Citrus Sinensis ID: 011340

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------49
Protein Sequence
MVSSGEDGLDEVASDKLQHEPGPVSETHALQSDQGFSTPILSRKSLMLPDTGHLLPSDQERSISSITSEKASQTTDIIPALQTGQEVSTPTIREKVSEDGYNWRKYGQKLVRGNEFVRSYYKCTHPRCLAKKQLDCTHEGQIVDTIYSGDHCHPKVPNVPLAVGIVVSVVEEKPEVSSISSAKDKSSDTHGQTPRQTERNDNSRLSVAAASGGMKDPLISNRMKDEVDNDDRPGSKRRKKDHFNANASPVEKLTGEHRVVQTLSEVDFVNDGYRWRKYGQKLVKGNPNPRNYYRCSNSGCPAKKHVERASHDPKLVITTYEGRHDHDMPPSRTVTPNVAGTKNSKTAHNGESAKLEEIDAVCSDTDVHRSSDTLSKSTEGKNGEPKTKSEATATASVGLVKSEQSAVHPESKSSEPQNGNSRTIEGSDVAHGRSCHKGSSNDQSNCESETKSEQNGTACRDKVIQATSLPDANYGEQEQTPKAEAVRS
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccEEEcccccEEEEEEcccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccEEEEEccccccEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccEEEccccccccEEEccccccccEEEEEEcccccEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccEEEEEccccccccccccHEHcccEEEcccccccccEEcccccccccEEEEEccccccEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccccccccccccccccccccccccccEEEEccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mvssgedgldevasdklqhepgpvsethalqsdqgfstpilsrkslmlpdtghllpsdqersissitsekasqttdiipalqtgqevstptirekvsedgynwrkYGQKlvrgnefvrsyykcthprclakkqldcthegqivdtiysgdhchpkvpnvplAVGIVVSVVeekpevssissakdkssdthgqtprqterndnsrLSVAaasggmkdplisnrmkdevdnddrpgskrrkkdhfnanaspvekltgeHRVVQTlsevdfvndgyrwrKYGQklvkgnpnprnyyrcsnsgcpakkhverashdpklvittyegrhdhdmppsrtvtpnvagtknsktahngesakleEIDAvcsdtdvhrssdtlskstegkngepktkseaTATASVGLvkseqsavhpeskssepqngnsrtiegsdvahgrschkgssndqsncesetkseqngtacrDKVIqatslpdanygeqeqtpkaeavrs
Flexible Loop (DISEMBL)
MVSSGEDGLDEVASDKLQHEPGPVsethalqsdqgFSTPILSRKSLMLPDTGHLLPSDQERSISSITsekasqttdiipalqtgqevstptirekvsedgynwrkygqklvrgNEFVRSYYKCTHPRCLAKKQLDCTHEGQIVDTIYSGDHCHPKVPNVPLAVGIVVSVVEEKpevssissakdkssdthgqtprqterndnsrlsvaaasggmkdplisnrmkdevdnddrpgskrrkkdhfnanaspvekltgehrvvqtlsevdfvndgyRWRKYgqklvkgnpnprnyYRCSNSGCPAKkhverashdpkLVITTyegrhdhdmppsrtvtpnvagtknsktahngesakleeidavcsdtdvhrssdtlskstegkngepktkseatatasVGLVKSeqsavhpeskssepqngnsRTIEGSDVAHGRSCHKgssndqsncesetkseqngtacRDKVIQAtslpdanygeqeqtpkaeavrs
Low Complexity Region (SEG)
MVSSGEDGLDEVASDKLQHEPGPVSETHALQSDQGFSTPILSRKSLMLPDTGHLLPSDQERSISSITSEKASQTTDIIPALQTGQEVSTPTIREKVSEDGYNWRKYGQKLVRGNEFVRSYYKCTHPRCLAKKQLDCTHEGQIVDTIYSGDHCHPKVPNVPLAVGIvvsvveekpevssissakdkssdTHGQTPRQTERNDNSRLSVAAASGGMKDPLISNRMKDEVDNDDRPGSKRRKKDHFNANASPVEKLTGEHRVVQTLSEVDFVNDGYRWRKYGQKLVKGNPNPRNYYRCSNSGCPAKKHVERASHDPKLVITTYEGRHDHDMPPSRTVTPNVAGTKNSKTAHNGESAKLEEIDAVCSDTDVHRSSDTLSKSTEGKNGEPKTKSEATATASVGLVKSEQSAVHPESKSSEPQNGNSRTIEGSDVAHGRSCHKGSSNDQSNCESETKSEQNGTACRDKVIQATSLPDANYGEQEQTPKAEAVRS
Disordered region (IsUnstruct)
*************************************************************************************************EDGYNWRKYGQKLVRGNEFVRSYYKCTHPRCLAKKQLDCTHEGQIVDTIYSGDHCHPKVPNVPLAVGIVVSVV**************************************************************************************HRVVQTLSEVDFVNDGYRWRKYGQKLVKGNPNPRNYYRCS********************I***************************************************************************************************************************************************************************
Disordered Region (DISOPRED)
**************************************************************************************************DGYNWRKYGQKLVR*NEFVRSYYKCTHPRCLAKKQLDCTHEGQIVDTIYSGDHCHPKVPNVPLAVGIVVSVVEEKPEVSSISSAKDKSSDTHGQTPRQTERNDNSRLSVAAASGGMKDPLISNRMKDEVDNDDR**********************************DFVNDGYRWRKYGQKLVKGNPNPRNYYRCSNSGCPAKKHVERASHDPKLVITTYEGRHDH******************************************************************************************************************************************************************
Disordered Region (DISEMBL)
**************DKLQHEPGPVSETHALQSDQGFSTPILSRKSLMLPDTGHLLPSDQERSISSITSEKASQTTDIIPALQTGQEVSTPTIREKVSEDGYNWRKYGQKLVRGNEFVRSYYKCTHPRCLAKKQLDCTHEGQIVDTIYSGDHCHPKVPNVPLAVGIVVSVVEE*******************************RLSVAAASGGMKDPLISNRMK*****************HFNANASPVEKLTGEHRVVQTLSEVDFVNDGYRWRKYGQKLVKGNPNPRNYYRCSNSGCPAKKHVERASHDPKLVITTYEGRHDHDMPPSRTVTPNVAGTKNSKTAHNGESAKLEEIDAVCS*****************************ATASVGLV*********************************************************ACRDKVIQATSLPDAN***************
Disordered Region (DISPRO)
***********************************************************************************************VSEDGYNWRKYGQKLVRGNEFVRSYYKCTHPRCLAKKQLDCTHEGQIVDTIYSGDHC*******************************************************************************************************EHRVVQTLSEVDFVNDGYRWRKYGQKLVKGNPNPRNYYRCSNSGCPAKKHVERASHDPKLVITTYEGRH**************************************************************************************************************************************************DA****************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVSSGEDGLDEVASDKLQHEPGPVSETHALQSDQGFSTPILSRKSLMLPDTGHLLPSDQERSISSITSEKASQTTDIIPALQTGQEVSTPTIREKVSEDGYNWRKYGQKLVRGNEFVRSYYKCTHPRCLAKKQLDCTHEGQIVDTIYSGDHCHPKVPNVPLAVGIVVSVVEEKPEVSSISSAKDKSSDTHGQTPRQTERNDNSRLSVAAASGGMKDPLISNRMKDEVDNDDRPGSKRRKKDHFNANASPVEKLTGEHRVVQTLSEVDFVNDGYRWRKYGQKLVKGNPNPRNYYRCSNSGCPAKKHVERASHDPKLVITTYEGRHDHDMPPSRTVTPNVAGTKNSKTAHNGESAKLEEIDAVCSDTDVHRSSDTLSKSTEGKNGEPKTKSEATATASVGLVKSEQSAVHPESKSSEPQNGNSRTIEGSDVAHGRSCHKGSSNDQSNCESETKSEQNGTACRDKVIQATSLPDANYGEQEQTPKAEAVRS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	488	2.2.26 [Sep-21-2011]
Q9SI37	487	WRKY transcription factor	yes	no	0.573	0.574	0.496	1e-70
Q93WV0	557	Probable WRKY transcripti	no	no	0.508	0.445	0.503	3e-62
Q9FG77	687	Probable WRKY transcripti	no	no	0.483	0.343	0.431	2e-50
Q8S8P5	519	Probable WRKY transcripti	no	no	0.5	0.470	0.445	1e-49
O65590	568	Probable WRKY transcripti	no	no	0.715	0.614	0.346	1e-49
Q9ZQ70	513	Probable WRKY transcripti	no	no	0.516	0.491	0.392	9e-49
Q9XI90	514	Probable WRKY transcripti	no	no	0.571	0.542	0.374	5e-47
Q9C5T3	309	Probable WRKY transcripti	no	no	0.368	0.582	0.398	2e-43
Q9ZUU0	429	WRKY transcription factor	no	no	0.530	0.603	0.384	2e-43
Q93WU7	423	Probable WRKY transcripti	no	no	0.415	0.479	0.423	3e-41

>sp|Q9SI37|WRKY1_ARATH WRKY transcription factor 1 OS=Arabidopsis thaliana GN=WRKY1 PE=1 SV=1

 Score =  268 bits (684), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 157/316 (49%), Positives = 199/316 (62%), Gaps = 36/316 (11%)

Query: 53  HLLPSDQERSISSITSEKASQTTDIIPAL--QTGQEVSTPTIREKVSEDGYNWRKYGQKL 110
           H + S  E  ++S  SEKA + ++   AL  Q+G E ++P IREKV EDGYNWRKYGQKL
Sbjct: 64  HTVASQSEVDVASPVSEKAPKVSESSGALSLQSGSEGNSPFIREKVMEDGYNWRKYGQKL 123

Query: 111 VRGNEFVRSYYKCTHPRCLAKKQLDCTHEGQIVDTIYSGDHCHPKVPNVPLAVGI----- 165
           V+GNEFVRSYY+CTHP C AKKQL+ +  GQ+VDT+Y G+H HPK    PLA  +     
Sbjct: 124 VKGNEFVRSYYRCTHPNCKAKKQLERSAGGQVVDTVYFGEHDHPK----PLAGAVPINQD 179

Query: 166 -----------------VVSVVEEKPEVSSISSAKDKSSDTHGQTPRQTE---RNDNSRL 205
                            +VS++ +   VS      +K+S +  QT RQTE    +    +
Sbjct: 180 KRSDVFTAVSKGEQRIDIVSLIYKLCIVSYDIMFVEKTSGSSVQTLRQTEPPKIHGGLHV 239

Query: 206 SVAAASGGMK-DPLISNRMKDEVDNDDR--PGSKRRKKDHFNANASPVEKLTGEHR-VVQ 261
           SV   +  +K D   S+R+  +  + D   P +KRRKK   N   SPVE+ T + R VV 
Sbjct: 240 SVIPPADDVKTDISQSSRITGDNTHKDYNSPTAKRRKKGG-NIELSPVERSTNDSRIVVH 298

Query: 262 TLSEVDFVNDGYRWRKYGQKLVKGNPNPRNYYRCSNSGCPAKKHVERASHDPKLVITTYE 321
           T +  D VNDGYRWRKYGQK VKG+P PR+YYRCS+ GCP KKHVER+SHD KL+ITTYE
Sbjct: 299 TQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLLITTYE 358

Query: 322 GRHDHDMPPSRTVTPN 337
           G+HDHDMPP R VT N
Sbjct: 359 GKHDHDMPPGRVVTHN 374

Transcription factor. Binds to a 5'-CGTTGACCGAG-3' consensus core sequence which contains a W box, a frequently occurring elicitor-responsive cis-acting element.
Arabidopsis thaliana (taxid: 3702)

>sp|Q93WV0|WRK20_ARATH Probable WRKY transcription factor 20 OS=Arabidopsis thaliana GN=WRKY20 PE=2 SV=1

 Score =  239 bits (610), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 130/258 (50%), Positives = 169/258 (65%), Gaps = 10/258 (3%)

Query: 80  ALQTGQ---EVSTPTIREKVSEDGYNWRKYGQKLVRGNEFVRSYYKCTHPRCLAKKQLDC 136
           ++QT Q     STP+I   +++DGYNWRKYGQK V+G+EF RSYYKCTHP C  KK  + 
Sbjct: 193 SIQTSQNDSRGSTPSI---LADDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFER 249

Query: 137 THEGQIVDTIYSGDHCHPKVPNVPLAVGIVVSVVEEKPEVSSISSAKDKSSDTHGQTPRQ 196
           +H+GQI D IY G H HPK P         ++  EE+ +    S+ +D+           
Sbjct: 250 SHDGQITDIIYKGTHDHPK-PQPGRRNSGGMAAQEERLDKYPSSTGRDEKGSGVYNLSNP 308

Query: 197 TERNDNSRLSVAAASGGMKDPLISNRMKDEVDNDDRPGSKRRKKDHFNANASPVEKLTGE 256
            E+  N  +   +AS    +   SNR KDE D+DD P SKRR+ +      +P+ K   E
Sbjct: 309 NEQTGNPEVPPISASDDGGEAAASNRNKDEPDDDD-PFSKRRRMEG-AMEITPLVKPIRE 366

Query: 257 HRVV-QTLSEVDFVNDGYRWRKYGQKLVKGNPNPRNYYRCSNSGCPAKKHVERASHDPKL 315
            RVV QTLSEVD ++DGYRWRKYGQK+V+GNPNPR+YY+C+  GCP +KHVERASHDPK 
Sbjct: 367 PRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTAHGCPVRKHVERASHDPKA 426

Query: 316 VITTYEGRHDHDMPPSRT 333
           VITTYEG+HDHD+P S++
Sbjct: 427 VITTYEGKHDHDVPTSKS 444

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FG77|WRKY2_ARATH Probable WRKY transcription factor 2 OS=Arabidopsis thaliana GN=WRKY2 PE=2 SV=1

 Score =  200 bits (508), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 120/278 (43%), Positives = 158/278 (56%), Gaps = 42/278 (15%)

Query: 97  SEDGYNWRKYGQKLVRGNEFVRSYYKCTHPRCLAKKQLDCTHEGQIVDTIYSGDHCHPKV 156
           +EDGYNWRKYGQKLV+G+E+ RSYYKCT+P C  KK+++ + EG I + IY G H H K 
Sbjct: 272 AEDGYNWRKYGQKLVKGSEYPRSYYKCTNPNCQVKKKVERSREGHITEIIYKGAHNHLKP 331

Query: 157 P-NVPLAVGIVVSVVEEKPEVSSISSAKDKSSDTHGQTPRQTERN----------DNSRL 205
           P N    + +  +   E+ +    S+A   S +   Q     E N           N   
Sbjct: 332 PPNRRSGMQVDGTEQVEQQQQQRDSAATWVSCNNTQQQGGSNENNVEEGSTRFEYGNQSG 391

Query: 206 SVAAASGGMK---DPLI----SNRMKDEVDNDDRPG-----------------------S 235
           S+ A +GG     DP++    S+   ++ D DDR                         S
Sbjct: 392 SIQAQTGGQYESGDPVVVVDASSTFSNDEDEDDRGTHGSVSLGYDGGGGGGGGEGDESES 451

Query: 236 KRRKKDHFNANASPVEKLTGEHRVV-QTLSEVDFVNDGYRWRKYGQKLVKGNPNPRNYYR 294
           KRRK + F A  S   +   E RVV QT S+VD ++DGYRWRKYGQK+VKGNPNPR+YY+
Sbjct: 452 KRRKLEAFAAEMSGSTRAIREPRVVVQTTSDVDILDDGYRWRKYGQKVVKGNPNPRSYYK 511

