Citrus Sinensis ID: 011345

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------49
MVDMELEAAEALADLAHLAMIENGGGSGAAETATIWGCKGKRVRKRVKTESPPGQAGSAMNPVDPEPPCSDPIDDQVISDQQRDQTACGNILIKPAKADQDAESLKRSSLCATRYISMAGGRSRQNLTEAEKEERRVCRILANRESARQTIRRRQALCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKVMKSEVGETQGEVKLAHAEMSSSPTNCPLLLYNHHALTPLGWPSIIQSSQPVPSRHEMQNAVTFPSNISTSITGKLASSQEQENPTDSNVARTPLYVVPCPWFFPLHDSGSGFHAPISNGLKVLQDETSARNGYGSGSSSKMTADKENHHFLLPVKIKNEAYGLPEAQSYNDLNDIPVTESPQDGGCQQIGHYTREATLTPPPLSSVGGSFIVKHDNVLQSDYTGHTKAVSKIANHLVSHPEKKQEPVNYPSRKLVDAATAAEARKRRKELTKLKNLHGRQCGMQC
cccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccc
cccEHHHHHHHHHHHHHHHHHHccccccccccccccccccccEEEEEEccccccccccccccccccccccccccccccEEccccccccccEEEEcEEEcccccccccccccccccccccccccHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccEEcccccccccEEEccccccccccccccccccccccccccEEEEccccccccccEEEEEcccccccccccccccEEcccEEEEEcccccccccEccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccc
MVDMELEAAEALADLAHLAMIengggsgaaetatiwgckgkrvrkrvktesppgqagsamnpvdpeppcsdpiddqvisDQQRDQTAcgnilikpakadqdaesLKRSSLCATRyismaggrsrqnlteAEKEERRVCRILANRESARQTIRRRQALCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKVMKSEVGETQGEVKLAHaemsssptncplllynhhaltplgwpsiiqssqpvpsrhemqnavtfpsnistsitgklassqeqenptdsnvartplyvvpcpwffplhdsgsgfhapisngLKVLQdetsarngygsgssskmtadkenhhfllpvkikneayglpeaqsyndlndipvtespqdggcqqighytreatltppplssvggsfivkhdnvlqsdytghTKAVSKIANHLvshpekkqepvnypsrklvDAATAAEARKRRKELTKLKnlhgrqcgmqc
MVDMELEAAEALADLAHLAMIENGGGSGAAETAtiwgckgkrvrKRVKTesppgqagsamnpvdPEPPCSDPIDDQVISDQQRDQTACGNILikpakadqdaesLKRSSLCATryismaggrsrqnlteaekeerrvcrilanresarqtiRRRQALCEELTRKaadlsqeneslkreKELAVKEYQSLETINKHLKAQVAKVMKSEVGETQGEVKLAHAEMSSSPTNCPLLLYNHHALTPLGWPSIIQSSQPVPSRHEMQNAVTFPSNISTSITGKLASSQEQENPTDSNVARTPLYVVPCPWFFPLHDSGSGFHAPISNGLKVLQDETSARNGYGSGSSSKMTADKENHHFLLPVKIKNEAYGLPEAQSYNDLNDIPVTESPQDGGCQQIGHYTREATLTPPPLSSVGGSFIVKHDNVLQSDYTGHTKAVSKIANHLvshpekkqepvnypsrklVDAATAAEARKRRKEltklknlhgrqcgmqc
MVDMeleaaealadlahlaMIENGGGSGAAETATIWGCKGkrvrkrvkTESPPGQAGSAMNPVDPEPPCSDPIDDQVISDQQRDQTACGNILIKPAKADQDAESLKRSSLCATRYISMAGGRSRQNLTEAEKEERRVCRILANRESARQTIRRRQALCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKVMKSEVGETQGEVKLAHAEMSSSPTNCPLLLYNHHALTPLGWpsiiqssqpvpsRHEMQNAVTFPSNISTSITGKLASSQEQENPTDSNVARTPLYVVPCPWFFPLHDSGSGFHAPISNGLKVLQDETSARNGYGSGSSSKMTADKENHHFLLPVKIKNEAYGLPEAQSYNDLNDIPVTESPQDGGCQQIGHYTREATLTPPPLSSVGGSFIVKHDNVLQSDYTGHTKAVSKIANHLVSHPEKKQEPVNYPSRKLVDaataaearkrrkeltklkNLHGRQCGMQC
***********LADLAHLAMIENGGGSGAAETATIWGCKG*************************************************NIL********************TRY***********************RI***************************************************************************************NCPLLLYNHHALTPLGWPSII*********************************************RTPLYVVPCPWFFPLHDSGSGFHAPISNGL****************************HFLLPVKIKNEAYGLP***********************QIGHYTR**********SVGGSFIVKHDNVLQSDYTGHTKAVSKIA****************************************************
************************************************************************************************************************************************************LCEELTRKAADLSQENESLKREKELAVKEYQSLETINKH*****************************************************************************************************LYVVPCPW*******************************************************************YNDLND******************************************************************************KLVDAAT*********************C*M**
********AEALADLAHLAMIENGGGSGAAETATIWGCKGK*********************VDPEPPCSDPIDDQVISDQQRDQTACGNILIKPAK*********RSSLCATRYISMAGGRS**********ERRVCRILANRESARQTIRRRQALCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKVMKSEVGETQGEVKLAHAEMSSSPTNCPLLLYNHHALTPLGWPSIIQS*********MQNAVTFPSNISTSITG**************NVARTPLYVVPCPWFFPLHDSGSGFHAPISNGLKVLQDETS**************ADKENHHFLLPVKIKNEAYGLPEAQSYNDLNDIPVTESPQDGGCQQIGHYTREATLTPPPLSSVGGSFIVKHDNVLQSDYTGHTKAVSKIANHLVSHPEKKQEPVNYPSRKLVDAATAAEARKRRKELTKLKNLHGRQCGMQC
MVDMELEAAEALADLAHLAMIE*******************RVRKRVKTE*******SAMNP**PEPPCSDPIDDQVISDQQRDQTACGNILIKPAKADQDAESLKRSSLCATR*****************K*ERRVCRILANRESARQTIRRRQALCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKVMKSEVG*****************TNCPLLLYNHHALTPLGWPSIIQSSQPVPSRHEMQNAVTFPSNISTSITGKLASSQEQENPTDSNVARTPLYVVPCPWFFPLHDSGS****************T*A*********S***ADKENHHFLLPVKIKNEAYGLPEAQSYNDLNDIPVTESPQDGGCQQIGHYTREATLTPPPLSSVGGSFIVKHDNVLQSDYTGHTKAVSKIANHLVSHPEKKQEPVNYPSRKLVDAATAAEARKRRKELTKLKNLH********
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MVDMELEAAEALADLAHLAMIENGGGSGAAETATIWGCKGKRVRKRVKTESPPGQAGSAMNPVDPEPPCSDPIDDQVISDQQRDQTACGNILIKPAKADQDAESLKRSSLCATRYISMAGGRSRQNLTEAEKEERRVCRILANxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxNKHLKAQVAKVMKSEVGETQGEVKLAHAEMSSSPTNCPLLLYNHHALTPLGWPSIIQSSQPVPSRHEMQNAVTFPSNISTSITGKLASSQEQENPTDSNVARTPLYVVPCPWFFPLHDSGSGFHAPISNGLKVLQDETSARNGYGSGSSSKMTADKENHHFLLPVKIKNEAYGLPEAQSYNDLNDIPVTESPQDGGCQQIGHYTREATLTPPPLSSVGGSFIVKHDNVLQSDYTGHTKAVSKIANHLVSHPEKKQEPVNYPSRKLVDAATAAEARKRRKELTKLKNLHGRQCGMQC
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query488 2.2.26 [Sep-21-2011]
P23922349 Transcription factor HBP- N/A no 0.143 0.200 0.457 5e-08
P42774315 G-box-binding factor 1 OS no no 0.159 0.247 0.358 2e-06
P25032354 DNA-binding protein EMBP- N/A no 0.290 0.401 0.301 2e-05
Q9M7Q4416 ABSCISIC ACID-INSENSITIVE no no 0.182 0.213 0.348 0.0001
Q1XGE2345 Transcriptional activator yes no 0.219 0.310 0.278 0.0003
Q8TFU8350 Transcriptional activator yes no 0.219 0.305 0.304 0.0004
>sp|P23922|HBP1A_WHEAT Transcription factor HBP-1a OS=Triticum aestivum PE=2 SV=1 Back     alignment and function desciption
 Score = 59.7 bits (143), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 32/70 (45%), Positives = 47/70 (67%)

