEECCC---Cceeecccccccc-c---C----ccccccCceEeEeCCCEEEEEE
Confidence            456788889999777755444  899998865   3344433211000 0   0    0010 13468888888877654


Q ss_pred             C-CCCEEEEEc-CCC-cEEE
Q 011333          161 T-MNMAIRKIS-DSG-VTTI  177 (488)
Q Consensus       161 ~-~N~rIrkid-~gg-VttI  177 (488)
                      . +..+|..++ +++ +..+
T Consensus       312 ~~~~~~l~~~d~~~~~~~~l  331 (662)
T 3azo_A          312 GKGAAVLGILDPESGELVDA  331 (662)
T ss_dssp             BSSSCEEEEEETTTTEEEEC
T ss_pred             EcCccEEEEEECCCCcEEEe
Confidence            3 445677777 433 5444

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=80.53  E-value=5.9  Score=44.65  Aligned_cols=75  Identities=5%  Similarity=-0.128  Sum_probs=46.1

Q ss_pred             EEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCC--CccccCCCcccccccCCcceEEEcCCCcEEEEECCCC
Q 011333           87 SVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAE--GYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNM  164 (488)
Q Consensus        87 GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~--G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~N~  164 (488)
                      .+++.++|.++++-...+.|+.++..++.......+.-...  -..|+         -.....|+++++|.++++=...+
T Consensus       440 sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h---------~~~V~svafspdg~~LAsgs~Dg  510 (902)
T 2oaj_A          440 QKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAK---------ELAVDKISFAAETLELAVSIETG  510 (902)
T ss_dssp             CCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSS---------SCCEEEEEEETTTTEEEEEETTS
T ss_pred             cccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCC---------CCceeEEEecCCCCeEEEEecCc
Confidence            35567889999998888999999987532111000000000  00011         12467899999998777666677


Q ss_pred             EEEEEc
Q 011333          165 AIRKIS  170 (488)
Q Consensus       165 rIrkid  170 (488)
                      .|+.++
T Consensus       511 tV~lwd  516 (902)
T 2oaj_A          511 DVVLFK  516 (902)
T ss_dssp             CEEEEE
T ss_pred             EEEEEE
Confidence            788777

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=80.05  E-value=8  Score=42.24  Aligned_cols=70  Identities=9%  Similarity=-0.075  Sum_probs=41.8

Q ss_pred             ceEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCC--CcEEEEECC
Q 011333           85 PYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDR--GNIYIADTM  162 (488)
Q Consensus        85 P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~d--G~LYVAD~~  162 (488)
                      -..++++++|.++++-..++.|+.++..+.....+.++.+.                -..-..|++.++  |+++++=..
T Consensus        12 V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h----------------~~~V~~l~~s~~~~~~~l~s~s~   75 (753)
T 3jro_A           12 IHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGH----------------EGPVWRVDWAHPKFGTILASCSY   75 (753)
T ss_dssp             EEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCC----------------SSCEEEEEECCTTSCSEEEEEET
T ss_pred             eEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCC----------------cCceEEEEecCCCCCCEEEEEeC
Confidence            35667788888666666678888888653211112222221                112356777766  776666556


Q ss_pred             CCEEEEEc
Q 011333          163 NMAIRKIS  170 (488)
Q Consensus       163 N~rIrkid  170 (488)
                      .+.|+.++
T Consensus        76 Dg~I~vwd   83 (753)
T 3jro_A           76 DGKVLIWK   83 (753)
T ss_dssp             TSCEEEEE
T ss_pred             CCeEEEEE
Confidence            77777777

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=80.02  E-value=5.1  Score=40.86  Aligned_cols=117  Identities=6%  Similarity=-0.101  Sum_probs=69.2

Q ss_pred             CceEEEEccCCcEEE----EECCCCeEEEEeCCCCc-----c-cccEEEecCCCCccccCCCcccccccCCcceEEEcCC
Q 011333           84 EPYSVEVLPGGELLI----LDSANSNLYRISSSLSL-----Y-SRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDR  153 (488)
Q Consensus        84 ~P~GIaVd~dG~LYV----aD~~n~rI~kid~~g~~-----~-g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~d  153 (488)
                      ....++++++|.+++    +-...+.|+.++.....     . ..+..+. .   ..|+         -....+|++.++
T Consensus        94 ~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~-~---~~~h---------~~~V~~v~~~p~  160 (434)
T 2oit_A           94 PIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHK-L---LKDA---------GGMVIDMKWNPT  160 (434)
T ss_dssp             CEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEE-C---CCSG---------GGSEEEEEECSS
T ss_pred             cccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeee-c---cCCC---------CCceEEEEECCC
Confidence            467899999998666    44556788888764210     0 0000010 0   0111         123578999987


Q ss_pred             -CcEEEEECCCCEEEEEc-CCCcEE--EeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcC
Q 011333          154 -GNIYIADTMNMAIRKIS-DSGVTT--IAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLH  229 (488)
Q Consensus       154 -G~LYVAD~~N~rIrkid-~ggVtt--IaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~  229 (488)
                       ++++++=...+.|+.+| ..+...  ..+.                 -....+++ ..++|..+++-..++.|+.++..
T Consensus       161 ~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~-----------------~~~v~~v~-wspdg~~lasgs~dg~v~iwd~~  222 (434)
T 2oit_A          161 VPSMVAVCLADGSIAVLQVTETVKVCATLPS-----------------TVAVTSVC-WSPKGKQLAVGKQNGTVVQYLPT  222 (434)
T ss_dssp             CTTEEEEEETTSCEEEEEESSSEEEEEEECG-----------------GGCEEEEE-ECTTSSCEEEEETTSCEEEECTT
T ss_pred             CCCEEEEEECCCeEEEEEcCCCcceeeccCC-----------------CCceeEEE-EcCCCCEEEEEcCCCcEEEEccC
Confidence             77777666678888888 333222  1111                 11356788 45667666666677889998887


Q ss_pred             CC
Q 011333          230 FD  231 (488)
Q Consensus       230 g~  231 (488)
                      +.
T Consensus       223 ~~  224 (434)
T 2oit_A          223 LQ  224 (434)
T ss_dssp             CC
T ss_pred             Cc
Confidence            43

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	488
d1q7fa_	279	b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (D	2e-07
d1rwia_	260	b.68.9.1 (A:) Serine/threonine-protein kinase PknD	7e-05

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 279

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 50.4 bits (119), Expect = 2e-07
 Identities = 21/94 (22%), Positives = 39/94 (41%), Gaps = 5/94 (5%)

Query: 118 RPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNMAIRKISDSGVTTI 177
           R +++     G  G ++G+        P G+ V+ + +I +ADT N  I+     G    
Sbjct: 3   RQRMIYHCKFGEFGVMEGQ-----FTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKF 57

Query: 178 AGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSC 211
             G+ G+    +  P+  A   N  D++    S 
Sbjct: 58  QFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSP 91

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} Length = 260

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 42.1 bits (97), Expect = 7e-05
 Identities = 9/32 (28%), Positives = 16/32 (50%)

Query: 142 MNHPKGLTVDDRGNIYIADTMNMAIRKISDSG 173
           +N P  + VD    +Y+AD  N  + K++   
Sbjct: 223 LNTPLAVAVDSDRTVYVADRGNDRVVKLTSLE 254

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	488
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.6
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.59
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.58
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.52
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.39
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.37
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.36
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.34
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	99.24
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	99.22
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	99.21
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.21
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	99.2
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.11
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.86
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.81
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	98.28
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.07
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	97.97
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	97.93
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	97.81
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	97.67
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	97.65
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	97.59
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	97.48
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	97.46
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	96.94
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	96.56
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	96.26
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	95.62
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	95.52
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	95.45
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	95.26
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	95.12
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	94.92
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	94.83
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	94.67
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	94.46
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	94.34
d1tbga_	340	beta1-subunit of the signal-transducing G protein	94.33
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	94.1
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	93.95
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	93.87
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	93.17
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	93.02
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	92.92
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	92.55
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	92.34
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	92.23
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	91.56
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	90.65
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	90.48
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	89.63
d1tbga_	340	beta1-subunit of the signal-transducing G protein	89.45
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	87.94
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	87.81
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	86.93
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	84.31
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	83.79
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	83.15
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	80.42

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.60  E-value=2.6e-15  Score=143.08  Aligned_cols=116  Identities=20%  Similarity=0.325  Sum_probs=95.3

Q ss_pred             CCCCceEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEE
Q 011333           81 LGIEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIAD  160 (488)
Q Consensus        81 ~l~~P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD  160 (488)
                      .+..|.+|+++++|+||++|..+++|++++.++.    .......              ..|+.|.||++|++|+|||+|
T Consensus       138 ~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~----~~~~~~~--------------~~~~~p~gi~~d~~g~l~vsd  199 (260)
T d1rwia_         138 GLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESN----NQVVLPF--------------TDITAPWGIAVDEAGTVYVTE  199 (260)
T ss_dssp             SCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTC----CEEECCC--------------SSCCSEEEEEECTTCCEEEEE
T ss_pred             ccCCcceeeecCCCCEeeeccccccccccccccc----eeeeeec--------------cccCCCccceeeeeeeeeeee
Confidence            3568999999999999999999999999998852    2222221              238889999999999999999


Q ss_pred             CCCCEEEEEc-CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCC
Q 011333          161 TMNMAIRKIS-DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHF  230 (488)
Q Consensus       161 ~~N~rIrkid-~ggVttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g  230 (488)
                      ..+++|.+++ ++...++...               ..|..|.+|+ ++++|+|||+|.++++|++|+..+
T Consensus       200 ~~~~~i~~~~~~~~~~~~~~~---------------~~~~~P~~i~-~d~~g~l~vad~~~~rI~~i~~~~  254 (260)
T d1rwia_         200 HNTNQVVKLLAGSTTSTVLPF---------------TGLNTPLAVA-VDSDRTVYVADRGNDRVVKLTSLE  254 (260)
T ss_dssp             TTTTEEEEECTTCSCCEECCC---------------CSCCCEEEEE-ECTTCCEEEEEGGGTEEEEECCCG
T ss_pred             cCCCEEEEEeCCCCeEEEEcc---------------CCCCCeEEEE-EeCCCCEEEEECCCCEEEEEeCCC
Confidence            9999999999 4555444322               1377899999 799999999999999999998764

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.59  E-value=1.9e-14  Score=138.27  Aligned_cols=150  Identities=17%  Similarity=0.296  Sum_probs=111.1

Q ss_pred             CCCCceEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCC---CC------------ccc--------------
Q 011333           81 LGIEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSA---EG------------YSG--------------  131 (488)
Q Consensus        81 ~l~~P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~---~G------------~~G--------------  131 (488)
                      .|..|.||+|+++|+|||+|..|+||++++++|..    ....+..   .+            ..+              
T Consensus        21 ~f~~P~gvavd~dg~i~VaD~~n~rI~v~d~~G~~----~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~   96 (279)
T d1q7fa_          21 QFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRF----KFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQ   96 (279)
T ss_dssp             CBSCEEEEEECTTCCEEEEEGGGTEEEEECTTSCE----EEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEE
T ss_pred             eECCccEEEEcCCCCEEEEECCCCEEEEEeCCCCE----EEEecccCCCcccccccccccccccccccceeccCCccccc
Confidence            46799999999999999999999999999998632    2222211   00            000              


Q ss_pred             --cCCCc----ccccccCCcceEEEcCCCcEEEEECCCCEEEEEc-CCCc-EEEeCCccCCCCCCCCCCcccccCCCCCe
Q 011333          132 --HVDGK----PREARMNHPKGLTVDDRGNIYIADTMNMAIRKIS-DSGV-TTIAGGKWGRGGGHVDGPSEDAKFSNDFD  203 (488)
Q Consensus       132 --~~dG~----a~~a~Ln~P~GIAvD~dG~LYVAD~~N~rIrkid-~ggV-ttIaGg~~g~~~g~~dG~~~~a~f~~P~g  203 (488)
                        ..+|.    .....++.|.++++|++|++|++|..+++|.+++ ++.+ .++...               ..+..|.+
T Consensus        97 ~~~~~g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g~~~~~~g~~---------------~~~~~~~~  161 (279)
T d1q7fa_          97 IYNQYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLHKFGCS---------------KHLEFPNG  161 (279)
T ss_dssp             EECTTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEEECT---------------TTCSSEEE
T ss_pred             cccccccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccCCceeeccccc---------------ccccccce
Confidence              01121    1123578899999999999999999999999999 5554 443221               24678999


Q ss_pred             eEEECCCCeEEEEECCCCeEEEEEcCCCceEEec---cCCCcceEEEEec
Q 011333          204 VVYIGSSCSLLVIDRGNRAIREIQLHFDDCAYQY---GSSFPLGIAVLLA  250 (488)
Q Consensus       204 Ia~vd~~G~LYVaD~gN~rIrkI~~~g~~~~~~~---~~g~P~GIav~~g  250 (488)
                      |+ ++++|+|||+|..+++|++++.+|.......   ....|.|||++..
T Consensus       162 i~-~d~~g~i~v~d~~~~~V~~~d~~G~~~~~~g~~g~~~~P~giavD~~  210 (279)
T d1q7fa_         162 VV-VNDKQEIFISDNRAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSN  210 (279)
T ss_dssp             EE-ECSSSEEEEEEGGGTEEEEEETTCCEEEEESCTTTSCSEEEEEECTT
T ss_pred             ee-eccceeEEeeeccccceeeeecCCceeeeecccccccCCcccccccC
Confidence            99 8999999999999999999999987554432   3457999999854

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.58  E-value=2e-14  Score=136.78  Aligned_cols=135  Identities=19%  Similarity=0.310  Sum_probs=108.4

Q ss_pred             CCCceEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEEC
Q 011333           82 GIEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADT  161 (488)
Q Consensus        82 l~~P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~  161 (488)
                      +..|.+|+++++|+||++|..++++.+++..+.    .......              ..++.|.||+++++|+|||+|.
T Consensus        97 ~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~----~~~~~~~--------------~~~~~p~~i~~~~~g~~~v~~~  158 (260)
T d1rwia_          97 LNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSK----TQTVLPF--------------TGLNDPDGVAVDNSGNVYVTDT  158 (260)
T ss_dssp             CCSEEEEEECTTCCEEEEEGGGTEEEEECTTCS----SCEECCC--------------CSCCSCCEEEECTTCCEEEEEG
T ss_pred             eeecccccccccceeEeeccccccccccccccc----eeeeeee--------------cccCCcceeeecCCCCEeeecc
Confidence            568999999999999999999999999998752    2223221              1278899999999999999999


Q ss_pred             CCCEEEEEc-CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCceEEe--cc
Q 011333          162 MNMAIRKIS-DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCAYQ--YG  238 (488)
Q Consensus       162 ~N~rIrkid-~ggVttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g~~~~~~--~~  238 (488)
                      .+++|.+++ ++........               ..|..|.+|+ +|++|+|||+|..+++|.+++..+......  .+
T Consensus       159 ~~~~i~~~d~~~~~~~~~~~---------------~~~~~p~gi~-~d~~g~l~vsd~~~~~i~~~~~~~~~~~~~~~~~  222 (260)
T d1rwia_         159 DNNRVVKLEAESNNQVVLPF---------------TDITAPWGIA-VDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTG  222 (260)
T ss_dssp             GGTEEEEECTTTCCEEECCC---------------SSCCSEEEEE-ECTTCCEEEEETTTTEEEEECTTCSCCEECCCCS
T ss_pred             ccccccccccccceeeeeec---------------cccCCCccce-eeeeeeeeeeecCCCEEEEEeCCCCeEEEEccCC
Confidence            999999999 4444333221               2467899999 799999999999999999999988766654  34


Q ss_pred             CCCcceEEEEec
Q 011333          239 SSFPLGIAVLLA  250 (488)
Q Consensus       239 ~g~P~GIav~~g  250 (488)
                      ...|.||+++..
T Consensus       223 ~~~P~~i~~d~~  234 (260)
T d1rwia_         223 LNTPLAVAVDSD  234 (260)
T ss_dssp             CCCEEEEEECTT
T ss_pred             CCCeEEEEEeCC
Confidence            467999999843

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.52  E-value=1.7e-13  Score=131.47  Aligned_cols=138  Identities=16%  Similarity=0.240  Sum_probs=108.2

Q ss_pred             CCCCCceEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEE
Q 011333           80 KLGIEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIA  159 (488)
Q Consensus        80 ~~l~~P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVA  159 (488)
                      ..+..|.+++++++|.+|++|..+++|.++++++    .+....+..             ..+..|.+|++|++|+|||+
T Consensus       111 ~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g----~~~~~~g~~-------------~~~~~~~~i~~d~~g~i~v~  173 (279)
T d1q7fa_         111 TILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG----NVLHKFGCS-------------KHLEFPNGVVVNDKQEIFIS  173 (279)
T ss_dssp             TTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS----CEEEEEECT-------------TTCSSEEEEEECSSSEEEEE
T ss_pred             CcccccceeccccCCcEEEEeeccceeeEeccCC----ceeeccccc-------------ccccccceeeeccceeEEee
Confidence            4467899999999999999999999999999986    333333321             23788999999999999999


Q ss_pred             ECCCCEEEEEc-CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECC-CCeEEEEEcCCCceEEe
Q 011333          160 DTMNMAIRKIS-DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRG-NRAIREIQLHFDDCAYQ  236 (488)
Q Consensus       160 D~~N~rIrkid-~gg-VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~g-N~rIrkI~~~g~~~~~~  236 (488)
                      |..+++|++++ +|. +.++ +.              ...+..|.+|+ +|++|+|||+|.. +++|.+++.+|......
T Consensus       174 d~~~~~V~~~d~~G~~~~~~-g~--------------~g~~~~P~gia-vD~~G~i~Vad~~~~~~v~~f~~~G~~~~~~  237 (279)
T d1q7fa_         174 DNRAHCVKVFNYEGQYLRQI-GG--------------EGITNYPIGVG-INSNGEILIADNHNNFNLTIFTQDGQLISAL  237 (279)
T ss_dssp             EGGGTEEEEEETTCCEEEEE-SC--------------TTTSCSEEEEE-ECTTCCEEEEECSSSCEEEEECTTSCEEEEE
T ss_pred             eccccceeeeecCCceeeee-cc--------------cccccCCcccc-cccCCeEEEEECCCCcEEEEECCCCCEEEEE
Confidence            99999999999 555 3444 21              12478899999 8999999999985 45899999988754332