Query: 295 CSNSGCPAKKHVERASHDPKLVITTYEGRHDHDMPPSR 332
           C+  GC  +KHVERASHD K VITTYEG+H+HD+P +R
Sbjct: 512 CTAPGCTVRKHVERASHDLKSVITTYEGKHNHDVPAAR 549

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8S8P5|WRK33_ARATH Probable WRKY transcription factor 33 OS=Arabidopsis thaliana GN=WRKY33 PE=1 SV=2

 Score =  198 bits (503), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 115/258 (44%), Positives = 150/258 (58%), Gaps = 14/258 (5%)

Query: 85  QEVSTPTIREKVSEDGYNWRKYGQKLVRGNEFVRSYYKCTHPRCLAKKQLDCTHEGQIVD 144
           Q VS     ++  EDGYNWRKYGQK V+G+E  RSYYKCT P C  KK+++ + EGQI +
Sbjct: 171 QAVSYNGREQRKGEDGYNWRKYGQKQVKGSENPRSYYKCTFPNCPTKKKVERSLEGQITE 230

Query: 145 TIYSGDHCHPKVPNVPLAVGIVVSVVEEKPEVSSISSAKDKSSD-------THGQTPRQT 197
            +Y G H HPK P          S        +S+   +  SSD        H       
Sbjct: 231 IVYKGSHNHPK-PQSTRRSSSSSSTFHSAVYNASLDHNRQASSDQPNSNNSFHQSDSFGM 289

Query: 198 ERNDNSRL-SVAAASGGMKDPLISNRMKDEVDNDDRPGSKRRKKDH-FNANASPVEKLTG 255
           ++ DN+   SV          ++S   +DE D    P +KR K D+  N       K   
Sbjct: 290 QQEDNTTSDSVGDDEFEQGSSIVS---RDEEDCGSEPEAKRWKGDNETNGGNGGGSKTVR 346

Query: 256 EHR-VVQTLSEVDFVNDGYRWRKYGQKLVKGNPNPRNYYRCSNSGCPAKKHVERASHDPK 314
           E R VVQT S++D ++DGYRWRKYGQK+VKGNPNPR+YY+C+  GCP +KHVERASHD +
Sbjct: 347 EPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTIGCPVRKHVERASHDMR 406

Query: 315 LVITTYEGRHDHDMPPSR 332
            VITTYEG+H+HD+P +R
Sbjct: 407 AVITTYEGKHNHDVPAAR 424

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|O65590|WRK34_ARATH Probable WRKY transcription factor 34 OS=Arabidopsis thaliana GN=WRKY34 PE=2 SV=1

 Score =  197 bits (502), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 145/419 (34%), Positives = 209/419 (49%), Gaps = 70/419 (16%)

Query: 36  FSTPILSRKSLMLPDTGHL--LPSDQERS--ISSITSEKASQT--------TDIIPAL-- 81
             +P+     L+ P TG L  +PSD+ ++     IT+  A QT        T+I  AL  
Sbjct: 96  LESPVFLSNPLLSPTTGKLSSVPSDKAKAELFDDITTSLAFQTISGSGLDPTNI--ALEP 153

Query: 82  ---QTGQEVSTPTIREKVS-----EDGYNWRKYGQKLVRGNEFVRSYYKCTHPRCLAKKQ 133
              Q  +E     + + ++     +DGYNWRKYGQKLV+G+E+ RSYYKCTHP C AKK+
Sbjct: 154 DDSQDYEERQLGGLGDSMACCAPADDGYNWRKYGQKLVKGSEYPRSYYKCTHPNCEAKKK 213

Query: 134 LDCTHEGQIVDTIYSGDHCHPKVP-NVPLAVGIVVSVVEEKPEVSSISSAKDKSSDTHGQ 192
           ++ + EG I++ IY+GDH H K P N    +G   +  + + + +        + +    
Sbjct: 214 VERSREGHIIEIIYTGDHIHSKPPPNRRSGIGSSGTGQDMQIDATEYEGFAGTNENIEWT 273

Query: 193 TPRQTERNDNSRL-SVAAASG----GMKDPLISNRMKDEVDNDDRPG------------- 234
           +P   E    S   S+   +G    G  D       +DE + DDR               
Sbjct: 274 SPVSAELEYGSHSGSMQVQNGTHQFGYGDAAADALYRDE-NEDDRTSHMSVSLTYDGEVE 332

Query: 235 ---SKRRKKDHFNANASPVEKLTGEHRVV-QTLSEVDFVNDGYRWRKYGQKLVKGNPNPR 290
              SKRRK + +    S   + + E RVV QT S++D ++DGYRWRKYGQK+VKGNPNPR
Sbjct: 333 ESESKRRKLEAYATETSGSTRASREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPR 392

Query: 291 NYYRCSNSGCPAKKHVERASHDPKLVITTYEGRHDHDMPPSRTVTPNVAGTKNSKTAHNG 350
           +YY+C+ +GC   KHVERAS D K V+TTY G+H H +P +R          NS     G
Sbjct: 393 SYYKCTANGCTVTKHVERASDDFKSVLTTYIGKHTHVVPAAR----------NSSHVGAG 442

Query: 351 ESAKLEEIDAVCSDTDVHRSSDTLSKSTEGKNGEPKTKSEATATASVGLVKSEQSAVHP 409
            S  L+   ++ + T  H     +          P ++SE  ATA+  L   +    HP
Sbjct: 443 SSGTLQ--GSLATQTHNHNVHYPM----------PHSRSEGLATANSSLFDFQSHLRHP 489

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZQ70|WRKY3_ARATH Probable WRKY transcription factor 3 OS=Arabidopsis thaliana GN=WRKY3 PE=2 SV=1

 Score =  194 bits (494), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 115/293 (39%), Positives = 165/293 (56%), Gaps = 41/293 (13%)

Query: 56  PSDQERSISSITSEKASQTTDIIPALQTGQEVSTPTIREKVSEDGYNWRKYGQKLVRGNE 115
           P  Q R+    TS+   +T++I       +  S P   +K ++DGYNWRKYGQK V+G++
Sbjct: 212 PRSQIRASVQETSQGQRETSEI----SVFEHRSQPQNADKPADDGYNWRKYGQKQVKGSD 267

Query: 116 FVRSYYKCTHPRCLAKKQLDCTHEGQIVDTIYSGDHCHPKVPNVPLAVG-----IVVSVV 170
           F RSYYKCTHP C  KK+++ + +GQ+ + IY G H H     +P   G        S +
Sbjct: 268 FPRSYYKCTHPACPVKKKVERSLDGQVTEIIYKGQHNH----ELPQKRGNNNGSCKSSDI 323

Query: 171 EEKPEVSSIS---SAKDKSSDTHGQTPRQTERNDNSRLSVAAASGGMKDPLISNRMKDEV 227
             + + S+ S   S +D+ +     T + +E +D+  +  A  S G +            
Sbjct: 324 ANQFQTSNSSLNKSKRDQETSQVTTTEQMSEASDSEEVGNAETSVGER------------ 371

Query: 228 DNDDRPGSKRRKKDHFNANASPVEKLTGEHR-------VVQTLSEVDFVNDGYRWRKYGQ 280
            ++D P  KRR     N      E +   HR       +VQT SEVD ++DGYRWRKYGQ
Sbjct: 372 -HEDEPDPKRR-----NTEVRVSEPVASSHRTVTEPRIIVQTTSEVDLLDDGYRWRKYGQ 425

Query: 281 KLVKGNPNPRNYYRCSNSGCPAKKHVERASHDPKLVITTYEGRHDHDMPPSRT 333
           K+VKGNP PR+YY+C+   C  +KHVERA+ DPK V+TTYEG+H+HD+P +RT
Sbjct: 426 KVVKGNPYPRSYYKCTTPDCGVRKHVERAATDPKAVVTTYEGKHNHDVPAART 478

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9XI90|WRKY4_ARATH Probable WRKY transcription factor 4 OS=Arabidopsis thaliana GN=WRKY4 PE=1 SV=2

 Score =  189 bits (479), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 112/299 (37%), Positives = 169/299 (56%), Gaps = 20/299 (6%)

Query: 47  MLPDTGHLLPSDQERSISSITSEKAS-QTTDIIPALQTGQEVST-------PTIREKVSE 98
           M P T +  PS     + S +S +A   T+  +PA +   +V+        P   +K ++
Sbjct: 174 MQPQTEYPPPSQ----VQSFSSGQAQIPTSAPLPAQRETSDVTIIEHRSQQPLNVDKPAD 229

Query: 99  DGYNWRKYGQKLVRGNEFVRSYYKCTHPRCLAKKQLDCTHEGQIVDTIYSGDHCHPKVPN 158
           DGYNWRKYGQK V+G+EF RSYYKCT+P C  KK+++ + +GQ+ + IY G H H    N
Sbjct: 230 DGYNWRKYGQKQVKGSEFPRSYYKCTNPGCPVKKKVERSLDGQVTEIIYKGQHNHEPPQN 289

Query: 159 VPLAVGIVVSVVEEKPEVSSISSAKDKSSDTHGQTPRQTERNDNSRLSVAAASGGMKDPL 218
                    + +      ++  S++  +S     +  +T+R  +  +S A  +  + +  
Sbjct: 290 TKRGNKDNTANINGSSINNNRGSSELGASQFQTNSSNKTKREQHEAVSQATTTEHLSEAS 349

Query: 219 ----ISNRMKDEVDNDD-RPGSKRRKKDHFNANASPV---EKLTGEHRVVQTLSEVDFVN 270
               + N   D  + D+  P  KRR  +   +  +P      +T    +VQT SEVD ++
Sbjct: 350 DGEEVGNGETDVREKDENEPDPKRRSTEVRISEPAPAASHRTVTEPRIIVQTTSEVDLLD 409

Query: 271 DGYRWRKYGQKLVKGNPNPRNYYRCSNSGCPAKKHVERASHDPKLVITTYEGRHDHDMP 329
           DGYRWRKYGQK+VKGNP PR+YY+C+  GC  +KHVERA+ DPK V+TTYEG+H+HD+P
Sbjct: 410 DGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLP 468

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C5T3|WRK26_ARATH Probable WRKY transcription factor 26 OS=Arabidopsis thaliana GN=WRKY26 PE=2 SV=2

 Score =  177 bits (449), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 96/241 (39%), Positives = 137/241 (56%), Gaps = 61/241 (25%)

Query: 95  KVSEDGYNWRKYGQKLVRGNEFVRSYYKCTHPRCLAKKQLDCTH-EGQIVDTIYSGDHCH 153
           K S+DGYNWRKYGQK V+G+E  RSY+KCT+P CL KK+++ +  +GQ+++ +Y G H H
Sbjct: 114 KTSDDGYNWRKYGQKQVKGSENPRSYFKCTYPNCLTKKKVETSLVKGQMIEIVYKGSHNH 173

Query: 154 PKVPNVPLAVGIVVSVVEEKPEVSSISSAKDKSSDTHGQTPRQTERNDNSRLSV--AAAS 211
           PK                                      P+ T+R+ ++ ++    +++
Sbjct: 174 PK--------------------------------------PQSTKRSSSTAIAAHQNSSN 195

Query: 212 GGMKDPLISNRMKDEVDNDDRPGSKRRKKDHFNANASPVEKLTGEHRVVQTLSEVDFVND 271
           G  KD             +D   +KR K++         E +     VVQT S++D ++D
Sbjct: 196 GDGKD-----------IGEDETEAKRWKRE---------ENVKEPRVVVQTTSDIDILDD 235

Query: 272 GYRWRKYGQKLVKGNPNPRNYYRCSNSGCPAKKHVERASHDPKLVITTYEGRHDHDMPPS 331
           GYRWRKYGQK+VKGNPNPR+YY+C+ +GC  +KHVERA  DPK VITTYEG+H H +P  
Sbjct: 236 GYRWRKYGQKVVKGNPNPRSYYKCTFTGCFVRKHVERAFQDPKSVITTYEGKHKHQIPTP 295

Query: 332 R 332
           R
Sbjct: 296 R 296

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZUU0|WRK44_ARATH WRKY transcription factor 44 OS=Arabidopsis thaliana GN=WRKY44 PE=1 SV=2

 Score =  177 bits (448), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 117/304 (38%), Positives = 162/304 (53%), Gaps = 45/304 (14%)

Query: 61  RSISSITSEKASQTTDIIPALQTGQEVSTPTIREKVSEDGYNWRKYGQKLVRGNEFVRSY 120
           +S+S  T          +P+  T  E ST    ++ S DGYNWRKYGQK V+G+E  RSY
Sbjct: 132 KSVSQGTHRAGPNLVQKVPSF-TESETST---GDRSSVDGYNWRKYGQKQVKGSECPRSY 187

Query: 121 YKCTHPRCLAKKQLDCTHEGQIVDTIYSGDHCHPKVPNVPL---AVGIVVSVVEEKPEVS 177
           YKCTHP+C  KK+++ + EGQ+ + +Y G+H H K P+ PL   A   + S  ++ P+  
Sbjct: 188 YKCTHPKCPVKKKVERSVEGQVSEIVYQGEHNHSK-PSCPLPRRASSSISSGFQKPPK-- 244

Query: 178 SISSAKDKSSD-----------------THGQTPRQTERNDNSRLSVAA-----ASGGMK 215
           SI+S      D                 T  +T + +E    +    A      ++ G  
Sbjct: 245 SIASEGSMGQDPNNNLYSPLWNNQSNDSTQNRTEKMSEGCVITPFEFAVPRSTNSNPGTS 304

Query: 216 DPLISNRMKDEVDNDDRPGSKRRKKDHFNANASPVEKLTGEHRVVQTLSEVDFVNDGYRW 275
           D    +   DE + DD   SKRRK           EK + E  V Q   E D + DG+RW
Sbjct: 305 DSGCKSSQCDEGELDDPSRSKRRKN----------EKQSSEAGVSQGSVESDSLEDGFRW 354

Query: 276 RKYGQKLVKGNPNPRNYYRCSNSGCPAKKHVERASHDPKLVITTYEGRHDHDM---PPSR 332
           RKYGQK+V GN  PR+YYRC+++ C A+KHVERAS DP+  ITTYEG+H+H +   PPS 
Sbjct: 355 RKYGQKVVGGNAYPRSYYRCTSANCRARKHVERASDDPRAFITTYEGKHNHHLLLSPPSS 414

Query: 333 TVTP 336
           +  P
Sbjct: 415 STLP 418

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Regulates trichome development, production of mucilage and tannin in seed coats, and maybe root hair development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93WU7|WRK58_ARATH Probable WRKY transcription factor 58 OS=Arabidopsis thaliana GN=WRKY58 PE=2 SV=2

 Score =  169 bits (429), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 100/236 (42%), Positives = 134/236 (56%), Gaps = 33/236 (13%)

Query: 94  EKVSEDGYNWRKYGQKLVRGNEFVRSYYKCTHPRCLAKKQLDCTHEGQIVDTIYSGDHCH 153
           +K ++DGYNWRKYGQK ++G E+ RSYYKCTH  C  KK+++ + +GQI   IY G H H
Sbjct: 163 DKPADDGYNWRKYGQKPIKGCEYPRSYYKCTHVNCPVKKKVERSSDGQITQIIYKGQHDH 222