Query: 131 EKEERRVCRILANRESARQTIRRRQALCEELTRKAADLSQENESLKREKELAVKEYQSLE 190
           E+E ++  R L+NRESAR++  R+QA CEEL ++A  L  EN SL+ E +   KEY+ L 
Sbjct: 250 ERELKKQKRKLSNRESARRSRLRKQAECEELGQRAEALKSENSSLRIELDRIKKEYEELL 309

Query: 191 TINKHLKAQV 200
           + N  LKA++
Sbjct: 310 SKNTSLKAKL 319
Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.
Triticum aestivum (taxid: 4565)
>sp|P42774|GBF1_ARATH G-box-binding factor 1 OS=Arabidopsis thaliana GN=GBF1 PE=2 SV=2 Back     alignment and function description
>sp|P25032|EMBP1_WHEAT DNA-binding protein EMBP-1 OS=Triticum aestivum PE=1 SV=1 Back     alignment and function description
>sp|Q9M7Q4|AI5L5_ARATH ABSCISIC ACID-INSENSITIVE 5-like protein 5 OS=Arabidopsis thaliana GN=ABF2 PE=1 SV=1 Back     alignment and function description
>sp|Q1XGE2|HAC1_ASPOR Transcriptional activator hacA OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=hacA PE=2 SV=1 Back     alignment and function description
>sp|Q8TFU8|HAC1_EMENI Transcriptional activator hacA OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=hacA PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query488
224069012485 predicted protein [Populus trichocarpa] 0.895 0.901 0.510 1e-104
255585731515 DNA binding protein, putative [Ricinus c 0.985 0.933 0.518 1e-101
225440942496 PREDICTED: uncharacterized protein LOC10 0.911 0.897 0.453 7e-89
357510985498 BZIP transcription factor bZIP39 [Medica 0.918 0.899 0.403 1e-74
449463010536 PREDICTED: uncharacterized protein LOC10 0.864 0.787 0.389 7e-71
449500969576 PREDICTED: uncharacterized protein LOC10 0.864 0.732 0.389 8e-71
15223566471 bZIP transcription factor-like protein [ 0.842 0.872 0.412 5e-68
297850344 647 hypothetical protein ARALYDRAFT_312884 [ 0.840 0.633 0.420 6e-68
8778436 639 F18O14.26 [Arabidopsis thaliana] 0.842 0.643 0.412 7e-68
356503799286 PREDICTED: uncharacterized protein LOC77 0.577 0.986 0.368 6e-31
>gi|224069012|ref|XP_002326253.1| predicted protein [Populus trichocarpa] gi|222833446|gb|EEE71923.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 233/456 (51%), Positives = 292/456 (64%), Gaps = 19/456 (4%)