Q ss_pred             ---ccCCCcceEEEEec
Q 011333          237 ---YGSSFPLGIAVLLA  250 (488)
Q Consensus       237 ---~~~g~P~GIav~~g  250 (488)
                         .....|.+||++..
T Consensus       238 ~~~~~~~~p~~vav~~d  254 (279)
T d1q7fa_         238 ESKVKHAQCFDVALMDD  254 (279)
T ss_dssp             EESSCCSCEEEEEEETT
T ss_pred             eCCCCCCCEeEEEEeCC
Confidence               22347999999854

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.39  E-value=1.7e-12  Score=127.47  Aligned_cols=127  Identities=11%  Similarity=0.091  Sum_probs=94.0

Q ss_pred             CCCCCceEEEEccCCcEEEEECCC------CeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCC
Q 011333           80 KLGIEPYSVEVLPGGELLILDSAN------SNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDR  153 (488)
Q Consensus        80 ~~l~~P~GIaVd~dG~LYVaD~~n------~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~d  153 (488)
                      .....|.+++++++|+|||+|..+      +.|+++++++   +.+..+...                +..|+||+++++
T Consensus       127 ~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg---~~~~~~~~~----------------~~~pnGia~s~d  187 (319)
T d2dg1a1         127 STAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDF---RTVTPIIQN----------------ISVANGIALSTD  187 (319)
T ss_dssp             SSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTS---CCEEEEEEE----------------ESSEEEEEECTT
T ss_pred             CcccCCcceeEEeccceeecccccccccCcceeEEEeccc---ceeEEEeec----------------cceeeeeeeccc
Confidence            335679999999999999999754      4599999886   234444332                678999999999


Q ss_pred             Cc-EEEEECCCCEEEEEc---CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcC
Q 011333          154 GN-IYIADTMNMAIRKIS---DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLH  229 (488)
Q Consensus       154 G~-LYVAD~~N~rIrkid---~ggVttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~  229 (488)
                      |+ |||+|+.+++|++|+   ++......+....         .....+..|.||+ +|.+|+|||++.++++|++|++.
T Consensus       188 g~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~---------~~~~~~~~PdGl~-vD~~G~l~Va~~~~g~V~~~~p~  257 (319)
T d2dg1a1         188 EKVLWVTETTANRLHRIALEDDGVTIQPFGATIP---------YYFTGHEGPDSCC-IDSDDNLYVAMYGQGRVLVFNKR  257 (319)
T ss_dssp             SSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEE---------EECCSSSEEEEEE-EBTTCCEEEEEETTTEEEEECTT
T ss_pred             cceEEEecccCCceEEEEEcCCCceeccccceee---------eccCCccceeeee-EcCCCCEEEEEcCCCEEEEECCC
Confidence            96 999999999999998   3332222111000         0111234689999 89999999999999999999999


Q ss_pred             CCceEE
Q 011333          230 FDDCAY  235 (488)
Q Consensus       230 g~~~~~  235 (488)
                      |.....
T Consensus       258 G~~l~~  263 (319)
T d2dg1a1         258 GYPIGQ  263 (319)
T ss_dssp             SCEEEE
T ss_pred             CcEEEE
Confidence            865443

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.37  E-value=1.2e-11  Score=121.28  Aligned_cols=152  Identities=14%  Similarity=0.202  Sum_probs=106.3

Q ss_pred             CCceEEEEccCCcEEEEECC----CCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEE
Q 011333           83 IEPYSVEVLPGGELLILDSA----NSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYI  158 (488)
Q Consensus        83 ~~P~GIaVd~dG~LYVaD~~----n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYV  158 (488)
                      ..|.||++++||+|||++.+    ...|.+++..+   +.+..+....             ..+..|+++++|++|+|||
T Consensus        82 ~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~---~~~~~~~~~~-------------~~~~~~nd~~~d~~G~l~v  145 (319)
T d2dg1a1          82 ANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENG---DNLQDIIEDL-------------STAYCIDDMVFDSKGGFYF  145 (319)
T ss_dssp             SSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTS---CSCEEEECSS-------------SSCCCEEEEEECTTSCEEE
T ss_pred             CCeeEEEECCCCCEEEEecCCCccceeEEEEcCCC---ceeeeeccCC-------------CcccCCcceeEEeccceee
Confidence            37999999999999999864    45788888876   3444444321             2266799999999999999


Q ss_pred             EECCC------CEEEEEc-CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCC-eEEEEECCCCeEEEEEcC
Q 011333          159 ADTMN------MAIRKIS-DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSC-SLLVIDRGNRAIREIQLH  229 (488)
Q Consensus       159 AD~~N------~rIrkid-~gg-VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G-~LYVaD~gN~rIrkI~~~  229 (488)
                      +|..+      ..|.+++ +++ +..+..                 .+..|+||+ +++++ .|||+|+.+++|++++++
T Consensus       146 td~~~~~~~~~g~v~~~~~dg~~~~~~~~-----------------~~~~pnGia-~s~dg~~lyvad~~~~~I~~~d~~  207 (319)
T d2dg1a1         146 TDFRGYSTNPLGGVYYVSPDFRTVTPIIQ-----------------NISVANGIA-LSTDEKVLWVTETTANRLHRIALE  207 (319)
T ss_dssp             EECCCBTTBCCEEEEEECTTSCCEEEEEE-----------------EESSEEEEE-ECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred             cccccccccCcceeEEEecccceeEEEee-----------------ccceeeeee-eccccceEEEecccCCceEEEEEc
Confidence            99764      3488887 444 455443                 256799999 56655 699999999999999986


Q ss_pred             CCceE----------EeccCCCcceEEEEecCCceEEEEEEEEeccceEEecc
Q 011333          230 FDDCA----------YQYGSSFPLGIAVLLAAGFFGYMLALLQRRVGTIVSSQ  272 (488)
Q Consensus       230 g~~~~----------~~~~~g~P~GIav~~g~g~~Gy~~a~l~~~~g~~~~s~  272 (488)
                      .+...          ...+...|+||+++..    |.++......-.+.++++
T Consensus       208 ~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~----G~l~Va~~~~g~V~~~~p  256 (319)
T d2dg1a1         208 DDGVTIQPFGATIPYYFTGHEGPDSCCIDSD----DNLYVAMYGQGRVLVFNK  256 (319)
T ss_dssp             TTSSSEEEEEEEEEEECCSSSEEEEEEEBTT----CCEEEEEETTTEEEEECT
T ss_pred             CCCceeccccceeeeccCCccceeeeeEcCC----CCEEEEEcCCCEEEEECC
Confidence            53211          1223356999999954    455554443334444554

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.36  E-value=1.9e-11  Score=120.02  Aligned_cols=143  Identities=16%  Similarity=0.172  Sum_probs=105.3

Q ss_pred             CCCceEEEEccCCcEEEEECC-------CCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCC
Q 011333           82 GIEPYSVEVLPGGELLILDSA-------NSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRG  154 (488)
Q Consensus        82 l~~P~GIaVd~dG~LYVaD~~-------n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG  154 (488)
                      +..|.|++++++|+||+++..       +++|+++++++   +....+.... .          ...-..|+||++|++|
T Consensus        17 ~~g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~---~~~~~~~~~~-~----------~~~~g~P~Gl~~~~dg   82 (314)
T d1pjxa_          17 IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKT---GKKTVICKPE-V----------NGYGGIPAGCQCDRDA   82 (314)
T ss_dssp             CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTT---CCEEEEECCE-E----------TTEECCEEEEEECSSS
T ss_pred             CCCCeEeEEeCCCCEEEEECccccccccCCEEEEEECCC---CcEEEEECCc-c----------ccCCCcceeEEEeCCC
Confidence            347899999999999999865       46899999986   3344443321 0          0112359999999998


Q ss_pred             c-EEEEECCCCEEEEEc-CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECC-------------
Q 011333          155 N-IYIADTMNMAIRKIS-DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRG-------------  219 (488)
Q Consensus       155 ~-LYVAD~~N~rIrkid-~ggVttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~g-------------  219 (488)
                      + |||+|. .++|++++ +++..+++....           ....|+.|++++ ++++|+|||+|..             
T Consensus        83 ~~l~vad~-~~~i~~~~~~g~~~~~~~~~~-----------~g~~~~~pndl~-~d~~G~lyvtd~~~~~~~~~~~~~~~  149 (314)
T d1pjxa_          83 NQLFVADM-RLGLLVVQTDGTFEEIAKKDS-----------EGRRMQGCNDCA-FDYEGNLWITAPAGEVAPADYTRSMQ  149 (314)
T ss_dssp             SEEEEEET-TTEEEEEETTSCEEECCSBCT-----------TSCBCBCCCEEE-ECTTSCEEEEECBCBCTTSCCCBTTS
T ss_pred             CEEEEEEC-CCeEEEEeCCCcEEEEEeccc-----------cccccCCCcEEE-ECCCCCEEEecCccCcccccccceec
Confidence            6 899996 56799999 666665543211           113578999999 8999999999964             


Q ss_pred             --CCeEEEEEcCCCceEEeccCCCcceEEEEecC
Q 011333          220 --NRAIREIQLHFDDCAYQYGSSFPLGIAVLLAA  251 (488)
Q Consensus       220 --N~rIrkI~~~g~~~~~~~~~g~P~GIav~~g~  251 (488)
                        .++|+++++++...........|.||++....
T Consensus       150 ~~~G~v~~~~~dg~~~~~~~~~~~pNGi~~~~d~  183 (314)
T d1pjxa_         150 EKFGSIYCFTTDGQMIQVDTAFQFPNGIAVRHMN  183 (314)
T ss_dssp             SSCEEEEEECTTSCEEEEEEEESSEEEEEEEECT
T ss_pred             cCCceEEEEeecCceeEeeCCcceeeeeEECCCC
Confidence              34899999988766666677789999987653

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.34  E-value=1.1e-11  Score=121.82  Aligned_cols=143  Identities=12%  Similarity=0.063  Sum_probs=102.7

Q ss_pred             CCCceEEEEccCCcEEEEECC---------------CCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcc
Q 011333           82 GIEPYSVEVLPGGELLILDSA---------------NSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPK  146 (488)
Q Consensus        82 l~~P~GIaVd~dG~LYVaD~~---------------n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~  146 (488)
                      +..|++++++++|+|||+|..               .++|+++++++    ....++..                +..|+
T Consensus       116 ~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg----~~~~~~~~----------------~~~pN  175 (314)
T d1pjxa_         116 MQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDG----QMIQVDTA----------------FQFPN  175 (314)
T ss_dssp             CBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTS----CEEEEEEE----------------ESSEE
T ss_pred             cCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeecC----ceeEeeCC----------------cceee
Confidence            557999999999999999964               24799999884    44444432                77899


Q ss_pred             eEEEcCCCc-----EEEEECCCCEEEEEc---CCCcEE---EeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEE
Q 011333          147 GLTVDDRGN-----IYIADTMNMAIRKIS---DSGVTT---IAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLV  215 (488)
Q Consensus       147 GIAvD~dG~-----LYVAD~~N~rIrkid---~ggVtt---IaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYV  215 (488)
                      ||+++++++     |||+|+.+++|++++   ++.+..   ++....             .....|.||+ +|.+|+|||
T Consensus       176 Gi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~-------------~~~~~pdGia-vD~~GnlyV  241 (314)
T d1pjxa_         176 GIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPG-------------THEGGADGMD-FDEDNNLLV  241 (314)
T ss_dssp             EEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCC-------------CSSCEEEEEE-EBTTCCEEE
T ss_pred             eeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccc-------------cccccceeeE-EecCCcEEE
Confidence            999988764     999999999999987   333321   211100             1123588999 899999999


Q ss_pred             EECCCCeEEEEEcCCCc-eE-EeccCCCcceEEEEecCCceEEEEE
Q 011333          216 IDRGNRAIREIQLHFDD-CA-YQYGSSFPLGIAVLLAAGFFGYMLA  259 (488)
Q Consensus       216 aD~gN~rIrkI~~~g~~-~~-~~~~~g~P~GIav~~g~g~~Gy~~a  259 (488)
                      ++.++++|++|++.+.. .. .......|.++|+. +.+-.-|+..
T Consensus       242 a~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg-~d~~~lyVt~  286 (314)
T d1pjxa_         242 ANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFK-PQTKTIFVTE  286 (314)
T ss_dssp             EEETTTEEEEECTTCBSCSEEEECSSSCEEEEEEC-TTSSEEEEEE
T ss_pred             EEcCCCEEEEEeCCCCEEEEEEECCCCCEEEEEEe-CCCCEEEEEE
Confidence            99999999999988643 23 23334578888884 3443456644

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=1.8e-10  Score=110.74  Aligned_cols=134  Identities=16%  Similarity=0.101  Sum_probs=102.7

Q ss_pred             CCCceEEEEcc-CCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcC-CCcEEEE
Q 011333           82 GIEPYSVEVLP-GGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDD-RGNIYIA  159 (488)
Q Consensus        82 l~~P~GIaVd~-dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~-dG~LYVA  159 (488)
                      +..|.|||+|. .++||++|..+++|.+++.+|..   ...+...               .+..|.+|++|+ +|.||++
T Consensus        76 ~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~---~~~~~~~---------------~~~~P~~l~vd~~~g~ly~~  137 (266)
T d1ijqa1          76 IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK---RKTLFRE---------------NGSKPRAIVVDPVHGFMYWT  137 (266)
T ss_dssp             CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSS---EEEEEEC---------------TTCCEEEEEEETTTTEEEEE
T ss_pred             CCCcceEEEeeccceEEEEecCCCEEEeEecCCce---EEEEEcC---------------CCCCcceEEEEcccCeEEEe
Confidence            45899999996 77899999999999999998632   2222221               267899999998 7899999


Q ss_pred             ECCC-CEEEEEc-CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCceEEe
Q 011333          160 DTMN-MAIRKIS-DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCAYQ  236 (488)
Q Consensus       160 D~~N-~rIrkid-~gg-VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g~~~~~~  236 (488)
                      |.++ .+|.+.+ +|. ..++...                .+..|++|++....+.||++|..+++|.+++++|..+...
T Consensus       138 ~~~~~~~I~r~~~dGs~~~~l~~~----------------~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~  201 (266)
T d1ijqa1         138 DWGTPAKIKKGGLNGVDIYSLVTE----------------NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTI  201 (266)
T ss_dssp             ECSSSCEEEEEETTSCCEEEEECS----------------SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred             ccCCCcceeEeccCCCceeccccc----------------ccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEE
Confidence            9874 5899998 555 5555432                2567999995445788999999999999999998765432


Q ss_pred             ----ccCCCcceEEEEe
Q 011333          237 ----YGSSFPLGIAVLL  249 (488)
Q Consensus       237 ----~~~g~P~GIav~~  249 (488)
                          .....|.+|+++.
T Consensus       202 ~~~~~~~~~p~~lav~~  218 (266)
T d1ijqa1         202 LEDEKRLAHPFSLAVFE  218 (266)
T ss_dssp             EECTTTTSSEEEEEEET
T ss_pred             EeCCCcccccEEEEEEC
Confidence                2234688999884

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.22  E-value=1.3e-10  Score=111.71  Aligned_cols=131  Identities=16%  Similarity=0.192  Sum_probs=99.5

Q ss_pred             CCCceEEEEcc-CCcEEEEECCC--CeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCC-CcEE
Q 011333           82 GIEPYSVEVLP-GGELLILDSAN--SNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDR-GNIY  157 (488)
Q Consensus        82 l~~P~GIaVd~-dG~LYVaD~~n--~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~d-G~LY  157 (488)
                      +..|.+|++|| .|.||+++.+.  .+|.+.+++|.   ....++..               .+..|+|||+|.. +.||
T Consensus       121 l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~---~~~~i~~~---------------~~~~P~glaiD~~~~~lY  182 (263)
T d1npea_         121 LVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGT---NRRILAQD---------------NLGLPNGLTFDAFSSQLC  182 (263)
T ss_dssp             CSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSC---CCEEEECT---------------TCSCEEEEEEETTTTEEE
T ss_pred             ccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCC---Cceeeeee---------------cccccceEEEeecCcEEE
Confidence            56899999998 78899999764  47999999863   23333321               1678999999975 5699


Q ss_pred             EEECCCCEEEEEc-CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCce-E
Q 011333          158 IADTMNMAIRKIS-DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDC-A  234 (488)
Q Consensus       158 VAD~~N~rIrkid-~gg-VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g~~~-~  234 (488)
                      ++|...++|.+++ +|. +.+++.+                 +..|.+|+ ++ ++.||++|+++++|.+++..+... .
T Consensus       183 w~d~~~~~I~~~~~~g~~~~~v~~~-----------------~~~P~~la-v~-~~~lYwtd~~~~~I~~~~~~~g~~~~  243 (263)
T d1npea_         183 WVDAGTHRAECLNPAQPGRRKVLEG-----------------LQYPFAVT-SY-GKNLYYTDWKTNSVIAMDLAISKEMD  243 (263)
T ss_dssp             EEETTTTEEEEEETTEEEEEEEEEC-----------------CCSEEEEE-EE-TTEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             EEeCCCCEEEEEECCCCCeEEEECC-----------------CCCcEEEE-EE-CCEEEEEECCCCEEEEEECCCCccce
Confidence            9999999999999 554 5555432                 45799999 45 689999999999999999975432 2