Query: 154 PKVPNVPLAVGIVVSVVEEKPEVSSISSAKDKSSDTHGQTPRQTERNDNSRLSVAAASGG 213
                             E+P+       +D  S   G   +  E +D+S          
Sbjct: 223 ------------------ERPQNRRGGGGRD--STEVGGAGQMMESSDDSGYRKDHDD-- 260

Query: 214 MKDPLISNRMKDEVDNDDRPGSKRRKKDHFNANASPVEKLTGEHRVVQTLSEVDFVNDGY 273
                      D+ D++D P SK R+ D  +     V   T    +VQT SEVD ++DGY
Sbjct: 261 --------DDDDDEDDEDLPASKIRRIDGVSTTHRTV---TEPKIIVQTKSEVDLLDDGY 309

Query: 274 RWRKYGQKLVKGNPNPRNYYRCSNSGCPAKKHVERASHDPKLVITTYEGRHDHDMP 329
           RWRKYGQK+VKGNP+PR+YY+C+   C  +KHVERAS D K VITTYEG+H+HD+P
Sbjct: 310 RWRKYGQKVVKGNPHPRSYYKCTTPNCTVRKHVERASTDAKAVITTYEGKHNHDVP 365

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	488
255586449	484	WRKY transcription factor, putative [Ric	0.956	0.964	0.475	2e-98
332656176	479	WRKY protein [Hevea brasiliensis]	0.926	0.943	0.475	6e-97
259121369	486	WRKY transcription factor 2 [(Populus to	0.829	0.833	0.472	8e-91
225447598	407	PREDICTED: probable WRKY transcription f	0.735	0.882	0.527	4e-87
296084997	364	unnamed protein product [Vitis vinifera]	0.577	0.774	0.609	1e-83
449453594	433	PREDICTED: probable WRKY transcription f	0.780	0.879	0.498	1e-83
356499487	507	PREDICTED: WRKY transcription factor 1-l	0.829	0.798	0.449	5e-83
302121700	491	WRKY-like protein [Hypericum perforatum]	0.897	0.892	0.429	4e-82
356551757	508	PREDICTED: WRKY transcription factor 1-l	0.885	0.850	0.430	5e-77
312282555	468	unnamed protein product [Thellungiella h	0.647	0.675	0.492	5e-72

>gi|255586449|ref|XP_002533869.1| WRKY transcription factor, putative [Ricinus communis] gi|223526191|gb|EEF28519.1| WRKY transcription factor, putative [Ricinus communis]

 Score =  365 bits (938), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 240/505 (47%), Positives = 310/505 (61%), Gaps = 38/505 (7%)

Query: 1   MVSSGEDGLDEVASDKLQHEPGPVSETHALQSDQGFSTPILSRKSLMLPDTG---HLLPS 57
           MVSSGE   DEVAS+KLQ    P +E H  Q+ +  ++  L  KSL  PD      +   
Sbjct: 1   MVSSGER-TDEVASNKLQKGQSPDNEIHVSQNQEEVTSVTL-EKSLQDPDVSAGVRISQL 58

Query: 58  DQERSISSITSEKASQTTDIIPAL-QTGQEVSTPTIREKVSEDGYNWRKYGQKLVRGNEF 116
           D+E SISSI   K SQT     ++ Q+G E  +  +REKV+EDGY+WRKYGQKLV+GNEF
Sbjct: 59  DKEGSISSIILGKVSQTPGTSSSVTQSGPEERS-ILREKVTEDGYHWRKYGQKLVKGNEF 117

Query: 117 VRSYYKCTHPRCLAKKQLDCTHEGQIVDTIYSGDHCHPK-VPNVPLAVGIVVSVVEEKPE 175
           +RSYYKCTHP C  KKQL+ +H GQ+VD +Y G H HPK   NVPLAVG V+SVVE++  
Sbjct: 118 IRSYYKCTHPNCQVKKQLERSHNGQVVDIVYFGPHNHPKPANNVPLAVGFVLSVVEDR-- 175

Query: 176 VSSISSAKDKSSDTHGQTPRQTERNDNSRLSVAAASGGMKDPLI-SNRMKDEVDNDDRPG 234
            +S   +  K  D   Q P+      NS++S  A+S  +K  L  S R++DEVDNDD   
Sbjct: 176 -ASQPLSTSKQEDHVNQLPKS---KSNSQISTVASSEDVKGVLSESTRIRDEVDNDDDLQ 231

Query: 235 SKRRKKDHFNANASPVEKLTGEHR-VVQTLSEVDFVNDGYRWRKYGQKLVKGNPNPRNYY 293
           SKR+KK   N   + V+K +GE R VVQTLSEVD VNDGYRWRKYGQKLVKGNPNPR+YY
Sbjct: 232 SKRQKKGSHNVEPTSVDKPSGEPRLVVQTLSEVDIVNDGYRWRKYGQKLVKGNPNPRSYY 291

Query: 294 RCSNSGCPAKKHVERASHDPKLVITTYEGRHDHDMPPSRTVTPNVAGTKNSKTA-HNGE- 351
           RCS+ GCP KKHVERASHD K+VIT+YEG HDH+MPPSRTVT N  G     TA H+GE 
Sbjct: 292 RCSSPGCPVKKHVERASHDSKVVITSYEGEHDHEMPPSRTVTHNPTGVNIYTTAVHSGEL 351

Query: 352 SAKLEEIDAVCSDTDVHRSSDTLSKSTEGKNGEPKTKSEATATASVGLVKSEQSAVHPES 411
            AK    + V  +    R+S    + +E +N   K K    + + + +     S    ++
Sbjct: 352 GAKSGGSNGVVHNLGSSRNSK--EQPSESRN---KFKGSHVSGSEIVIF----SGSGQDN 402

Query: 412 KSSEPQNGNSRTIEGSD--------VAHGRSCHKGSSNDQSNCESETKSEQNGTACRDKV 463
           K ++ QNG S   EGSD        V +  S  +G SN+Q + ES T+ + N +AC  + 
Sbjct: 403 KLNQLQNGKSIATEGSDTAGMDKHTVVNTSSVPQGRSNEQHDGESRTEPKVNYSACSVRT 462

Query: 464 IQATSLPDANYGEQEQTPKAEAVRS 488
           I   +  + N   ++  P AE V+S
Sbjct: 463 ITPNAESNPN---EKHIPNAEPVQS 484

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|332656176|gb|AEE81757.1| WRKY protein [Hevea brasiliensis]

 Score =  361 bits (926), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 242/509 (47%), Positives = 302/509 (59%), Gaps = 57/509 (11%)

Query: 1   MVSSGEDGLDEVASDKLQHEPGPVSETHALQS--DQGFS-------TPILSRKSLMLPDT 51
           MVSS E G DE ASD+LQ +  P + +H  Q   D G         TP+ S K++   + 
Sbjct: 7   MVSSRE-GTDEFASDELQKQQSPDNGSHTTQEIDDNGIHTSQNEEVTPVTSDKTMQDANA 65

Query: 52  G-HLLPSDQERSISSITSEKASQTTDI-IPALQTGQEVSTPTIREKVSEDGYNWRKYGQK 109
           G H+   D+E SISSI   K SQT      ALQ+GQE   P +REKVSEDGY+WRKYGQK
Sbjct: 66  GVHISQLDKEGSISSIIPGKVSQTPGPRSSALQSGQEGRIPIVREKVSEDGYHWRKYGQK 125

Query: 110 LVRGNEFVRSYYKCTHPRCLAKKQLDCTHEGQIVDTIYSGDHCHPKVP-NVPLAVGIVVS 168
           LV+GNEF+RSYYKCTHP C  KKQL+ + +GQI D IY G H HPK   N+P AVG V+ 
Sbjct: 126 LVKGNEFIRSYYKCTHPSCQVKKQLEHSQDGQIADIIYFGQHDHPKPEHNLPQAVGFVLP 185

Query: 169 VVEEKP-EVSSISSAKDKSSDTHGQTPRQTERNDNSRLSVAAASGGMKDPLI-SNRMKDE 226
           VV+E   E SS  + +D++       P   +    S++SV   S   K  L  SN++KDE
Sbjct: 186 VVKETADEPSSTGTEEDRA-------PHLLKSTSTSKISVGTRSENAKGALSESNKIKDE 238

Query: 227 VDNDDRPGSKRRKKDHFNANASPVEKLTGEHR-VVQTLSEVDFVNDGYRWRKYGQKLVKG 285
           VDNDD P SKR+KK + N     V+K T E R V+QTLSE+D VNDGYRWRKYGQKLVKG
Sbjct: 239 VDNDDEPRSKRQKKGNHNVELMVVDKPTSEPRHVIQTLSEIDIVNDGYRWRKYGQKLVKG 298

Query: 286 NPNPRNYYRCSNSGCPAKKHVERASHDPKLVITTYEGRHDHDMPPSRTVTPNVAGTKNSK 345
           NPNPR+YYRCS+ GCP KKHVERASHDPK+VIT+YEG+HDHD+PPSRTVT N  G   S 
Sbjct: 299 NPNPRSYYRCSSPGCPVKKHVERASHDPKVVITSYEGQHDHDVPPSRTVTHNATGVSAS- 357

Query: 346 TAHNGESAKLEEIDAVCSDTDVHRSSDTLSKSTEGKNGEPKTKSEATATASVGLVKSEQS 405
             ++GES       +  SD   + S D    S E  N    +KS++              
Sbjct: 358 NMNSGESG----TKSGASDGVPNNSLDPSGNSKEQLN----SKSDSGD------------ 397

Query: 406 AVHPESKSSEPQNGNSRTIEGSDVA------HGRSCHKGSSNDQSNCESETKSEQNGTAC 459
               + KSS+P NG S   EGS  A      +  S  +  S +Q + ES T+S+    A 
Sbjct: 398 ----DGKSSKPWNGKSSAKEGSGAAVMDTVDNTSSMSECRSIEQHDGESRTESKVICAAY 453

Query: 460 RDKVIQATSLPDANYGEQEQTPKAEAVRS 488
               I  T +P+ N  EQ + P AE V+S
Sbjct: 454 SAHAI--TPVPETNPNEQ-RIPNAEPVQS 479

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|259121369|gb|ACV92004.1| WRKY transcription factor 2 [(Populus tomentosa x P. bolleana) x P. tomentosa]

 Score =  340 bits (873), Expect = 8e-91,   Method: Compositional matrix adjust.
 Identities = 207/438 (47%), Positives = 268/438 (61%), Gaps = 33/438 (7%)

Query: 52  GHLLPSDQERSISSITSEKASQTTDI-IPALQTGQEVSTPTIREKVSEDGYNWRKYGQKL 110
           G +   D+E S+SSIT  K S      + ++Q+GQE  TP +REKVSEDGY+WRKYGQKL
Sbjct: 60  GRISELDKEGSVSSITPRKVSHAPGSDLRSMQSGQEGRTPIMREKVSEDGYHWRKYGQKL 119

Query: 111 VRGNEFVRSYYKCTHPRCLAKKQLDCTHEGQIVDTIYSGDHCHPKVP-NVPLAVGIVVSV 169
           V+GNEF+RSYYKCTHP C AKKQL+C+H+G++ D +Y G+H HPK   N+P AVG V+SV
Sbjct: 120 VKGNEFIRSYYKCTHPSCQAKKQLECSHDGKLADIVYLGEHEHPKPQHNLPQAVGCVLSV 179

Query: 170 VEEKPEVSSISSAKDKSSDTHGQTPRQTERNDNSRLSVAAASGGMKDPLIS-NRMKDEVD 228
           VEEKP+   ++  ++         P   E  + S++S   +S  +K  L    R +DEVD
Sbjct: 180 VEEKPDHLLLTGVEE------SHEPHPIESTNTSQISSVTSSEDVKRVLSEPKRTRDEVD 233

Query: 229 NDDRPGSKRRKKDHFNANASPVEKLTGEHR-VVQTLSEVDFVNDGYRWRKYGQKLVKGNP 287
            DD   SKRRKK   N  ++ V+  T E R V+QT SEVD V+DGYRWRKYGQKLVKGNP
Sbjct: 234 VDDDQRSKRRKKSSCNDRSTSVDTPTNEPRLVIQTKSEVDIVSDGYRWRKYGQKLVKGNP 293

Query: 288 NPRNYYRCSNSGCPAKKHVERASHDPKLVITTYEGRHDHDMPPSRTVTPNVAGTKNSKTA 347
           NPR+YYRCS+ GCP KKHVERASHDPKLVIT+YEG+HDHDMPPSRT+T N  G     T 
Sbjct: 294 NPRSYYRCSSPGCPVKKHVERASHDPKLVITSYEGQHDHDMPPSRTITHNTTGLNTCTTT 353

Query: 348 -HNGE-SAKLEEIDAVCSDTDVHRSSDTLSKSTEGKNGEPKTKSEATATASVGLVKSEQS 405
             NGE   K  E +A+  +   + SSD+  K  E  + E + K + + +           
Sbjct: 354 IQNGELGTKSGESNAISLEMVAYNSSDSNIKLEEKLSSESRNKWKESNSGH--------- 404

Query: 406 AVHPESKSSEPQNGNSRTIEGSD------VAHGRSCHKGSSNDQSNCESETKSEQNGTAC 459
               ESKS E Q GN+   + S       V +      G S +Q + ES  + ++N  AC
Sbjct: 405 ----ESKSCEQQTGNTNATKASGAANLDIVVNTSPVSAGRSTEQHDGESRIEPKENSAAC 460

Query: 460 RDKVIQATSLPDANYGEQ 477
              V   T  P++N  EQ
Sbjct: 461 --GVHNITPGPESNPNEQ 476

Source: (Populus tomentosa x P. bolleana) x P. tomentosa

Species: (Populus tomentosa x P. bolleana) x P. tomentosa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225447598|ref|XP_002272407.1| PREDICTED: probable WRKY transcription factor 20-like [Vitis vinifera]

 Score =  328 bits (841), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 200/379 (52%), Positives = 249/379 (65%), Gaps = 20/379 (5%)

Query: 1   MVSSGEDGLDEVASDKLQHEPGPVSETHALQSDQGFSTPILSRK--------SLMLPDTG 52
           M +S E   D+VASDKLQ      +  +A QS Q  + PI+  K        S     + 
Sbjct: 1   MGTSMEGVQDDVASDKLQQRQSLNAGVNASQSVQEVTDPIIPEKASEAELNPSFAASSSQ 60

Query: 53  HLLPSDQERSISSITSEKASQTTDIIP-----ALQTGQEVSTPTIR-EKVSEDGYNWRKY 106
             + +  E +   + S K  Q    IP     A Q+ QE   P+I  EK SEDGYNWRKY
Sbjct: 61  VDMGTSGEGAADDVDSNKLQQRQ--IPDTGVHASQSHQEAIMPSIIPEKASEDGYNWRKY 118

Query: 107 GQKLVRGNEFVRSYYKCTHPRCLAKKQLDCTHEGQIVDTIYSGDHCHPKVP-NVPLAVGI 165
           GQK V+GNEF+RSYY+CTHP C  KKQL+ +H+GQI D IY G H HPK+  ++PLAVG+
Sbjct: 119 GQKHVKGNEFIRSYYRCTHPNCQVKKQLERSHDGQITDIIYFGKHDHPKLQVDLPLAVGL 178

Query: 166 VVSVVEEKPEVSSISSAKDKSSDTHGQTPRQTERNDNSRLSVAAASGGMKDPL-ISNRMK 224
           VV V EE+P+  S +  ++KS D  GQT  Q E  D  + ++A +   +   L + +R +
Sbjct: 179 VVPVQEERPKEPSSTVVEEKSLDGDGQTSCQIEPVDAPQPAIAVSDDCVDRALAVWSRTR 238