Query: 36  WGCKGKRVRKRVKTESPPGQAGSAMNPVDPEPPCSDPIDDQVISDQQRDQTACGNILIKP 95
           WG KGKR RKRV+ ES      S +           P  D+ + DQQ   +     ++KP
Sbjct: 46  WGSKGKRARKRVRAESDSVSTYSDL-----------PRQDRAVVDQQPIHSN----VVKP 90

Query: 96  AKADQDAESLKRSSLCATRYISMAGGRSRQNLTEAEKEERRVCRILANRESARQTIRRRQ 155
           A+ + DA+  K S  CAT Y S   GRSR NLTEAEKEERR+ RILANRESARQTIRRRQ
Sbjct: 91  ARQELDADVPKSSPSCATSYPSYGTGRSRLNLTEAEKEERRLRRILANRESARQTIRRRQ 150

Query: 156 ALCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKVMKSEVGETQGEV 215
           ALCEELTRKAADLS ENE+LK+EKELA+K YQSLET NKHLKAQ+AK +K+E+  + G++
Sbjct: 151 ALCEELTRKAADLSWENENLKKEKELALKNYQSLETTNKHLKAQMAKQIKAEMEVSPGDL 210

Query: 216 KLAHAEM-SSSPTNCPLLLYNHHALTPLGWPSIIQSSQPVPSRHEMQNAVTFPSNISTSI 274
           K A  ++ +++PTNCPLL+YN HA +P  WPSIIQSS P+ S +  +NA+  PSN+    
Sbjct: 211 KSALVDIPTTAPTNCPLLVYNQHAFSPHCWPSIIQSSNPIQSHYTTENAIVIPSNMPMPT 270

Query: 275 TGKLASSQ-EQENPTDSNVARTPLYVVPCPWFFPLHDSGSGFHAPISNGLKVLQDETSAR 333
            G   SSQ +QEN    +  RTPLYVV CPWFFP  D G+G HA  S   K  QD  S  
Sbjct: 271 NGTHDSSQLQQENTVIVSGPRTPLYVVSCPWFFPGPDHGNGLHAQPSFSFKHRQDGISLN 330

Query: 334 NGYGSGSSSKMTADKENHHFLLPVKIKNEAYGLPEAQSYNDLNDIPVTESPQDGGCQQIG 393
           N     SS K  A  EN H  L + +K+E     E +  NDLN+ PV  +   GG Q  G
Sbjct: 331 NLCCGSSSPKAAAPMENRHSSLSIIVKSETTSSEEVRVINDLNETPVGFTLYGGG-QCEG 389

Query: 394 HYTREATLTPPPLSSVGGSFIVKHDNVLQSDYTGHTKAVSKIANHL-VSHPEKKQEPVNY 452
            + +E  LTP P +SV  +  VK++   +S++      +   A+ L    PEK Q+P  +
Sbjct: 390 THPKEMILTPVPPTSVTPAVAVKNEAGQKSEHAFGANGICTKASQLRCVLPEKNQDPFKF 449

Query: 453 PSRKLVDAATAAEARKRRKELTKLKNLHGRQCGMQC 488
           PS+KLVDAA+AAEAR+RRKELTKLKNLHGRQC + C
Sbjct: 450 PSKKLVDAASAAEARRRRKELTKLKNLHGRQCRLNC 485

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255585731|ref|XP_002533547.1| DNA binding protein, putative [Ricinus communis] gi|223526583|gb|EEF28837.1| DNA binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|225440942|ref|XP_002277087.1| PREDICTED: uncharacterized protein LOC100257875 [Vitis vinifera] gi|297740087|emb|CBI30269.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|357510985|ref|XP_003625781.1| BZIP transcription factor bZIP39 [Medicago truncatula] gi|355500796|gb|AES81999.1| BZIP transcription factor bZIP39 [Medicago truncatula] Back     alignment and taxonomy information
>gi|449463010|ref|XP_004149227.1| PREDICTED: uncharacterized protein LOC101210630 [Cucumis sativus] Back     alignment and taxonomy information
>gi|449500969|ref|XP_004161242.1| PREDICTED: uncharacterized protein LOC101224097 [Cucumis sativus] Back     alignment and taxonomy information
>gi|15223566|ref|NP_173381.1| bZIP transcription factor-like protein [Arabidopsis thaliana] gi|20466818|gb|AAM20726.1| unknown protein [Arabidopsis thaliana] gi|23198222|gb|AAN15638.1| unknown protein [Arabidopsis thaliana] gi|332191739|gb|AEE29860.1| bZIP transcription factor-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297850344|ref|XP_002893053.1| hypothetical protein ARALYDRAFT_312884 [Arabidopsis lyrata subsp. lyrata] gi|297338895|gb|EFH69312.1| hypothetical protein ARALYDRAFT_312884 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|8778436|gb|AAF79444.1|AC025808_26 F18O14.26 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356503799|ref|XP_003520690.1| PREDICTED: uncharacterized protein LOC778152 [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query488
TAIR|locus:2016422471 AT1G19490 "AT1G19490" [Arabido 0.694 0.719 0.415 2.3e-60
TAIR|locus:2115250315 GBF1 "G-box binding factor 1" 0.157 0.244 0.363 1.8e-07
TAIR|locus:2139584159 GBF6 "AT4G34590" [Arabidopsis 0.147 0.452 0.333 5.9e-05
TAIR|locus:2062455409 bZIP16 "basic region/leucine z 0.172 0.205 0.376 8e-05
UNIPROTKB|P17861261 XBP1 "X-box-binding protein 1" 0.188 0.352 0.354 8.6e-05
RGD|1303073267 Xbp1 "X-box binding protein 1" 0.223 0.408 0.322 0.00012
UNIPROTKB|Q3SZZ2261 XBP1 "X-box-binding protein 1" 0.186 0.348 0.347 0.00015
TAIR|locus:2031705389 bZIP68 "basic region/leucine z 0.163 0.205 0.375 0.00016
TAIR|locus:2148007168 HY5 "ELONGATED HYPOCOTYL 5" [A 0.147 0.428 0.361 0.00025
UNIPROTKB|F1PET1381 XBP1 "Uncharacterized protein" 0.235 0.301 0.317 0.00042
TAIR|locus:2016422 AT1G19490 "AT1G19490" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 580 (209.2 bits), Expect = 2.3e-60, Sum P(2) = 2.3e-60
 Identities = 152/366 (41%), Positives = 204/366 (55%)