Q ss_pred             Ee--ccCCCcceEEEEe
Q 011333          235 YQ--YGSSFPLGIAVLL  249 (488)
Q Consensus       235 ~~--~~~g~P~GIav~~  249 (488)
                      ..  .....|.||++.-
T Consensus       244 ~~~~~~~~~~~gi~v~~  260 (263)
T d1npea_         244 TFHPHKQTRLYGITIAL  260 (263)
T ss_dssp             EECCSSCCCCCCEEEEC
T ss_pred             EECCCCCCCcceEEEeC
Confidence            22  3446789999864

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.21  E-value=7.2e-10  Score=106.50  Aligned_cols=134  Identities=16%  Similarity=0.199  Sum_probs=103.9

Q ss_pred             CCCceEEEEcc-CCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcC-CCcEEEE
Q 011333           82 GIEPYSVEVLP-GGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDD-RGNIYIA  159 (488)
Q Consensus        82 l~~P~GIaVd~-dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~-dG~LYVA  159 (488)
                      +..|.+||+|. .++||++|...++|.++++++.   ...+++..               .+..|.+|++|+ .|.||++
T Consensus        78 ~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~---~~~~l~~~---------------~l~~p~~l~vdp~~g~ly~t  139 (263)
T d1npea_          78 LGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGT---QRRVLFDT---------------GLVNPRGIVTDPVRGNLYWT  139 (263)
T ss_dssp             CCCEEEEEEETTTTEEEEEETTTTEEEEEETTSC---SCEEEECS---------------SCSSEEEEEEETTTTEEEEE
T ss_pred             cccccEEEEeccCCeEEEeccCCCEEEEEecCCc---eEEEEecc---------------cccCCcEEEEecccCcEEEe
Confidence            45799999996 7789999999999999999973   23444432               167899999998 6789999


Q ss_pred             ECCC--CEEEEEc-CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCceE-
Q 011333          160 DTMN--MAIRKIS-DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCA-  234 (488)
Q Consensus       160 D~~N--~rIrkid-~gg-VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g~~~~-  234 (488)
                      |.+.  .+|.+.+ +|. ..++...                .+..|.+|++...++.||++|.+.++|.+++++|..+. 
T Consensus       140 ~~~~~~~~I~r~~~dG~~~~~i~~~----------------~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~  203 (263)
T d1npea_         140 DWNRDNPKIETSHMDGTNRRILAQD----------------NLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRK  203 (263)
T ss_dssp             ECCSSSCEEEEEETTSCCCEEEECT----------------TCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEE
T ss_pred             ecCCCCcEEEEecCCCCCceeeeee----------------cccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEE
Confidence            9763  4798888 554 4444421                25689999954567899999999999999999986554 


Q ss_pred             EeccCCCcceEEEEe
Q 011333          235 YQYGSSFPLGIAVLL  249 (488)
Q Consensus       235 ~~~~~g~P~GIav~~  249 (488)
                      ...+...|.||+++.
T Consensus       204 v~~~~~~P~~lav~~  218 (263)
T d1npea_         204 VLEGLQYPFAVTSYG  218 (263)
T ss_dssp             EEECCCSEEEEEEET
T ss_pred             EECCCCCcEEEEEEC
Confidence            355667899999973

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.21  E-value=7.4e-11  Score=113.90  Aligned_cols=114  Identities=16%  Similarity=0.083  Sum_probs=91.8

Q ss_pred             CceEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEECCC
Q 011333           84 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMN  163 (488)
Q Consensus        84 ~P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~N  163 (488)
                      .|.+||+++||+|||+|..+++|+++++++    ....++..                -..|.||+++++|+|||++..+
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g----~~~~~~~~----------------~~~~~gla~~~dG~l~v~~~~~   88 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVSITPDG----NQQIHATV----------------EGKVSGLAFTSNGDLVATGWNA   88 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTTC----CEEEEEEC----------------SSEEEEEEECTTSCEEEEEECT
T ss_pred             CcCCEEECCCCCEEEEeCCCCEEEEEeCCC----CEEEEEcC----------------CCCcceEEEcCCCCeEEEecCC
Confidence            588999999999999999999999999985    44455432                2348999999999999999988


Q ss_pred             CEEEEEc----CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCce
Q 011333          164 MAIRKIS----DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDC  233 (488)
Q Consensus       164 ~rIrkid----~ggVttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g~~~  233 (488)
                      +.|.+++    .+.++.++....               ...|++++ ++.+|++||+|..+++|+++++.+...
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~n~i~-~~~~g~~~v~~~~~~~i~~~~~~~~~~  146 (302)
T d2p4oa1          89 DSIPVVSLVKSDGTVETLLTLPD---------------AIFLNGIT-PLSDTQYLTADSYRGAIWLIDVVQPSG  146 (302)
T ss_dssp             TSCEEEEEECTTSCEEEEEECTT---------------CSCEEEEE-ESSSSEEEEEETTTTEEEEEETTTTEE
T ss_pred             ceEEEEEecccccceeeccccCC---------------ccccceeE-EccCCCEEeeccccccceeeeccCCcc
Confidence            8888776    234555554321               34689999 799999999999999999999887543

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=3.6e-10  Score=108.61  Aligned_cols=133  Identities=19%  Similarity=0.229  Sum_probs=100.4

Q ss_pred             CCCceEEEEcc-CCcEEEEECCC-CeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCC-CcEEE
Q 011333           82 GIEPYSVEVLP-GGELLILDSAN-SNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDR-GNIYI  158 (488)
Q Consensus        82 l~~P~GIaVd~-dG~LYVaD~~n-~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~d-G~LYV  158 (488)
                      +.+|.+|++|+ +|.||++|.+. .+|.+.+++|.   ....++..               .+..|+||++|.. +.||+
T Consensus       119 ~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs---~~~~l~~~---------------~~~~p~gl~iD~~~~~lYw  180 (266)
T d1ijqa1         119 GSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV---DIYSLVTE---------------NIQWPNGITLDLLSGRLYW  180 (266)
T ss_dssp             TCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC---CEEEEECS---------------SCSCEEEEEEETTTTEEEE
T ss_pred             CCCcceEEEEcccCeEEEeccCCCcceeEeccCCC---ceeccccc---------------ccceeeEEEeeccccEEEE
Confidence            56899999998 78999999764 58999999973   34444432               1678999999975 46999


Q ss_pred             EECCCCEEEEEc-CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCC-ce-E
Q 011333          159 ADTMNMAIRKIS-DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFD-DC-A  234 (488)
Q Consensus       159 AD~~N~rIrkid-~gg-VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g~-~~-~  234 (488)
                      +|...++|.+++ +|. ..++....              ..+..|.+|+ ++ ++.||++|..+++|.+++.... .. .
T Consensus       181 ~d~~~~~I~~~~~dG~~~~~~~~~~--------------~~~~~p~~la-v~-~~~ly~td~~~~~I~~~~~~~g~~~~~  244 (266)
T d1ijqa1         181 VDSKLHSISSIDVNGGNRKTILEDE--------------KRLAHPFSLA-VF-EDKVFWTDIINEAIFSANRLTGSDVNL  244 (266)
T ss_dssp             EETTTTEEEEEETTSCSCEEEEECT--------------TTTSSEEEEE-EE-TTEEEEEETTTTEEEEEETTTCCCCEE
T ss_pred             ecCCcCEEEEEECCCCCEEEEEeCC--------------CcccccEEEE-EE-CCEEEEEECCCCeEEEEECCCCcceEE
Confidence            999999999999 554 45554321              1256899999 55 5899999999999999987642 23 2


Q ss_pred             EeccCCCcceEEEE
Q 011333          235 YQYGSSFPLGIAVL  248 (488)
Q Consensus       235 ~~~~~g~P~GIav~  248 (488)
                      ...+...|.+|.+.
T Consensus       245 ~~~~~~~p~~i~v~  258 (266)
T d1ijqa1         245 LAENLLSPEDMVLF  258 (266)
T ss_dssp             EECSCSCCCCEEEE
T ss_pred             EEcCCCCceEEEEE
Confidence            34455678888775

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.11  E-value=3e-09  Score=102.27  Aligned_cols=145  Identities=12%  Similarity=-0.026  Sum_probs=103.7

Q ss_pred             CCceEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEECC
Q 011333           83 IEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTM  162 (488)
Q Consensus        83 ~~P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~  162 (488)
                      ..|.+|++++||+|||++..++.|.+++..+.. +....++...              ....|++|+++++|++||+|..
T Consensus        68 ~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~--------------~~~~~n~i~~~~~g~~~v~~~~  132 (302)
T d2p4oa1          68 GKVSGLAFTSNGDLVATGWNADSIPVVSLVKSD-GTVETLLTLP--------------DAIFLNGITPLSDTQYLTADSY  132 (302)
T ss_dssp             SEEEEEEECTTSCEEEEEECTTSCEEEEEECTT-SCEEEEEECT--------------TCSCEEEEEESSSSEEEEEETT
T ss_pred             CCcceEEEcCCCCeEEEecCCceEEEEEecccc-cceeeccccC--------------CccccceeEEccCCCEEeeccc
Confidence            379999999999999999988888888765322 4445554431              1456999999999999999999


Q ss_pred             CCEEEEEc-CCCc-EEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCceE----Ee
Q 011333          163 NMAIRKIS-DSGV-TTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCA----YQ  236 (488)
Q Consensus       163 N~rIrkid-~ggV-ttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g~~~~----~~  236 (488)
                      +.+|.+++ .++. ..+........      ......+..|++|+. + .+.||++++.+++|++++..+....    ..
T Consensus       133 ~~~i~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~ngi~~-~-~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~  204 (302)
T d2p4oa1         133 RGAIWLIDVVQPSGSIWLEHPMLAR------SNSESVFPAANGLKR-F-GNFLYVSNTEKMLLLRIPVDSTDKPGEPEIF  204 (302)
T ss_dssp             TTEEEEEETTTTEEEEEEECGGGSC------SSTTCCSCSEEEEEE-E-TTEEEEEETTTTEEEEEEBCTTSCBCCCEEE
T ss_pred             cccceeeeccCCcceeEecCCccce------eeccCcccccccccc-c-CCceeeecCCCCeEEeccccccccccccccc
Confidence            99999999 4443 33332221110      111234567889884 3 5799999999999999998764322    22


Q ss_pred             ccCCCcceEEEEec
Q 011333          237 YGSSFPLGIAVLLA  250 (488)
Q Consensus       237 ~~~g~P~GIav~~g  250 (488)
                      .....|.||+++..
T Consensus       205 ~~~~~pdgia~d~d  218 (302)
T d2p4oa1         205 VEQTNIDDFAFDVE  218 (302)
T ss_dssp             EESCCCSSEEEBTT
T ss_pred             cCCCCCcceEECCC
Confidence            34567999999965

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.86  E-value=2e-08  Score=97.18  Aligned_cols=152  Identities=11%  Similarity=0.034  Sum_probs=106.3

Q ss_pred             CceEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEECC-
Q 011333           84 EPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTM-  162 (488)
Q Consensus        84 ~P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~-  162 (488)
                      .|.+++.+++|.|+|+..  +.|.++++.+   ++++.++....+           ...+.|+++++|++|+|||++.. 
T Consensus        60 ~~~~i~~~~dg~l~va~~--~gl~~~d~~t---g~~~~l~~~~~~-----------~~~~~~nd~~vd~~G~iw~~~~~~  123 (295)
T d2ghsa1          60 MGSALAKISDSKQLIASD--DGLFLRDTAT---GVLTLHAELESD-----------LPGNRSNDGRMHPSGALWIGTMGR  123 (295)
T ss_dssp             CEEEEEEEETTEEEEEET--TEEEEEETTT---CCEEEEECSSTT-----------CTTEEEEEEEECTTSCEEEEEEET
T ss_pred             CcEEEEEecCCCEEEEEe--CccEEeeccc---ceeeEEeeeecC-----------CCcccceeeEECCCCCEEEEeccc
Confidence            578899999999999974  5899999986   456666543211           23567999999999999999853 


Q ss_pred             -----CCEEEEEcCCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCceE---
Q 011333          163 -----NMAIRKISDSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCA---  234 (488)
Q Consensus       163 -----N~rIrkid~ggVttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g~~~~---  234 (488)
                           ...+.+++++.++.+...                 +..|+++++.+....||++|+.+++|++++.+.+...   
T Consensus       124 ~~~~~~g~l~~~~~g~~~~~~~~-----------------~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~  186 (295)
T d2ghsa1         124 KAETGAGSIYHVAKGKVTKLFAD-----------------ISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTG  186 (295)
T ss_dssp             TCCTTCEEEEEEETTEEEEEEEE-----------------ESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSS
T ss_pred             cccccceeEeeecCCcEEEEeec-----------------cCCcceeeecCCCceEEEeecccceeeEeeeccccccccc
Confidence                 235667777777666532                 5578999966666679999999999999998753221   


Q ss_pred             ----E---eccCCCcceEEEEecCCceEEEEEEEEeccceEEecc
Q 011333          235 ----Y---QYGSSFPLGIAVLLAAGFFGYMLALLQRRVGTIVSSQ  272 (488)
Q Consensus       235 ----~---~~~~g~P~GIav~~g~g~~Gy~~a~l~~~~g~~~~s~  272 (488)
                          .   ....+.|.|+++|..    |++|...-..-+..+.++
T Consensus       187 ~~~~~~~~~~~~g~pdG~~vD~~----GnlWva~~~~g~V~~~dp  227 (295)
T d2ghsa1         187 KAEVFIDSTGIKGGMDGSVCDAE----GHIWNARWGEGAVDRYDT  227 (295)
T ss_dssp             CCEEEEECTTSSSEEEEEEECTT----SCEEEEEETTTEEEEECT
T ss_pred             ceEEEeccCcccccccceEEcCC----CCEEeeeeCCCceEEecC
Confidence                1   123457999999855    445444333323444443

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.81  E-value=3e-08  Score=95.83  Aligned_cols=143  Identities=12%  Similarity=0.098  Sum_probs=100.1

Q ss_pred             CCCCceEEEEccCCcEEEEECC------CCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCC
Q 011333           81 LGIEPYSVEVLPGGELLILDSA------NSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRG  154 (488)
Q Consensus        81 ~l~~P~GIaVd~dG~LYVaD~~------n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG  154 (488)
                      ..+.|.++.+|++|+||+++..      .+.++++..     +.+..+...                +..|+|+++++++
T Consensus       101 ~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~-----g~~~~~~~~----------------~~~~Ng~~~s~d~  159 (295)
T d2ghsa1         101 PGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAK-----GKVTKLFAD----------------ISIPNSICFSPDG  159 (295)
T ss_dssp             TTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEET-----TEEEEEEEE----------------ESSEEEEEECTTS
T ss_pred             CcccceeeEECCCCCEEEEeccccccccceeEeeecC-----CcEEEEeec----------------cCCcceeeecCCC
Confidence            3457899999999999999743      245666653     234444332                6779999999988


Q ss_pred             c-EEEEECCCCEEEEEc-CCC-------cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEE
Q 011333          155 N-IYIADTMNMAIRKIS-DSG-------VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIRE  225 (488)
Q Consensus       155 ~-LYVAD~~N~rIrkid-~gg-------VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrk  225 (488)
                      + +|++|+.+++|.+++ +..       ...++...              .....|.+++ +|.+|+||||..+.++|.+
T Consensus       160 ~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~--------------~~~g~pdG~~-vD~~GnlWva~~~~g~V~~  224 (295)
T d2ghsa1         160 TTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDST--------------GIKGGMDGSV-CDAEGHIWNARWGEGAVDR  224 (295)
T ss_dssp             CEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECT--------------TSSSEEEEEE-ECTTSCEEEEEETTTEEEE
T ss_pred             ceEEEeecccceeeEeeecccccccccceEEEeccC--------------cccccccceE-EcCCCCEEeeeeCCCceEE
Confidence            6 999999999999997 322       11111110              0123589999 8999999999999999999


Q ss_pred             EEcCCCceEEec-cCCCcceEEEEecCCceEEEEE
Q 011333          226 IQLHFDDCAYQY-GSSFPLGIAVLLAAGFFGYMLA  259 (488)
Q Consensus       226 I~~~g~~~~~~~-~~g~P~GIav~~g~g~~Gy~~a  259 (488)
                      |+++|....... ....|+.+|+.....-.-|+++
T Consensus       225 ~dp~G~~~~~i~lP~~~~T~~~FGG~d~~~LyvTt  259 (295)
T d2ghsa1         225 YDTDGNHIARYEVPGKQTTCPAFIGPDASRLLVTS  259 (295)
T ss_dssp             ECTTCCEEEEEECSCSBEEEEEEESTTSCEEEEEE
T ss_pred             ecCCCcEeeEecCCCCceEEEEEeCCCCCEEEEEE
Confidence            999987554432 2345777777654444556554

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=98.28  E-value=3.6e-06  Score=83.32  Aligned_cols=138  Identities=11%  Similarity=0.054  Sum_probs=90.7

Q ss_pred             CCceEEEE--ccCCc--EEEEEC--CCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcE
Q 011333           83 IEPYSVEV--LPGGE--LLILDS--ANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNI  156 (488)
Q Consensus        83 ~~P~GIaV--d~dG~--LYVaD~--~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~L  156 (488)
                      ..|+||.+  +.+|.  |||+++  .+.+|-.++.+..  +...+..+..           ....+..|++|++..+|.+
T Consensus        97 f~PhGi~l~~~~dg~~~L~vvnH~~~~~~ieif~~~~~--~~~l~~~~~v-----------~~~~~~~pNDv~~~~~g~f  163 (340)
T d1v04a_          97 FNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEE--EKSLLHLKTI-----------RHKLLPSVNDIVAVGPEHF  163 (340)
T ss_dssp             CCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETT--TTEEEEEEEE-----------CCTTCSSEEEEEEEETTEE
T ss_pred             eeccceeEEEcCCCcEEEEEEeccCCCceeEEEEEeCC--CCeEEEEeec-----------CCccccCccceEEecCCCE
Confidence            48999987  44664  888886  4556655544311  1223333331           1124788999999999999