Query: 225 DEVDNDDRPGSKRRKKDHFNANASPVEKLTGEHR-VVQTLSEVDFVNDGYRWRKYGQKLV 283
           DE DNDD P SKR+KKD  N +A+P +K +GE R VVQT+SEVD VNDGYRWRKYGQKLV
Sbjct: 239 DETDNDDDPDSKRQKKDINNVDATPTDKPSGEPRIVVQTVSEVDIVNDGYRWRKYGQKLV 298

Query: 284 KGNPNPRNYYRCSNSGCPAKKHVERASHDPKLVITTYEGRHDHDMPPSRTVTPNVAGTKN 343
           KGN NPR+YYRCSN+GCP KKHVERASHDPK+VITTYEG+HDHDMPP+RTVT N AG   
Sbjct: 299 KGNTNPRSYYRCSNAGCPVKKHVERASHDPKMVITTYEGQHDHDMPPARTVTHNSAGPNT 358

Query: 344 SKTAHNGES-AKLEEIDAV 361
           + T  N ES AK E+ D V
Sbjct: 359 TTTDVNDESRAKSEQSDNV 377

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296084997|emb|CBI28412.3| unnamed protein product [Vitis vinifera]

 Score =  317 bits (812), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 175/287 (60%), Positives = 213/287 (74%), Gaps = 5/287 (1%)

Query: 80  ALQTGQEVSTPTIR-EKVSEDGYNWRKYGQKLVRGNEFVRSYYKCTHPRCLAKKQLDCTH 138
           A Q+ QE   P+I  EK SEDGYNWRKYGQK V+GNEF+RSYY+CTHP C  KKQL+ +H
Sbjct: 48  ASQSHQEAIMPSIIPEKASEDGYNWRKYGQKHVKGNEFIRSYYRCTHPNCQVKKQLERSH 107

Query: 139 EGQIVDTIYSGDHCHPKVP-NVPLAVGIVVSVVEEKPEVSSISSAKDKSSDTHGQTPRQT 197
           +GQI D IY G H HPK+  ++PLAVG+VV V EE+P+  S +  ++KS D  GQT  Q 
Sbjct: 108 DGQITDIIYFGKHDHPKLQVDLPLAVGLVVPVQEERPKEPSSTVVEEKSLDGDGQTSCQI 167

Query: 198 ERNDNSRLSVAAASGGMKDPL-ISNRMKDEVDNDDRPGSKRRKKDHFNANASPVEKLTGE 256
           E  D  + ++A +   +   L + +R +DE DNDD P SKR+KKD  N +A+P +K +GE
Sbjct: 168 EPVDAPQPAIAVSDDCVDRALAVWSRTRDETDNDDDPDSKRQKKDINNVDATPTDKPSGE 227

Query: 257 HR-VVQTLSEVDFVNDGYRWRKYGQKLVKGNPNPRNYYRCSNSGCPAKKHVERASHDPKL 315
            R VVQT+SEVD VNDGYRWRKYGQKLVKGN NPR+YYRCSN+GCP KKHVERASHDPK+
Sbjct: 228 PRIVVQTVSEVDIVNDGYRWRKYGQKLVKGNTNPRSYYRCSNAGCPVKKHVERASHDPKM 287

Query: 316 VITTYEGRHDHDMPPSRTVTPNVAGTKNSKTAHNGES-AKLEEIDAV 361
           VITTYEG+HDHDMPP+RTVT N AG   + T  N ES AK E+ D V
Sbjct: 288 VITTYEGQHDHDMPPARTVTHNSAGPNTTTTDVNDESRAKSEQSDNV 334

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449453594|ref|XP_004144541.1| PREDICTED: probable WRKY transcription factor 20-like [Cucumis sativus] gi|449511805|ref|XP_004164058.1| PREDICTED: probable WRKY transcription factor 20-like [Cucumis sativus] gi|315613842|gb|ADU52526.1| WRKY protein [Cucumis sativus]

 Score =  317 bits (811), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 208/417 (49%), Positives = 262/417 (62%), Gaps = 36/417 (8%)

Query: 1   MVSSGE-DGLD-EVASDKLQHEPGPVSETHALQSDQGFSTPILS------------RKSL 46
           MVS+G+ D L+ EV SD+L HE    S+  A Q D G +    S             +++
Sbjct: 1   MVSTGDGDQLENEVDSDQLDHENSSDSQPQASQDDPGGTNASKSDHKCTGASSNTLEEAV 60

Query: 47  MLPDTGHLLPSDQERSISSITSEKASQ---TTDIIPALQTGQEVSTPTIREKVSEDGYNW 103
             P+    L    E  ISSI +EK +    T +  P L   +   T +IREKVSEDG+NW
Sbjct: 61  KQPEVTIALVDRGE--ISSIVTEKVTHKPITAEQNP-LSVLKVCITSSIREKVSEDGFNW 117

Query: 104 RKYGQKLVRGNEFVRSYYKCTHPRCLAKKQLDCTHEGQIVDTIYSGDHCHPK-VPNVPLA 162
           RKYGQKLV+GN FVRSYY+CTHP C+ KKQL+ TH+G+I DT+Y G H HPK  P++P+ 
Sbjct: 118 RKYGQKLVKGNVFVRSYYRCTHPTCMVKKQLERTHDGKITDTVYFGQHDHPKPQPHIPVP 177

Query: 163 VGIVVSVVEEKPEVSSISSAKDKSSDTHGQTPRQTERNDNSRLSVAAASGGMKDPLIS-N 221
           VG VV++VEEK    +  +++DK+S    QTP+QTE  D  +     AS  +KD +   +
Sbjct: 178 VG-VVTMVEEKLGEHASGNSQDKTSIALSQTPQQTELADMRQPPSVIASDNVKDEVSKRS 236

Query: 222 RMKDEVDNDDRPGSKRRKKDHFNANASPV-EKLTGEHRVV-QTLSEVDFVNDGYRWRKYG 279
           R  DEVD+DD P  KR KK   N + + V +K T E RVV QT SEVD VNDGYRWRKYG
Sbjct: 237 RTNDEVDSDDTPDLKREKK-RCNIDVTTVADKSTVESRVVVQTPSEVDIVNDGYRWRKYG 295

Query: 280 QKLVKGNPNPRNYYRCSNSGCPAKKHVERASHDPKLVITTYEGRHDHDMPPSRTVTPNVA 339
           QK VKGNPNPR+YYRCS+ GCP KKHVERASHDPK+V+TTYEG+HDH +PP RTVT N  
Sbjct: 296 QKFVKGNPNPRSYYRCSSPGCPVKKHVERASHDPKIVLTTYEGQHDHVVPPIRTVTLNSV 355

Query: 340 GTKNSKTAHNGESAKLEEIDAVCSDTDVHRSSDTLS-KSTEGKNGEPKTKSEATATA 395
           G   S TA + E+ K + +  V     VH S D  S  S+EGK  E   K  AT T+
Sbjct: 356 G---STTAQSDET-KPKPVSTV-----VHASKDPRSDSSSEGKLIEENGKLNATETS 403

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356499487|ref|XP_003518571.1| PREDICTED: WRKY transcription factor 1-like [Glycine max]

 Score =  315 bits (806), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 199/443 (44%), Positives = 257/443 (58%), Gaps = 38/443 (8%)

Query: 1   MVSSGEDGLDEVASDKLQHEPGPVSETHALQSDQGFSTPILSRKSLMLPDTGHLLP---- 56
           MVSS +     + SDKLQ          +L SD   S    ++  L  P+   +L     
Sbjct: 1   MVSSDKSADQNIPSDKLQQRV-------SLDSDTTLSQGHDTKNDLSKPEEASILSIVVK 53

Query: 57  ---------------SDQERSISSITSEKASQTTDII----PALQTGQEVSTPTIREKVS 97
                          SDQE S  S+  EK  Q  D +    P LQ+ QE  +  IREKVS
Sbjct: 54  NEEGKDSDAIACALESDQEGSTCSLPLEKPLQNPDTLSHELPRLQSSQEFPS-IIREKVS 112

Query: 98  EDGYNWRKYGQKLVRGNEFVRSYYKCTHPRCLAKKQLDCTHEGQIVDTIYSGDHCHPKVP 157
           +DGYNWRKYGQK V+GNEF+RSYYKCTHP CLAKKQL  ++ G I D+I  G H HP+  
Sbjct: 113 KDGYNWRKYGQKHVKGNEFIRSYYKCTHPNCLAKKQLQQSNNGHITDSICIGQHNHPRPQ 172

Query: 158 -NVPLAVGIVVSVVEEKPEVSSISSAKDKSSDTHGQTPRQTERNDNSRLSVAAASGGMKD 216
            N  ++V  V+ VVE+ P  SS+++ +DK+S  HG  P+Q +   +   +  +    +  
Sbjct: 173 LNSTVSVECVLPVVEQAPHKSSLATVEDKASVEHGCMPQQIQPLQSFPPAKVSPVNKLNA 232

Query: 217 PLIS-NRMKDEVDNDDRPGSKRRKKDHFNANASPVEKLTGEHRVV-QTLSEVDFVNDGYR 274
             +S  + K++V +++ P SKR KKD+ N + + V+  T E RVV QT SEVD VNDGYR
Sbjct: 233 SHLSLTKAKNQVHDNEEPESKRLKKDNTNPDVTRVDMSTRESRVVVQTSSEVDLVNDGYR 292

Query: 275 WRKYGQKLVKGNPNPRNYYRCSNSGCPAKKHVERASHDPKLVITTYEGRHDHDMPPSRTV 334
           WRKYGQKLVKGN NPR+YYRCSN GCP KKHVERASHD K+VITTYEG+HDH++PP RTV
Sbjct: 293 WRKYGQKLVKGNTNPRSYYRCSNPGCPVKKHVERASHDSKVVITTYEGQHDHEIPPGRTV 352

Query: 335 TPNVAGTKNSKTAHNGESAKLEEIDAVCSDTDVHRSSDTLSKSTEGKNGEPKTKSEATAT 394
           T N A T    TA NG++    E + +  DT       + S+ TE  NGE  TKS+A   
Sbjct: 353 TQN-AATNARTTASNGKAGTKSEGN-ITDDTGERSGLGSASRLTEQLNGESITKSKAGDM 410

Query: 395 ASVGLVKSEQSAVHPESKSSEPQ 417
               ++        PE K SE Q
Sbjct: 411 VEFCVISLSNEG--PEIKLSEQQ 431

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302121700|gb|ADK92866.1| WRKY-like protein [Hypericum perforatum]

 Score =  311 bits (798), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 206/480 (42%), Positives = 282/480 (58%), Gaps = 42/480 (8%)

Query: 23  PVSETHALQSDQGFSTPILSRKSLMLPDTG-HLLPSDQERSISSITSEKASQT----TDI 77
           P S+ ++ Q+ Q  ++ +   K L   D+G  +   D+E SISSIT  K  QT    ++ 
Sbjct: 40  PNSKVYSAQNQQEKTSSVSPEKPLQGSDSGVRISQLDKEGSISSITPSKLPQTPTRGSNG 99

Query: 78  IPALQTGQEVSTPTIREKVSEDGYNWRKYGQKLVRGNEFVRSYYKCTHPRCLAKKQLDCT 137
           +P++  G+   +P IREKVSEDG++WRKYGQK VRGNEFVRSYY+CTHP C  KKQL+C+
Sbjct: 100 LPSVPEGR---SPIIREKVSEDGFHWRKYGQKFVRGNEFVRSYYRCTHPSCPVKKQLECS 156

Query: 138 HEGQIVDTIYSGDHCHPKVP-NVPLAVGIVVSVVEEKPEVSSISSAKD-KSSDTHGQTPR 195
            +GQI D +Y G H HPK    VP+ VG ++SVVEEK E ++IS A + K        P 
Sbjct: 157 LDGQIADIVYFGQHDHPKPEVTVPVPVGFLLSVVEEKHENAAISKATEVKVKFAPPLLPV 216

Query: 196 QTERNDNSRLSVAAASGGMKDPLI-SNRMKDEVDNDDRPGSKRRKKDHFNANASPVEKLT 254
            +   +NS++S   +S  ++  L  +++ KDEV ND  P SKR+KK   + + +P +  T
Sbjct: 217 LS--GNNSQISTVTSSEDVRGVLSETSKTKDEVCND-HPISKRQKKSAHDMDPNPEDNPT 273

Query: 255 GEHRVV-QTLSEVDFVNDGYRWRKYGQKLVKGNPNPRNYYRCSNSGCPAKKHVERASHDP 313
           GE RVV QT+SEVD VNDGYRWRKYGQK+VKGNPNPR+YYRCS  GCP KKHVERASHDP
Sbjct: 274 GETRVVVQTVSEVDIVNDGYRWRKYGQKMVKGNPNPRSYYRCSYPGCPVKKHVERASHDP 333

Query: 314 KLVITTYEGRHDHDMPPSRTVTPNVAGTKNSKTAHNGESAKLEEIDAVCSDTDVHRSSDT 373
           K+V+T+YEG+H+H++P SRTVT N +G   S    +  S  +    A  S  +  R    
Sbjct: 334 KVVLTSYEGQHEHNIPQSRTVTHNASGQGTSIQHSDRGSGVVSLEVADISGLEPAR---- 389

Query: 374 LSKSTEGKNGEPKTKSEATATASVGLVKSEQSAVHPESKSSEPQNGNSRTIEGSDVAHGR 433
             K  E  +G+ +TK +A    S         AV P +K +  QNG S   +    A   
Sbjct: 390 --KLKEKPDGKLETKVKAVDNVS-------SDAVVPANKPNGKQNGKSDVKDEISAAEVV 440

Query: 434 SCHKGSS-----NDQSNCESETKSEQNGTACRDKVIQATSLPDANYGEQEQTPKAEAVRS 488
                S       ++ N   + +S +NG++C          PDA  G ++  P A  V+S
Sbjct: 441 DNSSVSVSASELKEKDNGRPKAESNENGSSCN---------PDAVTGNKQHVPIAGPVQS 491

Source: Hypericum perforatum

Species: Hypericum perforatum

Genus: Hypericum

Family: Hypericaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356551757|ref|XP_003544240.1| PREDICTED: WRKY transcription factor 1-like [Glycine max]

 Score =  295 bits (754), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 199/462 (43%), Positives = 263/462 (56%), Gaps = 30/462 (6%)

Query: 1   MVSSGEDGLDEVASDKLQHEPGPVSET-----HALQSDQGFSTPILSRKSLMLPD----- 50
           MVS+ +     + SD+LQ    P S+T     H  ++D        S  S+++ +     
Sbjct: 1   MVSTDKSADQNIPSDELQQRVSPDSDTTLSQGHDTKNDLSKPEEATSILSIVVKNEEGKD 60

Query: 51  ---TGHLLPSDQERSISSITSEKASQTTDII----PALQTGQEVSTPTIREKVSEDGYNW 103
              T   L SDQE S  S+   K  Q+ D +    P LQ+ QE  +  IREKVS+DGYNW
Sbjct: 61  SDATACALESDQEGSTCSLPLGKPLQSPDTLSHEFPRLQSSQECPS-IIREKVSKDGYNW 119