Query:    31 ETATIWGCKGXXXXXXXXTESPPGQAGSAMNPVDPEP-PCSDPIDDQVISDQQRDQTA-- 87
             E+A  WG KG        TESPP    S + P D +  P  D  +++++ +++ ++    
Sbjct:    52 ESAASWGSKGKRVRKRVKTESPPSD--SLLKPPDSDTLPTPDLAEERLVKEEEEEEEVEP 109

Query:    88 CGNILIK-PAKADQDAESLKRSSLCAT--RYISMAG-GRSRQNLTEAEKEERRVCRILAN 143
                 L K P K++ + E+ K   L +T  R     G GRSRQNL+EAE+EERR+ RILAN
Sbjct:   110 ITKELTKAPVKSEINGETPK-PILASTLIRCSRSNGCGRSRQNLSEAEREERRIRRILAN 168

Query:   144 RESARQTIRRRQALCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKV 203
             RESARQTIRRRQA+CEEL++KAADL+ ENE+L+REK+ A+KE+QSLETINKHLK QV K 
Sbjct:   169 RESARQTIRRRQAMCEELSKKAADLTYENENLRREKDWALKEFQSLETINKHLKEQVLKS 228

Query:   204 MKSEVGETQGEVKLAHAEMSSSPTNCPLLLYNHHALTPLGWXXXXXXXXXXXXRHEMQNA 263
             +K +  E +   K +  EMS+S T  P   YN +      W             + M + 
Sbjct:   229 VKPDTKEPEESPKPSQVEMSTSST--PFYFYNQNPYQLFCWPHVTQSS------NPMISP 280

Query:   264 VTFPSNISTSITGKLASSQEQENPTDSNVARTPLYVVPCPWFFPLHDSGSGFHAPISNGL 323
             + FP+  S   + K  ++QE EN  D N  +T  YVVPCPWF P  D  +G   P   GL
Sbjct:   281 LEFPT--SGGASAKTITTQEHENAADDNGQKTHFYVVPCPWFLPPPDHSNG--VPF--GL 334

Query:   324 KVLQDETSARNGYGSGSSSKMTAD-KENHHFLLPVKIKNEAYGLPEAQSYNDLNDIPVTE 382
             +  Q  T + NG+    SS    D  E     LP +IK E  G PE +   DLN+   TE
Sbjct:   335 QDTQRGTFS-NGHHIDDSSARPMDVTETPRSHLPTRIKEEDSGSPETRPLYDLNE-SATE 392

Query:   383 SPQDGG 388
                +GG
Sbjct:   393 VLSEGG 398
GO:0003677 "DNA binding" evidence=ISS
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS
GO:0005634 "nucleus" evidence=ISM
GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA
GO:0043565 "sequence-specific DNA binding" evidence=IEA
GO:0046983 "protein dimerization activity" evidence=IEA
TAIR|locus:2115250 GBF1 "G-box binding factor 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2139584 GBF6 "AT4G34590" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2062455 bZIP16 "basic region/leucine zipper transcription factor 16" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|P17861 XBP1 "X-box-binding protein 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|1303073 Xbp1 "X-box binding protein 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q3SZZ2 XBP1 "X-box-binding protein 1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
TAIR|locus:2031705 bZIP68 "basic region/leucine zipper transcription factor 68" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2148007 HY5 "ELONGATED HYPOCOTYL 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|F1PET1 XBP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query488
smart0033865 smart00338, BRLZ, basic region leucin zipper 4e-14
pfam0017064 pfam00170, bZIP_1, bZIP transcription factor 5e-09
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 0.003
>gnl|CDD|197664 smart00338, BRLZ, basic region leucin zipper Back     alignment and domain information 
 Score = 66.4 bits (163), Expect = 4e-14
 Identities = 26/64 (40%), Positives = 40/64 (62%)

Query: 131 EKEERRVCRILANRESARQTIRRRQALCEELTRKAADLSQENESLKREKELAVKEYQSLE 190
           E++E+R  R   NRE+AR++  R++A  EEL RK   L  ENE LK+E E   +E + L+
Sbjct: 1   EEDEKRRRRRERNREAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLK 60