Q ss_pred             EEEECC-----------------CCEEEEEcCCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECC
Q 011333          157 YIADTM-----------------NMAIRKISDSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRG  219 (488)
Q Consensus       157 YVAD~~-----------------N~rIrkid~ggVttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~g  219 (488)
                      |+++..                 ...|..++.+.+..++.                 .|..|+||++.++...|||+++.
T Consensus       164 y~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~~~~~~~-----------------~l~~pNGI~~s~d~~~lyVa~t~  226 (340)
T d1v04a_         164 YATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRVVAE-----------------GFDFANGINISPDGKYVYIAELL  226 (340)
T ss_dssp             EEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSCEEEEEE-----------------EESSEEEEEECTTSSEEEEEEGG
T ss_pred             EEecCccCcChhhhhhhHhhcCCceeEEEEcCCceEEEcC-----------------CCCccceeEECCCCCEEEEEeCC
Confidence            999732                 22455555555554443                 25689999954445689999999


Q ss_pred             CCeEEEEEcCCCceE----EeccCCCcceEEEEec
Q 011333          220 NRAIREIQLHFDDCA----YQYGSSFPLGIAVLLA  250 (488)
Q Consensus       220 N~rIrkI~~~g~~~~----~~~~~g~P~GIav~~g  250 (488)
                      .++|+++++.++...    ...-.+.|++|.++..
T Consensus       227 ~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~  261 (340)
T d1v04a_         227 AHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPV  261 (340)
T ss_dssp             GTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTT
T ss_pred             CCeEEEEEeCCCcccceEEEecCCCCCCccEEecC
Confidence            999999998865322    1234467999999853

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.07  E-value=6.2e-05  Score=73.78  Aligned_cols=159  Identities=14%  Similarity=0.050  Sum_probs=92.6

Q ss_pred             CCceEEEEccCCc-EEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCc-EEEEE
Q 011333           83 IEPYSVEVLPGGE-LLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-IYIAD  160 (488)
Q Consensus        83 ~~P~GIaVd~dG~-LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~-LYVAD  160 (488)
                      .+|++++++|||. ||++|.+.++|+.++.+..  +.+...........           -..|++|+++++|. +||+.
T Consensus       145 ~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~--g~~~~~~~~~~~~~-----------g~gPr~i~f~pdg~~~yv~~  211 (365)
T d1jofa_         145 TGIHGMVFDPTETYLYSADLTANKLWTHRKLAS--GEVELVGSVDAPDP-----------GDHPRWVAMHPTGNYLYALM  211 (365)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEEECTT--SCEEEEEEEECSST-----------TCCEEEEEECTTSSEEEEEE
T ss_pred             CcceEEEECCCCCEEEEeeCCCCEEEEEEccCC--CceeeccceeecCC-----------CCceEEEEECCCCceEEEec
Confidence            3689999999998 9999999999988864321  22222211100000           24699999999996 89999


Q ss_pred             CCCCEEEEEc-C-CC-c--EEEeCCccCCCCCC-CCCCcccccCCCCCeeEEECCCC-eEEEEECCCCe-----EEEEEc
Q 011333          161 TMNMAIRKIS-D-SG-V--TTIAGGKWGRGGGH-VDGPSEDAKFSNDFDVVYIGSSC-SLLVIDRGNRA-----IREIQL  228 (488)
Q Consensus       161 ~~N~rIrkid-~-gg-V--ttIaGg~~g~~~g~-~dG~~~~a~f~~P~gIa~vd~~G-~LYVaD~gN~r-----IrkI~~  228 (488)
                      ...+.|..++ + +. .  .++....... .+. ............|..|++ +++| .|||+.++.+.     |..+..
T Consensus       212 e~~~~V~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~-spdG~~lyvsnr~~~~~~~~~i~~~~~  289 (365)
T d1jofa_         212 EAGNRICEYVIDPATHMPVYTHHSFPLIP-PGIPDRDPETGKGLYRADVCAL-TFSGKYMFASSRANKFELQGYIAGFKL  289 (365)
T ss_dssp             TTTTEEEEEEECTTTCCEEEEEEEEESSC-TTCCCBCTTTSSBSEEEEEEEE-CTTSSEEEEEEEESSTTSCCEEEEEEE
T ss_pred             cCCCEEEEEEecCCCceEEEEeeeecccc-ccccccccccccccCCccceEE-CCCCCEEEEEcccCCCccceEEEEEEe
Confidence            9999998887 3 32 2  2221111000 000 011112223445778884 5555 68999886554     666665


Q ss_pred             CCCceE------E--eccCCCcceEEEEecCCceEE
Q 011333          229 HFDDCA------Y--QYGSSFPLGIAVLLAAGFFGY  256 (488)
Q Consensus       229 ~g~~~~------~--~~~~g~P~GIav~~g~g~~Gy  256 (488)
                      +.....      .  ......|.+|++...+|-+-|
T Consensus       290 ~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~  325 (365)
T d1jofa_         290 RDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMA  325 (365)
T ss_dssp             CTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEE
T ss_pred             cCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEE
Confidence            432111      1  122357999998754444333

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=97.97  E-value=0.00017  Score=64.95  Aligned_cols=117  Identities=18%  Similarity=0.247  Sum_probs=80.0

Q ss_pred             cEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCc-EEEEECCCCEEEEEc-C-
Q 011333           95 ELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-IYIADTMNMAIRKIS-D-  171 (488)
Q Consensus        95 ~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~-LYVAD~~N~rIrkid-~-  171 (488)
                      .+||++..++.|.++|.++++  .+.++ ..                -..|.+|+++++|+ |||++..+++|+.+| . 
T Consensus         3 ~~yV~~~~~~~v~v~D~~t~~--~~~~i-~~----------------g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t   63 (301)
T d1l0qa2           3 FAYIANSESDNISVIDVTSNK--VTATI-PV----------------GSNPMGAVISPDGTKVYVANAHSNDVSIIDTAT   63 (301)
T ss_dssp             EEEEEETTTTEEEEEETTTTE--EEEEE-EC----------------SSSEEEEEECTTSSEEEEEEGGGTEEEEEETTT
T ss_pred             EEEEEECCCCEEEEEECCCCe--EEEEE-EC----------------CCCceEEEEeCCCCEEEEEECCCCEEEEEECCC
Confidence            479999999999999987632  12222 11                12489999999997 899999999999999 3 


Q ss_pred             CC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCceEE-eccCCCcceEEEE
Q 011333          172 SG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCAY-QYGSSFPLGIAVL  248 (488)
Q Consensus       172 gg-VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g~~~~~-~~~~g~P~GIav~  248 (488)
                      +. +.++...                  ..|.++++..+...++++......++.++.....+.. ......|..+++.
T Consensus        64 ~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (301)
T d1l0qa2          64 NNVIATVPAG------------------SSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALS  124 (301)
T ss_dssp             TEEEEEEECS------------------SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEEC
T ss_pred             Cceeeeeecc------------------ccccccccccccccccccccccceeeecccccceeeeeccccccceEEEee
Confidence            33 3444322                  2578888555555688889888899998887654433 2333344444443

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=97.93  E-value=0.00011  Score=67.41  Aligned_cols=118  Identities=9%  Similarity=-0.001  Sum_probs=79.4

Q ss_pred             CceEEEEccCCc-EEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCc-EEEEEC
Q 011333           84 EPYSVEVLPGGE-LLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-IYIADT  161 (488)
Q Consensus        84 ~P~GIaVd~dG~-LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~-LYVAD~  161 (488)
                      .|.+|+++|||. ||++....++|+.++.+...  ....+.+..             ..-..|.+|++++||+ ||+++.
T Consensus        38 ~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~--~~~~~~~~~-------------~~~~~p~~l~~spDg~~l~v~~~  102 (333)
T d1ri6a_          38 QVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDD--GALTFAAES-------------ALPGSLTHISTDHQGQFVFVGSY  102 (333)
T ss_dssp             CCCCEEECTTSSEEEEEETTTTEEEEEEECTTT--CCEEEEEEE-------------ECSSCCSEEEECTTSSEEEEEET
T ss_pred             CEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCC--CcEEEeeec-------------ccCCCceEEEEcCCCCEEeeccc
Confidence            789999999997 88999888888877654321  122222210             1124599999999996 999998


Q ss_pred             CCCEEEEEc--CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCC
Q 011333          162 MNMAIRKIS--DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHF  230 (488)
Q Consensus       162 ~N~rIrkid--~ggVttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g  230 (488)
                      .+..|+.++  ............              .-..|.++++.+....+++++.....|+.++...
T Consensus       103 ~~~~v~~~~~~~~~~~~~~~~~~--------------~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~  159 (333)
T d1ri6a_         103 NAGNVSVTRLEDGLPVGVVDVVE--------------GLDGCHSANISPDNRTLWVPALKQDRICLFTVSD  159 (333)
T ss_dssp             TTTEEEEEEEETTEEEEEEEEEC--------------CCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred             CCCceeeeccccccceecccccC--------------CCccceEEEeeecceeeeccccccceeeEEEecc
Confidence            888888877  333222211100              1225778885444556899999999999888764

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=97.81  E-value=0.00044  Score=62.15  Aligned_cols=129  Identities=17%  Similarity=0.279  Sum_probs=85.4

Q ss_pred             CCceEEEEccCCc-EEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCc-EEEEE
Q 011333           83 IEPYSVEVLPGGE-LLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-IYIAD  160 (488)
Q Consensus        83 ~~P~GIaVd~dG~-LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~-LYVAD  160 (488)
                      ..|.+|++++||. |||++..+++|..++..+..  .+.++..                 ...|.+++++++|. ++++.
T Consensus        32 ~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~--~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~   92 (301)
T d1l0qa2          32 SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNN--VIATVPA-----------------GSSPQGVAVSPDGKQVYVTN   92 (301)
T ss_dssp             SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTE--EEEEEEC-----------------SSSEEEEEECTTSSEEEEEE
T ss_pred             CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCc--eeeeeec-----------------cccccccccccccccccccc
Confidence            3799999999997 88999999999999987532  2333322                 23588999999986 78888


Q ss_pred             CCCCEEEEEc-C-CCc-EEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCceEE-e
Q 011333          161 TMNMAIRKIS-D-SGV-TTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCAY-Q  236 (488)
Q Consensus       161 ~~N~rIrkid-~-ggV-ttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g~~~~~-~  236 (488)
                      .....++.++ . +.. ..+..                  ...|..+++.++...++++......+..++.....+.. .
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (301)
T d1l0qa2          93 MASSTLSVIDTTSNTVAGTVKT------------------GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTV  154 (301)
T ss_dssp             TTTTEEEEEETTTTEEEEEEEC------------------SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             cccceeeecccccceeeeeccc------------------cccceEEEeecCCCeeeeeeccccceeeeeccccceeeec
Confidence            8888888888 3 332 33321                  12456777444444567777777778887776544432 2


Q ss_pred             ccCCCcceEEEE
Q 011333          237 YGSSFPLGIAVL  248 (488)
Q Consensus       237 ~~~g~P~GIav~  248 (488)
                      .....|..+++.
T Consensus       155 ~~~~~~~~~~~~  166 (301)
T d1l0qa2         155 SVGRSPKGIAVT  166 (301)
T ss_dssp             ECCSSEEEEEEC
T ss_pred             ccCCCceEEEee
Confidence            233345555544

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=97.67  E-value=0.00049  Score=69.83  Aligned_cols=80  Identities=18%  Similarity=0.265  Sum_probs=55.3

Q ss_pred             CCceeEEeecCCCCCCCceEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcce
Q 011333           68 SGYTVETVFDGSKLGIEPYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKG  147 (488)
Q Consensus        68 dG~~~~~~~~G~~~l~~P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~G  147 (488)
                      .++..+....+   +.+|++|++.+||+|||++...++|++++..+   +....+.+...-. ....|      -..-.|
T Consensus        15 ~~f~~~~ia~~---L~~P~~la~~pdg~llVter~~G~i~~v~~~~---g~~~~i~~~~~~~-~~~~g------e~GLLg   81 (450)
T d1crua_          15 ENFDKKVILSN---LNKPHALLWGPDNQIWLTERATGKILRVNPES---GSVKTVFQVPEIV-NDADG------QNGLLG   81 (450)
T ss_dssp             TTSCEEEEECC---CSSEEEEEECTTSCEEEEETTTCEEEEECTTT---CCEEEEEECTTCC-CCTTS------SCSEEE
T ss_pred             CCcEEEEEECC---CCCceEEEEeCCCeEEEEEecCCEEEEEECCC---CcEeecccCCccc-cccCC------CCceee
Confidence            46777777664   67999999999999999998888999999776   3455555432110 00010      123468


Q ss_pred             EEEcCC----CcEEEEE
Q 011333          148 LTVDDR----GNIYIAD  160 (488)
Q Consensus       148 IAvD~d----G~LYVAD  160 (488)
                      ||++++    +.||++-
T Consensus        82 ia~~Pdf~~n~~iYvsy   98 (450)
T d1crua_          82 FAFHPDFKNNPYIYISG   98 (450)
T ss_dssp             EEECTTTTTSCEEEEEE
T ss_pred             EEeCCCCccCCEEEEEE
Confidence            999974    7799964

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=97.65  E-value=0.00053  Score=62.76  Aligned_cols=123  Identities=8%  Similarity=-0.033  Sum_probs=79.1

Q ss_pred             cEEEEECCCCeEEEEeCCCCcccccEEE--ecCCCCccccCCCcccccccCCcceEEEcCCCc-EEEEECCCCEEEEEc-
Q 011333           95 ELLILDSANSNLYRISSSLSLYSRPKLV--AGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-IYIADTMNMAIRKIS-  170 (488)
Q Consensus        95 ~LYVaD~~n~rI~kid~~g~~~g~i~tv--aG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~-LYVAD~~N~rIrkid-  170 (488)
                      .+||+...++.|+.++.+..  +.+..+  ...                -..|.+|++++||+ ||++....++|+.++ 
T Consensus         5 ~v~v~~~~~~~I~v~~~~~~--~~l~~~~~~~~----------------~~~v~~la~spDG~~L~v~~~~d~~i~~~~i   66 (333)
T d1ri6a_           5 TVYIASPESQQIHVWNLNHE--GALTLTQVVDV----------------PGQVQPMVVSPDKRYLYVGVRPEFRVLAYRI   66 (333)
T ss_dssp             EEEEEEGGGTEEEEEEECTT--SCEEEEEEEEC----------------SSCCCCEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             EEEEECCCCCcEEEEEEcCC--CCeEEEEEEcC----------------CCCEeEEEEeCCCCEEEEEECCCCeEEEEEE
Confidence            48999999999999986531  222222  121                13588999999996 899998889998876 


Q ss_pred             -C-CCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCC-eEEEEECCCCeEEEEEcCCCceEE----eccCCCcc
Q 011333          171 -D-SGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSC-SLLVIDRGNRAIREIQLHFDDCAY----QYGSSFPL  243 (488)
Q Consensus       171 -~-ggVttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G-~LYVaD~gN~rIrkI~~~g~~~~~----~~~~g~P~  243 (488)
                       . +...++.+...              .-..|.+|++ +++| .||+++.++..|+.+.........    ......|.
T Consensus        67 ~~~~~~~~~~~~~~--------------~~~~p~~l~~-spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  131 (333)
T d1ri6a_          67 APDDGALTFAAESA--------------LPGSLTHIST-DHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCH  131 (333)
T ss_dssp             CTTTCCEEEEEEEE--------------CSSCCSEEEE-CTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBC
T ss_pred             eCCCCcEEEeeecc--------------cCCCceEEEE-cCCCCEEeecccCCCceeeeccccccceecccccCCCccce
Confidence             2 33333332111              1236899994 5555 699999989999888776543221    22334566


Q ss_pred             eEEEEec
Q 011333          244 GIAVLLA  250 (488)
Q Consensus       244 GIav~~g  250 (488)
                      ++++...
T Consensus       132 ~v~~s~d  138 (333)
T d1ri6a_         132 SANISPD  138 (333)
T ss_dssp             CCEECTT
T ss_pred             EEEeeec
Confidence            6666543

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=97.59  E-value=0.00041  Score=67.73  Aligned_cols=140  Identities=11%  Similarity=-0.022  Sum_probs=83.3

Q ss_pred             CCCCceEEEEccCCc-EEEEECCCCeEEEEeCCCCcccccEEEecCC---CCccccCCCcccccccCCcceEEEcCCCc-
Q 011333           81 LGIEPYSVEVLPGGE-LLILDSANSNLYRISSSLSLYSRPKLVAGSA---EGYSGHVDGKPREARMNHPKGLTVDDRGN-  155 (488)
Q Consensus        81 ~l~~P~GIaVd~dG~-LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~---~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~-  155 (488)
                      ....|.+++++++|. +||++...+.|..++.+......+.......   .+...  ...........|..|+++++|. 
T Consensus       191 ~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~~spdG~~  268 (365)
T d1jofa_         191 PGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPD--RDPETGKGLYRADVCALTFSGKY  268 (365)
T ss_dssp             TTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCC--BCTTTSSBSEEEEEEEECTTSSE
T ss_pred             CCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccc--cccccccccCCccceEECCCCCE
Confidence            356899999999997 8899999999998887643211111111100   01111  0111122345678999999996 