Query: 104 RKYGQKLVRGNEFVRSYYKCTHPRCLAKKQLDCTHEGQIVDTIYSGDHCHPKVP-NVPLA 162
           RKYGQK V+GNEF+RSYYKCTHP C AKKQL  ++ G I D+I  G H HP+   N  ++
Sbjct: 120 RKYGQKHVKGNEFIRSYYKCTHPNCQAKKQLQQSNNGHITDSICIGQHNHPRPQLNSTVS 179

Query: 163 VGIVVSVVEEKPEVSSISSAKDKSSDTHGQTPRQTERNDNSRLSVAAASGGMKDP-LISN 221
           V  V+ VVE+ P   S+++ +DK+S  HG  P+Q +   +   +  +    +K   L   
Sbjct: 180 VECVLPVVEQAPHKPSLANVEDKASVEHGCMPQQIKPLQSFPPAKVSPVNELKAAHLQLT 239

Query: 222 RMKDEVDNDDRPGSKRRKKDHFNANASPVEKLTGEHRVV--QTLSEVDFVNDGYRWRKYG 279
           + K++V ++  P SKR KKD+ NA+ + V+  T E RVV  QT SEVD VNDGYRWRKYG
Sbjct: 240 KAKNQVHDNKEPESKRLKKDNSNADVARVDMSTRESRVVVVQTSSEVDLVNDGYRWRKYG 299

Query: 280 QKLVKGNPNPRNYYRCSNSGCPAKKHVERASHDPKLVITTYEGRHDHDMPPSRTVTPNVA 339
           QKLVKGN NPR+YYRCSN GCP KKHVERAS+D K VITTYEG+HDH++PP RTVT N A
Sbjct: 300 QKLVKGNTNPRSYYRCSNPGCPVKKHVERASYDSKTVITTYEGQHDHEIPPGRTVTQNAA 359

Query: 340 GTKNSKTAHNGESAKLEEIDAVCSDTDVHRSSDTLSKSTEGKNGEPKTKSEATATASVGL 399
               +   +     K E       DT         S+ TE + G+  TKS+A       +
Sbjct: 360 TNTRTTATNGKAGTKSE---GNTDDTGERSGLGLTSRLTEQQTGKSTTKSKAGDMVEFRV 416

Query: 400 VKSEQSAVHPESKSSEPQN--GNSRTIEGSDVAHGRSCHKGS 439
           ++       PE K SE Q    NS T + S V++   CH  S
Sbjct: 417 IRLSNEG--PEIKLSEQQQQKDNSATKDDS-VSNDVICHSSS 455

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|312282555|dbj|BAJ34143.1| unnamed protein product [Thellungiella halophila]

 Score =  278 bits (711), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 169/343 (49%), Positives = 215/343 (62%), Gaps = 27/343 (7%)

Query: 10  DEVASDKLQHEPGPVSETHAL-------QSDQGFSTPILSRKSL-MLPDTGHLLPSDQER 61
           D VA+DK+  E  PVS T  +       QS          +K L ++PDT     S  E 
Sbjct: 24  DVVATDKM--EAAPVSTTETVVESSETEQSSGEIPESTDCKKLLELVPDT--TAASQSEV 79

Query: 62  SISSITSEKASQTTDIIPALQTGQEVSTPTIREKVSEDGYNWRKYGQKLVRGNEFVRSYY 121
            ++S  + K  +++ ++ +LQ+G E S+P IREKV EDGYNWRKYGQKLV+GNEFVRSYY
Sbjct: 80  DVASEKAPKIPESSTVL-SLQSGSEGSSPFIREKVMEDGYNWRKYGQKLVKGNEFVRSYY 138

Query: 122 KCTHPRCLAKKQLDCTHEGQIVDTIYSGDHCHPKVPNVPLAVGIVVSVVEEKPEVSSISS 181
           +CTHP C AKKQL+ +  GQIVDT+Y G+H HPK    PL  G  V + ++K      ++
Sbjct: 139 RCTHPNCKAKKQLERSPGGQIVDTVYFGEHDHPK----PL--GGAVPINQDKRSDVITTA 192

Query: 182 AKDKSSDTHGQTPRQTER-----NDNSRLSVAAASGGMKDPLISNRMKDEVDNDD-RPGS 235
           +K+KSS    QT  Q++      +    +SV  ++  +K    S    D V  D   P S
Sbjct: 193 SKEKSSGPSVQTYSQSQTEPPKIHGGLHVSVIPSADDVKVLQTSRTKGDNVHKDSTSPAS 252

Query: 236 KRRKKDHFNANASPVEKLTGEHR-VVQTLSEVDFVNDGYRWRKYGQKLVKGNPNPRNYYR 294
           KRRKK   N    P+E+   E R VVQT +  D VNDGYRWRKYGQK VKG+P PR+YYR
Sbjct: 253 KRRKKGG-NMEHIPMERSNNESRNVVQTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYR 311

Query: 295 CSNSGCPAKKHVERASHDPKLVITTYEGRHDHDMPPSRTVTPN 337
           CS+SGCP KKHVER+SHD KL+ITTYEG+HDHDMPP R VT N
Sbjct: 312 CSSSGCPVKKHVERSSHDTKLLITTYEGKHDHDMPPGRIVTHN 354

Source: Thellungiella halophila

Species: Eutrema halophilum

Genus: Eutrema

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	488
TAIR|locus:2045049	487	ZAP1 "zinc-dependent activator	0.395	0.396	0.472	1.2e-71
TAIR|locus:2133852	557	WRKY20 [Arabidopsis thaliana (	0.538	0.472	0.475	2.2e-67
TAIR|locus:2177596	687	WRKY2 "WRKY DNA-binding protei	0.247	0.176	0.556	2.8e-51
TAIR|locus:2057212	519	WRKY33 "AT2G38470" [Arabidopsi	0.528	0.497	0.419	1.2e-49
TAIR|locus:2102147	423	WRKY58 "WRKY DNA-binding prote	0.221	0.255	0.549	5.3e-49
TAIR|locus:2014799	514	WRKY4 "WRKY DNA-binding protei	0.680	0.645	0.337	1.1e-48
TAIR|locus:2063835	513	WRKY3 "WRKY DNA-binding protei	0.547	0.520	0.388	9.8e-48
TAIR|locus:2131503	568	WRKY34 "WRKY DNA-binding prote	0.225	0.193	0.522	7.6e-47
TAIR|locus:2169354	309	WRKY26 "WRKY DNA-binding prote	0.213	0.336	0.542	1.8e-46
TAIR|locus:2060805	393	WRKY25 "WRKY DNA-binding prote	0.213	0.264	0.523	8.8e-46

TAIR|locus:2045049 ZAP1 "zinc-dependent activator protein-1" [Arabidopsis thaliana (taxid:3702)]

 Score = 405 (147.6 bits), Expect = 1.2e-71, Sum P(2) = 1.2e-71
 Identities = 96/203 (47%), Positives = 121/203 (59%)

Query:   192 QTPRQTER---NDNSRLSVAAASGGMKDPLI-SNRMK-DEVDND-DRPGSKRRKKDHFNA 245
             QT RQTE    +    +SV   +  +K  +  S+R+  D    D + P +KRRKK   N 
Sbjct:   223 QTLRQTEPPKIHGGLHVSVIPPADDVKTDISQSSRITGDNTHKDYNSPTAKRRKKGG-NI 281

Query:   246 NASPVEKLTGEHR-VVQTLSEVDFVNDGYRWRKYGQKLVKGNPNPRNYYRCSNSGCPAKK 304
               SPVE+ T + R VV T +  D VNDGYRWRKYGQK VKG+P PR+YYRCS+ GCP KK
Sbjct:   282 ELSPVERSTNDSRIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKK 341

Query:   305 HVERASHDPKLVITTYEGRHDHDMPPSRTVTPNVAGTKNSKTAHNGESAKLEEIDAVCSD 364
             HVER+SHD KL+ITTYEG+HDHDMPP R VT N     +      G++ K  +   + S 
Sbjct:   342 HVERSSHDTKLLITTYEGKHDHDMPPGRVVTHNNM-LDSEVDDKEGDANKTPQSSTLQSI 400

Query:   365 TDVHRSSDTLSKSTEGKNGEPKT 387
             T      D L K T+  NG  K+
Sbjct:   401 TKDQHVEDHLRKKTK-TNGFEKS 422

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IDA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IDA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=IEP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

TAIR|locus:2133852 WRKY20 [Arabidopsis thaliana (taxid:3702)]

 Score = 618 (222.6 bits), Expect = 2.2e-67, Sum P(3) = 2.2e-67
 Identities = 128/269 (47%), Positives = 164/269 (60%)

Query:    67 TSEKASQTTDIIPALQTGQEVSTPTIREKVSEDGYNWRKYGQKLVRGNEFVRSYYKCTHP 126
             TS      +D   ++QT Q  S  +    +++DGYNWRKYGQK V+G+EF RSYYKCTHP
Sbjct:   180 TSSDIPAGSDQEESIQTSQNDSRGSTPSILADDGYNWRKYGQKHVKGSEFPRSYYKCTHP 239

Query:   127 RCLAKKQLDCTHEGQIVDTIYSGDHCHPKV-PNVPLAVGIXXXXXXXXXXXXXXXXXXXX 185
              C  KK  + +H+GQI D IY G H HPK  P    + G+                    
Sbjct:   240 NCEVKKLFERSHDGQITDIIYKGTHDHPKPQPGRRNSGGMAAQEERLDKYPSSTGRDEKG 299

Query:   186 XXXTHGQTPRQTERNDNSRLSVAAASGGMKDPLISNRMKDEVDNDDRPGSKRRKKDHFNA 245
                 +   P   E+  N  +   +AS    +   SNR KDE D+DD P SKRR+ +    
Sbjct:   300 SGVYNLSNPN--EQTGNPEVPPISASDDGGEAAASNRNKDEPDDDD-PFSKRRRMEGA-M 355

Query:   246 NASPVEKLTGEHRVV-QTLSEVDFVNDGYRWRKYGQKLVKGNPNPRNYYRCSNSGCPAKK 304
               +P+ K   E RVV QTLSEVD ++DGYRWRKYGQK+V+GNPNPR+YY+C+  GCP +K
Sbjct:   356 EITPLVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTAHGCPVRK 415

Query:   305 HVERASHDPKLVITTYEGRHDHDMPPSRT 333
             HVERASHDPK VITTYEG+HDHD+P S++
Sbjct:   416 HVERASHDPKAVITTYEGKHDHDVPTSKS 444

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009611 "response to wounding" evidence=IEP

GO:0009961 "response to 1-aminocyclopropane-1-carboxylic acid" evidence=IEP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0009616 "virus induced gene silencing" evidence=RCA

GO:0010050 "vegetative phase change" evidence=RCA

TAIR|locus:2177596 WRKY2 "WRKY DNA-binding protein 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 347 (127.2 bits), Expect = 2.8e-51, Sum P(2) = 2.8e-51
 Identities = 69/124 (55%), Positives = 87/124 (70%)

Query:   231 DRPGSKRRKKDHFNANASPVEKLTGEHRVV-QTLSEVDFVNDGYRWRKYGQKLVKGNPNP 289
             D   SKRRK + F A  S   +   E RVV QT S+VD ++DGYRWRKYGQK+VKGNPNP
Sbjct:   447 DESESKRRKLEAFAAEMSGSTRAIREPRVVVQTTSDVDILDDGYRWRKYGQKVVKGNPNP 506

Query:   290 RNYYRCSNSGCPAKKHVERASHDPKLVITTYEGRHDHDMPPSRTVTPNVAGTKNSKTAHN 349
             R+YY+C+  GC  +KHVERASHD K VITTYEG+H+HD+P +R  +    G  +S   ++
Sbjct:   507 RSYYKCTAPGCTVRKHVERASHDLKSVITTYEGKHNHDVPAARNSSHGGGG--DSGNGNS 564

Query:   350 GESA 353
             G SA
Sbjct:   565 GGSA 568

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS;IMP

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009942 "longitudinal axis specification" evidence=IMP

GO:0030010 "establishment of cell polarity" evidence=IMP

TAIR|locus:2057212 WRKY33 "AT2G38470" [Arabidopsis thaliana (taxid:3702)]

 Score = 517 (187.1 bits), Expect = 1.2e-49, P = 1.2e-49
 Identities = 115/274 (41%), Positives = 153/274 (55%)

Query:    68 SEKASQTTDIIPALQTGQEVSTPTIREKVSEDGYNWRKYGQKLVRGNEFVRSYYKCTHPR 127
             SE+ SQT +  P     Q VS     ++  EDGYNWRKYGQK V+G+E  RSYYKCT P 
Sbjct:   158 SEQWSQT-ETRP---NNQAVSYNGREQRKGEDGYNWRKYGQKQVKGSENPRSYYKCTFPN 213

Query:   128 CLAKKQLDCTHEGQIVDTIYSGDHCHPKVPNVPLAVGIXXXXXXXXXXXXXXXXXXXXXX 187
             C  KK+++ + EGQI + +Y G H HPK  +   +                         
Sbjct:   214 CPTKKKVERSLEGQITEIVYKGSHNHPKPQSTRRSSSSSSTFHSAVYNASLDHNRQASSD 273

Query:   188 XTHGQTP-RQTE-----RNDNSRL-SVAAASGGMKDPLISNRMKDEVDNDDRPGSKRRKK 240
               +      Q++     + DN+   SV          ++S   +DE D    P +KR K 
Sbjct:   274 QPNSNNSFHQSDSFGMQQEDNTTSDSVGDDEFEQGSSIVS---RDEEDCGSEPEAKRWKG 330

Query:   241 DH-FNANASPVEKLTGEHR-VVQTLSEVDFVNDGYRWRKYGQKLVKGNPNPRNYYRCSNS 298
             D+  N       K   E R VVQT S++D ++DGYRWRKYGQK+VKGNPNPR+YY+C+  
Sbjct:   331 DNETNGGNGGGSKTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTI 390

Query:   299 GCPAKKHVERASHDPKLVITTYEGRHDHDMPPSR 332
             GCP +KHVERASHD + VITTYEG+H+HD+P +R
Sbjct:   391 GCPVRKHVERASHDMRAVITTYEGKHNHDVPAAR 424

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0042742 "defense response to bacterium" evidence=RCA;IMP

GO:0050832 "defense response to fungus" evidence=RCA;IMP

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0010120 "camalexin biosynthetic process" evidence=IMP

GO:0006970 "response to osmotic stress" evidence=IEP

GO:0009408 "response to heat" evidence=IEP

GO:0009409 "response to cold" evidence=IEP

GO:0009414 "response to water deprivation" evidence=IEP

GO:0009651 "response to salt stress" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0034605 "cellular response to heat" evidence=IMP

GO:0070370 "cellular heat acclimation" evidence=IMP

GO:0010508 "positive regulation of autophagy" evidence=IMP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

TAIR|locus:2102147 WRKY58 "WRKY DNA-binding protein 58" [Arabidopsis thaliana (taxid:3702)]

 Score = 325 (119.5 bits), Expect = 5.3e-49, Sum P(2) = 5.3e-49
 Identities = 61/111 (54%), Positives = 79/111 (71%)

Query:   225 DEVDNDDRPGSKRRKKDHFNANASPVEKLTGEHRVVQTLSEVDFVNDGYRWRKYGQKLVK 284
             D+ D++D P SK R+ D  +     V   T    +VQT SEVD ++DGYRWRKYGQK+VK
Sbjct:   264 DDEDDEDLPASKIRRIDGVSTTHRTV---TEPKIIVQTKSEVDLLDDGYRWRKYGQKVVK 320