Query: 191 TINK 194
           +  +
Sbjct: 61  SELE 64

Length = 65
>gnl|CDD|201054 pfam00170, bZIP_1, bZIP transcription factor Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 488
KOG0709472 consensus CREB/ATF family transcription factor [Tr 99.56
KOG4005292 consensus Transcription factor XBP-1 [Transcriptio 99.31
PF0017064 bZIP_1: bZIP transcription factor cAMP response el 99.3
smart0033865 BRLZ basic region leucin zipper. 99.3
KOG4343655 consensus bZIP transcription factor ATF6 [Transcri 99.25
KOG3584348 consensus cAMP response element binding protein an 99.1
PF0771654 bZIP_2: Basic region leucine zipper; InterPro: IPR 98.87
PF0313192 bZIP_Maf: bZIP Maf transcription factor; InterPro: 98.03
KOG4571294 consensus Activating transcription factor 4 [Trans 97.55
KOG0837279 consensus Transcriptional activator of the JUN fam 97.48
KOG3119269 consensus Basic region leucine zipper transcriptio 97.1
KOG4196135 consensus bZIP transcription factor MafK [Transcri 97.05
KOG3863604 consensus bZIP transcription factor NRF1 [Transcri 96.18
PF06156107 DUF972: Protein of unknown function (DUF972); Inte 94.98
PRK13169110 DNA replication intiation control protein YabA; Re 94.8
PF0600572 DUF904: Protein of unknown function (DUF904); Inte 94.77
PF08614194 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR 93.68
PRK13729475 conjugal transfer pilus assembly protein TraB; Pro 93.67
PRK10884206 SH3 domain-containing protein; Provisional 93.41
KOG1414395 consensus Transcriptional activator FOSB/c-Fos and 93.16
KOG4005292 consensus Transcription factor XBP-1 [Transcriptio 91.46
PF1374789 DUF4164: Domain of unknown function (DUF4164) 90.56
COG4467114 Regulator of replication initiation timing [Replic 90.55
TIGR02894161 DNA_bind_RsfA transcription factor, RsfA family. I 90.47
PF1022480 DUF2205: Predicted coiled-coil protein (DUF2205); 90.29
PF0218345 HALZ: Homeobox associated leucine zipper; InterPro 90.25
TIGR0244965 conserved hypothetical protein TIGR02449. Members 90.02
PRK10884206 SH3 domain-containing protein; Provisional 89.6
COG307479 Uncharacterized protein conserved in bacteria [Fun 88.69
PRK0211973 hypothetical protein; Provisional 88.58
PF0410269 SlyX: SlyX; InterPro: IPR007236 The SlyX protein h 88.58
TIGR00219283 mreC rod shape-determining protein MreC. MreC (mur 88.44
PRK0440675 hypothetical protein; Provisional 87.82
PRK0279372 phi X174 lysis protein; Provisional 87.19
PF11559151 ADIP: Afadin- and alpha -actinin-Binding; InterPro 86.93
PRK0029568 hypothetical protein; Provisional 86.29
PRK0084677 hypothetical protein; Provisional 86.18
COG4026290 Uncharacterized protein containing TOPRIM domain, 85.67
PF0600572 DUF904: Protein of unknown function (DUF904); Inte 85.65
PF06156107 DUF972: Protein of unknown function (DUF972); Inte 85.44
KOG1962216 consensus B-cell receptor-associated protein and r 84.74
TIGR0244965 conserved hypothetical protein TIGR02449. Members 84.2
PF09726697 Macoilin: Transmembrane protein; InterPro: IPR0191 84.15
PRK13922276 rod shape-determining protein MreC; Provisional 83.91
PF15058200 Speriolin_N: Speriolin N terminus 83.81
PRK0073668 hypothetical protein; Provisional 83.32
PF10473140 CENP-F_leu_zip: Leucine-rich repeats of kinetochor 83.3
PRK1542279 septal ring assembly protein ZapB; Provisional 83.18
PRK0432574 hypothetical protein; Provisional 83.0
KOG4343655 consensus bZIP transcription factor ATF6 [Transcri 82.21
PRK11637428 AmiB activator; Provisional 81.97
PF1419769 Cep57_CLD_2: Centrosome localisation domain of PPC 81.88
PF11559151 ADIP: Afadin- and alpha -actinin-Binding; InterPro 81.55
PRK13169110 DNA replication intiation control protein YabA; Re 81.14
KOG1103561 consensus Predicted coiled-coil protein [Function 81.1
smart0033865 BRLZ basic region leucin zipper. 81.04
PF10186302 Atg14: UV radiation resistance protein and autopha 80.98
PF09726697 Macoilin: Transmembrane protein; InterPro: IPR0191 80.8
PRK11637428 AmiB activator; Provisional 80.61
PF07888546 CALCOCO1: Calcium binding and coiled-coil domain ( 80.11
>KOG0709 consensus CREB/ATF family transcription factor [Transcription] Back     alignment and domain information 
Probab=99.56  E-value=1.9e-15  Score=158.05  Aligned_cols=112  Identities=27%  Similarity=0.399  Sum_probs=89.5

Q ss_pred             CCch-hhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011345          126 NLTE-AEKEERRVCRILANRESARQTIRRRQALCEELTRKAADLSQENESLKREKELAVKEYQSLETINKHLKAQVAKVM  204 (488)
Q Consensus       126 ~lt~-eEkEeKR~RRkiKNRESArRSR~RKQeyveELE~kV~~Le~EN~~Lkkel~~L~qe~~~LesEN~~LRaqL~kL~  204 (488)
                      .+|+ +|+..||.||+|||++|||+||+|||+|++.||.+|..+..||++|+++++.       |+.+|+.|-+||.+|+
T Consensus       241 PLTKaEEriLKrvRRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~kkV~~-------Le~~N~sLl~qL~klQ  313 (472)
T KOG0709|consen  241 PLTKAEERILKRVRRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQKKVEE-------LELSNRSLLAQLKKLQ  313 (472)
T ss_pred             CchHHHHHHHHHHHHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHHHHHH-------HhhccHHHHHHHHHHH
Confidence            3566 6779999999999999999999999999999999999999999988766655       6789999999999998