Q ss_pred             EEEEECCCCE-----EEEEc---CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCC-eEEEEECCCCeEEEE
Q 011333          156 IYIADTMNMA-----IRKIS---DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSC-SLLVIDRGNRAIREI  226 (488)
Q Consensus       156 LYVAD~~N~r-----Irkid---~ggVttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G-~LYVaD~gN~rIrkI  226 (488)
                      ||++.+..+.     |..++   .+.+.........           ...-..|.+|++.+.+| .|||++...+.|..+
T Consensus       269 lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~-----------~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~  337 (365)
T d1jofa_         269 MFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPT-----------PTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIY  337 (365)
T ss_dssp             EEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEEC-----------SSCCTTCCCEEECTTCTTEEEEECSSSCEEEEE
T ss_pred             EEEEcccCCCccceEEEEEEecCCCceeeEeEeeEE-----------EcCCCCccEEEecCCCCCEEEEEeCCCCeEEEE
Confidence            8999765332     54444   3334322110000           00123799999544355 599999999999998


Q ss_pred             EcCCCce
Q 011333          227 QLHFDDC  233 (488)
Q Consensus       227 ~~~g~~~  233 (488)
                      +.+++..
T Consensus       338 ~~~~~~l  344 (365)
T d1jofa_         338 RWKDEFL  344 (365)
T ss_dssp             EEETTEE
T ss_pred             EEeCCcC
Confidence            8776543

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=97.48  E-value=0.00021  Score=70.12  Aligned_cols=101  Identities=15%  Similarity=0.128  Sum_probs=68.3

Q ss_pred             CCCCCceEEEEccCCcEEEEECC-----------------CCeEEEEeCCCCcccccEEEecCCCCccccCCCccccccc
Q 011333           80 KLGIEPYSVEVLPGGELLILDSA-----------------NSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARM  142 (488)
Q Consensus        80 ~~l~~P~GIaVd~dG~LYVaD~~-----------------n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~L  142 (488)
                      ..+..|.+|++..+|.+|+++..                 .+.|+.++..     ...+++..                |
T Consensus       147 ~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~-----~~~~~~~~----------------l  205 (340)
T d1v04a_         147 KLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN-----DVRVVAEG----------------F  205 (340)
T ss_dssp             TTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSS-----CEEEEEEE----------------E
T ss_pred             ccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCC-----ceEEEcCC----------------C
Confidence            44678999999999999999632                 2355555543     23344332                6


Q ss_pred             CCcceEEEcCCC-cEEEEECCCCEEEEEc-C--CCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEEC-CCCeEEEEE
Q 011333          143 NHPKGLTVDDRG-NIYIADTMNMAIRKIS-D--SGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIG-SSCSLLVID  217 (488)
Q Consensus       143 n~P~GIAvD~dG-~LYVAD~~N~rIrkid-~--ggVttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd-~~G~LYVaD  217 (488)
                      ..|+||++++++ .||||++...+|++|+ +  +.++.+.-..-               -..|-.|. +| .+|.+|++-
T Consensus       206 ~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l---------------~~~pDNi~-~d~~~g~lwva~  269 (340)
T d1v04a_         206 DFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSF---------------DTLVDNIS-VDPVTGDLWVGC  269 (340)
T ss_dssp             SSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEC---------------SSEEEEEE-ECTTTCCEEEEE
T ss_pred             CccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecC---------------CCCCCccE-EecCCCEEEEEE
Confidence            789999999988 5999999999999988 2  22332221100               11466777 56 478888875

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=97.46  E-value=0.00047  Score=62.96  Aligned_cols=104  Identities=11%  Similarity=0.016  Sum_probs=68.5

Q ss_pred             EEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCc-EEEEECCCCE
Q 011333           87 SVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-IYIADTMNMA  165 (488)
Q Consensus        87 GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~-LYVAD~~N~r  165 (488)
                      |+++.++|+++++-...+.|..+|..+.+  .+.++.-.  +             -..|.+|++++||. |||++..+++
T Consensus         1 g~a~~~~~~~l~~~~~~~~v~v~D~~t~~--~~~t~~~~--~-------------~~~p~~l~~spDG~~l~v~~~~~~~   63 (346)
T d1jmxb_           1 GPALKAGHEYMIVTNYPNNLHVVDVASDT--VYKSCVMP--D-------------KFGPGTAMMAPDNRTAYVLNNHYGD   63 (346)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTTE--EEEEEECS--S-------------CCSSCEEEECTTSSEEEEEETTTTE
T ss_pred             CccCCCCCcEEEEEcCCCEEEEEECCCCC--EEEEEEcC--C-------------CCCcceEEECCCCCEEEEEECCCCc
Confidence            45778899988877777899999998632  12222111  0             12489999999996 8999999999


Q ss_pred             EEEEc-C-CC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEEC
Q 011333          166 IRKIS-D-SG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDR  218 (488)
Q Consensus       166 Irkid-~-gg-VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~  218 (488)
                      |..+| . +. +.++.....           .......|.++++.++...|||++.
T Consensus        64 v~~~d~~t~~~~~~~~~~~~-----------~~~~~~~~~~v~~s~DG~~l~v~~~  108 (346)
T d1jmxb_          64 IYGIDLDTCKNTFHANLSSV-----------PGEVGRSMYSFAISPDGKEVYATVN  108 (346)
T ss_dssp             EEEEETTTTEEEEEEESCCS-----------TTEEEECSSCEEECTTSSEEEEEEE
T ss_pred             EEEEeCccCeeeeeeccccc-----------ccccCCceEEEEEecCCCEEEEEec
Confidence            99999 3 33 333332211           1122356899995444456888874

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=96.94  E-value=0.011  Score=53.08  Aligned_cols=96  Identities=10%  Similarity=-0.013  Sum_probs=61.6

Q ss_pred             CCcceEEEcCCCc-EEEEECCCCEEEEEc--CCCc-EEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEEC
Q 011333          143 NHPKGLTVDDRGN-IYIADTMNMAIRKIS--DSGV-TTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDR  218 (488)
Q Consensus       143 n~P~GIAvD~dG~-LYVAD~~N~rIrkid--~ggV-ttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~  218 (488)
                      ..|.+|++++||+ |||+...++.|.++|  .+.+ .++.....            ......+.++++.+....||++..
T Consensus        34 ~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~------------~~~~~~~~~v~~s~dg~~l~~~~~  101 (337)
T d1pbyb_          34 PTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTP------------EERVKSLFGAALSPDGKTLAIYES  101 (337)
T ss_dssp             TCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBT------------TEEEECTTCEEECTTSSEEEEEEE
T ss_pred             CCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCC------------cccccceeeEEEcCCCcEEEEeec
Confidence            3588999999996 789998899999999  4443 33332110            112346788986655667787764


Q ss_pred             -----------CCCeEEEEEcCCCceEE-eccCCCcceEEEEec
Q 011333          219 -----------GNRAIREIQLHFDDCAY-QYGSSFPLGIAVLLA  250 (488)
Q Consensus       219 -----------gN~rIrkI~~~g~~~~~-~~~~g~P~GIav~~g  250 (488)
                                 ...++..++.....+.. ......|.++++...
T Consensus       102 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~d  145 (337)
T d1pbyb_         102 PVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARD  145 (337)
T ss_dssp             EEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTT
T ss_pred             CCcceeeeccccccceeeccccCCeEEEeccccCCceEEEEcCC
Confidence                       34567777766544432 233445777777643

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=96.56  E-value=0.039  Score=49.35  Aligned_cols=67  Identities=19%  Similarity=0.235  Sum_probs=46.1

Q ss_pred             CCCceEEEEccCCc-EEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCc-EEEE
Q 011333           82 GIEPYSVEVLPGGE-LLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-IYIA  159 (488)
Q Consensus        82 l~~P~GIaVd~dG~-LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~-LYVA  159 (488)
                      ...|.+|+++|||. |||+...++.|..+|..++   ++....... .         .......|.++++.++|+ +|++
T Consensus        33 ~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~---~~~~~~~~~-~---------~~~~~~~~~~v~~s~dg~~l~~~   99 (337)
T d1pbyb_          33 GPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTG---ETLGRIDLS-T---------PEERVKSLFGAALSPDGKTLAIY   99 (337)
T ss_dssp             TTCCCCEEECTTSSEEEEEETTTTEEEEEETTTC---CEEEEEECC-B---------TTEEEECTTCEEECTTSSEEEEE
T ss_pred             CCCccEEEECCCCCEEEEEECCCCeEEEEECCCC---cEEEEEecC-C---------CcccccceeeEEEcCCCcEEEEe
Confidence            34789999999997 7899988899999998863   332222110 0         011245688999999986 7776


Q ss_pred             EC
Q 011333          160 DT  161 (488)
Q Consensus       160 D~  161 (488)
                      ..
T Consensus       100 ~~  101 (337)
T d1pbyb_         100 ES  101 (337)
T ss_dssp             EE
T ss_pred             ec
Confidence            53

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=96.26  E-value=0.064  Score=52.54  Aligned_cols=143  Identities=6%  Similarity=-0.092  Sum_probs=84.2

Q ss_pred             CceEEEEccCCc-EEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEc----CCCc-EE
Q 011333           84 EPYSVEVLPGGE-LLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVD----DRGN-IY  157 (488)
Q Consensus        84 ~P~GIaVd~dG~-LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD----~dG~-LY  157 (488)
                      .|++++++|||. ||+++. .+.|.+++.++.....+..+ .                ....|.++++.    +||. ||
T Consensus        63 ~~~~v~fSpDG~~l~~~s~-dg~v~~~d~~t~~~~~~~~i-~----------------~~~~~~~~~~s~~~SpDG~~l~  124 (432)
T d1qksa2          63 AVHISRLSASGRYLFVIGR-DGKVNMIDLWMKEPTTVAEI-K----------------IGSEARSIETSKMEGWEDKYAI  124 (432)
T ss_dssp             CEEEEEECTTSCEEEEEET-TSEEEEEETTSSSCCEEEEE-E----------------CCSEEEEEEECCSTTCTTTEEE
T ss_pred             CeeEEEECCCCCEEEEEcC-CCCEEEEEeeCCCceEEEEE-e----------------cCCCCCCeEEecccCCCCCEEE
Confidence            699999999998 777765 46899999765321111111 1                12346677664    5886 78


Q ss_pred             EEECCCCEEEEEc--CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCce-
Q 011333          158 IADTMNMAIRKIS--DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDC-  233 (488)
Q Consensus       158 VAD~~N~rIrkid--~gg-VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g~~~-  233 (488)
                      ++....+.|+.+|  .+. +.++.+.....     +. ..-..-..+..|++..+...++|+....+.|..++...... 
T Consensus       125 vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~-----~~-~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~  198 (432)
T d1qksa2         125 AGAYWPPQYVIMDGETLEPKKIQSTRGMTY-----DE-QEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNL  198 (432)
T ss_dssp             EEEEETTEEEEEETTTCCEEEEEECCEECT-----TT-CCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEE
T ss_pred             EEcCCCCeEEEEeCccccceeeeccCCccc-----cc-eeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcc
Confidence            9998899999999  344 34444322111     00 00001123345664444456788888889999998764322 


Q ss_pred             --EEeccCCCcceEEEEec
Q 011333          234 --AYQYGSSFPLGIAVLLA  250 (488)
Q Consensus       234 --~~~~~~g~P~GIav~~g  250 (488)
                        ........|.++++...
T Consensus       199 ~~~~i~~g~~~~~~~~spd  217 (432)
T d1qksa2         199 KTTEISAERFLHDGGLDGS  217 (432)
T ss_dssp             EEEEEECCSSEEEEEECTT
T ss_pred             eEEEEcccCccccceECCC
Confidence              12223345677776643

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=95.62  E-value=0.27  Score=44.96  Aligned_cols=119  Identities=7%  Similarity=-0.079  Sum_probs=66.9

Q ss_pred             eEEEEccCCc-EEEEECC---------CCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCc
Q 011333           86 YSVEVLPGGE-LLILDSA---------NSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN  155 (488)
Q Consensus        86 ~GIaVd~dG~-LYVaD~~---------n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~  155 (488)
                      .+++++|||. ||++...         .+.|..+|..+.   +........        ..........|.++++.++|.
T Consensus        69 ~~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~---~~~~~~~~~--------~~~~~~~~~~~~~~~~s~dg~  137 (373)
T d2madh_          69 PNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTF---LPIADIELP--------DAPRFDVGPYSWMNANTPNNA  137 (373)
T ss_pred             ccEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCC---cEEEEEecC--------CcceeEeccCCCcEEEEeCCC
Confidence            3789999997 7777643         356888887753   222221111        001122345788999998885


Q ss_pred             -EEEEECC-CCEEEEEcCCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCce
Q 011333          156 -IYIADTM-NMAIRKISDSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDC  233 (488)
Q Consensus       156 -LYVAD~~-N~rIrkid~ggVttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g~~~  233 (488)
                       +||+... .+.+..++........                  ....|.++++.+....+|++....+.+..++.....+
T Consensus       138 ~~~v~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~  199 (373)
T d2madh_         138 DLLFFQFAAGPAVGLVVQGGSSDDQ------------------LLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAA  199 (373)
T ss_pred             cEEEEEEcCCCceEEeeccCCeEEE------------------EeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCcee
Confidence             6666533 3444444421111111                  1234566664444456778888888888877665433

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=95.52  E-value=0.081  Score=52.84  Aligned_cols=68  Identities=13%  Similarity=0.190  Sum_probs=46.3

Q ss_pred             cCCcceEEEcCCCcEEEEECCCCEEEEEc--CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECC----CCeEEE
Q 011333          142 MNHPKGLTVDDRGNIYIADTMNMAIRKIS--DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGS----SCSLLV  215 (488)
Q Consensus       142 Ln~P~GIAvD~dG~LYVAD~~N~rIrkid--~ggVttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~----~G~LYV  215 (488)
                      |..|++|++.++|+|||++....+|++++  ++.++++.+......  ...|   +.   .-.+|| +++    ++.|||
T Consensus        26 L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~--~~~g---e~---GLLgia-~~Pdf~~n~~iYv   96 (450)
T d1crua_          26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVN--DADG---QN---GLLGFA-FHPDFKNNPYIYI   96 (450)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCC--CTTS---SC---SEEEEE-ECTTTTTSCEEEE
T ss_pred             CCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCcccc--ccCC---CC---ceeeEE-eCCCCccCCEEEE
Confidence            88999999999999999998889999998  344666665322110  0001   00   125788 554    589999


Q ss_pred             EEC
Q 011333          216 IDR  218 (488)
Q Consensus       216 aD~  218 (488)
                      +-+
T Consensus        97 syt   99 (450)
T d1crua_          97 SGT   99 (450)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            753

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.45  E-value=0.24  Score=47.44  Aligned_cols=141  Identities=6%  Similarity=-0.067  Sum_probs=81.0

Q ss_pred             CceEEEEccCCc-EEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEc----CCCc-EE
Q 011333           84 EPYSVEVLPGGE-LLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVD----DRGN-IY  157 (488)
Q Consensus        84 ~P~GIaVd~dG~-LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD----~dG~-LY  157 (488)
                      .|++|+++|||. ||+++. .+.|++++.++........+ ..                ...|.+++++    +||+ ||
T Consensus        63 ~~~~vafSPDGk~l~~~~~-d~~v~vwd~~t~~~~~~~~i-~~----------------~~~~~~~~~s~~~spDG~~l~  124 (426)
T d1hzua2          63 AVHISRMSASGRYLLVIGR-DARIDMIDLWAKEPTKVAEI-KI----------------GIEARSVESSKFKGYEDRYTI  124 (426)
T ss_dssp             SEEEEEECTTSCEEEEEET-TSEEEEEETTSSSCEEEEEE-EC----------------CSEEEEEEECCSTTCTTTEEE
T ss_pred             CeeEEEECCCCCEEEEEeC-CCCEEEEEccCCceeEEEEE-eC----------------CCCCcceEEeeeecCCCCEEE
Confidence            699999999998 666664 56899999876321111111 11                2235666655    5786 78


Q ss_pred             EEECCCCEEEEEc--CCC-cEEEeCCccCCCCCCCCCCcccccC-CCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCc-
Q 011333          158 IADTMNMAIRKIS--DSG-VTTIAGGKWGRGGGHVDGPSEDAKF-SNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDD-  232 (488)
Q Consensus       158 VAD~~N~rIrkid--~gg-VttIaGg~~g~~~g~~dG~~~~a~f-~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g~~-  232 (488)
                      ++....+.|+.++  .+. +.++.+.....     ..  ..... ..+..++..+....+++++.+.+.|..+...... 
T Consensus       125 v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~-----~~--~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~  197 (426)
T d1hzua2         125 AGAYWPPQFAIMDGETLEPKQIVSTRGMTV-----DT--QTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDN  197 (426)
T ss_dssp             EEEEESSEEEEEETTTCCEEEEEECCEECS-----SS--CCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSS
T ss_pred             EeecCCCeEEEEcCCccceeEEeeccCCCc-----cc--eeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccc
Confidence            9888889999988  333 34443322111     00  00000 1234455455566788888888888888765422 


Q ss_pred             --eEEeccCCCcceEEEEe
Q 011333          233 --CAYQYGSSFPLGIAVLL  249 (488)
Q Consensus       233 --~~~~~~~g~P~GIav~~  249 (488)
                        .........|.+++++.
T Consensus       198 ~~~~~~~~~~~~~~~~~~~  216 (426)
T d1hzua2         198 LTVTSIGAAPFLADGGWDS  216 (426)
T ss_dssp             CEEEEEECCSSEEEEEECT
T ss_pred             eeeEEeccCCccEeeeECC
Confidence              11222233566666654

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=95.26  E-value=0.25  Score=44.67  Aligned_cols=112  Identities=14%  Similarity=0.069  Sum_probs=67.0