Query:   285 GNPNPRNYYRCSNSGCPAKKHVERASHDPKLVITTYEGRHDHDMPPSRTVT 335
             GNP+PR+YY+C+   C  +KHVERAS D K VITTYEG+H+HD+P +R  T
Sbjct:   321 GNPHPRSYYKCTTPNCTVRKHVERASTDAKAVITTYEGKHNHDVPAARNGT 371

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IMP

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0031347 "regulation of defense response" evidence=IMP

TAIR|locus:2014799 WRKY4 "WRKY DNA-binding protein 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 508 (183.9 bits), Expect = 1.1e-48, P = 1.1e-48
 Identities = 119/353 (33%), Positives = 180/353 (50%)

Query:    23 PVSETHALQSDQGFS---TPILSRKSLMLPDTGHLLPSDQERSISSITSEKASQTTDIIP 79
             PV  ++ +   Q  +      +   + M P T +  PS Q +S SS   +    T+  +P
Sbjct:   147 PVQGSYGMTHQQALAQVTAQAVQANANMQPQTEYPPPS-QVQSFSS--GQAQIPTSAPLP 203

Query:    80 ALQTGQEVST-------PTIREKVSEDGYNWRKYGQKLVRGNEFVRSYYKCTHPRCLAKK 132
             A +   +V+        P   +K ++DGYNWRKYGQK V+G+EF RSYYKCT+P C  KK
Sbjct:   204 AQRETSDVTIIEHRSQQPLNVDKPADDGYNWRKYGQKQVKGSEFPRSYYKCTNPGCPVKK 263

Query:   133 QLDCTHEGQIVDTIYSGDHCHPKVPNVPLAVGIXXXXXXXXXXXXXXXXXXXXXXXTHGQ 192
             +++ + +GQ+ + IY G H H    N                                  
Sbjct:   264 KVERSLDGQVTEIIYKGQHNHEPPQNTKRGNKDNTANINGSSINNNRGSSELGASQFQTN 323

Query:   193 TPRQTERNDNSRLSVAAASGGMKDPL----ISNRMKDEVDNDDR-PGSKRRKKDHFNANA 247
             +  +T+R  +  +S A  +  + +      + N   D  + D+  P  KRR  +   +  
Sbjct:   324 SSNKTKREQHEAVSQATTTEHLSEASDGEEVGNGETDVREKDENEPDPKRRSTEVRISEP 383

Query:   248 SPV--EKLTGEHRV-VQTLSEVDFVNDGYRWRKYGQKLVKGNPNPRNYYRCSNSGCPAKK 304
             +P    +   E R+ VQT SEVD ++DGYRWRKYGQK+VKGNP PR+YY+C+  GC  +K
Sbjct:   384 APAASHRTVTEPRIIVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRK 443

Query:   305 HVERASHDPKLVITTYEGRHDHDMPPSRTVTPNVAGTKNSKTAHNGESAKLEE 357
             HVERA+ DPK V+TTYEG+H+HD+P +++ +   A  +       G  A L +
Sbjct:   444 HVERAATDPKAVVTTYEGKHNHDLPAAKSSSHAAAAAQLRPDNRPGGLANLNQ 496

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0003677 "DNA binding" evidence=ISS

TAIR|locus:2063835 WRKY3 "WRKY DNA-binding protein 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 499 (180.7 bits), Expect = 9.8e-48, P = 9.8e-48
 Identities = 108/278 (38%), Positives = 153/278 (55%)

Query:    56 PSDQERSISSITSEKASQTTDIIPALQTGQEVSTPTIREKVSEDGYNWRKYGQKLVRGNE 115
             P  Q R+    TS+   +T++I       +  S P   +K ++DGYNWRKYGQK V+G++
Sbjct:   212 PRSQIRASVQETSQGQRETSEI----SVFEHRSQPQNADKPADDGYNWRKYGQKQVKGSD 267

Query:   116 FVRSYYKCTHPRCLAKKQLDCTHEGQIVDTIYSGDHCHPKVPNVPLAVGIXXXXXXXXXX 175
             F RSYYKCTHP C  KK+++ + +GQ+ + IY G H H ++P                  
Sbjct:   268 FPRSYYKCTHPACPVKKKVERSLDGQVTEIIYKGQHNH-ELPQ-KRGNNNGSCKSSDIAN 325

Query:   176 XXXXXXXXXXXXXTHGQTPRQTERNDNSRLSVAAASGGMKDPLISNRMKDEVDNDDRPGS 235
                             +T + T     S  S +   G  +   +  R +DE D   R  +
Sbjct:   326 QFQTSNSSLNKSKRDQETSQVTTTEQMSEASDSEEVGNAETS-VGERHEDEPD-PKRRNT 383

Query:   236 KRRKKDHFNANASPVEKLTGEHRVVQTLSEVDFVNDGYRWRKYGQKLVKGNPNPRNYYRC 295
             + R  +     AS    +T    +VQT SEVD ++DGYRWRKYGQK+VKGNP PR+YY+C
Sbjct:   384 EVRVSEPV---ASSHRTVTEPRIIVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKC 440

Query:   296 SNSGCPAKKHVERASHDPKLVITTYEGRHDHDMPPSRT 333
             +   C  +KHVERA+ DPK V+TTYEG+H+HD+P +RT
Sbjct:   441 TTPDCGVRKHVERAATDPKAVVTTYEGKHNHDVPAART 478

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

TAIR|locus:2131503 WRKY34 "WRKY DNA-binding protein 34" [Arabidopsis thaliana (taxid:3702)]

 Score = 304 (112.1 bits), Expect = 7.6e-47, Sum P(3) = 7.6e-47
 Identities = 58/111 (52%), Positives = 78/111 (70%)

Query:   235 SKRRKKDHFNANASPVEKLTGEHRVV-QTLSEVDFVNDGYRWRKYGQKLVKGNPNPRNYY 293
             SKRRK + +    S   + + E RVV QT S++D ++DGYRWRKYGQK+VKGNPNPR+YY
Sbjct:   336 SKRRKLEAYATETSGSTRASREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYY 395

Query:   294 RCSNSGCPAKKHVERASHDPKLVITTYEGRHDHDMPPSRTVTPNVAGTKNS 344
             +C+ +GC   KHVERAS D K V+TTY G+H H +P +R  +   AG+  +
Sbjct:   396 KCTANGCTVTKHVERASDDFKSVLTTYIGKHTHVVPAARNSSHVGAGSSGT 446

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009409 "response to cold" evidence=IEP

GO:0009846 "pollen germination" evidence=IMP

TAIR|locus:2169354 WRKY26 "WRKY DNA-binding protein 26" [Arabidopsis thaliana (taxid:3702)]

 Score = 298 (110.0 bits), Expect = 1.8e-46, Sum P(2) = 1.8e-46
 Identities = 57/105 (54%), Positives = 71/105 (67%)

Query:   229 NDDRPGSKRRKKDHFNANASPVEKLTGEHRVV-QTLSEVDFVNDGYRWRKYGQKLVKGNP 287
             N      K   +D   A     E+   E RVV QT S++D ++DGYRWRKYGQK+VKGNP
Sbjct:   192 NSSNGDGKDIGEDETEAKRWKREENVKEPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNP 251

Query:   288 NPRNYYRCSNSGCPAKKHVERASHDPKLVITTYEGRHDHDMPPSR 332
             NPR+YY+C+ +GC  +KHVERA  DPK VITTYEG+H H +P  R
Sbjct:   252 NPRSYYKCTFTGCFVRKHVERAFQDPKSVITTYEGKHKHQIPTPR 296

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0034605 "cellular response to heat" evidence=IMP

GO:0070370 "cellular heat acclimation" evidence=IMP

TAIR|locus:2060805 WRKY25 "WRKY DNA-binding protein 25" [Arabidopsis thaliana (taxid:3702)]

 Score = 294 (108.6 bits), Expect = 8.8e-46, Sum P(2) = 8.8e-46
 Identities = 56/107 (52%), Positives = 78/107 (72%)

Query:   226 EVDNDD-RPGSKRRKKDHFNANAS-PVEKLTGEHRVV-QTLSEVDFVNDGYRWRKYGQKL 282
             E+D ++ +P  KR K++  +   S  V K   E RVV QT+S++D + DG+RWRKYGQK+
Sbjct:   281 EIDEEEEQPEMKRMKREGEDEGMSIEVSKGVKEPRVVVQTISDIDVLIDGFRWRKYGQKV 340

Query:   283 VKGNPNPRNYYRCSNSGCPAKKHVERASHDPKLVITTYEGRHDHDMP 329
             VKGN NPR+YY+C+  GC  KK VER++ D + V+TTYEGRH+HD+P
Sbjct:   341 VKGNTNPRSYYKCTFQGCGVKKQVERSAADERAVLTTYEGRHNHDIP 387

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0006970 "response to osmotic stress" evidence=IEP

GO:0009409 "response to cold" evidence=IEP

GO:0009651 "response to salt stress" evidence=IMP

GO:0034605 "cellular response to heat" evidence=IMP

GO:0070370 "cellular heat acclimation" evidence=IMP

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009625 "response to insect" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0010286 "heat acclimation" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0046777 "protein autophosphorylation" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	488
pfam03106	60	pfam03106, WRKY, WRKY DNA -binding domain	4e-35
smart00774	59	smart00774, WRKY, DNA binding domain	1e-32
pfam03106	60	pfam03106, WRKY, WRKY DNA -binding domain	3e-26
smart00774	59	smart00774, WRKY, DNA binding domain	7e-23

>gnl|CDD|145969 pfam03106, WRKY, WRKY DNA -binding domain

 Score =  124 bits (314), Expect = 4e-35
 Identities = 38/60 (63%), Positives = 48/60 (80%)

Query: 269 VNDGYRWRKYGQKLVKGNPNPRNYYRCSNSGCPAKKHVERASHDPKLVITTYEGRHDHDM 328
           ++DGY WRKYGQK VKG+P PR+YYRC++ GCP KK VER+S DP++V  TYEG H+H  
Sbjct: 1   LDDGYNWRKYGQKPVKGSPFPRSYYRCTSPGCPVKKQVERSSDDPQIVEITYEGEHNHPK 60

Length = 60

>gnl|CDD|214815 smart00774, WRKY, DNA binding domain

 Score =  118 bits (298), Expect = 1e-32
 Identities = 36/59 (61%), Positives = 48/59 (81%), Gaps = 1/59 (1%)

Query: 269 VNDGYRWRKYGQKLVKGNPNPRNYYRCSNS-GCPAKKHVERASHDPKLVITTYEGRHDH 326
           ++DGY+WRKYGQK++KG+P PR+YYRC+ + GCPAKK V+R+  DP +V  TYEG H H
Sbjct: 1   LDDGYQWRKYGQKVIKGSPYPRSYYRCTYTQGCPAKKQVQRSDDDPSVVEVTYEGEHTH 59

The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding. Length = 59

>gnl|CDD|145969 pfam03106, WRKY, WRKY DNA -binding domain

 Score =  100 bits (252), Expect = 3e-26
 Identities = 34/60 (56%), Positives = 44/60 (73%), Gaps = 1/60 (1%)

Query: 97  SEDGYNWRKYGQKLVRGNEFVRSYYKCTHPRCLAKKQLD-CTHEGQIVDTIYSGDHCHPK 155
            +DGYNWRKYGQK V+G+ F RSYY+CT P C  KKQ++  + + QIV+  Y G+H HPK
Sbjct: 1   LDDGYNWRKYGQKPVKGSPFPRSYYRCTSPGCPVKKQVERSSDDPQIVEITYEGEHNHPK 60

Length = 60

>gnl|CDD|214815 smart00774, WRKY, DNA binding domain

 Score = 91.0 bits (227), Expect = 7e-23
 Identities = 27/58 (46%), Positives = 40/58 (68%), Gaps = 2/58 (3%)

Query: 98  EDGYNWRKYGQKLVRGNEFVRSYYKCTH-PRCLAKKQLD-CTHEGQIVDTIYSGDHCH 153
           +DGY WRKYGQK+++G+ + RSYY+CT+   C AKKQ+     +  +V+  Y G+H H
Sbjct: 2   DDGYQWRKYGQKVIKGSPYPRSYYRCTYTQGCPAKKQVQRSDDDPSVVEVTYEGEHTH 59

The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding. Length = 59

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	488
PF03106	60	WRKY: WRKY DNA -binding domain; InterPro: IPR00365	99.96
smart00774	59	WRKY DNA binding domain. The WRKY domain is a DNA	99.95
PF03106	60	WRKY: WRKY DNA -binding domain; InterPro: IPR00365	99.95
smart00774	59	WRKY DNA binding domain. The WRKY domain is a DNA	99.94
PF03101	91	FAR1: FAR1 DNA-binding domain; InterPro: IPR004330	90.42
PF04500	62	FLYWCH: FLYWCH zinc finger domain; InterPro: IPR00	90.33
PF04500	62	FLYWCH: FLYWCH zinc finger domain; InterPro: IPR00	89.75
PF03101	91	FAR1: FAR1 DNA-binding domain; InterPro: IPR004330	86.08

>PF03106 WRKY: WRKY DNA -binding domain; InterPro: IPR003657 The WRKY domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger- like motif

Probab=99.96  E-value=2.3e-30  Score=205.07  Aligned_cols=60  Identities=63%  Similarity=1.330  Sum_probs=52.6

Q ss_pred             CCCCchhhhccccccCCCCCCCccccccCCCCCcccceeeccCCCCeEEEEEeeccCCCC
Q 011340          269 VNDGYRWRKYGQKLVKGNPNPRNYYRCSNSGCPAKKHVERASHDPKLVITTYEGRHDHDM  328 (488)
Q Consensus       269 ~dDGy~WRKYGQK~IkGn~~pRsYYrCt~~gC~akK~Ver~~~D~~~~~~TY~G~HnH~~  328 (488)
                      ++|||+|||||||+|+|++|||+||||+..+|+|+|+|||+.+|+.+|+|||+|+|||+.
T Consensus         1 ~~Dgy~WRKYGqK~i~g~~~pRsYYrCt~~~C~akK~Vqr~~~d~~~~~vtY~G~H~h~k   60 (60)
T PF03106_consen    1 LDDGYRWRKYGQKNIKGSPYPRSYYRCTHPGCPAKKQVQRSADDPNIVIVTYEGEHNHPK   60 (60)
T ss_dssp             --SSS-EEEEEEEEETTTTCEEEEEEEECTTEEEEEEEEEETTCCCEEEEEEES--SS--
T ss_pred             CCCCCchhhccCcccCCCceeeEeeeccccChhheeeEEEecCCCCEEEEEEeeeeCCCC
Confidence            589999999999999999999999999999999999999999999999999999999973

The WRKY domain is found in one or two copies in a superfamily of plant transcription factors involved in the regulation of various physiological programs that are unique to plants, including pathogen defence, senescence, trichome development and the biosynthesis of secondary metabolites. The WRKY domain binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core of the W box is essential for function and WRKY binding []. Some proteins known to contain a WRKY domain include Arabidopsis thaliana ZAP1 (Zinc-dependent Activator Protein-1) and AtWRKY44/TTG2, a protein involved in trichome development and anthocyanin pigmentation; and wild oat ABF1-2, two proteins involved in the gibberelic acid-induced expression of the alpha-Amy2 gene. Structural studies indicate that this domain is a four-stranded beta-sheet with a zinc binding pocket, forming a novel zinc and DNA binding structure []. The WRKYGQK residues correspond to the most N-terminal beta-strand, which enables extensive hydrophobic interactions, contributing to the structural stability of the beta-sheet.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2AYD_A 1WJ2_A 2LEX_A.