Q ss_pred             ccccccccccccccccccCCCCcccceeecccccccccc--ccccccCCCCCC
Q 011345          205 KSEVGETQGEVKLAHAEMSSSPTNCPLLLYNHHALTPLG--WPSIIQSSQPVP  255 (488)
Q Consensus       205 a~~~~~~~a~~k~a~~~~spspat~p~ll~n~~pf~~l~--~~s~~qs~~~~~  255 (488)
                      ..+....+         .++++++|.++|.  ..|+++.  -|+|..+..|.+
T Consensus       314 t~v~q~an---------~s~qt~tC~av~~--lS~~l~~s~lp~~~~~~~p~~  355 (472)
T KOG0709|consen  314 TLVIQVAN---------KSTQTSTCLAVLL--LSFCLLLSTLPCFSEFSQPIT  355 (472)
T ss_pred             HHHhhccc---------chhccchhHHHHH--HHHHHHHhhcccccccCCCCc
Confidence            76665433         3578999998765  4555555  566655444433

>KOG4005 consensus Transcription factor XBP-1 [Transcription] Back     alignment and domain information
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization Back     alignment and domain information
>smart00338 BRLZ basic region leucin zipper Back     alignment and domain information
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription] Back     alignment and domain information
>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription] Back     alignment and domain information
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization Back     alignment and domain information
>PF03131 bZIP_Maf: bZIP Maf transcription factor; InterPro: IPR004826 There are several different types of Maf transcription factors with different roles in the cell Back     alignment and domain information
>KOG4571 consensus Activating transcription factor 4 [Transcription] Back     alignment and domain information
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription] Back     alignment and domain information
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription] Back     alignment and domain information
>KOG4196 consensus bZIP transcription factor MafK [Transcription] Back     alignment and domain information
>KOG3863 consensus bZIP transcription factor NRF1 [Transcription] Back     alignment and domain information
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication Back     alignment and domain information
>PRK13169 DNA replication intiation control protein YabA; Reviewed Back     alignment and domain information
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation Back     alignment and domain information
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells Back     alignment and domain information
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional Back     alignment and domain information
>PRK10884 SH3 domain-containing protein; Provisional Back     alignment and domain information
>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription] Back     alignment and domain information
>KOG4005 consensus Transcription factor XBP-1 [Transcription] Back     alignment and domain information
>PF13747 DUF4164: Domain of unknown function (DUF4164) Back     alignment and domain information
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair] Back     alignment and domain information
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family Back     alignment and domain information
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure Back     alignment and domain information
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox [] Back     alignment and domain information
>TIGR02449 conserved hypothetical protein TIGR02449 Back     alignment and domain information
>PRK10884 SH3 domain-containing protein; Provisional Back     alignment and domain information
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PRK02119 hypothetical protein; Provisional Back     alignment and domain information
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function Back     alignment and domain information
>TIGR00219 mreC rod shape-determining protein MreC Back     alignment and domain information
>PRK04406 hypothetical protein; Provisional Back     alignment and domain information
>PRK02793 phi X174 lysis protein; Provisional Back     alignment and domain information
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch Back     alignment and domain information
>PRK00295 hypothetical protein; Provisional Back     alignment and domain information
>PRK00846 hypothetical protein; Provisional Back     alignment and domain information
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only] Back     alignment and domain information
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation Back     alignment and domain information
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication Back     alignment and domain information
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms] Back     alignment and domain information
>TIGR02449 conserved hypothetical protein TIGR02449 Back     alignment and domain information
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes Back     alignment and domain information
>PRK13922 rod shape-determining protein MreC; Provisional Back     alignment and domain information
>PF15058 Speriolin_N: Speriolin N terminus Back     alignment and domain information
>PRK00736 hypothetical protein; Provisional Back     alignment and domain information
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ] Back     alignment and domain information
>PRK15422 septal ring assembly protein ZapB; Provisional Back     alignment and domain information
>PRK04325 hypothetical protein; Provisional Back     alignment and domain information
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription] Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89 Back     alignment and domain information
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch Back     alignment and domain information
>PRK13169 DNA replication intiation control protein YabA; Reviewed Back     alignment and domain information
>KOG1103 consensus Predicted coiled-coil protein [Function unknown] Back     alignment and domain information
>smart00338 BRLZ basic region leucin zipper Back     alignment and domain information
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking Back     alignment and domain information
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query488
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-14
1dh3_A55 Transcription factor CREB; protein-DNA complex, tr 1e-07
3a5t_A107 Transcription factor MAFG; protein-DNA complex, BZ 8e-07
1hjb_A87 Ccaat/enhancer binding protein beta; transcription 2e-06
1gd2_E70 Transcription factor PAP1; basic leucine zipper, p 2e-06
2wt7_A63 Proto-oncogene protein C-FOS; transcription, trans 9e-06
2wt7_B90 Transcription factor MAFB; transcription, transcri 1e-05
1t2k_D61 Cyclic-AMP-dependent transcription factor ATF-2; p 3e-05
1ci6_A63 Transcription factor ATF-4; BZIP; 2.60A {Homo sapi 3e-04
1gu4_A78 CAAT/enhancer binding protein beta; transcription/ 7e-04
1jnm_A62 Proto-oncogene C-JUN; BZIP, protein-DNA complex, t 8e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 74.5 bits (182), Expect = 3e-14
 Identities = 69/538 (12%), Positives = 143/538 (26%), Gaps = 173/538 (32%)