Q ss_pred             EccCCc-EEEEECC----CCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCc-EEEEECC-
Q 011333           90 VLPGGE-LLILDSA----NSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-IYIADTM-  162 (488)
Q Consensus        90 Vd~dG~-LYVaD~~----n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~-LYVAD~~-  162 (488)
                      ..|||. +||++..    .+.|+.+|..++.  .+.++-+.                  ...++++++||+ |||++.. 
T Consensus         9 ~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~--~~~~~~~g------------------~~~~~a~SpDg~~l~v~~~~~   68 (355)
T d2bbkh_           9 PAPDARRVYVNDPAHFAAVTQQFVIDGEAGR--VIGMIDGG------------------FLPNPVVADDGSFIAHASTVF   68 (355)
T ss_dssp             CCCCTTEEEEEECGGGCSSEEEEEEETTTTE--EEEEEEEC------------------SSCEEEECTTSSCEEEEEEEE
T ss_pred             eCCCCCEEEEEecccCCCcCeEEEEECCCCc--EEEEEECC------------------CCCceEEcCCCCEEEEEeCCC
Confidence            457776 8898753    3469999987532  12222111                  122699999996 9998642 


Q ss_pred             --------CCEEEEEc--CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCC-CeEEEEEcCC
Q 011333          163 --------NMAIRKIS--DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGN-RAIREIQLHF  230 (488)
Q Consensus       163 --------N~rIrkid--~gg-VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN-~rIrkI~~~g  230 (488)
                              .+.|+++|  .+. +.++......          .......|.++++.+....+||++... ..+..++...
T Consensus        69 ~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~----------~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~  138 (355)
T d2bbkh_          69 SRIARGERTDYVEVFDPVTLLPTADIELPDAP----------RFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEG  138 (355)
T ss_dssp             EETTEEEEEEEEEEECTTTCCEEEEEEETTCC----------CCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTT
T ss_pred             ccccccCCCCEEEEEECCCCCEEEEEecCCcc----------eeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCC
Confidence                    35788998  333 3344322110          011234688999666666789988643 4566666654


Q ss_pred             C
Q 011333          231 D  231 (488)
Q Consensus       231 ~  231 (488)
                      .
T Consensus       139 ~  139 (355)
T d2bbkh_         139 K  139 (355)
T ss_dssp             T
T ss_pred             C
Confidence            3

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=95.12  E-value=0.029  Score=56.66  Aligned_cols=67  Identities=19%  Similarity=0.221  Sum_probs=46.7

Q ss_pred             CCceEEEEc--cCCc-EEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCc-EEE
Q 011333           83 IEPYSVEVL--PGGE-LLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-IYI  158 (488)
Q Consensus        83 ~~P~GIaVd--~dG~-LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~-LYV  158 (488)
                      .+|.....+  +||. |||+|..++||.+|+..+..   ..-++.-+              ....|.|+++.++|+ +||
T Consensus        70 hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k---~~~ii~iP--------------~g~gphgi~~spdg~t~YV  132 (441)
T d1qnia2          70 HHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMK---TDKITHIP--------------NVQAIHGLRLQKVPKTNYV  132 (441)
T ss_dssp             CCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTE---EEEEEECT--------------TCCCEEEEEECCSSBCCEE
T ss_pred             cCCCcceecccCCCCEEEEEcCCCCEEEEEECCCCc---EeeEEecC--------------CCCCccceEEeccCCEEEE
Confidence            367666653  6886 99999999999999998632   22222111              024599999999996 789


Q ss_pred             EECCCCEE
Q 011333          159 ADTMNMAI  166 (488)
Q Consensus       159 AD~~N~rI  166 (488)
                      +....+.+
T Consensus       133 ~~~~~~~v  140 (441)
T d1qnia2         133 FCNAEFVI  140 (441)
T ss_dssp             EEEECSCE
T ss_pred             EeccCCcc
Confidence            87665555

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.92  E-value=0.11  Score=49.91  Aligned_cols=106  Identities=8%  Similarity=-0.072  Sum_probs=65.6

Q ss_pred             CCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCc-EEEEECCCCEEEEEc-
Q 011333           93 GGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-IYIADTMNMAIRKIS-  170 (488)
Q Consensus        93 dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~-LYVAD~~N~rIrkid-  170 (488)
                      .+.++|+...+++|..+|..+++  .+.++.+.                 ..|.+|++++||+ ||++.. .+.|++++ 
T Consensus        31 ~~~~~V~~~~dg~v~vwD~~t~~--~~~~l~~g-----------------~~~~~vafSPDGk~l~~~~~-d~~v~vwd~   90 (426)
T d1hzua2          31 PNLFSVTLRDAGQIALVDGDSKK--IVKVIDTG-----------------YAVHISRMSASGRYLLVIGR-DARIDMIDL   90 (426)
T ss_dssp             GGEEEEEETTTTEEEEEETTTCS--EEEEEECC-----------------SSEEEEEECTTSCEEEEEET-TSEEEEEET
T ss_pred             CeEEEEEEcCCCEEEEEECCCCc--EEEEEeCC-----------------CCeeEEEECCCCCEEEEEeC-CCCEEEEEc
Confidence            44477889999999999998632  23444221                 2489999999996 778875 46899988 


Q ss_pred             -CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEE---CCCC-eEEEEECCCCeEEEEEcCCCce
Q 011333          171 -DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYI---GSSC-SLLVIDRGNRAIREIQLHFDDC  233 (488)
Q Consensus       171 -~ggVttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~v---d~~G-~LYVaD~gN~rIrkI~~~g~~~  233 (488)
                       .+....++--..               ...|.++++.   .++| .||++....+.|+.++.....+
T Consensus        91 ~t~~~~~~~~i~~---------------~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~  143 (426)
T d1hzua2          91 WAKEPTKVAEIKI---------------GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEP  143 (426)
T ss_dssp             TSSSCEEEEEEEC---------------CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCE
T ss_pred             cCCceeEEEEEeC---------------CCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccce
Confidence             343322221000               1134444421   1234 5778877778888887765444

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=94.83  E-value=0.12  Score=48.39  Aligned_cols=73  Identities=7%  Similarity=-0.110  Sum_probs=49.0

Q ss_pred             EEEEccCCc-EEEEECC---------CCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCc-
Q 011333           87 SVEVLPGGE-LLILDSA---------NSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-  155 (488)
Q Consensus        87 GIaVd~dG~-LYVaD~~---------n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~-  155 (488)
                      ++++.+||. ||+++..         .+.|..+|..+.   ++...+..+.+.        .......|.+|++.+||. 
T Consensus        69 ~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~---~~~~~i~~p~~~--------~~~~g~~p~~~a~SpDGk~  137 (368)
T d1mdah_          69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTF---LPIADIELPDAP--------RFSVGPRVHIIGNCASSAC  137 (368)
T ss_dssp             EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTC---CEEEEEEETTSC--------SCCBSCCTTSEEECTTSSC
T ss_pred             cceECCCCCEEEEEcccCccccccccCCeEEEEECCCC---cEeeeecCCccc--------eecccCCccceEECCCCCE
Confidence            688999987 8887642         245999998753   222222111010        001134689999999995 


Q ss_pred             EEEEECCCCEEEEEc
Q 011333          156 IYIADTMNMAIRKIS  170 (488)
Q Consensus       156 LYVAD~~N~rIrkid  170 (488)
                      |||++...+.|+.++
T Consensus       138 l~va~~~~~~v~~~d  152 (368)
T d1mdah_         138 LLFFLFGSSAAAGLS  152 (368)
T ss_dssp             EEEEECSSSCEEEEE
T ss_pred             EEEEeCCCCeEEEEE
Confidence            999998888999998

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=94.67  E-value=0.081  Score=47.32  Aligned_cols=87  Identities=9%  Similarity=0.005  Sum_probs=57.4

Q ss_pred             eEEEcCCCcEEEEECCCCEEEEEc--CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCC-eEEEEECCCCe
Q 011333          147 GLTVDDRGNIYIADTMNMAIRKIS--DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSC-SLLVIDRGNRA  222 (488)
Q Consensus       147 GIAvD~dG~LYVAD~~N~rIrkid--~gg-VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G-~LYVaD~gN~r  222 (488)
                      |+|+.++|+.+++-...+.|..+|  .+. +.++... .+               ..|.+|++ .++| .|||++..+++
T Consensus         1 g~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~-~~---------------~~p~~l~~-spDG~~l~v~~~~~~~   63 (346)
T d1jmxb_           1 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMP-DK---------------FGPGTAMM-APDNRTAYVLNNHYGD   63 (346)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECS-SC---------------CSSCEEEE-CTTSSEEEEEETTTTE
T ss_pred             CccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcC-CC---------------CCcceEEE-CCCCCEEEEEECCCCc
Confidence            567888888777766678999999  333 3343311 00               15889994 5555 68999999999


Q ss_pred             EEEEEcCCCceEEe-ccC-------CCcceEEEEec
Q 011333          223 IREIQLHFDDCAYQ-YGS-------SFPLGIAVLLA  250 (488)
Q Consensus       223 IrkI~~~g~~~~~~-~~~-------g~P~GIav~~g  250 (488)
                      |..+++........ ...       ..|.++++...
T Consensus        64 v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~D   99 (346)
T d1jmxb_          64 IYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPD   99 (346)
T ss_dssp             EEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTT
T ss_pred             EEEEeCccCeeeeeecccccccccCCceEEEEEecC
Confidence            99999886544321 111       24677777643

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=94.46  E-value=0.25  Score=45.99  Aligned_cols=116  Identities=9%  Similarity=0.001  Sum_probs=70.6

Q ss_pred             CCc-eEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEEC
Q 011333           83 IEP-YSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADT  161 (488)
Q Consensus        83 ~~P-~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~  161 (488)
                      ..| +.+++++||.++++-..++.|+.++.+++....+..+-|.        .        ..-+.|+++++|+++++=.
T Consensus         7 ~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH--------~--------~~V~~l~fsp~~~~l~s~s   70 (371)
T d1k8kc_           7 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEH--------N--------GQVTGVDWAPDSNRIVTCG   70 (371)
T ss_dssp             SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECC--------S--------SCEEEEEEETTTTEEEEEE
T ss_pred             CCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCC--------C--------CCEEEEEECCCCCEEEEEE
Confidence            456 7889999999888777788999998765321222333221        1        1246789999998766544


Q ss_pred             CCCEEEEEc--CCCcE-EEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCC
Q 011333          162 MNMAIRKIS--DSGVT-TIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHF  230 (488)
Q Consensus       162 ~N~rIrkid--~ggVt-tIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g  230 (488)
                      ....|+..+  .+... ++.-..               .-....+++ ..++++.+++-..++.|+.++.+.
T Consensus        71 ~D~~i~vWd~~~~~~~~~~~~~~---------------~~~~v~~i~-~~p~~~~l~~~s~d~~i~i~~~~~  126 (371)
T d1k8kc_          71 TDRNAYVWTLKGRTWKPTLVILR---------------INRAARCVR-WAPNEKKFAVGSGSRVISICYFEQ  126 (371)
T ss_dssp             TTSCEEEEEEETTEEEEEEECCC---------------CSSCEEEEE-ECTTSSEEEEEETTSSEEEEEEET
T ss_pred             CCCeEEEEeeccccccccccccc---------------ccccccccc-cccccccceeecccCcceeeeeec
Confidence            466777777  33322 221110               011346777 466676666666677777666554

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=94.34  E-value=0.97  Score=41.00  Aligned_cols=49  Identities=12%  Similarity=0.089  Sum_probs=35.9

Q ss_pred             CCCeeEEECCCCe--EEEEECCCCeEEEEEcCCCce-EEeccC-CCcceEEEEe
Q 011333          200 NDFDVVYIGSSCS--LLVIDRGNRAIREIQLHFDDC-AYQYGS-SFPLGIAVLL  249 (488)
Q Consensus       200 ~P~gIa~vd~~G~--LYVaD~gN~rIrkI~~~g~~~-~~~~~~-g~P~GIav~~  249 (488)
                      .|.+++ +.++|+  ||++....+.|+.++...... ...... ..|..|++..
T Consensus       319 ~~~~~a-~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~P~~l~~~~  371 (373)
T d2madh_         319 DVDAIS-VAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQVLSVMN  371 (373)
T ss_pred             CeeEEE-ECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEECCCCCCCcEEEEec
Confidence            578898 566775  788999999999999885433 334333 4799998864

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=94.33  E-value=0.26  Score=43.56  Aligned_cols=108  Identities=6%  Similarity=0.046  Sum_probs=65.7

Q ss_pred             ceEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEECCCC
Q 011333           85 PYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNM  164 (488)
Q Consensus        85 P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~N~  164 (488)
                      ...|+++++|.++++-..++.|+.++....  ..+..+...              ........++++++|+++++=...+
T Consensus       229 i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~--~~~~~~~~~--------------~~~~~i~~~~~s~~~~~l~~g~~dg  292 (340)
T d1tbga_         229 INAICFFPNGNAFATGSDDATCRLFDLRAD--QELMTYSHD--------------NIICGITSVSFSKSGRLLLAGYDDF  292 (340)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTT--EEEEEECCT--------------TCCSCEEEEEECSSSCEEEEEETTS
T ss_pred             eEEEEECCCCCEEEEEeCCCeEEEEeeccc--ccccccccc--------------cccCceEEEEECCCCCEEEEEECCC
Confidence            467788888887776666777888877632  111222111              0012245789999998887766678


Q ss_pred             EEEEEc--CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEE
Q 011333          165 AIRKIS--DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREI  226 (488)
Q Consensus       165 rIrkid--~gg-VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI  226 (488)
                      .|+.++  .+. +.++.+-.                 ..-.+|+ +.+++.++++-...+.|+.+
T Consensus       293 ~i~iwd~~~~~~~~~~~~H~-----------------~~V~~l~-~s~d~~~l~s~s~Dg~v~iW  339 (340)
T d1tbga_         293 NCNVWDALKADRAGVLAGHD-----------------NRVSCLG-VTDDGMAVATGSWDSFLKIW  339 (340)
T ss_dssp             CEEEEETTTCCEEEEECCCS-----------------SCEEEEE-ECTTSSCEEEEETTSCEEEE
T ss_pred             EEEEEECCCCcEEEEEcCCC-----------------CCEEEEE-EeCCCCEEEEEccCCEEEEe
Confidence            899998  333 44443311                 1236777 56677766665556777665

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.10  E-value=0.38  Score=43.87  Aligned_cols=106  Identities=12%  Similarity=0.121  Sum_probs=61.1

Q ss_pred             ceEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEECCCC
Q 011333           85 PYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNM  164 (488)
Q Consensus        85 P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~N~  164 (488)
                      ...++++++++++++-..++.|+.++.+..   ......+.                -...+.|++.++|+++++=...+
T Consensus       227 i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~---~~~~~~~~----------------~~~i~~v~~s~~g~~l~s~s~Dg  287 (337)
T d1gxra_         227 IFSLGYCPTGEWLAVGMESSNVEVLHVNKP---DKYQLHLH----------------ESCVLSLKFAYCGKWFVSTGKDN  287 (337)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTSS---CEEEECCC----------------SSCEEEEEECTTSSEEEEEETTS
T ss_pred             eEEEEEcccccccceecccccccccccccc---cccccccc----------------ccccceEEECCCCCEEEEEeCCC
Confidence            345556666655554444556666665431   11111111                12346789999998887766678


Q ss_pred             EEEEEc--CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEc
Q 011333          165 AIRKIS--DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQL  228 (488)
Q Consensus       165 rIrkid--~gg-VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~  228 (488)
                      .|+.++  .+. +.++...                  ....+++ +.++++++++-..++.|+.+++
T Consensus       288 ~i~iwd~~~~~~~~~~~~~------------------~~v~~~~-~s~d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         288 LLNAWRTPYGASIFQSKES------------------SSVLSCD-ISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             EEEEEETTTCCEEEEEECS------------------SCEEEEE-ECTTSCEEEEEETTSCEEEEEE
T ss_pred             eEEEEECCCCCEEEEccCC------------------CCEEEEE-EeCCCCEEEEEeCCCeEEEEEE
Confidence            899998  333 3332211                  1345677 5667777776666777877764

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=93.95  E-value=1.1  Score=39.70  Aligned_cols=68  Identities=10%  Similarity=0.058  Sum_probs=46.9

Q ss_pred             CceEEEEccCCc-EEEE-ECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEEC
Q 011333           84 EPYSVEVLPGGE-LLIL-DSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADT  161 (488)
Q Consensus        84 ~P~GIaVd~dG~-LYVa-D~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~  161 (488)
                      ....++++|||. |+++ +.....|+.++..+   +.+..+.+.                -.....++++++|+.+++-.
T Consensus        44 ~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~---~~~~~~~~~----------------~~~v~~~~~spdg~~l~~~~  104 (360)
T d1k32a3          44 RIRYVRRGGDTKVAFIHGTREGDFLGIYDYRT---GKAEKFEEN----------------LGNVFAMGVDRNGKFAVVAN  104 (360)
T ss_dssp             CEEEEEECSSSEEEEEEEETTEEEEEEEETTT---CCEEECCCC----------------CCSEEEEEECTTSSEEEEEE
T ss_pred             CEEEEEECCCCCEEEEEEcCCCCEEEEEECCC---CcEEEeeCC----------------CceEEeeeecccccccceec
Confidence            457889999997 4443 44445788888876   334443322                22356899999998777777


Q ss_pred             CCCEEEEEc
Q 011333          162 MNMAIRKIS  170 (488)
Q Consensus       162 ~N~rIrkid  170 (488)
                      ..+.|+.++
T Consensus       105 ~~~~~~~~~  113 (360)
T d1k32a3         105 DRFEIMTVD  113 (360)
T ss_dssp             TTSEEEEEE
T ss_pred             ccccccccc
Confidence            788888888

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=93.87  E-value=0.23  Score=48.37  Aligned_cols=103  Identities=8%  Similarity=-0.060  Sum_probs=67.3