>smart00774 WRKY DNA binding domain

Probab=99.95  E-value=4.1e-29  Score=197.82  Aligned_cols=58  Identities=62%  Similarity=1.307  Sum_probs=56.5

Q ss_pred             CCCCchhhhccccccCCCCCCCccccccC-CCCCcccceeeccCCCCeEEEEEeeccCC
Q 011340          269 VNDGYRWRKYGQKLVKGNPNPRNYYRCSN-SGCPAKKHVERASHDPKLVITTYEGRHDH  326 (488)
Q Consensus       269 ~dDGy~WRKYGQK~IkGn~~pRsYYrCt~-~gC~akK~Ver~~~D~~~~~~TY~G~HnH  326 (488)
                      ++|||+|||||||.|+|+++||+||||+. ++|+|+|+|||+.+|+.+|+|||+|+|||
T Consensus         1 ~~DGy~WRKYGQK~ikgs~~pRsYYrCt~~~~C~a~K~Vq~~~~d~~~~~vtY~g~H~h   59 (59)
T smart00774        1 LDDGYQWRKYGQKVIKGSPFPRSYYRCTYSQGCPAKKQVQRSDDDPSVVEVTYEGEHTH   59 (59)
T ss_pred             CCCcccccccCcEecCCCcCcceEEeccccCCCCCcccEEEECCCCCEEEEEEeeEeCC
Confidence            47999999999999999999999999998 99999999999999999999999999998

The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding.

>PF03106 WRKY: WRKY DNA -binding domain; InterPro: IPR003657 The WRKY domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger- like motif

Probab=99.95  E-value=3.9e-29  Score=198.11  Aligned_cols=59  Identities=54%  Similarity=1.085  Sum_probs=50.5

Q ss_pred             cCCCcceeecCccccCCCCCCceeEeccCCCccccccchhcC-CCCeEEEEecCCCCCCC
Q 011340           97 SEDGYNWRKYGQKLVRGNEFVRSYYKCTHPRCLAKKQLDCTH-EGQIVDTIYSGDHCHPK  155 (488)
Q Consensus        97 ~dDGy~WRKYGQK~Ikgs~~pRsYYrCt~~~C~akK~Vq~s~-dg~i~~i~Y~G~HnH~~  155 (488)
                      .+|||+|||||||.|+|++|||+||||++.+|+|+|+||++. |+.+++|+|+|+|||++
T Consensus         1 ~~Dgy~WRKYGqK~i~g~~~pRsYYrCt~~~C~akK~Vqr~~~d~~~~~vtY~G~H~h~k   60 (60)
T PF03106_consen    1 LDDGYRWRKYGQKNIKGSPYPRSYYRCTHPGCPAKKQVQRSADDPNIVIVTYEGEHNHPK   60 (60)
T ss_dssp             --SSS-EEEEEEEEETTTTCEEEEEEEECTTEEEEEEEEEETTCCCEEEEEEES--SS--
T ss_pred             CCCCCchhhccCcccCCCceeeEeeeccccChhheeeEEEecCCCCEEEEEEeeeeCCCC
Confidence            379999999999999999999999999999999999999876 78899999999999985

The WRKY domain is found in one or two copies in a superfamily of plant transcription factors involved in the regulation of various physiological programs that are unique to plants, including pathogen defence, senescence, trichome development and the biosynthesis of secondary metabolites. The WRKY domain binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core of the W box is essential for function and WRKY binding []. Some proteins known to contain a WRKY domain include Arabidopsis thaliana ZAP1 (Zinc-dependent Activator Protein-1) and AtWRKY44/TTG2, a protein involved in trichome development and anthocyanin pigmentation; and wild oat ABF1-2, two proteins involved in the gibberelic acid-induced expression of the alpha-Amy2 gene. Structural studies indicate that this domain is a four-stranded beta-sheet with a zinc binding pocket, forming a novel zinc and DNA binding structure []. The WRKYGQK residues correspond to the most N-terminal beta-strand, which enables extensive hydrophobic interactions, contributing to the structural stability of the beta-sheet.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2AYD_A 1WJ2_A 2LEX_A.

>smart00774 WRKY DNA binding domain

Probab=99.94  E-value=2.9e-28  Score=192.98  Aligned_cols=57  Identities=49%  Similarity=1.053  Sum_probs=54.5

Q ss_pred             cCCCcceeecCccccCCCCCCceeEeccC-CCccccccchhcC-CCCeEEEEecCCCCC
Q 011340           97 SEDGYNWRKYGQKLVRGNEFVRSYYKCTH-PRCLAKKQLDCTH-EGQIVDTIYSGDHCH  153 (488)
Q Consensus        97 ~dDGy~WRKYGQK~Ikgs~~pRsYYrCt~-~~C~akK~Vq~s~-dg~i~~i~Y~G~HnH  153 (488)
                      .+|||+|||||||.|+|+++||+||||++ ++|+|+|+||++. |+++++|+|+|+|||
T Consensus         1 ~~DGy~WRKYGQK~ikgs~~pRsYYrCt~~~~C~a~K~Vq~~~~d~~~~~vtY~g~H~h   59 (59)
T smart00774        1 LDDGYQWRKYGQKVIKGSPFPRSYYRCTYSQGCPAKKQVQRSDDDPSVVEVTYEGEHTH   59 (59)
T ss_pred             CCCcccccccCcEecCCCcCcceEEeccccCCCCCcccEEEECCCCCEEEEEEeeEeCC
Confidence            37999999999999999999999999999 8999999999885 789999999999998

The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding.

>PF03101 FAR1: FAR1 DNA-binding domain; InterPro: IPR004330 Phytochrome A is the primary photoreceptor for mediating various far-red light-induced responses in higher plants

Probab=90.42  E-value=0.34  Score=39.89  Aligned_cols=58  Identities=22%  Similarity=0.446  Sum_probs=40.2

Q ss_pred             CCcceeecCcccc-CCCCCCceeEeccC----------------------CCccccccchhcCCCCeEEEEecCCCCCCC
Q 011340           99 DGYNWRKYGQKLV-RGNEFVRSYYKCTH----------------------PRCLAKKQLDCTHEGQIVDTIYSGDHCHPK  155 (488)
Q Consensus        99 DGy~WRKYGQK~I-kgs~~pRsYYrCt~----------------------~~C~akK~Vq~s~dg~i~~i~Y~G~HnH~~  155 (488)
                      =||.||+-=.+.- ++...-+.+|.|..                      -+|+|+-.|-...+|....+.+..+|||+.
T Consensus        10 ~GF~vr~~~s~~~~~~~~~~~~~~~C~r~G~~~~~~~~~~~~~r~~~s~ktgC~a~i~v~~~~~~~w~v~~~~~~HNH~L   89 (91)
T PF03101_consen   10 HGFSVRKSSSRKSKKNGEIKRVTFVCSRGGKYKSKKKNEEKRRRNRPSKKTGCKARINVKRRKDGKWRVTSFVLEHNHPL   89 (91)
T ss_pred             CCeEEEEeeeEeCCCCceEEEEEEEECCcccccccccccccccccccccccCCCEEEEEEEccCCEEEEEECcCCcCCCC
Confidence            4777776443333 44455667777764                      139998888766677777888999999986


Q ss_pred             C
Q 011340          156 V  156 (488)
Q Consensus       156 p  156 (488)
                      .
T Consensus        90 ~   90 (91)
T PF03101_consen   90 C   90 (91)
T ss_pred             C
Confidence            4

It has been found that the proteins governing this response, which include FAR-RED ELONGATED HYPOCOTYL3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1), are a pair of homologous proteins sharing significant sequence homology to mutator-like transposases. These proteins appear to be novel transcription factors, which are essential for activating the expression of FHY1 and FHL (for FHY1-like) and related genes, whose products are required for light-induced phytochrome A nuclear accumulation and subsequent light responses in plants. The FRS (FAR1 Related Sequences) family of proteins share a similar domain structure to mutator-like transposases, including an N-terminal C2H2 zinc finger domain, a central putative core transposase domain, and a C-terminal SWIM motif (named after SWI2/SNF and MuDR transposases). It seems plausible that the FRS family represent transcription factors derived from mutator-like transposases [, ]. This entry represents a domain found in FAR1 and FRS proteins. It contains a WRKY like fold and is therefore most likely a zinc binding DNA-binding domain.

>PF04500 FLYWCH: FLYWCH zinc finger domain; InterPro: IPR007588 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=90.33  E-value=0.21  Score=37.77  Aligned_cols=49  Identities=22%  Similarity=0.419  Sum_probs=25.4

Q ss_pred             ccCCCcceeecCccccCCCCCCceeEeccCC---CccccccchhcCCCCeEEEEecCCCCC
Q 011340           96 VSEDGYNWRKYGQKLVRGNEFVRSYYKCTHP---RCLAKKQLDCTHEGQIVDTIYSGDHCH  153 (488)
Q Consensus        96 ~~dDGy~WRKYGQK~Ikgs~~pRsYYrCt~~---~C~akK~Vq~s~dg~i~~i~Y~G~HnH  153 (488)
                      +.-|||.-+++...      ..+.|++|+..   +|+|+-.+.  .++. ..+...++|||
T Consensus        11 L~~~Gy~y~~~~~~------~~~~~WrC~~~~~~~C~a~~~~~--~~~~-~~~~~~~~HnH   62 (62)
T PF04500_consen   11 LVYDGYRYYFNKRN------DGKTYWRCSRRRSHGCRARLITD--AGDG-RVVRTNGEHNH   62 (62)
T ss_dssp             EEETTEEEEEEEE-------SS-EEEEEGGGTTS----EEEEE----TT-EEEE-S---SS
T ss_pred             EEECCeEEECcCCC------CCcEEEEeCCCCCCCCeEEEEEE--CCCC-EEEECCCccCC
Confidence            34689987776554      45789999875   699998777  2222 33344599999

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a potential FLYWCH Zn-finger domain found in a number of eukaryotic proteins. FLYWCH is a C2H2-type zinc finger characterised by five conserved hydrophobic residues, containing the conserved sequence motif: F/Y-X(n)-L-X(n)-F/Y-X(n)-WXCX(6-12)CX(17-22)HXH where X indicates any amino acid. This domain was first characterised in Drosophila Modifier of mdg4 proteins, Mod(mgd4), putative chromatin modulators involved in higher order chromatin domains. Mod(mdg4) proteins share a common N-terminal BTB/POZ domain, but differ in their C-terminal region, most containing C-terminal FLYWCH zinc finger motifs []. The FLYWCH domain in Mod(mdg4) proteins has a putative role in protein-protein interactions; for example, Mod(mdg4)-67.2 interacts with DNA-binding protein Su(Hw) via its FLYWCH domain. FLYWCH domains have been described in other proteins as well, including suppressor of killer of prune, Su(Kpn), which contains 4 terminal FLYWCH zinc finger motifs in a tandem array and a C-terminal glutathione SH-transferase (GST) domain []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2RPR_A.

>PF04500 FLYWCH: FLYWCH zinc finger domain; InterPro: IPR007588 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=89.75  E-value=0.093  Score=39.71  Aligned_cols=49  Identities=31%  Similarity=0.694  Sum_probs=25.8

Q ss_pred             cCCCCchhhhccccccCCCCCCCccccccC---CCCCcccceeeccCCCCeEEEEEeeccCC
Q 011340          268 FVNDGYRWRKYGQKLVKGNPNPRNYYRCSN---SGCPAKKHVERASHDPKLVITTYEGRHDH  326 (488)
Q Consensus       268 ~~dDGy~WRKYGQK~IkGn~~pRsYYrCt~---~gC~akK~Ver~~~D~~~~~~TY~G~HnH  326 (488)
                      ++-|||.-+++...      ....|++|+.   .+|+|+=.+.  . +.. .++...++|||
T Consensus        11 L~~~Gy~y~~~~~~------~~~~~WrC~~~~~~~C~a~~~~~--~-~~~-~~~~~~~~HnH   62 (62)
T PF04500_consen   11 LVYDGYRYYFNKRN------DGKTYWRCSRRRSHGCRARLITD--A-GDG-RVVRTNGEHNH   62 (62)
T ss_dssp             EEETTEEEEEEEE-------SS-EEEEEGGGTTS----EEEEE-----TT-EEEE-S---SS
T ss_pred             EEECCeEEECcCCC------CCcEEEEeCCCCCCCCeEEEEEE--C-CCC-EEEECCCccCC
Confidence            45699988776654      4678999985   3899988777  2 222 33455599998

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a potential FLYWCH Zn-finger domain found in a number of eukaryotic proteins. FLYWCH is a C2H2-type zinc finger characterised by five conserved hydrophobic residues, containing the conserved sequence motif: F/Y-X(n)-L-X(n)-F/Y-X(n)-WXCX(6-12)CX(17-22)HXH where X indicates any amino acid. This domain was first characterised in Drosophila Modifier of mdg4 proteins, Mod(mgd4), putative chromatin modulators involved in higher order chromatin domains. Mod(mdg4) proteins share a common N-terminal BTB/POZ domain, but differ in their C-terminal region, most containing C-terminal FLYWCH zinc finger motifs []. The FLYWCH domain in Mod(mdg4) proteins has a putative role in protein-protein interactions; for example, Mod(mdg4)-67.2 interacts with DNA-binding protein Su(Hw) via its FLYWCH domain. FLYWCH domains have been described in other proteins as well, including suppressor of killer of prune, Su(Kpn), which contains 4 terminal FLYWCH zinc finger motifs in a tandem array and a C-terminal glutathione SH-transferase (GST) domain []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2RPR_A.