Query: 60  MNPVDPEPPCSDPIDDQVISDQQRDQTACGNILIKPAKA--DQDAESLKRS--SLCATRY 115
           M+P+  E     P     +  +QRD+    N +         Q    L+++   L   + 
Sbjct: 95  MSPIKTE--QRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKN 152

Query: 116 IS---MAG-GRSRQNLT-EAEKEERRVCRI--------LANRESARQTIRRRQALCEELT 162
           +    + G G++   +  +     +  C++        L N  S    +   Q L  ++ 
Sbjct: 153 VLIDGVLGSGKT--WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQID 210

Query: 163 RK-------AADLSQENESLKREKE--LAVKEYQ-SL---------ETINK-HLKAQV-- 200
                    ++++     S++ E    L  K Y+  L         +  N  +L  ++  
Sbjct: 211 PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILL 270

Query: 201 ----AKVMKSEVGETQGEVKLAHAEMSSSP----------TNC-------------PLLL 233
                +V       T   + L H  M+ +P           +C             P  L
Sbjct: 271 TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRL 330

Query: 234 ------YNHHALTPLGWP--------SIIQSS----QPVPSRHEMQNAVTFP--SNISTS 273
                       T   W         +II+SS    +P   R        FP  ++I T 
Sbjct: 331 SIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTI 390

Query: 274 ITGKL---ASSQEQENPTDSNVARTPLYVVPCPWFFPLHDSGSGFHAPISNGLKVLQDET 330
           +   +       +     +     + +   P      +                 +  E 
Sbjct: 391 LLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPS---------------IYLEL 435

Query: 331 SARNGYGSGSSSKMTADKENHHFLLPVKIKNEAYGLPEAQSYNDLNDIPVTESPQDG-GC 389
                       K+  +   H  ++      + Y +P+    +DL    +     D    
Sbjct: 436 KV----------KLENEYALHRSIV------DHYNIPKTFDSDDLIPPYL-----DQYFY 474

Query: 390 QQIGHYTREATL-----------------------TPPPLSSVGG------------SFI 414
             IGH+ +                                ++ G              +I
Sbjct: 475 SHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYI 534

Query: 415 VKHDNV---LQSDYTGHTKAVSKIANHLVSHPEKK--QEPVNYPSRKLVDAATAAEAR 467
             +D     L +        + KI  +L+        +  +      + + A     R
Sbjct: 535 CDNDPKYERLVNAI---LDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQR 589
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1 Length = 55 Back     alignment and structure
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus} Length = 107 Back     alignment and structure
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1 Length = 87 Back     alignment and structure
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1 Length = 70 Back     alignment and structure
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D Length = 63 Back     alignment and structure
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A Length = 90 Back     alignment and structure
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1 Length = 61 Back     alignment and structure
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1 Length = 63 Back     alignment and structure
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A Length = 78 Back     alignment and structure
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A Length = 62 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query488
1dh3_A55 Transcription factor CREB; protein-DNA complex, tr 99.43
2wt7_A63 Proto-oncogene protein C-FOS; transcription, trans 99.24
1t2k_D61 Cyclic-AMP-dependent transcription factor ATF-2; p 99.18
1jnm_A62 Proto-oncogene C-JUN; BZIP, protein-DNA complex, t 99.07
2dgc_A63 Protein (GCN4); basic domain, leucine zipper, DNA 99.04
1ci6_A63 Transcription factor ATF-4; BZIP; 2.60A {Homo sapi 98.81
1gd2_E70 Transcription factor PAP1; basic leucine zipper, p 98.66
1hjb_A87 Ccaat/enhancer binding protein beta; transcription 98.53
1gu4_A78 CAAT/enhancer binding protein beta; transcription/ 98.45
3a5t_A107 Transcription factor MAFG; protein-DNA complex, BZ 98.31
2wt7_B90 Transcription factor MAFB; transcription, transcri 98.17
2oqq_A42 Transcription factor HY5; homodimer leucine zipper 96.98
1skn_P92 DNA-binding domain of SKN-1; complex (transcriptio 95.49
1deb_A54 APC protein, adenomatous polyposis coli protein; c 94.37
2w6a_A63 ARF GTPase-activating protein GIT1; PIX, zinc, sig 93.24
3s9g_A104 Protein hexim1; cyclin T-binding domain (TBD), cyc 92.8
3he5_A49 Synzip1; heterodimeric coiled-coil, de novo protei 91.4
3a7p_A152 Autophagy protein 16; coiled-coil, coiled coil, cy 90.31
3hnw_A138 Uncharacterized protein; coiled-coil, structural g 89.94
2jee_A81 YIIU; FTSZ, septum, coiled-coil, cell division, ce 89.25
2oxj_A34 Hybrid alpha/beta peptide based on the GCN4-P1 Se 88.82
3m48_A33 General control protein GCN4; leucine zipper, synt 88.81
2c9l_Y63 EB1, zebra, BZLF1 trans-activator protein; viral p 88.58
1kd8_B36 GABH BLL, GCN4 acid base heterodimer base-D12LA16L 88.32
1kd8_A36 GABH AIV, GCN4 acid base heterodimer acid-D12IA16V 87.64
3hnw_A138 Uncharacterized protein; coiled-coil, structural g 87.3
3oja_B597 Anopheles plasmodium-responsive leucine-rich REPE 86.68
1go4_E100 MAD1 (mitotic arrest deficient)-like 1; mitotic sp 86.45
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 85.71
2kz5_A91 Transcription factor NF-E2 45 kDa subunit; structu 85.52
3c3f_A34 Alpha/beta peptide with the GCN4-PLI SIDE chain S 85.36
2jee_A81 YIIU; FTSZ, septum, coiled-coil, cell division, ce 85.36
2yy0_A53 C-MYC-binding protein; conserved hypothetical prot 84.27
3efg_A78 Protein SLYX homolog; xanthomonas campestris PV. c 84.08
3m91_A51 Proteasome-associated ATPase; coil COIL alpha heli 84.05
3vmx_A48 Voltage-gated hydrogen channel 1; coiled-coil, ION 83.64
3cve_A72 Homer protein homolog 1; coiled coil, alternative 82.89
3c3g_A33 Alpha/beta peptide with the GCN4-PLI SIDE chain S 82.38
2bni_A34 General control protein GCN4; four helix bundle, a 82.15
3oja_B597 Anopheles plasmodium-responsive leucine-rich REPE 82.01
3cvf_A79 Homer-3, homer protein homolog 3; coiled coil, alt 81.82
1uo4_A34 General control protein GCN4; four helix bundle, c 81.71
1nkp_B83 MAX protein, MYC proto-oncogene protein; transcrip 81.52
1t2k_D61 Cyclic-AMP-dependent transcription factor ATF-2; p 81.49
3a2a_A58 Voltage-gated hydrogen channel 1; voltage-gated pr 81.28
2wq1_A33 General control protein GCN4; TAA, nucleus, coiled 81.09
1nlw_A80 MAD protein, MAX dimerizer; transcription factor, 80.85
2hy6_A34 General control protein GCN4; protein design, para 80.37
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1 Back     alignment and structure
Probab=99.43  E-value=1.6e-13  Score=106.13  Aligned_cols=52  Identities=29%  Similarity=0.485  Sum_probs=47.8

Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011345          135 RRVCRILANRESARQTIRRRQALCEELTRKAADLSQENESLKREKELAVKEY  186 (488)
Q Consensus       135 KR~RRkiKNRESArRSR~RKQeyveELE~kV~~Le~EN~~Lkkel~~L~qe~  186 (488)
                      ||++||++||+||++||.||++|+++||.+|..|+.||..|..++..|++.+
T Consensus         1 kr~rR~~~NResA~rSR~RKk~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~   52 (55)
T 1dh3_A            1 KREVRLMKNREAARESRRKKKEYVKSLENRVAVLENQNKTLIEELKALKDLY   52 (55)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             ChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            5889999999999999999999999999999999999999999888876543
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D Back     alignment and structure
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1 Back     alignment and structure
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A Back     alignment and structure
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D Back     alignment and structure
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1 Back     alignment and structure
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1 Back     alignment and structure
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1 Back     alignment and structure
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A Back     alignment and structure
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus} Back     alignment and structure
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A Back     alignment and structure
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana} Back     alignment and structure
>1skn_P DNA-binding domain of SKN-1; complex (transcription factor/DNA), transcription/DNA complex; HET: DNA LDA; 2.50A {Caenorhabditis elegans} SCOP: a.37.1.1 Back     alignment and structure
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1 Back     alignment and structure
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus} Back     alignment and structure
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A Back     alignment and structure
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene} Back     alignment and structure
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae} Back     alignment and structure
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens} Back     alignment and structure
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli} Back     alignment and structure
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A* Back     alignment and structure
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A Back     alignment and structure
>2c9l_Y EB1, zebra, BZLF1 trans-activator protein; viral protein, epstein-BARR virus, EBV; 2.25A {Human herpesvirus 4} SCOP: h.1.3.1 PDB: 2c9n_Y Back     alignment and structure
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B Back     alignment and structure
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A Back     alignment and structure
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens} Back     alignment and structure
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Back     alignment and structure
>2kz5_A Transcription factor NF-E2 45 kDa subunit; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens} Back     alignment and structure
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1 Back     alignment and structure
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli} Back     alignment and structure
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens} Back     alignment and structure
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV} Back     alignment and structure
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A Back     alignment and structure
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus} Back     alignment and structure
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus} Back     alignment and structure
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A* Back     alignment and structure
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ... Back     alignment and structure
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens} Back     alignment and structure
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A* Back     alignment and structure
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B Back     alignment and structure
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1 Back     alignment and structure
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens} Back     alignment and structure
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ... Back     alignment and structure
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1 Back     alignment and structure
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query488
d1sknp_74 Skn-1 {Caenorhabditis elegans [TaxId: 6239]} 89.54
>d1sknp_ a.37.1.1 (P:) Skn-1 {Caenorhabditis elegans [TaxId: 6239]} Back     information, alignment and structure
class: All alpha proteins
fold: A DNA-binding domain in eukaryotic transcription factors
superfamily: A DNA-binding domain in eukaryotic transcription factors
family: A DNA-binding domain in eukaryotic transcription factors
domain: Skn-1
species: Caenorhabditis elegans [TaxId: 6239]

Probab=89.54  E-value=0.071  Score=41.90  Aligned_cols=35  Identities=26%  Similarity=0.326  Sum_probs=28.4

Q ss_pred             Cchhh-HHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 011345          127 LTEAE-KEERRVCRILANRESARQTIRRRQALCEEL  161 (488)
Q Consensus       127 lt~eE-kEeKR~RRkiKNRESArRSR~RKQeyveEL  161 (488)
                      |+++- .-.+-+||.=|||.+||.+|+||-...++|
T Consensus        39 Lte~Ql~lirDIRRRGKNKvAAqnCRKRKld~~d~l   74 (74)
T d1sknp_          39 LSEYQRQLIRKIRRRGKNKVAARTCRQRRTDRHDKM   74 (74)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             CCHHHHHHHHHHHHhcccHHHHHHHHHhhhhhhccC
Confidence            66633 377889999999999999999998876653