Q ss_pred             CCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCc-EEEEECCCCEEEEEc-
Q 011333           93 GGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-IYIADTMNMAIRKIS-  170 (488)
Q Consensus        93 dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~-LYVAD~~N~rIrkid-  170 (488)
                      ++.++|+....+.|..+|..+..  .+..+...                 ..|.+|++.+||+ ||++.. .+.|++++ 
T Consensus        31 ~~~~~v~~~d~g~v~v~D~~t~~--v~~~~~~g-----------------~~~~~v~fSpDG~~l~~~s~-dg~v~~~d~   90 (432)
T d1qksa2          31 ENLFSVTLRDAGQIALIDGSTYE--IKTVLDTG-----------------YAVHISRLSASGRYLFVIGR-DGKVNMIDL   90 (432)
T ss_dssp             GGEEEEEETTTTEEEEEETTTCC--EEEEEECS-----------------SCEEEEEECTTSCEEEEEET-TSEEEEEET
T ss_pred             CcEEEEEEcCCCEEEEEECCCCc--EEEEEeCC-----------------CCeeEEEECCCCCEEEEEcC-CCCEEEEEe
Confidence            33457888899999999988632  22333211                 1489999999996 888875 46888888 


Q ss_pred             -CCCc---EEEeCCccCCCCCCCCCCcccccCCCCCeeEEE---CCCC-eEEEEECCCCeEEEEEcCCCce
Q 011333          171 -DSGV---TTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYI---GSSC-SLLVIDRGNRAIREIQLHFDDC  233 (488)
Q Consensus       171 -~ggV---ttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~v---d~~G-~LYVaD~gN~rIrkI~~~g~~~  233 (488)
                       .+..   ..+..+                  ..|.++++.   .++| .|||+....+.|+.++.....+
T Consensus        91 ~t~~~~~~~~i~~~------------------~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~  143 (432)
T d1qksa2          91 WMKEPTTVAEIKIG------------------SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEP  143 (432)
T ss_dssp             TSSSCCEEEEEECC------------------SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCE
T ss_pred             eCCCceEEEEEecC------------------CCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccc
Confidence             3332   223221                  234555532   2355 5789998889999999876544

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=93.17  E-value=0.43  Score=44.24  Aligned_cols=79  Identities=13%  Similarity=-0.079  Sum_probs=50.9

Q ss_pred             eEEEcCCCc-EEEEECC---------CCEEEEEcC--CCc-EEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeE
Q 011333          147 GLTVDDRGN-IYIADTM---------NMAIRKISD--SGV-TTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSL  213 (488)
Q Consensus       147 GIAvD~dG~-LYVAD~~---------N~rIrkid~--ggV-ttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~L  213 (488)
                      ++++.+||. ||++...         ...|+.+|.  +.+ ..+.. ....         .......|.++++.++...|
T Consensus        69 ~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~-p~~~---------~~~~g~~p~~~a~SpDGk~l  138 (368)
T d1mdah_          69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIEL-PDAP---------RFSVGPRVHIIGNCASSACL  138 (368)
T ss_dssp             EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEE-TTSC---------SCCBSCCTTSEEECTTSSCE
T ss_pred             cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecC-Cccc---------eecccCCccceEECCCCCEE
Confidence            689999995 8988742         245999993  332 23321 1110         00113468899965555579


Q ss_pred             EEEECCCCeEEEEEcCCCceEE
Q 011333          214 LVIDRGNRAIREIQLHFDDCAY  235 (488)
Q Consensus       214 YVaD~gN~rIrkI~~~g~~~~~  235 (488)
                      ||++...+.|+.+++.......
T Consensus       139 ~va~~~~~~v~~~d~~~~~~~~  160 (368)
T d1mdah_         139 LFFLFGSSAAAGLSVPGASDDQ  160 (368)
T ss_dssp             EEEECSSSCEEEEEETTTEEEE
T ss_pred             EEEeCCCCeEEEEECCCCcEeE
Confidence            9999888999999988755443

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=93.02  E-value=0.76  Score=45.79  Aligned_cols=67  Identities=16%  Similarity=0.121  Sum_probs=44.7

Q ss_pred             cCCcceEEEc--CCCc-EEEEECCCCEEEEEc--CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEE
Q 011333          142 MNHPKGLTVD--DRGN-IYIADTMNMAIRKIS--DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVI  216 (488)
Q Consensus       142 Ln~P~GIAvD--~dG~-LYVAD~~N~rIrkid--~ggVttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVa  216 (488)
                      ..+|....++  +||. |||+|..|+||.+||  ...+..+...+.               ...|+++++......+||+
T Consensus        69 ~hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~---------------g~gphgi~~spdg~t~YV~  133 (441)
T d1qnia2          69 CHHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPN---------------VQAIHGLRLQKVPKTNYVF  133 (441)
T ss_dssp             BCCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTT---------------CCCEEEEEECCSSBCCEEE
T ss_pred             ccCCCcceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCC---------------CCCccceEEeccCCEEEEE
Confidence            4578776665  5784 999999999999999  333433332221               2368999954344457898


Q ss_pred             ECCCCeE
Q 011333          217 DRGNRAI  223 (488)
Q Consensus       217 D~gN~rI  223 (488)
                      ....+.+
T Consensus       134 ~~~~~~v  140 (441)
T d1qnia2         134 CNAEFVI  140 (441)
T ss_dssp             EEECSCE
T ss_pred             eccCCcc
Confidence            7665555

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=92.92  E-value=0.85  Score=40.89  Aligned_cols=122  Identities=7%  Similarity=-0.088  Sum_probs=68.8

Q ss_pred             EEEEccCCc-EEEEECC---------CCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCc-
Q 011333           87 SVEVLPGGE-LLILDSA---------NSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-  155 (488)
Q Consensus        87 GIaVd~dG~-LYVaD~~---------n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~-  155 (488)
                      +++++|||. |||++..         .+.|+++|..+..  .+..+.... .       . .......|.+++++++|. 
T Consensus        51 ~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~--~~~~~~~~~-~-------~-~~~~~~~~~~~~~s~dg~~  119 (355)
T d2bbkh_          51 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLL--PTADIELPD-A-------P-RFLVGTYPWMTSLTPDGKT  119 (355)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCC--EEEEEEETT-C-------C-CCCBSCCGGGEEECTTSSE
T ss_pred             ceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCC--EEEEEecCC-c-------c-eeecCCCCceEEEecCCCe
Confidence            689999998 8887642         3579999987632  122222110 0       0 011245789999999986 


Q ss_pred             EEEEECC-CCEEEEEc--CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcC
Q 011333          156 IYIADTM-NMAIRKIS--DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLH  229 (488)
Q Consensus       156 LYVAD~~-N~rIrkid--~gg-VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~  229 (488)
                      +|+++.. ...+..++  .+. +.++......          .......+..+++..+...+++.......+..++..
T Consensus       120 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~  187 (355)
T d2bbkh_         120 LLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCY----------HIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTE  187 (355)
T ss_dssp             EEEEECSSSCEEEEEETTTTEEEEEEECCSEE----------EEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECC
T ss_pred             eEEecCCCCceeeeeecCCCcEeeEEecCCcc----------eEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecc
Confidence            8888865 35666666  333 3444321100          000112334456455555667776666766666654

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=92.55  E-value=0.63  Score=40.86  Aligned_cols=74  Identities=8%  Similarity=0.066  Sum_probs=44.6

Q ss_pred             cceEEEcCCCcEEEEECCCCEEEEEc-CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeE
Q 011333          145 PKGLTVDDRGNIYIADTMNMAIRKIS-DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAI  223 (488)
Q Consensus       145 P~GIAvD~dG~LYVAD~~N~rIrkid-~ggVttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rI  223 (488)
                      .+.|+++++|..+++-..++.|+.++ ..+.....-...            ...-....+++ ..+++.++++-...+.|
T Consensus       182 i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~------------~~h~~~v~~l~-~s~~~~~l~sgs~dg~i  248 (299)
T d1nr0a2         182 ITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSW------------TFHTAKVACVS-WSPDNVRLATGSLDNSV  248 (299)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCC------------CCCSSCEEEEE-ECTTSSEEEEEETTSCE
T ss_pred             ccccccccccccccccccccccccccccccccccccccc------------ccccccccccc-ccccccceEEEcCCCEE
Confidence            56789999998766655677888887 322111100000            00011235677 56677777766667889


Q ss_pred             EEEEcCCC
Q 011333          224 REIQLHFD  231 (488)
Q Consensus       224 rkI~~~g~  231 (488)
                      +.+++...
T Consensus       249 ~iwd~~~~  256 (299)
T d1nr0a2         249 IVWNMNKP  256 (299)
T ss_dssp             EEEETTCT
T ss_pred             EEEECCCC
Confidence            99987753

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=92.34  E-value=1.4  Score=39.07  Aligned_cols=106  Identities=12%  Similarity=0.121  Sum_probs=64.3

Q ss_pred             Ecc-CCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCc-EEE-EECCCCEE
Q 011333           90 VLP-GGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGN-IYI-ADTMNMAI  166 (488)
Q Consensus        90 Vd~-dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~-LYV-AD~~N~rI  166 (488)
                      ++| ||+++++.. .++|+.++.++   +.+..+ +.                -.....+++.+||+ |++ ++...+.|
T Consensus        10 fSP~dG~~~a~~~-~g~v~v~d~~~---~~~~~~-~~----------------~~~v~~~~~spDg~~l~~~~~~~g~~v   68 (360)
T d1k32a3          10 FSPLDGDLIAFVS-RGQAFIQDVSG---TYVLKV-PE----------------PLRIRYVRRGGDTKVAFIHGTREGDFL   68 (360)
T ss_dssp             EEECGGGCEEEEE-TTEEEEECTTS---SBEEEC-SC----------------CSCEEEEEECSSSEEEEEEEETTEEEE
T ss_pred             ccCCCCCEEEEEE-CCeEEEEECCC---CcEEEc-cC----------------CCCEEEEEECCCCCEEEEEEcCCCCEE
Confidence            456 777666553 35788887765   333332 21                12356799999996 433 45444567


Q ss_pred             EEEc-CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCceE
Q 011333          167 RKIS-DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCA  234 (488)
Q Consensus       167 rkid-~gg-VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g~~~~  234 (488)
                      +.++ .++ +..+.+.                 -....+++ +.++|+.+++-...+.|+.++..+..+.
T Consensus        69 ~v~d~~~~~~~~~~~~-----------------~~~v~~~~-~spdg~~l~~~~~~~~~~~~~~~~~~~~  120 (360)
T d1k32a3          69 GIYDYRTGKAEKFEEN-----------------LGNVFAMG-VDRNGKFAVVANDRFEIMTVDLETGKPT  120 (360)
T ss_dssp             EEEETTTCCEEECCCC-----------------CCSEEEEE-ECTTSSEEEEEETTSEEEEEETTTCCEE
T ss_pred             EEEECCCCcEEEeeCC-----------------CceEEeee-ecccccccceecccccccccccccccee
Confidence            7887 333 4443322                 11346777 5677777777777788888888765543

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.23  E-value=1.9  Score=39.99  Aligned_cols=132  Identities=11%  Similarity=0.001  Sum_probs=73.7

Q ss_pred             ceEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEECCC-
Q 011333           85 PYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMN-  163 (488)
Q Consensus        85 P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~N-  163 (488)
                      ...+++.++|. +++-..++.|+.++...+.  .+..+-.. ....|+         -..-+.|++.++|++.++=... 
T Consensus       187 ~~~v~~s~dg~-lasgs~Dg~i~iwd~~~~~--~~~~~~~~-~~l~~h---------~~~V~~l~~spdg~~l~sgs~D~  253 (393)
T d1sq9a_         187 ATSVDISERGL-IATGFNNGTVQISELSTLR--PLYNFESQ-HSMINN---------SNSIRSVKFSPQGSLLAIAHDSN  253 (393)
T ss_dssp             CCEEEECTTSE-EEEECTTSEEEEEETTTTE--EEEEEECC-C---CC---------CCCEEEEEECSSTTEEEEEEEET
T ss_pred             EEEEEECCCCE-EEEEeCCCcEEEEeecccc--cccccccc-cccccc---------cceEEEcccccccceeeeecCCC
Confidence            56788888884 4555667899999987521  22222211 111122         1234679999999877764322 


Q ss_pred             --CEEEEEc--CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCceE
Q 011333          164 --MAIRKIS--DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCA  234 (488)
Q Consensus       164 --~rIrkid--~gg-VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g~~~~  234 (488)
                        ..|+.++  .+. +.++.......    .........-..-++|+ +.++++++++-...+.|+.++.....+.
T Consensus       254 t~~~i~lwd~~~g~~~~~l~~~~~~~----~~~~~~~gH~~~V~~l~-fspd~~~l~S~s~D~~v~vWd~~~g~~~  324 (393)
T d1sq9a_         254 SFGCITLYETEFGERIGSLSVPTHSS----QASLGEFAHSSWVMSLS-FNDSGETLCSAGWDGKLRFWDVKTKERI  324 (393)
T ss_dssp             TEEEEEEEETTTCCEEEEECBC------------CCBSBSSCEEEEE-ECSSSSEEEEEETTSEEEEEETTTTEEE
T ss_pred             Ccceeeecccccceeeeeeccccccc----cceeeeecccCceeeec-cCCCCCeeEEECCCCEEEEEECCCCCEE
Confidence              3577777  333 44443211100    00000011122346788 5778888888888899999998765443

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=91.56  E-value=1.6  Score=40.13  Aligned_cols=115  Identities=10%  Similarity=-0.069  Sum_probs=66.5

Q ss_pred             eEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEECCCCE
Q 011333           86 YSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNMA  165 (488)
Q Consensus        86 ~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~N~r  165 (488)
                      ..|+++|+|+++++-...+.|+.++....   ......-.    .++         -.....|+++++|+.+++-..++.
T Consensus        55 ~~l~fsp~~~~l~s~s~D~~i~vWd~~~~---~~~~~~~~----~~~---------~~~v~~i~~~p~~~~l~~~s~d~~  118 (371)
T d1k8kc_          55 TGVDWAPDSNRIVTCGTDRNAYVWTLKGR---TWKPTLVI----LRI---------NRAARCVRWAPNEKKFAVGSGSRV  118 (371)
T ss_dssp             EEEEEETTTTEEEEEETTSCEEEEEEETT---EEEEEEEC----CCC---------SSCEEEEEECTTSSEEEEEETTSS
T ss_pred             EEEEECCCCCEEEEEECCCeEEEEeeccc---cccccccc----ccc---------cccccccccccccccceeecccCc
Confidence            67888999997776555678888887642   21111110    011         123568999999986666556666


Q ss_pred             EEEEc--CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCC
Q 011333          166 IRKIS--DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHF  230 (488)
Q Consensus       166 Irkid--~gg-VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g  230 (488)
                      |+.++  ... ..........             .-....+++ ..+++.++++-...+.|+.++...
T Consensus       119 i~i~~~~~~~~~~~~~~~~~~-------------~~~~v~~v~-~~p~~~~l~s~s~D~~v~v~~~~~  172 (371)
T d1k8kc_         119 ISICYFEQENDWWVCKHIKKP-------------IRSTVLSLD-WHPNSVLLAAGSCDFKCRIFSAYI  172 (371)
T ss_dssp             EEEEEEETTTTEEEEEEECTT-------------CCSCEEEEE-ECTTSSEEEEEETTSCEEEEECCC
T ss_pred             ceeeeeecccccccccccccc-------------ccccccccc-ccccccceeccccCcEEEEEeecc
Confidence            66554  333 2221111000             001235677 467777777766778888888654

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.65  E-value=3.2  Score=37.22  Aligned_cols=71  Identities=6%  Similarity=-0.020  Sum_probs=43.1

Q ss_pred             cceEEEcCCCcEEEEECCCCEEEEEc-C-CCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCe
Q 011333          145 PKGLTVDDRGNIYIADTMNMAIRKIS-D-SGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRA  222 (488)
Q Consensus       145 P~GIAvD~dG~LYVAD~~N~rIrkid-~-ggVttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~r  222 (488)
                      ...|+++++++++++=..++.|+.++ . +........                 -....+|+ +.++++++++-...+.
T Consensus       227 i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-----------------~~~i~~v~-~s~~g~~l~s~s~Dg~  288 (337)
T d1gxra_         227 IFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLH-----------------ESCVLSLK-FAYCGKWFVSTGKDNL  288 (337)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECCC-----------------SSCEEEEE-ECTTSSEEEEEETTSE
T ss_pred             eEEEEEcccccccceecccccccccccccccccccccc-----------------ccccceEE-ECCCCCEEEEEeCCCe
Confidence            45788888888666555567788887 3 223222211                 01235666 4666776666666678


Q ss_pred             EEEEEcCCCce
Q 011333          223 IREIQLHFDDC  233 (488)
Q Consensus       223 IrkI~~~g~~~  233 (488)
                      |+.++.....+
T Consensus       289 i~iwd~~~~~~  299 (337)
T d1gxra_         289 LNAWRTPYGAS  299 (337)
T ss_dssp             EEEEETTTCCE
T ss_pred             EEEEECCCCCE
Confidence            88887765443

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=90.48  E-value=4  Score=36.68  Aligned_cols=122  Identities=12%  Similarity=0.118  Sum_probs=69.1

Q ss_pred             ceEEEEccCCc-EEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEECCC
Q 011333           85 PYSVEVLPGGE-LLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMN  163 (488)
Q Consensus        85 P~GIaVd~dG~-LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~N  163 (488)
                      ...|+++++|. ++++-...+.|+.++...   +........      +         -..-+.|+++++|+++++=...
T Consensus       149 v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~---~~~~~~~~~------~---------~~~i~~v~~~p~~~~l~~~~~d  210 (311)
T d1nr0a1         149 MNSVDFKPSRPFRIISGSDDNTVAIFEGPP---FKFKSTFGE------H---------TKFVHSVRYNPDGSLFASTGGD  210 (311)
T ss_dssp             EEEEEECSSSSCEEEEEETTSCEEEEETTT---BEEEEEECC------C---------SSCEEEEEECTTSSEEEEEETT
T ss_pred             cccccccccceeeecccccccccccccccc---ccccccccc------c---------cccccccccCcccccccccccc
Confidence            46788888877 466555567888888764   222222211      0         1224689999999877765556