>PF03101 FAR1: FAR1 DNA-binding domain; InterPro: IPR004330 Phytochrome A is the primary photoreceptor for mediating various far-red light-induced responses in higher plants

Probab=86.08  E-value=0.44  Score=39.23  Aligned_cols=31  Identities=32%  Similarity=0.593  Sum_probs=27.0

Q ss_pred             CCCCcccceeeccCCCCeEEEEEeeccCCCCC
Q 011340          298 SGCPAKKHVERASHDPKLVITTYEGRHDHDMP  329 (488)
Q Consensus       298 ~gC~akK~Ver~~~D~~~~~~TY~G~HnH~~p  329 (488)
                      .+|+|+=.|.+.. +...+++.+..+|||++-
T Consensus        60 tgC~a~i~v~~~~-~~~w~v~~~~~~HNH~L~   90 (91)
T PF03101_consen   60 TGCKARINVKRRK-DGKWRVTSFVLEHNHPLC   90 (91)
T ss_pred             cCCCEEEEEEEcc-CCEEEEEECcCCcCCCCC
Confidence            5999998888765 888889999999999874

It has been found that the proteins governing this response, which include FAR-RED ELONGATED HYPOCOTYL3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1), are a pair of homologous proteins sharing significant sequence homology to mutator-like transposases. These proteins appear to be novel transcription factors, which are essential for activating the expression of FHY1 and FHL (for FHY1-like) and related genes, whose products are required for light-induced phytochrome A nuclear accumulation and subsequent light responses in plants. The FRS (FAR1 Related Sequences) family of proteins share a similar domain structure to mutator-like transposases, including an N-terminal C2H2 zinc finger domain, a central putative core transposase domain, and a C-terminal SWIM motif (named after SWI2/SNF and MuDR transposases). It seems plausible that the FRS family represent transcription factors derived from mutator-like transposases [, ]. This entry represents a domain found in FAR1 and FRS proteins. It contains a WRKY like fold and is therefore most likely a zinc binding DNA-binding domain.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	488
2ayd_A	76	Crystal Structure Of The C-Terminal Wrky Domainof A		3e-29
1wj2_A	78	Solution Structure Of The C-Terminal Wrky Domain Of		4e-27

>pdb|2AYD|A Chain A, Crystal Structure Of The C-Terminal Wrky Domainof Atwrky1, An Sa-Induced And Partially Npr1-Dependent Transcription Factor Length = 76

Iteration: 1
 Score =  126 bits (316), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 55/72 (76%), Positives = 62/72 (86%)
Query: 259 VVQTLSEVDFVNDGYRWRKYGQKLVKGNPNPRNYYRCSNSGCPAKKHVERASHDPKLVIT 318
           VV T +  D VNDGYRWRKYGQK VKG+P PR+YYRCS+ GCP KKHVER+SHD KL+IT
Sbjct: 4   VVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLLIT 63
Query: 319 TYEGRHDHDMPP 330
           TYEG+HDHDMPP
Sbjct: 64  TYEGKHDHDMPP 75

>pdb|1WJ2|A Chain A, Solution Structure Of The C-Terminal Wrky Domain Of Atwrky4 Length = 78

Iteration: 1
 Score =  119 bits (298), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 49/70 (70%), Positives = 61/70 (87%)
Query: 260 VQTLSEVDFVNDGYRWRKYGQKLVKGNPNPRNYYRCSNSGCPAKKHVERASHDPKLVITT 319
           VQT SEVD ++DGYRWRKYGQK+VKGNP PR+YY+C+  GC  +KHVERA+ DPK V+TT
Sbjct: 8   VQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTT 67
Query: 320 YEGRHDHDMP 329
           YEG+H+HD+P
Sbjct: 68  YEGKHNHDLP 77

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	488
2ayd_A	76	WRKY transcription factor 1; beta strands, zinc fi	1e-41
2ayd_A	76	WRKY transcription factor 1; beta strands, zinc fi	1e-21
1wj2_A	78	Probable WRKY transcription factor 4; DNA-binding	3e-41
1wj2_A	78	Probable WRKY transcription factor 4; DNA-binding	1e-21

>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana} Length = 76

 Score =  142 bits (360), Expect = 1e-41
 Identities = 55/72 (76%), Positives = 62/72 (86%)

Query: 259 VVQTLSEVDFVNDGYRWRKYGQKLVKGNPNPRNYYRCSNSGCPAKKHVERASHDPKLVIT 318
           VV T +  D VNDGYRWRKYGQK VKG+P PR+YYRCS+ GCP KKHVER+SHD KL+IT
Sbjct: 4   VVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLLIT 63

Query: 319 TYEGRHDHDMPP 330
           TYEG+HDHDMPP
Sbjct: 64  TYEGKHDHDMPP 75

>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana} Length = 76

 Score = 87.9 bits (218), Expect = 1e-21
 Identities = 28/63 (44%), Positives = 41/63 (65%), Gaps = 1/63 (1%)

Query: 96  VSEDGYNWRKYGQKLVRGNEFVRSYYKCTHPRCLAKKQLD-CTHEGQIVDTIYSGDHCHP 154
           +  DGY WRKYGQK V+G+ + RSYY+C+ P C  KK ++  +H+ +++ T Y G H H 
Sbjct: 13  IVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHD 72

Query: 155 KVP 157
             P
Sbjct: 73  MPP 75

>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A* Length = 78

 Score =  141 bits (356), Expect = 3e-41
 Identities = 49/71 (69%), Positives = 61/71 (85%)

Query: 259 VVQTLSEVDFVNDGYRWRKYGQKLVKGNPNPRNYYRCSNSGCPAKKHVERASHDPKLVIT 318
            VQT SEVD ++DGYRWRKYGQK+VKGNP PR+YY+C+  GC  +KHVERA+ DPK V+T
Sbjct: 7   GVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVT 66

Query: 319 TYEGRHDHDMP 329
           TYEG+H+HD+P
Sbjct: 67  TYEGKHNHDLP 77

>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A* Length = 78

 Score = 87.9 bits (218), Expect = 1e-21
 Identities = 29/60 (48%), Positives = 39/60 (65%), Gaps = 1/60 (1%)

Query: 96  VSEDGYNWRKYGQKLVRGNEFVRSYYKCTHPRCLAKKQLD-CTHEGQIVDTIYSGDHCHP 154
           + +DGY WRKYGQK+V+GN + RSYYKCT P C  +K ++    + + V T Y G H H 
Sbjct: 16  LLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHD 75

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	488
2ayd_A	76	WRKY transcription factor 1; beta strands, zinc fi	100.0
1wj2_A	78	Probable WRKY transcription factor 4; DNA-binding	100.0
2ayd_A	76	WRKY transcription factor 1; beta strands, zinc fi	99.95
1wj2_A	78	Probable WRKY transcription factor 4; DNA-binding	99.95

>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}

Probab=100.00  E-value=2.1e-34  Score=236.80  Aligned_cols=73  Identities=75%  Similarity=1.356  Sum_probs=71.0

Q ss_pred             eeeeccccccCCCCchhhhccccccCCCCCCCccccccCCCCCcccceeeccCCCCeEEEEEeeccCCCCCCC
Q 011340          259 VVQTLSEVDFVNDGYRWRKYGQKLVKGNPNPRNYYRCSNSGCPAKKHVERASHDPKLVITTYEGRHDHDMPPS  331 (488)
Q Consensus       259 Vvqt~Se~d~~dDGy~WRKYGQK~IkGn~~pRsYYrCt~~gC~akK~Ver~~~D~~~~~~TY~G~HnH~~p~~  331 (488)
                      +|++.+++++++|||+|||||||.|+|++|||+|||||.++|+|+|+|||+.+|+.+|+|||+|+|||++|.+
T Consensus         4 ~v~t~~~~~~~~DGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~~   76 (76)
T 2ayd_A            4 VVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDMPPG   76 (76)
T ss_dssp             EEEEECSSSCCCCSSCEEEEEEECCTTCSSCEEEEEECSTTCCCEEEEEECSSSTTEEEEEEESCCSSCCCCC
T ss_pred             EEEecCCCCcCCCCchhhhCcccccCCCCCceeEeEcCCCCCCceeeEEEECCCCCEEEEEEccCcCCCCCCC
Confidence            7999999999999999999999999999999999999999999999999999999999999999999999863

>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*

Probab=100.00  E-value=3.1e-34  Score=236.75  Aligned_cols=72  Identities=68%  Similarity=1.294  Sum_probs=69.7

Q ss_pred             eeeeccccccCCCCchhhhccccccCCCCCCCccccccCCCCCcccceeeccCCCCeEEEEEeeccCCCCCC
Q 011340          259 VVQTLSEVDFVNDGYRWRKYGQKLVKGNPNPRNYYRCSNSGCPAKKHVERASHDPKLVITTYEGRHDHDMPP  330 (488)
Q Consensus       259 Vvqt~Se~d~~dDGy~WRKYGQK~IkGn~~pRsYYrCt~~gC~akK~Ver~~~D~~~~~~TY~G~HnH~~p~  330 (488)
                      +|++.+++++++|||+|||||||.|||++|||+|||||.++|+|+|+|||+.+|+.+|+|||+|+|||+.|.
T Consensus         7 ~~~t~s~~~~~dDGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~   78 (78)
T 1wj2_A            7 GVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLPA   78 (78)
T ss_dssp             -CCCCCCCCCCCSSSCBCCCEEECCTTCSSCEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred             EEeccCCCCcCCCCchhhhCcccccCCCcCeeEEeecCcCCCCcEeeEEEEcCCCCEEEEEEeeEcCCCCCC
Confidence            799999999999999999999999999999999999999999999999999999999999999999999984

>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}

Probab=99.95  E-value=1.9e-29  Score=207.35  Aligned_cols=63  Identities=43%  Similarity=0.942  Sum_probs=58.8

Q ss_pred             cccCCCcceeecCccccCCCCCCceeEeccCCCccccccchhcC-CCCeEEEEecCCCCCCCCC
Q 011340           95 KVSEDGYNWRKYGQKLVRGNEFVRSYYKCTHPRCLAKKQLDCTH-EGQIVDTIYSGDHCHPKVP  157 (488)
Q Consensus        95 ~~~dDGy~WRKYGQK~Ikgs~~pRsYYrCt~~~C~akK~Vq~s~-dg~i~~i~Y~G~HnH~~p~  157 (488)
                      .+.+|||+|||||||.|||++|||+|||||+++|+|+|+|||+. |+++++|+|+|.|||+.|.
T Consensus        12 ~~~~DGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~   75 (76)
T 2ayd_A           12 DIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDMPP   75 (76)
T ss_dssp             SCCCCSSCEEEEEEECCTTCSSCEEEEEECSTTCCCEEEEEECSSSTTEEEEEEESCCSSCCCC
T ss_pred             CcCCCCchhhhCcccccCCCCCceeEeEcCCCCCCceeeEEEECCCCCEEEEEEccCcCCCCCC
Confidence            35789999999999999999999999999999999999999875 6789999999999999874

>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*

Probab=99.95  E-value=2e-29  Score=208.12  Aligned_cols=62  Identities=47%  Similarity=0.933  Sum_probs=58.2

Q ss_pred             cccCCCcceeecCccccCCCCCCceeEeccCCCccccccchhc-CCCCeEEEEecCCCCCCCC
Q 011340           95 KVSEDGYNWRKYGQKLVRGNEFVRSYYKCTHPRCLAKKQLDCT-HEGQIVDTIYSGDHCHPKV  156 (488)
Q Consensus        95 ~~~dDGy~WRKYGQK~Ikgs~~pRsYYrCt~~~C~akK~Vq~s-~dg~i~~i~Y~G~HnH~~p  156 (488)
                      .+.+|||+|||||||.|||++|||+|||||+++|+|+|+|||. +|++++.|+|+|.|||+.|
T Consensus        15 ~~~dDGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p   77 (78)
T 1wj2_A           15 DLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLP   77 (78)
T ss_dssp             CCCCSSSCBCCCEEECCTTCSSCEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCC
T ss_pred             CcCCCCchhhhCcccccCCCcCeeEEeecCcCCCCcEeeEEEEcCCCCEEEEEEeeEcCCCCC
Confidence            3578999999999999999999999999999999999999986 5788999999999999987

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	488
d1wj2a_	71	g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cr	7e-33
d1wj2a_	71	g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cr	6e-21

>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 71

class: Small proteins
fold: WRKY DNA-binding domain
superfamily: WRKY DNA-binding domain
family: WRKY DNA-binding domain
domain: WRKY DNA-binding protein 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  117 bits (294), Expect = 7e-33
 Identities = 49/70 (70%), Positives = 61/70 (87%)

Query: 260 VQTLSEVDFVNDGYRWRKYGQKLVKGNPNPRNYYRCSNSGCPAKKHVERASHDPKLVITT 319
           VQT SEVD ++DGYRWRKYGQK+VKGNP PR+YY+C+  GC  +KHVERA+ DPK V+TT
Sbjct: 1   VQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTT 60

Query: 320 YEGRHDHDMP 329
           YEG+H+HD+P
Sbjct: 61  YEGKHNHDLP 70

>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 71

class: Small proteins
fold: WRKY DNA-binding domain
superfamily: WRKY DNA-binding domain
family: WRKY DNA-binding domain
domain: WRKY DNA-binding protein 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 84.1 bits (208), Expect = 6e-21
 Identities = 33/76 (43%), Positives = 43/76 (56%), Gaps = 8/76 (10%)

Query: 81  LQTGQEVSTPTIREKVSEDGYNWRKYGQKLVRGNEFVRSYYKCTHPRCLAKKQLD-CTHE 139
           +QT  EV          +DGY WRKYGQK+V+GN + RSYYKCT P C  +K ++    +
Sbjct: 1   VQTTSEVDLL-------DDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATD 53

Query: 140 GQIVDTIYSGDHCHPK 155
            + V T Y G H H  
Sbjct: 54  PKAVVTTYEGKHNHDL 69

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	488
d1wj2a_	71	WRKY DNA-binding protein 4 {Thale cress (Arabidops	100.0
d1wj2a_	71	WRKY DNA-binding protein 4 {Thale cress (Arabidops	99.96

>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: WRKY DNA-binding domain
superfamily: WRKY DNA-binding domain
family: WRKY DNA-binding domain
domain: WRKY DNA-binding protein 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=2.2e-34  Score=231.90  Aligned_cols=71  Identities=69%  Similarity=1.328  Sum_probs=68.6

Q ss_pred             eeeccccccCCCCchhhhccccccCCCCCCCccccccCCCCCcccceeeccCCCCeEEEEEeeccCCCCCC
Q 011340          260 VQTLSEVDFVNDGYRWRKYGQKLVKGNPNPRNYYRCSNSGCPAKKHVERASHDPKLVITTYEGRHDHDMPP  330 (488)
Q Consensus       260 vqt~Se~d~~dDGy~WRKYGQK~IkGn~~pRsYYrCt~~gC~akK~Ver~~~D~~~~~~TY~G~HnH~~p~  330 (488)
                      |++.+++++++|||+|||||||.|+|++|||+||||+.++|+|+|+|||+.+|+.+|+|||+|+|||++|+
T Consensus         1 v~t~~~~~~~dDGy~WRKYGQK~ikgs~~pRsYYrCt~~~C~a~K~Vqr~~~d~~~~~vtY~G~H~h~~Ps   71 (71)
T d1wj2a_           1 VQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLPA   71 (71)
T ss_dssp             CCCCCCCCCCCSSSCBCCCEEECCTTCSSCEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred             CccccccccCCCCcEecccCceeccCCCCceEEEEccccCCCCcceEEEEcCCCCEEEEEEeeEeCCCCCC
Confidence            57889999999999999999999999999999999999999999999999999999999999999999985

>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: WRKY DNA-binding domain
superfamily: WRKY DNA-binding domain
family: WRKY DNA-binding domain
domain: WRKY DNA-binding protein 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.96  E-value=3.5e-30  Score=207.31  Aligned_cols=63  Identities=46%  Similarity=0.917  Sum_probs=58.8

Q ss_pred             cccCCCcceeecCccccCCCCCCceeEeccCCCccccccchhcC-CCCeEEEEecCCCCCCCCC
Q 011340           95 KVSEDGYNWRKYGQKLVRGNEFVRSYYKCTHPRCLAKKQLDCTH-EGQIVDTIYSGDHCHPKVP  157 (488)
Q Consensus        95 ~~~dDGy~WRKYGQK~Ikgs~~pRsYYrCt~~~C~akK~Vq~s~-dg~i~~i~Y~G~HnH~~p~  157 (488)
                      .+++|||.|||||||.|+|++|||+||||++++|+|+|+||++. |+.++.|+|+|+|||+.|+
T Consensus         8 ~~~dDGy~WRKYGQK~ikgs~~pRsYYrCt~~~C~a~K~Vqr~~~d~~~~~vtY~G~H~h~~Ps   71 (71)
T d1wj2a_           8 DLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLPA   71 (71)
T ss_dssp             CCCCSSSCBCCCEEECCTTCSSCEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred             ccCCCCcEecccCceeccCCCCceEEEEccccCCCCcceEEEEcCCCCEEEEEEeeEeCCCCCC
Confidence            35799999999999999999999999999999999999999875 6899999999999999873