Q ss_pred             CEEEEEc--CCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCceE
Q 011333          164 MAIRKIS--DSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDCA  234 (488)
Q Consensus       164 ~rIrkid--~ggVttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g~~~~  234 (488)
                      +.|+.++  ++..............++         -..-.+|+ +.++++++++-...+.|+.++.....+.
T Consensus       211 ~~v~~~d~~~~~~~~~~~~~~~~~~~h---------~~~V~~~~-~s~~~~~l~tgs~Dg~v~iwd~~t~~~~  273 (311)
T d1nr0a1         211 GTIVLYNGVDGTKTGVFEDDSLKNVAH---------SGSVFGLT-WSPDGTKIASASADKTIKIWNVATLKVE  273 (311)
T ss_dssp             SCEEEEETTTCCEEEECBCTTSSSCSS---------SSCEEEEE-ECTTSSEEEEEETTSEEEEEETTTTEEE
T ss_pred             ccccccccccccccccccccccccccc---------cccccccc-cCCCCCEEEEEeCCCeEEEEECCCCcEE
Confidence            7788887  333222221111100011         11235677 4566666666556677888887655443

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=89.63  E-value=2.8  Score=36.41  Aligned_cols=112  Identities=17%  Similarity=0.204  Sum_probs=65.8

Q ss_pred             eEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEECCCCE
Q 011333           86 YSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNMA  165 (488)
Q Consensus        86 ~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~N~r  165 (488)
                      ..+++.++|.++++.. .+.|+.++..+........+               ....-..+.++++.++|++.++.. ...
T Consensus        59 ~~v~~~~~g~~~~~~~-d~~v~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~s~~g~~~~~~~-~~~  121 (299)
T d1nr0a2          59 TGIKTTSKGDLFTVSW-DDHLKVVPAGGSGVDSSKAV---------------ANKLSSQPLGLAVSADGDIAVAAC-YKH  121 (299)
T ss_dssp             EEEEECTTSCEEEEET-TTEEEEECSSSSSSCTTSCC---------------EEECSSCEEEEEECTTSSCEEEEE-SSE
T ss_pred             EEEEeeccceeecccc-eeeEEEeccCCccccccccc---------------cccccccccccccccccccccccc-ccc
Confidence            6788889999888765 46788887653211000000               001123577899999998777654 356


Q ss_pred             EEEEcCCCcEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCce
Q 011333          166 IRKISDSGVTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDC  233 (488)
Q Consensus       166 Irkid~ggVttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g~~~  233 (488)
                      |+.++.+....+...                  .....++ +.+++.++++-..++.|+.+++.+...
T Consensus       122 i~~~~~~~~~~~~~~------------------~~~~~~~-~s~~~~~l~~g~~dg~i~~~d~~~~~~  170 (299)
T d1nr0a2         122 IAIYSHGKLTEVPIS------------------YNSSCVA-LSNDKQFVAVGGQDSKVHVYKLSGASV  170 (299)
T ss_dssp             EEEEETTEEEEEECS------------------SCEEEEE-ECTTSCEEEEEETTSEEEEEEEETTEE
T ss_pred             ccccccccccccccc------------------ccccccc-ccccccccccccccccccccccccccc
Confidence            777775554433221                  0234455 455666665555667777777765433

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=89.45  E-value=5.1  Score=34.56  Aligned_cols=110  Identities=11%  Similarity=0.083  Sum_probs=62.6

Q ss_pred             EccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEECCCCEEEEE
Q 011333           90 VLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNMAIRKI  169 (488)
Q Consensus        90 Vd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~N~rIrki  169 (488)
                      ..+.+.++++-...+.|+.++.....  .+.++.+.                -...+.|+++++|+++++=...+.|+.+
T Consensus       192 ~~~~~~~~~~~~~d~~v~i~d~~~~~--~~~~~~~h----------------~~~i~~v~~~p~~~~l~s~s~d~~i~~~  253 (340)
T d1tbga_         192 LAPDTRLFVSGACDASAKLWDVREGM--CRQTFTGH----------------ESDINAICFFPNGNAFATGSDDATCRLF  253 (340)
T ss_dssp             ECTTSSEEEEEETTTEEEEEETTTTE--EEEEECCC----------------SSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             cccccceeEEeecCceEEEEECCCCc--EEEEEeCC----------------CCCeEEEEECCCCCEEEEEeCCCeEEEE
Confidence            33455566665556667666655311  11222111                1224678999999877766667888888


Q ss_pred             cC-C-C-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcCCCce
Q 011333          170 SD-S-G-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDDC  233 (488)
Q Consensus       170 d~-g-g-VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g~~~  233 (488)
                      +- . . +.++....               .......++ +.+++.++++-..++.|+.++.....+
T Consensus       254 ~~~~~~~~~~~~~~~---------------~~~~i~~~~-~s~~~~~l~~g~~dg~i~iwd~~~~~~  304 (340)
T d1tbga_         254 DLRADQELMTYSHDN---------------IICGITSVS-FSKSGRLLLAGYDDFNCNVWDALKADR  304 (340)
T ss_dssp             ETTTTEEEEEECCTT---------------CCSCEEEEE-ECSSSCEEEEEETTSCEEEEETTTCCE
T ss_pred             eeccccccccccccc---------------ccCceEEEE-ECCCCCEEEEEECCCEEEEEECCCCcE
Confidence            82 2 2 22222110               011235566 567777777777778888888765433

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=87.94  E-value=3.8  Score=36.87  Aligned_cols=116  Identities=16%  Similarity=0.144  Sum_probs=61.4

Q ss_pred             eEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEECCCCE
Q 011333           86 YSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNMA  165 (488)
Q Consensus        86 ~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~N~r  165 (488)
                      ..++++++|+++++-...+.|+.++...+.  .+..+-....-..|+         -..-..|+++++|+.+++=...+.
T Consensus       193 ~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~--~~~~~~~~~~~~~~h---------~~~V~~~~~s~~~~~l~tgs~Dg~  261 (311)
T d1nr0a1         193 HSVRYNPDGSLFASTGGDGTIVLYNGVDGT--KTGVFEDDSLKNVAH---------SGSVFGLTWSPDGTKIASASADKT  261 (311)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTTCC--EEEECBCTTSSSCSS---------SSCEEEEEECTTSSEEEEEETTSE
T ss_pred             cccccCcccccccccccccccccccccccc--ccccccccccccccc---------cccccccccCCCCCEEEEEeCCCe
Confidence            577777887766665556677777765321  111111110011111         112357899999987777555678


Q ss_pred             EEEEc--CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEEEcC
Q 011333          166 IRKIS--DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREIQLH  229 (488)
Q Consensus       166 Irkid--~gg-VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~  229 (488)
                      |+.++  ++. +.++-.....              .....++.  .....|+.+. .++.|+.++++
T Consensus       262 v~iwd~~t~~~~~~l~~~~~~--------------~~~~~~~~--~~~~~l~s~s-~dG~i~~wd~d  311 (311)
T d1nr0a1         262 IKIWNVATLKVEKTIPVGTRI--------------EDQQLGII--WTKQALVSIS-ANGFINFVNPE  311 (311)
T ss_dssp             EEEEETTTTEEEEEEECCSSG--------------GGCEEEEE--ECSSCEEEEE-TTCCEEEEETT
T ss_pred             EEEEECCCCcEEEEEECCCCc--------------cceEEEEE--ecCCEEEEEE-CCCEEEEEeCC
Confidence            99988  344 3444332110              01112333  2333455554 57888888763

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=87.81  E-value=6.9  Score=37.35  Aligned_cols=64  Identities=20%  Similarity=0.135  Sum_probs=46.9

Q ss_pred             CCCeeEEECCCCeEEEEECCCCeEEEEEcCCCc----eEE--e---ccCCCcceEEEEecCCceEEEEEEEEec
Q 011333          200 NDFDVVYIGSSCSLLVIDRGNRAIREIQLHFDD----CAY--Q---YGSSFPLGIAVLLAAGFFGYMLALLQRR  264 (488)
Q Consensus       200 ~P~gIa~vd~~G~LYVaD~gN~rIrkI~~~g~~----~~~--~---~~~g~P~GIav~~g~g~~Gy~~a~l~~~  264 (488)
                      .+-|+++.+..+.|||++- +..||++..+.+.    ...  .   ...+-|.||++.-....-||++++-|..
T Consensus       181 q~EGCVvDde~~~LyisEE-~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~  253 (353)
T d1h6la_         181 QTEGMAADDEYGSLYIAEE-DEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGN  253 (353)
T ss_dssp             CEEEEEEETTTTEEEEEET-TTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGG
T ss_pred             ccceEEEeCCCCcEEEecC-ccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCC
Confidence            4567776777899999987 5789999876421    111  1   1234689999998777889999998865

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.93  E-value=3.1  Score=35.18  Aligned_cols=98  Identities=11%  Similarity=0.160  Sum_probs=57.2

Q ss_pred             CCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEECCCCEEEEEc--
Q 011333           93 GGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNMAIRKIS--  170 (488)
Q Consensus        93 dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~N~rIrkid--  170 (488)
                      ++.++++-...+.|+.++...+.  .+..+.+.                -+.-..+++.++|+++++=...+.|+.++  
T Consensus       216 ~~~~~~~~~~d~~i~~~~~~~~~--~~~~~~~~----------------~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~  277 (317)
T d1vyhc1         216 PGPFLLSGSRDKTIKMWDVSTGM--CLMTLVGH----------------DNWVRGVLFHSGGKFILSCADDKTLRVWDYK  277 (317)
T ss_dssp             -CCEEEEEETTSEEEEEETTTTE--EEEEEECC----------------SSCEEEEEECSSSSCEEEEETTTEEEEECCT
T ss_pred             CCceeEeccCCCEEEEEECCCCc--EEEEEeCC----------------CCCEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence            34455555556677777766421  22333222                12246789999998777655678899998  


Q ss_pred             CCC-cEEEeCCccCCCCCCCCCCcccccCCCCCeeEEECCCCeEEEEECCCCeEEEE
Q 011333          171 DSG-VTTIAGGKWGRGGGHVDGPSEDAKFSNDFDVVYIGSSCSLLVIDRGNRAIREI  226 (488)
Q Consensus       171 ~gg-VttIaGg~~g~~~g~~dG~~~~a~f~~P~gIa~vd~~G~LYVaD~gN~rIrkI  226 (488)
                      ++. +.++.+..                 ..-++|+ +.+++.++++-...+.|+.+
T Consensus       278 ~~~~~~~~~~h~-----------------~~V~~~~-~s~~~~~l~s~s~Dg~i~iW  316 (317)
T d1vyhc1         278 NKRCMKTLNAHE-----------------HFVTSLD-FHKTAPYVVTGSVDQTVKVW  316 (317)
T ss_dssp             TSCCCEEEECCS-----------------SCEEEEE-ECSSSSCEEEEETTSEEEEE
T ss_pred             CCcEEEEEcCCC-----------------CCEEEEE-EcCCCCEEEEEeCCCeEEEe
Confidence            344 55554321                 1235677 46666666665556677654

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.31  E-value=13  Score=32.84  Aligned_cols=83  Identities=11%  Similarity=0.044  Sum_probs=45.6

Q ss_pred             ceEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCcccc--CCCcccccccCCcceEEEcCCCcEEEEECC
Q 011333           85 PYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGH--VDGKPREARMNHPKGLTVDDRGNIYIADTM  162 (488)
Q Consensus        85 P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~--~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~  162 (488)
                      -..|++++||.++++-. ++.|+.++...+.  .+..+.+........  .........-..-+.|++.++|+++++=..
T Consensus        65 V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~  141 (388)
T d1erja_          65 VCCVKFSNDGEYLATGC-NKTTQVYRVSDGS--LVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAE  141 (388)
T ss_dssp             CCEEEECTTSSEEEEEC-BSCEEEEETTTCC--EEEEECC-----------------CCCCBEEEEEECTTSSEEEEEET
T ss_pred             EEEEEECCCCCEEEEEe-CCeEEEEEecccc--eEeeecccccccccccccccccccCCCCCEEEEEECCCCCcceeccc
Confidence            35789999999877754 6789999876421  222332211000000  000000000112347899999987777666


Q ss_pred             CCEEEEEc
Q 011333          163 NMAIRKIS  170 (488)
Q Consensus       163 N~rIrkid  170 (488)
                      .+.|+.++
T Consensus       142 dg~v~i~~  149 (388)
T d1erja_         142 DRLIRIWD  149 (388)
T ss_dssp             TSCEEEEE
T ss_pred             cccccccc
Confidence            78888888

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.79  E-value=9.4  Score=33.95  Aligned_cols=68  Identities=15%  Similarity=0.134  Sum_probs=40.4

Q ss_pred             ceEEEEccC-CcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEc---CCCcEEEEE
Q 011333           85 PYSVEVLPG-GELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVD---DRGNIYIAD  160 (488)
Q Consensus        85 P~GIaVd~d-G~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD---~dG~LYVAD  160 (488)
                      ...++++|+ +.++++-...+.|+.++.....  .+.++.+..    .            ...++.+.   ++|.++++=
T Consensus       208 v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~--~~~~l~~~~----~------------~v~~~~~s~~~~dg~~l~s~  269 (325)
T d1pgua1         208 VRDVEFSPDSGEFVITVGSDRKISCFDGKSGE--FLKYIEDDQ----E------------PVQGGIFALSWLDSQKFATV  269 (325)
T ss_dssp             EEEEEECSTTCCEEEEEETTCCEEEEETTTCC--EEEECCBTT----B------------CCCSCEEEEEESSSSEEEEE
T ss_pred             cEEeeeccccceeccccccccceeeeeecccc--ccccccccc----c------------ccccceeeeeccCCCEEEEE
Confidence            467888885 5677776667889999876421  223332210    0            01122222   577777766


Q ss_pred             CCCCEEEEEc
Q 011333          161 TMNMAIRKIS  170 (488)
Q Consensus       161 ~~N~rIrkid  170 (488)
                      ...+.|+.++
T Consensus       270 s~D~~i~iwd  279 (325)
T d1pgua1         270 GADATIRVWD  279 (325)
T ss_dssp             ETTSEEEEEE
T ss_pred             eCCCeEEEEE
Confidence            6678888888

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.15  E-value=13  Score=32.95  Aligned_cols=67  Identities=13%  Similarity=0.106  Sum_probs=42.0

Q ss_pred             eEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEECCCCE
Q 011333           86 YSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNMA  165 (488)
Q Consensus        86 ~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~N~r  165 (488)
                      ..|++.++|.++++-..++.|+.++.....  .+....+.                -..-..+++.+++...++=...+.
T Consensus       125 ~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~--~~~~~~~h----------------~~~v~~~~~~~~~~~~~~~~~~~~  186 (388)
T d1erja_         125 RSVCFSPDGKFLATGAEDRLIRIWDIENRK--IVMILQGH----------------EQDIYSLDYFPSGDKLVSGSGDRT  186 (388)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTTTE--EEEEECCC----------------SSCEEEEEECTTSSEEEEEETTSE
T ss_pred             EEEEECCCCCcceecccccccccccccccc--cccccccc----------------ccccccccccccccccccccccee
Confidence            568889999988877777889999876421  12222111                112346777777765554445677


Q ss_pred             EEEEc
Q 011333          166 IRKIS  170 (488)
Q Consensus       166 Irkid  170 (488)
                      |+.++
T Consensus       187 i~~~d  191 (388)
T d1erja_         187 VRIWD  191 (388)
T ss_dssp             EEEEE
T ss_pred             eeeee
Confidence            77777

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=80.42  E-value=15  Score=30.63  Aligned_cols=68  Identities=12%  Similarity=0.153  Sum_probs=46.4

Q ss_pred             ceEEEEccCCcEEEEECCCCeEEEEeCCCCcccccEEEecCCCCccccCCCcccccccCCcceEEEcCCCcEEEEECCCC
Q 011333           85 PYSVEVLPGGELLILDSANSNLYRISSSLSLYSRPKLVAGSAEGYSGHVDGKPREARMNHPKGLTVDDRGNIYIADTMNM  164 (488)
Q Consensus        85 P~GIaVd~dG~LYVaD~~n~rI~kid~~g~~~g~i~tvaG~~~G~~G~~dG~a~~a~Ln~P~GIAvD~dG~LYVAD~~N~  164 (488)
                      -..|+++++|+++++-...+.|+.++...+.  .+.++-+.                -..-..+++++++.++++-....
T Consensus        20 I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~--~~~~~~~h----------------~~~V~~~~~~~~~~~~~~~~~~~   81 (317)
T d1vyhc1          20 VTRVIFHPVFSVMVSASEDATIKVWDYETGD--FERTLKGH----------------TDSVQDISFDHSGKLLASCSADM   81 (317)
T ss_dssp             EEEEEECSSSSEEEEEESSSCEEEEETTTCC--CCEEECCC----------------SSCEEEEEECTTSSEEEEEETTS
T ss_pred             eEEEEEcCCCCEEEEEeCCCeEEEEECCCCC--EEEEEeCC----------------CCcEEEEeeeccccccccccccc
Confidence            3578889999988887677899999976532  23333221                11246789999998777766666


Q ss_pred             EEEEEc
Q 011333          165 AIRKIS  170 (488)
Q Consensus       165 rIrkid  170 (488)
                      .+...+
T Consensus        82 ~~~~~~   87 (317)
T d1vyhc1          82 TIKLWD   87 (317)
T ss_dssp             CCCEEE
T ss_pred             cccccc
Confidence            666665